Citrus Sinensis ID: 004006
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 779 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WMY5 | 952 | Pentatricopeptide repeat- | yes | no | 0.958 | 0.784 | 0.684 | 0.0 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.591 | 0.729 | 0.251 | 5e-55 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.593 | 0.612 | 0.269 | 1e-53 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.631 | 0.782 | 0.248 | 2e-52 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.631 | 0.880 | 0.236 | 9e-52 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.572 | 0.610 | 0.292 | 1e-51 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.586 | 0.792 | 0.248 | 1e-51 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.631 | 0.776 | 0.232 | 2e-51 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.614 | 0.523 | 0.256 | 2e-51 | |
| Q9FMQ1 | 816 | Pentatricopeptide repeat- | no | no | 0.596 | 0.569 | 0.262 | 3e-51 |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/804 (68%), Positives = 647/804 (80%), Gaps = 57/804 (7%)
Query: 1 MDN---ILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPH-NLHRPP 56
MDN +LSLSAPHFP++ L H P S+SFSLKQPPP P PPE +L RP
Sbjct: 1 MDNGGSVLSLSAPHFPYSATILRRHSP----VASISFSLKQPPPQPPEPPESPPDLRRPE 56
Query: 57 KSSRPT------------RSKIPKNPFKNLLNSATTHVPSPPSHS------------LSA 92
KS + ++ + NP K L N ++ SP S L++
Sbjct: 57 KSIGSSSSSSSPSPIPSPKTPLKINPLKGLTNRSSV---SPLVQSEVSSKVSSFGSSLAS 113
Query: 93 KLRLSSKLSPPPPPPPPPPPAEQLQ-EPQSQGNDEIPDAENRSPSSSLATSQEETEFRQE 151
KLRLSSKLSPPPPPPPPPP E Q + + + + P+ E R+P + EFRQE
Sbjct: 114 KLRLSSKLSPPPPPPPPPPVEETTQFRDEFRSDTKPPEEETRNP---------QQEFRQE 164
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
GKIFVGNLP WIKK EFFRQFGPI+NVILIKG++ EKN GFGF+IY AAEKSAM
Sbjct: 165 GKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIY---AAEKSAM 221
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEE-----FRSTWHKEREWH 266
KAVEFDGVEFHGR+LTVKLDDG+RLK KAE R RWV GEE +S+WH+ERE
Sbjct: 222 KAVEFDGVEFHGRILTVKLDDGKRLKTKAEQRVRWV--EEGEEDTKMSNKSSWHQEREGS 279
Query: 267 RREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARG 326
R+ ++ ++T +NWQAV+SAFE+I KPSR EFGLMV +Y RRGDMHRAR+TFE MRARG
Sbjct: 280 RKSLQRILDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARG 339
Query: 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386
I PT +YT+LIHAYAVGRDM+EALSCVRKMKEEGIEMSLVTYS+IVGGF+K G+AEAAD
Sbjct: 340 ITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAAD 399
Query: 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446
+WF+EAK H TLNA IYG IIYA CQT NMERAEALVR+MEEEGIDAPI IYH MMDGY
Sbjct: 400 YWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGY 459
Query: 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506
T++ +E+K L+VF+RLKECGF+P++++YGCLINLYTK+GK+SKALEVS+VMK G+KHN+
Sbjct: 460 TMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNL 519
Query: 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKE 566
KTYSM+INGF+KLKDWAN FAVFED++++G+KPDV+LYNNII AFCGMGNMDRAI VKE
Sbjct: 520 KTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKE 579
Query: 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626
MQK RHRPT+RTFMPIIHG+A++G+M+R+LE+FDMMRR GC+PTVHTFN LI GLVEKRQ
Sbjct: 580 MQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ 639
Query: 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686
MEKA+EILDEMTLAG+S NEHTYT IM GYAS+GDTGKAFEYFT+L+NEGL++D+FTYEA
Sbjct: 640 MEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA 699
Query: 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746
LLKACCKSGRMQSALAVTKEMSA+ IPRN+FVYNILIDGWARRGDVWEAADL+QQMK+EG
Sbjct: 700 LLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEG 759
Query: 747 VQPDVHTYTSFINACKCSKSNQRN 770
V+PD+HTYTSFI+A CSK+ N
Sbjct: 760 VKPDIHTYTSFISA--CSKAGDMN 781
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/462 (25%), Positives = 228/462 (49%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358
+ + +N + RR + A M G EP + ++L++ Y + + +A++ V +M
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 180
Query: 359 EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME 418
E G + T++ ++ G A A ++ +R + + YG ++ C+ +++
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDID 240
Query: 419 RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478
A +L++ ME+ I+A + IY+ ++DG + + L +F + G P + +Y LI
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI 300
Query: 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538
+ G+ S A + M I N+ T+S LI+ F+K +++++++ +
Sbjct: 301 SCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 360
Query: 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI 598
PD+ Y+++I FC +D A H+ + M + P T+ +I GF +A ++ +E+
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL 420
Query: 599 FDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658
F M + G + T+ LI G + R + A + +M G+ PN TY ++ G
Sbjct: 421 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCK 480
Query: 659 LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFV 718
G KA F L+ +E D++TY +++ CK+G+++ + +S + + N
Sbjct: 481 NGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIA 540
Query: 719 YNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINA 760
YN +I G+ R+G EA L+++MK++G P+ TY + I A
Sbjct: 541 YNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA 582
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 125/464 (26%), Positives = 237/464 (51%), Gaps = 2/464 (0%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
KP F +++ R + A E+M + G+ P +T ++ Y D++ AL
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-NAIIYGNIIYAQ 411
+M E G S V+ ++IV GF K G E A ++ +E + + + ++
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI 471
C+ +++ A ++ M +EG D + Y+ ++ G +G ++ + V +++ SP+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNT 365
Query: 472 ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531
++Y LI+ K +V +A E+++V+ S GI ++ T++ LI G ++ +FE+
Sbjct: 366 VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEE 425
Query: 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGE 591
+ G +PD YN +I + C G +D A++++K+M+ + T+ +I GF +A +
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485
Query: 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651
+ A EIFD M G T+N LI GL + R++E A +++D+M + G P+++TY +
Sbjct: 486 TREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNS 545
Query: 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711
++ + GD KA + + + G E D+ TY L+ CK+GR++ A + + + +
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605
Query: 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQM-KQEGVQPDVHTY 754
I YN +I G R+ EA +L ++M +Q PD +Y
Sbjct: 606 INLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSY 649
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May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/498 (24%), Positives = 240/498 (48%), Gaps = 6/498 (1%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKKP----SRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + V+S ER++ + +++N + RR + A M
Sbjct: 82 EFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKM 141
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP + ++L++ Y G+ + EA++ V +M + + VT++ ++ G A
Sbjct: 142 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKA 201
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + R + YG ++ C+ +++ A +L++ ME+ I+A + IY +
Sbjct: 202 SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTI 261
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D N L +F + G P++++Y LI G+ S A + M I
Sbjct: 262 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T+S LI+ F+K +++++++ + PD+ Y+++I FC +D A H
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF +A ++ +E+F M + G + T+N LI GL
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ + A +I +M G+ P+ TY+ ++ G G KA F L+ +E D++
Sbjct: 442 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
TY +++ CK+G+++ + +S + + N +Y +I G+ R+G EA L ++M
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 743 KQEGVQPDVHTYTSFINA 760
K++G P+ TY + I A
Sbjct: 562 KEDGTLPNSGTYNTLIRA 579
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 118/498 (23%), Positives = 245/498 (49%), Gaps = 6/498 (1%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKKP----SRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + + V+S E++++ + + +++N + RR + A M
Sbjct: 12 EFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKM 71
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP++ ++L++ Y G+ + +A++ V +M E G +T++ ++ G A
Sbjct: 72 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 131
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + +R N + YG ++ C+ +++ A L+ ME I+A + I++ +
Sbjct: 132 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D + + L +F+ ++ G P++++Y LI+ G+ S A ++ M I
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T++ LI+ F+K + + +D+++ + PD+ YN++I FC +D+A
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 311
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF ++ ++ E+F M G + T+ LI GL
Sbjct: 312 MFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 371
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ A ++ +M G+ P+ TY+ ++ G + G KA E F ++ ++LD++
Sbjct: 372 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 431
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
Y +++ CK+G++ + +S + + N YN +I G + + EA L+++M
Sbjct: 432 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 491
Query: 743 KQEGVQPDVHTYTSFINA 760
K++G PD TY + I A
Sbjct: 492 KEDGPLPDSGTYNTLIRA 509
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 133/454 (29%), Positives = 226/454 (49%), Gaps = 8/454 (1%)
Query: 310 GDMHR-ARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT 368
G+ H+ A F +M +R I PTL + ++ A+ +++ ALS +R M + G + V
Sbjct: 195 GNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVI 254
Query: 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428
Y ++ +K A EE +A + ++I C+ + A +V M
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 314
Query: 429 EEGIDAPIDI-YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487
G AP DI Y +M+G IG + +F R+ + P I+ + LI+ + G++
Sbjct: 315 IRGF-APDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRL 369
Query: 488 SKALEV-SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN 546
A V S ++ S GI ++ TY+ LI G+ K V D+ G KP+V Y
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTI 429
Query: 547 IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606
++ FC +G +D A +++ EM + +P + F +I F + + A+EIF M R G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
Query: 607 CIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666
C P V+TFN+LI GL E +++ A+ +L +M G+ N TY T+++ + G+ +A
Sbjct: 490 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEAR 549
Query: 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726
+ ++ +G LD TY +L+K C++G + A ++ ++M + NILI+G
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGL 609
Query: 727 ARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINA 760
R G V EA + ++M G PD+ T+ S IN
Sbjct: 610 CRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 643
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/498 (24%), Positives = 239/498 (47%), Gaps = 41/498 (8%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKKP----SRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + + V+S E++++ + + +++N + RR + A M
Sbjct: 87 EFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKM 146
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP++ ++L++ Y G+ + +A++ V +M E G +T++ ++ G A
Sbjct: 147 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + +R N + YG ++ C+ +++ A L+ ME I+A + IY +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTV 266
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D +E+ L NL+T+ M++ G+
Sbjct: 267 IDSLCKYRHEDDAL----------------------NLFTE-------------MENKGV 291
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
+ N+ TYS LI+ + W++ + D++ + P+VV +N +I AF G + A
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ EM K P T+ +I+GF + A +F++M C P V T+N LI G
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ +++++ +E+ EM+ G+ N TYTT++HG+ D A F ++ ++G+ ++
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
TY LL CK+G+++ A+ V + + K+ + YNI+I+G + G V + DL +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531
Query: 743 KQEGVQPDVHTYTSFINA 760
+GV+PDV Y + I+
Sbjct: 532 SLKGVKPDVIIYNTMISG 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 244/498 (48%), Gaps = 6/498 (1%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKKP----SRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + + V+S E++++ + +++N + RR + A M
Sbjct: 87 EFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKM 146
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP++ ++L++ Y G+ + +A++ V +M E G +T++ ++ G A
Sbjct: 147 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + +R N + YG ++ C+ + + A L+ ME I+A + I++ +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D + + L +F+ ++ G P++++Y LI+ G+ S A ++ M I
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T++ LI+ F+K + +++D+++ + PD+ YN+++ FC +D+A
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF ++ ++ E+F M G + T+ LI GL
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ A ++ +M G+ P+ TY+ ++ G + G KA E F ++ ++LD++
Sbjct: 447 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
Y +++ CK+G++ + +S + + N YN +I G + + EA L+++M
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566
Query: 743 KQEGVQPDVHTYTSFINA 760
K++G P+ TY + I A
Sbjct: 567 KEDGPLPNSGTYNTLIRA 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/515 (25%), Positives = 229/515 (44%), Gaps = 36/515 (6%)
Query: 279 ENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLI 338
E Q + E P+ + MVN Y + G++ A Q + G++P YT+LI
Sbjct: 201 EMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLI 260
Query: 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398
Y +D++ A +M +G + V Y+ ++ G + A F + K+
Sbjct: 261 MGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECF 320
Query: 399 LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458
Y +I + C + A LV++MEE GI I Y +++D EK +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380
Query: 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518
++ E G P++I+Y LIN Y K G + A++V ++M+S + N +TY+ LI G+ K
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440
Query: 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRT 578
+ V ++ + PDVV YN++I C GN D A ++ M P T
Sbjct: 441 -SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499
Query: 579 FMPIIHGFARAGEMKRALEIFDMMRRSG-------------------------------- 606
+ +I ++ ++ A ++FD + + G
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559
Query: 607 ---CIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTG 663
C+P TFNALI GL ++++A + ++M G+ P T T ++H GD
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFD 619
Query: 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILI 723
A+ F ++ + G + D TY ++ C+ GR+ A + +M + + F Y+ LI
Sbjct: 620 HAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
Query: 724 DGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFI 758
G+ G A D++++M+ G +P HT+ S I
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI 714
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/469 (26%), Positives = 229/469 (48%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
+PS+ +G + + D+ + + F M+ I P++ +Y LI G+ M +A
Sbjct: 176 RPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQ 235
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412
+M + SL+TY+ ++ G+ K GN E + E K H + I + ++
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Query: 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSII 472
+ +E AE ++++M++ G + ++ DGY+ E L V+E + G +
Sbjct: 296 KAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAY 355
Query: 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532
+ L+N K GK+ KA E+ + G+ N Y+ +I+G+ + D E +
Sbjct: 356 TCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAM 415
Query: 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM 592
+ G+KPD + YN +IR FC +G M+ A V +M+ + P+ T+ +I G+ R E
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475
Query: 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652
+ +I M +G +P V ++ LI L + ++ +A + +M G+SP Y +
Sbjct: 476 DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNML 535
Query: 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712
+ G S G AF + ++ +G+EL++ TY L+ +G++ A + E+S + +
Sbjct: 536 IDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGL 595
Query: 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
+ F YN LI G+ G+V L ++MK+ G++P + TY I+ C
Sbjct: 596 KPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLC 644
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 779 | ||||||
| 224113413 | 941 | predicted protein [Populus trichocarpa] | 0.949 | 0.786 | 0.763 | 0.0 | |
| 225464410 | 929 | PREDICTED: pentatricopeptide repeat-cont | 0.970 | 0.813 | 0.748 | 0.0 | |
| 255549482 | 924 | pentatricopeptide repeat-containing prot | 0.872 | 0.735 | 0.802 | 0.0 | |
| 449435168 | 962 | PREDICTED: pentatricopeptide repeat-cont | 0.917 | 0.743 | 0.741 | 0.0 | |
| 296084463 | 927 | unnamed protein product [Vitis vinifera] | 0.944 | 0.793 | 0.725 | 0.0 | |
| 224097576 | 877 | predicted protein [Populus trichocarpa] | 0.884 | 0.785 | 0.737 | 0.0 | |
| 356577532 | 932 | PREDICTED: pentatricopeptide repeat-cont | 0.942 | 0.787 | 0.694 | 0.0 | |
| 356533316 | 918 | PREDICTED: pentatricopeptide repeat-cont | 0.928 | 0.787 | 0.7 | 0.0 | |
| 297806463 | 942 | pentatricopeptide repeat-containing prot | 0.962 | 0.796 | 0.683 | 0.0 | |
| 42567647 | 952 | pentatricopeptide (PPR) repeat-containin | 0.958 | 0.784 | 0.684 | 0.0 |
| >gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa] gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/766 (76%), Positives = 650/766 (84%), Gaps = 26/766 (3%)
Query: 8 SAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPK---------S 58
+ P FPH+P + TT++SFSLK PPP P P ++ RP +
Sbjct: 8 TTPRFPHSPTPFSS-----IATTTISFSLKPTPPPPPEPTNSSSIRRPKSLTPTPSTSST 62
Query: 59 SRPTRSKIPKNPFKNLLNSATTHVPSPPSH---SLSAKLRLSSKLSPPPPPPPPPPPAEQ 115
PT K PKNP K LLN + V S + SLS KLRLSSKLSPPPPPPPPPPP E
Sbjct: 63 PTPTTPKFPKNPLKTLLNPSKPSVTSTTTTNPLSLSTKLRLSSKLSPPPPPPPPPPPLEI 122
Query: 116 LQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQF 175
LQ P+++ ++ EN +P EF Q GKIF+GNLPNWIKKH + EFF QF
Sbjct: 123 LQTPEAETQEKTQKIENEAP---------RIEFYQNGKIFIGNLPNWIKKHELSEFFSQF 173
Query: 176 GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
GPIKNVILI+ +N E+N GFGF+IYDGP A KSAMKA EFDG+EFHGRVLTVKLDDGRR
Sbjct: 174 GPIKNVILIQSHNETERNAGFGFIIYDGPKAGKSAMKAEEFDGMEFHGRVLTVKLDDGRR 233
Query: 236 LKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPS 295
LK KAE R WV G +G+++RS WH+ERE + FRK ++TQPENWQAVVSAFERIKKPS
Sbjct: 234 LKAKAEERKNWVYGEDGKDYRSKWHEEREGSTKAFRKVLDTQPENWQAVVSAFERIKKPS 293
Query: 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVR 355
RREFGLMV YYARRGDMHRARQTFE+MRARGI+P+ HVYT+LIHAYAVGRDMEEALSCVR
Sbjct: 294 RREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVR 353
Query: 356 KMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415
KM EEGIEMSLVTYSI+VGGFAK GNAEAAD WF++AKERH LNA IYGNIIYA CQ
Sbjct: 354 KMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQAC 413
Query: 416 NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYG 475
NM+RAEALVR+MEEEGIDAP+DIYH MMDGYT+I NEEKCLIVF+RLKECGF+PS+I+YG
Sbjct: 414 NMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYG 473
Query: 476 CLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535
CLIN+YTKIGKVSKALEVSK+MKS GIKHNMKTYSMLINGFLKLKDW N FAVFEDV++D
Sbjct: 474 CLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKD 533
Query: 536 GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595
GLKPDVVLYNNII+AFCGMGNMDRAIH+VKEMQKER RPTSRTFMPIIHGFARAGEM+RA
Sbjct: 534 GLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRA 593
Query: 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655
LEIFDMMRRSGCIPTVHTFNAL+LGLVEKR+MEKA+EILDEM LAG+SP+EHTYTTIMHG
Sbjct: 594 LEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHG 653
Query: 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN 715
YA+LGDTGKAFEYFTK+RNEGL+LDVFTYEALLKACCKSGRMQSALAVT+EM+AQKIPRN
Sbjct: 654 YAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRN 713
Query: 716 TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
TFVYNILIDGWARRGD+WEAADLMQQM QEGVQPD+HTYTSFINAC
Sbjct: 714 TFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINAC 759
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1168 bits (3022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/786 (74%), Positives = 664/786 (84%), Gaps = 30/786 (3%)
Query: 3 NILSLSAPHFPHT---PATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLH---RPP 56
+I SL++P PHT A++L K H TT+ FS K SP P EP N R P
Sbjct: 2 DIFSLASPLCPHTTTFSASILAGKTH--PTTAFCFSSKT----SPEPDEPSNSSGHLRRP 55
Query: 57 KSSRPTRSKIP------KNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPP 110
K+ +P+ + P KNP KN++N + P+ P++ L+ KL LSS+LSPPPPPPP
Sbjct: 56 KTLKPSLNPTPPSPKTTKNPLKNIVNPTIS--PTNPAN-LTNKLWLSSQLSPPPPPPPTR 112
Query: 111 PPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVME 170
PP E + + +E+ + N S + E EFRQEGKIFVGNLPNW+KK+ V E
Sbjct: 113 PPQETIDD------NEVTVSSNLDNLCSDGSP--EIEFRQEGKIFVGNLPNWVKKNEVSE 164
Query: 171 FFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
FFRQFGPI+NVILIKG+N+ ++N GFGFVIY GP A SAM+AVEFDGVEFHGRVLTVKL
Sbjct: 165 FFRQFGPIENVILIKGHNDNQRNAGFGFVIYGGPMASGSAMRAVEFDGVEFHGRVLTVKL 224
Query: 231 DDGRRLKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFER 290
DDGRRL+ ++E RARWV G+ G + RS WH+ERE R++FRK +ET+PENWQAVV AFER
Sbjct: 225 DDGRRLRGRSEERARWVQGH-GVDQRSKWHEERESSRKDFRKVLETEPENWQAVVQAFER 283
Query: 291 IKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEA 350
IKKPSR+EFGLMV YYARRGDMH AR TFE+MRARGIEPT HVYT+LIHAYAVGRDMEEA
Sbjct: 284 IKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEA 343
Query: 351 LSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410
LSCVRKMKEEGIEMSLVTYSI+VGGFAK+ +AEAADHWF+EAKERH TLNAIIYGNIIYA
Sbjct: 344 LSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYA 403
Query: 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS 470
CQ NM +AEALVR+MEEEGIDAPIDIYH MMDGYTIIGNEEKCLIVF+RLKECGF+PS
Sbjct: 404 HCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPS 463
Query: 471 IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530
+ISYGCLINLY KIGKVSKALEVSK+M+ +GIKHNMKTYSMLINGF++LKDWAN FAVFE
Sbjct: 464 VISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFE 523
Query: 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590
DV++DGLKPDVVLYNNIIRAFCGMGNMDRAI VKEMQKERHRPT+RTFMPIIHGFAR+G
Sbjct: 524 DVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSG 583
Query: 591 EMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT 650
+M+RALEIFDMMR SGCIPTVHTFNALILGLVEK QMEKA+EILDEM+LAGISPNEHTYT
Sbjct: 584 DMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYT 643
Query: 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710
TIMHGYASLGDTGKAFEYFTKL+ EGLELDV+TYEALLKACCKSGRMQSALAVT+EMS+Q
Sbjct: 644 TIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQ 703
Query: 711 KIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRN 770
KIPRNTFVYNILIDGWARRGDVWEAA+LMQQMKQEGVQPD+HTYTSFINAC + QR
Sbjct: 704 KIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRA 763
Query: 771 GRSWSE 776
++ E
Sbjct: 764 TKTIQE 769
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/698 (80%), Positives = 622/698 (89%), Gaps = 18/698 (2%)
Query: 69 NPFKNLLNSATTHVPSPP-----SHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQG 123
NPFK LLN + HVPSPP +HSLS+KLRLS KL P PPPP P PP + ++Q
Sbjct: 87 NPFKILLNQPS-HVPSPPPQTTNTHSLSSKLRLSGKLFPLPPPPLPLPPPPPVPRAKTQ- 144
Query: 124 NDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL 183
D+ + E+ P EFRQEGKIF+GNLPNWIKKH + EFFRQFGPIK VIL
Sbjct: 145 VDKHQENESHKP-----------EFRQEGKIFIGNLPNWIKKHEISEFFRQFGPIKKVIL 193
Query: 184 IKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVR 243
IKGYN E+N GFGFVIYD AEKSA KAVEFDG+EFHGR+LTVKLDDGRRLK KA+ R
Sbjct: 194 IKGYNETERNAGFGFVIYDDKTAEKSATKAVEFDGMEFHGRILTVKLDDGRRLKAKADER 253
Query: 244 ARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMV 303
RWV G +G+++ S WH+ER+ R+ FR+ +ETQPENWQ VVSAFERIKKPSRRE+GLMV
Sbjct: 254 KRWVEGEDGDDYESKWHEERDGSRKAFRRVLETQPENWQDVVSAFERIKKPSRREYGLMV 313
Query: 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE 363
+YYARRGDMHRARQTFE+MRARGIEPT HVYT+LIHAYAVGRDMEEALSC RKMKEEG+E
Sbjct: 314 SYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVE 373
Query: 364 MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423
MSLVTYSIIVGGFAK+GNA+AAD WF+EAK+RH+ +NAIIYGN+IYA CQT NM++AEAL
Sbjct: 374 MSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEAL 433
Query: 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK 483
VR+ME EGIDAPIDIYH MMDGYT++GNEEKCL VFERLKECGF+PS++SYGCLINLY K
Sbjct: 434 VREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAK 493
Query: 484 IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543
+GK+SKALEVSK+M+S+GIKHNMKTYSMLINGFLKLKDWAN FA+FEDV++DGLKPDVVL
Sbjct: 494 VGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVL 553
Query: 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603
YNNIIRAFCGMG MDRAI +VKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL++FDMMR
Sbjct: 554 YNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMR 613
Query: 604 RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTG 663
RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM LAG+SPNEHTYTTIMHGYA+LGDTG
Sbjct: 614 RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTG 673
Query: 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILI 723
KAFEYFTKLR+EGL+LDV+TYEALLKACCKSGRMQSALAVTKEMSAQ IPRNTFVYNILI
Sbjct: 674 KAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILI 733
Query: 724 DGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
DGWARRGDVWEAADLMQQMKQ GV+PD+HTYTSFINAC
Sbjct: 734 DGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINAC 771
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1133 bits (2930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/739 (74%), Positives = 629/739 (85%), Gaps = 24/739 (3%)
Query: 49 PHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVP---------SPPSHSLSAKLRLSSK 99
P L + S + T S++P NP +NL+ SA +VP P SHSLS KL LSSK
Sbjct: 70 PQTL-KTTSSPKRTTSQVPSNPLRNLVGSA--YVPILPPPPPPPPPVSHSLSEKLWLSSK 126
Query: 100 LSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNL 159
LSPP + E + +EI + E+ + SS + E +FRQEGKIFVGNL
Sbjct: 127 LSPP---------PPPISELLEEDRNEIEEIESDNSSSK---GRREVQFRQEGKIFVGNL 174
Query: 160 PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219
PNWIKKH V EFFRQFGP+KNVILIKG+N E+N G+GF+IYDG A+KSA+KAVEFDGV
Sbjct: 175 PNWIKKHEVQEFFRQFGPVKNVILIKGHNAVERNAGYGFIIYDGLTADKSAIKAVEFDGV 234
Query: 220 EFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPE 279
EFHGRVLTVKLDDGRRLK K + RARW+ G++ E+RS WH+ER+ R RK +ET+PE
Sbjct: 235 EFHGRVLTVKLDDGRRLKEKTDERARWMEGDDSVEYRSHWHEERDKARNGLRKVIETEPE 294
Query: 280 NWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIH 339
NWQAVVSAFERIKKPSR+E+GLMVNYY RRGDMHRAR+TFE MRARGIEP+ HVYTNLIH
Sbjct: 295 NWQAVVSAFERIKKPSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIH 354
Query: 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL 399
AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI+V GFAK GNAE+ADHWF+EAKE+H++L
Sbjct: 355 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSL 414
Query: 400 NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459
NAIIYGNIIYA CQ NM++AEALVR+MEEEGIDAPIDIYH MMDGYT++G+E+KCL+VF
Sbjct: 415 NAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVF 474
Query: 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL 519
ER KECG +PS+I+YGCLINLY K+GKVSKALEVSK M+ +GIKHNMKTYSMLINGFLKL
Sbjct: 475 ERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKL 534
Query: 520 KDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTF 579
KDWAN FA+FED+++DG+KPDVVLYNNII AFCGMG MDRA+ VKEMQK+RH+PT+RTF
Sbjct: 535 KDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTF 594
Query: 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL 639
MPIIHGFAR GEMK+AL++FDMMR SGCIPTVHT+NALILGLVEKR+MEKA +ILDEMTL
Sbjct: 595 MPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTL 654
Query: 640 AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699
AG+SPNEHTYTTIMHGYASLGDTGKAF YFTKLR+EGL+LDV+TYEALLKACCKSGRMQS
Sbjct: 655 AGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQS 714
Query: 700 ALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759
ALAVTKEMSAQ IPRNTF+YNILIDGWARRGD+WEAADLMQQMK+EGVQPD+HTYTSFIN
Sbjct: 715 ALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFIN 774
Query: 760 ACKCSKSNQRNGRSWSEAK 778
AC + QR ++ E K
Sbjct: 775 ACSKAGDMQRATKTIEEMK 793
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/788 (72%), Positives = 646/788 (81%), Gaps = 52/788 (6%)
Query: 1 MDNILSLSAPHFPHT---PATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLH---R 54
M +I SL++P PHT A++L K H TT+ FS K SP P EP N R
Sbjct: 1 MMDIFSLASPLCPHTTTFSASILAGKTH--PTTAFCFSSKT----SPEPDEPSNSSGHLR 54
Query: 55 PPKSSRPTRSKIP------KNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPP 108
PK+ +P+ + P KNP KN++N + P+ P++ L+ KL LSS+LSPPPPPPP
Sbjct: 55 RPKTLKPSLNPTPPSPKTTKNPLKNIVNPTIS--PTNPAN-LTNKLWLSSQLSPPPPPPP 111
Query: 109 PPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLV 168
PP E + + +E+ + N S E EFRQEGKIFVGNLPNW+KK+ V
Sbjct: 112 TRPPQETIDD------NEVTVSSNLDNLCS--DGSPEIEFRQEGKIFVGNLPNWVKKNEV 163
Query: 169 MEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
EFFRQFGPI+NVILIKG+N+ ++N GFGF FHGRVLTV
Sbjct: 164 SEFFRQFGPIENVILIKGHNDNQRNAGFGF----------------------FHGRVLTV 201
Query: 229 KLDDGRRLKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAF 288
KLDDGRRL+ ++E RARWV G+ G + RS WH+ERE R++FRK +ET+PENWQAVV AF
Sbjct: 202 KLDDGRRLRGRSEERARWVQGH-GVDQRSKWHEERESSRKDFRKVLETEPENWQAVVQAF 260
Query: 289 ERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDME 348
ERIKKPSR+EFGLMV YYARRGDMH AR TFE+MRARGIEPT HVYT+LIHAYAVGRDME
Sbjct: 261 ERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDME 320
Query: 349 EALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408
EALSCVRKMKEEGIEMSLVTYSI+VGGFAK+ +AEAADHWF+EAKERH TLNAIIYGNII
Sbjct: 321 EALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNII 380
Query: 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS 468
YA CQ NM +AEALVR+MEEEGIDAPIDIYH MMDGYTIIGNEEKCLIVF+RLKECGF+
Sbjct: 381 YAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFT 440
Query: 469 PSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAV 528
PS+ISYGCLINLY KIGKVSKALEVSK+M+ +GIKHNMKTYSMLINGF++LKDWAN FAV
Sbjct: 441 PSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAV 500
Query: 529 FEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588
FEDV++DGLKPDVVLYNNIIRAFCGMGNMDRAI VKEMQKERHRPT+RTFMPIIHGFAR
Sbjct: 501 FEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFAR 560
Query: 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHT 648
+G+M+RALEIFDMMR SGCIPTVHTFNALILGLVEK QMEKA+EILDEM+LAGISPNEHT
Sbjct: 561 SGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHT 620
Query: 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708
YTTIMHGYASLGDTGKAFEYFTKL+ EGLELDV+TYEALLKACCKSGRMQSALAVT+EMS
Sbjct: 621 YTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMS 680
Query: 709 AQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQ 768
+QKIPRNTFVYNILIDGWARRGDVWEAA+LMQQMKQEGVQPD+HTYTSFINAC + Q
Sbjct: 681 SQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQ 740
Query: 769 RNGRSWSE 776
R ++ E
Sbjct: 741 RATKTIQE 748
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa] gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/750 (73%), Positives = 619/750 (82%), Gaps = 61/750 (8%)
Query: 31 SLSFSLKQPPPPSPTPPEPHNLHRPPK-------------SSRPTRSKIPKNPFKNLLNS 77
S+SFSLK PPPP P P ++ RP + PT KIP+NP K LLN
Sbjct: 31 SISFSLKPPPPPPPEPTNSSSIRRPKSLNPTPAPTPTPTPTPAPTTPKIPQNPLKTLLNP 90
Query: 78 ATTHVPSPPSH------SLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAE 131
+ + S + SLS KLRLSSKLS PPPPPPP E + P+++ E E
Sbjct: 91 SKPQITSSSATSTTDPLSLSTKLRLSSKLS---HPPPPPPPLETTRTPEAE-TQETRKVE 146
Query: 132 NRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
N +P +T+F Q+GKIF+GNLPNWIKKH + EFFRQFGPIKNV+LI G+N E
Sbjct: 147 NEAP---------KTDFCQKGKIFIGNLPNWIKKHELSEFFRQFGPIKNVVLINGHNETE 197
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNN 251
+N GFGF+IYDGP AEKSAMKA EFDG+EFHGRVLTVKLDDGRRLK KAE R WV G +
Sbjct: 198 RNAGFGFIIYDGPTAEKSAMKAEEFDGMEFHGRVLTVKLDDGRRLKAKAEERKNWVDGED 257
Query: 252 GEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD 311
G ++RS WH+ERE + FRK ++TQPENWQAVVSAFERIKKP+RREFGLMV YYARRGD
Sbjct: 258 GVDYRSKWHEEREGSTKAFRKVLDTQPENWQAVVSAFERIKKPARREFGLMVGYYARRGD 317
Query: 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371
MHRARQTFE+MR RGI P+ HVYT+LIHAYAVGRDMEEALSCVRKMKEEG+EMSLVTYSI
Sbjct: 318 MHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSI 377
Query: 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431
+VGGFAK+GNA+ Q+ NM+RAE+LVR+MEEEG
Sbjct: 378 VVGGFAKIGNAD-----------------------------QSCNMDRAESLVREMEEEG 408
Query: 432 IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491
IDAPIDIYH MM+GYT+IGNEEKCLIVF+RLKECGF+PS+ISYGCLIN+YTK+GKVSKAL
Sbjct: 409 IDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKAL 468
Query: 492 EVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAF 551
EVSK+M+S+GIKHNMKTYSMLINGFLKLKDW N F VFEDV++DGLKPDVVLYNNII+AF
Sbjct: 469 EVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAF 528
Query: 552 CGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611
CGMGNMDRAIH+VKEMQK+RHRPTSRTFMPIIHGFARAGEM+RALEIFDMMRRSGCIPTV
Sbjct: 529 CGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTV 588
Query: 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTK 671
HTFNAL+LGLVEKRQMEKA+EILDEM LAG+SP+EHTYTTIM+GYA+LGDTGKAFEYFTK
Sbjct: 589 HTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTK 648
Query: 672 LRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731
LRNEGLELDVFTYEALLKACCKSGRMQSALAVT+EMSAQ IPRNTFVYNILIDGWARRGD
Sbjct: 649 LRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGD 708
Query: 732 VWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
VWEAADLMQQMKQEGVQPD+HTYTSFINAC
Sbjct: 709 VWEAADLMQQMKQEGVQPDIHTYTSFINAC 738
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/769 (69%), Positives = 624/769 (81%), Gaps = 35/769 (4%)
Query: 5 LSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLK------QPPPPSPTPPEPHNLHRPPKS 58
LS S H T + HHP ++S + + +PP S P RP KS
Sbjct: 4 LSFSTSHLSVPSNTTIFSPKHHPPSSSAATTTTTVSFSLKPPSDSNNSATPR---RPSKS 60
Query: 59 SRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQE 118
+ T + P NP P+P S+ L+ KL L+SKLSPP
Sbjct: 61 LKATPTTPPSNP-----------KPAPISNPLANKLWLTSKLSPP---------PPPPPP 100
Query: 119 PQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPI 178
P + + EI +++ + ++FRQ GKIFVGNLP W+KK V EFFRQFGPI
Sbjct: 101 PPPEIDSEIETETDKASGDGANSDSRNSDFRQPGKIFVGNLPAWVKKPQVAEFFRQFGPI 160
Query: 179 KNVILIKGYNNFEKNVGFGFVIYDG----PAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234
++VILIKG+++ E++ GF FVIYDG A+K+AM+AVEFDGVEFHGRVLTVKLDDG+
Sbjct: 161 RSVILIKGHHDTERSAGFAFVIYDGVESDDEADKAAMRAVEFDGVEFHGRVLTVKLDDGK 220
Query: 235 RLKNKAEVRARWVAGNNGE--EFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIK 292
R++ ++E +ARW+ GN G+ E+ STWH+ER+ R+ F+K +ETQPENWQAVV+AFERIK
Sbjct: 221 RMRERSEEKARWLQGNGGDKGEYPSTWHEERDGSRKSFQKILETQPENWQAVVTAFERIK 280
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
KP+R+E+GLMV YY RRGDMH ARQTFE+MRARGIEP+ HVY++LIHAYAVGRDMEEAL
Sbjct: 281 KPARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALH 340
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412
CVRKMKEEGIEM++VTYSIIVGGFAKMGNA+AADHWFEEAKE+ +LNA+IYG IIYA C
Sbjct: 341 CVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHC 400
Query: 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSII 472
Q NM+RAEALVR+MEE+GIDAPIDIYH MMDGYT+IGNEEKCLIVF+RLKECGF PS+I
Sbjct: 401 QICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVI 460
Query: 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532
SYGCLINLYTK+GKVSKALE+SK+MK SGIKHNMKTYSMLINGFLKLKDWAN F+VFED
Sbjct: 461 SYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDF 520
Query: 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM 592
+DGLKPDVVLYNNII AFCGMGNMDRAI +V++MQKERHRPT+RTF+PIIHGFARAGEM
Sbjct: 521 TKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEM 580
Query: 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652
+RALEIFDMMRRSGCIPTVHT+NALILGLVEKRQM KA+ ILDEM +AG+ PNEHTYTT+
Sbjct: 581 RRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTL 640
Query: 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712
M GYASLGDT KAF+YFT LRNEGLE+DV+TYEALLK+CCKSGRMQSALAVTKEMSA+ I
Sbjct: 641 MQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNI 700
Query: 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
PRNTFVYNILIDGWARRGDVWEAADLMQQM++EG+ PD+HTYTSFINAC
Sbjct: 701 PRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINAC 749
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1090 bits (2818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/770 (70%), Positives = 632/770 (82%), Gaps = 47/770 (6%)
Query: 5 LSLSAPHFPHTPATLLTHKPHHP-----TTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSS 59
LS S H T L HHP TT++SFS K PP S + P +PPK++
Sbjct: 4 LSFSTSHLSIPTKTTLFSPKHHPPSASAATTTVSFSHK-PPSDSNSAATPRRPSKPPKAT 62
Query: 60 RPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQ-E 118
T PPS+ L+ KL L+SKLSPPPPPPPPPPP ++ E
Sbjct: 63 PIT----------------------PPSNPLANKLWLTSKLSPPPPPPPPPPPPPEIDTE 100
Query: 119 PQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPI 178
+ + E D+++R+ +FRQ GKIFVGNLP W+KK V EFFRQFGPI
Sbjct: 101 TKKESGGEGADSDSRN-----------FDFRQPGKIFVGNLPAWVKKPQVAEFFRQFGPI 149
Query: 179 KNVILIKGYNNFEKNVGFGFVIYDG-----PAAEKSAMKAVEFDGVEFHGRVLTVKLDDG 233
++VIL KG+++ E++ GF FVIYDG A+K+AM+AVEFDGVEFHGRVLTVKLDDG
Sbjct: 150 RSVILFKGHHDTERSAGFAFVIYDGGEGDETKADKAAMRAVEFDGVEFHGRVLTVKLDDG 209
Query: 234 RRLKNKAEVRARWVAGNNGE--EFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERI 291
++++ ++E RARW+ GN G+ E+ ST HKER+ R+ F+K +ETQPENWQAVV+AFERI
Sbjct: 210 KKMRERSEERARWLQGNGGDKGEYPSTRHKERDGSRKSFQKVLETQPENWQAVVTAFERI 269
Query: 292 KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEAL 351
KKP+R+E+GLMV YYARRGDMH ARQTFE+M+ARGIEP+ HVY++LIHAYAVGRDMEEAL
Sbjct: 270 KKPARKEYGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEAL 329
Query: 352 SCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411
CVRKMKEEGIEM++VTYSIIVGGFAKMG A+AADHWF+EAKE+ +LNA+ YG+IIYA
Sbjct: 330 HCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSIIYAH 389
Query: 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI 471
CQT NM+RAEALVR+ME +GIDAPIDIYH MMDGYT+IGNEEKCLIVF+RLKECGFSPS+
Sbjct: 390 CQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSV 449
Query: 472 ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531
ISYGCLINLYTKIGKVSKAL++SK+MK SGIKHNMKTYSMLINGFLKLKDWAN F+VFED
Sbjct: 450 ISYGCLINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFED 509
Query: 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGE 591
+DGLKPDVVLYNNII AFCGM NMDRAI +VK+MQKER+RPT+RTF+PIIHGFARAGE
Sbjct: 510 FTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGE 569
Query: 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651
M+RALEIFDMMRRSGCIPTVHT+NALILGLVEKR+M KA+ ILD+M +AG+ PNEHTYTT
Sbjct: 570 MRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTT 629
Query: 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711
+M GYASLGDT KAF+YF+ LRNEGLE+DV+TYEALLK+CCKSGRMQSALAVTKEMSA+
Sbjct: 630 LMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKN 689
Query: 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
IPRNTFVYNILIDGWARRGDVWEAADLMQQM++EGV PD+HTYTSF+NAC
Sbjct: 690 IPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNAC 739
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1082 bits (2798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/802 (68%), Positives = 637/802 (79%), Gaps = 52/802 (6%)
Query: 1 MDN---ILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPK 57
MDN +LSLSAPHFP++ L H P + SL + P PP P P +L RP K
Sbjct: 1 MDNGGSVLSLSAPHFPYSATILRRHSPMASISFSLKPPPQPPQPPPEPPESPPDLRRPEK 60
Query: 58 S------------SRPTRSKIPKNPFKNLLNSATTHVPSPPSHS------------LSAK 93
S ++ + NP K+L N ++ SP S L++K
Sbjct: 61 SLGSSSSSSSPSPIPSPKTPLKINPLKDLTNRSSV---SPLVQSEVSSKVSSFGSSLASK 117
Query: 94 LRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGK 153
LRLSSKLSPPPPPPPP E+ Q ND P E T + + EFRQEGK
Sbjct: 118 LRLSSKLSPPPPPPPPL--VEETQFRDDMRNDTKPPEEE--------TPKPQPEFRQEGK 167
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IFVGNLP WIKK EFFRQFGPI+NVILIKG++ EKN GFGF+IY AAEKSAMKA
Sbjct: 168 IFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIY---AAEKSAMKA 224
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEE-----FRSTWHKEREWHRR 268
VEFDGVEFHGR+LTVKLDDG+RLK KAE R RWV GEE +S+WH+ERE R+
Sbjct: 225 VEFDGVEFHGRILTVKLDDGKRLKTKAEQRVRWV--QEGEEDAKMSNKSSWHQEREGSRK 282
Query: 269 EFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIE 328
++ ++T +NWQAV+SAFE+I KPSR EFGLMV +Y RRGDMHRAR+TFE MRARGI
Sbjct: 283 SLQRILDTNGDNWQAVISAFEKINKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGIT 342
Query: 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388
PT +YT+LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS+IVGGF+K GNAEAADHW
Sbjct: 343 PTSRIYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHW 402
Query: 389 FEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI 448
F+EAK H TLNA IYG IIYA CQT NMERAEALVR+MEEEGIDAPI IYH MMDGYT+
Sbjct: 403 FDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTM 462
Query: 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKT 508
+ +E+K LIVF+RLKECGF+P++++YGCLINLYTK+GK+SKALEVS+VMK G+KHN+KT
Sbjct: 463 VADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKT 522
Query: 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQ 568
YSM+INGF+KLKDWAN FAVFED++++G+KPDV+LYNNII AFCGMGNMDRAI VKEMQ
Sbjct: 523 YSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQ 582
Query: 569 KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQME 628
K RHRPT+RTFMPII+GFA++G+M+R+LE+FDMMRR GC+PTVHTFNALI GLVEKRQME
Sbjct: 583 KLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQME 642
Query: 629 KAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALL 688
KA+EILDEMTLAG+S NEHTYT IM GYAS+GDTGKAFEYFT+L+NEGLE+D+FTYEALL
Sbjct: 643 KAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALL 702
Query: 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ 748
KACCKSGRMQSALAVTKEMSA+ IPRN+FVYNILIDGWARRGDVWEAADL+QQMK+EGV+
Sbjct: 703 KACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVK 762
Query: 749 PDVHTYTSFINACKCSKSNQRN 770
PD+HTYTSFI+A CSK+ N
Sbjct: 763 PDIHTYTSFISA--CSKAGDMN 782
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04810, chloroplastic; AltName: Full=Maize PPR4 homolog; Short=AtPPR4; Flags: Precursor gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis thaliana] gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/804 (68%), Positives = 647/804 (80%), Gaps = 57/804 (7%)
Query: 1 MDN---ILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPH-NLHRPP 56
MDN +LSLSAPHFP++ L H P S+SFSLKQPPP P PPE +L RP
Sbjct: 1 MDNGGSVLSLSAPHFPYSATILRRHSP----VASISFSLKQPPPQPPEPPESPPDLRRPE 56
Query: 57 KSSRPT------------RSKIPKNPFKNLLNSATTHVPSPPSHS------------LSA 92
KS + ++ + NP K L N ++ SP S L++
Sbjct: 57 KSIGSSSSSSSPSPIPSPKTPLKINPLKGLTNRSSV---SPLVQSEVSSKVSSFGSSLAS 113
Query: 93 KLRLSSKLSPPPPPPPPPPPAEQLQ-EPQSQGNDEIPDAENRSPSSSLATSQEETEFRQE 151
KLRLSSKLSPPPPPPPPPP E Q + + + + P+ E R+P + EFRQE
Sbjct: 114 KLRLSSKLSPPPPPPPPPPVEETTQFRDEFRSDTKPPEEETRNP---------QQEFRQE 164
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
GKIFVGNLP WIKK EFFRQFGPI+NVILIKG++ EKN GFGF+IY AAEKSAM
Sbjct: 165 GKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIY---AAEKSAM 221
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEE-----FRSTWHKEREWH 266
KAVEFDGVEFHGR+LTVKLDDG+RLK KAE R RWV GEE +S+WH+ERE
Sbjct: 222 KAVEFDGVEFHGRILTVKLDDGKRLKTKAEQRVRWV--EEGEEDTKMSNKSSWHQEREGS 279
Query: 267 RREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARG 326
R+ ++ ++T +NWQAV+SAFE+I KPSR EFGLMV +Y RRGDMHRAR+TFE MRARG
Sbjct: 280 RKSLQRILDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARG 339
Query: 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386
I PT +YT+LIHAYAVGRDM+EALSCVRKMKEEGIEMSLVTYS+IVGGF+K G+AEAAD
Sbjct: 340 ITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAAD 399
Query: 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446
+WF+EAK H TLNA IYG IIYA CQT NMERAEALVR+MEEEGIDAPI IYH MMDGY
Sbjct: 400 YWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGY 459
Query: 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506
T++ +E+K L+VF+RLKECGF+P++++YGCLINLYTK+GK+SKALEVS+VMK G+KHN+
Sbjct: 460 TMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNL 519
Query: 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKE 566
KTYSM+INGF+KLKDWAN FAVFED++++G+KPDV+LYNNII AFCGMGNMDRAI VKE
Sbjct: 520 KTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKE 579
Query: 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626
MQK RHRPT+RTFMPIIHG+A++G+M+R+LE+FDMMRR GC+PTVHTFN LI GLVEKRQ
Sbjct: 580 MQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ 639
Query: 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686
MEKA+EILDEMTLAG+S NEHTYT IM GYAS+GDTGKAFEYFT+L+NEGL++D+FTYEA
Sbjct: 640 MEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA 699
Query: 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746
LLKACCKSGRMQSALAVTKEMSA+ IPRN+FVYNILIDGWARRGDVWEAADL+QQMK+EG
Sbjct: 700 LLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEG 759
Query: 747 VQPDVHTYTSFINACKCSKSNQRN 770
V+PD+HTYTSFI+A CSK+ N
Sbjct: 760 VKPDIHTYTSFISA--CSKAGDMN 781
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 779 | ||||||
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.970 | 0.794 | 0.655 | 2.4e-273 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.590 | 0.610 | 0.270 | 3.8e-53 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.631 | 0.782 | 0.248 | 5.1e-51 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.586 | 0.626 | 0.261 | 1.1e-50 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.599 | 0.639 | 0.283 | 4.3e-50 | |
| TAIR|locus:2132937 | 704 | RPF5 "AT4G28010" [Arabidopsis | 0.586 | 0.649 | 0.269 | 5.8e-50 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.631 | 0.776 | 0.232 | 1.2e-49 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.622 | 0.840 | 0.242 | 1.2e-49 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.593 | 0.733 | 0.244 | 1.5e-49 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.602 | 0.574 | 0.262 | 2e-49 |
| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2628 (930.2 bits), Expect = 2.4e-273, P = 2.4e-273
Identities = 521/795 (65%), Positives = 607/795 (76%)
Query: 1 MDN---ILSLSAPHFXXXXXXXXXXXXXXXXXXSLSFSLKQXXXXXXXXXXXH-NLHRPP 56
MDN +LSLSAPHF S+SFSLKQ +L RP
Sbjct: 1 MDNGGSVLSLSAPHFPYSATILRRHSPVA----SISFSLKQPPPQPPEPPESPPDLRRPE 56
Query: 57 KS-------SRPTRSKIPKNPFK-NLLNSATTHVPSPPXXXXXXXXXXXXXXXXXXXXXX 108
KS S P+ PK P K N L T P
Sbjct: 57 KSIGSSSSSSSPSPIPSPKTPLKINPLKGLTNRSSVSPLVQSEVSSKVSSFGSSLASKLR 116
Query: 109 XXXXAEQLQEPQ--------SQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLP 160
P +Q DE ++ + P Q+E FRQEGKIFVGNLP
Sbjct: 117 LSSKLSPPPPPPPPPPVEETTQFRDEFR-SDTKPPEEETRNPQQE--FRQEGKIFVGNLP 173
Query: 161 NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220
WIKK EFFRQFGPI+NVILIKG++ EKN GFGF+IY AAEKSAMKAVEFDGVE
Sbjct: 174 TWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIY---AAEKSAMKAVEFDGVE 230
Query: 221 FHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEF-----RSTWHKEREWHRREFRKAVE 275
FHGR+LTVKLDDG+RLK KAE R RWV GEE +S+WH+ERE R+ ++ ++
Sbjct: 231 FHGRILTVKLDDGKRLKTKAEQRVRWV--EEGEEDTKMSNKSSWHQEREGSRKSLQRILD 288
Query: 276 TQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYT 335
T +NWQAV+SAFE+I KPSR EFGLMV +Y RRGDMHRAR+TFE MRARGI PT +YT
Sbjct: 289 TNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYT 348
Query: 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395
+LIHAYAVGRDM+EALSCVRKMKEEGIEMSLVTYS+IVGGF+K G+AEAAD+WF+EAK
Sbjct: 349 SLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRI 408
Query: 396 HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455
H TLNA IYG IIYA CQT NMERAEALVR+MEEEGIDAPI IYH MMDGYT++ +E+K
Sbjct: 409 HKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKG 468
Query: 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLING 515
L+VF+RLKECGF+P++++YGCLINLYTK+GK+SKALEVS+VMK G+KHN+KTYSM+ING
Sbjct: 469 LVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMING 528
Query: 516 FLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT 575
F+KLKDWAN FAVFED++++G+KPDV+LYNNII AFCGMGNMDRAI VKEMQK RHRPT
Sbjct: 529 FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT 588
Query: 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD 635
+RTFMPIIHG+A++G+M+R+LE+FDMMRR GC+PTVHTFN LI GLVEKRQMEKA+EILD
Sbjct: 589 TRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILD 648
Query: 636 EMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695
EMTLAG+S NEHTYT IM GYAS+GDTGKAFEYFT+L+NEGL++D+FTYEALLKACCKSG
Sbjct: 649 EMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSG 708
Query: 696 RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755
RMQSALAVTKEMSA+ IPRN+FVYNILIDGWARRGDVWEAADL+QQMK+EGV+PD+HTYT
Sbjct: 709 RMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYT 768
Query: 756 SFINACKCSKSNQRN 770
SFI+AC SK+ N
Sbjct: 769 SFISAC--SKAGDMN 781
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 126/466 (27%), Positives = 240/466 (51%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
KP F +++ R + A E+M + G+ P +T ++ Y D++ AL
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-NAIIYGNIIYAQ 411
+M E G S V+ ++IV GF K G E A ++ +E + + + ++
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL--KECGFSP 469
C+ +++ A ++ M +EG D + Y+ ++ G +G ++ + V +++ ++C SP
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC--SP 363
Query: 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529
+ ++Y LI+ K +V +A E+++V+ S GI ++ T++ LI G ++ +F
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 530 EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589
E++ G +PD YN +I + C G +D A++++K+M+ + T+ +I GF +A
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483
Query: 590 GEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTY 649
+ + A EIFD M G T+N LI GL + R++E A +++D+M + G P+++TY
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543
Query: 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709
+++ + GD KA + + + G E D+ TY L+ CK+GR++ A + + +
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQM 603
Query: 710 QKIPRNTFVYNILIDGWARRGDVWEAADLMQQM-KQEGVQPDVHTY 754
+ I YN +I G R+ EA +L ++M +Q PD +Y
Sbjct: 604 KGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSY 649
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 124/498 (24%), Positives = 240/498 (48%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKKP----SRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + V+S ER++ + +++N + RR + A M
Sbjct: 82 EFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKM 141
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP + ++L++ Y G+ + EA++ V +M + + VT++ ++ G A
Sbjct: 142 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKA 201
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + R + YG ++ C+ +++ A +L++ ME+ I+A + IY +
Sbjct: 202 SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTI 261
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D N L +F + G P++++Y LI G+ S A + M I
Sbjct: 262 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T+S LI+ F+K +++++++ + PD+ Y+++I FC +D A H
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF +A ++ +E+F M + G + T+N LI GL
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ + A +I +M G+ P+ TY+ ++ G G KA F L+ +E D++
Sbjct: 442 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
TY +++ CK+G+++ + +S + + N +Y +I G+ R+G EA L ++M
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 743 KQEGVQPDVHTYTSFINA 760
K++G P+ TY + I A
Sbjct: 562 KEDGTLPNSGTYNTLIRA 579
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| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 121/463 (26%), Positives = 220/463 (47%)
Query: 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360
+MVN + G M + ++ +G+ P + Y LI AY+ MEEA + M +
Sbjct: 240 IMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGK 299
Query: 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERA 420
G + TY+ ++ G K G E A F E + ++ Y +++ C+ ++
Sbjct: 300 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVET 359
Query: 421 EALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480
E + DM + + + MM +T GN +K L+ F +KE G P + Y LI
Sbjct: 360 EKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419
Query: 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD 540
Y + G +S A+ + M G ++ TY+ +++G K K +F ++ L PD
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479
Query: 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIF- 599
+I C +GN+ A+ + ++M+++R R T+ ++ GF + G++ A EI+
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539
Query: 600 DMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL 659
DM+ + +PT +++ L+ L K + +A + DEM I P +++ GY
Sbjct: 540 DMVSKE-ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598
Query: 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK---IPRNT 716
G+ + K+ +EG D +Y L+ + M A + K+M ++ +P +
Sbjct: 599 GNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVP-DV 657
Query: 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759
F YN ++ G+ R+ + EA ++++M + GV PD TYT IN
Sbjct: 658 FTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMIN 700
|
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| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 4.3e-50, P = 4.3e-50
Identities = 135/477 (28%), Positives = 237/477 (49%)
Query: 293 KPSRREFGLMVNYYARRGDMHR-ARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEAL 351
+P+ + + +++ G+ H+ A F +M +R I PTL + ++ A+ +++ AL
Sbjct: 179 EPTFKSYNVVLEILVS-GNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSAL 237
Query: 352 SCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411
S +R M + G + V Y ++ +K A EE +A + ++I
Sbjct: 238 SLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297
Query: 412 CQTRNMERAEALVRDMEEEGIDAPIDI-YHMMMDGYTIIGNEEKCLIVFERLKECGFSPS 470
C+ + A +V M G AP DI Y +M+G IG + +F R+ + P
Sbjct: 298 CKFDRINEAAKMVNRMLIRGF-APDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PE 352
Query: 471 IISYGCLINLYTKIGKVSKALEV-SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529
I+ + LI+ + G++ A V S ++ S GI ++ TY+ LI G+ K V
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 530 EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589
D+ G KP+V Y ++ FC +G +D A +++ EM + +P + F +I F +
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472
Query: 590 GEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTY 649
+ A+EIF M R GC P V+TFN+LI GL E +++ A+ +L +M G+ N TY
Sbjct: 473 HRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY 532
Query: 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709
T+++ + G+ +A + ++ +G LD TY +L+K C++G + A ++ ++M
Sbjct: 533 NTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 592
Query: 710 QKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINA-CKCSK 765
+ NILI+G R G V EA + ++M G PD+ T+ S IN C+ +
Sbjct: 593 DGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGR 649
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| TAIR|locus:2132937 RPF5 "AT4G28010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 125/463 (26%), Positives = 231/463 (49%)
Query: 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360
+++ R + +A MR + P + Y +I + G+++E+AL +MK
Sbjct: 147 ILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGS 206
Query: 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERA 420
G SLVT+ I++ F K G + A + +E K + ++Y ++I C ++R
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266
Query: 421 EALVRDMEEEGIDAPIDI-YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLIN 479
+AL ++ E G D+P I Y+ ++ G+ +G ++ +FE + E G P++ +Y LI+
Sbjct: 267 KALFDEVLERG-DSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLID 325
Query: 480 LYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP 539
+GK +AL++ +M + N TY+++IN K A+ + E + + +P
Sbjct: 326 GLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRP 385
Query: 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR--PTSRTFMPIIHGFARAGEMKRALE 597
D + YN ++ C G++D A ++ M K+ P ++ +IHG + + +AL+
Sbjct: 386 DNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALD 445
Query: 598 IFDMM-RRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY 656
I+D++ + G V T N L+ ++ + KA+E+ +++ + I N TYT ++ G+
Sbjct: 446 IYDLLVEKLGAGDRVTT-NILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504
Query: 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT 716
G A K+R L+ VF Y LL + CK G + A + +EM +
Sbjct: 505 CKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDV 564
Query: 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759
+NI+IDG + GD+ A L+ M + G+ PD+ TY+ IN
Sbjct: 565 VSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLIN 607
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 116/498 (23%), Positives = 244/498 (48%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKK----PSRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + + V+S E++++ + +++N + RR + A M
Sbjct: 87 EFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKM 146
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP++ ++L++ Y G+ + +A++ V +M E G +T++ ++ G A
Sbjct: 147 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + +R N + YG ++ C+ + + A L+ ME I+A + I++ +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D + + L +F+ ++ G P++++Y LI+ G+ S A ++ M I
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T++ LI+ F+K + +++D+++ + PD+ YN+++ FC +D+A
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF ++ ++ E+F M G + T+ LI GL
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ A ++ +M G+ P+ TY+ ++ G + G KA E F ++ ++LD++
Sbjct: 447 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
Y +++ CK+G++ + +S + + N YN +I G + + EA L+++M
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566
Query: 743 KQEGVQPDVHTYTSFINA 760
K++G P+ TY + I A
Sbjct: 567 KEDGPLPNSGTYNTLIRA 584
|
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 119/491 (24%), Positives = 240/491 (48%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKK----PSRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + + V+S E++++ + + +++N + RR + A M
Sbjct: 87 EFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKM 146
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP++ ++L++ Y G+ + +A++ V +M E G +T++ ++ G A
Sbjct: 147 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + +R N + YG ++ C+ +++ A L+ ME I+A + IY +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTV 266
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D +E+ L +F ++ G P++I+Y LI+ + S A + M I
Sbjct: 267 IDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKI 326
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T++ LI+ F+K +++++++ + PD+ Y+++I FC +D A H
Sbjct: 327 NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 386
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I+GF +A + +E+F M + G + T+ LI G
Sbjct: 387 MFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFF 446
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ R + A + +M G+ PN TY T++ G G KA F L+ +E ++
Sbjct: 447 QARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 506
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
TY +++ CK+G+++ + +S + + + +YN +I G+ R+G EA L ++M
Sbjct: 507 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKM 566
Query: 743 KQEGVQPDVHT 753
+++G PD T
Sbjct: 567 REDGPLPDSGT 577
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 113/462 (24%), Positives = 224/462 (48%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358
+ +++N + RR + A M G EP + +L++ + G + +A+S V +M
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178
Query: 359 EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME 418
E G + T++ ++ G + A A + + + + YG ++ C+ +++
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238
Query: 419 RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478
A +L++ ME+ I+ + IY+ ++D N L +F + G P++++Y LI
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298
Query: 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538
G+ S A + M I N+ T+S LI+ F+K +++++++ +
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358
Query: 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI 598
PD+ Y+++I FC +D A H+ + M + P T+ +I GF +A + +E+
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418
Query: 599 FDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658
F M + G + T+ LI G + R+ + A + +M G+ P+ TY+ ++ G +
Sbjct: 419 FREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCN 478
Query: 659 LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFV 718
G A F L+ +E D++TY +++ CK+G+++ + +S + + N
Sbjct: 479 NGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVT 538
Query: 719 YNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINA 760
Y ++ G+ R+G EA L ++MK+EG PD TY + I A
Sbjct: 539 YTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580
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| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 123/469 (26%), Positives = 229/469 (48%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
+PS+ +G + + D+ + + F M+ I P++ +Y LI G+ M +A
Sbjct: 176 RPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQ 235
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412
+M + SL+TY+ ++ G+ K GN E + E K H + I + ++
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Query: 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSII 472
+ +E AE ++++M++ G + ++ DGY+ E L V+E + G +
Sbjct: 296 KAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAY 355
Query: 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532
+ L+N K GK+ KA E+ + G+ N Y+ +I+G+ + D E +
Sbjct: 356 TCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAM 415
Query: 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM 592
+ G+KPD + YN +IR FC +G M+ A V +M+ + P+ T+ +I G+ R E
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475
Query: 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652
+ +I M +G +P V ++ LI L + ++ +A + +M G+SP Y +
Sbjct: 476 DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNML 535
Query: 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712
+ G S G AF + ++ +G+EL++ TY L+ +G++ A + E+S + +
Sbjct: 536 IDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGL 595
Query: 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
+ F YN LI G+ G+V L ++MK+ G++P + TY I+ C
Sbjct: 596 KPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLC 644
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WMY5 | PP365_ARATH | No assigned EC number | 0.6840 | 0.9589 | 0.7846 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00013814001 | SubName- Full=Chromosome undetermined scaffold_100, whole genome shotgun sequence; (929 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 779 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| smart00360 | 73 | smart00360, RRM, RNA recognition motif | 3e-14 | |
| cd00590 | 72 | cd00590, RRM_SF, RNA recognition motif (RRM) super | 6e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam00076 | 70 | pfam00076, RRM_1, RNA recognition motif | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| cd12240 | 78 | cd12240, RRM_NCBP2, RNA recognition motif found in | 4e-09 | |
| pfam14259 | 69 | pfam14259, RRM_6, RNA recognition motif (a | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| cd12384 | 76 | cd12384, RRM_RBM24_RBM38_like, RNA recognition mot | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| cd12332 | 71 | cd12332, RRM1_p54nrb_like, RNA recognition motif 1 | 1e-07 | |
| cd12229 | 81 | cd12229, RRM_G3BP, RNA recognition motif (RRM) in | 2e-07 | |
| cd12413 | 79 | cd12413, RRM1_RBM28_like, RNA recognition motif 1 | 3e-07 | |
| cd12347 | 73 | cd12347, RRM_PPIE, RNA recognition motif in cyclop | 3e-07 | |
| cd12298 | 78 | cd12298, RRM3_Prp24, RNA recognition motif 3 in fu | 3e-07 | |
| cd12336 | 75 | cd12336, RRM_RBM7_like, RNA recognition motif in R | 4e-07 | |
| cd12449 | 80 | cd12449, RRM_CIRBP_RBM3, RNA recognition motif in | 4e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-07 | |
| cd12415 | 82 | cd12415, RRM3_RBM28_like, RNA recognition motif 3 | 5e-07 | |
| COG0724 | 306 | COG0724, COG0724, RNA-binding proteins (RRM domain | 1e-06 | |
| cd12450 | 77 | cd12450, RRM1_NUCLs, RNA recognition motif 1 found | 1e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-06 | |
| cd12399 | 78 | cd12399, RRM_HP0827_like, RNA recognition motif in | 2e-06 | |
| cd12387 | 72 | cd12387, RRM3_hnRNPM_like, RNA recognition motif 3 | 2e-06 | |
| cd12382 | 80 | cd12382, RRM_RBMX_like, RNA recognition motif in h | 2e-06 | |
| cd12231 | 77 | cd12231, RRM2_U2AF65, RNA recognition motif 2 foun | 2e-06 | |
| cd12242 | 73 | cd12242, RRM_SLIRP, RNA recognition motif found in | 2e-06 | |
| cd12380 | 80 | cd12380, RRM3_I_PABPs, RNA recognition motif 3 fou | 3e-06 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 3e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 4e-06 | |
| cd12373 | 73 | cd12373, RRM_SRSF3_like, RNA recognition motif in | 4e-06 | |
| cd12395 | 73 | cd12395, RRM2_RBM34, RNA recognition motif 2 in RN | 4e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| cd12674 | 79 | cd12674, RRM1_Nop4p, RNA recognition motif 1 in ye | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| cd12392 | 81 | cd12392, RRM2_SART3, RNA recognition motif 2 in sq | 6e-06 | |
| cd12614 | 74 | cd12614, RRM1_PUB1, RNA recognition motif 1 in yea | 6e-06 | |
| cd12398 | 75 | cd12398, RRM_CSTF2_RNA15_like, RNA recognition mot | 1e-05 | |
| cd12338 | 72 | cd12338, RRM1_SRSF1_like, RNA recognition motif 1 | 1e-05 | |
| cd12365 | 73 | cd12365, RRM_RNPS1, RNA recognition motif in RNA-b | 1e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-05 | |
| cd12579 | 80 | cd12579, RRM2_hnRNPA0, RNA recognition motif 2 in | 2e-05 | |
| cd12343 | 66 | cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| cd12330 | 75 | cd12330, RRM2_Hrp1p, RNA recognition motif 2 in ye | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam05308 | 248 | pfam05308, Mito_fiss_reg, Mitochondrial fission re | 4e-05 | |
| cd12316 | 74 | cd12316, RRM3_RBM19_RRM2_MRD1, RNA recognition mot | 4e-05 | |
| cd12567 | 79 | cd12567, RRM3_RBM19, RNA recognition motif 3 in RN | 6e-05 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 6e-05 | |
| cd12337 | 70 | cd12337, RRM1_SRSF4_like, RNA recognition motif 1 | 6e-05 | |
| cd12411 | 89 | cd12411, RRM_ist3_like, RNA recognition motif in i | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| cd12454 | 80 | cd12454, RRM2_RIM4_like, RNA recognition motif 2 i | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| cd12578 | 78 | cd12578, RRM1_hnRNPA_like, RNA recognition motif 1 | 8e-05 | |
| cd12341 | 68 | cd12341, RRM_hnRNPC_like, RNA recognition motif in | 8e-05 | |
| cd12377 | 78 | cd12377, RRM3_Hu, RNA recognition motif 3 in the H | 8e-05 | |
| cd12571 | 79 | cd12571, RRM6_RBM19, RNA recognition motif 6 in RN | 8e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 9e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| cd12236 | 91 | cd12236, RRM_snRNP70, RNA recognition motif in U1 | 1e-04 | |
| cd12362 | 73 | cd12362, RRM3_CELF1-6, RNA recognition motif 3 in | 1e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| cd12394 | 91 | cd12394, RRM1_RBM34, RNA recognition motif 1 in RN | 2e-04 | |
| cd12327 | 80 | cd12327, RRM2_DAZAP1, RNA recognition motif 2 in D | 2e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 2e-04 | |
| cd12273 | 71 | cd12273, RRM1_NEFsp, RNA recognition motif 1 in ve | 2e-04 | |
| PLN03153 | 537 | PLN03153, PLN03153, hypothetical protein; Provisio | 2e-04 | |
| pfam00859 | 295 | pfam00859, CTF_NFI, CTF/NF-I family transcription | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-04 | |
| pfam13254 | 414 | pfam13254, DUF4045, Domain of unknown function (DU | 3e-04 | |
| cd12570 | 76 | cd12570, RRM5_MRD1, RNA recognition motif 5 in yea | 3e-04 | |
| cd12412 | 80 | cd12412, RRM_DAZL_BOULE, RNA recognition motif in | 3e-04 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 3e-04 | |
| cd12323 | 74 | cd12323, RRM2_MSI, RNA recognition motif 2 in RNA- | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| cd12318 | 82 | cd12318, RRM5_RBM19_like, RNA recognition motif 5 | 4e-04 | |
| PHA03419 | 200 | PHA03419, PHA03419, E4 protein; Provisional | 4e-04 | |
| cd12352 | 72 | cd12352, RRM1_TIA1_like, RNA recognition motif 1 i | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| cd12446 | 84 | cd12446, RRM_RBM25, RNA recognition motif in eukar | 5e-04 | |
| cd12334 | 74 | cd12334, RRM1_SF3B4, RNA recognition motif 1 in sp | 5e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| cd12284 | 73 | cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 | 6e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-04 | |
| cd12370 | 76 | cd12370, RRM1_PUF60, RNA recognition motif 1 in (U | 7e-04 | |
| cd12328 | 73 | cd12328, RRM2_hnRNPA_like, RNA recognition motif 2 | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| cd12342 | 71 | cd12342, RRM_Nab3p, RNA recognition motif in yeast | 8e-04 | |
| pfam06409 | 350 | pfam06409, NPIP, Nuclear pore complex interacting | 8e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.001 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.001 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 0.001 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 0.001 | |
| PTZ00449 | 943 | PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti | 0.001 | |
| cd12361 | 77 | cd12361, RRM1_2_CELF1-6_like, RNA recognition moti | 0.001 | |
| cd12322 | 71 | cd12322, RRM2_TDP43, RNA recognition motif 2 in TA | 0.001 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.001 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 0.001 | |
| pfam13893 | 56 | pfam13893, RRM_5, RNA recognition motif | 0.001 | |
| cd12463 | 80 | cd12463, RRM_G3BP1, RNA recognition motif found in | 0.001 | |
| pfam02711 | 95 | pfam02711, Pap_E4, E4 protein | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| PTZ00449 | 943 | PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti | 0.002 | |
| cd12593 | 75 | cd12593, RRM_RBM11, RNA recognition motif in verte | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.002 | |
| cd12656 | 86 | cd12656, RRM3_HuD, RNA recognition motif 3 in vert | 0.002 | |
| cd12391 | 72 | cd12391, RRM1_SART3, RNA recognition motif 1 in sq | 0.002 | |
| cd12223 | 84 | cd12223, RRM_SR140, RNA recognition motif (RRM) in | 0.002 | |
| cd12354 | 73 | cd12354, RRM3_TIA1_like, RNA recognition motif 2 i | 0.002 | |
| TIGR02031 | 589 | TIGR02031, BchD-ChlD, magnesium chelatase ATPase s | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| cd12267 | 77 | cd12267, RRM_YRA1_MLO3, RNA recognition motif in y | 0.003 | |
| cd12671 | 75 | cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif i | 0.003 | |
| pfam04554 | 57 | pfam04554, Extensin_2, Extensin-like region | 0.003 | |
| cd12653 | 84 | cd12653, RRM3_HuR, RNA recognition motif 3 in vert | 0.003 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 0.003 | |
| pfam04621 | 336 | pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain t | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| pfam12287 | 319 | pfam12287, Caprin-1_C, Cytoplasmic activation/prol | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 4e-38
Identities = 97/440 (22%), Positives = 204/440 (46%), Gaps = 42/440 (9%)
Query: 266 HRREFRKAVETQPENWQAVVSAF---ERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322
+ +F KA + Q +AV AF + I+ P+ F ++++ A D+ A + +
Sbjct: 408 YHAKFFKACKKQ----RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLV 463
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
+ G++ +YT LI A ++ +M G+E ++ T+ ++ G A+ G
Sbjct: 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + + ++ + +++ +I A Q+ ++RA ++ +M+ E PID
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET--HPID----- 576
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
P I+ G L+ G+V +A EV +++ I
Sbjct: 577 --------------------------PDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
K + Y++ +N + DW ++++D+ + G+KPD V ++ ++ G++D+A
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
I+++ +K+ + + ++ ++ + A K+ALE+++ ++ PTV T NALI L
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
E Q+ KA+E+L EM G+ PN TY+ ++ D + ++ + +G++ ++
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790
Query: 683 TYEALLKACCKSGRMQSALA 702
+ C + R + A A
Sbjct: 791 MCRCITGLCLR--RFEKACA 808
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 8e-31
Identities = 82/342 (23%), Positives = 146/342 (42%), Gaps = 37/342 (10%)
Query: 458 VFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFL 517
V ++E G Y LI+ K GKV EV M ++G++ N+ T+ LI+G
Sbjct: 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518
Query: 518 KLKDWANVFA---------------VFE----------------DVMRD------GLKPD 540
+ A F VF DV+ + + PD
Sbjct: 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578
Query: 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFD 600
+ +++A G +DRA + + + + + T + ++ ++ G+ AL I+D
Sbjct: 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 601 MMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG 660
M++ G P F+AL+ ++KA EIL + GI +Y+++M ++
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 661 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYN 720
+ KA E + +++ L V T AL+ A C+ ++ AL V EM + NT Y+
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758
Query: 721 ILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACK 762
IL+ R+ D DL+ Q K++G++P++ C
Sbjct: 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 71/295 (24%), Positives = 133/295 (45%), Gaps = 13/295 (4%)
Query: 485 GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLY 544
V +A +K++++ + T++ML++ +D V V GLK D LY
Sbjct: 420 RAVKEAFRFAKLIRNP----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLY 475
Query: 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604
+I G +D + EM TF +I G ARAG++ +A + +MR
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG--ISPNEHTYTTIMHGYASLGDT 662
P FNALI + +++A ++L EM I P+ T +M A+ G
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNIL 722
+A E + + ++ Y + +C + G AL++ +M + + + ++ L
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 723 IDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777
+D GD+ +A +++Q +++G++ +Y+S + AC SN +N W +A
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC----SNAKN---WKKA 703
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 4e-17
Identities = 78/343 (22%), Positives = 140/343 (40%), Gaps = 67/343 (19%)
Query: 485 GKVSKALEVSKVMKSSG-IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543
G+ +ALE+ +++++ TY L+ + LK V AV+ V G +PD +
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 544 YNNIIRAF--CGM-----------------------------GNMDRAIHIVKEMQKERH 572
N ++ CGM GN A + +EM ++
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 573 RPTSRTFMPIIH-----GFARAGEMKR--------------ALEIFDMMRRSG------- 606
RTF+ ++ G ARAG+ + + DM + G
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 607 ---CIP--TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD 661
+P T +N+++ G E+A+ + EM +G+S ++ T++ ++ ++ L
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721
A + L G LD+ AL+ K GRM+ A V M +N +N
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396
Query: 722 LIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764
LI G+ G +A ++ ++M EGV P+ T+ + ++AC+ S
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-14
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 609 PTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYA 657
P V T+N LI G +K ++E+A+++ +EM GI PN +TY+ ++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 2e-14
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
+ YN LIDG+ ++G V EA L +MK+ G++P+V+TY+ I+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|214636 smart00360, RRM, RNA recognition motif | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-14
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FVGNLP + + E F +FG +++V L++ K+ GF FV ++ +E+ A K
Sbjct: 1 TLFVGNLPPDTTEEELRELFSKFGKVESVRLVRDKET-GKSKGFAFVEFE---SEEDAEK 56
Query: 213 AVE-FDGVEFHGRVLTV 228
A+E +G E GR L V
Sbjct: 57 ALEALNGKELDGRPLKV 73
|
Length = 73 |
| >gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-14
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNLP + + E F +FG I++V +++ + K+ GF FV ++ P A KA
Sbjct: 1 LFVGNLPPDTTEEDLRELFSKFGEIESVRIVRDKDG--KSKGFAFVEFESPE---DAEKA 55
Query: 214 VE-FDGVEFHGRVLTVK 229
+E +G E GR L V
Sbjct: 56 LEALNGKELDGRKLKVS 72
|
RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-13
Identities = 102/501 (20%), Positives = 184/501 (36%), Gaps = 100/501 (19%)
Query: 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361
++ Y + GD+ AR F+ M R + +I Y + E L M+E
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCIS----WNAMISGYFENGECLEGLELFFTMRELS 283
Query: 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421
++ L+T + ++ +G+ + ++ + ++I + AE
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 422 ALVRDMEEEGI----------------DAPIDIYHMMM------DGYTIIGNEEKC---- 455
+ ME + D ++ Y +M D TI C
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403
Query: 456 -LIVFERLKECGFSPSIISY----GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYS 510
L V +L E +ISY LI +Y+K + KALEV + + ++ +++
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWT 459
Query: 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570
+I G +L + +F M LKP+ V + A +G + KE
Sbjct: 460 SIIAGL-RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCG--------KE 510
Query: 571 RHRPTSRT------FMP--IIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
H RT F+P ++ + R G M A F+ + V ++N L+ G V
Sbjct: 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD-----VVSWNILLTGYV 565
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ A+E+ + M +G++P+E T+
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDEVTFI-------------------------------- 593
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQ-KIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741
+LL AC +SG + L M + I N Y ++D R G + EA + + +
Sbjct: 594 ---SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650
Query: 742 MKQEGVQPDVHTYTSFINACK 762
M + PD + + +NAC+
Sbjct: 651 MP---ITPDPAVWGALLNACR 668
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 7e-13
Identities = 109/504 (21%), Positives = 194/504 (38%), Gaps = 91/504 (18%)
Query: 310 GDMHRARQTFENMRARG-IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT 368
G A + FE + A Y L+ A + + + ++ G E
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428
+ ++ K G A F+E ER N +G II N A AL R+M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 429 EEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIIS---YGC-LINLYTKI 484
E+G DA + +M+ +G+ ++L C ++ C LI++Y+K
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGS----ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 485 GKVSKALEVSKVM-KSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543
G + A V M + + + N ++G+ + ++ ++ G+ D
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSIDQFT 327
Query: 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMP--------IIHGFARAGEMKRA 595
++ +IR F + + E K+ H RT P ++ +++ G M+ A
Sbjct: 328 FSIMIRIFSRLALL--------EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI--- 652
+FD M R I ++NALI G + KA+E+ + M G++PN T+ +
Sbjct: 380 RNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 653 ---------------------------MHGYAS----LGDTGKAFEYFTKLRNEGLELDV 681
MH YA LG G E + +R + V
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMH-YACMIELLGREGLLDEAYAMIRRAPFKPTV 494
Query: 682 FTYEALLKACCKSGRMQSALAVTKEMSAQKI----PRNTFVYNILIDGWARRGDVWEAAD 737
+ ALL AC R+ L + + ++A+K+ P Y +L++ + G EAA
Sbjct: 495 NMWAALLTAC----RIHKNLELGR-LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549
Query: 738 LMQQMKQEGVQPDVHTYTSFINAC 761
+++ +K++G+ S AC
Sbjct: 550 VVETLKRKGL--------SMHPAC 565
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 83/378 (21%), Positives = 155/378 (41%), Gaps = 85/378 (22%)
Query: 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361
+++ Y++ GD+ AR F+ M E T + +++ YA+ EEAL +M++ G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421
+ + T+SI++ F+++ E AK+ HA L + I A
Sbjct: 321 VSIDQFTFSIMIRIFSRLAL-------LEHAKQAHAGLIRTGFPLDIVAN---------T 364
Query: 422 ALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLY 481
ALV D Y+ G E VF+R+ ++IS+ LI Y
Sbjct: 365 ALV-------------------DLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGY 401
Query: 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV 541
G+ +KA+E +FE ++ +G+ P+
Sbjct: 402 GNHGRGTKAVE-----------------------------------MFERMIAEGVAPNH 426
Query: 542 VLYNNIIRAFCGMGNMDRAIHIVKEM-QKERHRPTSRTFMPIIHGFARAGEMKRALEIFD 600
V + ++ A G ++ I + M + R +P + + +I R G + A +
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YA 483
Query: 601 MMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASL 659
M+RR+ PTV+ + AL+ + +E ++ L G+ P + + Y +++ Y S
Sbjct: 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK--LYGMGPEKLNNYVVLLNLYNSS 541
Query: 660 GDTGKAFEYFTKLRNEGL 677
G +A + L+ +GL
Sbjct: 542 GRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-11
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 469 PSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518
P +++Y LI+ Y K GKV +AL++ MK GIK N+ TYS+LI+G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 644 PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693
P+ TY T++ GY G +A + F +++ G++ +V+TY L+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 574 PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621
P T+ +I G+ + G+++ AL++F+ M++ G P V+T++ LI GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-11
Identities = 83/406 (20%), Positives = 159/406 (39%), Gaps = 62/406 (15%)
Query: 363 EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE-RHATLNAIIYGNIIYAQCQTRNMERAE 421
E L +++++VGG+AK G +F+EA H L A + ++ C R
Sbjct: 149 ERDLFSWNVLVGGYAKAG-------YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201
Query: 422 ALVRDMEEE------GIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYG 475
L R E G + +D+ + ++ Y G+ +VF+R+ IS+
Sbjct: 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWN 257
Query: 476 CLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535
+I+ Y + G+ + LE+ M+ + ++ T + +I+ L D + V++
Sbjct: 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
Query: 536 GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595
G DV + N++I+ + +G+ A + M
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM---------------------------- 349
Query: 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655
E D + ++ A+I G + +KA+E M +SP+E T +++
Sbjct: 350 -ETKDAV----------SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN 715
A LGD + +GL V AL++ K + AL V + ++
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454
Query: 716 TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
+ +I G +EA +QM ++P+ T + ++AC
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499
|
Length = 857 |
| >gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-11
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNLP + + + F +FGPI+++ ++ + ++ GF FV ++ + A++A
Sbjct: 1 LFVGNLPPDTTEEDLKDLFSKFGPIESIRIV--RDETGRSKGFAFVEFEDEEDAEKALEA 58
Query: 214 VEFDGVEFHGRVLT 227
+ +G E GR L
Sbjct: 59 L--NGKELGGRELR 70
|
(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588
PDVV YN +I +C G ++ A+ + EM+K +P T+ +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 7e-10
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728
DV TY L+ CK G+++ AL + EM + I N + Y+ILIDG +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378
P + Y LI Y +EEAL +MK+ GI+ ++ TYSI++ G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|240686 cd12240, RRM_NCBP2, RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 4e-09
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMK 212
++VGNL + + + E F + G IK +I+ G + F K GF FV Y ++A+K
Sbjct: 1 LYVGNLSFYTTEEQIYELFSRCGDIKRIIM--GLDRFTKTPCGFCFVEYYTREDAENAVK 58
Query: 213 AVEFDGVEFHGRVLTVKLDDG 233
+ +G + R++ V D G
Sbjct: 59 YL--NGTKLDDRIIRVDWDAG 77
|
This subfamily corresponds to the RRM of CBP20, also termed nuclear cap-binding protein subunit 2 (NCBP2), or cell proliferation-inducing gene 55 protein, or NCBP-interacting protein 1 (NIP1). CBP20 is the small subunit of the nuclear cap binding complex (CBC), which is a conserved eukaryotic heterodimeric protein complex binding to 5'-capped polymerase II transcripts and plays a central role in the maturation of pre-mRNA and uracil-rich small nuclear RNA (U snRNA). CBP20 is most likely responsible for the binding of capped RNA. It contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and interacts with the second and third domains of CBP80, the large subunit of CBC. . Length = 78 |
| >gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-08
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++V NLP + + + EFF +G ++ V L++ N ++ GF FV + P ++A+K
Sbjct: 1 LYVRNLPPSVTEEDLREFFSPYGKVEGVRLVR---NKDRPRGFAFVEFASPEDAEAALKK 57
Query: 214 VEFDGVEFHGRVL 226
+G+ GR L
Sbjct: 58 --LNGLVLDGRTL 68
|
k.a. RRM, RBD, or RNP domain). Length = 69 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFC 552
TY+ LI+G+ K +F ++ + G+KP+V Y+ +I C
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|240830 cd12384, RRM_RBM24_RBM38_like, RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-08
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG LP + ++F QFG I+ ++I K+ G+GFV + SA +
Sbjct: 2 KIFVGGLPYHTTDDSLRKYFSQFGEIEEAVVITD-RQTGKSRGYGFVTFKDKE---SAER 57
Query: 213 AVEFDGVEFHGRVLTVKL 230
A + GR V L
Sbjct: 58 ACKDPNPIIDGRKANVNL 75
|
This subfamily corresponds to the RRM of RBM24 and RBM38 from vertebrate, SUPpressor family member SUP-12 from Caenorhabditis elegans and similar proteins. Both, RBM24 and RBM38, are preferentially expressed in cardiac and skeletal muscle tissues. They regulate myogenic differentiation by controlling the cell cycle in a p21-dependent or -independent manner. RBM24, also termed RNA-binding region-containing protein 6, interacts with the 3'-untranslated region (UTR) of myogenin mRNA and regulates its stability in C2C12 cells. RBM38, also termed CLL-associated antigen KW-5, or HSRNASEB, or RNA-binding region-containing protein 1(RNPC1), or ssDNA-binding protein SEB4, is a direct target of the p53 family. It is required for maintaining the stability of the basal and stress-induced p21 mRNA by binding to their 3'-UTRs. It also binds the AU-/U-rich elements in p63 3'-UTR and regulates p63 mRNA stability and activity. SUP-12 is a novel tissue-specific splicing factor that controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans. All family members contain a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 9e-08
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQ 568
GLKPDVV YN +I C G +D A+ ++ EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342
+++ Y ++G + A + F M+ RGI+P ++ Y+ LI
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYF 669
+ H N+ + L Q+E+A+++L+ M + +E Y + L + +A E
Sbjct: 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR----LCEWKRAVEEG 105
Query: 670 TKLRNEGLE----LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725
+++ + L L V A+L + G + A V +M R+ F +N+L+ G
Sbjct: 106 SRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGG 161
Query: 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761
+A+ G EA L +M GV+PDV+T+ + C
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|240778 cd12332, RRM1_p54nrb_like, RNA recognition motif 1 in the p54nrb/PSF/PSP1 family | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++FVGNLPN I + E F ++G + V + N EK GFGF+ D +A K
Sbjct: 3 RLFVGNLPNDITEEEFKELFSKYGEVSEV-----FLNKEK--GFGFIRLD---TRTNAEK 52
Query: 213 A-VEFDGVEFHGRVLTVK 229
A E DG+ GR L V+
Sbjct: 53 AKAELDGIMRKGRQLRVR 70
|
This subfamily corresponds to the RRM1 of the p54nrb/PSF/PSP1 family, including 54 kDa nuclear RNA- and DNA-binding protein (p54nrb or NonO or NMT55), polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF or POMp100), paraspeckle protein 1 (PSP1 or PSPC1), which are ubiquitously expressed and are conserved in vertebrates. p54nrb is a multi-functional protein involved in numerous nuclear processes including transcriptional regulation, splicing, DNA unwinding, nuclear retention of hyperedited double-stranded RNA, viral RNA processing, control of cell proliferation, and circadian rhythm maintenance. PSF is also a multi-functional protein that binds RNA, single-stranded DNA (ssDNA), double-stranded DNA (dsDNA) and many factors, and mediates diverse activities in the cell. PSP1 is a novel nucleolar factor that accumulates within a new nucleoplasmic compartment, termed paraspeckles, and diffusely distributes in the nucleoplasm. The cellular function of PSP1 remains unknown currently. This subfamily also includes some p54nrb/PSF/PSP1 homologs from invertebrate species, such as the Drosophila melanogaster gene no-ontransient A (nonA) encoding puff-specific protein Bj6 (also termed NONA) and Chironomus tentans hrp65 gene encoding protein Hrp65. D. melanogaster NONA is involved in eye development and behavior, and may play a role in circadian rhythm maintenance, similar to vertebrate p54nrb. C. tentans Hrp65 is a component of nuclear fibers associated with ribonucleoprotein particles in transit from the gene to the nuclear pore. All family members contain a DBHS domain (for Drosophila behavior, human splicing), which comprises two conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a charged protein-protein interaction module. PSF has an additional large N-terminal domain that differentiates it from other family members. . Length = 71 |
| >gnl|CDD|240675 cd12229, RRM_G3BP, RNA recognition motif (RRM) in ras GTPase-activating protein-binding protein G3BP1, G3BP2 and similar proteins | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAA 206
++FVGNLP+ I + + EFF++FG + V I KG N FGFV++D P A
Sbjct: 5 QLFVGNLPHDITEDELKEFFKEFGNVLEVRINSKGGGGRLPN--FGFVVFDDPEA 57
|
This subfamily corresponds to the RRM domain in the G3BP family of RNA-binding and SH3 domain-binding proteins. G3BP acts at the level of RNA metabolism in response to cell signaling, possibly as RNA transcript stabilizing factors or an RNase. Members include G3BP1, G3BP2 and similar proteins. These proteins associate directly with the SH3 domain of GTPase-activating protein (GAP), which functions as an inhibitor of Ras. They all contain an N-terminal nuclear transfer factor 2 (NTF2)-like domain, an acidic domain, a domain containing PXXP motif(s), an RNA recognition motif (RRM), and an Arg-Gly-rich region (RGG-rich region, or arginine methylation motif). Length = 81 |
| >gnl|CDD|240859 cd12413, RRM1_RBM28_like, RNA recognition motif 1 in RNA-binding protein 28 (RBM28) and similar proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-07
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV NLP + EFF + GPIK ++K + +K GFG+V + A E+ A +A
Sbjct: 2 LFVRNLPYDTTDEQLEEFFSEVGPIKRCFVVKDKGS-KKCRGFGYVTF---ALEEDAKRA 57
Query: 214 VE-FDGVEFHGRVLTVKL 230
+E +F GR + V+
Sbjct: 58 LEEKKKTKFGGRKIHVEF 75
|
This subfamily corresponds to the RRM1 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 79 |
| >gnl|CDD|240793 cd12347, RRM_PPIE, RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-07
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++VG L + + ++ F FG IK++ + Y +K+ GF FV ++ P +A+
Sbjct: 1 LYVGGLAEEVDEKVLHAAFIPFGDIKDIQIPLDYET-QKHRGFAFVEFEEPEDAAAAID- 58
Query: 214 VEFDGVEFHGRVLTV 228
+ E GR + V
Sbjct: 59 -NMNESELFGRTIRV 72
|
This subfamily corresponds to the RRM of Cyp33, also termed peptidyl-prolyl cis-trans isomerase E (PPIase E), or cyclophilin E, or rotamase E. Cyp33 is a nuclear RNA-binding cyclophilin with an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal PPIase domain. Cyp33 possesses RNA-binding activity and preferentially binds to polyribonucleotide polyA and polyU, but hardly to polyG and polyC. It binds specifically to mRNA, which can stimulate its PPIase activity. Moreover, Cyp33 interacts with the third plant homeodomain (PHD3) zinc finger cassette of the mixed lineage leukemia (MLL) proto-oncoprotein and a poly-A RNA sequence through its RRM domain. It further mediates downregulation of the expression of MLL target genes HOXC8, HOXA9, CDKN1B, and C-MYC, in a proline isomerase-dependent manner. Cyp33 also possesses a PPIase activity that catalyzes cis-trans isomerization of the peptide bond preceding a proline, which has been implicated in the stimulation of folding and conformational changes in folded and unfolded proteins. The PPIase activity can be inhibited by the immunosuppressive drug cyclosporin A. . Length = 73 |
| >gnl|CDD|240744 cd12298, RRM3_Prp24, RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-07
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-IKGYNNFEK-NVGFGFVIYDGPAAEKSA 210
+I+V NL + + + F +FG ++++ + K + N GF FV + + SA
Sbjct: 2 EIYVRNLDFKLDEDDLRGIFSKFGEVESIRIPKKQDEKQGRLNNGFAFVTFKDAS---SA 58
Query: 211 MKAVEFDGVEFHGRVLTVKL 230
A++ +G E GR ++V L
Sbjct: 59 ENALQLNGTELGGRKISVSL 78
|
This subfamily corresponds to the RRM3 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 78 |
| >gnl|CDD|240782 cd12336, RRM_RBM7_like, RNA recognition motif in RNA-binding protein 7 (RBM7) and similar proteins | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNL + + ++ E F Q GP++ V + K N K+ F FV + + A++
Sbjct: 4 LFVGNLDARVTEEILYELFLQAGPLEGVKIPKDPNGKPKS--FAFVTFKHEVSVPYAIQL 61
Query: 214 VEFDGVEFHGRVLTVK 229
+G+ GR L +K
Sbjct: 62 --LNGIRLFGRELRIK 75
|
This subfamily corresponds to the RRM of RBM7, RBM11 and their eukaryotic homologous. RBM7 is an ubiquitously expressed pre-mRNA splicing factor that enhances messenger RNA (mRNA) splicing in a cell-specific manner or in a certain developmental process, such as spermatogenesis. It interacts with splicing factors SAP145 (the spliceosomal splicing factor 3b subunit 2) and SRp20, and may play a more specific role in meiosis entry and progression. Together with additional testis-specific RNA-binding proteins, RBM7 may regulate the splicing of specific pre-mRNA species that are important in the meiotic cell cycle. RBM11 is a novel tissue-specific splicing regulator that is selectively expressed in brain, cerebellum and testis, and to a lower extent in kidney. It is localized in the nucleoplasm and enriched in SRSF2-containing splicing speckles. It may play a role in the modulation of alternative splicing during neuron and germ cell differentiation. Both, RBM7 and RBM11, contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a region lacking known homology at the C-terminus. The RRM is responsible for RNA binding, whereas the C-terminal region permits nuclear localization and homodimerization. . Length = 75 |
| >gnl|CDD|240895 cd12449, RRM_CIRBP_RBM3, RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-07
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
GK+F+G L + + + F ++G I V+++K +++ GFGFV ++ P K AM
Sbjct: 1 GKLFIGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET-QRSRGFGFVTFENPDDAKDAM 59
Query: 212 KAVEFDGVEFHGRVLTV 228
A+ +G GR + V
Sbjct: 60 MAM--NGKSVDGRQIRV 74
|
This subfamily corresponds to the RRM domain of two structurally related heterogenous nuclear ribonucleoproteins, CIRBP (also termed CIRP or A18 hnRNP) and RBM3 (also termed RNPL), both of which belong to a highly conserved cold shock proteins family. The cold shock proteins can be induced after exposure to a moderate cold-shock and other cellular stresses such as UV radiation and hypoxia. CIRBP and RBM3 may function in posttranscriptional regulation of gene expression by binding to different transcripts, thus allowing the cell to response rapidly to environmental signals. However, the kinetics and degree of cold induction are different between CIRBP and RBM3. Tissue distribution of their expression is different. CIRBP and RBM3 may be differentially regulated under physiological and stress conditions and may play distinct roles in cold responses of cells. CIRBP, also termed glycine-rich RNA-binding protein CIRP, is localized in the nucleus and mediates the cold-induced suppression of cell cycle progression. CIRBP also binds DNA and possibly serves as a chaperone that assists in the folding/unfolding, assembly/disassembly and transport of various proteins. RBM3 may enhance global protein synthesis and the formation of active polysomes while reducing the levels of ribonucleoprotein complexes containing microRNAs. RBM3 may also serve to prevent the loss of muscle mass by its ability to decrease cell death. Furthermore, RBM3 may be essential for cell proliferation and mitosis. Both, CIRBP and RBM3, contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), that is involved in RNA binding, and C-terminal glycine-rich domain (RGG motif) that probably enhances RNA-binding via protein-protein and/or protein-RNA interactions. Like CIRBP, RBM3 can also bind to both RNA and DNA via its RRM domain. . Length = 80 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 83/494 (16%), Positives = 178/494 (36%), Gaps = 105/494 (21%)
Query: 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361
++ Y G A + F M + +T +I Y ++AL M+++
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAVS----WTAMISGYEKNGLPDKALETYALMEQDN 384
Query: 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII--YAQCQTRNMER 419
+ +T + ++ A +G+ + E A+ + ++ +I Y++C+
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC----- 439
Query: 420 AEALVRDMEEEGIDAPIDIYHMMMD-----------GYTIIGNEEKCLIVFERLKECGFS 468
ID ++++H + + G + + LI F ++
Sbjct: 440 ------------IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLK 486
Query: 469 PSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAV 528
P+ ++ ++ +IG + E+ + +GI + + L++ +++ +
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546
Query: 529 FEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588
F + + DVV +N ++ + G A+ + M + P TF+ ++ +R
Sbjct: 547 F-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHT 648
+G + + LE F M + I+PN
Sbjct: 602 SGMVTQGLEYFHSME--------EKY--------------------------SITPNLKH 627
Query: 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708
Y ++ G +A+ + K+ + D + ALL AC R+ + + E++
Sbjct: 628 YACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC----RIHRHVEL-GELA 679
Query: 709 AQKI----PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764
AQ I P + Y +L + +A G E A + + M++ G+ D
Sbjct: 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD-------------- 725
Query: 765 KSNQRNGRSWSEAK 778
G SW E K
Sbjct: 726 -----PGCSWVEVK 734
|
Length = 857 |
| >gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-07
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP-AAEK--SA 210
+F+ NLP + + E F QFG +K ++K + G FV + +A+K A
Sbjct: 3 VFIRNLPFDATEEELKELFSQFGEVKYARIVK-DKLTGHSKGTAFVKFKTKESAQKCLEA 61
Query: 211 MKAVEFDGVEFHGRVLTVKL 230
E G+ GR L V L
Sbjct: 62 ADNAEDSGLSLDGRRLIVTL 81
|
This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82 |
| >gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (121), Expect = 1e-06
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 110 PPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVM 169
+++E + E SS + + + +FVGNLP + + +
Sbjct: 74 EENEREMEEQNDGERGYTKEFEEELFRSSESPKSRQKSKEENNTLFVGNLPYDVTEEDLR 133
Query: 170 EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
E F++FGP+K V + K+ GF FV ++ + + A++ E +G E GR L V+
Sbjct: 134 ELFKKFGPVKRVR-LVRDRETGKSRGFAFVEFESEESAEKAIE--ELNGKELEGRPLRVQ 190
Query: 230 LD 231
Sbjct: 191 KA 192
|
Length = 306 |
| >gnl|CDD|240896 cd12450, RRM1_NUCLs, RNA recognition motif 1 found in nucleolin-like proteins mainly from plants | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNL ++ + EFF++ G + +V + + + K GFG V + A E+ A KA
Sbjct: 2 LFVGNLSWSAEQDDLEEFFKECGEVVDVRIAQDDDGRSK--GFGHVEF---ATEEGAQKA 56
Query: 214 VEFDGVEFHGRVLTVKL 230
+E G E GR + V L
Sbjct: 57 LEKSGEELLGREIRVDL 73
|
This subfamily corresponds to the RRM1 of a group of plant nucleolin-like proteins, including nucleolin 1 (also termed protein nucleolin like 1) and nucleolin 2 (also termed protein nucleolin like 2, or protein parallel like 1). They play roles in the regulation of ribosome synthesis and in the growth and development of plants. Like yeast nucleolin, nucleolin-like proteins possess two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 77 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (119), Expect = 1e-06
Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 4/227 (1%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTL-HVYTNLIHAYAVGRDMEEALSCVRKM 357
L+ + G + A + E + P L NL EEAL + K
Sbjct: 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 358 KEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN--AIIYGNIIYAQCQTR 415
+ L + +G ++G+ E A +E+A E LN A +
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 416 NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYG 475
E A L+ + D + + Y +G E+ L +E+ E + +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALY 240
Query: 476 CLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDW 522
L L ++G+ +ALE + ++L+ L+
Sbjct: 241 NLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELL 287
|
Length = 291 |
| >gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF-EKNVGFGFVIYDGPAAEKSAM 211
++VGNLP + + + + F QFG + + +I + ++ GFGFV + +A+
Sbjct: 1 NLYVGNLPYNVTEEDLKDLFGQFGEVTSARVI--TDRETGRSRGFGFVEMETAEEANAAI 58
Query: 212 KAVEFDGVEFHGRVLTV 228
+ +G +F GR LTV
Sbjct: 59 EK--LNGTDFGGRTLTV 73
|
This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. . Length = 78 |
| >gnl|CDD|240833 cd12387, RRM3_hnRNPM_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein M (hnRNP M) and similar proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 154 IFVGNLP---NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
IFV NLP W + + FR+ G + + + K GFG V+++ P + A
Sbjct: 1 IFVRNLPFSVTWQD---LKDLFRECGNVLRADVKTDNDGRSK--GFGTVLFESP---EDA 52
Query: 211 MKAVE-FDGVEFHGRVLTVK 229
+A+E F+G + GR L V+
Sbjct: 53 QRAIEMFNGYDLEGRELEVR 72
|
This subfamily corresponds to the RRM3 of heterogeneous nuclear ribonucleoprotein M (hnRNP M), myelin expression factor 2 (MEF-2 or MyEF-2 or MST156) and similar proteins. hnRNP M is pre-mRNA binding protein that may play an important role in the pre-mRNA processing. It also preferentially binds to poly(G) and poly(U) RNA homopolymers. hnRNP M is able to interact with early spliceosomes, further influencing splicing patterns of specific pre-mRNAs. hnRNP M functions as the receptor of carcinoembryonic antigen (CEA) that contains the penta-peptide sequence PELPK signaling motif. In addition, hnRNP M and another splicing factor Nova-1 work together as dopamine D2 receptor (D2R) pre-mRNA-binding proteins. They regulate alternative splicing of D2R pre-mRNA in an antagonistic manner. hnRNP M contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an unusual hexapeptide-repeat region rich in methionine and arginine residues (MR repeat motif). MEF-2 is a sequence-specific single-stranded DNA (ssDNA) binding protein that binds specifically to ssDNA derived from the proximal (MB1) element of the myelin basic protein (MBP) promoter and represses transcription of the MBP gene. MEF-2 shows high sequence homology with hnRNP M. It also contains three RRMs, which may be responsible for its ssDNA binding activity. . Length = 72 |
| >gnl|CDD|240828 cd12382, RRM_RBMX_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKS 209
K+FV L + + F +FG ++ V+L+K + E GFGFV ++ +
Sbjct: 2 NKLFVSGLSTRTTEKELEALFSKFGRVEEVLLMK---DPETGESRGFGFVTFESVEDADA 58
Query: 210 AMKAVEFDGVEFHGRVLTV 228
A++ + +G E GRV+ V
Sbjct: 59 AIR--DLNGKELEGRVIKV 75
|
This subfamily corresponds to the RRM domain of hnRNP G, also termed glycoprotein p43 or RBMX, an RNA-binding motif protein located on the X chromosome. It is expressed ubiquitously and has been implicated in the splicing control of several pre-mRNAs. Moreover, hnRNP G may function as a regulator of transcription for SREBP-1c and GnRH1. Research has shown that hnRNP G may also act as a tumor-suppressor since it upregulates the Txnip gene and promotes the fidelity of DNA end-joining activity. In addition, hnRNP G appears to play a critical role in proper neural development of zebrafish and frog embryos. The family also includes several paralogs of hnRNP G, such as hRBMY and hnRNP G-T (also termed RNA-binding motif protein, X-linked-like-2). Both, hRBMY and hnRNP G-T, are exclusively expressed in testis and critical for male fertility. Like hnRNP G, hRBMY and hnRNP G-T interact with factors implicated in the regulation of pre-mRNA splicing, such as hTra2-beta1 and T-STAR. Although members in this family share a high conserved N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), they appear to recognize different RNA targets. For instance, hRBMY interacts specifically with a stem-loop structure in which the loop is formed by the sequence CA/UCAA. In contrast, hnRNP G associates with single stranded RNA sequences containing a CCA/C motif. In addition to the RRM, hnRNP G contains a nascent transcripts targeting domain (NTD) in the middle region and a novel auxiliary RNA-binding domain (RBD) in its C-terminal region. The C-terminal RBD exhibits distinct RNA binding specificity, and would play a critical role in the regulation of alternative splicing by hnRNP G. . Length = 80 |
| >gnl|CDD|240677 cd12231, RRM2_U2AF65, RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK-GYNNFEKNVGFGFVIYDGPAAEKSAM 211
KIF+G LPN++ + V E FG +K L+K K G+ F Y P+
Sbjct: 2 KIFIGGLPNYLSEDQVKELLESFGKLKAFNLVKDSATGLSK--GYAFCEYLDPSV---TD 56
Query: 212 KAVE-FDGVEFHGRVLTVK 229
+A+ +G++ + LTV+
Sbjct: 57 QAIAGLNGMQLGDKKLTVQ 75
|
This subfamily corresponds to the RRM2 of U2AF65 and dU2AF50. U2AF65, also termed U2AF2, is the large subunit of U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF), which has been implicated in the recruitment of U2 snRNP to pre-mRNAs and is a highly conserved heterodimer composed of large and small subunits. U2AF65 specifically recognizes the intron polypyrimidine tract upstream of the 3' splice site and promotes binding of U2 snRNP to the pre-mRNA branchpoint. U2AF65 also plays an important role in the nuclear export of mRNA. It facilitates the formation of a messenger ribonucleoprotein export complex, containing both the NXF1 receptor and the RNA substrate. Moreover, U2AF65 interacts directly and specifically with expanded CAG RNA, and serves as an adaptor to link expanded CAG RNA to NXF1 for RNA export. U2AF65 contains an N-terminal RS domain rich in arginine and serine, followed by a proline-rich segment and three C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The N-terminal RS domain stabilizes the interaction of U2 snRNP with the branch point (BP) by contacting the branch region, and further promotes base pair interactions between U2 snRNA and the BP. The proline-rich segment mediates protein-protein interactions with the RRM domain of the small U2AF subunit (U2AF35 or U2AF1). The RRM1 and RRM2 are sufficient for specific RNA binding, while RRM3 is responsible for protein-protein interactions. The family also includes Splicing factor U2AF 50 kDa subunit (dU2AF50), the Drosophila ortholog of U2AF65. dU2AF50 functions as an essential pre-mRNA splicing factor in flies. It associates with intronless mRNAs and plays a significant and unexpected role in the nuclear export of a large number of intronless mRNAs. Length = 77 |
| >gnl|CDD|240688 cd12242, RRM_SLIRP, RNA recognition motif found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG----FGFVIYDGPAAEK 208
K+FVGNLP + + E+F QFG +K+ + F+K G +GFV + +
Sbjct: 1 KLFVGNLPWTVGSKELKEYFSQFGKVKSCNVP-----FDKETGLSKGYGFVSFSSRDGLE 55
Query: 209 SAMKAVEFDGVEFHGRVLTVK 229
+A++ G L V+
Sbjct: 56 NALQ---KQKHILEGNKLQVQ 73
|
This subfamily corresponds to the RRM of SLIRP, a widely expressed small steroid receptor RNA activator (SRA) binding protein, which binds to STR7, a functional substructure of SRA. SLIRP is localized predominantly to the mitochondria and plays a key role in modulating several nuclear receptor (NR) pathways. It functions as a co-repressor to repress SRA-mediated nuclear receptor coactivation. It modulates SHARP- and SKIP-mediated co-regulation of NR activity. SLIRP contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is required for SLIRP's corepression activities. . Length = 73 |
| >gnl|CDD|240826 cd12380, RRM3_I_PABPs, RNA recognition motif 3 found in type I polyadenylate-binding proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-06
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++V NL + + E F ++G I + ++K K+ GFGFV ++ A A KA
Sbjct: 4 VYVKNLGEDMDDEKLKELFGKYGKITSAKVMKDDEG--KSKGFGFVNFENHEA---AQKA 58
Query: 214 VE-FDGVEFHGRVLTVKLDDGRRLK 237
VE +G E +G+ L V GR K
Sbjct: 59 VEELNGKEVNGKKLYV----GRAQK 79
|
This subfamily corresponds to the RRM3 of type I poly(A)-binding proteins (PABPs), highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. The family represents type I polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 1 (PABP-1 or PABPC1), polyadenylate-binding protein 3 (PABP-3 or PABPC3), polyadenylate-binding protein 4 (PABP-4 or APP-1 or iPABP), polyadenylate-binding protein 5 (PABP-5 or PABPC5), polyadenylate-binding protein 1-like (PABP-1-like or PABPC1L), polyadenylate-binding protein 1-like 2 (PABPC1L2 or RBM32), polyadenylate-binding protein 4-like (PABP-4-like or PABPC4L), yeast polyadenylate-binding protein, cytoplasmic and nuclear (PABP or ACBP-67), and similar proteins. PABP-1 is an ubiquitously expressed multifunctional protein that may play a role in 3' end formation of mRNA, translation initiation, mRNA stabilization, protection of poly(A) from nuclease activity, mRNA deadenylation, inhibition of mRNA decapping, and mRNP maturation. Although PABP-1 is thought to be a cytoplasmic protein, it is also found in the nucleus. PABP-1 may be involved in nucleocytoplasmic trafficking and utilization of mRNP particles. PABP-1 contains four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a less well conserved linker region, and a proline-rich C-terminal conserved domain (CTD). PABP-3 is a testis-specific poly(A)-binding protein specifically expressed in round spermatids. It is mainly found in mammalian and may play an important role in the testis-specific regulation of mRNA homeostasis. PABP-3 shows significant sequence similarity to PABP-1. However, it binds to poly(A) with a lower affinity than PABP-1. PABP-1 possesses an A-rich sequence in its 5'-UTR and allows binding of PABP and blockage of translation of its own mRNA. In contrast, PABP-3 lacks the A-rich sequence in its 5'-UTR. PABP-4 is an inducible poly(A)-binding protein (iPABP) that is primarily localized to the cytoplasm. It shows significant sequence similarity to PABP-1 as well. The RNA binding properties of PABP-1 and PABP-4 appear to be identical. PABP-5 is encoded by PABPC5 gene within the X-specific subinterval, and expressed in fetal brain and in a range of adult tissues in mammalian, such as ovary and testis. It may play an important role in germ cell development. Moreover, unlike other PABPs, PABP-5 contains only four RRMs, but lacks both the linker region and the CTD. PABP-1-like and PABP-1-like 2 are the orthologs of PABP-1. PABP-4-like is the ortholog of PABP-5. Their cellular functions remain unclear. The family also includes the yeast PABP, a conserved poly(A) binding protein containing poly(A) tails that can be attached to the 3'-ends of mRNAs. The yeast PABP and its homologs may play important roles in the initiation of translation and in mRNA decay. Like vertebrate PABP-1, the yeast PABP contains four RRMs, a linker region, and a proline-rich CTD as well. The first two RRMs are mainly responsible for specific binding to poly(A). The proline-rich region may be involved in protein-protein interactions. . Length = 80 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 110 PPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVM 169
P P + Q +D + E S+++ S + +I++GNLP ++ + +
Sbjct: 262 PVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDS--------KDRIYIGNLPLYLGEDQIK 313
Query: 170 EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
E FG +K LIK + G+ F Y P+ A+ A+ +G + L V+
Sbjct: 314 ELLESFGDLKAFNLIKDIAT-GLSKGYAFCEYKDPSVTDVAIAAL--NGKDTGDNKLHVQ 370
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-06
Identities = 34/147 (23%), Positives = 39/147 (26%), Gaps = 17/147 (11%)
Query: 8 SAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNL-----------HRPP 56
A A P P S PPPP PP L RPP
Sbjct: 2808 PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867
Query: 57 KSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQL 116
S + P P L S + S + + PP P PPPP Q
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARPA---VSRSTESFALP---PDQPERPPQPQAPPPPQPQP 2921
Query: 117 QEPQSQGNDEIPDAENRSPSSSLATSQ 143
Q P P R T+
Sbjct: 2922 QPPPPPQPQPPPPPPPRPQPPLAPTTD 2948
|
Length = 3151 |
| >gnl|CDD|240819 cd12373, RRM_SRSF3_like, RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-06
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K++VGNL K + + F ++GP+++V + + GF FV ++ P A
Sbjct: 1 KVYVGNLGPRATKRELEDEFEKYGPLRSVWVAR------NPPGFAFVEFEDPR---DAED 51
Query: 213 AV-EFDGVEFHGRVLTVKL 230
AV DG G + V+L
Sbjct: 52 AVRALDGRRICGNRVRVEL 70
|
This subfamily corresponds to the RRM of two serine/arginine (SR) proteins, serine/arginine-rich splicing factor 3 (SRSF3) and serine/arginine-rich splicing factor 7 (SRSF7). SRSF3, also termed pre-mRNA-splicing factor SRp20, modulates alternative splicing by interacting with RNA cis-elements in a concentration- and cell differentiation-dependent manner. It is also involved in termination of transcription, alternative RNA polyadenylation, RNA export, and protein translation. SRSF3 is critical for cell proliferation, and tumor induction and maintenance. It can shuttle between the nucleus and cytoplasm. SRSF7, also termed splicing factor 9G8, plays a crucial role in both constitutive splicing and alternative splicing of many pre-mRNAs. Its localization and functions are tightly regulated by phosphorylation. SRSF7 is predominantly present in the nuclear and can shuttle between nucleus and cytoplasm. It cooperates with the export protein, Tap/NXF1, helps mRNA export to the cytoplasm, and enhances the expression of unspliced mRNA. Moreover, SRSF7 inhibits tau E10 inclusion through directly interacting with the proximal downstream intron of E10, a clustering region for frontotemporal dementia with Parkinsonism (FTDP) mutations. Both SRSF3 and SRSF7 contain a single N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RS domain rich in serine-arginine dipeptides. The RRM domain is involved in RNA binding, and the RS domain has been implicated in protein shuttling and protein-protein interactions. . Length = 73 |
| >gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-06
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK-GYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FVGNLP I++ + + F G ++ V +++ K GFG+V++ S
Sbjct: 2 VFVGNLPFDIEEEELRKHFEDCGDVEAVRIVRDRKTGIGK--GFGYVLFKTKD---SVAL 56
Query: 213 AVEFDGVEFHGRVLTVK 229
A++ +G++ GR + VK
Sbjct: 57 ALKLNGIKLKGRKIRVK 73
|
This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 716 TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749
YN L+ A+ GD A ++++MK G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 577 RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611
T+ +I G +AG ++ ALE+F M+ G P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|241118 cd12674, RRM1_Nop4p, RNA recognition motif 1 in yeast nucleolar protein 4 (Nop4p) and similar proteins | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-06
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV NL + + + +FF PIK+ +++ ++ G+GFV + + A+
Sbjct: 2 LFVRNLAFSVTQEDLTDFFSDVAPIKHAVVVTDPET-GESRGYGFVTFAMLEDAQEALA- 59
Query: 214 VEFDGVEFHGRVLTVKLD 231
+ + HGR+L +LD
Sbjct: 60 -KLKNKKLHGRIL--RLD 74
|
This subgroup corresponds to the RRM1 of Nop4p (also known as Nop77p), encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 79 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 6e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743
+ + YN LIDG R G V EA +L+ +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|240838 cd12392, RRM2_SART3, RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+FV LP + K + + F++ G +K+V L+ + K G +V Y+ E SA +
Sbjct: 4 KLFVSGLPFSVTKEELEKLFKKHGVVKSVRLVTNRSGKPK--GLAYVEYEN---ESSASQ 58
Query: 213 AV-EFDGVEFHGRVLTVKL 230
AV + DG E + ++V +
Sbjct: 59 AVLKMDGTEIKEKTISVAI 77
|
This subfamily corresponds to the RRM2 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), is an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 81 |
| >gnl|CDD|241058 cd12614, RRM1_PUB1, RNA recognition motif 1 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-06
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 20/93 (21%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++VGNL + + ++ + F+ GP++NV +I NN K V +GFV Y + A++
Sbjct: 1 LYVGNLDPRVTEDILKQIFQVGGPVQNVKIIPDKNN--KGVNYGFVEYHQSHDAEIALQT 58
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARW 246
+ +GR+++N E+R W
Sbjct: 59 L-----------------NGRQIENN-EIRVNW 73
|
This subgroup corresponds to the RRM1 of yeast protein PUB1, also termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein. PUB1 has been identified as both, a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP), which may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. It is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA); however, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 74 |
| >gnl|CDD|240844 cd12398, RRM_CSTF2_RNA15_like, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPAAEKS 209
+FVGN+P + ++E F + GP+ + L+ +++ G+GF ++ S
Sbjct: 1 VFVGNIPYDATEEQLIEIFSEVGPVVSFRLV-----TDRDTGKPKGYGFCEFEDIETAAS 55
Query: 210 AMKAVEFDGVEFHGRVLTV 228
A++ +G EF+GR L V
Sbjct: 56 AIR--NLNGYEFNGRALRV 72
|
This subfamily corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. The family also includes yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins. RNA15 is a core subunit of cleavage factor IA (CFIA), an essential transcriptional 3'-end processing factor from Saccharomyces cerevisiae. RNA recognition by CFIA is mediated by an N-terminal RRM, which is contained in the RNA15 subunit of the complex. The RRM of RNA15 has a strong preference for GU-rich RNAs, mediated by a binding pocket that is entirely conserved in both yeast and vertebrate RNA15 orthologs. Length = 75 |
| >gnl|CDD|240784 cd12338, RRM1_SRSF1_like, RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+I+VGNLP I++ + + F ++GPIK + L N + F FV ++ P + A++
Sbjct: 1 RIYVGNLPGDIRERDIEDLFYKYGPIKAIDL----KNRRRGPPFAFVEFEDPRDAEDAVR 56
Query: 213 AVEFDGVEFHGRVLTVKL 230
DG +F G L V+
Sbjct: 57 GR--DGYDFDGYRLRVEF 72
|
This subgroup corresponds to the RRM1 in three serine/arginine (SR) proteins: serine/arginine-rich splicing factor 1 (SRSF1 or ASF-1), serine/arginine-rich splicing factor 9 (SRSF9 or SRp30C), and plant pre-mRNA-splicing factor SF2 (SR1). SRSF1 is a shuttling SR protein involved in constitutive and alternative splicing, nonsense-mediated mRNA decay (NMD), mRNA export and translation. It also functions as a splicing-factor oncoprotein that regulates apoptosis and proliferation to promote mammary epithelial cell transformation. SRSF9 has been implicated in the activity of many elements that control splice site selection, the alternative splicing of the glucocorticoid receptor beta in neutrophils and in the gonadotropin-releasing hormone pre-mRNA. It can also interact with other proteins implicated in alternative splicing, including YB-1, rSLM-1, rSLM-2, E4-ORF4, Nop30, and p32. Both, SRSF1 and SRSF9, contain two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RS domains rich in serine-arginine dipeptides. In contrast, SF2 contains two N-terminal RRMs and a C-terminal PSK domain rich in proline, serine and lysine residues. . Length = 72 |
| >gnl|CDD|240811 cd12365, RRM_RNPS1, RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-05
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 154 IFVGNL-PNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+ VG L N K HL E F +G +K+V + I N + G+ +V ++ P + A+
Sbjct: 1 LHVGKLTRNVNKDHL-KEIFSNYGTVKDVDLPIDREVNLPR--GYAYVEFESPEDAEKAI 57
Query: 212 KAVEFDGVEFHGRVLTVK 229
K + DG + G+ +TV+
Sbjct: 58 KHM--DGGQIDGQEVTVE 73
|
This subfamily corresponds to the RRM of RNPS1 and its eukaryotic homologs. RNPS1, also termed RNA-binding protein prevalent during the S phase, or SR-related protein LDC2, was originally characterized as a general pre-mRNA splicing activator, which activates both constitutive and alternative splicing of pre-mRNA in vitro.It has been identified as a protein component of the splicing-dependent mRNP complex, or exon-exon junction complex (EJC), and is directly involved in mRNA surveillance. Furthermore, RNPS1 is a splicing regulator whose activator function is controlled in part by CK2 (casein kinase II) protein kinase phosphorylation. It can also function as a squamous-cell carcinoma antigen recognized by T cells-3 (SART3)-binding protein, and is involved in the regulation of mRNA splicing. RNPS1 contains an N-terminal serine-rich (S) domain, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and the C-terminal arginine/serine/proline-rich (RS/P) domain. . Length = 73 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 34/148 (22%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 8 SAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPP-------PPSPTPPEPHNLHRPPKSSR 60
++P P PA P P + +P PP+P PP P + +R
Sbjct: 2731 ASPALPAAPAP-----PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTR 2785
Query: 61 PTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPP-----PPPPPAEQ 115
P + + ++ P+ +A +S P PPP PPPP
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 116 LQEPQSQGNDEIP--DAENRSPSSSLAT 141
G P D R PS S A
Sbjct: 2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAA 2873
|
Length = 3151 |
| >gnl|CDD|241023 cd12579, RRM2_hnRNPA0, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-05
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY-DGPAAEKSAM 211
K+FVG L + + + E F QFGP++ +I +K GFGFV + + +A+K+A+
Sbjct: 1 KLFVGGLKGDVGEGDLTEHFSQFGPVEKAEVIADKQTGKKR-GFGFVYFQNHDSADKAAV 59
Query: 212 KAVEFDGVEFH 222
V+F + H
Sbjct: 60 --VKFHPINGH 68
|
This subgroup corresponds to the RRM2 of hnRNP A0, a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A0 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 80 |
| >gnl|CDD|240789 cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-05
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+FVGNLP+ + F ++G + ++K Y GFV + + A+K
Sbjct: 1 KLFVGNLPDATTSEELRALFEKYGTVTECDVVKNY---------GFVHMEEEEDAEDAIK 51
Query: 213 AVEFDGVEFHGRVLTVK 229
A+ +G EF G+ + V+
Sbjct: 52 AL--NGYEFMGKRINVE 66
|
This subfamily corresponds to the RRM in CoAA (also known as RBM14 or PSP2) and RNA-binding protein 4 (RBM4). CoAA is a heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein identified as a nuclear receptor coactivator. It mediates transcriptional coactivation and RNA splicing effects in a promoter-preferential manner, and is enhanced by thyroid hormone receptor-binding protein (TRBP). CoAA contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a TRBP-interacting domain. RBM4 is a ubiquitously expressed splicing factor with two isoforms, RBM4A (also known as Lark homolog) and RBM4B (also known as RBM30), which are very similar in structure and sequence. RBM4 may also function as a translational regulator of stress-associated mRNAs as well as play a role in micro-RNA-mediated gene regulation. RBM4 contains two N-terminal RRMs, a CCHC-type zinc finger, and three alanine-rich regions within their C-terminal regions. This family also includes Drosophila RNA-binding protein lark (Dlark), a homolog of human RBM4. It plays an important role in embryonic development and in the circadian regulation of adult eclosion. Dlark shares high sequence similarity with RBM4 at the N-terminal region. However, Dlark has three proline-rich segments instead of three alanine-rich segments within the C-terminal region. . Length = 66 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 637
G P V T+N LI GL ++++A+E+LDEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (108), Expect = 3e-05
Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 5/258 (1%)
Query: 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE-VSKVMKSSGIKHNMK 507
+ + L + + ++ + L +G++++ALE + + ++
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKP-DVVLYNNIIRAFCGMGNMDRAIHIVKE 566
+L LKL + E + L P N+ +G + A+ ++++
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626
P + + G+ + ALE+++ L LG + +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 627 --MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684
E+A+E+L++ + + Y LG +A EY+ K +
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEAL 239
Query: 685 EALLKACCKSGRMQSALA 702
L + GR + AL
Sbjct: 240 YNLALLLLELGRYEEALE 257
|
Length = 291 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 39 PPPPSPTPPEP---HNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLR 95
PP P+P P EP RP + R + P + P+PPS
Sbjct: 2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD------RGDPRGPAPPS-------- 2615
Query: 96 LSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSS 138
P PPPP P+ EP +P E +
Sbjct: 2616 -PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657
|
Length = 3151 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS 576
V YN +I C G ++ A+ + KEM++ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|240776 cd12330, RRM2_Hrp1p, RNA recognition motif 2 in yeast nuclear polyadenylated RNA-binding protein 4 (Hrp1p or Nab4p) and similar proteins | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG LP + + E+F QFG + + L++ ++ ++ GFGFV +D +A +
Sbjct: 1 KIFVGGLPPDVTEEEFKEYFSQFGKVVDAQLMQDHDT-GRSRGFGFVTFDSESAVERVFS 59
Query: 213 AVEFDGVEFHGRVLTVK 229
A +E G+ + VK
Sbjct: 60 A---GMLELGGKQVEVK 73
|
This subfamily corresponds to the RRM1 of Hrp1p and similar proteins. Hrp1p or Nab4p, also termed cleavage factor IB (CFIB), is a sequence-specific trans-acting factor that is essential for mRNA 3'-end formation in yeast Saccharomyces cerevisiae. It can be UV cross-linked to RNA and specifically recognizes the (UA)6 RNA element required for both, the cleavage and poly(A) addition steps. Moreover, Hrp1p can shuttle between the nucleus and the cytoplasm, and play an additional role in the export of mRNAs to the cytoplasm. Hrp1p also interacts with Rna15p and Rna14p, two components of CF1A. In addition, Hrp1p functions as a factor directly involved in modulating the activity of the nonsense-mediated mRNA decay (NMD) pathway; it binds specifically to a downstream sequence element (DSE)-containing RNA and interacts with Upf1p, a component of the surveillance complex, further triggering the NMD pathway. Hrp1p contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an arginine-glycine-rich region harboring repeats of the sequence RGGF/Y. . Length = 75 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGV 747
YN LI G+ + G + EA +L ++MK++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE 646
T+N LI GL + ++E+A+E+ EM GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 77 SATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGN-----DEIPDAE 131
S T+ SPP+ PPPPPPPPPPP LQ+ S + A
Sbjct: 166 STTSFPISPPTE-------EPVLEVPPPPPPPPPPPPPSLQQSTSAIDLIKERKGQRSAA 218
Query: 132 NRSPSSSLATSQE 144
++ S S E
Sbjct: 219 GKTLVLSKPKSPE 231
|
In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248 |
| >gnl|CDD|240762 cd12316, RRM3_RBM19_RRM2_MRD1, RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and RNA recognition motif 2 found in multiple RNA-binding domain-containing protein 1 (MRD1) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-05
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++FV NLP + + E F FG I V + + +++ GF FV + P A
Sbjct: 1 RLFVRNLPFTTTEEELRELFEAFGEISEVHLPLD--KETKRSKGFAFVSFMFPEHAVKAY 58
Query: 212 KAVEFDGVEFHGRVLTV 228
+ DG F GR+L V
Sbjct: 59 SEL--DGSIFQGRLLHV 73
|
This subfamily corresponds to the RRM3 of RBM19 and RRM2 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). It is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events. . Length = 74 |
| >gnl|CDD|241011 cd12567, RRM3_RBM19, RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and similar proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-05
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-IKGYNNFEKNVGFGFVIYDGPAAEKSA 210
G++F+ NL + + + F ++GP+ V L I K GF FV Y P + A
Sbjct: 3 GRLFIRNLAYTCTEEDLEKLFSKYGPLSEVHLPIDKLTK--KPKGFAFVTYMIP---EHA 57
Query: 211 MKAV-EFDGVEFHGRVLTV 228
+KA E DG F GR+L +
Sbjct: 58 VKAFAELDGTVFQGRLLHL 76
|
This subgroup corresponds to the RRM3 of RBM19, also termed RNA-binding domain-1 (RBD-1), which is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 79 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 1/105 (0%)
Query: 40 PPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSK 99
PPPSP P L P + P A+ S + + +++
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSSPEETAR 184
Query: 100 LSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQE 144
PP PPP P+ A SP+ + S
Sbjct: 185 APSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229
|
Length = 1352 |
| >gnl|CDD|240783 cd12337, RRM1_SRSF4_like, RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-05
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++++G LP ++ V FF+ +G I+ + L KN GFGFV ++ P + A
Sbjct: 1 RVYIGRLPYRARERDVERFFKGYGRIREINL--------KN-GFGFVEFEDP---RDADD 48
Query: 213 AV-EFDGVEFHGRVLTVKLDDG 233
AV E +G E G + V+ G
Sbjct: 49 AVYELNGKELCGERVIVEHARG 70
|
This subfamily corresponds to the RRM1 in three serine/arginine (SR) proteins: serine/arginine-rich splicing factor 4 (SRSF4 or SRp75 or SFRS4), serine/arginine-rich splicing factor 5 (SRSF5 or SRp40 or SFRS5 or HRS), serine/arginine-rich splicing factor 6 (SRSF6 or SRp55). SRSF4 plays an important role in both, constitutive and alternative, splicing of many pre-mRNAs. It can shuttle between the nucleus and cytoplasm. SRSF5 regulates both alternative splicing and basal splicing. It is the only SR protein efficiently selected from nuclear extracts (NE) by the splicing enhancer (ESE) and essential for enhancer activation. SRSF6 preferentially interacts with a number of purine-rich splicing enhancers (ESEs) to activate splicing of the ESE-containing exon. It is the only protein from HeLa nuclear extract or purified SR proteins that specifically binds B element RNA after UV irradiation. SRSF6 may also recognize different types of RNA sites. Members in this family contain two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a C-terminal RS domains rich in serine-arginine dipeptides. . Length = 70 |
| >gnl|CDD|240857 cd12411, RRM_ist3_like, RNA recognition motif in ist3 family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAA 206
+++ I++G LP + + ++ F Q+G I ++ L++ K+ GF F+ Y+
Sbjct: 5 QYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLVRD-KKTGKSKGFAFLAYED--- 60
Query: 207 EKSAMKAVE-FDGVEFHGRVLTV 228
++S + AV+ +G++ GR + V
Sbjct: 61 QRSTILAVDNLNGIKLLGRTIRV 83
|
This subfamily corresponds to the RRM of the ist3 family that includes fungal U2 small nuclear ribonucleoprotein (snRNP) component increased sodium tolerance protein 3 (ist3), X-linked 2 RNA-binding motif proteins (RBMX2) found in Metazoa and plants, and similar proteins. Gene IST3 encoding ist3, also termed U2 snRNP protein SNU17 (Snu17p), is a novel yeast Saccharomyces cerevisiae protein required for the first catalytic step of splicing and for progression of spliceosome assembly. It binds specifically to the U2 snRNP and is an intrinsic component of prespliceosomes and spliceosomes. Yeast ist3 contains an atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). In the yeast pre-mRNA retention and splicing complex, the atypical RRM of ist3 functions as a scaffold that organizes the other two constituents, Bud13p (bud site selection 13) and Pml1p (pre-mRNA leakage 1). Fission yeast Schizosaccharomyces pombe gene cwf29 encoding ist3, also termed cell cycle control protein cwf29, is an RNA-binding protein complexed with cdc5 protein 29. It also contains one RRM. The biological function of RBMX2 remains unclear. It shows high sequence similarity to yeast ist3 protein and harbors one RRM as well. . Length = 89 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 7e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 676 GLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708
GL+ DV TY L+ C++GR+ A+ + EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV 751
YN LIDG + G V EA +L ++MK+ G++PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|240900 cd12454, RRM2_RIM4_like, RNA recognition motif 2 in yeast meiotic activator RIM4 and similar proteins | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-05
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IFVG L + K + E F + G I V LIK N+ N F F+ ++ E++A +A
Sbjct: 6 IFVGQLSPDVTKEELNERFSRHGKILEVNLIKRANH--TNA-FAFIKFE---REQAAARA 59
Query: 214 VE-FDGVEFHGRVLTVKLDD 232
VE + + + V+ +
Sbjct: 60 VESENHSMLKNKTMHVQYKE 79
|
This subfamily corresponds to the RRM2 of RIM4, also termed regulator of IME2 protein 4, a putative RNA binding protein that is expressed at elevated levels early in meiosis. It functions as a meiotic activator required for both the IME1- and IME2-dependent pathways of meiotic gene expression, as well as early events of meiosis, such as meiotic division and recombination, in Saccharomyces cerevisiae. RIM4 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes a putative RNA-binding protein termed multicopy suppressor of sporulation protein Msa1. It is a putative RNA-binding protein encoded by a novel gene, msa1, from the fission yeast Schizosaccharomyces pombe. Msa1 may be involved in the inhibition of sexual differentiation by controlling the expression of Ste11-regulated genes, possibly through the pheromone-signaling pathway. Like RIM4, Msa1 also contains two RRMs, both of which are essential for the function of Msa1. . Length = 80 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-05
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 578 TFMPIIHGFARAGEMKRALEIFDMMRRSGC 607
T+ +I G+ +AG+++ ALE+F M+ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|241022 cd12578, RRM1_hnRNPA_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+F+G L + +F Q+G I + +++K N +++ GFGFV + + +AM
Sbjct: 1 KLFIGGLSYETTDDSLKNYFSQWGEITDCVVMKDPNT-KRSRGFGFVTFASASEVDAAMN 59
Query: 213 A 213
A
Sbjct: 60 A 60
|
This subfamily corresponds to the RRM1 in hnRNP A0, hnRNP A1, hnRNP A2/B1, hnRNP A3 and similar proteins. hnRNP A0 is a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A1 is an abundant eukaryotic nuclear RNA-binding protein that may modulate splice site selection in pre-mRNA splicing. hnRNP A2/B1 is an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). Many mRNAs, such as myelin basic protein (MBP), myelin-associated oligodendrocytic basic protein (MOBP), carboxyanhydrase II (CAII), microtubule-associated protein tau, and amyloid precursor protein (APP) are trafficked by hnRNP A2/B1. hnRNP A3 is also a RNA trafficking response element-binding protein that participates in the trafficking of A2RE-containing RNA. The hnRNP A subfamily is characterized by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 78 |
| >gnl|CDD|240787 cd12341, RRM_hnRNPC_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein C (hnRNP C)-related proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-05
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Query: 153 KIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++FVGNL + + K + E F ++G I + L KGY GFV +D E+ A
Sbjct: 2 RVFVGNLNTDKVSKEDLEEIFSKYGKILGISLHKGY---------GFVQFD---NEEDAR 49
Query: 212 KAV-EFDGVEFHGRVLTVK 229
AV +G E G+ L +
Sbjct: 50 AAVAGENGREIAGQKLDIN 68
|
This subfamily corresponds to the RRM in the hnRNP C-related protein family, including hnRNP C proteins, Raly, and Raly-like protein (RALYL). hnRNP C proteins, C1 and C2, are produced by a single coding sequence. They are the major constituents of the heterogeneous nuclear RNA (hnRNA) ribonucleoprotein (hnRNP) complex in vertebrates. They bind hnRNA tightly, suggesting a central role in the formation of the ubiquitous hnRNP complex; they are involved in the packaging of the hnRNA in the nucleus and in processing of pre-mRNA such as splicing and 3'-end formation. Raly, also termed autoantigen p542, is an RNA-binding protein that may play a critical role in embryonic development. The biological role of RALYL remains unclear. It shows high sequence homology with hnRNP C proteins and Raly. Members of this family are characterized by an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal auxiliary domain. The Raly proteins contain a glycine/serine-rich stretch within the C-terminal regions, which is absent in the hnRNP C proteins. Thus, the Raly proteins represent a newly identified class of evolutionarily conserved autoepitopes. . Length = 68 |
| >gnl|CDD|240823 cd12377, RRM3_Hu, RNA recognition motif 3 in the Hu proteins family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVI---YDGPAAEKSA 210
IFV NLP + L+ + F FG + NV +I+ K G+GFV Y E++
Sbjct: 4 IFVYNLPPDADESLLWQLFSPFGAVTNVKVIRDLTT-NKCKGYGFVTMTNY-----EEAY 57
Query: 211 MKAVEFDGVEFHGRVLTV 228
+G GRVL V
Sbjct: 58 SAIASLNGYRLGGRVLQV 75
|
This subfamily corresponds to the RRM3 of the Hu proteins family which represent a group of RNA-binding proteins involved in diverse biological processes. Since the Hu proteins share high homology with the Drosophila embryonic lethal abnormal vision (ELAV) protein, the Hu family is sometimes referred to as the ELAV family. Drosophila ELAV is exclusively expressed in neurons and is required for the correct differentiation and survival of neurons in flies. The neuronal members of the Hu family include Hu-antigen B (HuB or ELAV-2 or Hel-N1), Hu-antigen C (HuC or ELAV-3 or PLE21), and Hu-antigen D (HuD or ELAV-4), which play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. Hu-antigen R (HuR or ELAV-1 or HuA) is the ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. Hu proteins perform their cytoplasmic and nuclear molecular functions by coordinately regulating functionally related mRNAs. In the cytoplasm, Hu proteins recognize and bind to AU-rich RNA elements (AREs) in the 3' untranslated regions (UTRs) of certain target mRNAs, such as GAP-43, vascular epithelial growth factor (VEGF), the glucose transporter GLUT1, eotaxin and c-fos, and stabilize those ARE-containing mRNAs. They also bind and regulate the translation of some target mRNAs, such as neurofilament M, GLUT1, and p27. In the nucleus, Hu proteins function as regulators of polyadenylation and alternative splicing. Each Hu protein contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. . Length = 78 |
| >gnl|CDD|241015 cd12571, RRM6_RBM19, RNA recognition motif 6 in RNA-binding protein 19 (RBM19) and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KI V N+P + E F FG +K V L K + GFGFV + K A K
Sbjct: 2 KILVRNIPFEATVKELRELFSTFGELKTVRLPKKMTGTGSHRGFGFVDFITKQDAKRAFK 61
Query: 213 AVEFDGVEFHGRVL 226
A+ +GR L
Sbjct: 62 ALC-HSTHLYGRRL 74
|
This subgroup corresponds to the RRM6 of RBM19, also termed RNA-binding domain-1 (RBD-1), which is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 79 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 9e-05
Identities = 36/157 (22%), Positives = 46/157 (29%), Gaps = 33/157 (21%)
Query: 10 PHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPK- 68
P P A P P + P PPSP PP+ H PP S P ++
Sbjct: 2589 PDAPPQSAR-----PRAPVDDRGDP--RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPH 2641
Query: 69 NPFKNLLNSATTHVPSPPSHSLSAKLRLSSK-------------------------LSPP 103
P P+P S + R + L+ P
Sbjct: 2642 PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADP 2701
Query: 104 PPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLA 140
PPPPP P PA + A SP+ A
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAA 2738
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 34/158 (21%), Positives = 50/158 (31%), Gaps = 25/158 (15%)
Query: 9 APHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPK 68
A + P P L+ + PP SP P P PP S++PT P
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP-----PPTSAQPTAPPPPP 2843
Query: 69 NPFKNLLNSATTHVPS------PPSHSLSAK--------LRLSSKLSPPPPPPP---PPP 111
P L + P PPS S +AK +R ++ + PP
Sbjct: 2844 GPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903
Query: 112 PAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFR 149
E+ +PQ+ P + + P R
Sbjct: 2904 QPERPPQPQAP---PPPQPQPQPPPPPQPQPPPPPPPR 2938
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 28/137 (20%), Positives = 40/137 (29%), Gaps = 7/137 (5%)
Query: 6 SLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSK 65
SL +P P P + + PP + P PP S S
Sbjct: 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856
Query: 66 IPKNPFKNLLNS-ATTHVPSPPSHSLSAKL------RLSSKLSPPPPPPPPPPPAEQLQE 118
P + S + P+ P+ +L R + + PP P PP +
Sbjct: 2857 APGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP 2916
Query: 119 PQSQGNDEIPDAENRSP 135
PQ Q P P
Sbjct: 2917 PQPQPQPPPPPQPQPPP 2933
|
Length = 3151 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574
+ YN ++ A G+ D A+ +++EM+ +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEP 329
+ ++ A+ GD A E M+A G++P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV 681
TY T++ G G +A E F +++ G+E DV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGI 362
Y +LI Y +EEAL ++MKE+G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|240682 cd12236, RRM_snRNP70, RNA recognition motif in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV L + + F ++GPIK + L++ K G+ F+ ++ K+A K
Sbjct: 4 LFVARLNYDTTESKLRREFEEYGPIKRIRLVRDKKT-GKPRGYAFIEFEHERDMKAAYKY 62
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKN 238
DG + GR + V ++ GR +K
Sbjct: 63 A--DGKKIDGRRVLVDVERGRTVKG 85
|
This subfamily corresponds to the RRM of U1-70K, also termed snRNP70, a key component of the U1 snRNP complex, which is one of the key factors facilitating the splicing of pre-mRNA via interaction at the 5' splice site, and is involved in regulation of polyadenylation of some viral and cellular genes, enhancing or inhibiting efficient poly(A) site usage. U1-70K plays an essential role in targeting the U1 snRNP to the 5' splice site through protein-protein interactions with regulatory RNA-binding splicing factors, such as the RS protein ASF/SF2. Moreover, U1-70K protein can specifically bind to stem-loop I of the U1 small nuclear RNA (U1 snRNA) contained in the U1 snRNP complex. It also mediates the binding of U1C, another U1-specific protein, to the U1 snRNP complex. U1-70K contains a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by an adjacent glycine-rich region at the N-terminal half, and two serine/arginine-rich (SR) domains at the C-terminal half. The RRM is responsible for the binding of stem-loop I of U1 snRNA molecule. Additionally, the most prominent immunodominant region that can be recognized by auto-antibodies from autoimmune patients may be located within the RRM. The SR domains are involved in protein-protein interaction with SR proteins that mediate 5' splice site recognition. For instance, the first SR domain is necessary and sufficient for ASF/SF2 Binding. The family also includes Drosophila U1-70K that is an essential splicing factor required for viability in flies, but its SR domain is dispensable. The yeast U1-70k doesn't contain easily recognizable SR domains and shows low sequence similarity in the RRM region with other U1-70k proteins and therefore not included in this family. The RRM domain is dispensable for yeast U1-70K function. Length = 91 |
| >gnl|CDD|240808 cd12362, RRM3_CELF1-6, RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 17/86 (19%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGY--NNFEKNVGFGFVIYDGPAAEKSAM 211
+F+ +LPN + + ++ F P NVI K + N ++ FGFV YD P SA
Sbjct: 1 LFIYHLPN---EFTDQDLYQLFAPFGNVISAKVFVDKNTGQSKCFGFVSYDNPE---SAQ 54
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLK 237
A++ +G + G+RLK
Sbjct: 55 AAIK----AMNGFQV-----GGKRLK 71
|
This subgroup corresponds to the RRM3 of the CUGBP1 and ETR-3-like factors (CELF) or BRUNOL (Bruno-like) proteins, a family of structurally related RNA-binding proteins involved in the regulation of pre-mRNA splicing in the nucleus and in the control of mRNA translation and deadenylation in the cytoplasm. The family contains six members: CELF-1 (also termed BRUNOL-2, or CUG-BP1, or NAPOR, or EDEN-BP), CELF-2 (also termed BRUNOL-3, or ETR-3, or CUG-BP2, or NAPOR-2), CELF-3 (also termed BRUNOL-1, or TNRC4, or ETR-1, or CAGH4, or ER DA4), CELF-4 (also termed BRUNOL-4), CELF-5 (also termed BRUNOL-5), CELF-6 (also termed BRUNOL-6). They all contain three highly conserved RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains): two consecutive RRMs (RRM1 and RRM2) situated in the N-terminal region followed by a linker region and the third RRM (RRM3) close to the C-terminus of the protein. The low sequence conservation of the linker region is highly suggestive of a large variety in the co-factors that associate with the various CELF family members. Based on both sequence similarity and function, the CELF family can be divided into two subfamilies, the first containing CELFs 1 and 2, and the second containing CELFs 3, 4, 5, and 6. The different CELF proteins may act through different sites on at least some substrates. Furthermore, CELF proteins may interact with each other in varying combinations to influence alternative splicing in different contexts. . Length = 73 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 14/144 (9%)
Query: 7 LSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPP--------KS 58
L +PH P P T P P +S Q P PP PH L + P
Sbjct: 237 LPSPHPPLQPQTASQQSPQPPAPSS---RHPQSSHHGPGPPMPHALQQGPVFLQHPSSNP 293
Query: 59 SRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPP---PPPAEQ 115
+P + P L + A H +PPS S + + PP P P PPP
Sbjct: 294 PQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTP 353
Query: 116 LQEPQSQGNDEIPDAENRSPSSSL 139
+ + +Q + P + SP +
Sbjct: 354 IPQLPNQSHKHPPHLQGPSPFPQM 377
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 37/139 (26%), Positives = 46/139 (33%), Gaps = 14/139 (10%)
Query: 8 SAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSP----TPPEPHNLHRPPKSSRPTR 63
APH AT L P S + PP P TP P RPP ++ P
Sbjct: 2710 PAPH-ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768
Query: 64 SKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQG 123
P P + P SLS S+ S P P P PPA L +
Sbjct: 2769 PAPPAAP----AAGPPRRLTRPAVASLSE-----SRESLPSPWDPADPPAAVLAPAAALP 2819
Query: 124 NDEIPDAENRSPSSSLATS 142
P P+S+ T+
Sbjct: 2820 PAASPAGPLPPPTSAQPTA 2838
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 31/141 (21%), Positives = 45/141 (31%), Gaps = 21/141 (14%)
Query: 24 PHHPTTTSLSFSLKQPP---PPSPTPPEPHNLHRPPKSSRPTRSKIP----KNPFKNLLN 76
P L F ++ P PPS H P ++S PTR + PF
Sbjct: 341 PRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPG 400
Query: 77 SATTHVPSPPSHSLSAKLRLSSKLSPPPPPP--------------PPPPPAEQLQEPQSQ 122
P+ P + + + PPPP P PPP Q P ++
Sbjct: 401 GDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE 460
Query: 123 GNDEIPDAENRSPSSSLATSQ 143
+ PD R +L +
Sbjct: 461 PAPDDPDDATRKALDALRERR 481
|
Length = 3151 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS 365
Y LI +EEAL ++MKE GIE
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|240840 cd12394, RRM1_RBM34, RNA recognition motif 1 in RNA-binding protein 34 (RBM34) and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPI----------------KNVILIKGYNNFEKNVGFG 197
+FVGNLP KK + + F+QFGPI K V IK + +K+
Sbjct: 3 VFVGNLPLTTKKKDLKKLFKQFGPIESVRFRSVPVKEKKLPKKVAAIKKKFHDKKDNVNA 62
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+V++ E+SA KA++ +G EF G + V
Sbjct: 63 YVVF---KEEESAEKALKLNGTEFEGHHIRV 90
|
This subfamily corresponds to the RRM1 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 91 |
| >gnl|CDD|240773 cd12327, RRM2_DAZAP1, RNA recognition motif 2 in Deleted in azoospermia-associated protein 1 (DAZAP1) and similar proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG LP + + + ++F QFG + V+++ + ++ GFGF+ ++ +E S +
Sbjct: 4 KIFVGGLPPNVTETDLRKYFSQFGTVTEVVVMYDHEK-KRPRGFGFITFE---SEDSVDQ 59
Query: 213 AVEFDGVEFHGRVLTVK 229
V + +G+ + VK
Sbjct: 60 VVNEHFHDINGKKVEVK 76
|
This subfamily corresponds to the RRM2 of DAZAP1 or DAZ-associated protein 1, also termed proline-rich RNA binding protein (Prrp), a multi-functional ubiquitous RNA-binding protein expressed most abundantly in the testis and essential for normal cell growth, development, and spermatogenesis. DAZAP1 is a shuttling protein whose acetylated is predominantly nuclear and the nonacetylated form is in cytoplasm. DAZAP1 also functions as a translational regulator that activates translation in an mRNA-specific manner. DAZAP1 was initially identified as a binding partner of Deleted in Azoospermia (DAZ). It also interacts with numerous hnRNPs, including hnRNP U, hnRNP U like-1, hnRNPA1, hnRNPA/B, and hnRNP D, suggesting DAZAP1 might associate and cooperate with hnRNP particles to regulate adenylate-uridylate-rich elements (AU-rich element or ARE)-containing mRNAs. DAZAP1 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal proline-rich domain. . Length = 80 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 38 QPPPPSPTPPEPHNLH-RPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRL 96
QPPPPS P P P +S +++P+ F L + PS P S+ A
Sbjct: 187 QPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPP-- 244
Query: 97 SSKLSPPPPPPPPPPP 112
+ PPP PPP
Sbjct: 245 IPPVIQYVAPPPVPPP 260
|
Length = 582 |
| >gnl|CDD|240719 cd12273, RRM1_NEFsp, RNA recognition motif 1 in vertebrate putative RNA exonuclease NEF-sp | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++ G P V F GP++ V ++ F+ ++ ++A A
Sbjct: 2 VYAGPFPTSFCLSDVKRLFETCGPVRKVTML-----SRTVQPHAFITFE---NLEAAQLA 53
Query: 214 VE-FDGVEFHGRVLTVK 229
+E +G G + V+
Sbjct: 54 IETLNGASVDGNCIKVQ 70
|
This subfamily corresponds to the RRM1 of NEF-sp., including uncharacterized putative RNA exonuclease NEF-sp found in vertebrates. Although its cellular functions remains unclear, NEF-sp contains an exonuclease domain and two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), suggesting it may possess both exonuclease and RNA-binding activities. . Length = 71 |
| >gnl|CDD|215605 PLN03153, PLN03153, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 26/121 (21%)
Query: 43 SPTPPEPHNLHRPPKSSRPTRSK-------------IPKNPFKNLLNSATT----HV--- 82
SP P L SR R + + +L+ S TT H
Sbjct: 3 SPHRPCSSPLSLSRTRSRRWRHSRTGTAVVAVAALLLSTTAWLSLVFSGTTARCWHRFKD 62
Query: 83 --PSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAE-QLQEPQSQGNDEIPDAENRSPSSSL 139
SP + + + PPPP P P+ L + N + + E + L
Sbjct: 63 WEGSPDTLLWNKRYHHPIVTPLPPPPSSPSLPSSLLLDHFR---NRSLSEIERLKVEAEL 119
Query: 140 A 140
+
Sbjct: 120 S 120
|
Length = 537 |
| >gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation region | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 12/142 (8%)
Query: 6 SLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSK 65
+ + H P HPT + L F P P+ PH R P P
Sbjct: 131 AFTQHHRPVITGHSGISASPHPTPSPLHFPTSPILPQQPSSYFPHTAIRYPPHLHPQD-- 188
Query: 66 IPKNPFKNLLNSATTHVPSPPSHSLSAKLR---LSSKLSPPPPPP------PPPPPAEQL 116
P F L+ ++ P+ S K+ L + + PPPPP P P P +
Sbjct: 189 -PLKEFVQLVCDPSSQQAGQPNGSGQGKVPNHFLPTPMLAPPPPPPMARPVPLPMPDTKP 247
Query: 117 QEPQSQGNDEIPDAENRSPSSS 138
++G P + S S+
Sbjct: 248 PTTSTEGGATSPTSPTYSTPST 269
|
Length = 295 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP 539
++TY+ L+ K D AV E++ GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712
+ TY ALL A K+G ALAV +EM A +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV 541
TY+ LI+G K +F+++ G++PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 20/128 (15%)
Query: 20 LTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSAT 79
L P P + S SL PP + T P PP+S +PF + A
Sbjct: 415 LQSVPAQPPVLTQSQSL---PPKASTHPHSGLHSGPPQSPFAQ------HPFTSGGLPAI 465
Query: 80 THVPSPPSHSLSAKLRLSSKLSPP----------PPPPPPPPPAEQLQEPQSQGND-EIP 128
PS P+ + +A R SS PP P PP PP + +EP + + E P
Sbjct: 466 GPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESP 525
Query: 129 DAENRSPS 136
RSPS
Sbjct: 526 PPPPRSPS 533
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 27/113 (23%), Positives = 34/113 (30%), Gaps = 11/113 (9%)
Query: 10 PHFPHTPATLLTHKPHHPTTTSLSFSLKQPPP-PSPTPPEPHNLHRPPKSSRPTRSKIPK 68
P P + + T TS + K P P T PP + K P+
Sbjct: 225 PDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPE 284
Query: 69 NPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPP---------PPPPPPPPP 112
K A+ SP S S K L+ P P P P PP
Sbjct: 285 ASPKE-SEEASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKPQSPP 336
|
This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414 |
| >gnl|CDD|241014 cd12570, RRM5_MRD1, RNA recognition motif 5 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
KI V NLP K V F +G +K+V + K ++ + GF FV + +AM
Sbjct: 1 TKILVKNLPFEATKKDVRTLFSSYGQLKSVRVPKKFDQSAR--GFAFVEFSTAKEALNAM 58
Query: 212 KAVEFDGVEFHGRVLTVK 229
A++ GR L ++
Sbjct: 59 NALK--DTHLLGRRLVLQ 74
|
This subgroup corresponds to the RRM5 of MRD1 which is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well-conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). MRD1 is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. It contains 5 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which may play an important structural role in organizing specific rRNA processing events. . Length = 76 |
| >gnl|CDD|240858 cd12412, RRM_DAZL_BOULE, RNA recognition motif in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+IFVG +P + + +FF +FG +K+V +I K G+GFV ++ ++ A K
Sbjct: 4 RIFVGGIPPDTTEEELRDFFSRFGSVKDVKIITDRAGVSK--GYGFVTFE---TQEDAEK 58
Query: 213 AVEFDGVEFHGRVLTV 228
+ + F G+ L +
Sbjct: 59 ILAMGNLNFRGKKLNI 74
|
This subfamily corresponds to the RRM domain of two Deleted in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE. BOULE is the founder member of the family and DAZL arose from BOULE in an ancestor of vertebrates. The DAZ gene subsequently originated from a duplication transposition of the DAZL gene. Invertebrates contain a single DAZ homolog, BOULE, while vertebrates, other than catarrhine primates, possess both BOULE and DAZL genes. The catarrhine primates possess BOULE, DAZL, and DAZ genes. The family members encode closely related RNA-binding proteins that are required for fertility in numerous organisms. These proteins contain an RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a varying number of copies of a DAZ motif, believed to mediate protein-protein interactions. DAZL and BOULE contain a single copy of the DAZ motif, while DAZ proteins can contain 8-24 copies of this repeat. Although their specific biochemical functions remain to be investigated, DAZL proteins may interact with poly(A)-binding proteins (PABPs), and act as translational activators of specific mRNAs during gametogenesis. . Length = 80 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 35 SLKQPP---PPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLS 91
SL Q P PP L P ++ + +S + +P PPS +L
Sbjct: 347 SLGQSPNLRSSQLPPPTKRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPS-ALP 405
Query: 92 AKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEET 146
+ + SS PP P P +L P + P +S T +
Sbjct: 406 SHVGASSSKHHRLPPSVLPGP--RLSSPSPSPSLPTRRPGTPPPPASPPTPSPPS 458
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|240769 cd12323, RRM2_MSI, RNA recognition motif 2 in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPAAEK 208
KIFVG L + V ++F QFG +++ +L+ F+K GFGFV ++ +E
Sbjct: 1 KIFVGGLSANTTEDDVKKYFSQFGKVEDAMLM-----FDKQTNRHRGFGFVTFE---SED 52
Query: 209 SAMKAVEFDGVEFH 222
K E + FH
Sbjct: 53 VVDKVCE---IHFH 63
|
This subfamily corresponds to the RRM2.in Musashi-1 (also termed Msi1), a neural RNA-binding protein putatively expressed in central nervous system (CNS) stem cells and neural progenitor cells, and associated with asymmetric divisions in neural progenitor cells. It is evolutionarily conserved from invertebrates to vertebrates. Musashi-1 is a homolog of Drosophila Musashi and Xenopus laevis nervous system-specific RNP protein-1 (Nrp-1). It has been implicated in the maintenance of the stem-cell state, differentiation, and tumorigenesis. It translationally regulates the expression of a mammalian numb gene by binding to the 3'-untranslated region of mRNA of Numb, encoding a membrane-associated inhibitor of Notch signaling, and further influences neural development. Moreover, Musashi-1 represses translation by interacting with the poly(A)-binding protein and competes for binding of the eukaryotic initiation factor-4G (eIF-4G). Musashi-2 (also termed Msi2) has been identified as a regulator of the hematopoietic stem cell (HSC) compartment and of leukemic stem cells after transplantation of cells with loss and gain of function of the gene. It influences proliferation and differentiation of HSCs and myeloid progenitors, and further modulates normal hematopoiesis and promotes aggressive myeloid leukemia. Both, Musashi-1 and Musashi-2, contain two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function. . Length = 74 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 4e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603
+P T+ +I G RAG + A+E+ D M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 42 PSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLS 101
P+P P R P+++R P +A +PP A L +
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPE-----AAAPNGAAAPPDGVWGAALAGAPLAL 309
Query: 102 PPPPPPPPPPPAEQLQE 118
P PP PPPP PA +E
Sbjct: 310 PAPPDPPPPAPAGDAEE 326
|
Length = 3151 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISP 644
+ T+NAL+L L + + A+ +L+EM +G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|240764 cd12318, RRM5_RBM19_like, RNA recognition motif 5 in RNA-binding protein 19 (RBM19 or RBD-1) and similar proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 4e-04
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 154 IFVGNLPNW------IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDG 203
+FV NL N+ +KKH F + G +++V + K + G+GFV +
Sbjct: 3 LFVKNL-NFKTTEETLKKH-----FEKCGGVRSVTIAKKKDPKGPGKLLSMGYGFVEFKS 56
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVKL 230
A + A+K ++ G G L +KL
Sbjct: 57 KEAAQKALKRLQ--GTVLDGHALELKL 81
|
This subfamily corresponds to the RRM5 of RBM19 and RRM4 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 82 |
| >gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 36/155 (23%), Positives = 46/155 (29%), Gaps = 12/155 (7%)
Query: 19 LLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHN--------LHRPPKSSRPTRSKIPKNP 70
L T P P TT S P PPSP P N L PP + K K
Sbjct: 45 LETGYPFCPPTTPHPSSQPPPCPPSPGHPPQTNDTHEKDLALQPPPGG----KKKEKKKK 100
Query: 71 FKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDA 130
P + P PPPP E P D
Sbjct: 101 ETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPPPPGGEGEVEGGPSPGPGPGPLDQ 160
Query: 131 ENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKK 165
E P +L + E +F Q V +L ++ ++
Sbjct: 161 EGLLPGVALRLQKWEQQFDQLVDNIVVDLRDYWQR 195
|
Length = 200 |
| >gnl|CDD|240798 cd12352, RRM1_TIA1_like, RNA recognition motif 1 in granule-associated RNA binding proteins p40-TIA-1 and TIAR | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
++VGNL + + L+ E F Q GPIK+ LI+ N + FV Y
Sbjct: 1 LYVGNLDRTVTEDLLAELFSQIGPIKSCKLIRE----HGNDPYAFVEY 44
|
This subfamily corresponds to the RRM1 of nucleolysin TIA-1 isoform p40 (p40-TIA-1 or TIA-1) and nucleolysin TIA-1-related protein (TIAR), both of which are granule-associated RNA binding proteins involved in inducing apoptosis in cytotoxic lymphocyte (CTL) target cells. TIA-1 and TIAR share high sequence similarity. They are expressed in a wide variety of cell types. TIA-1 can be phosphorylated by a serine/threonine kinase that is activated during Fas-mediated apoptosis.TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. Both, TIA-1 and TIAR, bind specifically to poly(A) but not to poly(C) homopolymers. They are composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. TIA-1 and TIAR interact with RNAs containing short stretches of uridylates and their RRM2 can mediate the specific binding to uridylate-rich RNAs. The C-terminal auxiliary domain may be responsible for interacting with other proteins. In addition, TIA-1 and TIAR share a potential serine protease-cleavage site (Phe-Val-Arg) localized at the junction between their RNA binding domains and their C-terminal auxiliary domains. Length = 72 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 5e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 577 RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP 609
T+ ++ A+AG+ AL + + M+ SG P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|240892 cd12446, RRM_RBM25, RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 5e-04
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 153 KIFVGNLP-----NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAE 207
+FVGN+P ++I+K L + G + + +K + K FGF ++ P
Sbjct: 2 TVFVGNIPEGVSDDFIRKLL-----EKCGKVLSWKRVKDPST-GKLKAFGFCEFEDPE-- 53
Query: 208 KSAMKAVE-FDGVEFHGRVLTVKLDD 232
A++A+ +G+E G+ L VK+D
Sbjct: 54 -GALRALRLLNGLELGGKKLLVKVDA 78
|
This subfamily corresponds to the RRM of RBM25, also termed Arg/Glu/Asp-rich protein of 120 kDa (RED120), or protein S164, or RNA-binding region-containing protein 7, an evolutionary-conserved splicing coactivator SRm160 (SR-related nuclear matrix protein of 160 kDa, )-interacting protein. RBM25 belongs to a family of RNA-binding proteins containing a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), at the N-terminus, a RE/RD-rich (ER) central region, and a C-terminal proline-tryptophan-isoleucine (PWI) motif. It localizes to the nuclear speckles and associates with multiple splicing components, including splicing cofactors SRm160/300, U snRNAs, assembled splicing complexes, and spliced mRNAs. It may play an important role in pre-mRNA processing by coupling splicing with mRNA 3'-end formation. Additional research indicates that RBM25 is one of the RNA-binding regulators that direct the alternative splicing of apoptotic factors. It can activate proapoptotic Bcl-xS 5'ss by binding to the exonic splicing enhancer, CGGGCA, and stabilize the pre-mRNA-U1 snRNP through interaction with hLuc7A, a U1 snRNP-associated factor. . Length = 84 |
| >gnl|CDD|240780 cd12334, RRM1_SF3B4, RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 5e-04
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVIL----IKGYNNFEKNVGFGFVIYDGPAAEKS 209
++VGNL + + L+ E F Q GP+ NV + + + G+GFV + E+
Sbjct: 1 VYVGNLDEKVTEELLWELFIQAGPVVNVHIPKDRVTQAHQ-----GYGFVEFLS---EED 52
Query: 210 AMKAVE-FDGVEFHGRVLTVK 229
A A++ + ++ +G+ + V
Sbjct: 53 ADYAIKIMNMIKLYGKPIRVN 73
|
This subfamily corresponds to the RRM1 of SF3B4, also termed pre-mRNA-splicing factor SF3b 49 kDa (SF3b50), or spliceosome-associated protein 49 (SAP 49). SF3B4 a component of the multiprotein complex splicing factor 3b (SF3B), an integral part of the U2 small nuclear ribonucleoprotein (snRNP) and the U11/U12 di-snRNP. SF3B is essential for the accurate excision of introns from pre-messenger RNA, and is involved in the recognition of the pre-mRNA's branch site within the major and minor spliceosomes. SF3B4 functions to tether U2 snRNP with pre-mRNA at the branch site during spliceosome assembly. It is an evolutionarily highly conserved protein with orthologs across diverse species. SF3B4 contains two closely adjacent N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It binds directly to pre-mRNA and also interacts directly and highly specifically with another SF3B subunit called SAP 145. . Length = 74 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 24/113 (21%), Positives = 30/113 (26%), Gaps = 14/113 (12%)
Query: 37 KQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRL 96
P SP+ P + P S P P + + PS
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDS-------SLPPAPSSFQSDTPPPSPE 229
Query: 97 SSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFR 149
S PPP P PPP Q P +P S+ AT
Sbjct: 230 SPTNPSPPPGPAAPPPPPVQQVPPLST-------AKPTPPSASATPAPIGGIT 275
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 682 FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT 716
TY L+ CK+GR++ AL + KEM + I +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|240730 cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 6e-04
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG-YNNFEKNVGFGFVIYDGPAAEKSAMK 212
++VGNL I + + F FG I+ V L + K G+GF+ + K A++
Sbjct: 1 LYVGNLHFNITEDDLRGIFEPFGEIEFVQLQRDPETGRSK--GYGFIQFADAEDAKKALE 58
Query: 213 AVEFDGVEFHGRVLTV 228
+ +G E GR + V
Sbjct: 59 --QLNGFELAGRPIKV 72
|
This subfamily corresponds to the RRM2 of RBM39 (also termed HCC1), a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 32/126 (25%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 24 PHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTR--SKIPKNPFKNLLNSATTH 81
P S + QPP P P +P L +P + P+ P +
Sbjct: 220 LPAP-----SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
Query: 82 VPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQ--GNDEIPDAENRSPSSSL 139
P PP + + L + P PPP P +Q+PQ Q G S
Sbjct: 275 QP-PPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQRE 333
Query: 140 ATSQEE 145
A SQEE
Sbjct: 334 ALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|240816 cd12370, RRM1_PUF60, RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 7e-04
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF-EKNVGFGFVIYDGPAAEKSA 210
+++VG++ + + + + F FGPIK++ + ++ K+ GF FV Y+ P A + A
Sbjct: 1 CRVYVGSISFELGEDTIRQAFSPFGPIKSIDM--SWDPVTMKHKGFAFVEYEVPEAAQLA 58
Query: 211 MKAVEFDGVEFHGRVLTV 228
++ + +GV GR + V
Sbjct: 59 LE--QMNGVMLGGRNIKV 74
|
This subfamily corresponds to the RRM1 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1). PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. Research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 76 |
| >gnl|CDD|240774 cd12328, RRM2_hnRNPA_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILI--KGYNNFEKNVGFGFVIYDGP-AAEK 208
K+FVG L + + + E+F Q+G +++V ++ K K GF FV +D +K
Sbjct: 1 KLFVGGLKEDVTEEDLREYFSQYGNVESVEIVTDKETG---KKRGFAFVTFDDYDPVDK 56
|
This subfamily corresponds to the RRM2 of hnRNP A0, hnRNP A1, hnRNP A2/B1, hnRNP A3 and similar proteins. hnRNP A0 is a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A1 is an abundant eukaryotic nuclear RNA-binding protein that may modulate splice site selection in pre-mRNA splicing. hnRNP A2/B1 is an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). Many mRNAs, such as myelin basic protein (MBP), myelin-associated oligodendrocytic basic protein (MOBP), carboxyanhydrase II (CAII), microtubule-associated protein tau, and amyloid precursor protein (APP) are trafficked by hnRNP A2/B1. hnRNP A3 is also a RNA trafficking response element-binding protein that participates in the trafficking of A2RE-containing RNA. The hnRNP A subfamily is characterized by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 73 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 8e-04
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPT 330
+ +++ + G + A + F+ M+ RGIEP
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|240788 cd12342, RRM_Nab3p, RNA recognition motif in yeast nuclear polyadenylated RNA-binding protein 3 (Nab3p) and similar proteins | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 8e-04
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 153 KIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++F+GNLP + K + F +G + ++L KN +GFV +D P + +A+
Sbjct: 1 RLFIGNLPTKRVSKEDLFRIFSTYGELAQIVL--------KN-AYGFVQFDSPESCANAI 51
Query: 212 KAVEFDGVEFHGRVL 226
+ G GR L
Sbjct: 52 NCEQ--GKMIRGRKL 64
|
This subfamily corresponds to the RRM of Nab3p, an acidic nuclear polyadenylated RNA-binding protein encoded by Saccharomyces cerevisiae NAB3 gene that is essential for cell viability. Nab3p is predominantly localized within the nucleoplasm and essential for growth in yeast. It may play an important role in packaging pre-mRNAs into ribonucleoprotein structures amenable to efficient nuclear RNA processing. Nab3p contains an N-terminal aspartic/glutamic acid-rich region, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal region rich in glutamine and proline residues. . Length = 71 |
| >gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP) | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 36/126 (28%), Positives = 47/126 (37%), Gaps = 20/126 (15%)
Query: 10 PHFPHTPATLLT----HKPHHPTT----TSLSFSLKQPP-------PPSPTPPEPHNLHR 54
P++P+ A L H+P PT S SLK PP PPS P NL
Sbjct: 229 PYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPPECLLTPLPPSALPSADDNLKT 288
Query: 55 PPKSS-RPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPA 113
P + RP +P + N+ P PP L+P PP PP
Sbjct: 289 PAECLLRP----LPPSADDNIKECPLALKPPPPLPPSVDDNLKECLLAPLPPSALPPSVD 344
Query: 114 EQLQEP 119
+ L+ P
Sbjct: 345 DNLKTP 350
|
This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans. Length = 350 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 9e-04
Identities = 26/137 (18%), Positives = 36/137 (26%), Gaps = 14/137 (10%)
Query: 6 SLSAPHFPHTPATLLTHKPHHPTTTSLSFS------LKQPPPPSPTPPEPHNLHRPPKS- 58
P P P + L S +++ PP +P RPP
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885
Query: 59 ------SRPTRS-KIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPP 111
SR T S +P + + P P PP P PP P
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945
Query: 112 PAEQLQEPQSQGNDEIP 128
+ + G P
Sbjct: 2946 TTDPAGAGEPSGAVPQP 2962
|
Length = 3151 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570
V YN++I +C G ++ A+ + KEM+++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 613 TFNALILGLVEKRQMEKAIEILDEMTLAGI 642
T+N+LI G + ++E+A+E+ EM G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 21/108 (19%), Positives = 30/108 (27%), Gaps = 5/108 (4%)
Query: 39 PPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPP-SHSLSAKLRLS 97
PT P P P + + + + A P+PP S
Sbjct: 63 DRFEPPTGPPPGPGTEAPANESRSTPTWSLST-LAPASPAREGSPTPPGPSSPDPPPPTP 121
Query: 98 SKLSPPPPPPP---PPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATS 142
SPPP P P P + A + +S A+S
Sbjct: 122 PPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASS 169
|
Length = 1352 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 7/137 (5%)
Query: 9 APHFPHTPATLLT-----HKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTR 63
P P TL T + P++ S P P P + P S P
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314
Query: 64 SK--IPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQS 121
S + S+++ + S S S PPPP P P ++ + ++
Sbjct: 315 SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRA 374
Query: 122 QGNDEIPDAENRSPSSS 138
+ +
Sbjct: 375 PSSPAASAGRPTRRRAR 391
|
Length = 1352 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 26/114 (22%), Positives = 35/114 (30%), Gaps = 28/114 (24%)
Query: 6 SLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSK 65
L +P +L P HP TT + PP P + P R
Sbjct: 227 PLPSPQPVRHSPGILGPSPLHPHTT------RPSPPRPAFSRSPSSPLSPLPRPSTRRGL 280
Query: 66 IPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEP 119
+P NP L ++ H+ PPP PP P L+ P
Sbjct: 281 LP-NP--RLPRASRGHL-------------------PPPTSSAPPRPNGGLRRP 312
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 1/108 (0%)
Query: 38 QPPPPSPTPPEPHNLH-RPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRL 96
+ P P P E +S + +P + + P PS +
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 97 SSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQE 144
S S PP P P+S N P P +
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPP 253
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 16 PATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNP----- 70
P HKP T S + P P EP RP + RPTR K PK P
Sbjct: 561 PGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDI 620
Query: 71 ---FKNLLNSATTHVPSPPSHSLSAKLRLSSKL--SPPPPPPPPPP 111
K + + P PP S + K+ SP PP P PP
Sbjct: 621 PKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666
|
Length = 943 |
| >gnl|CDD|240807 cd12361, RRM1_2_CELF1-6_like, RNA recognition motif 1 and 2 in CELF/Bruno-like family of RNA binding proteins and plant flowering time control protein FCA | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.001
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+FVG LP + V F ++G I+ V +I+ + ++ G FV + ++ + A K
Sbjct: 1 KLFVGQLPKTATEEDVRALFEEYGNIEEVTIIRD-KDTGQSKGCAFVKF---SSREEAQK 56
Query: 213 AVE 215
A+E
Sbjct: 57 AIE 59
|
This subfamily corresponds to the RRM1 and RRM2 domains of the CUGBP1 and ETR-3-like factors (CELF) as well as plant flowering time control protein FCA. CELF, also termed BRUNOL (Bruno-like) proteins, is a family of structurally related RNA-binding proteins involved in regulation of pre-mRNA splicing in the nucleus, and control of mRNA translation and deadenylation in the cytoplasm. The family contains six members: CELF-1 (also known as BRUNOL-2, CUG-BP1, NAPOR, EDEN-BP), CELF-2 (also known as BRUNOL-3, ETR-3, CUG-BP2, NAPOR-2), CELF-3 (also known as BRUNOL-1, TNRC4, ETR-1, CAGH4, ER DA4), CELF-4 (BRUNOL-4), CELF-5 (BRUNOL-5) and CELF-6 (BRUNOL-6). They all contain three highly conserved RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains): two consecutive RRMs (RRM1 and RRM2) situated in the N-terminal region followed by a linker region and the third RRM (RRM3) close to the C-terminus of the protein. The low sequence conservation of the linker region is highly suggestive of a large variety in the co-factors that associate with the various CELF family members. Based on both, sequence similarity and function, the CELF family can be divided into two subfamilies, the first containing CELFs 1 and 2, and the second containing CELFs 3, 4, 5, and 6. The different CELF proteins may act through different sites on at least some substrates. Furthermore, CELF proteins may interact with each other in varying combinations to influence alternative splicing in different contexts. This subfamily also includes plant flowering time control protein FCA that functions in the posttranscriptional regulation of transcripts involved in the flowering process. FCA contains two RRMs, and a WW protein interaction domain. . Length = 77 |
| >gnl|CDD|240768 cd12322, RRM2_TDP43, RNA recognition motif 2 in TAR DNA-binding protein 43 (TDP-43) and similar proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY-DGPAAEKSAM 211
K+FVG L + + + ++F QFG + +V + K + F FV + D A+
Sbjct: 2 KVFVGRLTEDMTEEDLRQYFSQFGEVTDVYIPKPFR------AFAFVTFADPEVAQSLCG 55
Query: 212 KAVEFDGVEFH 222
+ GV H
Sbjct: 56 EDHIIKGVSVH 66
|
This subfamily corresponds to the RRM2 of TDP-43 (also termed TARDBP), a ubiquitously expressed pathogenic protein whose normal function and abnormal aggregation are directly linked to the genetic disease cystic fibrosis, and two neurodegenerative disorders: frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). TDP-43 binds both DNA and RNA, and has been implicated in transcriptional repression, pre-mRNA splicing and translational regulation. TDP-43 is a dimeric protein with two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal glycine-rich domain. The RRMs are responsible for DNA and RNA binding; they bind to TAR DNA and RNA sequences with UG-repeats. The glycine-rich domain can interact with the hnRNP family proteins to form the hnRNP-rich complex involved in splicing inhibition. It is also essential for the cystic fibrosis transmembrane conductance regulator (CFTR) exon 9-skipping activity. . Length = 71 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 29/146 (19%), Positives = 44/146 (30%), Gaps = 16/146 (10%)
Query: 10 PHFPHTPATLLTHKPHHPTTTSLSFSLK--------QPPPPSPT---PPEPHNLHRPPKS 58
T + H P+ P+ T + L QPPP +PT PP +
Sbjct: 659 ITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPA 718
Query: 59 SRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQE 118
+ R++ P A + P + + R P P PPA
Sbjct: 719 AATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR-----PPAAAPGRARPPAAAPGA 773
Query: 119 PQSQGNDEIPDAENRSPSSSLATSQE 144
P Q + P A + P +
Sbjct: 774 PTPQPPPQAPPAPQQRPRGAPTPQPP 799
|
Length = 991 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++V NL + + + E F +FG I + ++K + ++ GF FV ++ A++
Sbjct: 181 LYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSG--RSRGFAFVNFEKHEDAAKAVEE 238
Query: 214 VEFDGVEFHGRVLTVKLDDGR---RLKNKAEVRA 244
+ +G + KL GR R + +AE+R
Sbjct: 239 M--NGKKIGLAKEGKKLYVGRAQKRAEREAELRR 270
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 168 VMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVE-FDGVEFHGRVL 226
+ + F FG ++ + L +K GF FV + ++A KAV+ +GV F GR L
Sbjct: 1 LYKLFSPFGNVEKIKL------LKKKPGFAFVEFSTE---EAAEKAVQYLNGVLFGGRPL 51
Query: 227 TVKL 230
V
Sbjct: 52 RVDY 55
|
(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56 |
| >gnl|CDD|240909 cd12463, RRM_G3BP1, RNA recognition motif found in ras GTPase-activating protein-binding protein 1 (G3BP1) and similar proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.001
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
++FVGNLP+ + K + EFF+Q+G NV+ ++ N+ K FGFV++D
Sbjct: 5 QLFVGNLPHDVDKSELKEFFQQYG---NVVELR-INSGGKLPNFGFVVFDDS 52
|
This subgroup corresponds to the RRM of G3BP1, also termed ATP-dependent DNA helicase VIII (DH VIII), or GAP SH3 domain-binding protein 1, which has been identified as a phosphorylation-dependent endoribonuclease that interacts with the SH3 domain of RasGAP, a multi-functional protein controlling Ras activity. The acidic RasGAP binding domain of G3BP1 harbors an arsenite-regulated phosphorylation site and dominantly inhibits stress granule (SG) formation. G3BP1 also contains an N-terminal nuclear transfer factor 2 (NTF2)-like domain, an RNA recognition motif (RRM domain), and an Arg-Gly-rich region (RGG-rich region, or arginine methylation motif). The RRM domain and RGG-rich region are canonically associated with RNA binding. G3BP1 co-immunoprecipitates with mRNAs. It binds to and cleaves the 3'-untranslated region (3'-UTR) of the c-myc mRNA in a phosphorylation-dependent manner. Thus, G3BP1 may play a role in coupling extra-cellular stimuli to mRNA stability. It has been shown that G3BP1 is a novel Dishevelled-associated protein that is methylated upon Wnt3a stimulation and that arginine methylation of G3BP1 regulates both Ctnnb1 mRNA and canonical Wnt/beta-catenin signaling. Furthermore, G3BP1 can be associated with the 3'-UTR of beta-F1 mRNA in cytoplasmic RNA-granules, demonstrating that G3BP1 may specifically repress the translation of the transcript. Length = 80 |
| >gnl|CDD|217197 pfam02711, Pap_E4, E4 protein | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 96 LSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEET 146
L + +PP PPPPPPP A + + + +D + S E
Sbjct: 16 LHTYTTPPRPPPPPPPWAPKKRCRRRLESDSDSSSTTSPSSPPTPQPTTEC 66
|
This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but neither the function of E4 or E1--E4 is known. Length = 95 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 641 GISPNEHTYTTIMHGYASLGDTGKAFEYF 669
G+ P+ TY T++ G G +A E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 34/158 (21%), Positives = 50/158 (31%), Gaps = 28/158 (17%)
Query: 9 APHFPHTPA-TLLTHKPH----HPTTTSLSFSLKQ--------PPPPSP----------T 45
AP P A +L +P HP + L++ PPPP P +
Sbjct: 2508 APPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRS 2567
Query: 46 PPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPP 105
P P RP + + +R++ P P + SA P S L P
Sbjct: 2568 VPPPRPAPRPSEPAVTSRARRPDAPPQ----SARPRAPVDDRGDPRGPAP-PSPLPPDTH 2622
Query: 106 PPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQ 143
P PPPP+ + + P A +
Sbjct: 2623 APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGR 2660
|
Length = 3151 |
| >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 8/114 (7%)
Query: 10 PHFPHTPATL--LTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIP 67
P H P+ + L+ KP P ++P P P RP P IP
Sbjct: 563 PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPK-RPRSAQRPTRPKSPKLPELLDIP 621
Query: 68 KNPFKNLLNSATTHVPSP-----PSHSLSAKLRLSSKLSPPPPPPPPPPPAEQL 116
K+P + + P P P K+ S K P PP P E+
Sbjct: 622 KSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKF 675
|
Length = 943 |
| >gnl|CDD|241037 cd12593, RRM_RBM11, RNA recognition motif in vertebrate RNA-binding protein 11 (RBM11) | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNL +++ ++ E F Q GP+ V + K K+ FGFV + + A+
Sbjct: 4 LFVGNLECRVREEILYELFLQAGPLTKVTICKDKEGKPKS--FGFVCFKHSESVPYAIAL 61
Query: 214 VEFDGVEFHGRVLTVK 229
+ +G+ +GR + V
Sbjct: 62 L--NGIRLYGRPIKVH 75
|
This subfamily corresponds to the RRM or RBM11, a novel tissue-specific splicing regulator that is selectively expressed in brain, cerebellum and testis, and to a lower extent in kidney. RBM11 is localized in the nucleoplasm and enriched in SRSF2-containing splicing speckles. It may play a role in the modulation of alternative splicing during neuron and germ cell differentiation. RBM11 contains an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a region lacking known homology at the C-terminus. The RRM of RBM11 is responsible for RNA binding, whereas the C-terminal region permits nuclear localization and homodimerization. . Length = 75 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 14/141 (9%)
Query: 7 LSAPHFPH-TPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSK 65
S P + + P P SP P + PP P S+
Sbjct: 45 DSTKQPPAPEQVAKHELADAPLQQVNAALP-PAPAPQSPQPDQQQQSQAPPSHQYP--SQ 101
Query: 66 IPKNPFKNLLNSATTHVPS---PPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQ 122
+P +++ T PPS + P P PP + Q+ Q Q
Sbjct: 102 LPPQQVQSVPQQPTPQQEPYYPPPSQPQPPP-------AQQPQAQQPQPPPQVPQQQQYQ 154
Query: 123 GNDEIPDAENRSPSSSLATSQ 143
+ P + P + + Q
Sbjct: 155 SPPQQPQYQQNPPPQAQSAPQ 175
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|241100 cd12656, RRM3_HuD, RNA recognition motif 3 in vertebrate Hu-antigen D (HuD) | Back alignment and domain information |
|---|
Score = 37.8 bits (87), Expect = 0.002
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IFV NL + ++ + F FG + NV +I+ +N K GFGFV +++AM
Sbjct: 6 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNT-NKCKGFGFVTMTN--YDEAAMAI 62
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLK 237
+G RVL V + K
Sbjct: 63 ASLNGYRLGDRVLQVSFKTNKTHK 86
|
This subgroup corresponds to the RRM3 of HuD, also termed ELAV-like protein 4 (ELAV-4), or paraneoplastic encephalomyelitis antigen HuD, one of the neuronal members of the Hu family. The neuronal Hu proteins play important roles in neuronal differentiation, plasticity and memory. HuD has been implicated in various aspects of neuronal function, such as the commitment and differentiation of neuronal precursors as well as synaptic remodeling in mature neurons. HuD also functions as an important regulator of mRNA expression in neurons by interacting with AU-rich RNA element (ARE) and stabilizing multiple transcripts. Moreover, HuD regulates the nuclear processing/stability of N-myc pre-mRNA in neuroblastoma cells. And it also regulates the neurite elongation and morphological differentiation. HuD specifically bound poly(A) RNA. Like other Hu proteins, HuD contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. . Length = 86 |
| >gnl|CDD|240837 cd12391, RRM1_SART3, RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV NL + + + + F + G I +V L+K Y K G+ +V + E+S +A
Sbjct: 2 VFVSNLDYSVPEDELRKLFSKCGEITDVRLVKNYKGKSK--GYAYVEF---ENEESVQEA 56
Query: 214 VEFDGVEFHGR 224
++ D GR
Sbjct: 57 LKLDRELIKGR 67
|
This subfamily corresponds to the RRM1 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72 |
| >gnl|CDD|240669 cd12223, RRM_SR140, RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG--FGFVIYDGPAAEKSAM 211
++VGNL + + ++ + F +FGP+ +V ++ E+ GFV + A + A+
Sbjct: 4 LYVGNLNPKVTEEVLCQEFGRFGPLASVKIMWPRTEEERRRNRNCGFVAFMNRADAERAL 63
Query: 212 KAVEFDGVEFHGRVLTV 228
E DG + G L +
Sbjct: 64 D--ELDGKDVMGYELKL 78
|
This subgroup corresponds to the RRM of SR140 (also termed U2 snRNP-associated SURP motif-containing protein orU2SURP, or 140 kDa Ser/Arg-rich domain protein) which is a putative splicing factor mainly found in higher eukaryotes. Although it is initially identified as one of the 17S U2 snRNP-associated proteins, the molecular and physiological function of SR140 remains unclear. SR140 contains an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a SWAP/SURP domain that is found in a number of pre-mRNA splicing factors in the middle region, and a C-terminal arginine/serine-rich domain (RS domain). Length = 84 |
| >gnl|CDD|240800 cd12354, RRM3_TIA1_like, RNA recognition motif 2 in granule-associated RNA binding proteins (p40-TIA-1 and TIAR), and yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++VGNLP+ + + + F FG I+ V + K +K G+ FV +D A +A+
Sbjct: 3 VYVGNLPHGLTEEELQRTFSPFGAIEEVRVFK-----DK--GYAFVRFDTHEAAATAI-- 53
Query: 214 VEFDGVEFHGRVL 226
V +G +G+ +
Sbjct: 54 VAVNGTSINGQTV 66
|
This subfamily corresponds to the RRM3 of TIA-1, TIAR, and PUB1. Nucleolysin TIA-1 isoform p40 (p40-TIA-1 or TIA-1) and nucleolysin TIA-1-related protein (TIAR) are granule-associated RNA binding proteins involved in inducing apoptosis in cytotoxic lymphocyte (CTL) target cells. They share high sequence similarity and are expressed in a wide variety of cell types. TIA-1 can be phosphorylated by a serine/threonine kinase that is activated during Fas-mediated apoptosis.TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. Both TIA-1 and TIAR bind specifically to poly(A) but not to poly(C) homopolymers. They are composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. TIA-1 and TIAR interact with RNAs containing short stretches of uridylates and their RRM2 can mediate the specific binding to uridylate-rich RNAs. The C-terminal auxiliary domain may be responsible for interacting with other proteins. In addition, TIA-1 and TIAR share a potential serine protease-cleavage site (Phe-Val-Arg) localized at the junction between their RNA binding domains and their C-terminal auxiliary domains. This subfamily also includes a yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1, termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein, which has been identified as both a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP). It may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. PUB1 is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA); however, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RRMs, and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 73 |
| >gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 102 PPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSP 135
PPPPPPP PP E+ + Q + + + ++ P
Sbjct: 274 PPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIP 307
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.003
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 400 NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDI-YHMMMDGY 446
+ + Y +I C+ +E A L +M++ GI P Y +++DG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI-KPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|240713 cd12267, RRM_YRA1_MLO3, RNA recognition motif in yeast RNA annealing protein YRA1 (Yra1p), yeast mRNA export protein mlo3 and similar proteins | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 153 KIFVGNLPNWIKKHLVMEFF-RQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
K+ V NLP + + + E+F Q GPIK V+L YN K+ G + + A
Sbjct: 1 KVIVSNLPKDVTEAQIREYFVSQIGPIKRVLLS--YNEGGKSTGIANITFKRA---GDAT 55
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLK 237
KA + +F+GR D R++K
Sbjct: 56 KAYD----KFNGR----IDDGNRKMK 73
|
This subfamily corresponds to the RRM of Yra1p and mlo3. Yra1p is an essential nuclear RNA-binding protein encoded by Saccharomyces cerevisiae YRA1 gene. It belongs to the evolutionarily conserved REF (RNA and export factor binding proteins) family of hnRNP-like proteins. Yra1p possesses potent RNA annealing activity and interacts with a number of proteins involved in nuclear transport and RNA processing. It binds to the mRNA export factor Mex67p/TAP and couples transcription to export in yeast. Yra1p is associated with Pse1p and Kap123p, two members of the beta-importin family, further mediating transport of Yra1p into the nucleus. In addition, the co-transcriptional loading of Yra1p is required for autoregulation. Yra1p consists of two highly conserved N- and C-terminal boxes and a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). This subfamily includes RNA-annealing protein mlo3, also termed mRNA export protein mlo3, which has been identified in fission yeast as a protein that causes defects in chromosome segregation when overexpressed. It shows high sequence similarity with Yra1p. . Length = 77 |
| >gnl|CDD|241115 cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.003
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGN+P + + + F + GP+ + L+ K G+GF Y SAM+
Sbjct: 1 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET-GKPKGYGFCEYKDQETALSAMR- 58
Query: 214 VEFDGVEFHGRVLTV 228
+G E +GR L V
Sbjct: 59 -NLNGYELNGRQLRV 72
|
This subgroup corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. . Length = 75 |
| >gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.003
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 33/81 (40%)
Query: 37 KQPPPPSPT--PPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKL 94
K PPPP PP P+ PP + SPP
Sbjct: 4 KSPPPPVKQYSPPPPYYYKSPPPPVKS------------------PVYKSPPP------- 38
Query: 95 RLSSKLSPPPPPP----PPPP 111
SPPPP PPPP
Sbjct: 39 --PVYKSPPPPKYVYKSPPPP 57
|
Length = 57 |
| >gnl|CDD|241097 cd12653, RRM3_HuR, RNA recognition motif 3 in vertebrate Hu-antigen R (HuR) | Back alignment and domain information |
|---|
Score = 37.4 bits (86), Expect = 0.003
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IF+ NL + ++ + F FG + NV +I+ +N K GFGFV E++AM
Sbjct: 4 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNT-NKCKGFGFVTMTN--YEEAAMAI 60
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLK 237
+G ++L V + K
Sbjct: 61 ASLNGYRLGDKILQVSFKTSKSHK 84
|
This subgroup corresponds to the RRM3 of HuR, also termed ELAV-like protein 1 (ELAV-1), the ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. HuR has an anti-apoptotic function during early cell stress response. It binds to mRNAs and enhances the expression of several anti-apoptotic proteins, such as p21waf1, p53, and prothymosin alpha. HuR also has pro-apoptotic function by promoting apoptosis when cell death is unavoidable. Furthermore, HuR may be important in muscle differentiation, adipogenesis, suppression of inflammatory response and modulation of gene expression in response to chronic ethanol exposure and amino acid starvation. Like other Hu proteins, HuR contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an AU-rich RNA element (ARE). RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. . Length = 84 |
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 36 LKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLR 95
LK P PSPT P + P SS + +P A P LS
Sbjct: 447 LKPPTSPSPTAPTGVS---PSVSSTSSVPAVPDTAPATAATDAAAP-PPANMRPLSPYAV 502
Query: 96 LSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQ 150
P P P P +E+ N +P ++LA Q + +
Sbjct: 503 YDDLKPPTSPSPAAPVGKV-----APSSTNEVVKVGNSAPPTALADEQHHAQPKP 552
|
Length = 576 |
| >gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription factor N terminal domain | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 34 FSLKQPPPPSPTPPEPHN---LHRPPKSSRPTRSKIPKNPFKNLLNSATTHVP-SPPSHS 89
S +PP P TP P N R + S P + P +P L N + P S P S
Sbjct: 127 ASGFKPPTPPSTPCSPVNPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSS 186
Query: 90 LSAKLRLSSKLSPPPPPPPPPP 111
++ R +LS P P PPPP
Sbjct: 187 YPSEHRFQRQLSEPCLPFPPPP 208
|
The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites. Length = 336 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGL 677
TY +++ GY G +A E F +++ +G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|221509 pfam12287, Caprin-1_C, Cytoplasmic activation/proliferation-associated protein-1 C term | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 12/157 (7%)
Query: 13 PHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKN--P 70
HT P P S+S + +Q P S P S S I N P
Sbjct: 86 SHTAEPRPQTDPIDPIQASMSLNSEQTPTSSSLPAASQPQVFQTGSKPLHSSGINVNAAP 145
Query: 71 FKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPP---PPPPPPPAEQLQEPQSQGNDEI 127
F+++ + P PP + + L+ ++ P P EQ + Q Q +
Sbjct: 146 FQSMQTVFNMNAPVPPVNEPES-LKQQNQYQASYNQGFSSQPQHPVEQTELQQEQLQTVV 204
Query: 128 ------PDAENRSPSSSLATSQEETEFRQEGKIFVGN 158
+++ S SQ+ F ++G+ F +
Sbjct: 205 GSFHSQDQQAHQAASGHQQPSQQGPGFGRQGQSFYNS 241
|
This family of proteins is found in eukaryotes. Proteins in this family are typically between 343 and 708 amino acids in length. This family is the C terminal region of caprin-1. Caprin-1 is a protein involved in regulating cellular proliferation. In mutated phenotypes, the G1 phase of the cell cycle is greatly lengthened, impairing normal proliferation. The C terminal region of caprin-1 contains RGG motifs which are characteristic of RNA binding domains. It is possible that caprin-1 functions through an RNA binding mechanism. Length = 319 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 779 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PLN03134 | 144 | glycine-rich RNA-binding protein 4; Provisional | 99.73 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| KOG0122 | 270 | consensus Translation initiation factor 3, subunit | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.67 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.66 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.65 | |
| KOG0125 | 376 | consensus Ataxin 2-binding protein (RRM superfamil | 99.65 | |
| KOG0149 | 247 | consensus Predicted RNA-binding protein SEB4 (RRM | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.59 | |
| KOG0113 | 335 | consensus U1 small nuclear ribonucleoprotein (RRM | 99.59 | |
| KOG0121 | 153 | consensus Nuclear cap-binding protein complex, sub | 99.59 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| PF00076 | 70 | RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or | 99.56 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 99.54 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.54 | |
| PLN03213 | 759 | repressor of silencing 3; Provisional | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.52 | |
| KOG0107 | 195 | consensus Alternative splicing factor SRp20/9G8 (R | 99.52 | |
| KOG0126 | 219 | consensus Predicted RNA-binding protein (RRM super | 99.52 | |
| KOG4207 | 256 | consensus Predicted splicing factor, SR protein su | 99.52 | |
| PLN03120 | 260 | nucleic acid binding protein; Provisional | 99.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| KOG0111 | 298 | consensus Cyclophilin-type peptidyl-prolyl cis-tra | 99.5 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.5 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.5 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 99.49 | |
| PF14259 | 70 | RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or | 99.49 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.46 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 99.46 | |
| KOG0130 | 170 | consensus RNA-binding protein RBM8/Tsunagi (RRM su | 99.44 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.43 | |
| PLN03121 | 243 | nucleic acid binding protein; Provisional | 99.42 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.42 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 99.42 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.41 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.41 | |
| KOG0114 | 124 | consensus Predicted RNA-binding protein (RRM super | 99.4 | |
| KOG0226 | 290 | consensus RNA-binding proteins [General function p | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.4 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 99.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.39 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 99.36 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 99.36 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 99.35 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.34 | |
| KOG0108 | 435 | consensus mRNA cleavage and polyadenylation factor | 99.34 | |
| smart00362 | 72 | RRM_2 RNA recognition motif. | 99.34 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 99.33 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 99.31 | |
| smart00360 | 71 | RRM RNA recognition motif. | 99.3 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 99.3 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 99.3 | |
| smart00361 | 70 | RRM_1 RNA recognition motif. | 99.29 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.27 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.26 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 99.25 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 99.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.23 | |
| PF13893 | 56 | RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or | 99.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.22 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 99.21 | |
| cd00590 | 74 | RRM RRM (RNA recognition motif), also known as RBD | 99.21 | |
| KOG0415 | 479 | consensus Predicted peptidyl prolyl cis-trans isom | 99.2 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| COG0724 | 306 | RNA-binding proteins (RRM domain) [General functio | 99.18 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 99.17 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.17 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.14 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 99.14 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.13 | |
| KOG0116 | 419 | consensus RasGAP SH3 binding protein rasputin, con | 99.12 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.12 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 99.11 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 99.11 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 99.1 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.08 | |
| KOG4208 | 214 | consensus Nucleolar RNA-binding protein NIFK [Gene | 99.08 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.08 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.07 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.04 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 99.03 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.03 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 99.02 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 99.01 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.01 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.98 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.97 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 98.97 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 98.96 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.95 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.95 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 98.92 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.92 | |
| KOG0153 | 377 | consensus Predicted RNA-binding protein (RRM super | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 98.81 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 98.81 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.81 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.78 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.77 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 98.77 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.71 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 98.7 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.7 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.69 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 98.69 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.64 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 98.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.59 | |
| KOG4209 | 231 | consensus Splicing factor RNPS1, SR protein superf | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.57 | |
| KOG0533 | 243 | consensus RRM motif-containing protein [RNA proces | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| KOG4660 | 549 | consensus Protein Mei2, essential for commitment t | 98.48 | |
| KOG0151 | 877 | consensus Predicted splicing regulator, contains R | 98.47 | |
| KOG4454 | 267 | consensus RNA binding protein (RRM superfamily) [G | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.44 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.19 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 98.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.17 | |
| PF04059 | 97 | RRM_2: RNA recognition motif 2; InterPro: IPR00720 | 98.16 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.15 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.14 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 98.14 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.13 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 98.12 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 98.07 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.04 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.01 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 97.97 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.96 | |
| PF08777 | 105 | RRM_3: RNA binding motif; InterPro: IPR014886 This | 97.9 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.9 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 97.89 | |
| KOG3671 | 569 | consensus Actin regulatory protein (Wiskott-Aldric | 97.87 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.86 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.83 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.83 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.83 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.82 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.8 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.8 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 97.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.79 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.76 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.75 | |
| PF11608 | 90 | Limkain-b1: Limkain b1; InterPro: IPR024582 This e | 97.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.74 | |
| KOG1995 | 351 | consensus Conserved Zn-finger protein [General fun | 97.74 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.73 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.73 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.73 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.72 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.72 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.72 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.71 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.68 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 97.67 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.67 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 97.64 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.64 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.57 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.55 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.54 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.53 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.52 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 97.52 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.5 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.47 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.46 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.45 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.44 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.43 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 97.42 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.41 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.41 | |
| KOG4210 | 285 | consensus Nuclear localization sequence binding pr | 97.4 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.38 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.35 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.33 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.33 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.24 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.16 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.13 | |
| KOG3152 | 278 | consensus TBP-binding protein, activator of basal | 97.12 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.11 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.1 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.03 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.01 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 97.0 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.94 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.93 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.93 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.92 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.88 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 96.88 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 96.88 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.85 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 96.84 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.83 | |
| PF05172 | 100 | Nup35_RRM: Nup53/35/40-type RNA recognition motif; | 96.81 | |
| KOG1923 | 830 | consensus Rac1 GTPase effector FRL [Signal transdu | 96.79 | |
| KOG1996 | 378 | consensus mRNA splicing factor [RNA processing and | 96.75 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.74 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 96.72 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 96.71 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 96.7 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 96.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.67 | |
| KOG2253 | 668 | consensus U1 snRNP complex, subunit SNU71 and rela | 96.66 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.63 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.63 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.61 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.6 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.58 | |
| PF14605 | 53 | Nup35_RRM_2: Nup53/35/40-type RNA recognition moti | 96.58 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.56 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.56 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.5 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.5 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.49 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.48 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.45 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.44 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.42 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.42 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.39 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.35 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 96.3 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.28 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.27 | |
| PF08952 | 146 | DUF1866: Domain of unknown function (DUF1866) ; In | 96.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.21 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.19 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 96.19 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.14 | |
| KOG0115 | 275 | consensus RNA-binding protein p54nrb (RRM superfam | 96.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.12 | |
| KOG2193 | 584 | consensus IGF-II mRNA-binding protein IMP, contain | 96.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.09 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.05 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.04 | |
| KOG2202 | 260 | consensus U2 snRNP splicing factor, small subunit, | 95.94 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.93 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.89 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.88 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.86 | |
| KOG1855 | 484 | consensus Predicted RNA-binding protein [General f | 95.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.69 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 95.68 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.68 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.68 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.67 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.58 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.56 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.55 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.5 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.44 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.43 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.41 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.38 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.37 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.3 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.17 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 95.14 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.11 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.07 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.03 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.01 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.97 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.89 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 94.85 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 94.8 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.78 | |
| KOG0112 | 975 | consensus Large RNA-binding protein (RRM superfami | 94.73 | |
| KOG2068 | 327 | consensus MOT2 transcription factor [Transcription | 94.72 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.67 | |
| PRK15319 | 2039 | AIDA autotransporter-like protein ShdA; Provisiona | 94.61 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.46 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.38 | |
| KOG2416 | 718 | consensus Acinus (induces apoptotic chromatin cond | 94.37 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 94.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.2 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 94.1 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.08 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.97 | |
| PF08675 | 87 | RNA_bind: RNA binding domain; InterPro: IPR014789 | 93.75 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.73 | |
| KOG0112 | 975 | consensus Large RNA-binding protein (RRM superfami | 93.72 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.68 | |
| PF04847 | 184 | Calcipressin: Calcipressin; InterPro: IPR006931 Ca | 93.59 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 93.46 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 93.32 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.11 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.1 | |
| KOG4285 | 350 | consensus Mitotic phosphoprotein [Cell cycle contr | 93.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.96 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.94 | |
| KOG2591 | 684 | consensus c-Mpl binding protein, contains La domai | 92.71 | |
| PF03880 | 74 | DbpA: DbpA RNA binding domain ; InterPro: IPR00558 | 92.58 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 92.57 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.51 | |
| KOG4574 | 1007 | consensus RNA-binding protein (contains RRM and Pu | 92.32 | |
| PRK15313 | 955 | autotransport protein MisL; Provisional | 92.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.2 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.19 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 92.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.95 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.94 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.85 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 91.7 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.6 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 91.56 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.56 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.51 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.33 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.31 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.29 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.28 | |
| PF07576 | 110 | BRAP2: BRCA1-associated protein 2; InterPro: IPR01 | 91.17 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.07 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.04 | |
| PF15023 | 166 | DUF4523: Protein of unknown function (DUF4523) | 90.81 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.76 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.76 | |
| PF15449 | 1287 | Retinal: Retinal protein | 90.66 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.64 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.41 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 90.34 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 90.34 | |
| KOG0162 | 1106 | consensus Myosin class I heavy chain [Cytoskeleton | 90.34 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 90.34 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 90.27 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.19 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.09 | |
| PF10309 | 62 | DUF2414: Protein of unknown function (DUF2414); In | 89.95 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 89.91 | |
| KOG2135 | 526 | consensus Proteins containing the RNA recognition | 89.83 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 89.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.5 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.39 | |
| KOG0162 | 1106 | consensus Myosin class I heavy chain [Cytoskeleton | 89.22 | |
| KOG4676 | 479 | consensus Splicing factor, arginine/serine-rich [R | 89.0 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.77 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.73 | |
| KOG0559 | 457 | consensus Dihydrolipoamide succinyltransferase (2- | 88.7 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 88.63 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.56 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.48 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 88.44 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.44 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 88.13 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.0 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.78 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 87.76 | |
| KOG0226 | 290 | consensus RNA-binding proteins [General function p | 87.56 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.35 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 87.02 | |
| PF07174 | 297 | FAP: Fibronectin-attachment protein (FAP); InterPr | 86.82 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 86.61 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.58 | |
| PF03467 | 176 | Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 | 86.36 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-67 Score=587.74 Aligned_cols=503 Identities=19% Similarity=0.317 Sum_probs=469.9
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
+.++|+. ++|.++|+++...+...|+ ...++.++..|.+.|.+++|+.+|+.|..
T Consensus 380 l~r~G~l---------~eAl~Lfd~M~~~gvv~~~-------------~v~~~~li~~~~~~g~~~eAl~lf~~M~~--- 434 (1060)
T PLN03218 380 LLRDGRI---------KDCIDLLEDMEKRGLLDMD-------------KIYHAKFFKACKKQRAVKEAFRFAKLIRN--- 434 (1060)
T ss_pred HHHCcCH---------HHHHHHHHHHHhCCCCCch-------------HHHHHHHHHHHHHCCCHHHHHHHHHHcCC---
Confidence 5566777 8999999999888766564 44577889999999999999999999864
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|..+|..+|+.+
T Consensus 435 -pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 -PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred -CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHHcC
Q 004006 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE--CGFSPSIISYGCLINLYTKIG 485 (779)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g 485 (779)
|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 578999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004006 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (779)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (779)
++++|.++|+.|.+.|+.++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (779)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 645 (779)
+|.+.|..|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cC-------------------ChHHHHH
Q 004006 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK----SG-------------------RMQSALA 702 (779)
Q Consensus 646 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~ 702 (779)
..||+.++.+|++.|++++|.++|.+|.+.|+.||..+|++|+..|.+ ++ ..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999876542 21 2367999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhhc
Q 004006 703 VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEAK 778 (779)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~ 778 (779)
+|++|.+.|+.||..+|+.++.++++.+....+..+++.|...+..++..+|++||++|.+. .++|..+|++|.
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 99999999999999999999988888999999999999998888899999999999998432 368999999985
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=574.30 Aligned_cols=481 Identities=17% Similarity=0.265 Sum_probs=461.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (779)
++...|..+++.|++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4667888999999999999999999999999986 45777888999999999999999999999974 799999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
+.+|++.|++++|.++|++|.+.|..+|..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS--SGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (779)
++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|+.||.+|++.|++++|+++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 610 (779)
.|.+.|+.++..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCC
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR----R-------------------GDVWEAADLMQQMKQEGV 747 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g~ 747 (779)
|++.|++++|.+++++|.+.|+.||..+|++|+..|.+ . +..++|..+|++|++.|+
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999876432 1 234689999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHhHhhhc
Q 004006 748 QPDVHTYTSFINACKCSKSNQRNGRSWSEAK 778 (779)
Q Consensus 748 ~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~ 778 (779)
.||..||+.++.++.+.+..+.+.+++++|.
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 9999999999988888899999999998874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=581.01 Aligned_cols=510 Identities=20% Similarity=0.297 Sum_probs=299.3
Q ss_pred HHhhhc--ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhh-----------------CCCCHHHHHHH
Q 004006 242 VRARWV--AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERI-----------------KKPSRREFGLM 302 (779)
Q Consensus 242 ~~~~~~--~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l 302 (779)
..+.+| |.++|+. +.|.++|+++.+.|...|+.++.+|.+. -.||..+|+.+
T Consensus 123 ~~n~li~~~~~~g~~---------~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 123 LGNAMLSMFVRFGEL---------VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred HHHHHHHHHHhCCCh---------HHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 345566 8999998 8999999999888888888887776432 24666666655
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
+++|+..+++..+.+++..|.+.|+.+|..+||.||.+|++.|++++|.++|++|.+ +|..+|++++.+|++.|++
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGEC 269 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCH
Confidence 555555555555555555555555555555555555555555555555555555532 3445555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
++|+++|++|.+.|..||..+|+.++.+|++.|+.+.|.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004006 463 KECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (779)
Q Consensus 463 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (779)
.. +|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.++..
T Consensus 350 ~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 350 ET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred CC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 32 34445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------------------------------CCCCCcccHHHHHHHHHhcCCH
Q 004006 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKE------------------------------RHRPTSRTFMPIIHGFARAGEM 592 (779)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~~~~ 592 (779)
+|+.|+.+|++.|++++|.++|++|.+. +..||..+|+.++.+|++.|++
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 5555555555555555555555444321 2444444444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKL 672 (779)
Q Consensus 593 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 672 (779)
+.+.+++..+.+.|+.++..++|+||.+|+++|++++|.++|+.+ .+|..+|+.||.+|++.|+.++|+++|++|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444455555555555666666666666666554 356667777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004006 673 RNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS-AQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV 751 (779)
Q Consensus 673 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 751 (779)
.+.|+.||..||+.++.+|++.|++++|+++|+.|. +.++.|+..+|++|+++|++.|++++|.+++++|. ++||.
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~ 657 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH
Confidence 777777777777777777777777777777777776 45667777777777777777777777777777662 56777
Q ss_pred HHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 752 HTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 752 ~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
.+|++|+.+|..+|+.+.|....++
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7777777777777777666555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=581.08 Aligned_cols=505 Identities=16% Similarity=0.272 Sum_probs=429.8
Q ss_pred hhhhhHHHHHHHHHHhcCCc----cHHHHHH-------------HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 260 HKEREWHRREFRKAVETQPE----NWQAVVS-------------AFERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322 (779)
Q Consensus 260 ~~~~~~a~~~f~~~~~~~~~----~~~~~~~-------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (779)
.+..+.+..++..++...+. .++.+++ .|+++..++..+|+.+|.+|++.|++++|+++|++|
T Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M 178 (857)
T PLN03077 99 KRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM 178 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34447788888877765432 2344444 455667889999999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 004006 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI 402 (779)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (779)
...|+.||..+|+.+|++|.+.++++.+.+++..|.+.|+.+|..+++.|+.+|++.|++++|.++|++|.+ +|..
T Consensus 179 ~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~ 254 (857)
T PLN03077 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCI 254 (857)
T ss_pred HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 4889
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (779)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 482 (779)
+|+.+|.+|++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|+.+.+.+++..|.+.|+.||..+|+.|+.+|+
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004006 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (779)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 562 (779)
+.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 335 k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 335 SLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred hcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 99999999999999964 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI 642 (779)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 642 (779)
+++.|.+.|..++..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 999999999999999999999999999999999999999875 5788999999999999999999999999986 58
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH------------------------------HHHHHHHHH
Q 004006 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT------------------------------YEALLKACC 692 (779)
Q Consensus 643 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------------------------------~~~l~~~~~ 692 (779)
.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|..+ |+.+|.+|+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYV 565 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 99999999999888888888888888888877776555555 555555555
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCcchHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK-QEGVQPDVHTYTSFINACKCSKSNQRNG 771 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~l~~a~~~~g~~~~a~ 771 (779)
+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|.+.|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 555555555555555555555555555555555555555555555555555 3455555555555555555555555555
Q ss_pred HhHhhh
Q 004006 772 RSWSEA 777 (779)
Q Consensus 772 ~~~~~m 777 (779)
+++++|
T Consensus 646 ~~~~~m 651 (857)
T PLN03077 646 NFINKM 651 (857)
T ss_pred HHHHHC
Confidence 555554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-61 Score=539.28 Aligned_cols=467 Identities=18% Similarity=0.266 Sum_probs=446.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARG-IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+...|+.+|..|.+.|++++|+++|++|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.|+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34457888999999999999999999998864 67899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|++++|+++|++|.+.|..++..+|+.++.++...|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999964 5999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
.+.+++..+.+.|+.+|..+|+.|+++|++.|++++|.++|+.|.. +|..+|+.||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999964 589999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004006 534 RDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHT 613 (779)
Q Consensus 534 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 613 (779)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..+|..+++.|+.+|++.|++++|.++|++|.+ +|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965 68999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 004006 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN-EGLELDVFTYEALLKACC 692 (779)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 692 (779)
||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 699999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCcchHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSFINACKCSKSNQRNG 771 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l~~a~~~~g~~~~a~ 771 (779)
+.|++++|.+++++| .+.|+..+|++|+.+|...|+++.|.++++++.+ +.|+ ..+|..|++.|.+.|++++|.
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 999999999999876 4579999999999999999999999999999975 5564 679999999999999999999
Q ss_pred HhHhhhc
Q 004006 772 RSWSEAK 778 (779)
Q Consensus 772 ~~~~~m~ 778 (779)
+++++|+
T Consensus 549 ~v~~~m~ 555 (697)
T PLN03081 549 KVVETLK 555 (697)
T ss_pred HHHHHHH
Confidence 9999996
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-59 Score=521.87 Aligned_cols=463 Identities=19% Similarity=0.282 Sum_probs=439.2
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
|.++|+. +.|.++|..+....+. .|+..+|+.++.+|++.|+++.|.+++..|.+.|+
T Consensus 97 l~~~g~~---------~~Al~~f~~m~~~~~~-------------~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~ 154 (697)
T PLN03081 97 LVACGRH---------REALELFEILEAGCPF-------------TLPASTYDALVEACIALKSIRCVKAVYWHVESSGF 154 (697)
T ss_pred HHcCCCH---------HHHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 4566777 8999999988654321 26889999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
.||..+||.++.+|++.|++++|.++|++|.+ +|.++|++++.+|++.|++++|+++|++|.+.+..++..+|..+
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 99999999999999999999999999999964 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 004006 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (779)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 487 (779)
+.+|++.|+.+.+.+++..+.+.|+.+|..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.||.+|++.|+.
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999964 5899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004006 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (779)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (779)
++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH
Q 004006 568 QKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL-AGISPNE 646 (779)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~~~~ 646 (779)
.+ +|..+|+.||.+|++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 64 588999999999999999999999999999999999999999999999999999999999999986 6899999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
.+|+.++++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+.+ +.+..+|..|+++|
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y 538 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLY 538 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHH
Confidence 99999999999999999999998765 678999999999999999999999999999997654 44678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC
Q 004006 727 ARRGDVWEAADLMQQMKQEGVQ 748 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~ 748 (779)
++.|++++|.+++++|.+.|+.
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999975
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=321.71 Aligned_cols=510 Identities=14% Similarity=0.094 Sum_probs=439.2
Q ss_pred hcccCCccccccchhhhhhHHHHHHHHHHhcCCcc---HHHHH-------------HHHHhh---CCCCHHHHHHHHHHH
Q 004006 246 WVAGNNGEEFRSTWHKEREWHRREFRKAVETQPEN---WQAVV-------------SAFERI---KKPSRREFGLMVNYY 306 (779)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~---~~~~~-------------~~~~~~---~~~~~~~~~~li~~~ 306 (779)
.+|.+.|+. +.|.+.|.+++..+|.+ |..+. ..|... .......+..++..|
T Consensus 371 ~~~~~~g~~---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 371 EAYLALGDF---------EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred HHHHHCCCH---------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 347888888 99999999999887753 22221 222221 112344566678899
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 004006 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (779)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (779)
.+.|++++|+.+++.+.... ..+..+|+.+..+|...|++++|.+.|+++++.. +.+...+..++..+...|++++|+
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998764 4467889999999999999999999999998864 336778888999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
+.|+++....+. +..++..++.++.+.|+.++|..+++++.+.+ +.+...+..++..|...|++++|+.+++++.+..
T Consensus 520 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 520 QRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999987654 78899999999999999999999999998875 5567788889999999999999999999998754
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 467 FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN 546 (779)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 546 (779)
..+..+|..++.+|.+.|++++|+..|+++.+.. +.+...+..+..+|...|++++|..+|+++.+.... +...+..
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 674 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIG 674 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 3477889999999999999999999999998764 346778889999999999999999999999886543 6788999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 547 IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626 (779)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 626 (779)
++..+...|++++|.++++.+...... +...+..+...+.+.|++++|...|+.+...+. +..++..++.++.+.|+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCC
Confidence 999999999999999999999988654 677788888999999999999999999998654 44677788999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004006 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKE 706 (779)
Q Consensus 627 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (779)
+++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++.+.. +.+..+++.++..+...|+ .+|+.++++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 999999999998865 5678889999999999999999999999999886 5688899999999999999 889999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhhcC
Q 004006 707 MSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEAKC 779 (779)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~~ 779 (779)
+.+.. +.+..++..++.++...|++++|.++++++++.+.. |..++..++.++.+.|+.++|.++|++|.+
T Consensus 829 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 829 ALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 98864 567778899999999999999999999999997644 889999999999999999999999999854
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=313.51 Aligned_cols=507 Identities=14% Similarity=0.092 Sum_probs=416.1
Q ss_pred cccCCccccccchhhhhhHHHHHHHHHHhcCCcc---HHHHH-------------HHHHhh---CCCCHHHHHHHHHHHH
Q 004006 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPEN---WQAVV-------------SAFERI---KKPSRREFGLMVNYYA 307 (779)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~---~~~~~-------------~~~~~~---~~~~~~~~~~li~~~~ 307 (779)
+|.+.|+. +.|...|.+++..++.+ |..+. ..|++. ...+...+..+...+.
T Consensus 338 ~~~~~g~~---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 338 IQLRLGRV---------DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408 (899)
T ss_pred HHHHCCCH---------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 37888888 99999999998887753 22222 222222 2235566777788888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
..|++++|+..|+.+.+.... .......++..+.+.|++++|+.+++.+.... +.+..+|..++..|...|++++|+.
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888888888776432 34556667778888888888888888887753 4477888899999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
.|+++.+.... +...+..++..+...|++++|.++|+++.+.+ +.+..++..+...+...|+.++|..+|+++.+.+.
T Consensus 487 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 564 (899)
T TIGR02917 487 AFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564 (899)
T ss_pred HHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99998876544 66778888889999999999999999998865 55677888888999999999999999999887643
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (779)
.+...+..++..|.+.|++++|..+++.+.+.. ..+...|..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 565 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 641 (899)
T TIGR02917 565 -QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLL 641 (899)
T ss_pred -cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 356777888899999999999999999988754 446788899999999999999999999998876443 66778888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (779)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 627 (779)
..++.+.|++++|..+|+++...... +..++..++..+...|++++|..+++.+.+.... +...+..+...+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCH
Confidence 89999999999999999998887554 5678888889999999999999999999887543 677888888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 628 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
++|+..|+++...+ |+..++..++.++.+.|++++|.+.++++++.. +.+...+..++..|...|++++|..+|+++
T Consensus 720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999999998764 555777888899999999999999999998875 567888999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
.+.. +.+...++.+++++...|+ .+|+.+++++.+.. .-+..++..+..++...|++++|.++|+++
T Consensus 797 ~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 797 VKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8876 6788889999999999999 88999999998752 335667788999999999999999999876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-24 Score=252.88 Aligned_cols=513 Identities=11% Similarity=0.069 Sum_probs=348.2
Q ss_pred cccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHH-HHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004006 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVV-SAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR 325 (779)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (779)
++.+.|+. +.|.+.++++.+.+|.+..... ...-....++......+...+...|++++|++.|+.+.+.
T Consensus 71 ~~l~~g~~---------~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 71 LLLRQGDS---------DGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHhCCCH---------HHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC
Confidence 36777887 9999999999999997643211 1111223344445556667788888888888888888765
Q ss_pred CCCCCHh-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC------
Q 004006 326 GIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT------ 398 (779)
Q Consensus 326 ~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------ 398 (779)
+. ++.. ....+.......|+.++|++.++++++.. +-+...+..+...+...|++++|+..|+++......
T Consensus 142 ~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~ 219 (1157)
T PRK11447 142 AP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQ 219 (1157)
T ss_pred CC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHH
Confidence 32 2221 11112222234578888888888888764 336677778888888888888888888877543210
Q ss_pred --------------------------CChh---------------------hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 399 --------------------------LNAI---------------------IYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 399 --------------------------~~~~---------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
++.. ....+..++...|++++|+..|++..+.+
T Consensus 220 ~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~ 299 (1157)
T PRK11447 220 LWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN 299 (1157)
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 0000 00012445667788888888888888764
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhH------------HHHHHHHHHcCCHHHHHHHHHHHH
Q 004006 432 IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISY------------GCLINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~ 498 (779)
+.+..++..+...|.+.|++++|+..|++..+..... ....| ..+...+.+.|++++|+..|+++.
T Consensus 300 -P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 300 -PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4467778888888888888888888888887653221 11111 122445677888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--------------------------------
Q 004006 499 SSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN-------------------------------- 546 (779)
Q Consensus 499 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-------------------------------- 546 (779)
+.. +.+...+..+..+|...|++++|++.|+++.+.... +...+..
T Consensus 379 ~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 379 QVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 764 235666777778888888888888888887765332 2222222
Q ss_pred ----------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 547 ----------IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNA 616 (779)
Q Consensus 547 ----------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 616 (779)
+...+...|++++|++.|++.....+. +...+..+...|.+.|++++|+..++++.+.... +...+..
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a 534 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYA 534 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 233445678888888888888877654 5556677778888888888888888888765433 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---------------------------------------CCCCCHHHHHHHHHHHH
Q 004006 617 LILGLVEKRQMEKAIEILDEMTLA---------------------------------------GISPNEHTYTTIMHGYA 657 (779)
Q Consensus 617 li~~~~~~~~~~~A~~~~~~m~~~---------------------------------------~~~~~~~~~~~li~~~~ 657 (779)
+...+...++.++|+..++.+... ..+.+...+..+...+.
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 333334444445444444332100 01334456667788888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 658 SLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAAD 737 (779)
Q Consensus 658 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 737 (779)
+.|++++|+..|+++++.. +.+...+..++.+|...|++++|+++++++.... +.+...+..+..++...|++++|.+
T Consensus 615 ~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999875 4578888999999999999999999999887653 4556677888889999999999999
Q ss_pred HHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 738 LMQQMKQEGVQ--P---DVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 738 ~~~~m~~~g~~--p---d~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
++++++...-. + +...+..+...+...|+.++|..+|+..
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998864221 1 2356777788899999999999998753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-24 Score=251.75 Aligned_cols=488 Identities=11% Similarity=0.036 Sum_probs=361.9
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH---------
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY--------- 334 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------- 334 (779)
+.|++.+.+++..+|+ ++..+..++..+.+.|+.++|.+.++++.+.... +...+
T Consensus 45 d~a~~~l~kl~~~~p~---------------~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 45 DLVRQSLYRLELIDPN---------------NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 8899999999999997 7777888999999999999999999999987532 22221
Q ss_pred -------HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 335 -------TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (779)
Q Consensus 335 -------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (779)
..+...+...|++++|++.|+++.+.+. ++.. ....+.......|+.++|++.|+++.+..+. +...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 2334568889999999999999987643 3322 1112222233569999999999999998655 7788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--------------------------------CChhh-------H--------
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGID--------------------------------APIDI-------Y-------- 439 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------------~~~~~-------~-------- 439 (779)
+..++...|+.++|++.|+++.+.... ++... +
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988653210 00000 0
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH---
Q 004006 440 ------HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH-NMKTY--- 509 (779)
Q Consensus 440 ------~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~--- 509 (779)
......+...|++++|+..|++.++.... +...+..+..+|.+.|++++|+..|++..+..-.. +...|
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 01234567789999999999999886432 67889999999999999999999999998754221 11112
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHH
Q 004006 510 ---------SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFM 580 (779)
Q Consensus 510 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 580 (779)
..+...+.+.|++++|+..|+++++.... +...+..+..++...|++++|++.|+++.+.... +...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 12245677899999999999999987543 6677888999999999999999999999876543 222222
Q ss_pred H------------------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 581 P------------------------------------------IIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (779)
Q Consensus 581 ~------------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 618 (779)
. +...+...|++++|+..|+++.+..+. +...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 2 223345678899999999998887554 567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----------------------- 675 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------------- 675 (779)
..|.+.|++++|+..++++++.. +.+...+..+...+...++.++|+..++++...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88999999999999999987653 223333333333334444444444444332110
Q ss_pred ----------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 676 ----------------GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (779)
Q Consensus 676 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (779)
..+.+...+..+...+.+.|++++|+..++++.+.. +.+...+..++.+|...|++++|++++
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 123455566778888899999999999999998875 667888899999999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 740 QQMKQEGVQP-DVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 740 ~~m~~~g~~p-d~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+.+.+. .| +..++..+..++...|+.++|.++++++
T Consensus 661 ~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 661 AKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 988763 34 4556777888888999999999998875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-24 Score=214.13 Aligned_cols=482 Identities=12% Similarity=0.107 Sum_probs=388.5
Q ss_pred HHHHHHHhcCCc--cHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 004006 268 REFRKAVETQPE--NWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR 345 (779)
Q Consensus 268 ~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (779)
+.|...+..++. .-+.+++.|..-..-+. ....|..-..+.|++.+|++.....-.++.. +....-.+-..+.+..
T Consensus 19 ~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~~-~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~ 96 (966)
T KOG4626|consen 19 EAFSRKLDQSVSSSGSSSVLQQFNKTHEGSD-DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGS 96 (966)
T ss_pred HHHHHHhccCcccccchHHHHHhccCCccch-hHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhccc
Confidence 445555555443 23455555554433222 2556777888999999999998887766422 3344444446677777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 004006 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVR 425 (779)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (779)
+++....--...++.. +--.++|..+.+.+...|++++|+..++.+++..+. .+..|..+..++...|+.+.|.++|.
T Consensus 97 r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 97 RLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred chhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 7777666555555543 336889999999999999999999999999998665 88899999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004006 426 DMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN 505 (779)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (779)
+.++.+ +........+...+...|+.++|...|.+.++... --...|..|...+-..|+...|++.|++..+. .|+
T Consensus 175 ~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 175 EALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred HHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc
Confidence 999874 22344556667777889999999999999887522 13568999999999999999999999999885 454
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 004006 506 -MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (779)
Q Consensus 506 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 584 (779)
...|-.|.+.|...+.+++|+..|.+....... ..+.+..+...|...|.++-|+..|++.++..+. -...|+.|..
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nlan 328 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLAN 328 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHH
Confidence 568889999999999999999999998876433 5678888888999999999999999999998766 5678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 004006 585 GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTG 663 (779)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~ 663 (779)
++...|++.+|.+.|.+.+...+. .....+.|...|...|.+++|..+|....+- .|. ....+.|...|.+.|+++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHH
Confidence 999999999999999999987554 5778899999999999999999999998875 344 467899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 664 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
+|+..|++.+... +.-...|+.+...|...|+.+.|.+.+.+.+..+ +--...++.|..+|...|+..+|+.-+++.+
T Consensus 406 ~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 406 DAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 9999999999864 3346789999999999999999999999998865 4455678999999999999999999999998
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCC
Q 004006 744 QEGVQPD-VHTYTSFINACKCSKS 766 (779)
Q Consensus 744 ~~g~~pd-~~~~~~l~~a~~~~g~ 766 (779)
+ ++|| ...|-.++.+.....+
T Consensus 484 k--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 484 K--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred c--cCCCCchhhhHHHHHHHHHhc
Confidence 7 6787 3355555555433333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-24 Score=209.66 Aligned_cols=387 Identities=14% Similarity=0.125 Sum_probs=330.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~ 373 (779)
-..+|..+.+.+-..|++++|+.+++.+++...+ ....|-.+..+|...|+.+.|.++|.+.++.+ |+ .-..+.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 5678899999999999999999999999998533 67899999999999999999999999998864 44 44556677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
..+...|+.++|...|.++++.... -.++|..|.-.+-..|+..+|+.-|++..+.+ +.-...|..|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcch
Confidence 8888899999999999999987554 57789999999999999999999999999875 344678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN-MKTYSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
+|+..|.+....... ....+..|...|...|.++.|++.|++.++. .|+ ...|+.|.+++-..|++.+|...|.+.
T Consensus 270 ~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999998875322 4678888999999999999999999999885 455 678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004006 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVH 612 (779)
Q Consensus 533 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 612 (779)
+..... .....+.|...|...|.+++|..+|....+..+. -...++.|...|.+.|++++|+..|++.++..+. -..
T Consensus 347 L~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAd 423 (966)
T KOG4626|consen 347 LRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FAD 423 (966)
T ss_pred HHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHH
Confidence 886443 5678899999999999999999999999887655 4567888999999999999999999999885332 367
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (779)
.|+.+...|-..|+.+.|+..+.+.+.. .|. ...++.|...|...|+..+|+.-|+..++.. +.-...|..++.++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCL 500 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHH
Confidence 8999999999999999999999999875 344 4678999999999999999999999999875 33355666676665
Q ss_pred HHcC
Q 004006 692 CKSG 695 (779)
Q Consensus 692 ~~~g 695 (779)
.--.
T Consensus 501 q~vc 504 (966)
T KOG4626|consen 501 QIVC 504 (966)
T ss_pred HHHh
Confidence 4433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-21 Score=214.53 Aligned_cols=489 Identities=11% Similarity=0.054 Sum_probs=324.3
Q ss_pred hHHHHHhhhcccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004006 238 NKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ 317 (779)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (779)
..-++.....+...|+. +.|...|+++++.+|. +...+..|+..|.+.|++++|+.
T Consensus 44 ~~~~f~~a~~~~~~Gd~---------~~A~~~l~~Al~~dP~---------------n~~~~~~LA~~yl~~g~~~~A~~ 99 (987)
T PRK09782 44 IYPRLDKALKAQKNNDE---------ATAIREFEYIHQQVPD---------------NIPLTLYLAEAYRHFGHDDRARL 99 (987)
T ss_pred HHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHH
Confidence 33344444446667777 8999999999999998 66777889999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--------HHccCCHHHHHHHH
Q 004006 318 TFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--------FAKMGNAEAADHWF 389 (779)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~ 389 (779)
.+++..+. .|+...|..++..+ +++++|..+++++.+.... +..++..+... |.+. ++|.+.+
T Consensus 100 ~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL 170 (987)
T PRK09782 100 LLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQL 170 (987)
T ss_pred HHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHH
Confidence 99999887 44555554444333 8888999999999887433 56666666665 5555 4444444
Q ss_pred HHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCC
Q 004006 390 EEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 390 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~g~ 467 (779)
+ .......++.. ....+..+|.+.|++++|++++.++.+.+ ..+......|...|.. .++ +++..++... +
T Consensus 171 ~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----l 243 (987)
T PRK09782 171 N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----I 243 (987)
T ss_pred H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----c
Confidence 4 32222232333 34444788888888888888888888875 4445556666667776 355 6666664432 2
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHH--HHHH----------------------------HHHHH
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK-HNMK--TYSM----------------------------LINGF 516 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~--~~~~----------------------------ll~~~ 516 (779)
+-|...+..++..|.+.|+.++|.++++++...... |... .|+. ++..+
T Consensus 244 k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (987)
T PRK09782 244 FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVL 323 (987)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 246667777777777777777777777665432111 1110 0000 01111
Q ss_pred ---------------------------------------------------------------HhcCCHHHHHHHHHHHH
Q 004006 517 ---------------------------------------------------------------LKLKDWANVFAVFEDVM 533 (779)
Q Consensus 517 ---------------------------------------------------------------~~~~~~~~a~~~~~~~~ 533 (779)
.+.|+.++|..+|++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~ 403 (987)
T PRK09782 324 LKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRY 403 (987)
T ss_pred HhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 12244444444444433
Q ss_pred HC-C-CC--------------------------------------------------------------C--CHHHHHHH
Q 004006 534 RD-G-LK--------------------------------------------------------------P--DVVLYNNI 547 (779)
Q Consensus 534 ~~-g-~~--------------------------------------------------------------~--~~~~~~~l 547 (779)
.. + .. . +...|..+
T Consensus 404 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L 483 (987)
T PRK09782 404 PFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL 483 (987)
T ss_pred CCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH
Confidence 21 0 00 0 22233333
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (779)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 627 (779)
..++.. ++.++|+..+.+..... |+......+...+...|++++|+..|+++... .++...+..+..++.+.|++
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~ 558 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNG 558 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCH
Confidence 333333 45556666555555443 33322333344446788888888888887654 23344456667777888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 628 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
++|..++++.++.+ ..+...+..+...+...|++++|...+++.++.. |+...+..+..++.+.|++++|+..+++.
T Consensus 559 ~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 559 AARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888887764 2233333344444556699999999999998864 46788889999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP-DVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
.... +.+...++.+..++...|++++|+.++++.++. .| +...+..+..++...|+.++|...+++.
T Consensus 636 L~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 636 LELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8876 667788899999999999999999999999884 44 5677889999999999999999988764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-20 Score=208.86 Aligned_cols=431 Identities=11% Similarity=-0.020 Sum_probs=303.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.+..+.+.|.+.|++++|+..|+++++. .|+...|..+..+|.+.|++++|++.+++.++.+. .+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3556788999999999999999999876 56788899999999999999999999999998753 36788999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (779)
..|++++|+..|..+...+...+.. ...++..+.. ..+.....+..+.. +.+...+..+.. |...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 9999999999998776654332222 2222222211 22333333333332 222233333322 222211111222
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 458 VFERLKECGFSPS-IISYGCLINL---YTKIGKVSKALEVSKVMKSSG-IKH-NMKTYSMLINGFLKLKDWANVFAVFED 531 (779)
Q Consensus 458 ~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (779)
.++...+. .++ ...+..+... ....+++++|.+.|+...+.+ ..+ ....|..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12211111 111 1111111111 123468889999999888754 222 455677788888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 532 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
.++.... +...|..+..++...|++++|+..|+++...... +...|..+...+...|++++|+..|++.++.... +.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 8876433 4567888888888999999999999998887654 5677888888899999999999999999887543 57
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF------TYE 685 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~ 685 (779)
..+..+..++.+.|++++|+..|++.+... +.+...|+.+..++...|++++|+..|++.+......+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 777888888999999999999999888653 4456788888899999999999999999988764221111 122
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
..+..+...|++++|..++++....+ +.+...+..+++++.+.|++++|+++|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22223344689999999999988765 455567888999999999999999999998764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-20 Score=196.03 Aligned_cols=515 Identities=14% Similarity=0.100 Sum_probs=382.9
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHH--h--------------------hCCCCHHHHHHHHHH
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFE--R--------------------IKKPSRREFGLMVNY 305 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~~~~li~~ 305 (779)
+-|+|+. +.|+..|.++++.||.+...++.... . ...-++...+.|.+.
T Consensus 209 f~kl~~~---------~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 209 FWKLGMS---------EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANH 279 (1018)
T ss_pred HHhccch---------hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 5566665 88999999999999987666654311 0 123477788899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 306 YARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
|.-.|++..+..+.+.+...... .-..+|..+.++|...|++++|...|.+..+....--...+.-|+.+|.+.|+++
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 99999999999999998876321 1234688999999999999999999988776542211445566889999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTR----NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
.+...|+++.+.... +..+...|+..|...+ ..++|..++.+..+.- +.|...|-.+...|.+..-+.. +.+|
T Consensus 360 ~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~ 436 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAY 436 (1018)
T ss_pred HHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHH
Confidence 999999999987544 7778888888887775 5677777777777764 5577788888777766554444 7766
Q ss_pred HHHH----HCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHH
Q 004006 460 ERLK----ECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS---GIKHNM------KTYSMLINGFLKLKDWANVF 526 (779)
Q Consensus 460 ~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~ 526 (779)
.... ..+-..-....|.+...+...|++++|...|...... ...++. .+-..+...+-..++++.|.
T Consensus 437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 6554 3344456778899999999999999999999888765 122222 23344666777788999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 606 (779)
+.|..+.+..+. -...|-.++.+.-..++..+|...++++...+-. +...+..+...+.+...+..|.+-|..+.+.-
T Consensus 517 e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 517 EMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 999999886322 2344555554444567888999999998876543 66677777778888889998988777776542
Q ss_pred C-CCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 607 C-IPTVHTFNALILGLVE------------KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 607 ~-~~~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
. .+|..+.-+|.+.|.. .+.+++|+.+|.+.+... +-|...-+.+.-+++..|++.+|..+|.++.
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVr 673 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVR 673 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHH
Confidence 2 2466666666665543 345788999999988765 5677777888888999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004006 674 NEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ-KIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (779)
Q Consensus 674 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (779)
+.. ..+..+|..+..+|..+|++..|+++|+...+. .-..+..+.++|.+++.+.|++.+|.+.+......-..-..+
T Consensus 674 Ea~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 674 EAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 875 345668899999999999999999999988754 334577889999999999999999999999888754333345
Q ss_pred HHHHHHHHH------------------HhcCCcchHHHhHhhhc
Q 004006 753 TYTSFINAC------------------KCSKSNQRNGRSWSEAK 778 (779)
Q Consensus 753 ~~~~l~~a~------------------~~~g~~~~a~~~~~~m~ 778 (779)
.||..+... ...++.++|.++|.+|+
T Consensus 753 ~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 753 KFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 566544332 11245677777777765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-20 Score=203.04 Aligned_cols=427 Identities=10% Similarity=-0.033 Sum_probs=310.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+......+.+.|++++|++.|++.++. .|+...|..+..+|.+.|++++|++.++++++.+.. +..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3455677888999999999999999885 467889999999999999999999999999988654 7789999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
..|++++|+..|..+...+...+.. ...++..+.. ..+........+.. ..+...+..+...+ ..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 9999999999887776543221211 1222222111 12222233333321 12233333333322 2222222222
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004006 493 VSKVMKSSGIKHN-MKTYSMLING---FLKLKDWANVFAVFEDVMRDG-LKP-DVVLYNNIIRAFCGMGNMDRAIHIVKE 566 (779)
Q Consensus 493 ~~~~m~~~~~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (779)
.+....+. .+. ...+..+... ....+++++|.+.|+...+.+ ..+ +...|..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22211111 111 0111111111 123478999999999998865 222 456788888899999999999999999
Q ss_pred HHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE 646 (779)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 646 (779)
.+..... ....|..+...+...|++++|+..|+++.+.... +...|..+...+...|++++|+..|++.++.. +.+.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 9987554 4567888888999999999999999999887544 67889999999999999999999999999875 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH------HHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF------VYN 720 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~ 720 (779)
..+..+..++.+.|++++|+..|+++++.. +.+...++.+..++...|++++|...|++.....-..+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 778888999999999999999999999864 5578899999999999999999999999998764111111 122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 721 ILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
..+..+...|++++|.+++++.++. .|+ ...+..++..+...|+.++|.++|++.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2223344479999999999999875 344 557889999999999999999999864
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-19 Score=185.86 Aligned_cols=504 Identities=11% Similarity=0.085 Sum_probs=343.4
Q ss_pred hHHHHHHHHHHhcCCcc--------HH---------HHHHHHHhhCCCCHHHHHHHH---HHHH---HcCChHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPEN--------WQ---------AVVSAFERIKKPSRREFGLMV---NYYA---RRGDMHRARQTFE 320 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~li---~~~~---~~g~~~~A~~~~~ 320 (779)
-.|..+|.+++..+|.. |. .+..+|.+.-..++....+++ -.-. ....+..++.++.
T Consensus 181 ~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~ 260 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQ 260 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 78899999988888742 22 233345444333332222221 1111 2223556666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 321 NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
+.-..+ ..+..+.+.|.+.|.-.|++..++.+...++..-.. .-...|..++++|-..|++++|..+|.+.......
T Consensus 261 ~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 261 RAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 665543 236677778888887888888888888777664211 12445777888888888888888888887776544
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHhhH
Q 004006 399 LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG----NEEKCLIVFERLKECGFSPSIISY 474 (779)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~ 474 (779)
--+..+..++..|...|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+..+.- ..|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 235566777888888888888888888887763 555666677777776664 4566667776666653 2366677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------
Q 004006 475 GCLINLYTKIGKVSKALEVSKVMK----SSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD---GLKPDV------ 541 (779)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~------ 541 (779)
..+..++....-+.. +.+|.... ..+........|.+...+...|++.+|...|+..... ...+|.
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 666666655444433 66555433 3444567778888888888888888888888777654 112222
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (779)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 621 (779)
.+-..+...+-..++++.|.++|..+.+..+. -...|..++.+....+...+|...+..+...+- .+...+..+...+
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLH 574 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHH
Confidence 23334556667777888888888888876433 233344443333344677788888888776543 3666677777788
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004006 622 VEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYAS------------LGDTGKAFEYFTKLRNEGLELDVFTYEALL 688 (779)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 688 (779)
.+...+..|.+-|......- ..+|....-.|.+.|.. .+..++|+++|.+++... +-|...-|.++
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchh
Confidence 88888888877666554332 23566666666665532 345789999999999886 45888889999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCc
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQPDVHTYTSFINACKCSKSN 767 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~a~~~~g~~ 767 (779)
-+++..|++.+|..+|.+..+.. .....+|-.+..+|...|+|..|++.|+...+. +-.-+..+...|..++...|.+
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999998764 345678889999999999999999999987765 3344677889999999999999
Q ss_pred chHHHhHh
Q 004006 768 QRNGRSWS 775 (779)
Q Consensus 768 ~~a~~~~~ 775 (779)
.+|.+...
T Consensus 733 ~eak~~ll 740 (1018)
T KOG2002|consen 733 QEAKEALL 740 (1018)
T ss_pred HHHHHHHH
Confidence 99988764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-21 Score=200.71 Aligned_cols=312 Identities=14% Similarity=0.143 Sum_probs=218.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN---MKTYSMLINGFLKLK 520 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~ 520 (779)
..+...|++++|+..|.++.+.+. .+..++..++..+...|++++|..+++.+.......+ ...+..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344455666666666666655432 1344556666666666666666666666655321111 234556666667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHhcCCHHHHH
Q 004006 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRAL 596 (779)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 596 (779)
++++|..+|+++.+... .+..++..++.++.+.|++++|.++++.+...+..... ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777665422 24556667777777777777777777777665433211 13445666777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 676 (779)
.+|+++.+.... +...+..+...+.+.|++++|.++|+++.+.+......++..++.+|...|++++|..+++++.+..
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888875432 4667777888899999999999999998875422224567888899999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 004006 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR---RGDVWEAADLMQQMKQEGVQPDVHT 753 (779)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~ 753 (779)
|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+..++..++++|.+.++.+|..
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~- 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR- 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence 45556688999999999999999999998876 4888888888877664 568999999999999888777765
Q ss_pred HHHHHHHHHhcCCcc
Q 004006 754 YTSFINACKCSKSNQ 768 (779)
Q Consensus 754 ~~~l~~a~~~~g~~~ 768 (779)
..|.+.|...
T Consensus 355 -----~~c~~cg~~~ 364 (389)
T PRK11788 355 -----YRCRNCGFTA 364 (389)
T ss_pred -----EECCCCCCCC
Confidence 3466666543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-18 Score=190.38 Aligned_cols=494 Identities=10% Similarity=0.007 Sum_probs=334.1
Q ss_pred hHHHHHHHHHHhcCCccHHH-----HH----------------HHH-HhhCCC--CHHHHHHH-HHHHHHcCChHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQA-----VV----------------SAF-ERIKKP--SRREFGLM-VNYYARRGDMHRARQT 318 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~-----~~----------------~~~-~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~ 318 (779)
+.|...|.+++..+|.+-.. .. .+. .+...+ .......+ .+.|.+.|+|++|+++
T Consensus 125 ~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 125 VKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 77888888888888764211 11 011 111122 34433333 7788888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 004006 319 FENMRARGIEPTLHVYTNLIHAYAV-GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (779)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (779)
+.++.+.+.. +......|..+|.. .++ +++..+++.. +.-+...+..++..|.+.|+.++|.+++.++.....
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 8888887533 45556666667776 356 7777775532 224777888888888888888888888877644321
Q ss_pred C-CChhhH------------------------------HHHHHHHHhcCChHHHHHHH----------------------
Q 004006 398 T-LNAIIY------------------------------GNIIYAQCQTRNMERAEALV---------------------- 424 (779)
Q Consensus 398 ~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~~~---------------------- 424 (779)
. +...+| ..++..+.+.+.++-++++.
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 1 111111 11133344444444333331
Q ss_pred -------HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHHHcCC---HHHHHH
Q 004006 425 -------RDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC-G-FSPSIISYGCLINLYTKIGK---VSKALE 492 (779)
Q Consensus 425 -------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~ 492 (779)
+.|.+. .+.+......+.....+.|+.++|..+|...... + -..+....+.++..|.+.+. ..++..
T Consensus 359 ~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 111111 0223333444444556778888888888877652 1 12234455577777777766 223322
Q ss_pred H----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 493 V----------------------SKVMKSS-GI-KH--NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN 546 (779)
Q Consensus 493 ~----------------------~~~m~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 546 (779)
+ +...... +. .. +...|..+..++.. ++.++|+..|.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 2 1112111 11 23 56677778777776 78888999888877653 55444444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 547 IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626 (779)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 626 (779)
+...+...|++++|...|+++.... ++...+..+..++.+.|++++|...++..++.... +...+..+...+...|+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCC
Confidence 4556678999999999999986653 33445667777889999999999999999986532 33334344445556699
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004006 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKE 706 (779)
Q Consensus 627 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (779)
+++|+..+++.++. .|+...|..+..++.+.|+.++|+..|++++... +.+...++.+..++...|++++|+.++++
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999976 4678889999999999999999999999999986 56788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 707 MSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV-HTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
..+.. +.+...+..+..++...|++++|+..+++.++ +.|+. .+............+++.+.+-+++
T Consensus 669 AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 669 AHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99876 67788999999999999999999999999997 45654 4455556666666667766665543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-18 Score=192.51 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=220.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
...++..+.+.|++++|+.+++........ +...+..++.++...|++++|+..|+++++... .+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 334566677778888888888777776433 344555555666667888888888888777642 256677777777778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (779)
.|++++|+..|+++.+..+. +...+..++.++...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 88888888888887776433 56677777777777888888887777776653 2233333333 236677777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 004006 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN----VFAVFEDVMR 534 (779)
Q Consensus 459 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~ 534 (779)
++.+.+.....+...+..++..+.+.|++++|+..++++.+.. ..+...+..+...|...|++++ |+..|+++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 7777665322233444455666777777777777777777653 2355666667777777777764 6777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (779)
Q Consensus 535 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 614 (779)
.... +...+..+...+.+.|++++|+..++++....+. +...+..+..++.+.|++++|+..|+.+.+.... +...+
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 5443 5566777777777777777777777777766544 4445566666777777777777777777665332 22233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 615 NALILGLVEKRQMEKAIEILDEMTLA 640 (779)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~ 640 (779)
..+..++...|++++|+..|++..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33455667777777777777777654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-20 Score=195.24 Aligned_cols=291 Identities=14% Similarity=0.155 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT---LHVYTNLIHA 340 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 340 (779)
+.|...|.+++..+|. +...+..+...|.+.|++++|+.+++.+.......+ ...+..+...
T Consensus 52 ~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 52 DKAIDLFIEMLKVDPE---------------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5666666666666554 333455566666666666666666666655421111 1345555666
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCC
Q 004006 341 YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN----AIIYGNIIYAQCQTRN 416 (779)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 416 (779)
|.+.|++++|+.+|+++.+.. +.+..++..++.+|.+.|++++|++.|+++.+.+.... ...+..++..+.+.|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 666666666666666665542 22455566666666666666666666666655433211 1123445555556666
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+++|+++|+++.+.. +.+...+..+...|.+.|++++|+++|+++.+.+......+++.++.+|.+.|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665543 2234455555566666666666666666655432211123455555566666666666666665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCC
Q 004006 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG---MGNMDRAIHIVKEMQKERHR 573 (779)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 573 (779)
+.+. .|+...+..++..+.+.|++++|..+|+++.+. .|+...++.++..+.. .|+.++++.++++|.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 5554 234344455555566666666666666555543 3455555555554443 33555555555555554443
Q ss_pred CC
Q 004006 574 PT 575 (779)
Q Consensus 574 ~~ 575 (779)
++
T Consensus 351 ~~ 352 (389)
T PRK11788 351 RK 352 (389)
T ss_pred CC
Confidence 33
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-18 Score=192.74 Aligned_cols=424 Identities=10% Similarity=-0.005 Sum_probs=238.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+.....-.+......|+.++|+++++++.... ..+...+..+..++.+.|++++|..+|++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33333444555555666666666666665421 2244456666666666666666666666666542 224555566666
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
++...|++++|+..++++.+..+. +.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 666666666666666666665333 444 6666666666666666666666666653 3344444555555666666666
Q ss_pred HHHHHHHHHHCCCCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHH
Q 004006 455 CLIVFERLKECGFSPSI------ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDW---ANV 525 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a 525 (779)
|+..++++.. .|+. .....++..+... .....+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~------------------------------~~~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMP------------------------------TRSEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccc------------------------------ccChhHHHHHHHHH
Confidence 6666554432 1210 0000011111000 00111222 455
Q ss_pred HHHHHHHHHC-CCCCCHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCcccHHHHHHHHHhcCCHHHHHHH
Q 004006 526 FAVFEDVMRD-GLKPDVV-L----YNNIIRAFCGMGNMDRAIHIVKEMQKERHR-PTSRTFMPIIHGFARAGEMKRALEI 598 (779)
Q Consensus 526 ~~~~~~~~~~-g~~~~~~-~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 598 (779)
+..++.+.+. ...|+.. . ....+.++...|++++|+..|+.+...+.. |+. ....+..+|...|++++|+.+
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence 5555555532 1111110 0 011122334556666677666666665422 111 112235566666777777777
Q ss_pred HHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCC
Q 004006 599 FDMMRRSGCIP---TVHTFNALILGLVEKRQMEKAIEILDEMTLAGI-----------SPN---EHTYTTIMHGYASLGD 661 (779)
Q Consensus 599 ~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~ 661 (779)
|+++.+..... ....+..|..++...|++++|..+++.+.+... .|+ ...+..+...+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 76665543211 123344455566667777777777776665420 122 1234556667777888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+++|+++++++.... +.+...+..++..+...|+.++|++.++++.+.. +.+...+..++..+.+.|++++|+.++++
T Consensus 375 ~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 375 LPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888888887764 4567777888888888888888888888887765 55566667777778888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHH
Q 004006 742 MKQEGVQPDVHTYTSFINAC 761 (779)
Q Consensus 742 m~~~g~~pd~~~~~~l~~a~ 761 (779)
+++ ..||......|-...
T Consensus 453 ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 453 VVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHH--hCCCCHHHHHHHHHH
Confidence 877 355544444444333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-18 Score=191.39 Aligned_cols=335 Identities=7% Similarity=-0.005 Sum_probs=274.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.-...++..+.+.|++++|+.+++..+..... +...+..++.++...|++++|+..|+++....+. +...+..++.++
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 34556777888999999999999999987543 5667777778888899999999999999998655 778899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 491 (779)
...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+...... +...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999999874 556778888999999999999999999988765432 33334333 3478899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH----HHHHHHHH
Q 004006 492 EVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDR----AIHIVKEM 567 (779)
Q Consensus 492 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~ 567 (779)
.+++.+.+.....+...+..+..++...|++++|+..|+++.+.... +...+..+..++...|++++ |+..|+++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99999877643344555566678888999999999999999987544 67788889999999999886 79999999
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 004006 568 QKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE- 646 (779)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~- 646 (779)
....+. +...+..+...+.+.|++++|+..++++.+.... +...+..+..+|.+.|++++|+..|+++...+ |+.
T Consensus 277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 887665 6678888899999999999999999999987654 56677788889999999999999999988763 443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 676 (779)
..+..+..++...|+.++|...|+++.+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 334445677889999999999999998764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-17 Score=178.89 Aligned_cols=448 Identities=12% Similarity=0.063 Sum_probs=334.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL--HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+.+....+-..++.|+++.|+..|+++.+.. |+. ..+ .++..+...|+.++|+..+++..... .........++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 3344445666779999999999999999874 443 244 88888889999999999999998321 22334444446
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
..|...|++++|+++|+++.+..+. +...+..++..|.+.++.++|++.++++... .++...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 7899999999999999999998766 6778888899999999999999999999887 344555555555555567776
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHH-HH----hcCC-
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY------SMLING-FL----KLKD- 521 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~ll~~-~~----~~~~- 521 (779)
+|++.++++.+... -+...+..++.++.+.|-...|+++..+-... +.+....+ ..+++. .. ...+
T Consensus 187 ~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 187 DALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 79999999998743 26777888899999999999999877653321 11111111 011110 00 1122
Q ss_pred --HHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 004006 522 --WANVFAVFEDVMRD-GLKPDV-----VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMK 593 (779)
Q Consensus 522 --~~~a~~~~~~~~~~-g~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (779)
.+.|+.-++.+... +..|.. ....-.+-++...|++.++++.|+.+...+......+...+.++|...++.+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34556666665542 222321 1222345578899999999999999999887666678888999999999999
Q ss_pred HHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHH
Q 004006 594 RALEIFDMMRRSGC-----IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI-------------SPNEH-TYTTIMH 654 (779)
Q Consensus 594 ~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------------~~~~~-~~~~li~ 654 (779)
+|+.+|+.+..... .++......|..+|...+++++|..+++++.+... .||-. .+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999999976431 22444467888999999999999999999987311 12322 3445667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 655 GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWE 734 (779)
Q Consensus 655 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 734 (779)
.+...|++.+|.+.++++.... +-|..+...+...+...|+..+|+++++.+.... +.+..+...++.++...|++++
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 7889999999999999998886 6799999999999999999999999998777664 6677788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH
Q 004006 735 AADLMQQMKQEGVQPDVHTYTS 756 (779)
Q Consensus 735 A~~~~~~m~~~g~~pd~~~~~~ 756 (779)
|.++++.+.+. .|+......
T Consensus 503 A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 503 MELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHhh--CCCchhHHH
Confidence 99999999874 555443333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-17 Score=188.72 Aligned_cols=388 Identities=11% Similarity=0.072 Sum_probs=234.6
Q ss_pred HHHHHHHHhhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 004006 282 QAVVSAFERIK---KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (779)
Q Consensus 282 ~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (779)
..++..|.... ..+...+..+...+...|++++|+.+|+++++... .+...+..++.++...|++++|+..+++++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555433 34566789999999999999999999999998742 356678888899999999999999999999
Q ss_pred HcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--
Q 004006 359 EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI-- 436 (779)
Q Consensus 359 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 436 (779)
+.. +.+.. +..+..++...|+.++|+..|+++.+..+. +...+..++.++...+..++|++.++.+.. .|+.
T Consensus 111 ~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~ 184 (765)
T PRK10049 111 SGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKR 184 (765)
T ss_pred HhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHH
Confidence 874 33566 989999999999999999999999998665 777778888899999999999999877654 2221
Q ss_pred ----hhHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004006 437 ----DIYHMMMDGYTI-----IGNE---EKCLIVFERLKEC-GFSPSII-SYGCLINLYTKIGKVSKALEVSKVMKSSGI 502 (779)
Q Consensus 437 ----~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 502 (779)
.....++..+.. .+++ ++|++.++.+.+. ...|+.. .+..
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~-------------------------- 238 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR-------------------------- 238 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH--------------------------
Confidence 011112222211 1112 3444444444432 1111110 0000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---Cccc
Q 004006 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP---TSRT 578 (779)
Q Consensus 503 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 578 (779)
.....+.++...+++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++....... ....
T Consensus 239 -----a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 239 -----ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred -----HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 0000012223334444455545444443321 111 11112334444555555555555444332110 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004006 579 FMPIIHGFARAGEMKRALEIFDMMRRSGC-----------IPT---VHTFNALILGLVEKRQMEKAIEILDEMTLAGISP 644 (779)
Q Consensus 579 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 644 (779)
...+..++.+.|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~ 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PG 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 22333344455555555555555444311 112 1234455566677777777777777776653 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004006 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (779)
Q Consensus 645 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (779)
+...+..+...+...|+.++|++.+++++... +.+...+..++..+...|++++|+.+++++.+.
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55667777777777777777777777777764 344556666666777777777777777777765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-16 Score=176.78 Aligned_cols=442 Identities=10% Similarity=0.038 Sum_probs=331.0
Q ss_pred hhhcccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 244 ARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMR 323 (779)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (779)
...+..+.|++ +.|+..|.+++..+|. +......++..+...|+.++|+..+++..
T Consensus 40 ~aii~~r~Gd~---------~~Al~~L~qaL~~~P~---------------~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 40 SLIIRARAGDT---------APVLDYLQEESKAGPL---------------QSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred HHHHHHhCCCH---------HHHHHHHHHHHhhCcc---------------chhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 34458899998 8999999999999996 32122267888889999999999999998
Q ss_pred HCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh
Q 004006 324 ARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAII 403 (779)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 403 (779)
... .........+...|...|++++|+++|+++++.... +...+..++..|...++.++|++.++++..... +...
T Consensus 96 ~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~ 171 (822)
T PRK14574 96 SSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQN 171 (822)
T ss_pred cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHH
Confidence 321 122333444466888899999999999999997544 678888889999999999999999999988744 3444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH------HHH
Q 004006 404 YGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISY------GCL 477 (779)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~------~~l 477 (779)
+..++..+...++..+|++.++++.+.+ +.+...+..++..+.+.|-...|+++..+-.+. +.+...-+ ..+
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 5555556656777777999999999985 667888899999999999999998876654322 11111111 011
Q ss_pred HHHH---H--HcC---CHHHHHHHHHHHHHC-CCCCC-HHH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004006 478 INLY---T--KIG---KVSKALEVSKVMKSS-GIKHN-MKT----YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543 (779)
Q Consensus 478 i~~~---~--~~g---~~~~A~~~~~~m~~~-~~~~~-~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 543 (779)
+..- . ... -.+.|+.-++.+... +..|. ... ..-.+-++...+++.++++.|+.+...+...-.++
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1110 0 111 234455556665542 11232 122 22345677889999999999999999887666778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------
Q 004006 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERH-----RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC----------- 607 (779)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 607 (779)
-..+..+|...++.++|+.+|+.+..... .++......|..+|...+++++|..+++.+.+.-.
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 88999999999999999999999976542 11222346788899999999999999999987322
Q ss_pred --CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 608 --IPTV-HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684 (779)
Q Consensus 608 --~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 684 (779)
.||- ..+..++..+...|++.+|++.++++.... +-|......+...+...|...+|+..++.+.... +.+..+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~ 487 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILE 487 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHH
Confidence 1232 233455677889999999999999998764 6788899999999999999999999998887764 5577788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004006 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVY 719 (779)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 719 (779)
...+.++...|++++|..+.+++.+.. |+....
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~~~ 520 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRS--PEDIPS 520 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhC--CCchhH
Confidence 889999999999999999999998764 544433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-16 Score=150.53 Aligned_cols=460 Identities=16% Similarity=0.136 Sum_probs=325.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC----CHhHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY-TNLIHAYAVGRDMEEALSCVRKMKEEGIEM----SLVTYSII 372 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~l 372 (779)
....|..-|..+..+.+|+..|+.+++...-|+.-.. -.+.+.+.+...+.+|+++|+-.+..-... .....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 4445677788888899999999999987666665443 335577889999999999998777642222 23455666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------------CCChhhHH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI------------DAPIDIYH 440 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~~~~ 440 (779)
...+.+.|+++.|+..|+.+.+. .||..+-..|+.++...|+.++..+.|.+|+..-. .|+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 67788999999999999999876 57888888888899999999999999999986322 22333333
Q ss_pred HHHH-----HHHhcC--CHHHHHHHHHHHHHCCCCCCHhh---H------------------HHHHHHHHHcCCHHHHHH
Q 004006 441 MMMD-----GYTIIG--NEEKCLIVFERLKECGFSPSIIS---Y------------------GCLINLYTKIGKVSKALE 492 (779)
Q Consensus 441 ~l~~-----~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~---~------------------~~li~~~~~~g~~~~A~~ 492 (779)
..+. ...+.. +.++++..--+++.--+.||... | ..-..-|.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 3321 111111 12223222222221111111100 0 012345778999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004006 493 VSKVMKSSGIKHNMKTYSMLINGF--LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (779)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 570 (779)
+++-+.+.+-+.-...-+.|-..+ ...+++..|.+.-+..+..+- -+......-.+.....|++++|.+.|++.+..
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 999887765443333444443333 335678888887777664321 13333333444556689999999999999886
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004006 571 RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT 650 (779)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 650 (779)
.-.-....| .+.-.+...|++++|++.|-++...- .-+..++.-+.+.|-...+...|++++...... ++.|....+
T Consensus 520 dasc~ealf-niglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALF-NIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 433222222 23335778899999999998765431 126777778888899999999999999877654 466778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hc
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA-RR 729 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 729 (779)
.|...|-+.|+-.+|++++-+--.. ++.+..+...|...|....-+++++.+|++..- +.|+..-|..|+..|+ |.
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 9999999999999999887765544 467888889999999999999999999998865 4799999988877665 67
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 004006 730 GDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSN 767 (779)
Q Consensus 730 g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~ 767 (779)
|++++|.++++...++ +.-|.....-|+..|...|..
T Consensus 674 gnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9999999999999886 777888888999999888754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-15 Score=155.31 Aligned_cols=471 Identities=14% Similarity=0.122 Sum_probs=337.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
..+.+.-.|++++|..++.+.++... .+...|.+|...|-..|+.++++..+-..-..+. -|...|..+.....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhccc
Confidence 34445555999999999999999853 3778999999999999999999998866666543 377999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHHH
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPID----IYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~ 457 (779)
++.|.-+|.++++..+. +...+..-...|-+.|+..+|.+.|.++....-+.|.. .-..+++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999998655 67777777889999999999999999999975322322 23344667778888899999
Q ss_pred HHHHHHHCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---------------------------CCHHHH
Q 004006 458 VFERLKECG-FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK---------------------------HNMKTY 509 (779)
Q Consensus 458 ~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---------------------------~~~~~~ 509 (779)
.++.....+ -.-+...++.++..+.+..+++.|......+...... .+..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 998877632 2235567889999999999999999988887762222 222221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 004006 510 SMLINGFLKLKDWANVFAVFEDVMRDG--LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA 587 (779)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (779)
.+.-++...+..+....+...+.+.. +.-+...|..+..+|...|++.+|+.+|..+......-+...|..+..+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 12233344444444444444455544 344567888899999999999999999999998877667889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhc
Q 004006 588 RAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA--------GISPNEHTYTTIMHGYASL 659 (779)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~ 659 (779)
..|.+++|.+.|..++...+. +...--.|-..+.+.|+.++|.+.+..+..- ...++..........+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 999999999999999987543 4555666777889999999999999986522 2345555666677788888
Q ss_pred CCHHHHHHHHHHHHHcCC----------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH------HhCC
Q 004006 660 GDTGKAFEYFTKLRNEGL----------------------ELDVFTYEALLKACCKSGRMQSALAVTKEM------SAQK 711 (779)
Q Consensus 660 g~~~~a~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~ 711 (779)
|+.++-+.+...|+.... .-.....-..+.+-.+.++.....+.+..- ...+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 998876666665554211 111222222333333333322222211111 1122
Q ss_pred CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 712 IPRNTF--VYNILIDGWARRGDVWEAADLMQQMKQEGV-QPDVH----TYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 712 ~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~----~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+..+.+ .+.-++..+++.+++++|+.++..+.+..+ .-|.. .-...+.++...+++..|..+++.|
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222332 446678889999999999999999886532 22332 2345667788899999999998876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-13 Score=138.05 Aligned_cols=450 Identities=10% Similarity=0.034 Sum_probs=240.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 004006 311 DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFE 390 (779)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (779)
..+.|+-++.++.+. +.-+...| -+|++...|+.|.+++++..+. ++-+..+|.+....--..|..+...++++
T Consensus 391 ~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344466666666554 12222222 3344445566666666666554 44456666666666666666666666555
Q ss_pred HHH----HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 391 EAK----ERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 391 ~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
+.. ..|+..+...|..=...|-+.|..--+..+....+..|+.. ...+|+.-...|.+.+.++-|..+|...++
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 432 23455555566666666666666665555655555555422 234555555666666666666666665555
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 465 CGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLY 544 (779)
Q Consensus 465 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 544 (779)
.- .-+...|...+..--..|..++...+|++....- +-....|-.....+-..|++..|..++.++.+.... +...|
T Consensus 545 vf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiw 621 (913)
T KOG0495|consen 545 VF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIW 621 (913)
T ss_pred hc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHH
Confidence 42 2244455555555555555666666665555542 223334444444455556666666666555554333 44555
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004006 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK 624 (779)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 624 (779)
-..+.......++++|..+|.+.... .++...|.--+....-.++.++|++++++.++.- ..-...|-.+...+-+.
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHH
Confidence 55555555556666666666555543 2344444444444444555566666665555531 11233444445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004006 625 RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVT 704 (779)
Q Consensus 625 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (779)
++++.|.+.|..-... .+.....|-.|...=.+.|..-+|..+|++.+-.+ +-+...|...|.+-.+.|+.+.|..++
T Consensus 699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555443332 12223344444444445555555555555555544 335555555555555555555555554
Q ss_pred HHHHhCC-----------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHH
Q 004006 705 KEMSAQK-----------------------------IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTY 754 (779)
Q Consensus 705 ~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~ 754 (779)
.++.... ...|..+...+...|....++++|.+.|.+.+.. .|| ..+|
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~w 854 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAW 854 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHH
Confidence 4443221 1234455555666666677777788888777764 333 4567
Q ss_pred HHHHHHHHhcCCcchHHHhHhh
Q 004006 755 TSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 755 ~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
..+..-+..+|.-+.-.++++.
T Consensus 855 a~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 7777777777766555555543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-14 Score=141.17 Aligned_cols=466 Identities=14% Similarity=0.110 Sum_probs=381.6
Q ss_pred hHHHHHHHHHHhcCCcc---HHH------------HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HH
Q 004006 264 EWHRREFRKAVETQPEN---WQA------------VVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENM----RA 324 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 324 (779)
++|+-++.++.+.=|.+ |.. ++..+...-+-++.+|.+-...=-++|+.+...++..+. ..
T Consensus 393 ~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ 472 (913)
T KOG0495|consen 393 EDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA 472 (913)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 56888889998887765 322 222233344557888887777777889988888887764 44
Q ss_pred CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 004006 325 RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI 402 (779)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (779)
.|+..+...|-.=...|-..|..-.+..+....+..|++- -..||+.-...|.+.+.++-|+.+|..+++..+. +..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhH
Confidence 6788888889888889999999999999999888877653 2568999999999999999999999999887544 788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (779)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 482 (779)
.|..++..--..|..++-..+|+++...- +.....|.+....+...|+...|..++....+.... +...|-..+....
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 89999888889999999999999999873 556677888889999999999999999999887544 7788999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHH
Q 004006 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD-VVLYNNIIRAFCGMGNMDRAI 561 (779)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~ 561 (779)
...++++|.++|.+.+.. .++..+|..-++..--.++.++|++++++.++. .|+ .-.|-.+...+.+.++++.|.
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999998875 567888877777777789999999999999886 333 346777778899999999999
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 562 HIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG 641 (779)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 641 (779)
..|..-.+.-+. ..-.|..|...-.+.|.+-.|..++++.+..++. +...|-..|.+-.+.|+.+.|..++.+.++.-
T Consensus 706 ~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 706 EAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888776555333 5567888888888889999999999999988776 88999999999999999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004006 642 ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721 (779)
Q Consensus 642 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (779)
+.+...|..-|....+.++--++...+++. .-|..++..+...|.....++.|.+.|.+.++.+ +.+..+|..
T Consensus 784 -p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~ 856 (913)
T KOG0495|consen 784 -PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAW 856 (913)
T ss_pred -CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHH
Confidence 556678888888777777755555555544 3466778888999999999999999999999876 566678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 722 LIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
+...+.++|.-++-.+++.+....
T Consensus 857 fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcc
Confidence 899999999988889999888763
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-14 Score=150.16 Aligned_cols=492 Identities=11% Similarity=0.107 Sum_probs=341.2
Q ss_pred cccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004006 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARG 326 (779)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (779)
.|.+ |+. +.|.+++.+++..+|. +...|..|..+|-+.|+.++++..+-.+...+
T Consensus 149 lfar-g~~---------eeA~~i~~EvIkqdp~---------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 149 LFAR-GDL---------EEAEEILMEVIKQDPR---------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN 203 (895)
T ss_pred HHHh-CCH---------HHHHHHHHHHHHhCcc---------------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 3555 787 9999999999999996 67789999999999999999998887777665
Q ss_pred CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh---
Q 004006 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAII--- 403 (779)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--- 403 (779)
+.|...|-.+.....+.|++++|.-+|.+.++.. +.+-....--+.+|-+.|+...|...|.++....+..+..-
T Consensus 204 -p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 204 -PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred -CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 3477899999999999999999999999999875 33666666778889999999999999999998765334333
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------
Q 004006 404 -YGNIIYAQCQTRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG--------------- 466 (779)
Q Consensus 404 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g--------------- 466 (779)
....+..+...++.+.|.+.++.....+ -..+...++.++..|.+...++.+......+....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 3344556677788888998888877632 23456678899999999999999998888776611
Q ss_pred ------------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 467 ------------FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 467 ------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
+..+...+ .++-++.+....+....+...+.+.+ ..-+...|.-+..+|...|++.+|+.+|..+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred ccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 12222221 22233344444444444444555555 3335567888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH--------
Q 004006 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR-------- 604 (779)
Q Consensus 533 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 604 (779)
......-+..+|-.+..+|...|.+++|.+.|+++....+. +...-..|...+.+.|+.++|.+.+..+..
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 88766667889999999999999999999999999987654 555666778889999999999999988542
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCCH
Q 004006 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG----------------------ISPNEHTYTTIMHGYASLGDT 662 (779)
Q Consensus 605 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----------------------~~~~~~~~~~li~~~~~~g~~ 662 (779)
.+..++....-.....+.+.|+.++=+.+...|+... ..-...+...++.+-.+.++.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 2334455555556667778888776554444443211 111122223333343444332
Q ss_pred HHHHHHHHHH------HHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHhc
Q 004006 663 GKAFEYFTKL------RNEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIP-RNTF----VYNILIDGWARR 729 (779)
Q Consensus 663 ~~a~~~~~~~------~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~ 729 (779)
.....-+..- ...++..+ -..+..++.++++.+++++|+.+...+....+. -+.. .=..++.+....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~ 679 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYA 679 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 2221111111 11122211 235677788899999999999999988764321 1222 225566677788
Q ss_pred CCHHHHHHHHHHHHHc-CCC--CC-HHHHHHHHHHHHhcCCc
Q 004006 730 GDVWEAADLMQQMKQE-GVQ--PD-VHTYTSFINACKCSKSN 767 (779)
Q Consensus 730 g~~~~A~~~~~~m~~~-g~~--pd-~~~~~~l~~a~~~~g~~ 767 (779)
+++.+|..+++.|... ++. +. ...|++..+...+.|+-
T Consensus 680 ~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 680 RDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR 721 (895)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 222 22 22455455555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-13 Score=130.39 Aligned_cols=473 Identities=12% Similarity=0.086 Sum_probs=345.3
Q ss_pred hHHHHHhhhc-ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004006 238 NKAEVRARWV-AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRAR 316 (779)
Q Consensus 238 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (779)
+++..-..|| |++=... .++...|+.+|.++|..+-. +...|..-+.+=.++.+...|+
T Consensus 68 rnR~~~~~WikYaqwEes-----q~e~~RARSv~ERALdvd~r---------------~itLWlkYae~Emknk~vNhAR 127 (677)
T KOG1915|consen 68 RNRLNMQVWIKYAQWEES-----QKEIQRARSVFERALDVDYR---------------NITLWLKYAEFEMKNKQVNHAR 127 (677)
T ss_pred HHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHhcccc---------------cchHHHHHHHHHHhhhhHhHHH
Confidence 3445567788 7766544 56668899999999987754 4555666777778888899999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 317 QTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.++++++..-.. -...|...+.+--..|++..|.++|++-.+ ..|+...|++.++.-.+.+.++.|..+|++..-.
T Consensus 128 Nv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~- 203 (677)
T KOG1915|consen 128 NVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV- 203 (677)
T ss_pred HHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-
Confidence 999999876322 334566666666677999999999998887 4789999999999999999999999999998875
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--Hh
Q 004006 397 ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE-GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--II 472 (779)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~ 472 (779)
.|++..|...+..-.+.|++..|..+|....+. |. ..+...+.++...-..+..++.|.-+|.-.++.- +.+ ..
T Consensus 204 -HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raee 281 (677)
T KOG1915|consen 204 -HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEE 281 (677)
T ss_pred -cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHH
Confidence 478889998888888999999999999888764 11 1223445555565667788888998888877652 222 33
Q ss_pred hHHHHHHHHHHcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HH
Q 004006 473 SYGCLINLYTKIGKVSKALEV--------SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV-VL 543 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~ 543 (779)
.|..+...--+.|+.....+. |+.+.+.+ ..|-.+|--.++.....|+.+...++|++.+.+-..... ..
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 444444444445654433332 44455543 457788888888888889999999999999876322111 12
Q ss_pred HHHHH--------HHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 544 YNNII--------RAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGF----ARAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 544 ~~~l~--------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
|...| -.-....+.+.+.++|+..++.-+. ...||.-+--+| .+..++..|.+++-..+.. -|..
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH-kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~ 437 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH-KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCch
Confidence 22211 1123578899999999998885332 556665544444 4678899999999887754 4678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG-LELDVFTYEALLKA 690 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 690 (779)
.+|...|..-.+.++++...+++++.++-+ +-|..+|......=..+|+.+.|..+|.-+++.. +.-....|...|+-
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 889999998899999999999999999876 5677888888888888999999999999988763 23345677777777
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA-----RRG-----------DVWEAADLMQQMK 743 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 743 (779)
-...|.++.|..+++.+++.. ....+|-++..-=. ..| ....|.++|+++.
T Consensus 517 Ei~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 788999999999999998763 55556665544332 233 4667788887764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-15 Score=144.16 Aligned_cols=437 Identities=15% Similarity=0.105 Sum_probs=303.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh----hhHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT-YSIIVGGFAKMGNAEAADHWFEEAKERHATLNA----IIYGN 406 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 406 (779)
.+...|..-|.....+.+|+..|+-+++...-|+.-. -..+.+.|.+...+.+|+++|+-++..-+..+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3444555667777888999999999988766566443 345778899999999999999988876444333 35566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------CCCHhhH
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF------------SPSIISY 474 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~------------~~~~~~~ 474 (779)
+...+.+.|.++.|+..|+.+.+. .|+..+-..|+-++...|+.++..+.|.+|+..-. .|+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 666788999999999999999886 56777666677788889999999999999986422 2233333
Q ss_pred HHHHH-----HHHHcC--CHHHHHHHHHHHHHCCCCCCHH---HHHH------------------HHHHHHhcCCHHHHH
Q 004006 475 GCLIN-----LYTKIG--KVSKALEVSKVMKSSGIKHNMK---TYSM------------------LINGFLKLKDWANVF 526 (779)
Q Consensus 475 ~~li~-----~~~~~g--~~~~A~~~~~~m~~~~~~~~~~---~~~~------------------ll~~~~~~~~~~~a~ 526 (779)
+..|. -.-+.+ +.++++-.-.+++.--+.|+.. -|+. -..-|.+.|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 32221 111111 1222222222222222333321 0110 123467889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCG--MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
++++-+.+.+-+.-...-+.|...+.- ..++..|.++-+......-. +......-......+|++++|.+.|++.+.
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 999888766433223333333333332 34577777777666543211 222222222234467999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684 (779)
Q Consensus 605 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 684 (779)
..-.-....|| +...+-..|++++|+++|-++... +..+......+...|....+..+|++++.+.... ++.|..++
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 53332222233 334567889999999999876532 2456777888889999999999999999988776 57799999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-h
Q 004006 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACK-C 763 (779)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~-~ 763 (779)
..|...|-+.|+-..|.+..-+--.. ++-+.++..-|..-|....-+++|+.+|++..- +.|+..-|-.++..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 99999999999999999887655443 577888888888888899999999999999864 7999999998887765 5
Q ss_pred cCCcchHHHhHhhh
Q 004006 764 SKSNQRNGRSWSEA 777 (779)
Q Consensus 764 ~g~~~~a~~~~~~m 777 (779)
+|++++|..+|+++
T Consensus 673 sgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDI 686 (840)
T ss_pred cccHHHHHHHHHHH
Confidence 89999999999875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-14 Score=134.81 Aligned_cols=446 Identities=14% Similarity=0.173 Sum_probs=258.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCChHHH-HHHHHHHHHcCCCCCHhHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEA-LSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~l 372 (779)
+.+-+.|+.. ...|.+.++.-+|++|...|...+...-..|+.. |.+..+.--| ++.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3344555554 3568899999999999999888777776666644 3333333322 23344444443 2234444
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
+.|.+.+ -+|+-. ..+..++..||.+.|+--..++|.+++++..+.....+..+||.+|.+-.-.-
T Consensus 191 -----K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-- 256 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-- 256 (625)
T ss_pred -----ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc--
Confidence 3444333 222221 12556677777777777777777777777766655666777777765433222
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHH
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK----ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWA-NVFA 527 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~ 527 (779)
..++..+|....+.||..|+|.++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++-. .+..
T Consensus 257 --~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 257 --GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred --cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 15566677766677777777777777777776554 3456666777777777777777777666655442 3344
Q ss_pred HHHHHHHC--C--CC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCC---CcccHHHHHHHHHhcCCH
Q 004006 528 VFEDVMRD--G--LK----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER----HRP---TSRTFMPIIHGFARAGEM 592 (779)
Q Consensus 528 ~~~~~~~~--g--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~~~~ 592 (779)
++.++... | ++ -|...|...+..|.+..+.+-|.++...+.... +.+ ....|..+..+.++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44444332 1 11 144556666666667777776666655544321 011 122344555566666667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C----------
Q 004006 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG-D---------- 661 (779)
Q Consensus 593 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~---------- 661 (779)
+.....|+.|.-.-+.|+..+...++.+..-.++++-.-+++.+++..|..-+...-..++..+++.. +
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 77777777776555556666666666666666776666666666666553333333333333333222 0
Q ss_pred ----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHH---HHHHHHH
Q 004006 662 ----------TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK-IPRNTFVYN---ILIDGWA 727 (779)
Q Consensus 662 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~---~l~~~~~ 727 (779)
.+.....-.++... +......+..+-.+.+.|+.++|+++|.-+...+ --|-....| -+++.-.
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 11111112223333 4455667778888899999999999999885432 122233344 4555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 728 RRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 728 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
+.+....|..+++-|...++..-...-+.+...|.-+
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iN 609 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAIN 609 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcC
Confidence 7788889999999987765432222334444444433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-13 Score=128.70 Aligned_cols=450 Identities=13% Similarity=0.122 Sum_probs=343.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..-...=..+++++.|+.+|++++.-+. .+...|-..+.+-.++..+..|.+++++.+.. ++.-...|.-.+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 34455556666678889999999999998763 37778888999999999999999999999875 33334556666667
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
--..|++.-|.++|++..+- .|+..+|.+.|..-.+.+.++.|..++++.+-- +|++..|-.....-.+.|+...+
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 77889999999999998864 789999999999999999999999999999874 78999999999999999999999
Q ss_pred HHHHHHHHHC-CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH---
Q 004006 456 LIVFERLKEC-GF-SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFAV--- 528 (779)
Q Consensus 456 ~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--- 528 (779)
..+|+...+. |- .-+...+.++...-.++..++.|.-+|+-.+.. ++.+ ...|..+...--+-|+.......
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 9999998764 21 012344555556566678899999999988875 2223 45566555555555665544432
Q ss_pred -----HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHH-----H---HHhcCCHHH
Q 004006 529 -----FEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS-RTFMPIIH-----G---FARAGEMKR 594 (779)
Q Consensus 529 -----~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~-----~---~~~~~~~~~ 594 (779)
|+.+++.+.. |-.+|-..+..-...|+.+...++|+..+..-+.... ..|...|. + -....+.+.
T Consensus 306 KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4555555443 7788888999999999999999999999876433211 12222111 1 135689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 595 ALEIFDMMRRSGCIPTVHTFNALI----LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT 670 (779)
Q Consensus 595 a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 670 (779)
+.++|+..++. +.-...+|.-+= .-..++.++..|.+++...+ |.-|...+|..-|..=.+.++++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 222344554332 33346788999999999887 457888999999998899999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 671 KLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI-PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 671 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (779)
+.++.+ +-+..+|......-...|+.+.|..+|+-++.... ......|-..|+-=...|.++.|..+++++++. ..
T Consensus 462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~ 538 (677)
T KOG1915|consen 462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQ 538 (677)
T ss_pred HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cc
Confidence 999997 55888999999888999999999999999887531 223346777787778899999999999999875 23
Q ss_pred CHHHHHHHHH
Q 004006 750 DVHTYTSFIN 759 (779)
Q Consensus 750 d~~~~~~l~~ 759 (779)
...+|-++..
T Consensus 539 h~kvWisFA~ 548 (677)
T KOG1915|consen 539 HVKVWISFAK 548 (677)
T ss_pred cchHHHhHHH
Confidence 3445655544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-14 Score=137.39 Aligned_cols=119 Identities=20% Similarity=0.221 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+..+|.+||.++++--..+.|.++|.+..+...+.+..+||.+|.+-.-. ...++..+|+...+.||..|+|.++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 66788999999999999999999999988877788999999999765422 23678899998889999999999999
Q ss_pred HHHccCCHHHHH----HHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004006 375 GFAKMGNAEAAD----HWFEEAKERHATLNAIIYGNIIYAQCQTRNM 417 (779)
Q Consensus 375 ~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (779)
+.++.|+|+.|. +++.+|++.|+.|...+|..+|..+++.++.
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 999999888754 4455566666666666666666666655554
|
|
| >PLN03134 glycine-rich RNA-binding protein 4; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=143.64 Aligned_cols=84 Identities=26% Similarity=0.485 Sum_probs=79.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+||++++|+++|+++|++||.|.+++|+.| +.||+++|||||+|.+.++|++|++.| ||..|+|+.|+|++
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kGfaFV~F~~~e~A~~Al~~l--ng~~i~Gr~l~V~~ 110 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD-RETGRSRGFGFVNFNDEGAATAAISEM--DGKELNGRHIRVNP 110 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEe
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
+..+...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9776543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.9e-13 Score=128.52 Aligned_cols=363 Identities=14% Similarity=0.071 Sum_probs=234.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhH
Q 004006 396 HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PSIISY 474 (779)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~ 474 (779)
+...|...++..+.++-+.|....|++.|.+.... .+.....|..|.+... +. ++...+...+.. .....=
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~----e~~~~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DI----EILSILVVGLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hH----HHHHHHHhcCcccchHHHH
Confidence 34446667777777777888888888888877764 2444445544444332 12 222222221111 011111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 004006 475 GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK--PDVVLYNNIIRAFC 552 (779)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~ 552 (779)
-.+..++....+.++++.-.....+.|+.-+...-+....++....++++|+.+|+++.++++- -|..+|+.++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 2345566667778888887777777777655555555556666778888888888888877432 14566665554322
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 553 GMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIE 632 (779)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 632 (779)
....+ .++..-...-.+--..|+..+.+-|.-.++.++|...|++.++.+.. ....|+.+..-|...++...|++
T Consensus 311 ~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 21111 11111111111124456667777777788888888888888887654 56778878888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004006 633 ILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712 (779)
Q Consensus 633 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (779)
.++..++.+ +-|...|-.|..+|.-.+...-|+-+|++..... +.|...|.+|+++|.+.+++++|++.++.....+
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 888888765 5677788888888888888888888888888775 5577888888888888888888888888887765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHH--HHHHHHHhcCCcchHHHhH
Q 004006 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQ----EGVQPDVHTYT--SFINACKCSKSNQRNGRSW 774 (779)
Q Consensus 713 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~~~~--~l~~a~~~~g~~~~a~~~~ 774 (779)
..+...|..|++.|-+.++.++|..+|++-++ .|...|..... -|..-+.+.+++++|..+-
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 34557788888888888888888887777654 24443322222 2334456667776666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-13 Score=129.86 Aligned_cols=384 Identities=12% Similarity=0.050 Sum_probs=275.8
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--
Q 004006 360 EGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPID-- 437 (779)
Q Consensus 360 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 437 (779)
.+..-|.+.+...+..+.+.|....|+..|-.....- +.+-.+|..|.... .+.+.+. .+... ...+..
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~----~l~~~-l~~~~h~M 228 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS----ILVVG-LPSDMHWM 228 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH----HHHhc-CcccchHH
Confidence 3445677777777788889999999999999988752 22444444443332 2222222 22211 121111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
Q 004006 438 IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI--KHNMKTYSMLING 515 (779)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~ 515 (779)
.-..+..++......++++.-.+.+...|+.-+...-+....+.....++++|+.+|+++++++. --|..+|+.++..
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 11234567777778899999999999888876666666667777888999999999999998741 1156777776644
Q ss_pred HHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 004006 516 FLKLKDWA-NVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKR 594 (779)
Q Consensus 516 ~~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 594 (779)
-..+.... -|..++ .+. +-...|+..+.+-|+-.++.++|...|+...+.+.. ....|+.+.+-|...++...
T Consensus 309 ~~~~skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HhhhHHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 32221111 111221 111 224467777888888899999999999999998876 67789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 595 ALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 595 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
|...++.+++.+.. |-..|..|..+|.-.+...-|+-+|++..... +.|...|..|..+|.+.++.++|++.|+....
T Consensus 383 Ai~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999998654 88899999999999999999999999998764 56788999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004006 675 EGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA----QKIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ 748 (779)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 748 (779)
.| ..+...+..|.+.|-+.++.++|..++++.++ .|...+ .....-|..-+.+.+++++|..+...... | .
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~ 537 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-E 537 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-C
Confidence 87 45778999999999999999999999888765 232222 12223356667788899888887666553 2 3
Q ss_pred CCHHHHHHHHHHHHh
Q 004006 749 PDVHTYTSFINACKC 763 (779)
Q Consensus 749 pd~~~~~~l~~a~~~ 763 (779)
+...--..|+.-|.+
T Consensus 538 ~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 538 TECEEAKALLREIRK 552 (559)
T ss_pred chHHHHHHHHHHHHH
Confidence 344444445544443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-13 Score=134.90 Aligned_cols=419 Identities=12% Similarity=0.049 Sum_probs=254.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPT-LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGF 376 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~ 376 (779)
+-...+-|.++|+|++|++.|.+++.. .|| ..-|.....+|...|+++++.+.-.+.++.+ |+ +..+.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 445678899999999999999999987 667 6778888889999999999999888888853 44 56677777888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-C--CCCChhhHHHHHHHHHhcCCHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE-G--IDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
-..|++.+|+.=..-..-.+.--|..+ ..++.-.. -..|....++-.+. + +-|+.....+....+...-
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~L----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~--- 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASI-EPMAERVL----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP--- 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchh-HHHHHHHH----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc---
Confidence 888888888642222111111101111 11111100 11122222222221 1 1222222222222221100
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHH--c---CCHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTK--I---GKVSKALEVSKVMKSS---GIKHN---------MKTYSMLINGF 516 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~---~~~~~---------~~~~~~ll~~~ 516 (779)
......+.......+...+.. . ..+.+|.+.+.+-... ....+ ..+...-...+
T Consensus 266 ---------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 266 ---------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred ---------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 000000000111111111110 0 1223333332221110 00001 11111111223
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHH
Q 004006 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (779)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 596 (779)
.-.|+...+..-|+..++....++ ..|..+..+|....+.++..+.|.+..+.+.. +..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 446888888888888887654432 33667777888888888888888888888776 6777777777777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 676 (779)
.-|++.+....+ +...|--+..+..+.+++++++..|++.+.. ++.-...|+....++...+++++|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 888888886554 5667777777777888888888888888875 24446778888888888888888888888887653
Q ss_pred CC-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 677 LE-----LDV--FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 677 ~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.. .+. .+.-.++..- -.+++..|..++++..+.+ +.....|.+|...-...|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 121 1222222222 2378888888888888876 45556788888888888899999998888654
|
|
| >KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=136.82 Aligned_cols=84 Identities=25% Similarity=0.454 Sum_probs=80.6
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.++.++|-|.||+.++++++|+++|.+||.|..+.|.+| +.||.+||||||.|.+.++|.+||+.| ||+-++.-.|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylard-K~TG~~kGFAFVtF~sRddA~rAI~~L--nG~gyd~LILr 262 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARD-KETGLSKGFAFVTFESRDDAARAIADL--NGYGYDNLILR 262 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEc-cccCcccceEEEEEecHHHHHHHHHHc--cCcccceEEEE
Confidence 346679999999999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|+|++++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999886
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-13 Score=130.29 Aligned_cols=417 Identities=11% Similarity=0.032 Sum_probs=272.7
Q ss_pred HHhhhc-ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004006 242 VRARWV-AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFE 320 (779)
Q Consensus 242 ~~~~~~-~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (779)
.++... |.+.|++ ++|++.|..+++..|+ .+.-|.....+|...|+|+++++-..
T Consensus 118 lK~~GN~~f~~kkY---------~eAIkyY~~AI~l~p~---------------epiFYsNraAcY~~lgd~~~Vied~T 173 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKY---------DEAIKYYTQAIELCPD---------------EPIFYSNRAACYESLGDWEKVIEDCT 173 (606)
T ss_pred HHhhhhhhhhcccH---------HHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHHhhHHHHHHHHH
Confidence 344444 7778888 9999999999999885 35668888999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH-cC--
Q 004006 321 NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK-EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE-RH-- 396 (779)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-- 396 (779)
+.++.+.. -+..+..-.+++-..|++++|+.-..... -.|+. |..+--.+=+.+-+. |....++-.. .+
T Consensus 174 kALEl~P~-Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p 246 (606)
T KOG0547|consen 174 KALELNPD-YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQ-----AMKKAKEKLKENRPP 246 (606)
T ss_pred HHhhcCcH-HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHH-----HHHHHHHhhcccCCC
Confidence 99987422 34578888889999999999876544432 22232 222222222222221 2222222221 11
Q ss_pred CCCChhhHHHHHHHHHh------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHC---C
Q 004006 397 ATLNAIIYGNIIYAQCQ------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEEKCLIVFERLKEC---G 466 (779)
Q Consensus 397 ~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~---g 466 (779)
..|......+...++.. ....+++-..+.+..+ ..+.. ...+.+|...+.+-... .
T Consensus 247 ~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~ 312 (606)
T KOG0547|consen 247 VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESS 312 (606)
T ss_pred CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhh
Confidence 12233332222222210 0111111111111110 00000 01122222222221110 0
Q ss_pred CCC---C------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 467 FSP---S------IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (779)
Q Consensus 467 ~~~---~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (779)
..- | ..+...-...+.-.|+...|..-|+..++....+ ...|-.+..+|+...+-++.+..|....+.+.
T Consensus 313 ~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp 391 (606)
T KOG0547|consen 313 LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDP 391 (606)
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCC
Confidence 000 1 1122222333455788999999999998875333 33377788889999999999999999988766
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004006 538 KPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNAL 617 (779)
Q Consensus 538 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 617 (779)
. |..+|..-..++.-.+++++|..-|++.++..+. +...|..+..+..+.+.++++...|++.++.-+. ...+|+..
T Consensus 392 ~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~f 468 (606)
T KOG0547|consen 392 E-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLF 468 (606)
T ss_pred C-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHH
Confidence 5 6778888888888899999999999999998766 6777878888888999999999999999987433 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 618 ILGLVEKRQMEKAIEILDEMTLAGIS-----PNEHTY--TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 618 i~~~~~~~~~~~A~~~~~~m~~~~~~-----~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
...+...+++++|++.|+..++.... .+...+ -.++ .+.-.+++..|..++.+..+... -....|..|...
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~ 546 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDP-KCEQAYETLAQF 546 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHH
Confidence 99999999999999999998865311 111111 1111 12234899999999999999874 367789999999
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 004006 691 CCKSGRMQSALAVTKEMSA 709 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~ 709 (779)
-...|++++|+++|++...
T Consensus 547 ~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-12 Score=129.45 Aligned_cols=450 Identities=11% Similarity=0.097 Sum_probs=294.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHH----HHHHc-------C--
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVR----KMKEE-------G-- 361 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-------g-- 361 (779)
++.....++.+|.-.|+++.|..+...-.-. ..|.........++.+..++++|+.++. .+... +
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 5555666788888888898888877665333 3377888888899999999999999887 22110 0
Q ss_pred CCCCH-----------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 362 IEMSL-----------VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 362 ~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
+..|. ..+..-...|....++++|...|.++...+.. +...+..++....- .+.+.|+.+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHML-----TAQEEFELLESL 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhc-----chhHHHHHHhcc
Confidence 11111 11112223344555677777777777665322 22223333322211 111122222211
Q ss_pred CC----CCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004006 431 GI----DAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN 505 (779)
Q Consensus 431 ~~----~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (779)
+. ..+......+.... .+..+. .....-+...-.+..-+........+.+...+++.+..++.+.+.+.. +++
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh 277 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFH 277 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCC
Confidence 10 01111111111111 000000 000000000011223355566667777888899999999999888764 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 004006 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHG 585 (779)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (779)
...+-.-|..+.+.|+..+-..+=.++++.-+. ...+|-++.--|.-.|+..+|.+.|.+....+.. -...|..+...
T Consensus 278 ~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghs 355 (611)
T KOG1173|consen 278 LPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHS 355 (611)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHH
Confidence 666666667888888888888888888876443 5778888888888889999999999988776554 45678888899
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004006 586 FARAGEMKRALEIFDMMRRS--GCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTG 663 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 663 (779)
|+-.+..|+|+..+..+.+. |+. -...| +.--|.+.++++-|.++|.+..... +.|...++.+.-.....+.+.
T Consensus 356 fa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhH
Confidence 99999999999988877664 221 12223 3445778889999999999887653 456667777777777788899
Q ss_pred HHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 664 KAFEYFTKLRNE----G--LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAAD 737 (779)
Q Consensus 664 ~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 737 (779)
+|..+|+..+.. + ..-...+++.|+.+|.+.+.+++|+..+++..... +.+..++.+++-.|...|+++.|++
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH
Confidence 999999887722 1 01134568899999999999999999999998775 7788899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 738 LMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 738 ~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
.|.+.+. +.||..+...++..+..
T Consensus 511 ~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 511 HFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999885 78888777777665443
|
|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=156.69 Aligned_cols=82 Identities=26% Similarity=0.416 Sum_probs=78.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+.+|||+|||+.+++++|+++|++||.|.+|+|+.| +.||++||||||+|.+.++|.+|+..| ||..|+||.|+|.|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d-~~t~~skG~aFV~F~~~~~A~~Ai~~l--nG~~~~gr~i~V~~ 345 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRD-LTTNQCKGYGFVSMTNYDEAAMAILSL--NGYTLGNRVLQVSF 345 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEc-CCCCCccceEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 348999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.++.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 97764
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=137.94 Aligned_cols=83 Identities=25% Similarity=0.438 Sum_probs=76.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|+|.|+|+...|.||+..|.+||.|.+|.||.+ ...|||||||+|++.++|++|.++| ||..+.||+|.|..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN---ERGSKGFGFVTmen~~dadRARa~L--Hgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN---ERGSKGFGFVTMENPADADRARAEL--HGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEec---cCCCCccceEEecChhhHHHHHHHh--hcceeeceEEEEec
Confidence 359999999999999999999999999999999975 4567999999999999999999999 99999999999999
Q ss_pred cCCcchhh
Q 004006 231 DDGRRLKN 238 (779)
Q Consensus 231 ~~~~~~~~ 238 (779)
|..|...+
T Consensus 171 ATarV~n~ 178 (376)
T KOG0125|consen 171 ATARVHNK 178 (376)
T ss_pred cchhhccC
Confidence 98774333
|
|
| >KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-16 Score=138.57 Aligned_cols=78 Identities=31% Similarity=0.479 Sum_probs=72.8
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+||||+|+|+++.++|++.|++||+|.++.|+.| +.||||||||||+|.+.++|.+|++.. .-.|+||+-.+++|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd-~~t~rskGyGfVTf~d~~aa~rAc~dp---~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITD-KNTGRSKGYGFVTFRDAEAATRACKDP---NPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEec-cCCccccceeeEEeecHHHHHHHhcCC---CCcccccccccchh
Confidence 49999999999999999999999999999999999 999999999999999999999998764 66789999999987
Q ss_pred CC
Q 004006 232 DG 233 (779)
Q Consensus 232 ~~ 233 (779)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.7e-14 Score=141.47 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHccCCHHHHHHHH
Q 004006 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTYSIIVGGFAKMGNAEAADHWF 389 (779)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (779)
.++|+.+|+.+... +..+-.+...+.++|...+++++|.++|+.+.+... --+.++|.+++.-+-+ +-++.++
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46666666664443 222334455556666666666666666666655321 1145556555543322 1122222
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004006 390 EEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP 469 (779)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 469 (779)
.+-+-..-.....+|-+++++|.-+++.+.|++.|++.++.+ +....+|+.+.+-+....++|+|...|...+....+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 211111112244555555555555555555555555555543 223444444445555555555555555554433111
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
+...|--|.-.|.+.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.++|+.+|+++...+.+ |...--..+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHH
Confidence 22333334444555555555555555554433 123444444444444555555555555554444333 3333233333
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 550 AFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 550 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
.+...+++++|+..|+++...-+. +...+..+...|.+.|+.+.|+.-|..+.+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 444444444444444444443222 333344444444444444444444444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=137.63 Aligned_cols=226 Identities=14% Similarity=0.088 Sum_probs=105.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHH---HHHh
Q 004006 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNA-LIL---GLVE 623 (779)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~---~~~~ 623 (779)
...+...|+++.|...++.+.+..+. +...+..+...+.+.|+++++.+++..+.+.+.. +...+.. -.. .+..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333 3334444444444555555555555544444322 2221210 001 1111
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCChHH
Q 004006 624 KRQMEKAIEILDEMTLAGI---SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT-YEALLKACCKSGRMQS 699 (779)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~ 699 (779)
.+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++.++......... ...........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 1222222233333332211 12445555555566666666666666666665432211110 0111111222345556
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 700 ALAVTKEMSAQKIPRNT--FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 700 A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
+.+.+++..+.. +.|. ....++++.+.+.|++++|.+.|+........||...+.++...+.+.|+.++|.++|++
T Consensus 318 ~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 318 LEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666655543 3344 455666666666666666666666432222456666666666666666666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-14 Score=141.90 Aligned_cols=287 Identities=15% Similarity=0.106 Sum_probs=215.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANVF 526 (779)
Q Consensus 449 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (779)
.-+..+|+..|.++...-.. ...+...+..+|...+++++|.++|+.+++.. ...+..+|.+.+..+-+. -++
T Consensus 332 ~y~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence 34678899999886554222 33566678889999999999999999988752 122667888877665432 222
Q ss_pred HHH-HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 527 AVF-EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (779)
Q Consensus 527 ~~~-~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 605 (779)
..+ +.++... .-...+|-.+.++|...++.+.|++.|++.+..+.. ...+|+.+..-+.....+|+|...|+..+..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 2333322 225788999999999999999999999998887655 6778888888888888999999999988774
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004006 606 GCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYE 685 (779)
Q Consensus 606 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 685 (779)
... +-..|.-|...|.+.++++.|+-.|+++++.+ +-+.+....+...+.+.|+.++|+.+++++.....+ |...--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 322 33344445667888999999999999988765 456677778888888999999999999999887644 555555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (779)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (779)
.-+..+...+++++|+..++++++. ++.+..+|-.++..|.+.|+.+.|+.-|--|.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5667788889999999999998775 36667788889999999999999998888887753
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-12 Score=117.04 Aligned_cols=286 Identities=13% Similarity=0.203 Sum_probs=170.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHHcCCH
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI------ISYGCLINLYTKIGKV 487 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~ 487 (779)
.++.++|.++|-+|.+.+ +.+..+..+|.+.|.+.|..++|+.+...+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666666643 334455566666666677777777776666654 332 2233456667777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHH
Q 004006 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV----VLYNNIIRAFCGMGNMDRAIHI 563 (779)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 563 (779)
|.|.++|..+.+.+ ..-......|+..|....+|++|+++-+++.+.+..... ..|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888877777643 224556667777787778888888777777766544321 2344444445555667777777
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 564 VKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGIS 643 (779)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 643 (779)
+.+....+.+ ....-..+.+.+...|++..|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 7777666554 444445556666777777777777777776654444455666667777777777777777776655322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHh
Q 004006 644 PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK---SGRMQSALAVTKEMSA 709 (779)
Q Consensus 644 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 709 (779)
++ .-..|...-....-.+.|..++.+-+.. +|+...+..|++.-.. .|+..+...++++|+.
T Consensus 282 ~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 AD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 22 2222333323333345555555444443 4666666666665442 2345555555555553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-11 Score=120.70 Aligned_cols=466 Identities=11% Similarity=0.017 Sum_probs=324.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+..-+..+++-+..+.++.-|+-+-++....+ .|......+..++.-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 45566777778888888999999999887664 46666677888888899999999887765332 248888899999
Q ss_pred HHHccCCHHHHHHHHHHH----HHcC---------CCCCh-----------hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 375 GFAKMGNAEAADHWFEEA----KERH---------ATLNA-----------IIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~----~~~~---------~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++.+..+|+.|..++... .... ...|. ..+..-..+|....++++|.+.|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 999999999999998832 1100 00011 01111223455566777888887777665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 431 GIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF----SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506 (779)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (779)
+.. ....+..|+.... -.+.+.|+.+..... .-+......+.....-...-++....-....-.++.-+.
T Consensus 171 D~~-c~Ea~~~lvs~~m-----lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 171 DAK-CFEAFEKLVSAHM-----LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred chh-hHHHHHHHHHHHh-----cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 422 1222222222211 112222333322111 112222222222211111111111111111122344566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 004006 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGF 586 (779)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 586 (779)
.......+-+...+++.+..++++.+.+... +....+..-|.++...|+..+-..+=.++.+.-+. ...+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHH
Confidence 6667777788889999999999999988743 34556666677899999998888888888887665 788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 666 (779)
...|+..+|++.|.+....+.. -...|-.+..+|.-.+..+.|+..+....+.- .-...-+--+..-|.+.++++.|.
T Consensus 323 l~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 9999999999999998876443 45688899999999999999999998876542 222222334555678899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ----K--IPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (779)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (779)
++|.+..... +.|+.+++-+.-.....+.+.+|..+|+..+.. + ...-..+++.|+.+|.+.+++++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999999885 668889999988888899999999999988621 1 11234568999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 741 QMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 741 ~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
+.+.. ..-|..++.++.-.|...|+++.|...|.+
T Consensus 480 ~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 480 KALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99986 455888999999999999999999998864
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-12 Score=117.51 Aligned_cols=300 Identities=14% Similarity=0.146 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---ChhhHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL---NAIIYGNII 408 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 408 (779)
..|-.-++.+. .++.++|.++|-+|.+.... ..++..+|.+.|.+.|.++.|+++...+.++...+ ...+...|.
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34545555554 36789999999999886432 67778889999999999999999999888763221 123566778
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHHc
Q 004006 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKI 484 (779)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~ 484 (779)
.-|...|-+|.|+++|..+.+.+ ..-..+...|+..|-+..+|++|+++-+++...+-.+. ...|.-|...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 88899999999999999998865 44566778888999999999999999998887654432 12345556666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004006 485 GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIV 564 (779)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (779)
.+.+.|..++.+..+.+. -....--.+.+.+...|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 788888888888877642 2344444566777888888888888888887755545566777778888888888888888
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 004006 565 KEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE---KRQMEKAIEILDEMTL 639 (779)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~ 639 (779)
..+.+....++ ....+...-....-.+.|...+.+-+.. .|+...+..||..... .|...+.+.++++|+.
T Consensus 273 ~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 273 RRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 87776543322 2333333333333444454444433332 3677777777765443 2345555666666653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-12 Score=117.45 Aligned_cols=423 Identities=12% Similarity=0.140 Sum_probs=257.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC
Q 004006 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (779)
.+..++.+.|++++|+..|..+.... .++...+-.|.-++.-.|.+.+|..+-.+..+ +..--..|+..--+.+
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhC
Confidence 35566777788888888877776643 45566666666666666777777766544432 2333344555555666
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHHHH
Q 004006 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM-MDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~ 459 (779)
+-++-..+.+.+... ..--.+|.......-.+++|++++.+....+ +.....|.. .-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 666666655555432 2233455555555667788888888877653 333334433 35567777777777777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHH
Q 004006 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK-----LKDWANVFAVFEDVMR 534 (779)
Q Consensus 460 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~ 534 (779)
+-.++. +..+....|..+....+.-+-..|.+-.+.+...+-.. |- .+.-+++ -.+-+.|++++-.+++
T Consensus 209 ~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 209 KVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 766654 22244555555555555544444444444444432111 11 1111222 2445677777766655
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh-------cCCHHHHHHHHHHHHHCCC
Q 004006 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR-------AGEMKRALEIFDMMRRSGC 607 (779)
Q Consensus 535 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~ 607 (779)
. -| ..--.|+--|.+.++..+|..+.+++.-. +..-|..-...+.. ...+.-|.+.|+..-+.+.
T Consensus 283 ~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 283 H--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred h--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 3 22 22334566678899999998887765321 11112111111222 2345667777776655554
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004006 608 IPTV-HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686 (779)
Q Consensus 608 ~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 686 (779)
+-|. ..-..+...++-..++++.+.+++.....-.. |...--.+..+++..|++.+|.++|-.+....++.+..-...
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 4332 23345666677777889999998888776433 333444577888899999999999988877766655555566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFV-YNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTS 756 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 756 (779)
|..+|.+.+..+.||.++-++.. +-+..+ +..+.+.|.+.+.+--|.+.|+++.. +.|+...|..
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEG 499 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCC
Confidence 77888899999999888776643 233333 35566778899999889999988876 4666666653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-10 Score=117.19 Aligned_cols=433 Identities=15% Similarity=0.131 Sum_probs=238.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
..++..| ..+++...+++.+.+++.- .-...+.....-.+...|+-++|.+..+.-+..++. +.+.|..++-.+...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 3344444 5567777777777776642 222334444444445567777777777766665433 566677777667677
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
.++++|+++|..+...+.. |...|..+....++.++++-..+....+.+.. ......|..++.++.-.|++..|..++
T Consensus 89 K~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888777776544 67777777777777777777777766666653 334455677777777777787777777
Q ss_pred HHHHHCC-CCCCHhhHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 460 ERLKECG-FSPSIISYGCLI------NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 460 ~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
+...+.. ..++...|.... ....+.|..++|++.+..-... +.-....-..-...+.+.++.++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 7776543 234444443332 3344566667776665543322 1112233344456667777888888888777
Q ss_pred HHCCCCCCHHHHHHHH-HHHHhCCCHHHHH-HHHHHHHHcCCCCCcccHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCC
Q 004006 533 MRDGLKPDVVLYNNII-RAFCGMGNMDRAI-HIVKEMQKERHRPTSRTFMPIIHGFARAGEM-KRALEIFDMMRRSGCIP 609 (779)
Q Consensus 533 ~~~g~~~~~~~~~~l~-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~ 609 (779)
+.. .||..-|+..+ .++.+-.+.-++. .+|....+.-.. ...-..+--......++ +..-.++..+.+.|+.
T Consensus 246 l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r--~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p- 320 (700)
T KOG1156|consen 246 LER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR--HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP- 320 (700)
T ss_pred Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc--cccchhccHHHhCcchhHHHHHHHHHHHhhcCCC-
Confidence 765 34444444433 3443333333333 444444433111 11111111111111222 2233344455555543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 610 TVHTFNALILGLVEKRQMEKAIEILDEMT----LAG----------ISPNEH--TYTTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
.++..+...|-.-...+-..++.-.+. ..| -.|... ++..++..|-..|+++.|..+++..+
T Consensus 321 --~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 321 --SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred --chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 233333333322221110111111111 110 023333 33445666777788888888777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004006 674 NEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGV 747 (779)
Q Consensus 674 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 747 (779)
+.- +.-+..|..-.+.+...|++++|..++++..+.+ .+|...-.--+.-..++++.++|.++.....+.|.
T Consensus 399 dHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 652 2122344444567777788888888887777765 34544444556666777777788777777777664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-12 Score=131.89 Aligned_cols=291 Identities=10% Similarity=0.026 Sum_probs=128.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (779)
.|+++.|++.+.+..+.... ....+.....++.+.|+.++|.+.+.+..+..-.....+.......+...|+++.|+..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 44444454444444433211 12222333344444455555555554444321111111222234444555555555555
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHHH
Q 004006 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYS-MLINGF---LKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 459 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~~~ 534 (779)
++++.+.... +...+..+...+.+.|++++|.+++..+.+.+.. +...+. .-..++ ...+..++..+.+..+.+
T Consensus 176 l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555544321 3444555555555555555555555555554322 211111 111111 111112222223333322
Q ss_pred CCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 535 DGLK---PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTF-MPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (779)
Q Consensus 535 ~g~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 610 (779)
.... .+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+++.++...+.... |
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~ 332 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-K 332 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-C
Confidence 2111 14555555666666666666666666666654332111100 11111112234555555555555544322 3
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 611 V--HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 611 ~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 44445555666666666666666632222234555555566666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-11 Score=129.87 Aligned_cols=252 Identities=11% Similarity=0.041 Sum_probs=127.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIY--HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
.+.|++++|.+.|.++.+. .++.... ......+...|++++|...++++.+.... +......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 2222111 12234555555555555555555554322 44455555555566666666
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004006 490 ALEVSKVMKSSGIKHNM-------KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (779)
Q Consensus 490 A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 562 (779)
|.+++..+.+.+...+. .+|..++.......+.+...++++.+.+. ...+......+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666555554332111 11222222222333344444444443222 12245555566666666666666666
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI 642 (779)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 642 (779)
++++..+... +. -..++.+....++.+++++..+...+.... |...+..+...|.+.+++++|.+.|+.+.+.
T Consensus 285 ~L~~~l~~~~--~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKRQY--DE--RLVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhcCC--CH--HHHHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 6666655321 22 111222333446666666666666655433 4555556666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 643 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
.|+..++..+..++.+.|+.++|.+++++.+.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46666666666666666666666666665543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-12 Score=118.18 Aligned_cols=446 Identities=12% Similarity=0.126 Sum_probs=288.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
+.-+....++..|+.+++.-...+-+-...+--++..++.+.|++++|++.|..+.+.. .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44555677889999999887655433233455667788889999999999999888753 56888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
.+|..+-.++.+ +......|.....+.++-++...+...+... ..-..+|.......-.+.+|++++.++
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999988777643 4455556666777888888888777766543 223345555656666789999999998
Q ss_pred HHCCCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 463 KECGFSPSIISYGC-LINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV 541 (779)
Q Consensus 463 ~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 541 (779)
+..+ |.....|. +.-+|.+..-++-+.++++--.+. +.-+....|..+....+.=+-..|..-...+..++..-
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 8743 44444444 455678888888888888776664 23344555555544444323333344444444432211
Q ss_pred HHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 542 VLYNNIIRAFCGM-----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNA 616 (779)
Q Consensus 542 ~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 616 (779)
| -.+.-+++. .+-+.|++++--+.+. -......|+--|.+.+++.+|..+..++.- ..|.......
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKg 323 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKG 323 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHH
Confidence 1 122222222 3456777777666553 222334455568899999999988766532 1222333322
Q ss_pred HHHH-H----HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 617 LILG-L----VEKRQMEKAIEILDEMTLAGISPNEH-TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 617 li~~-~----~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
++.+ + .....+.-|...|+-.-+++..-|.. --.++..++.-..++++++.+++.+...-...|...| .+.++
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 2221 1 11223445556665444444333321 2234555666677899999999999887555555555 48899
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCcch
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY-TSFINACKCSKSNQR 769 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~-~~l~~a~~~~g~~~~ 769 (779)
++..|++.+|+++|-.+....+..+......|.+.|.+.++.+-|..++-++- -..+..+. ..+.+-|++.+++=-
T Consensus 403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776655444444678888999999998887765553 22233333 345567999999877
Q ss_pred HHHhHhhh
Q 004006 770 NGRSWSEA 777 (779)
Q Consensus 770 a~~~~~~m 777 (779)
|.+.|.++
T Consensus 480 aaKAFd~l 487 (557)
T KOG3785|consen 480 AAKAFDEL 487 (557)
T ss_pred HHHhhhHH
Confidence 77777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-12 Score=130.88 Aligned_cols=283 Identities=12% Similarity=0.059 Sum_probs=146.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 004006 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYS--MLINGFLKLKDWANVF 526 (779)
Q Consensus 449 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~ 526 (779)
.|++++|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666665554443111 1222323334446666666666666666553 23332222 2245566666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCCHHHHHHHH
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS-------RTFMPIIHGFARAGEMKRALEIF 599 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 599 (779)
..++++.+..+. +...+..+...|.+.|++++|.+++..+.+.....+. ..|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666665443 4555666666666666666666666666665443111 11122222222333334444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 600 DMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL 679 (779)
Q Consensus 600 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 679 (779)
+.+.+. ...+......+...+...|+.++|.+++++..+. .++... .++.+....++.+++++.++...+.. +.
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 443222 1124555555556666666666666666655542 233311 11222233455666666666655543 34
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
|...+..+...|.+.|++++|.+.|+++.+. .|+...|..|..++.+.|+.++|.+++++..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555556666666666666666666666554 3555555566666666666666666665543
|
|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-14 Score=141.94 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=78.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...++|||+|||+++|+++|+++|+.||.|++|+|++| +.||+++|||||+|.++++|.+|++.| ||..+.+++|+|
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d-~~tg~srGyaFVeF~~~e~A~~Ai~~L--nG~~l~gr~i~V 181 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRD-YKTGYSFGYAFVDFGSEADSQRAIKNL--NGITVRNKRLKV 181 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCccCcEEEEEEccHHHHHHHHHHc--CCCccCCceeee
Confidence 35579999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.++++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998654
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-15 Score=134.55 Aligned_cols=86 Identities=28% Similarity=0.514 Sum_probs=81.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++-++|||+-|+++++|.+|+..|++||.|+.|+||.| +.||+++|||||+|+++.+..+|.+.. +|..|+|+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d-~vTgkskGYAFIeye~erdm~~AYK~a--dG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD-KVTGKSKGYAFIEYEHERDMKAAYKDA--DGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeee-cccCCccceEEEEeccHHHHHHHHHhc--cCceecCcEEEE
Confidence 45579999999999999999999999999999999999 999999999999999999999999998 999999999999
Q ss_pred EecCCcchh
Q 004006 229 KLDDGRRLK 237 (779)
Q Consensus 229 ~~~~~~~~~ 237 (779)
.+-..+++.
T Consensus 176 DvERgRTvk 184 (335)
T KOG0113|consen 176 DVERGRTVK 184 (335)
T ss_pred Eeccccccc
Confidence 998887765
|
|
| >KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=116.83 Aligned_cols=87 Identities=23% Similarity=0.468 Sum_probs=80.7
Q ss_pred hhhhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 144 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
..+..+.+++||||||++.++|+.|.++|+++|.|+.|.+-.| +.+....||+||+|-+.++|..|++-+ ||..|+.
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLd-r~kktpCGFCFVeyy~~~dA~~Alryi--sgtrLdd 105 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLD-RFKKTPCGFCFVEYYSRDDAEDALRYI--SGTRLDD 105 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccc-cCCcCccceEEEEEecchhHHHHHHHh--ccCcccc
Confidence 3455678899999999999999999999999999999999999 888999999999999999999999999 9999999
Q ss_pred eEEEEEecCC
Q 004006 224 RVLTVKLDDG 233 (779)
Q Consensus 224 ~~~~v~~~~~ 233 (779)
++|+|.|..+
T Consensus 106 r~ir~D~D~G 115 (153)
T KOG0121|consen 106 RPIRIDWDAG 115 (153)
T ss_pred cceeeecccc
Confidence 9999998643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-10 Score=116.41 Aligned_cols=450 Identities=11% Similarity=0.063 Sum_probs=303.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
....+..+.++.+.|. ...+.....-.+...|+.++|.......++.++. +.+.|+.+.-.+..
T Consensus 24 kkgLK~~~~iL~k~~e---------------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFPE---------------HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HhHHHHHHHHHHhCCc---------------cchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 4455555666666665 3444455555566789999999999998887654 77889999999988
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (779)
..+|++|+++|...+..+. -|...|.-+.-.-++.++++-....-.+..+.... ....|..++.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753 37888888888888999999888877777765433 678899999999999999999999
Q ss_pred HHHHHHcCC-CCChhhHHHH------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 424 VRDMEEEGI-DAPIDIYHMM------MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 424 ~~~~~~~~~-~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+++..+... .++...+... .....+.|..++|++.+...... +......-.+..+.+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 999988652 3444444322 23456788888888887766543 111233345667889999999999999999
Q ss_pred HHHCCCCCCHHHHHHH-HHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 004006 497 MKSSGIKHNMKTYSML-INGFLKLKDWANVF-AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (779)
Q Consensus 497 m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (779)
++..+ ||...|... ..++.+-.+.-+++ .+|....+.-.. ....-..=+.......-.+..-.++..+.+.|+.+
T Consensus 245 Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 245 LLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 99874 565555554 44554344444444 666665543111 11111111111111122333446666777777543
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRR----SG----------CIPTVHTF--NALILGLVEKRQMEKAIEILDEMT 638 (779)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~~~~~~~A~~~~~~m~ 638 (779)
++..+...|-.-...+-..++.-.+.. .| -.|....| ..++..+-+.|+++.|..+++..+
T Consensus 322 ---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 ---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred ---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 444444444333322222222222211 10 13454444 455677889999999999999998
Q ss_pred HCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 004006 639 LAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF 717 (779)
Q Consensus 639 ~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (779)
.+ .|+. ..|..-...+...|++++|..++++..+.. .+|..+-..-+....++++.++|.+++....+.|. +..
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~ 473 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAV 473 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chh
Confidence 76 5654 456666788899999999999999999986 56776666777788899999999999999987763 222
Q ss_pred H--------H--HHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 718 V--------Y--NILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 718 ~--------~--~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
. | .-=+.+|.+.|++.+|++=|..+.
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 1 1 112566888888887777555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=145.77 Aligned_cols=259 Identities=18% Similarity=0.204 Sum_probs=56.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 004006 477 LINLYTKIGKVSKALEVSKVMKSSG-IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMG 555 (779)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 555 (779)
+...+.+.|++++|+++++...... ...+...|..+...+...+++++|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3445555555555555553332221 1123333333444444445555555555555443322 23333333333 3444
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 556 NMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG-CIPTVHTFNALILGLVEKRQMEKAIEIL 634 (779)
Q Consensus 556 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~ 634 (779)
++++|.++++...+.. .+...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|+.++
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455544444433322 123333344444444444444444444443221 1123334444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 004006 635 DEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (779)
Q Consensus 635 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (779)
++.++.. +.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..++++..+.+ +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 4444432 1123334444444444444444444444443332 2223334444444444444444444444444332 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 715 NTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
|......+++++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4444444444444444444444444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=144.99 Aligned_cols=258 Identities=14% Similarity=0.160 Sum_probs=79.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRDG-LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (779)
+...+.+.|++++|+++++...... ..-|...|..+...+...++++.|+..++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3555566666666666664433322 1224444555555555666666666666666655443 34444455544 4666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 591 EMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYASLGDTGKAFEYF 669 (779)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 669 (779)
++++|.+++....+.. .+...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++++
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666665554332 244445555666666666666666666655322 2334555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 670 TKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 670 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (779)
+++++.. +.|....+.++..+...|+.+++.++++...+.. +.|...+..++.+|...|+.++|+.++++..+. -..
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-ccc
Confidence 6666654 3345566666666666666666666666555432 344455566666666666666666666666653 122
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 750 DVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 750 d~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
|..+..++.+++...|+.++|.++.++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555556666666666666666665543
|
|
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-15 Score=133.31 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=78.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
...+|||.|..+++.++|++.|.+||+|.+++|++| ..|+|+||||||.|.+.++|+.||..| ||.-|++|.|+-.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~M--nGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQM--NGQWLGRRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeec-ccCCcccceeEEeccchHHHHHHHHHh--CCeeeccceeeccc
Confidence 458999999999999999999999999999999999 999999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
|..+.
T Consensus 139 ATRKp 143 (321)
T KOG0148|consen 139 ATRKP 143 (321)
T ss_pred cccCc
Confidence 96664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-10 Score=111.75 Aligned_cols=286 Identities=14% Similarity=0.122 Sum_probs=189.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (779)
.|+|..|++...+..+.+.. ....|..-+.+.-+.|+.+.+-+++.+..+.--......+-+..+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57888888887776665433 45556666677777888888888888887763345556666777778888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM-------KTYSMLINGFLKLKDWANVFAVFED 531 (779)
Q Consensus 459 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (779)
.+.+.+.+.. ..........+|.+.|++.....++..|.+.+.-.+. .+|..+++-....+..+.-...+++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888776543 5667777888888888888888888888887754443 3555555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 532 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
.... .+-+...-..++.-+.++|+.++|.++.++..+....+. ....-.+.+.++...-++..++-.+.... +.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 4332 233455555666667777777777777777766655433 11222345566666666666665554332 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
..+.+|...|.+.+.|.+|...|+..++. .++..+|+.+.+++.+.|+..+|.++.++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66667777777777777777777766554 56777777777777777777777777766653
|
|
| >PF00076 RRM_1: RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=110.09 Aligned_cols=70 Identities=27% Similarity=0.644 Sum_probs=66.8
Q ss_pred EEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 154 ~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
|||+|||.++|+++|+++|++||.|..+++..+ .+++++|||||+|.+.++|.+|++.+ ||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~--~~~~~~~~a~V~F~~~~~a~~a~~~l--~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN--SSGKSKGYAFVEFESEEDAEKALEEL--NGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE--TTSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc--ccccccceEEEEEcCHHHHHHHHHHc--CCCEECccCcC
Confidence 799999999999999999999999999999985 67888999999999999999999999 99999999986
|
(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A .... |
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=127.49 Aligned_cols=87 Identities=24% Similarity=0.439 Sum_probs=82.6
Q ss_pred hhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 146 ~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
.+..++|+|||-.||.+..+.+|.+.|-.||.|.+.++..| +.|..||+||||.|+++.++++||.+| ||..|+-|+
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvD-RATNQSKCFGFVSfDNp~SaQaAIqAM--NGFQIGMKR 356 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQAM--NGFQIGMKR 356 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeeh-hccccccceeeEecCCchhHHHHHHHh--cchhhhhhh
Confidence 34567899999999999999999999999999999999999 999999999999999999999999999 999999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
++|.+.+++-
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9999988773
|
|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=148.94 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=78.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||||||..+|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..|.|+.|+|++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l--~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSL--NGLRLQNKTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhc--ccEEECCeeEEEEe
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+++..
T Consensus 80 a~~~~ 84 (352)
T TIGR01661 80 ARPSS 84 (352)
T ss_pred ecccc
Confidence 87653
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >PLN03213 repressor of silencing 3; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-14 Score=137.91 Aligned_cols=81 Identities=14% Similarity=0.312 Sum_probs=74.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCH--HHHHHHHHHhhhCCceeeceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP--AAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+.+||||||++.+++++|+.+|+.||.|.+|.|++. || ||||||+|.+. .+..+||..| ||..+.||.|+|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE---TG--RGFAFVEMssdddaEeeKAISaL--NGAEWKGR~LKV 82 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT---KG--RSFAYIDFSPSSTNSLTKLFSTY--NGCVWKGGRLRL 82 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc---cC--CceEEEEecCCcHHHHHHHHHHh--cCCeecCceeEE
Confidence 459999999999999999999999999999999954 67 99999999987 7899999999 999999999999
Q ss_pred EecCCcchhh
Q 004006 229 KLDDGRRLKN 238 (779)
Q Consensus 229 ~~~~~~~~~~ 238 (779)
+.|++.+..|
T Consensus 83 NKAKP~YLeR 92 (759)
T PLN03213 83 EKAKEHYLAR 92 (759)
T ss_pred eeccHHHHHH
Confidence 9998886554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-08 Score=103.94 Aligned_cols=434 Identities=11% Similarity=0.122 Sum_probs=235.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEE-GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.|-..+..+.++|++......|+..+.. -+.....+|...+......|-.+-++.+|++.++. +...-...|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4444444445555555555555544332 11122334444444444555555555555555443 222344444444
Q ss_pred HhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC--HhhHHHHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEG------IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS--PS--IISYGCLINLY 481 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~--~~~~~~li~~~ 481 (779)
++.+++++|.+.+....... .+.+-..|..+.+...++-+.-..+.+ +.+...|+. +| ...|.+|.+.|
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 55555555555554443321 122333344444444433332222211 111111111 12 23455666666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHHCCC--
Q 004006 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL----------------------KDWANVFAVFEDVMRDGL-- 537 (779)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------------~~~~~a~~~~~~~~~~g~-- 537 (779)
.+.|.+++|.++|++....- .+..-|..+.++|+.- -+++-.+.-|+.++....
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 66666666666665555431 1222233333333211 122333344444443311
Q ss_pred ---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 538 ---------KPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER-H----RPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (779)
Q Consensus 538 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 603 (779)
..++..|..-+.. ..|+..+-...|.++...- + ..-...|..+...|..+|+++.|..+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 1133444443333 3567777788888776541 1 1123457888888999999999999999998
Q ss_pred HCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHhcCCHH
Q 004006 604 RSGCIPT---VHTFNALILGLVEKRQMEKAIEILDEMTLAGIS-----------------PNEHTYTTIMHGYASLGDTG 663 (779)
Q Consensus 604 ~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----------------~~~~~~~~li~~~~~~g~~~ 663 (779)
+....-- ..+|......-.+..+++.|++++++....-.. -+...|...++.-...|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 8755422 346666666677788899999998876532111 12345666677777788899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh-cC--CHHHHHHHH
Q 004006 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT-FVYNILIDGWAR-RG--DVWEAADLM 739 (779)
Q Consensus 664 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~g--~~~~A~~~~ 739 (779)
.-..+|+++++..+. +..+.......+-...-++++.+++++-+..--.|++ ..|+..+..+.+ .| ..+.|..+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999988765 3333333333444555588888888877665334444 367766665543 23 688999999
Q ss_pred HHHHHcCCCCCHH-H-HHHHHHHHHhcCCcchHHHhHhhh
Q 004006 740 QQMKQEGVQPDVH-T-YTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 740 ~~m~~~g~~pd~~-~-~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
++.++ |..|+.. | |.....-=-..|....|+.++++-
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99998 5655533 2 222222233468888888888763
|
|
| >KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-14 Score=118.81 Aligned_cols=79 Identities=29% Similarity=0.598 Sum_probs=72.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++||||||+..+++.||+.+|..||.+..|-|.+. ..|||||||++..+|..|+..| +|..|.|..|+|++
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn------PPGfAFVEFed~RDA~DAvr~L--DG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN------PPGFAFVEFEDPRDAEDAVRYL--DGKDICGSRIRVEL 81 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec------CCCceEEeccCcccHHHHHhhc--CCccccCceEEEEe
Confidence 469999999999999999999999999999877654 3799999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++.+..+
T Consensus 82 S~G~~r~ 88 (195)
T KOG0107|consen 82 STGRPRG 88 (195)
T ss_pred ecCCccc
Confidence 9877653
|
|
| >KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-15 Score=126.42 Aligned_cols=82 Identities=24% Similarity=0.535 Sum_probs=77.2
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..++.-|||||||++.||.||..+|++||.|.+|.+++| +.||+|+||||..|++..+-.-|+..| ||..|.||.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRD-k~TGKSKGFaFLcYEDQRSTILAVDN~--NGiki~gRtir 108 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRD-KKTGKSKGFAFLCYEDQRSTILAVDNL--NGIKILGRTIR 108 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEec-CCCCcccceEEEEecCccceEEEEecc--CCceecceeEE
Confidence 455668999999999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred EEecC
Q 004006 228 VKLDD 232 (779)
Q Consensus 228 v~~~~ 232 (779)
|....
T Consensus 109 VDHv~ 113 (219)
T KOG0126|consen 109 VDHVS 113 (219)
T ss_pred eeecc
Confidence 98643
|
|
| >KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-14 Score=122.89 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=76.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
-.+|-|-||.+.|+.++|+.+|++||.|-+|.|.+| +.|+.++|||||-|.+..+|+.|+++| +|..|+|+.|+|++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrd-r~Tr~sRgFaFVrf~~k~daedA~dam--DG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRD-RYTRQSRGFAFVRFHDKRDAEDALDAM--DGAVLDGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccc-cccccccceeEEEeeecchHHHHHHhh--cceeeccceeeehh
Confidence 358999999999999999999999999999999999 999999999999999999999999999 99999999999998
Q ss_pred cCC
Q 004006 231 DDG 233 (779)
Q Consensus 231 ~~~ 233 (779)
|+-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 853
|
|
| >PLN03120 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-14 Score=128.81 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=69.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++||||||++.+|+++|+++|+.||.|.+|+|++| + .++|||||+|.++++|..|+. | ||..|.||.|+|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d-~---~~~GfAFVtF~d~eaAe~All-L--nG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSE-N---ERSQIAYVTFKDPQGAETALL-L--SGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-C---CCCCEEEEEeCcHHHHHHHHH-h--cCCeeCCceEEEEe
Confidence 359999999999999999999999999999999988 3 357999999999999999994 7 99999999999998
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
+.
T Consensus 77 a~ 78 (260)
T PLN03120 77 AE 78 (260)
T ss_pred cc
Confidence 74
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-09 Score=105.78 Aligned_cols=481 Identities=13% Similarity=0.132 Sum_probs=238.3
Q ss_pred HHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCChHHHHHHHHH
Q 004006 281 WQAVVSAFERIKK---PSRREFGLMVNYYARRGDMHRARQTFENMRAR-GIEPTLHVYTNLIHAYAVGRDMEEALSCVRK 356 (779)
Q Consensus 281 ~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (779)
|..+.+.|++.-. .=+..|-.-+..+..+|+...-+.+|++.+.. -+.-....|...|......+-.+-++.+|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 5555555554321 23456666777778888888888888887764 2222345788888888888888888888888
Q ss_pred HHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCChH---HHHHHHHHH
Q 004006 357 MKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH------ATLNAIIYGNIIYAQCQTRNME---RAEALVRDM 427 (779)
Q Consensus 357 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~ 427 (779)
-++. +...-.--+..+++.+++++|.+.+......+ ...+...|..+....+++-+.- ....+++.+
T Consensus 164 YLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 164 YLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 8774 34446677777888888888888777765432 2224445555544444333222 122233333
Q ss_pred HHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc---------------------
Q 004006 428 EEEGIDAP--IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI--------------------- 484 (779)
Q Consensus 428 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------------------- 484 (779)
..+ -+| ...|.+|.+-|.+.|++++|..+|++....- ..+.-|..+.+.|+..
T Consensus 240 i~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed 315 (835)
T KOG2047|consen 240 IRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED 315 (835)
T ss_pred ccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh
Confidence 222 122 2346666666777777777777666654421 1112222222222211
Q ss_pred ---------------------------------------------CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 004006 485 ---------------------------------------------GKVSKALEVSKVMKSSGIKH------NMKTYSMLI 513 (779)
Q Consensus 485 ---------------------------------------------g~~~~A~~~~~~m~~~~~~~------~~~~~~~ll 513 (779)
|+..+-...|.+..+. +.| -...|..+.
T Consensus 316 ~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 316 DVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred hhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHH
Confidence 1222222233333221 111 112344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----------------
Q 004006 514 NGFLKLKDWANVFAVFEDVMRDGLKPD---VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR----------------- 573 (779)
Q Consensus 514 ~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------- 573 (779)
..|-..|+.+.|..+|++..+....-- ..+|.....+-.+..+++.|+++++.....-..
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 555566666666666666555422211 233444444444555566666655554332111
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 004006 574 PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE-HTYTTI 652 (779)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~l 652 (779)
-+...|...++.....|-++....+|+++++..+. +....-+...-+-....++++.+++++-+..-..|+. ..|++-
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 01122333444444455666666666666655443 2222222222233444556666666654443323443 234443
Q ss_pred HHHHH-hc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 004006 653 MHGYA-SL--GDTGKAFEYFTKLRNEGLELDVFTYEALLKAC--CKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDG 725 (779)
Q Consensus 653 i~~~~-~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 725 (779)
+.-+. +. ...+.|..+|+++++ |.+|...-+-.|+.+- -+.|....|+.+++++... +.+. ...||.+|.-
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKK 631 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 33322 11 236677777777776 4444433333333222 2345566666666665432 1221 1245554443
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCcchHHHhHh
Q 004006 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYT---SFINACKCSKSNQRNGRSWS 775 (779)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~---~l~~a~~~~g~~~~a~~~~~ 775 (779)
-+..=-...-..+++++++. -||...-. .+.+.=++.|+.+.|+.+|.
T Consensus 632 aae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya 682 (835)
T KOG2047|consen 632 AAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYA 682 (835)
T ss_pred HHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 33222222334455555442 33433222 23334455677777776664
|
|
| >KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-14 Score=125.32 Aligned_cols=83 Identities=25% Similarity=0.521 Sum_probs=79.6
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++||||+|..++++.-|...|-+||.|.+|.+..| -.++++||||||+|+..++|.+||..| |+..|.||.|+|++|
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlD-yesqkHRgFgFVefe~aEDAaaAiDNM--nesEL~GrtirVN~A 87 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLD-YESQKHRGFGFVEFEEAEDAAAAIDNM--NESELFGRTIRVNLA 87 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccc-hhcccccceeEEEeeccchhHHHhhcC--chhhhcceeEEEeec
Confidence 49999999999999999999999999999999999 889999999999999999999999999 999999999999999
Q ss_pred CCcchh
Q 004006 232 DGRRLK 237 (779)
Q Consensus 232 ~~~~~~ 237 (779)
++.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 988643
|
|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-14 Score=147.61 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=76.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...++||||||++.+++++|+++|++||.|.+|+|+.| +.||+++|||||+|.+.++|++|++.| ||..|+||.|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~l--nG~~i~GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhc--CCeEEecceeee
Confidence 45579999999999999999999999999999999999 899999999999999999999999999 999999999999
Q ss_pred EecC
Q 004006 229 KLDD 232 (779)
Q Consensus 229 ~~~~ 232 (779)
++..
T Consensus 182 ~rp~ 185 (612)
T TIGR01645 182 GRPS 185 (612)
T ss_pred cccc
Confidence 8643
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-11 Score=134.41 Aligned_cols=218 Identities=11% Similarity=0.053 Sum_probs=153.5
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCChHHHHHHHHHHHHCCCCCCH
Q 004006 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYA---------RRGDMHRARQTFENMRARGIEPTL 331 (779)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~ 331 (779)
...+.|...|.++++.+|. +...|..+..+|. ..|++++|+..++++++.+.. +.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~---------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~ 338 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN---------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NP 338 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CH
Confidence 3447899999999999987 4445555555443 234478899999998887533 66
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
..+..+..++...|++++|...|++.++.+. .+...+..+...|...|++++|+..|+++.+.++. +...+..++.++
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~ 416 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHH
Confidence 7777888888888899999999998888753 35777888888888899999999999998887654 333344445556
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 491 (779)
...|++++|++.++++.+...+.+...+..+..+|...|+.++|...+.++.... ..+....+.+...|...| ++|.
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~ 493 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERAL 493 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHH
Confidence 6678888888888887765323344556667777788888888888887765542 113444555555666666 3666
Q ss_pred HHHHHHHH
Q 004006 492 EVSKVMKS 499 (779)
Q Consensus 492 ~~~~~m~~ 499 (779)
..++.+.+
T Consensus 494 ~~l~~ll~ 501 (553)
T PRK12370 494 PTIREFLE 501 (553)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.5e-14 Score=146.25 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=78.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++||||||+.++++++|+++|++||.|.+++|.+| +.+|++||||||+|++.++|.+|++.| ||..|+|+.|+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kAI~am--Ng~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCcCCeEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++.+.
T Consensus 280 kAi~p 284 (612)
T TIGR01645 280 KCVTP 284 (612)
T ss_pred ecCCC
Confidence 98755
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-11 Score=125.18 Aligned_cols=458 Identities=13% Similarity=0.127 Sum_probs=266.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 004006 292 KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (779)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (779)
..|++.+|..||.-|+..|+.+.|- +|..|.-+....+...|+.++.+....++.+.+. .|...||..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4689999999999999999999888 9999988877778888999999888888877765 468889999
Q ss_pred HHHHHHccCCHHH---HHHHHHHHHHc----CCCCChhhHHH---------------HHHHHHhcCChHHHHHHHHHHHH
Q 004006 372 IVGGFAKMGNAEA---ADHWFEEAKER----HATLNAIIYGN---------------IIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 372 l~~~~~~~g~~~~---A~~~~~~~~~~----~~~~~~~~~~~---------------l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
|...|...|++.. ..+.++.+... |.. ....|.. .+......|.++.+++++..+.-
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999998654 33322222211 111 1111211 12222223333444443333322
Q ss_pred cCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004006 430 EGIDAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKT 508 (779)
Q Consensus 430 ~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 508 (779)
......... +++-+ ..+-.+++...+...+.+ .++..+|..+++...-.|+.+.|..++..|++.|+..+...
T Consensus 168 sa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 168 SAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred ccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 211111111 12222 222334444444444443 37888888888888888999999999999999888888777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH-----------HHHHHH---------
Q 004006 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH-----------IVKEMQ--------- 568 (779)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~~~--------- 568 (779)
|..|+-+ .++...+..++.-|.+.|+.|+..|+...+-.+.+.|....+.. ++..|.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 7666655 77778888888888888888888887766666555443221111 011110
Q ss_pred ----------------HcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHHHHhcCC---
Q 004006 569 ----------------KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG--CI-PTVHTFNALILGLVEKRQ--- 626 (779)
Q Consensus 569 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~li~~~~~~~~--- 626 (779)
-.|.......|...+. ....|.-++.+++-..+..-- .. -++..|..++.-|++.-+
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 0111111222222211 122455555555555443211 11 134445444444443211
Q ss_pred ---HHH---HHHH---------HHHHHHCCCCCCH----------------------------HHHHHHHHHHHhcCCHH
Q 004006 627 ---MEK---AIEI---------LDEMTLAGISPNE----------------------------HTYTTIMHGYASLGDTG 663 (779)
Q Consensus 627 ---~~~---A~~~---------~~~m~~~~~~~~~----------------------------~~~~~li~~~~~~g~~~ 663 (779)
... ++.. +.+.... ..||. ..-+.++..|++.-+..
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 0000000 01111 12234444555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ--KIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 664 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+++..-++....-+ ...|..||+-++...++++|..+.++.... .+..|..-+..+.+.+.+.+...++..++++
T Consensus 477 K~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 55544444433221 146788888888888888888888887542 2344556678888899999999999999998
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 742 MKQEGVQPD--VHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 742 m~~~g~~pd--~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
+.+.-...+ ..+...+++.-.-.|+.+.-.++.+-
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~ 590 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADI 590 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 876422222 45566777887888888777766654
|
|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-14 Score=134.09 Aligned_cols=83 Identities=22% Similarity=0.405 Sum_probs=78.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee-eceEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-HGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~-~~~~~~ 227 (779)
..+|-||||.||.++.|++|.-+|++.|.|-++++++| +.+|.+||||||+|.+.+.|+.||+.| |++.| .||.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~l--nn~Eir~GK~ig 157 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMD-PFSGDNRGYAFVTFCTKEEAQEAIKEL--NNYEIRPGKLLG 157 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeec-ccCCCCcceEEEEeecHHHHHHHHHHh--hCccccCCCEeE
Confidence 45679999999999999999999999999999999999 999999999999999999999999999 99999 799999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|+.+-.+
T Consensus 158 vc~Svan 164 (506)
T KOG0117|consen 158 VCVSVAN 164 (506)
T ss_pred EEEeeec
Confidence 9986443
|
|
| >PF14259 RRM_6: RNA recognition motif (a | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=104.50 Aligned_cols=70 Identities=33% Similarity=0.668 Sum_probs=64.8
Q ss_pred EEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 154 ~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
|||+|||+++++++|+++|+.||.|..+++..+ +. |+++|+|||+|.+.++|.+|++.+ +|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~-~~-~~~~~~a~v~f~~~~~a~~al~~~--~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN-KD-GQSRGFAFVEFSSEEDAKRALELL--NGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES-TT-SSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee-ec-cccCCEEEEEeCCHHHHHHHHHHC--CCcEECCEEcC
Confidence 799999999999999999999999999999998 66 899999999999999999999999 99999999985
|
k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A .... |
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=121.42 Aligned_cols=81 Identities=20% Similarity=0.463 Sum_probs=78.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
..|.|..||..+|+++++.+|+..|+|++|++++| +-+|.+-|||||-|.++.+|++|+..+ ||..|..+.|+|++|
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRD-KitGqSLGYGFVNYv~p~DAe~Aintl--NGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTL--NGLRLQNKTIKVSYA 118 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeec-cccccccccceeeecChHHHHHHHhhh--cceeeccceEEEEec
Confidence 38999999999999999999999999999999999 999999999999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
++..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 8874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-09 Score=108.15 Aligned_cols=446 Identities=12% Similarity=0.089 Sum_probs=248.0
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
+++.|++ +.|...-++++...|+ +...+..-+.++.+.++|++|+.+.+.-...
T Consensus 22 ~~~~~e~---------e~a~k~~~Kil~~~pd---------------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-- 75 (652)
T KOG2376|consen 22 HGKNGEY---------EEAVKTANKILSIVPD---------------DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-- 75 (652)
T ss_pred hccchHH---------HHHHHHHHHHHhcCCC---------------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--
Confidence 7788887 9999999999998876 5666677788888999999998555443221
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CChhhHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LNAIIYGN 406 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 406 (779)
..+..-+-.-+.+..+.+..++|+..++-.-. .+..+...-...+.+.|++++|+.+|+.+.+.+.. .+...-..
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 11111112234445578999999998872221 24557777778888999999999999999776432 11111112
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC--C----H
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTIIGNEEKCLIVFERLKECG-------FSP--S----I 471 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-------~~~--~----~ 471 (779)
++.+-. +... ..+......+ +-..+......+...|++.+|+++++...+.+ -.- + .
T Consensus 152 l~a~~a-------~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 152 LLAVAA-------ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHH-------hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 211111 1111 0122211111 22334444566788999999999998873211 000 0 1
Q ss_pred h-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCH-H-HHHHHHHHHHHCCC-------
Q 004006 472 I-SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY----SMLINGFLKLKDW-A-NVFAVFEDVMRDGL------- 537 (779)
Q Consensus 472 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~~~~-~-~a~~~~~~~~~~g~------- 537 (779)
. +-.-|.-.+-..|+.++|..+|...++.+. +|.... |.|+.+ ....++ + .++..++.......
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 1 112345567778999999999998888763 344222 222222 111111 1 12222222211000
Q ss_pred ---CCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 538 ---KPDVVLYN-NIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA--RAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 538 ---~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
....+..| .++.+| .+..+.+.++....... . ....+.+++..+. +...+.++.+++...-+....-..
T Consensus 302 s~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~-p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~ 376 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGM--S-PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK 376 (652)
T ss_pred HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--C-chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH
Confidence 00111111 122222 22333333333222211 1 1233334443332 223466777777776665444334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILD--------EMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE--GLELDV 681 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~ 681 (779)
.+.-.++...+..|+++.|++++. ...+.+..|- +-..++..+.+.++.+.|..++.+.+.. .-....
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 556666777788889998888888 4444443343 3445566667777776777777766542 001111
Q ss_pred H----HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 682 F----TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 682 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
. ++..++..-.+.|+-++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 2 23333333446788888888888888865 67888888888888876 456666665543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-10 Score=107.52 Aligned_cols=292 Identities=14% Similarity=0.133 Sum_probs=157.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEV 493 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (779)
.|+|.+|+++..+-.+.+ +-....|..-.++-.+.|+.+.+-.++.+..+..-+++...+-+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666554443 2223333333455555555555555555555542233344444455555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 004006 494 SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR 573 (779)
Q Consensus 494 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 573 (779)
+.++.+.+ +.+.........+|.+.|++.+...++..+.+.|.--|...-..
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 55555443 22445555555555555555555555555555544322211000
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 574 PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIM 653 (779)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 653 (779)
...+|..+++-....+..+.-...++..... ..-+...-.+++.-+.++|+.++|.++..+..+.+..++. ...
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 1112333333333333333333333333221 1223444555666667777777777777776666544441 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004006 654 HGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVW 733 (779)
Q Consensus 654 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 733 (779)
-.+.+.++.+.-++..++-.... +.+...+..|+..|.+.+.|.+|...|+...+. .++..+|+.+..+|.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 24455666666666666655543 345566777777777777777777777766654 477777777777777777777
Q ss_pred HHHHHHHHHH
Q 004006 734 EAADLMQQMK 743 (779)
Q Consensus 734 ~A~~~~~~m~ 743 (779)
+|.++.++.+
T Consensus 379 ~A~~~r~e~L 388 (400)
T COG3071 379 EAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH
Confidence 7777777655
|
|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=136.19 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=76.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec--eEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v 228 (779)
..+|||+|||..+|+++|+++|++||.|+.++|++| +.+|+++|||||+|.+.++|++|++.| |+..+.| ++|+|
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~~~g~~~~l~V 269 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISAL--NNVIPEGGSQPLTV 269 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCccCCCceeEEE
Confidence 458999999999999999999999999999999999 889999999999999999999999999 9999865 79999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++..+.
T Consensus 270 ~~a~~~~ 276 (346)
T TIGR01659 270 RLAEEHG 276 (346)
T ss_pred EECCccc
Confidence 9987654
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=122.40 Aligned_cols=78 Identities=23% Similarity=0.503 Sum_probs=73.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+|+|||||++..+||+++++.|++||.|.+|||.+| +||+||.|++.++|.+||..+ ||..++|..+++
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-------qGYaFVrF~tkEaAahAIv~m--Nntei~G~~VkC 232 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-------QGYAFVRFETKEAAAHAIVQM--NNTEIGGQLVRC 232 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-------cceEEEEecchhhHHHHHHHh--cCceeCceEEEE
Confidence 56789999999999999999999999999999999999 999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.|-+...
T Consensus 233 sWGKe~~ 239 (321)
T KOG0148|consen 233 SWGKEGD 239 (321)
T ss_pred eccccCC
Confidence 9976553
|
|
| >KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-13 Score=108.67 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=78.8
Q ss_pred hhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 146 ~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
....++.-|||.++...+|++++.+.|.-||.|+.+++..| +.||-.+||+.|+|++...|++|+.++ ||..|-|..
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLD-RRtGy~KGYaLvEYet~keAq~A~~~~--Ng~~ll~q~ 143 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLD-RRTGYVKGYALVEYETLKEAQAAIDAL--NGAELLGQN 143 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccc-cccccccceeeeehHhHHHHHHHHHhc--cchhhhCCc
Confidence 33455668999999999999999999999999999999999 999999999999999999999999999 999999999
Q ss_pred EEEEecC
Q 004006 226 LTVKLDD 232 (779)
Q Consensus 226 ~~v~~~~ 232 (779)
|.|.|+.
T Consensus 144 v~VDw~F 150 (170)
T KOG0130|consen 144 VSVDWCF 150 (170)
T ss_pred eeEEEEE
Confidence 9999864
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-09 Score=116.26 Aligned_cols=488 Identities=11% Similarity=0.021 Sum_probs=292.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
..|...|-+.++.++. =...|..|...|...-+...|.+.|+++.+.+- -+...+..+...|+.
T Consensus 475 ~~al~ali~alrld~~---------------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae 538 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVS---------------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAE 538 (1238)
T ss_pred HHHHHHHHHHHhcccc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhc
Confidence 4455555555555543 345688888889888899999999999988753 377788889999999
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEG-IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (779)
..+++.|..+.-..-+.. ..-...-|..+.-.|.+.++...|+..|+.....++. |...|..++.+|...|++..|++
T Consensus 539 ~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 539 ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHH
Confidence 999999988843332221 1112334555666677888999999999998887665 88899999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 423 LVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC------GFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+|.+....+ +.+...-....-+.+..|.+.+|+..+..+... +..--..++..+...+.-.|-..+|.+++++
T Consensus 618 vF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 618 VFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred hhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 998888764 223333334445567889999998888877542 1111233444444444445544444444443
Q ss_pred H-------HHCCCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHH-HHHCC--------------------CCCCHH
Q 004006 497 M-------KSSGIKHNMKTYSMLINGFLKLKDW------ANVFAVFED-VMRDG--------------------LKPDVV 542 (779)
Q Consensus 497 m-------~~~~~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~-~~~~g--------------------~~~~~~ 542 (779)
. ..+....+...|..+-++|.---.. ...+.+|.. ....+ ...+..
T Consensus 697 sie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~ 776 (1238)
T KOG1127|consen 697 SIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMY 776 (1238)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccc
Confidence 3 3322233344444333332110000 001111111 11111 111234
Q ss_pred HHHHHHHHHHh----C----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 543 LYNNIIRAFCG----M----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (779)
Q Consensus 543 ~~~~l~~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 614 (779)
+|..|+..|.+ . .+...|+..+.+.++..-. +..+|+.|... ...|++.-+...|-+.+..... ...+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhhe
Confidence 45555544433 2 2234667777777665444 66667766544 6667777777777666655433 66778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHc--CCCCCHHHHHHHHHH
Q 004006 615 NALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTK--LRNE--GLELDVFTYEALLKA 690 (779)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--~~~~--~~~~~~~~~~~l~~~ 690 (779)
.++...+.++.+++-|...|....... +.|...|-.........|+.-+...+|.. .... |--++..-|-+...-
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 788778888888888888888877654 44556666555555667777777777776 2222 223343334333334
Q ss_pred HHHcCChHHHHHHHH----------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----
Q 004006 691 CCKSGRMQSALAVTK----------EMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQPDVHTYT---- 755 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~---- 755 (779)
....|+.++-....+ +... +.+.+...|.+.+..+-+.+.+++|.++..+++.. ..+-|...|+
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 445555444333332 2222 34666777888888888888888888777765421 0123444444
Q ss_pred HHHHHHHhcCCcchHHHhH
Q 004006 756 SFINACKCSKSNQRNGRSW 774 (779)
Q Consensus 756 ~l~~a~~~~g~~~~a~~~~ 774 (779)
.+...+.-.|+++.|...+
T Consensus 1012 ~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred hhhhhhhhhcchhhHhhhh
Confidence 3334455567776665443
|
|
| >PLN03121 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-13 Score=119.98 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=68.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|++| ++.+|||||+|.+++++..|+ .| ||..|.+++|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D----~et~gfAfVtF~d~~aaetAl-lL--nGa~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS----GEYACTAYVTFKDAYALETAV-LL--SGATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC----CCcceEEEEEECCHHHHHHHH-hc--CCCeeCCceEEEE
Confidence 3459999999999999999999999999999999998 555789999999999999998 46 9999999999997
Q ss_pred ec
Q 004006 230 LD 231 (779)
Q Consensus 230 ~~ 231 (779)
..
T Consensus 77 ~~ 78 (243)
T PLN03121 77 RW 78 (243)
T ss_pred eC
Confidence 64
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-09 Score=109.23 Aligned_cols=426 Identities=15% Similarity=0.125 Sum_probs=253.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGFAKMG 380 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g 380 (779)
-.++....|+++.|+.+|-+.+..... |.+.|..-..+|+..|+|++|++--.+-++.. |+ ...|+-+..++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcc
Confidence 456777899999999999999988644 88889999999999999999999888887753 45 678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH-----HHHHhcCCHHHH
Q 004006 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM-----DGYTIIGNEEKC 455 (779)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a 455 (779)
++++|+..|.+-++.... |...+..+..++... .. +.+.|. +...|..+. ..+...-.+...
T Consensus 85 ~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~--~~-~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLED--YA-ADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred cHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHH--HH-hhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHH
Confidence 999999999999998655 788888888777211 11 111110 011111111 011111111111
Q ss_pred HHHHHHHHH-CCCCCCHhhHHHHHHHHHHcCCHHHH-H----------------------HHHHHHHH-CCCCCCHHHHH
Q 004006 456 LIVFERLKE-CGFSPSIISYGCLINLYTKIGKVSKA-L----------------------EVSKVMKS-SGIKHNMKTYS 510 (779)
Q Consensus 456 ~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A-~----------------------~~~~~m~~-~~~~~~~~~~~ 510 (779)
++.+.+... .+...+ ...++.+.......+.- . .....+.+ .....-..-..
T Consensus 152 l~~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 152 LEIIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 111100000 000000 00111111111000000 0 00000000 00000112345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------CCcccHHHHHH
Q 004006 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR------PTSRTFMPIIH 584 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~l~~ 584 (779)
.+.++..+..+++.+++.+...++.. -+..-++....+|...|.+.+......+..+.|-. .-...+..+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 56777777788888888888877764 25555666667788888877777666666555432 01112222334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 004006 585 GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASLGDTG 663 (779)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~ 663 (779)
+|.+.++++.++..|.+.......|+. ..+....++++...+...-.+ |+. .....-...+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHH
Confidence 566677788888888776654322221 223344455555554443322 221 22233356677888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 664 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
.|+..|.+++... +.|...|....-+|.+.|.+..|+.-.+...+.+ +.....|..-+.++....+|++|++.|++.+
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888876 6688888888888888888888888888877765 5555666666777777788888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHh
Q 004006 744 QEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 744 ~~g~~pd~~~~~~l~~a~~~ 763 (779)
+. .|+..-+..-+.-|..
T Consensus 454 e~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 454 EL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred hc--CchhHHHHHHHHHHHH
Confidence 74 4555544444444444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.3e-11 Score=110.16 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=178.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004006 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (779)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (779)
-+.+.++|.+.|.+.+|.+.|+.-++. .+-..||..|...|.+..+.+.|+.+|.+..+.-+. |+.....+.+++-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHH
Confidence 366778888888888888888887775 356778888888888888888888888888776433 66666677788888
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEV 493 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (779)
.++.++|.+++++..+.. +.++.....+...|...++.+-|+..|.++++.|+. +...|+.+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888888888888764 456666667777788888888888888888888876 777888888888888888888888
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004006 494 SKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 494 ~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 571 (779)
|++....--.++ ..+|..|.......|++..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..++....+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 887776533333 456666777777778888888888777765444 55677777777778888888888887776654
Q ss_pred CC
Q 004006 572 HR 573 (779)
Q Consensus 572 ~~ 573 (779)
+.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 43
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.2e-09 Score=104.67 Aligned_cols=451 Identities=14% Similarity=0.069 Sum_probs=266.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC
Q 004006 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (779)
+-++.+...|++++|.+...+++..+ .-+...+..-+-++.+.+.|++|+++.+.-... ..+.+-+..-+-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34678889999999999999999875 446777888888889999999999665443221 112222223334445889
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
+.++|+..++-+... +..+...-...+.+.|++++|.++|+.+.+.+.+. +...-..++..- .+...
T Consensus 94 k~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~- 161 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV- 161 (652)
T ss_pred cHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH-
Confidence 999999999833222 44466666788899999999999999998876332 111111111111 11111
Q ss_pred HHHHHCCCCCCHhhHHH---HHHHHHHcCCHHHHHHHHHHHHHCC------CCCC-H------H-HHHHHHHHHHhcCCH
Q 004006 460 ERLKECGFSPSIISYGC---LINLYTKIGKVSKALEVSKVMKSSG------IKHN-M------K-TYSMLINGFLKLKDW 522 (779)
Q Consensus 460 ~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~------~~~~-~------~-~~~~ll~~~~~~~~~ 522 (779)
..+......+ ..+|.. ....+...|++.+|+++++.....+ -..+ . . .-..|..++...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1122222222 224433 3456778899999999998883211 0111 1 1 112244566778999
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCC-----C-----CcccH-HHHHHHH
Q 004006 523 ANVFAVFEDVMRDGLKPDV----VLYNNIIRAFCGMGNMD-RAIHIVKEMQKERHR-----P-----TSRTF-MPIIHGF 586 (779)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~-----~-----~~~~~-~~l~~~~ 586 (779)
++|..+|..+++.... |. +..|.|+.+-....-++ .++..++........ . ..... +.++..|
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887543 43 33344443322222122 222222222111000 0 00011 1122222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK--RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGK 664 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 664 (779)
.+.-+.+.++...... ..| ...+..++..+.+. ..+.++.+++...-+....-.....-.++......|+++.
T Consensus 320 --tnk~~q~r~~~a~lp~--~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPG--MSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred --hhhHHHHHHHHHhCCc--cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2233333333322221 122 34455555444332 2467788888777665422234556667777889999999
Q ss_pred HHHHHH--------HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH----HHhcC
Q 004006 665 AFEYFT--------KLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ--KIPRNTFVYNILIDG----WARRG 730 (779)
Q Consensus 665 a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~----~~~~g 730 (779)
|++++. .+.+.+..|- +...+...+.+.++.+.|..++.+.+.. .-........++++- -.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 6666655554 4456677778888777777777766531 001222444444444 35789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 731 DVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 731 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+-++|..+++++.+. ..+|..+...++.+|... +.++|..+-+.+
T Consensus 473 ~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 473 NEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred chHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999985 356888889999998765 677777765544
|
|
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-13 Score=114.11 Aligned_cols=82 Identities=28% Similarity=0.490 Sum_probs=77.8
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.++..+||||||+..++++.|.++|-+.|+|.+++|.+| +.+..++|||||+|.++++|+-|++.| |+..|-||+|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikil--n~VkLYgrpIr 82 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKIL--NMVKLYGRPIR 82 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchh-hhcccccceeEEEEechhhhHHHHHHH--HHHHhcCceeE
Confidence 345569999999999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred EEecC
Q 004006 228 VKLDD 232 (779)
Q Consensus 228 v~~~~ 232 (779)
|..+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 99876
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-09 Score=116.77 Aligned_cols=362 Identities=11% Similarity=0.078 Sum_probs=203.5
Q ss_pred ccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC
Q 004006 252 GEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIE-PT 330 (779)
Q Consensus 252 g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 330 (779)
|..||... ++-.|...|+++.+.|+. +...+......|++..+++.|..+.-..-+.... --
T Consensus 499 G~iYrd~~--Dm~RA~kCf~KAFeLDat---------------daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 499 GQIYRDSD--DMKRAKKCFDKAFELDAT---------------DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCch---------------hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 44444444 667899999999999886 5566777788888888888888874443332110 01
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...|..+.-.|.+.++...|..-|+...+..+. |...|..++.+|.++|++..|+++|+++...++. +...-+.....
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVM 639 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHH
Confidence 123444455577778888888888888876543 7888888888898889988899888888776443 33344444556
Q ss_pred HHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------HHCCCCCCHhhHHHH
Q 004006 411 QCQTRNMERAEALVRDMEEEG------IDAPIDIYHMMMDGYTIIGNEEKCLIVFERL-------KECGFSPSIISYGCL 477 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~g~~~~~~~~~~l 477 (779)
.|..|.+.+|++.+....... ...-..++..+...+...|-..++..+|++- .......+...|..+
T Consensus 640 ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a 719 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA 719 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 778888888888887776531 1111223333333333344333343333332 222112233334333
Q ss_pred HHHHHHcCCHH------HHHHHHHH-HHHCC--------------------CCCCHHHHHHHHHHHHh--------cCCH
Q 004006 478 INLYTKIGKVS------KALEVSKV-MKSSG--------------------IKHNMKTYSMLINGFLK--------LKDW 522 (779)
Q Consensus 478 i~~~~~~g~~~------~A~~~~~~-m~~~~--------------------~~~~~~~~~~ll~~~~~--------~~~~ 522 (779)
.++|.-.-+.+ .-..++.. ....+ +..+..+|..|+..|.+ ..+.
T Consensus 720 sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 720 SDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 33322211111 00111110 11111 11123444445444433 1233
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMM 602 (779)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 602 (779)
..|+..+.+.++..-. +..+|+.|.-. ...|++.-+...|-+-+..... ...+|..+...+.++.+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhh
Confidence 4677777776654322 56667666554 5556777777766666555444 5566666666777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 603 RRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 603 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
....+. +...|--........|+.-+++.+|..
T Consensus 877 qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 877 QSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 665433 444443333333344545555555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-08 Score=96.94 Aligned_cols=434 Identities=11% Similarity=0.023 Sum_probs=218.2
Q ss_pred hhhhhhHHHHHHHHHHhcCCccHH---HHHHHH--HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh
Q 004006 259 WHKEREWHRREFRKAVETQPENWQ---AVVSAF--ERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHV 333 (779)
Q Consensus 259 ~~~~~~~a~~~f~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 333 (779)
+.+....|...|..+++....... ....+. +....-+...-...+.+|...|+-+.|+..+....... ...-
T Consensus 55 h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~ 131 (564)
T KOG1174|consen 55 KERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPR 131 (564)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchh
Confidence 344446777777777765411000 000000 00011244556667888999999999988877765542 2233
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 334 ~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
-|.|+..+.+.| ..++.+..-+.+++. +.-......++..-.+ .++.+- ..|......++.......+.++
T Consensus 132 inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~~i~~ll~l~v~--g~e~~S---~~m~~~~~~~~~dwls~wika~ 204 (564)
T KOG1174|consen 132 INLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQVIEALLELGVN--GNEINS---LVMHAATVPDHFDWLSKWIKAL 204 (564)
T ss_pred HHHHHHHHHhccccccHHHHhhhHHHHhc--chHHHHHHHHHHHhhc--chhhhh---hhhhheecCCCccHHHHHHHHH
Confidence 455554444433 223333333333331 1111111111111111 111111 1122222222222223333333
Q ss_pred H--hcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 004006 412 C--QTRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS 488 (779)
Q Consensus 412 ~--~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 488 (779)
+ -.++-..|..++--+.... +..++.....+.+++...|+.++|...|++.+..+.- ++.......-.+.+.|+++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHh
Confidence 3 3344444444443333322 4556666777777777777777777777776654211 2222333344455666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004006 489 KALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQ 568 (779)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 568 (779)
....+...+.... +.+...|-.-+..+...+++..|+.+-++.++.... +...+-.-..++...|+.++|.-.|+..+
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 6666655554431 123333434444445566777777776666654322 33444444556666777777777777666
Q ss_pred HcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 569 KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI-LGLV-EKRQMEKAIEILDEMTLAGISPNE 646 (779)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~~~~~~~ 646 (779)
...+. +..+|.-|+.+|.-.|.+.+|.-+-+...+. ..-+..+...+. ..|. .-..-++|.+++++.+.. .|+.
T Consensus 362 ~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 362 MLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred hcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 65433 5566777777777777777766655544432 111334443332 1111 112235666666665543 3432
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 647 -HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 647 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
..-+.+...|...|..+.++.++++.+.. -+|....+.|.+.+...+.+++|+..|......+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33444555566666666666666666553 3566666666666666666666666666666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-08 Score=107.67 Aligned_cols=293 Identities=15% Similarity=0.146 Sum_probs=206.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK--- 378 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~--- 378 (779)
.+..+...|++++|++.++.-... +.-...........|.+.|+.++|..+|..+++.+.. |..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 456778999999999999886654 3324456678889999999999999999999998632 44445555555422
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 379 --MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME-RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 379 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
..+.+....+|+++...- |...+...+...+..-..|. .+...+..+...|++ .+++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 235788889999887764 33333333333333323343 455666777777754 4566666667655555555
Q ss_pred HHHHHHHHHC----C----------CCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 004006 456 LIVFERLKEC----G----------FSPSI--ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN-MKTYSMLINGFLK 518 (779)
Q Consensus 456 ~~~~~~~~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 518 (779)
..++..+... + -.|.. .++..+...|...|++++|++++++.++.. |+ ...|..-...|-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 5666665432 1 12333 344666788889999999999999998873 44 6778888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCccc--------HHHHHHHHHhcC
Q 004006 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRT--------FMPIIHGFARAG 590 (779)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~ 590 (779)
.|++.+|.+.++.....+.. |.+.-+..+..+.+.|+.++|.+++....+.+..+.... ......+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887655 777777788888999999999999998877764322221 133456788889
Q ss_pred CHHHHHHHHHHHHH
Q 004006 591 EMKRALEIFDMMRR 604 (779)
Q Consensus 591 ~~~~a~~~~~~~~~ 604 (779)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 98888887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=97.47 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=70.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.-|||.|||+.+|.++..++|.+||.|..|+|-.. +. .+|-|||.|++..+|++|+..| +|..+.++.+.|.+-
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~-k~---TrGTAFVVYedi~dAk~A~dhl--sg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT-KE---TRGTAFVVYEDIFDAKKACDHL--SGYNVDNRYLVVLYY 92 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecCc-cC---cCceEEEEehHhhhHHHHHHHh--cccccCCceEEEEec
Confidence 38999999999999999999999999999999655 44 4999999999999999999999 999999999999886
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
.+-
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 544
|
|
| >KOG0226 consensus RNA-binding proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.3e-12 Score=110.87 Aligned_cols=90 Identities=22% Similarity=0.409 Sum_probs=81.3
Q ss_pred CCcccchhhhhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhh
Q 004006 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEF 216 (779)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 216 (779)
.++..+...+...+..+||.|.|..+++++.|...|++|-.....++++| +.||+++|||||.|.+..++.+|++.|
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd-kRTgKSkgygfVSf~~pad~~rAmrem-- 252 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMREM-- 252 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhcccccc-ccccccccceeeeecCHHHHHHHHHhh--
Confidence 34555555555666779999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeceEEEEE
Q 004006 217 DGVEFHGRVLTVK 229 (779)
Q Consensus 217 ~g~~~~~~~~~v~ 229 (779)
||..++.|+|+..
T Consensus 253 ~gkyVgsrpiklR 265 (290)
T KOG0226|consen 253 NGKYVGSRPIKLR 265 (290)
T ss_pred cccccccchhHhh
Confidence 9999999999864
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-08 Score=105.97 Aligned_cols=405 Identities=11% Similarity=0.041 Sum_probs=260.7
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHH
Q 004006 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYH 440 (779)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 440 (779)
+..|...|-.|.-+....|+++.+.+.|++....-.. ....|+.+...|...|.-..|..++++.....-.| +...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 5567888888888888899999999999888764322 66788888888888888888888888776653223 333333
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCC
Q 004006 441 MMMDGY-TIIGNEEKCLIVFERLKEC--GF--SPSIISYGCLINLYTKI-----------GKVSKALEVSKVMKSSGIKH 504 (779)
Q Consensus 441 ~l~~~~-~~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~ 504 (779)
+....| ...+..++++.+-.++... +. ......|..+.-+|... -...++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 333333 3566777777776666551 11 11334555555555432 123466777777776542 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 004006 505 NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (779)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 584 (779)
|..+...+.--|+..++.+.|.+...+..+.+..-+...|..|.-.+...+++.+|+.+.+.....-.. |......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhh
Confidence 333333455567778889999998888888766668888888888888889999998888876654221 1111111122
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 585 GFARAGEMKRALEIFDMMRRS---------------------G-------CIPTVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
.-...++.++++.....+... | ......++..+..... -+.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-
Confidence 222344555554443333221 0 0001111211111111 00000000000
Q ss_pred HHHCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 637 MTLAGI--SPN------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 637 m~~~~~--~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
+...-+ .++ ...|......+.+.+..++|...+.+..... ......|...+..+...|.+++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 110001 112 2345566677888889999999998888764 5577778888888889999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHh
Q 004006 709 AQKIPRNTFVYNILIDGWARRGDVWEAAD--LMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWS 775 (779)
Q Consensus 709 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~ 775 (779)
..+ +.+..+..++...+.+.|+..-|.+ ++..+.+.+ ..+...|-.|+..+.+.|+.+.|.+.|.
T Consensus 712 ~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 712 ALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 876 6677789999999999998777777 999998854 2357789999999999999999988775
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-10 Score=125.68 Aligned_cols=217 Identities=12% Similarity=0.100 Sum_probs=114.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH---------ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA---------KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (779)
++++|+.+|++.++.... +...|..+..+|. ..+++++|+..++++.+.++. +..++..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 345666666666654321 3444444444333 123356666666666665444 55566666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+++|+..|++..+.+ +.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 666666666666654 334555666666666666666666666666654322 222222333344556666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004006 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (779)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 569 (779)
+......-+...+..+..+|...|++++|...+.++...... +....+.+...|+..| ++|...++.+.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 554321123344555556666666666666666665443111 2233344444455555 355554444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.6e-09 Score=107.14 Aligned_cols=428 Identities=13% Similarity=0.055 Sum_probs=278.3
Q ss_pred HcCChHHHHHHH----HHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 308 RRGDMHRARQTF----ENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 308 ~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
-..+..+++... .++....+..|...|..+.-++...|+++.+.+.|++.+..-+. ..+.|..+...|.-.|.-.
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s 374 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDS 374 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccch
Confidence 334445554433 23333345567888888888888999999999999988764332 6778899999999999989
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHH-HH-hcCChHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhc--------
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYA-QC-QTRNMERAEALVRDMEEE--GI--DAPIDIYHMMMDGYTII-------- 449 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-------- 449 (779)
.|..++++.......|+..+-..++.. |. +.+.+++++++-.++... +. ......|..+.-+|...
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 999999887766544544444444433 32 567788887777776652 11 22234455555444321
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 450 ---GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVF 526 (779)
Q Consensus 450 ---g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (779)
....+++..+++..+.+.. |..+.-.+.--|+..++++.|.+..++..+.+-..+...|..|...+...+++.+|+
T Consensus 455 eR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 1234677777777765432 333333344557788899999999998888755668888998888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------------------------CCCCccc
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER----------------------------HRPTSRT 578 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------------~~~~~~~ 578 (779)
.+.+...+.-.. |......-+..-...++.++++.....+...- ..-...+
T Consensus 534 ~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 534 DVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 998877654111 22222222233333555555554443332210 0000111
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHCC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 579 FMPIIHGFA-RAGEMKRALEIFDMMRRSG--CIPT------VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTY 649 (779)
Q Consensus 579 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~~--~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 649 (779)
+..+..... +......... +...- ..++ ...|......+.+.+..++|...+.+..... .-....|
T Consensus 613 sr~ls~l~a~~~~~~~se~~----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~ 687 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELK----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVY 687 (799)
T ss_pred hHHHHHHHHhhhhhcccccc----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHH
Confidence 111111111 0000000000 01000 0112 2344555667778888899998888887653 3445567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHH
Q 004006 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA--VTKEMSAQKIPRNTFVYNILIDGWA 727 (779)
Q Consensus 650 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (779)
......+...|..++|.+.|......+ +.++.+..++..++.+.|+-.-|.. ++..+.+.+ +.+...|-.++..+.
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFK 765 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 777777888999999999999999876 5578889999999999998666666 999999988 788999999999999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 004006 728 RRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 728 ~~g~~~~A~~~~~~m~~~ 745 (779)
+.|+.+.|.+.|.-..+.
T Consensus 766 ~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQL 783 (799)
T ss_pred HccchHHHHHHHHHHHhh
Confidence 999999999999988764
|
|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=123.00 Aligned_cols=82 Identities=27% Similarity=0.451 Sum_probs=72.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--eceEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~--~~~~~~v~ 229 (779)
-++|||.+|...+|.||+++|++||.|.+|.|++| +.||.++|||||.|.+.++|.+|+.+|. |-++| ...+|.|.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alh-n~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALH-NQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhh-cccccCCCCcceeec
Confidence 39999999999999999999999999999999999 9999999999999999999999999982 34445 35688888
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+|...+
T Consensus 113 ~Ad~E~ 118 (510)
T KOG0144|consen 113 YADGER 118 (510)
T ss_pred ccchhh
Confidence 886654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-08 Score=94.85 Aligned_cols=292 Identities=9% Similarity=0.008 Sum_probs=215.9
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 446 YTIIGNEEKCLIVFERLKEC-GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN 524 (779)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 524 (779)
.+..++...+...+--+... -++-|+.....+.+.+...|+.++|...|++....+. -+..........+...|+++.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhh
Confidence 34455555555555444332 2455788899999999999999999999999887531 133333444455667889998
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 525 VFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 525 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
...+...+.... +-....|-.-+......+++..|+.+-++.++.+.. +...+..-..++...++.++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 888888877642 123344544555566788899999999998887554 445555555678889999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCCHH
Q 004006 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIM-HGYA-SLGDTGKAFEYFTKLRNEGLELDVF 682 (779)
Q Consensus 605 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~ 682 (779)
..+- +...|.-|+.+|...|++.+|.-+-+..... +..+..+...+. ..|. ...--++|.+++++.+... +.-..
T Consensus 363 Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~ 439 (564)
T KOG1174|consen 363 LAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTP 439 (564)
T ss_pred cchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHH
Confidence 6533 7889999999999999999998877765543 234555555553 3332 2233689999999888764 33455
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
..+.+...|...|+.+++..++++.... .+|....+.|++.+...+.+++|++.|...++.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6788888999999999999999998774 689999999999999999999999999998873
|
|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-12 Score=144.58 Aligned_cols=78 Identities=19% Similarity=0.523 Sum_probs=75.3
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+|||||||.++|+++|+++|++||.|.+|+|++| +.|++++|||||+|.+.++|.+|+..+ |+..+.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~l--n~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETM--NFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeeEEeeccc
Confidence 7999999999999999999999999999999999 889999999999999999999999999 9999999999999975
Q ss_pred C
Q 004006 233 G 233 (779)
Q Consensus 233 ~ 233 (779)
.
T Consensus 79 ~ 79 (562)
T TIGR01628 79 R 79 (562)
T ss_pred c
Confidence 3
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-10 Score=111.09 Aligned_cols=199 Identities=15% Similarity=0.122 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...|...|++++|+..++++.+.. ..+...+..+...|...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3456667777777788888888887777653 22456667777777777777777777777776542 255666677777
Q ss_pred HHccCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
+...|++++|++.|+++..... ......+..++.++...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777765321 1133455556666666666666666666666543 2234455555666666666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (779)
|...+++..+. ...+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666665554 22234444455555555666666655555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-10 Score=110.46 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILG 620 (779)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 620 (779)
...+..+...+...|++++|...++++...... +...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 345555566666666666666666666554322 3344455555555666666666666655554332 34445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 004006 621 LVEKRQMEKAIEILDEMTLAGI-SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699 (779)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (779)
+...|++++|...+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 5555666666666655554311 1122334444445555555555555555555443 2233444455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 700 ALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 700 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
|..+++++.... +.+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555554431 3334444444455555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-09 Score=111.52 Aligned_cols=294 Identities=16% Similarity=0.136 Sum_probs=184.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---
Q 004006 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ--- 413 (779)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 413 (779)
....+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..++++++. |...|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 345567788999999888776554 3334566677888888889999999999988888654 55555555555422
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004006 414 --TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE-KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 414 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 490 (779)
..+.+...++++++...- |.......+.-.+..-..+. .+..++..+...|++ .+|+.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 224667777788776652 33333333322222222232 344455566666654 3566666666655555555
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 004006 491 LEVSKVMKSS----G----------IKHNM--KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (779)
Q Consensus 491 ~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 554 (779)
.+++...... + -.|+. +++..+...|-..|++++|++++++.++..+. .+..|....+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 5555554322 1 12233 34455666777778888888888877776433 356677777778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HH----HH--HHHHHHHHhcCC
Q 004006 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT--VH----TF--NALILGLVEKRQ 626 (779)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~----~~--~~li~~~~~~~~ 626 (779)
|++.+|.+.++.....+.. |...-+-.+..+.++|++++|.+++....+.+..+. .. .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888887777655 655666666677778888888887777766543221 11 11 333457777777
Q ss_pred HHHHHHHHHHHHH
Q 004006 627 MEKAIEILDEMTL 639 (779)
Q Consensus 627 ~~~A~~~~~~m~~ 639 (779)
+..|++.|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-09 Score=115.55 Aligned_cols=437 Identities=14% Similarity=0.118 Sum_probs=254.1
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 317 QTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.++-.+...|+.|+.++|.++|.-|+..|+++.|- +|.-|.-...+-+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999998 8988887777778889999999999999888776
Q ss_pred CCCChhhHHHHHHHHHhcCChHH---HHHHHHHHH----HcCCCCChhhHH--------------HHHHHHHhcCCHHHH
Q 004006 397 ATLNAIIYGNIIYAQCQTRNMER---AEALVRDME----EEGIDAPIDIYH--------------MMMDGYTIIGNEEKC 455 (779)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~----~~~~~~~~~~~~--------------~l~~~~~~~g~~~~a 455 (779)
.+-..+|..|..+|...|++.. .++.+..+. ..|+.....-+- ..+....-.|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999765 222222221 122111111011 111222223333333
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKI-GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (779)
++++..+-... -...+..++.-+... ..+++-..+.+...+ .++..+|.+++..-...|+.+.|..++..|.+
T Consensus 159 lkll~~~Pvsa---~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSA---WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCccc---ccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 33332221110 000111122222222 223444444333333 58999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHH----------------
Q 004006 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI---------------- 598 (779)
Q Consensus 535 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---------------- 598 (779)
.|+..+..-|-.|+-+ .++...++.+++-|...|+.|+..|+..-+..+.++|....+...
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 9998887655555544 888889999999999999999999988766555554432211111
Q ss_pred --------HHH------------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHH
Q 004006 599 --------FDM------------MRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG--IS-PNEHTYTTIMHG 655 (779)
Q Consensus 599 --------~~~------------~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~-~~~~~~~~li~~ 655 (779)
++. ..-.|......+|...+. ....|.-++...+...|..-- .. -+...|..++.-
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 000 000112112222222222 122344444555544443211 01 122233322222
Q ss_pred HHhc----------------------CCHHHHHHHHHHHHHc----------------CC-------CCCHHHHHHHHHH
Q 004006 656 YASL----------------------GDTGKAFEYFTKLRNE----------------GL-------ELDVFTYEALLKA 690 (779)
Q Consensus 656 ~~~~----------------------g~~~~a~~~~~~~~~~----------------~~-------~~~~~~~~~l~~~ 690 (779)
|.+. .+..+..+++...+.. -+ .+-...-+.++..
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 2111 1111111111111000 00 0011123444555
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCcc
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE--GVQPDVHTYTSFINACKCSKSNQ 768 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~l~~a~~~~g~~~ 768 (779)
|+..-+..+++..-++....-+. ..|..||+.+..+.+.++|..+.++.... .+..|..-+..+.+...+.+...
T Consensus 469 l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 55555555555544444433222 56788888888888888888888887543 34566777788888888888888
Q ss_pred hHHHhHhhhc
Q 004006 769 RNGRSWSEAK 778 (779)
Q Consensus 769 ~a~~~~~~m~ 778 (779)
.+..++++|+
T Consensus 546 dl~tiL~e~k 555 (1088)
T KOG4318|consen 546 DLSTILYEDK 555 (1088)
T ss_pred HHHHHHhhhh
Confidence 8888877765
|
|
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=114.17 Aligned_cols=81 Identities=28% Similarity=0.444 Sum_probs=77.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+.++||-||.+++.|.-|-++|.+||.|..|+|++| ..|.++||||||+..+.+.|..||..| ||+.+++|.+.|.|
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD-~ttnkCKGfgFVtMtNYdEAamAi~sL--NGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRD-FTTNKCKGFGFVTMTNYDEAAMAIASL--NGYRLGDRVLQVSF 354 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEec-CCcccccceeEEEecchHHHHHHHHHh--cCccccceEEEEEE
Confidence 459999999999999999999999999999999999 999999999999999999999999999 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7654
|
|
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-12 Score=109.63 Aligned_cols=81 Identities=30% Similarity=0.589 Sum_probs=72.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+..++|||||||.++.+.+++.+|.+||.|.+|.+... .....||||+|++..+|+.||..- +|+.++|-.|+|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygR--dGYdydg~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGR--DGYDYDGCRLRV 77 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC----CCCCCeeEEEecCccchhhhhhcc--cccccCcceEEE
Confidence 45679999999999999999999999999999988543 445789999999999999999988 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+++...+
T Consensus 78 Efprggr 84 (241)
T KOG0105|consen 78 EFPRGGR 84 (241)
T ss_pred EeccCCC
Confidence 9987664
|
|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-13 Score=123.87 Aligned_cols=77 Identities=27% Similarity=0.500 Sum_probs=74.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
-|++|||.++++..|+.|+..|..||+|+++.+-.| ..||++|||+||+|+-++.|+-|++.| ||..++||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqM--Ng~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccc-cccccccceEEEEEeCcHHHHHHHHHh--ccccccCccccccC
Confidence 379999999999999999999999999999999999 999999999999999999999999999 99999999999984
|
|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=135.53 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=72.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~v~ 229 (779)
+++|||||||+++++++|+++|++||.|.+++|++| .+|++||||||+|.+.++|++|++.| ||..+. |+.|.|.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D--~sG~sRGfaFV~F~~~e~A~~Ai~~l--ng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD--FSGQNRGYAFVTFCGKEEAKEAVKLL--NNYEIRPGRLLGVC 133 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC--CCCCccceEEEEeCCHHHHHHHHHHc--CCCeecCCcccccc
Confidence 469999999999999999999999999999999998 67999999999999999999999999 999984 8888887
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
.+.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 764
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-10 Score=104.64 Aligned_cols=229 Identities=13% Similarity=0.139 Sum_probs=140.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 004006 475 GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (779)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 554 (779)
+-|.++|.+.|.+.+|.+.|+...+. .+-..||-.|-.+|.+.++...|+.+|.+-++. +.-|+.....+.+.+..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777666654 345566666667777777777777777666554 112333334455566667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEIL 634 (779)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 634 (779)
++.++|.++|+...+.... +.....++...|.-.++.+-|+..|++++..|.. +...|+.+..+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777776666443 5555566666666667777777777777777665 6666777766666677777777666
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004006 635 DEMTLAGISPNE--HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (779)
Q Consensus 635 ~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (779)
.+....-..++. ..|-.+.......||+..|.+.|+-.+..+ ..+...+|.|.-.-.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 666544332332 345555555555666666666666665543 33455555555555566666666666655544
|
|
| >KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=129.51 Aligned_cols=81 Identities=28% Similarity=0.578 Sum_probs=78.0
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+.+||||+|+++++++|..+|+..|.|.+++++-| +.||+++||||++|.+.+++.+|++.| ||..++||+|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D-~~tG~~~G~~f~~~~~~~~~~~a~~~l--Ng~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYD-RETGKPKGFGFCEFTDEETAERAIRNL--NGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccc-ccCCCcCceeeEecCchhhHHHHHHhc--CCcccCCceEEeecc
Confidence 69999999999999999999999999999999999 999999999999999999999999999 999999999999998
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
..+.
T Consensus 96 ~~~~ 99 (435)
T KOG0108|consen 96 SNRK 99 (435)
T ss_pred cccc
Confidence 6553
|
|
| >smart00362 RRM_2 RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-12 Score=96.28 Aligned_cols=72 Identities=36% Similarity=0.684 Sum_probs=67.5
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+|||+|||..+++++|+++|++||.|..+++..+ + +.++|+|||+|.+.+.|++|+..+ +|..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~-~--~~~~~~~~v~f~~~~~a~~a~~~~--~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD-T--GKSKGFAFVEFESEEDAEKAIEAL--NGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC-C--CCCCceEEEEeCCHHHHHHHHHHh--CCcEECCEEEeeC
Confidence 5899999999999999999999999999999987 3 788999999999999999999999 9999999999873
|
|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-12 Score=139.97 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=79.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+++|||+||+.++|+++|+++|++||.|.+++|+.| .+|+++|||||+|.+.++|.+|+..+ ||..++|++|.|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d--~~g~~~g~gfV~f~~~~~A~~A~~~~--~g~~~~gk~l~V 358 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD--EKGVSRGFGFVCFSNPEEANRAVTEM--HGRMLGGKPLYV 358 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC--CCCCcCCeEEEEeCCHHHHHHHHHHh--cCCeeCCceeEE
Confidence 45668999999999999999999999999999999997 67999999999999999999999999 999999999999
Q ss_pred EecCCcchh
Q 004006 229 KLDDGRRLK 237 (779)
Q Consensus 229 ~~~~~~~~~ 237 (779)
.++..+..+
T Consensus 359 ~~a~~k~~~ 367 (562)
T TIGR01628 359 ALAQRKEQR 367 (562)
T ss_pred EeccCcHHH
Confidence 999776543
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=134.57 Aligned_cols=82 Identities=26% Similarity=0.467 Sum_probs=77.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
...+|||||||..+|+++|+++|+.||.|..+.|+.| ..+|+++|||||+|.+.++|..|+..| ||..|+|+.|+|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l--~g~~~~~~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAAL--NGKDTGDNKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3459999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++...
T Consensus 371 ~a~~~ 375 (509)
T TIGR01642 371 RACVG 375 (509)
T ss_pred ECccC
Confidence 98544
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >smart00360 RRM RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-12 Score=95.30 Aligned_cols=71 Identities=37% Similarity=0.667 Sum_probs=66.9
Q ss_pred eccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 156 VGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 156 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
|+|||..+++++|+++|++||.|..+.+..+ +.+++++|||||+|.+.++|.+|+..+ +|..++|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~-~~~~~~~~~a~v~f~~~~~a~~a~~~~--~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRD-KDTGKSKGFAFVEFESEEDAEKALEAL--NGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeC-CCCCCCCceEEEEeCCHHHHHHHHHHc--CCCeeCCcEEEeC
Confidence 6899999999999999999999999999988 668999999999999999999999999 9999999999874
|
|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=122.44 Aligned_cols=93 Identities=27% Similarity=0.423 Sum_probs=81.1
Q ss_pred hccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh----hhCCceee
Q 004006 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV----EFDGVEFH 222 (779)
Q Consensus 147 ~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~----~~~g~~~~ 222 (779)
....+.+|||.|||+++|+++|.+.|++||.|.++.|+.+ +.||+++|+|||.|.+...++.||.+. +.-+..|+
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 3445579999999999999999999999999999999999 999999999999999999999999875 22337789
Q ss_pred ceEEEEEecCCcchhhHH
Q 004006 223 GRVLTVKLDDGRRLKNKA 240 (779)
Q Consensus 223 ~~~~~v~~~~~~~~~~~~ 240 (779)
||.++|..+-.|....++
T Consensus 367 GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 367 GRLLKVTLAVTRKEAADM 384 (678)
T ss_pred ccEEeeeeccchHHHHHH
Confidence 999999998777544443
|
|
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-12 Score=134.62 Aligned_cols=81 Identities=28% Similarity=0.521 Sum_probs=77.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||+|||..+|+++|+++|++||.|..|+++.| ..+|+++|||||+|.+.++|.+|+..| ||..|.|++|+|.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~~A~~~l--~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRD-PETGRSKGFGFIQFHDAEEAKEALEVM--NGFELAGRPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhc--CCcEECCEEEEEEE
Confidence 469999999999999999999999999999999999 888999999999999999999999999 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
+...
T Consensus 263 a~~~ 266 (457)
T TIGR01622 263 AQDS 266 (457)
T ss_pred ccCC
Confidence 8644
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >smart00361 RRM_1 RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=92.60 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=56.1
Q ss_pred hHHHHHHHh----ccCCeeEEE-EecCCCCC--CCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 165 KHLVMEFFR----QFGPIKNVI-LIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 165 ~~~l~~~f~----~~g~i~~~~-~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+++|+++|+ +||.|.++. |+.+ +.+ |+++|||||+|.+.++|.+|+..| ||..+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~-~~~~~~~~rG~~fV~f~~~~dA~~A~~~l--~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYID-NVGYENHKRGNVYITFERSEDAARAIVDL--NGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeC-CCCCCCCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEeC
Confidence 578889998 999999995 7777 555 999999999999999999999999 9999999999873
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-09 Score=97.20 Aligned_cols=416 Identities=13% Similarity=0.070 Sum_probs=214.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY-SIIVGGFA 377 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~ 377 (779)
+.+.+..+.+..++.+|++++..-.++.. .+......+..+|....++..|.++|+.+... .|...-| ..-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 45566666777778888888877777632 26666777777777778888888888877664 2333333 23345556
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (779)
+.+.+.+|+++...|.... ..-..+...-..+....+++..+..+++++...| +..+.+.......+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7777778887777765431 0011111111222345566666666666655332 34444555555667777777777
Q ss_pred HHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 458 VFERLKEC-GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKT----YSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 458 ~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
-|....+. |+. ....|+..+ +..+.|+++.|++...+++++|++-.... -.-.+++- ..|+ -+.+....
T Consensus 166 kFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~Sa 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQSA 239 (459)
T ss_pred HHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHHH
Confidence 77776654 444 334554433 44566777777777777777664321110 00000000 0000 00000000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE-RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (779)
Q Consensus 533 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 611 (779)
-...+|.-...+.+.|+++.|.+.+-+|.-. ....|..|...+.-. ...+++.+..+-+.-+...++- -.
T Consensus 240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ 310 (459)
T KOG4340|consen 240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PP 310 (459)
T ss_pred -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-Ch
Confidence 0123444455567788888888887777533 234456665544321 2234455555555555555443 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGI-SPNEHTYTTIMHGYAS-LGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 689 (779)
.||..++..||++.-++-|-+++.+-...-. ..+...|+ |++++.- .-..+++++-+..+...- ....-...+.
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~ 386 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQ 386 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6777777788888888888777764322111 11222232 3333322 233455554444432210 0000000111
Q ss_pred HHH-HcCC----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 690 ACC-KSGR----MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 690 ~~~-~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.-. +..+ +..+.+-+++..+. -..+.-+..+.|++..++..+.++|+.-.+
T Consensus 387 vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 387 VQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 111 1111 11111122222211 112334456677888999999999988776
|
|
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-12 Score=105.99 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=77.8
Q ss_pred hhccccceEEeccCCCcCChHHHHHHHhccCCeeEE-EEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 146 ~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
+..+.+.++|||||.+.+++..|...|+.||.+... +|++| ..||.++|||||.|++.+.+.+|+..+ ||..++.+
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~--ngq~l~nr 167 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSM--NGQYLCNR 167 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHh--ccchhcCC
Confidence 334555799999999999999999999999998754 78888 899999999999999999999999999 99999999
Q ss_pred EEEEEecCCc
Q 004006 225 VLTVKLDDGR 234 (779)
Q Consensus 225 ~~~v~~~~~~ 234 (779)
+|+|+++..+
T Consensus 168 ~itv~ya~k~ 177 (203)
T KOG0131|consen 168 PITVSYAFKK 177 (203)
T ss_pred ceEEEEEEec
Confidence 9999998544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-09 Score=111.04 Aligned_cols=237 Identities=17% Similarity=0.170 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--C
Q 004006 507 KTYSMLINGFLKLKDWANVFAVFEDVMRD-----GLK-PDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKE-----R--H 572 (779)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~ 572 (779)
.+...|...|...|+++.|+.++++.++. |.. +... ..+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666655443 211 1221 2233555666777777777777766442 1 1
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 004006 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS-----GCI-PT-VHTFNALILGLVEKRQMEKAIEILDEMTLA---GI 642 (779)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~ 642 (779)
.--..++..|..+|.+.|++++|...++.+.+. +.. +. ...++.++..|...+++++|..++++..+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112234555666777777777777776655431 111 12 234566677788888999999888865431 11
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--
Q 004006 643 SP----NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG----L---ELDVFTYEALLKACCKSGRMQSALAVTKEMSA-- 709 (779)
Q Consensus 643 ~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 709 (779)
.. -..+++.|...|...|++++|.+++++++... . .-....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 23578899999999999999999999987541 1 12245678888899999999988888886643
Q ss_pred --CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 710 --QK--IPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 710 --~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
.| .+....+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 22334578899999999999999999988876
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-09 Score=92.77 Aligned_cols=199 Identities=15% Similarity=0.038 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
+..-|.-.|.+.|++..|.+.+++.++.+. .+..+|..+...|.+.|+.+.|.+-|++.+..... +-.+.|.-...+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 345578899999999999999999999853 35678999999999999999999999999987533 7889999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHAT-LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (779)
..|++++|...|+++...-.. .-..+|.+++.+..+.|+++.|.+.|++..+.+ +........+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999999886422 245689999999999999999999999999875 344566778889999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 457 IVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 457 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
..+++....+. .+..+.-..|.+..+.|+.+.+.++=.++...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999988765 68888888889999999999888877776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-09 Score=113.07 Aligned_cols=236 Identities=14% Similarity=0.177 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C
Q 004006 473 SYGCLINLYTKIGKVSKALEVSKVMKSS-----GI-KHNMK-TYSMLINGFLKLKDWANVFAVFEDVMRD-----GLK-P 539 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~-~ 539 (779)
+...+...|...|+++.|..+++...+. |. .+... ..+.+...|...+++++|..+|+++... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444566666666666666666555432 10 11111 2233556667777777777777776542 221 1
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----C-CCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 004006 540 -DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER-----H-RPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRS-----G 606 (779)
Q Consensus 540 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 606 (779)
-..+++.|..+|++.|++++|..+++...+.- . .+. ...++.++..|...+++++|..+++...+. |
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 13456666777788888777776666543321 1 111 122455666788888999998888766542 2
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 004006 607 CI--PTVHTFNALILGLVEKRQMEKAIEILDEMTLAG-------ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE-- 675 (779)
Q Consensus 607 ~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-- 675 (779)
.. --..+++.|...|...|++++|.+++++++... ..-....++.|...|.+.+++++|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 124578899999999999999999999876431 1122456788889999999999998888876543
Q ss_pred --CC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 676 --GL--ELDVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 676 --~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
|. +....+|..|...|...|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 2345689999999999999999999988776
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-08 Score=99.56 Aligned_cols=420 Identities=14% Similarity=0.074 Sum_probs=257.3
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
....|++ ++|+..|-+++..+|. |...|..-..+|+..|+|++|++=-.+-++...
T Consensus 12 a~s~~d~---------~~ai~~~t~ai~l~p~---------------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p 67 (539)
T KOG0548|consen 12 AFSSGDF---------ETAIRLFTEAIMLSPT---------------NHVLYSNRSAAYASLGSYEKALKDATKTRRLNP 67 (539)
T ss_pred hcccccH---------HHHHHHHHHHHccCCC---------------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3456777 9999999999999986 556677788999999999999988877777632
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
. -...|+....++.-.|++++|+..|.+-++... -+...++-+..++.. +.. +.+.|. +...|..+
T Consensus 68 ~-w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~--~~~-~~~~~~---------~p~~~~~l 133 (539)
T KOG0548|consen 68 D-WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLE--DYA-ADQLFT---------KPYFHEKL 133 (539)
T ss_pred c-hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhH--HHH-hhhhcc---------CcHHHHHh
Confidence 2 346899999999999999999999999988642 256667777777611 111 111111 12222222
Q ss_pred HHH-----HHhcCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHH-----------------------HH
Q 004006 408 IYA-----QCQTRNMERAEALVRDMEEEGIDAPIDI---YHMMMDGYTIIGNEEK-----------------------CL 456 (779)
Q Consensus 408 ~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~-----------------------a~ 456 (779)
..- +...-.+...++.+ ..+ +.+... .-.++.+.......+. ..
T Consensus 134 ~~~p~t~~~~~~~~~~~~l~~~----~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (539)
T KOG0548|consen 134 ANLPLTNYSLSDPAYVKILEII----QKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGF 208 (539)
T ss_pred hcChhhhhhhccHHHHHHHHHh----hcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCC
Confidence 111 11111111111111 100 000000 0011111110000000 00
Q ss_pred HHHHHHHH-CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 457 IVFERLKE-CGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 457 ~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
....++.+ ....--..-...+.+...+..++..|++-+....... -+...++....+|...|.+.+.....+...+.
T Consensus 209 ~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 209 PIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred CccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00000000 0000011224457777888888999999998888765 46677778888899999999988888887776
Q ss_pred CCCCCHHHHHH-------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 536 GLKPDVVLYNN-------IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCI 608 (779)
Q Consensus 536 g~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 608 (779)
|.. ...-|+. +..+|.+.++++.++..|.+.......|+ ...+....++++.......-.+..
T Consensus 287 gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe 356 (539)
T KOG0548|consen 287 GRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPE 356 (539)
T ss_pred hHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChh
Confidence 543 2223333 33456667788899999988665433322 233445566666665555443332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004006 609 PTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALL 688 (779)
Q Consensus 609 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 688 (779)
. ..-...-.+.+++.|++..|+..|.+++..+ +-|...|....-+|.++|.+..|+.-.+..++.. +.....|.-=+
T Consensus 357 ~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg 433 (539)
T KOG0548|consen 357 K-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKG 433 (539)
T ss_pred H-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 2 2222233677888999999999999998876 6677889999999999999999998888888874 33444555556
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
.++....++++|++.|++..+.+ +-+......+.+++
T Consensus 434 ~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 66666778999999999988876 33333334333333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.4e-09 Score=95.37 Aligned_cols=394 Identities=12% Similarity=0.042 Sum_probs=233.9
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHH-HHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 004006 288 FERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTN-LIHAYAVGRDMEEALSCVRKMKEEGIEMSL 366 (779)
Q Consensus 288 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 366 (779)
+.+....+......|..+|....++..|-.+|+.+... .|...-|.. -...+.+.+.+..|+.+...|... ++.
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L 110 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PAL 110 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHH
Confidence 33334447888899999999999999999999999876 444444432 235566889999999999888653 122
Q ss_pred hH--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 367 VT--YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (779)
Q Consensus 367 ~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (779)
.. ...-.......+++..+..+.+..... -+..+.....-...+.|++++|.+-|....+-+---....|+. .-
T Consensus 111 ~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYni-AL 186 (459)
T KOG4340|consen 111 HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNL-AL 186 (459)
T ss_pred HHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHH-HH
Confidence 22 222222334678888888888776532 2666677777777899999999999999988653334555654 44
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004006 445 GYTIIGNEEKCLIVFERLKECGFSPSII----SYGCLINLYTKIGKV-SKALEVSKVMKSSGIKHNMKTYSMLINGFLKL 519 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 519 (779)
+..+.|+++.|++...+++++|++-... ...-.+++- ..|+. ..+... -...+|.-...+.+.
T Consensus 187 aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sa-----------l~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 187 AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSA-----------LVEAFNLKAAIEYQL 254 (459)
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchHHHHHHH-----------HHHHhhhhhhhhhhc
Confidence 5667899999999999999998752211 111111110 01111 111111 123445555567788
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 004006 520 KDWANVFAVFEDVMRD-GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI 598 (779)
Q Consensus 520 ~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 598 (779)
++++.|.+.+-+|.-. ..+.|.+|...+.-.- -.+++.+..+-+.-+....+. ...||..++-.||++.-++.|-++
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHH
Confidence 9999999888887533 3445777776654332 234455555555555666553 567888888899999999998888
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 004006 599 FDMMRRSGCI-PTVHTFNALILGLVE-KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD---TGKAFEYFTKLR 673 (779)
Q Consensus 599 ~~~~~~~~~~-~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~ 673 (779)
+.+-...-.. .+...|+ |+.++.- .-..++|++-++.+...- .-.......-+.--....+ ..++++-+++.+
T Consensus 333 LAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~L 410 (459)
T KOG4340|consen 333 LAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETL 410 (459)
T ss_pred HhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7654322111 2334444 3344443 345667766655443210 0000011111111111111 122223333333
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004006 674 NEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (779)
Q Consensus 674 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (779)
+. -.-+...-.+.|.+..++..++++|..-.+.
T Consensus 411 E~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 411 EK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22 1113334455677788899999999887764
|
|
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-11 Score=131.45 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=75.3
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
....+|||+|||..+++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|+. + +|..+.|++|.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l--~g~~~~g~~i~v 162 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-L--TGQMLLGRPIIV 162 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-h--CCCEECCeeeEE
Confidence 34569999999999999999999999999999999999 8899999999999999999999996 6 999999999999
Q ss_pred EecCC
Q 004006 229 KLDDG 233 (779)
Q Consensus 229 ~~~~~ 233 (779)
..+..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 87643
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=129.71 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=71.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
++.|||||||+++++++|+++|++||.|.+|+++++ +|||||+|++.++|.+|++.+..|+..++|++|+|.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 459999999999999999999999999999999976 7999999999999999998754488999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+..+.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 97653
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-07 Score=97.98 Aligned_cols=240 Identities=17% Similarity=0.150 Sum_probs=141.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHH----------HHHcCC---------
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRK----------MKEEGI--------- 362 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----------m~~~g~--------- 362 (779)
|=..|-..|.|++|.++-+.--+-. -..+|.....-+-..+|++.|++.|++ |+....
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 3345556777887777665433222 224566666666666777777766654 222111
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 363 EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442 (779)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (779)
..|...|..-...+-..|+.+.|+.+|..+.. |.+++++.|-.|+.++|.++-++ ..|..+.+.|
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhl 973 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHL 973 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHH
Confidence 12455666666667778889999988887653 77888999999999999888665 3366778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CC--CCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 443 MDGYTIIGNEEKCLIVFERLKECG--FS--PSIISYGCLINLYTKIGK--VSKALEVSKVMKSSGIKHNMKTYSMLINGF 516 (779)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 516 (779)
.+.|...|++.+|...|-+..... ++ .....-..|.+.+...|. .-.|.++|++.- . .+...+..|
T Consensus 974 aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLY 1045 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLY 1045 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHH
Confidence 999999999999999998765320 00 000000112222222222 222333343221 1 122234456
Q ss_pred HhcCCHHHHHHHHH--------HHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004006 517 LKLKDWANVFAVFE--------DVMRDG--LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (779)
Q Consensus 517 ~~~~~~~~a~~~~~--------~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (779)
-+.|.+.+|+++-= +++..+ ...|....+.....++...++++|..++...
T Consensus 1046 HkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1046 HKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67777777665421 122222 2335566666666677777777777666544
|
|
| >PF13893 RRM_5: RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=85.05 Aligned_cols=56 Identities=29% Similarity=0.635 Sum_probs=51.0
Q ss_pred HHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 168 VMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 168 l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
|.++|++||.|.++.+..+ + +|+|||+|.+.++|..|++.| ||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~-~-----~~~a~V~f~~~~~A~~a~~~l--~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK-K-----RGFAFVEFASVEDAQKAIEQL--NGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT-S-----TTEEEEEESSHHHHHHHHHHH--TTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEEEC
Confidence 6789999999999999876 1 599999999999999999999 999999999999985
|
(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A .... |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-07 Score=87.16 Aligned_cols=317 Identities=11% Similarity=0.028 Sum_probs=165.5
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDI-YHMMMD 444 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~ 444 (779)
+.-..-+...+.-.|++.+|+.-|..+.+-++. +..+++.-...|...|+-.-|+.-|.+.++. +||... -..-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 334445556666667777777777777665333 4445555566677777777777766666664 344322 122234
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 445 GYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN 524 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 524 (779)
.+.+.|.++.|..-|+.+++.... .. ....++.+.-..++-..+ ...+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s--~~---~~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS--NG---LVLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC--cc---hhHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhh
Confidence 566777777777777777664321 10 111111111111111111 112222334455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 525 VFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 525 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
|+.....+++..+ .|...+..-..+|...|+...|+.-++...+.... +...+--+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555555322 24445555555555555555555555554444333 333333444455555555555555555555
Q ss_pred CCCCCCHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Q 004006 605 SGCIPTVHTFNAL-------------ILGLVEKRQMEKAIEILDEMTLAGISPNEH---TYTTIMHGYASLGDTGKAFEY 668 (779)
Q Consensus 605 ~~~~~~~~~~~~l-------------i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~ 668 (779)
.+ ||...+... +......++|.++++..+...+........ .+..+-.++...+++.+|+..
T Consensus 252 ld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 LD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred cC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 32 222211100 112234556666666666655543221122 233344555666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 669 FTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
..++++.. +.|+.++.--..+|.....+++|+.-+++..+.+
T Consensus 330 C~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 330 CKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 77777764 4457777777777777777777777777776654
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-11 Score=110.96 Aligned_cols=71 Identities=27% Similarity=0.594 Sum_probs=68.2
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+|||||||..+++.+|+.+|++||.|.+|+|++ .||||-.++...+..||+.| ||++|+|..|+|+-++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK---------NYgFVHiEdktaaedairNL--hgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK---------NYGFVHIEDKTAAEDAIRNL--HGYTLHGVNINVEASK 72 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec---------ccceEEeecccccHHHHhhc--ccceecceEEEEEecc
Confidence 899999999999999999999999999999995 49999999999999999999 9999999999999988
Q ss_pred Cc
Q 004006 233 GR 234 (779)
Q Consensus 233 ~~ 234 (779)
++
T Consensus 73 sK 74 (346)
T KOG0109|consen 73 SK 74 (346)
T ss_pred cc
Confidence 77
|
|
| >cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=90.13 Aligned_cols=74 Identities=32% Similarity=0.663 Sum_probs=68.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+|+|+|||..+++++|+++|+.||.|..+.+..+ +.+ +++|+|||+|.+.++|..|+..+ +|..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~-~~~-~~~~~~~v~f~s~~~a~~a~~~~--~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRD-KDT-KSKGFAFVEFEDEEDAEKALEAL--NGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeC-CCC-CcceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987 433 77899999999999999999999 99999999999864
|
This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). |
| >KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-11 Score=112.98 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=79.6
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..+...|||..|++-+|+++|+-+|++||.|.+|.|++| +.||.+-.||||+|++.++..+|.-.| +...|+.|.|+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD-~ktgdsLqyaFiEFen~escE~AyFKM--dNvLIDDrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRD-RKTGDSLQYAFIEFENKESCEQAYFKM--DNVLIDDRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEec-ccccchhheeeeeecchhhHHHHHhhh--cceeeccceEE
Confidence 356679999999999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|.|+.+.
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9998665
|
|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-11 Score=125.10 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=69.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc--CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
...+|||+||++.+++++|+++|++| |.|++|+++ +|||||+|++.++|.+|++.| ||..|+|+.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---------rgfAFVeF~s~e~A~kAi~~l--nG~~i~Gr~I~ 300 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---------RDYAFVHFEDREDAVKAMDEL--NGKELEGSEIE 300 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---------cCeEEEEeCCHHHHHHHHHHh--CCCEECCEEEE
Confidence 34689999999999999999999999 999999876 469999999999999999999 99999999999
Q ss_pred EEecCCcc
Q 004006 228 VKLDDGRR 235 (779)
Q Consensus 228 v~~~~~~~ 235 (779)
|++++++.
T Consensus 301 V~~Akp~~ 308 (578)
T TIGR01648 301 VTLAKPVD 308 (578)
T ss_pred EEEccCCC
Confidence 99998764
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-08 Score=88.94 Aligned_cols=209 Identities=14% Similarity=0.053 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004006 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (779)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 622 (779)
+...|.-.|...|+...|..-+++.++.++. +..+|..+...|.+.|+.+.|.+-|++....... +..+.|+...-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445667888899999999999999888766 7778888888999999999999999999887665 7788899998899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004006 623 EKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSAL 701 (779)
Q Consensus 623 ~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 701 (779)
..|++++|...|++....-..+ -..+|..+..+..+.|+.+.|.++|++.++.. +........+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988653222 24688888888889999999999999999875 445667788888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004006 702 AVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSF 757 (779)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 757 (779)
.+++.....+ ..+..++-..|..-.+.|+.+.+-++=.++.+. -|....|-.+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 9999987766 488889888899999999998888887777763 4565555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-08 Score=98.02 Aligned_cols=218 Identities=14% Similarity=0.029 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
+.++..|.+++...+.+- .-....|..+...|.+.|++++|+..|+++++... .+...|+.+...+..
T Consensus 43 e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 43 EVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQ 110 (296)
T ss_pred HHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 788888888887544200 01234577788889999999999999999998753 367889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (779)
.|++++|.+.|++.++.... +..+|..++.++...|++++|++.|++..+..+. +.. .......+...++.++|.+.
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHH
Confidence 99999999999999886432 5778888888899999999999999999887543 221 12222234456788899988
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC---GF--SP-SIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
|.+..... .++...+ . ..+...|+...+ ..+..+.+. .. .+ ....|..+...+.+.|++++|+..|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 87655432 2222221 2 222334544333 244444321 00 01 2345677777777777777777777777
Q ss_pred HHCC
Q 004006 498 KSSG 501 (779)
Q Consensus 498 ~~~~ 501 (779)
.+.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 7654
|
|
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-11 Score=120.61 Aligned_cols=82 Identities=29% Similarity=0.569 Sum_probs=77.2
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+||||||.+++++++|+.+|+.||.|+.|.+.+| ..||+++|||||+|.+.+.|++|++.| ||..|-||.|+|....
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ar~a~e~l--ngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKD-SETGRSKGFGFITFVNKEDARKALEQL--NGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccc-cccccccCcceEEEecHHHHHHHHHHh--ccceecCceEEEEEee
Confidence 4999999999999999999999999999999999 789999999999999999999999999 9999999999999877
Q ss_pred Ccchh
Q 004006 233 GRRLK 237 (779)
Q Consensus 233 ~~~~~ 237 (779)
.+...
T Consensus 357 ~r~~~ 361 (549)
T KOG0147|consen 357 ERVDT 361 (549)
T ss_pred eeccc
Confidence 66533
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-08 Score=100.32 Aligned_cols=218 Identities=14% Similarity=0.022 Sum_probs=125.5
Q ss_pred CChHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 004006 310 GDMHRARQTFENMRARG-IEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (779)
Q Consensus 310 g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (779)
++.+.++..+.+++... ..+ ....|..+...|...|++++|...|++.++... .+...|+.+...|...|++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566677776666532 111 124466666777777777777777777777643 25677777777777777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
..|+++.+..+. +..+|..++.++...|++++|++.|++..+.+ |+..........+...++.++|+..|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777776544 56677777777777777777777777777653 222111112222344566777777776544321
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 467 FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS---GI---KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG 536 (779)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 536 (779)
.++. |. ....+...|+...+ +.+..+.+. .. ......|..+...+.+.|++++|...|++..+..
T Consensus 196 -~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 21 12222334444333 233333321 00 0122456666666666677777777766666543
|
|
| >COG0724 RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-11 Score=120.44 Aligned_cols=79 Identities=33% Similarity=0.660 Sum_probs=76.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++||||||+..+|+++|+++|.+||.|..+++..| +.+|+++|||||+|.+.+++..|+..+ +|..|.|++|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d-~~~~~~~g~~~v~f~~~~~~~~a~~~~--~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRD-RETGKSRGFAFVEFESEESAEKAIEEL--NGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeec-cccCccCceEEEEecCHHHHHHHHHHc--CCCeECCceeEeec
Confidence 469999999999999999999999999999999999 789999999999999999999999999 99999999999999
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
+.
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 64
|
|
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-10 Score=122.06 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=71.1
Q ss_pred ccceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++|||+||++ .+|+++|+++|+.||.|.+|+|+++ + +|||||+|.+.++|..|+..| ||..|.|++|+|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~-----~g~afV~f~~~~~A~~Ai~~l--ng~~l~g~~l~v 345 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-K-----KETALIEMADPYQAQLALTHL--NGVKLFGKPLRV 345 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCEECCceEEE
Confidence 346999999998 6999999999999999999999986 2 699999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.+++..
T Consensus 346 ~~s~~~ 351 (481)
T TIGR01649 346 CPSKQQ 351 (481)
T ss_pred EEcccc
Confidence 998654
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.4e-06 Score=81.80 Aligned_cols=444 Identities=12% Similarity=0.117 Sum_probs=222.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
|..+|+.||+-+..+ ..++++.+++.+... +.-+...|..-|......++++....+|.+.+..- .+...|..-+.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 777888898887655 899999999999865 34456789999999999999999999999987652 45666766665
Q ss_pred HHHcc-CCH----HHHHHHHHHHHHc-CCCC-ChhhHHHHHHH---------HHhcCChHHHHHHHHHHHHcCCCCChhh
Q 004006 375 GFAKM-GNA----EAADHWFEEAKER-HATL-NAIIYGNIIYA---------QCQTRNMERAEALVRDMEEEGIDAPIDI 438 (779)
Q Consensus 375 ~~~~~-g~~----~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 438 (779)
--.+. |+. +.-.+.|+...+. |..+ ....|...+.. |..+.+++...+++.++...-..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~----- 169 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH----- 169 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-----
Confidence 44332 222 2233445544432 2111 22234433332 22334455555666665543211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHH---------
Q 004006 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS--SGIKHNMK--------- 507 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~--------- 507 (779)
++++..+-|+...+. .|..+-..++. -+...+..|.++++++.. +|+..+..
T Consensus 170 ------------nlEkLW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~ 232 (656)
T KOG1914|consen 170 ------------NLEKLWKDYEAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKD 232 (656)
T ss_pred ------------cHHHHHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChH
Confidence 111111111111110 01111000000 011122223333332221 11111100
Q ss_pred ------HHHHHHHHHHhcCC--------HHHHHHHHHHHHH-CCCCCCHHHH-----HHHHHHHHhCCC-------HHHH
Q 004006 508 ------TYSMLINGFLKLKD--------WANVFAVFEDVMR-DGLKPDVVLY-----NNIIRAFCGMGN-------MDRA 560 (779)
Q Consensus 508 ------~~~~ll~~~~~~~~--------~~~a~~~~~~~~~-~g~~~~~~~~-----~~l~~~~~~~g~-------~~~A 560 (779)
.|..+|.--..++. ...+.-++++.+. .+..|+.... ...-..+...|+ .+++
T Consensus 233 e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 233 EIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence 01111111100000 0001111111111 0111111100 000012222332 3445
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 561 IHIVKEMQKERHRPTSRTFMPIIHGFARA---GEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 637 (779)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (779)
..+++..+..-..-+..+|..+.+.-... ...+....++++++..-...-..+|..+++.-.+..-++.|..+|.++
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 55555544432222333333322211111 124555566666554322222345666777666777778888888888
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-
Q 004006 638 TLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN- 715 (779)
Q Consensus 638 ~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 715 (779)
.+.+..+ +...++.++..|| .+|.+-|.++|+--+.. +..+..--...++-+...|+-..+..+|++....++.++
T Consensus 393 R~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred hhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 8766555 5556666666655 46777888888766554 233444556677777788888888888888877654444
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCc
Q 004006 716 -TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ----PDVHTYTSFINACKCSKSN 767 (779)
Q Consensus 716 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~----pd~~~~~~l~~a~~~~g~~ 767 (779)
..+|+.++.-=...|+...+.++-+++... ++ +....-..+++-|.-.+..
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhcccc
Confidence 357888888778888888888887776543 22 2222344555555555544
|
|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=110.89 Aligned_cols=88 Identities=22% Similarity=0.410 Sum_probs=82.5
Q ss_pred hhhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 145 ~~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
..+.+++..+||++||.+.-+.+|-..|..||.|.+.++..| +.||-+++||||.|++..+|..||..| ||..++++
T Consensus 418 q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfid-k~tnlskcfgfvSyen~~sa~~aI~am--ngfQig~K 494 (510)
T KOG0144|consen 418 QVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFID-KVTNLSKCFGFVSYENAQSAQNAISAM--NGFQIGSK 494 (510)
T ss_pred cccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEe-cccCHhhhcCcccccchhhhHHHHHHh--cchhhccc
Confidence 345667789999999999999999999999999999999999 999999999999999999999999999 99999999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
+++|.+.+++.
T Consensus 495 rlkVQlk~~~~ 505 (510)
T KOG0144|consen 495 RLKVQLKRDRN 505 (510)
T ss_pred cceEEeeeccC
Confidence 99999987663
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=80.54 Aligned_cols=50 Identities=36% Similarity=0.621 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 714 RNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888887753
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-05 Score=83.79 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVN--YYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAY 341 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (779)
..|.....+.+.+.|+ .. |...+. .+.+.|+.++|..+++.....+.. |..+...+-.+|
T Consensus 26 kkal~~~~kllkk~Pn---------------~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y 87 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPN---------------AL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVY 87 (932)
T ss_pred HHHHHHHHHHHHHCCC---------------cH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHH
Confidence 6777777888887775 22 233333 345899999999999998777655 889999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CC----
Q 004006 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT-RN---- 416 (779)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~---- 416 (779)
...+..++|..+|++.... -|+......+..+|++.+.+.+-.++=-++-+.-+. +...+=+++..+.+. ..
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCccc
Confidence 9999999999999999886 367888899999999999887755544444443222 344443444444332 11
Q ss_pred -----hHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 417 -----MERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFE-RLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 417 -----~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
..-|.+.++.+.+.+ ...+..-.......+...|++++|++++. .+.+.-..-+...-+.-++.+...+++.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 234556666666654 21222223333456677889999999984 44443333355555677888999999999
Q ss_pred HHHHHHHHHHCC
Q 004006 490 ALEVSKVMKSSG 501 (779)
Q Consensus 490 A~~~~~~m~~~~ 501 (779)
..++..++...+
T Consensus 245 l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 245 LFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhC
Confidence 999999988876
|
|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-11 Score=116.72 Aligned_cols=81 Identities=28% Similarity=0.531 Sum_probs=77.8
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||++||+.++.++|.++|+.+|+|..+.++.+ +.++.+||||||+|.-.+++++|++.. ++..|+||.|+|..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~-~gs~~~RGfgfVtFam~ED~qrA~~e~--~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTN-KGSSEKRGFGFVTFAMEEDVQRALAET--EQSKFEGRILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecC-CCcccccCccceeeehHhHHHHHHHHh--hcCcccceecccccc
Confidence 59999999999999999999999999999999999 888999999999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
+.|.
T Consensus 83 ~~R~ 86 (678)
T KOG0127|consen 83 KKRA 86 (678)
T ss_pred cccc
Confidence 7775
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-07 Score=95.99 Aligned_cols=202 Identities=12% Similarity=0.034 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHH--
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIE-PTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI-- 371 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-- 371 (779)
...|..+...+...|+..++.+.+.+..+.... .+. .........+...|++++|.+++++.++.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 445666777777888888887777776654221 121 222333445667799999999999988764 334445442
Q ss_pred -HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 372 -IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 372 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
+.......+....+.+.++..... ..........+..++...|++++|++.+++..+.. +.+...+..+...|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222222345555555555542111 12233445566678888999999999999998875 445677788888899999
Q ss_pred CHHHHHHHHHHHHHCCC-CCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 451 NEEKCLIVFERLKECGF-SPS--IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 451 ~~~~a~~~~~~~~~~g~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
++++|+..+++...... .++ ...|..+...+...|++++|..++++....
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999988876532 122 234557788888899999999999887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-07 Score=96.55 Aligned_cols=406 Identities=14% Similarity=0.117 Sum_probs=213.9
Q ss_pred CHHHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcC--------CCC
Q 004006 295 SRREFGLMVN--YYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG--------IEM 364 (779)
Q Consensus 295 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~~ 364 (779)
|..+-..+++ .|...|+++.|.+-.+.+. +..+|..|.+.|.+.++++-|.-++-.|.... ..-
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3344444443 4667788887777666654 44778888888888777777766665554311 011
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (779)
+..+=..+...-...|.+++|+.+|.+.... ..|=..|-..|.+++|.++-+.--+. . -..+|.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHH
Confidence 1122233334445677888888888877653 23344566678888877765432211 1 1345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH----------CC---------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004006 445 GYTIIGNEEKCLIVFERLKE----------CG---------FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN 505 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~----------~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 505 (779)
-+...++.+.|++.|++... .. -..|...|.-....+-..|+.+.|+.+|...+.
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 66677777777777765311 00 011333333344444445555555555544432
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 004006 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHG 585 (779)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (779)
|-.+++..+-.|+.++|-++-++- -|......|.+.|...|++.+|...|.+... +...|+.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRl 1002 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRL 1002 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 333444455556666665554432 2445555666666666777777666665432 2233332
Q ss_pred HHhcCCHH---------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCC-
Q 004006 586 FARAGEMK---------------RALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD--------EMTLAG- 641 (779)
Q Consensus 586 ~~~~~~~~---------------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~--------~m~~~~- 641 (779)
|..++.-| .|-+.|++. |. -+...+..|-+.|.+.+|+++-- +++..+
T Consensus 1003 cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1003 CKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 22222111 111122111 10 01112234555566555554311 112222
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCH---
Q 004006 642 -ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA-QKIPRNT--- 716 (779)
Q Consensus 642 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~--- 716 (779)
...|....+...+-++...++++|..++...++. ...+..| +..+..--.++-+.|.- .+-.++.
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R 1144 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQER 1144 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHH
Confidence 2345555666666666677777777777665542 2233333 33333444444444431 1112332
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcch
Q 004006 717 -FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQR 769 (779)
Q Consensus 717 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~ 769 (779)
..+..+...|.+.|.|..|-+=|-++-.+ ...+.++.++|+.++
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 35677888899999999888877665332 345667778888765
|
|
| >KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.5e-10 Score=110.31 Aligned_cols=88 Identities=34% Similarity=0.374 Sum_probs=75.0
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.....+|||+|||.+++..+|+++|++||.|+...|... ...+++.+||||+|.+.++++.|+.+ +-..++|+++.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr-~~~~~~~~fgFV~f~~~~~~~~~i~A---sp~~ig~~kl~ 360 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVR-SPGGKNPCFGFVEFENAAAVQNAIEA---SPLEIGGRKLN 360 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEe-ccCCCcCceEEEEEeecchhhhhhhc---CccccCCeeEE
Confidence 344456999999999999999999999999999888775 33455569999999999999999987 68899999999
Q ss_pred EEecCCcchhhH
Q 004006 228 VKLDDGRRLKNK 239 (779)
Q Consensus 228 v~~~~~~~~~~~ 239 (779)
|+..++...+..
T Consensus 361 Veek~~~~~g~~ 372 (419)
T KOG0116|consen 361 VEEKRPGFRGNG 372 (419)
T ss_pred EEeccccccccc
Confidence 999877665543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=79.91 Aligned_cols=50 Identities=36% Similarity=0.657 Sum_probs=31.9
Q ss_pred CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
||..+||.+|++|++.|++++|+++|++|.+.|+.||..||++|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45666666666666666666666666666666666666666666666653
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-11 Score=108.65 Aligned_cols=76 Identities=25% Similarity=0.508 Sum_probs=71.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+.++||||+.+.++..+|+..|.+||+|.+++|++| |+||-|+-.++|..|++.| ||..|+|++++|+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---------y~fvh~d~~eda~~air~l--~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---------YAFVHFDRAEDAVEAIRGL--DNTEFQGKRMHVQ 145 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc---------eeEEEEeeccchHHHHhcc--cccccccceeeee
Confidence 4459999999999999999999999999999999965 9999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
++.+|.+
T Consensus 146 ~stsrlr 152 (346)
T KOG0109|consen 146 LSTSRLR 152 (346)
T ss_pred eeccccc
Confidence 9988753
|
|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-10 Score=111.99 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=73.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.-..|||.||+..||++.|+++|++||.|+.|+.++| ||||-|.+.++|.+|++.+ ||+.|+|..|.|.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD---------YaFVHf~eR~davkAm~~~--ngkeldG~~iEvt 326 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD---------YAFVHFAEREDAVKAMKET--NGKELDGSPIEVT 326 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc---------eeEEeecchHHHHHHHHHh--cCceecCceEEEE
Confidence 3348999999999999999999999999999999877 9999999999999999999 9999999999999
Q ss_pred ecCCcchhhH
Q 004006 230 LDDGRRLKNK 239 (779)
Q Consensus 230 ~~~~~~~~~~ 239 (779)
+|++.-.++.
T Consensus 327 LAKP~~k~k~ 336 (506)
T KOG0117|consen 327 LAKPVDKKKK 336 (506)
T ss_pred ecCChhhhcc
Confidence 9998865543
|
|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-10 Score=101.25 Aligned_cols=79 Identities=28% Similarity=0.535 Sum_probs=72.7
Q ss_pred ccceEEeccCCCcCChHHHHH----HHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVME----FFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
+..+|||.||+..+.-++|++ +|++||.|.+|...+ |.+.||-|||.|.+.+.|..|+.+| +|..+-|++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k----t~KmRGQA~VvFk~~~~As~A~r~l--~gfpFygK~ 81 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK----TPKMRGQAFVVFKETEAASAALRAL--QGFPFYGKP 81 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC----CCCccCceEEEecChhHHHHHHHHh--cCCcccCch
Confidence 344999999999999999987 999999999998864 5888999999999999999999999 999999999
Q ss_pred EEEEecCCc
Q 004006 226 LTVKLDDGR 234 (779)
Q Consensus 226 ~~v~~~~~~ 234 (779)
++|++|+.+
T Consensus 82 mriqyA~s~ 90 (221)
T KOG4206|consen 82 MRIQYAKSD 90 (221)
T ss_pred hheecccCc
Confidence 999999766
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-06 Score=84.82 Aligned_cols=427 Identities=13% Similarity=0.082 Sum_probs=237.0
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh
Q 004006 322 MRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA 401 (779)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 401 (779)
-++.+ .-|..+|+.||.-+... -++++.++++++... ++-....|..-+.......+++..+.+|.+++.. ..+.
T Consensus 12 rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnl 86 (656)
T KOG1914|consen 12 RIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNL 86 (656)
T ss_pred HHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhH
Confidence 34443 34889999999988665 899999999999875 4556788999999999999999999999999876 3456
Q ss_pred hhHHHHHHHHHh-cCChH----HHHHHHHHHHH-cCCCC-ChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHHC
Q 004006 402 IIYGNIIYAQCQ-TRNME----RAEALVRDMEE-EGIDA-PIDIYHMMMDG---------YTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 402 ~~~~~l~~~~~~-~g~~~----~A~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~ 465 (779)
..|...+.---+ .++.. ...+.|+-... .|..+ +..+|+..+.. |..+.+++...+++.+++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 666665533222 22222 22233333332 22211 22334433322 22233444445555555432
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHH-
Q 004006 466 GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR--DGLKPDVV- 542 (779)
Q Consensus 466 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~- 542 (779)
-+ +++++..+=|....+. .|..+-..++ --+...+..|.++++++.. .|+.....
T Consensus 167 Pm-----------------~nlEkLW~DY~~fE~~---IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~ 224 (656)
T KOG1914|consen 167 PM-----------------HNLEKLWKDYEAFEQE---INIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPA 224 (656)
T ss_pred cc-----------------ccHHHHHHHHHHHHHH---HHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 11 1111111111111110 0111111111 0112234444444444432 12211111
Q ss_pred --------------HHHHHHHHHHhCC------CH--HHHHHHHHHH-HHcCCCCCcccH-----HHHHHHHHhcCC---
Q 004006 543 --------------LYNNIIRAFCGMG------NM--DRAIHIVKEM-QKERHRPTSRTF-----MPIIHGFARAGE--- 591 (779)
Q Consensus 543 --------------~~~~l~~~~~~~g------~~--~~A~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~--- 591 (779)
.|-.+|.---..+ .. .+..-++++. .-.+..|+.... ...-+.+.+.|+
T Consensus 225 vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~ 304 (656)
T KOG1914|consen 225 VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPD 304 (656)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccccc
Confidence 1222222111100 00 0111112211 111222221110 011112333333
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 592 ----MKRALEIFDMMRRSGCIPTVHTFNALILGLV---EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGK 664 (779)
Q Consensus 592 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 664 (779)
-+++..+++.....-..-+..+|..+..--- +-...+....++++++..-..--..+|..+++.-.+..-.+.
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHH
Confidence 4556666666554322223334443332111 111355666677776644322223567778888788888999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 665 AFEYFTKLRNEGLEL-DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 665 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
|..+|.++.+.+..+ ++.+.++++..|| .++.+-|.++|+.-.+.- ..+...-...++-+...++-..|..+|++.+
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 999999999887766 7888888887775 577899999999766542 3444555788999999999999999999999
Q ss_pred HcCCCCC--HHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 744 QEGVQPD--VHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 744 ~~g~~pd--~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
..++.+| ..+|..+|+-=.+-|+...+.++-+++
T Consensus 463 ~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 463 TSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred hccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8877766 568999999999999999988887765
|
|
| >KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-10 Score=98.30 Aligned_cols=82 Identities=20% Similarity=0.424 Sum_probs=75.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc-CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF-GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+-++|+.+|..+.+..+...|.+| |.+..+++-++ +.||.|+|||||+|++++-|.-|-+.| |++.|.|+.+.|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRn-krTGNSKgYAFVEFEs~eVA~IaAETM--NNYLl~e~lL~c 124 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRN-KRTGNSKGYAFVEFESEEVAKIAAETM--NNYLLMEHLLEC 124 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecc-cccCCcCceEEEEeccHHHHHHHHHHh--hhhhhhhheeee
Confidence 34589999999999999999999998 77888888898 999999999999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.+=-+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 986555
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-06 Score=80.32 Aligned_cols=316 Identities=10% Similarity=0.064 Sum_probs=196.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHh-HHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~ 373 (779)
+..-+.-|.+.+...|++..|+.-|..+++.+.. +-.++-.-...|...|+-.-|+.-+.+.++. .||.. ....-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 4556677899999999999999999999987321 3345566667888899999999999999885 56643 334455
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLN--AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
..+.+.|.++.|+.=|+.++......+ ...+..++ .. +++. .....+..+...|+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~-------~~-------~e~~---------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA-------LI-------QEHW---------VLVQQLKSASGSGD 170 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHH-------hH-------HHHH---------HHHHHHHHHhcCCc
Confidence 677899999999999999987644211 11111111 11 1111 12233444556677
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 452 EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (779)
Q Consensus 452 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (779)
...|++....+++.- ..|...|..-..+|...|....|+.=++...+.. ..++..+..+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777777642 2366666666777777777777776666655442 23455555566666777777777777777
Q ss_pred HHHCCCCCCHH----HHHHH---------HHHHHhCCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHHhcCCHHHH
Q 004006 532 VMRDGLKPDVV----LYNNI---------IRAFCGMGNMDRAIHIVKEMQKERHRPTSRT---FMPIIHGFARAGEMKRA 595 (779)
Q Consensus 532 ~~~~g~~~~~~----~~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a 595 (779)
.++.+ ||.- .|..| +....+.+++-++++..+...+..+...... +..+-.++...+++.+|
T Consensus 249 CLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 66642 2321 11111 1122344556666666666665544322222 33344455566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG 641 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 641 (779)
++.-.++++.... |+.++.--..+|.-...|++|+.-|+...+.+
T Consensus 327 iqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 327 IQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777664322 46666666667777777777777777776654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-08 Score=100.24 Aligned_cols=220 Identities=15% Similarity=0.120 Sum_probs=124.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
..-+.+.|++.+|.-+|+...+.++. +..+|..|+.+....++-..|+..++++.+.+ +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34456778888888888888887666 77888888888888888888888888888875 55677777888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHH-----------HHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcC
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLIN-----------LYTKIGKVSKALEVSKVMK-SSGIKHNMKTYSMLINGFLKLK 520 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~-----------~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~ 520 (779)
..|++.|++++...++ |..+.. .+.....+.+..++|-.+. ..+...|..++..|.-.|.-.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 8888888888664321 100000 0001111122222332222 2222344444455555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004006 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFD 600 (779)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 600 (779)
++++|...|+.++...+. |...||.|...++...+.++|+..|.+.++..+. -++....|.-+|...|.+++|.+.|-
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 555555555555543322 4445555555555555555555555555554433 22233333334555555555554443
Q ss_pred H
Q 004006 601 M 601 (779)
Q Consensus 601 ~ 601 (779)
.
T Consensus 523 ~ 523 (579)
T KOG1125|consen 523 E 523 (579)
T ss_pred H
Confidence 3
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-07 Score=92.91 Aligned_cols=403 Identities=15% Similarity=0.134 Sum_probs=221.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHC-------CCC-CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 304 NYYARRGDMHRARQTFENMRAR-------GIE-PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~-------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
++|+..|+..+|+.+.+.+.-. |-. .+..-...++..+ ..++++|..+|-+ +. + -...+.+
T Consensus 498 rcfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail--~kkfk~ae~ifle--qn----~---te~aigm 566 (1636)
T KOG3616|consen 498 RCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAIL--EKKFKEAEMIFLE--QN----A---TEEAIGM 566 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHH--HhhhhHHHHHHHh--cc----c---HHHHHHH
Confidence 4566667777766655543211 111 1122223333333 3467777777622 11 1 1245667
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
|....+|++|+.+-+.. +..--...-.+.+.++...|+-++|-++- .. +-. -...+..|.+.|...+|
T Consensus 567 y~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd-~laaiqlyika~~p~~a 634 (1636)
T KOG3616|consen 567 YQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGD-GLAAIQLYIKAGKPAKA 634 (1636)
T ss_pred HHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCc-cHHHHHHHHHcCCchHH
Confidence 77888888887654321 21111122233344455566666554431 11 111 12345566666666555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----------------------CCCCCHHHH-HHH
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS----------------------GIKHNMKTY-SML 512 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------~~~~~~~~~-~~l 512 (779)
...-..=.. +..|......+..++.+..-+++|-++|+++..- .++....+. ...
T Consensus 635 ~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~w 712 (1636)
T KOG3616|consen 635 ARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAW 712 (1636)
T ss_pred HHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHH
Confidence 543221111 0113333333333333333333333333322210 011011111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH
Q 004006 513 INGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM 592 (779)
Q Consensus 513 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (779)
...+...|+++.|+..|-+. ......+.+.....++.+|+.+++.+..... -...|-.+.+.|...|++
T Consensus 713 g~hl~~~~q~daainhfiea---------~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEA---------NCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHh---------hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 22333445555555544332 1223345566677888899999888887654 345677788889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKL 672 (779)
Q Consensus 593 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 672 (779)
+.|.++|.+.- .++-.|.+|.+.|+|++|.++-.+.. |.......|-.-..-+.+.|++.+|.++|-.+
T Consensus 782 e~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 782 EIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 99999887542 34556788999999999988876654 22334455666666677888888888877544
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004006 673 RNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (779)
Q Consensus 673 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (779)
. .|+ ..|.+|-+.|..++.+++.++-.- ..-..+...+..-|-..|+.+.|..-|-+..+
T Consensus 851 ~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------- 910 (1636)
T KOG3616|consen 851 G----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------- 910 (1636)
T ss_pred c----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------
Confidence 2 233 357788888888888887776532 12234556667777888888888877755532
Q ss_pred HHHHHHHHHHhcCCcchHHHhH
Q 004006 753 TYTSFINACKCSKSNQRNGRSW 774 (779)
Q Consensus 753 ~~~~l~~a~~~~g~~~~a~~~~ 774 (779)
|.+.++.|..++.|+.|.++-
T Consensus 911 -~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 911 -FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred -HHHHHHHhhhhhhHHHHHHHH
Confidence 567777777777777776654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-06 Score=90.67 Aligned_cols=333 Identities=10% Similarity=0.100 Sum_probs=161.6
Q ss_pred HHHHHHHHcCCC--CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004006 352 SCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (779)
Q Consensus 352 ~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (779)
.+++..+..+++ -|.+--+..+.++...+-..+-+++++++...... -+...-+.|+....+. +..+..+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 344444443332 24445555566666666666666666666543211 1222223333333222 233344444444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------CCCCCHhhHHHHHHHHHHcC
Q 004006 428 EEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----------------------GFSPSIISYGCLINLYTKIG 485 (779)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------------------g~~~~~~~~~~li~~~~~~g 485 (779)
-..+. + .+.......+-+++|+.+|++.--. .+ -....|..+..+-.+.|
T Consensus 1047 dnyDa-~------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1047 DNYDA-P------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred ccCCc-h------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcC
Confidence 33221 1 1223344444555555555543210 00 01233444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004006 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (779)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (779)
...+|++-|-+. .|...|..+++...+.|.|++..+.+....+..-+|... +.|+-+|++.++..+.++.+.
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc
Confidence 444444443221 133444444444444444444444444333333222221 234444444444444333221
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (779)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 645 (779)
.|+......+.+-|...+.++.|.-+|. ++..|..|...+...|++..|.+.-++. .+
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 2334444444444444444444444443 2334555556666666666666554433 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004006 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (779)
Q Consensus 646 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (779)
..||..+-.+|...+.+.-| +|-..++-....-+..|+..|...|-+++...+++...-.. .-....|+-|.-.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHH
Confidence 56777777777766655433 23333444556667888888888999998888888665432 3455567777766
Q ss_pred HHhc
Q 004006 726 WARR 729 (779)
Q Consensus 726 ~~~~ 729 (779)
|.+-
T Consensus 1323 Ysky 1326 (1666)
T KOG0985|consen 1323 YSKY 1326 (1666)
T ss_pred HHhc
Confidence 6655
|
|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-10 Score=101.46 Aligned_cols=85 Identities=26% Similarity=0.455 Sum_probs=74.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee---eceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~---~~~~~ 226 (779)
+.++||||-|...-.|+|++.+|..||.|.+|.+.+. ..|-+|||+||.|.+..+|++||..| +|..- -+..+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg--~dg~sKGCAFVKf~s~~eAqaAI~aL--HgSqTmpGASSSL 93 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG--PDGNSKGCAFVKFSSHAEAQAAINAL--HGSQTMPGASSSL 93 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC--CCCCCCCceEEEeccchHHHHHHHHh--cccccCCCCccce
Confidence 3459999999999999999999999999999999986 45899999999999999999999999 98875 35678
Q ss_pred EEEecCCcchhh
Q 004006 227 TVKLDDGRRLKN 238 (779)
Q Consensus 227 ~v~~~~~~~~~~ 238 (779)
.|.++...+.|.
T Consensus 94 VVK~ADTdkER~ 105 (371)
T KOG0146|consen 94 VVKFADTDKERT 105 (371)
T ss_pred EEEeccchHHHH
Confidence 899986665443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-06 Score=91.40 Aligned_cols=199 Identities=8% Similarity=0.005 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGI-EMS-LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
..|..+...+...|+.+++...+....+... ..+ ..........+...|++++|.++++++.+..+. +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3455555666666777776666666554321 112 222333444566778888888888887776433 4434332 22
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 004006 410 AQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG 485 (779)
Q Consensus 410 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 485 (779)
.+.. .+..+.+.+.+... ....+.....+..+...+...|++++|...+++..+.... +...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 2222 34444444444331 1111222333445556677777777777777777765422 4556666777777777
Q ss_pred CHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 486 KVSKALEVSKVMKSSGI-KHNM--KTYSMLINGFLKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 486 ~~~~A~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (779)
++++|...+++...... .++. ..|..+...+...|++++|+.+|+++..
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777665421 1121 2344566667777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-07 Score=94.33 Aligned_cols=200 Identities=8% Similarity=0.041 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG-DMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (779)
+.|...+.++++.+|.+ ...|+....++...| ++++++..++++.+.+.+ +..+|+....++.
T Consensus 54 erAL~lt~~aI~lnP~~---------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 54 PRALDLTADVIRLNPGN---------------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 88999999999999973 344555555666667 579999999999987644 6667887776666
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCh
Q 004006 343 VGRDM--EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT---RNM 417 (779)
Q Consensus 343 ~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 417 (779)
+.|+. ++++++++++++.+.. |..+|+....++.+.|+++++++.++++++.++. |..+|+....++.+. |.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 66653 6789999999887644 8899999999999999999999999999998766 778888777766554 222
Q ss_pred ----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 004006 418 ----ERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK 483 (779)
Q Consensus 418 ----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 483 (779)
++.++...+++... +.+..+|+.+...+.. .++..+|.+.+.+..+.++. +......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 45666666777664 5677778877777766 34455677777776664432 56667777777765
|
|
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=93.78 Aligned_cols=86 Identities=23% Similarity=0.403 Sum_probs=70.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee---ceEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVLTV 228 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~---~~~~~v 228 (779)
++|||.+||.++...+|..+|..|-..+.+.+-...+...-.+-+|||+|.+...|.+|+.+| ||..|+ +..+++
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaL--NGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNAL--NGVRFDPETGSTLHI 112 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHh--cCeeeccccCceeEe
Confidence 499999999999999999999999888877664321211112479999999999999999999 999995 899999
Q ss_pred EecCCcchhhH
Q 004006 229 KLDDGRRLKNK 239 (779)
Q Consensus 229 ~~~~~~~~~~~ 239 (779)
++|++...+.+
T Consensus 113 ElAKSNtK~kr 123 (284)
T KOG1457|consen 113 ELAKSNTKRKR 123 (284)
T ss_pred eehhcCccccc
Confidence 99987765443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-05 Score=85.77 Aligned_cols=261 Identities=11% Similarity=0.091 Sum_probs=167.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
..++......+.++...+-..+-+++++++.-.+-. -+....|.||-.-.+ -+.....+..+++-.-+ --
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-------a~ 1052 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-------AP 1052 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-------ch
Confidence 347777888899999999999999999998754211 122234445444433 35566666666664432 12
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
.+.......+-+++|..+|++.. .+..+...|+. ..+++++|.+.-++.. ...+|..+..+-.+.|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcC
Confidence 34555667778888888888753 24444444442 3466677766655543 2456888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 451 NEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (779)
Q Consensus 451 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (779)
...+|++.|-+. .|...|..+++...+.|.+++-.+++...++..-.|.. =..||-+|++.++..+..+++.
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc
Confidence 888887776543 26677888888888888888888888777766444433 3467778888887777665542
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIF 599 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 599 (779)
-|+......+..-|...|.++.|.-+|.. ...|..|...+...|++..|.+.-
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 24556666666667777777766666543 223455555555555555554433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-05 Score=80.22 Aligned_cols=226 Identities=12% Similarity=0.138 Sum_probs=158.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
....+++..|+...+.+.++. |+ ..|..++++ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 346678999999999998873 33 334455554 45789999999999988877655 8999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-C---------HH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG-N---------EE 453 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~ 453 (779)
+|..+|+++... .|+......+..+|.+.+++.+-.++--+|-+. .+.+...+-+++..+.+.- . ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999887 445777888888999998887655554444442 3334444444554443321 1 22
Q ss_pred HHHHHHHHHHHCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 454 KCLIVFERLKECG-FSPSIISYGCLINLYTKIGKVSKALEVSK-VMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (779)
Q Consensus 454 ~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (779)
-|.+.++.+.+.+ .--+..-.......+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555566666543 21122233344556677899999999994 333333334555556778889999999999999999
Q ss_pred HHHCCCC
Q 004006 532 VMRDGLK 538 (779)
Q Consensus 532 ~~~~g~~ 538 (779)
+...|.+
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 9888655
|
|
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-10 Score=110.73 Aligned_cols=86 Identities=26% Similarity=0.525 Sum_probs=78.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.+++|||+|+|+++++.|++.|++||.|.++.+++| +.+|+++||+||+|++.+...+++.. .-+.|+||.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d-~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRD-PSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEecc-CCCCCcccccceecCCCcchheeecc---cccccCCccccce
Confidence 5679999999999999999999999999999999999 99999999999999999999999865 4788999999999
Q ss_pred ecCCcchhhH
Q 004006 230 LDDGRRLKNK 239 (779)
Q Consensus 230 ~~~~~~~~~~ 239 (779)
.+.++..+.+
T Consensus 81 ~av~r~~~~~ 90 (311)
T KOG4205|consen 81 RAVSREDQTK 90 (311)
T ss_pred eccCcccccc
Confidence 9888865543
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-06 Score=88.95 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=12.4
Q ss_pred CChhhHHHHHHHHHhcCChHH
Q 004006 399 LNAIIYGNIIYAQCQTRNMER 419 (779)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~ 419 (779)
.|..+|..=|+.+|+..+...
T Consensus 836 rNa~afgF~is~L~kL~dTKs 856 (1102)
T KOG1924|consen 836 RNAQAFGFNISFLCKLRDTKS 856 (1102)
T ss_pred ccchhhccchHHHHhhccccc
Confidence 356666666666666655443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-07 Score=91.02 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=157.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
+..+-..+...++.++|+.+++.+++.+.. +..+|+....++...| ++++++++++++++.+.. +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 344445556677899999999999987433 4557887777777777 689999999999987544 6778888877777
Q ss_pred ccCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCH
Q 004006 378 KMGNA--EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNE 452 (779)
Q Consensus 378 ~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 452 (779)
+.|+. ++++.+++++.+.+.. |..+|.....++...|+++++++.++++++.+ ..+..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccc
Confidence 77763 7789999999988765 88999999999999999999999999999986 45677777776665554 222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 453 ----EKCLIVFERLKECGFSPSIISYGCLINLYTKI----GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (779)
Q Consensus 453 ----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (779)
++.++...+++..... |...|+-+..++... ++..+|.+.+.+....+ ..+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4566666666665432 677788777777663 34456777777766543 2356667777777764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-06 Score=88.27 Aligned_cols=265 Identities=14% Similarity=0.122 Sum_probs=124.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWA 523 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 523 (779)
.+......+.+|+.+++.+..... -...|..+.+-|...|+++.|.++|.+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 334445556666666666655422 2234555666666666666666666432 12344556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 524 NVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (779)
Q Consensus 524 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 603 (779)
.|.++-++.. |.......|..-..-+-+.|++.+|.++|-.+.. -...|.+|-+.|..+..+++..+-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~---------p~~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE---------PDKAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC---------chHHHHHHHhhCcchHHHHHHHHhC
Confidence 6666655443 2232334444444455556666666555432211 1233455666666666555554322
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------------
Q 004006 604 RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT------------- 670 (779)
Q Consensus 604 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~------------- 670 (779)
-. .-..+...+..-|-..|++..|...|-+.-+ |...++.|...+.+++|.++-+
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF 945 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence 11 0112333344445555555555554433221 2222233333333333322211
Q ss_pred -HHHHcCCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 671 -KLRNEGLELDVF------TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 671 -~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
..+..|-..-+. .+..-++.-+..+.++-|..+-+-..+.. ...+...+..-+-..|++++|-+-+-+.+
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 111111110000 11222333344555666666555444332 11223334455677888888888777776
Q ss_pred Hc
Q 004006 744 QE 745 (779)
Q Consensus 744 ~~ 745 (779)
+.
T Consensus 1023 kl 1024 (1636)
T KOG3616|consen 1023 KL 1024 (1636)
T ss_pred hc
Confidence 53
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-06 Score=101.84 Aligned_cols=373 Identities=9% Similarity=-0.003 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHV----YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
.+......|...|++.+|+..+..+. +... .......+...|++..+..+++.+.......+........
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a 416 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAG------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHH
Confidence 34455667777888877776444331 2221 1122233455678887777776652211111233334555
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATL--------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP----IDIYHM 441 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 441 (779)
..+...|++++|..+++.+...-... .......+...+...|++++|...+++..+.--..+ ....+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 66678899999999998876531110 112223344566789999999999998876311111 123456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHH
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKEC----GFS-PSIISYGCLINLYTKIGKVSKALEVSKVMKSS----GIK--H-NMKTY 509 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~ 509 (779)
+...+...|++++|...+.+.... |.. ....++..+...+...|++++|...+++.... +.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 667788899999999999887643 111 11234556677888999999999988776542 211 1 22344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-cccHH----
Q 004006 510 SMLINGFLKLKDWANVFAVFEDVMRDG--LKP--DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-SRTFM---- 580 (779)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~---- 580 (779)
..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.++|...+..+........ ...+.
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 556667777899999999988875531 111 233445566678889999999999888755311111 11111
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 004006 581 -PIIHGFARAGEMKRALEIFDMMRRSGCIPT---VHTFNALILGLVEKRQMEKAIEILDEMTLA----GISPN-EHTYTT 651 (779)
Q Consensus 581 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~-~~~~~~ 651 (779)
..+..+...|+.+.|...+........... ...+..+..++...|++++|..++++.... +...+ ..++..
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 112344567899999988776553211111 111345666788899999999999887643 22221 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~ 676 (779)
+..++...|+.++|...+.+.++..
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7778889999999999999998764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-06 Score=99.76 Aligned_cols=372 Identities=9% Similarity=-0.017 Sum_probs=218.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
....+...|++.+|......+.... .-..............|+++.+.++++.+.......+..........+...|+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 3444555666666655444332110 00111222233445567777777776655221111122233444556677889
Q ss_pred HHHHHHHHHHHHHCCC------CCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhc
Q 004006 452 EEKCLIVFERLKECGF------SPS--IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM----KTYSMLINGFLKL 519 (779)
Q Consensus 452 ~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~ 519 (779)
++++..++....+.-- .+. ......+...+...|++++|...++......-..+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 9998888887654310 011 112223345566789999999998887663111121 2345566667788
Q ss_pred CCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC--C-CcccHHHHHHHHH
Q 004006 520 KDWANVFAVFEDVMRDGLK-----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE----RHR--P-TSRTFMPIIHGFA 587 (779)
Q Consensus 520 ~~~~~a~~~~~~~~~~g~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~ 587 (779)
|++++|...+++....... ....++..+...+...|++++|...+++.... +.. + ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 9999999888887643111 11234455667788899999999888876543 211 0 1122334455667
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHH
Q 004006 588 RAGEMKRALEIFDMMRRSG--CIP--TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-NEHTY-----TTIMHGYA 657 (779)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~-----~~li~~~~ 657 (779)
..|++++|...+.+..... ..+ ....+..+...+...|++++|...+..+....... ....+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 7899999998888775431 111 23334445567778899999998888775421011 11111 11223445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc
Q 004006 658 SLGDTGKAFEYFTKLRNEGLELD---VFTYEALLKACCKSGRMQSALAVTKEMSAQ----KIPR-NTFVYNILIDGWARR 729 (779)
Q Consensus 658 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~ 729 (779)
..|+.+.|..++........... ...+..+..++...|+.++|..++++.... +... ...++..+..++.+.
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 57888888888776554221111 112456777788899999999998887642 2121 234567778888899
Q ss_pred CCHHHHHHHHHHHHHc
Q 004006 730 GDVWEAADLMQQMKQE 745 (779)
Q Consensus 730 g~~~~A~~~~~~m~~~ 745 (779)
|+.++|...+.++.+.
T Consensus 745 G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 745 GRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998875
|
|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.4e-10 Score=102.83 Aligned_cols=81 Identities=19% Similarity=0.353 Sum_probs=75.6
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
...-.++||..+.++.+++||+.+|+.||.|..|.+.++ ..++.+|||||++|.+..+...|+..| |-..|+|..++
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAiasM--NlFDLGGQyLR 283 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYLR 283 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeecc-CCCCCccceeeEEeccccchHHHhhhc--chhhcccceEe
Confidence 344469999999999999999999999999999999999 888999999999999999999999999 99999999999
Q ss_pred EEec
Q 004006 228 VKLD 231 (779)
Q Consensus 228 v~~~ 231 (779)
|..+
T Consensus 284 VGk~ 287 (544)
T KOG0124|consen 284 VGKC 287 (544)
T ss_pred cccc
Confidence 9754
|
|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-09 Score=109.30 Aligned_cols=80 Identities=21% Similarity=0.444 Sum_probs=73.5
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
.+||.||++.++.++|.++|+.||.|.+|++..| ..| ++|| ||+|+++++|++|+..+ ||..+.|+.|.|....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~--ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKL--NGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHh--cCcccCCCeeEEeecc
Confidence 4999999999999999999999999999999998 334 9999 99999999999999999 9999999999999887
Q ss_pred Ccchhh
Q 004006 233 GRRLKN 238 (779)
Q Consensus 233 ~~~~~~ 238 (779)
.+..+.
T Consensus 152 ~~~er~ 157 (369)
T KOG0123|consen 152 RKEERE 157 (369)
T ss_pred chhhhc
Confidence 765443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=96.29 Aligned_cols=225 Identities=13% Similarity=0.075 Sum_probs=147.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
.+.-+.+.|++.+|.-+|+..++.+ +-+...|..|......+++-..|+..+.+.++.... +....-.|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 3445678888999999998888875 667888888888888899888899988888886432 56677778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCC
Q 004006 487 VSKALEVSKVMKSSGIKHNMKTYSMLI---------NGFLKLKDWANVFAVFEDVMR-DGLKPDVVLYNNIIRAFCGMGN 556 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~ll---------~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~ 556 (779)
-..|++.++..+....+ ..|.... ..+.......++.++|-++.. .+...|..++..|.-.|.-.|+
T Consensus 369 q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 88898888888664321 0000000 011112223444455544433 3334566666666666667777
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 557 MDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 557 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
+++|+..|+.++...+. |..+|+.|...++...+.++|+..|.++++..+. -+.+...|..+|...|.|++|.+.|-.
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 77777777777666655 6666777777777777777777777777665332 244555566666677777777666655
Q ss_pred HH
Q 004006 637 MT 638 (779)
Q Consensus 637 m~ 638 (779)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 43
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-07 Score=100.49 Aligned_cols=226 Identities=11% Similarity=0.066 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR-GIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
+...|-.-|....+.++.++|++++++++.. +++- -...|.++++.....|.-+...++|++..+. .-...+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3445666677777777777777777777654 1111 1225666666666666666777777777663 22345667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHh
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTI 448 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 448 (779)
.|...|.+.+++++|.++|+.|.++-. .....|...+..+.++++-+.|..++.+..+. ++. ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 777777777777777777777776533 35566777777777777777777777666653 111 23344455555566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 004006 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANV 525 (779)
Q Consensus 449 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a 525 (779)
.|+.+++..+|+.++....+ -...|+..|++-.++|+.+.+.++|+++...++.+- -..|..++..-.+.|+-+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 67777777777766654222 455677777777777777777777777766655432 23444444444444444333
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-09 Score=99.84 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=73.0
Q ss_pred ceEEeccCCCcCChHHHHHHHh-ccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+.+||.|+|+++...+|+.+|. +-|+|..|.+..| .+||+||||.|||.+++.+++|++.| |.+.++||+|+|..
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~l--nk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKL--NKYEVNGRELVVKE 120 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHh--hhccccCceEEEec
Confidence 3699999999999999999996 6899999999998 67999999999999999999999999 99999999999987
Q ss_pred cCC
Q 004006 231 DDG 233 (779)
Q Consensus 231 ~~~ 233 (779)
..+
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 654
|
|
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.2e-09 Score=113.45 Aligned_cols=70 Identities=21% Similarity=0.452 Sum_probs=59.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhcc------------CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQF------------GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~------------g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~ 219 (779)
++|||||||+.+|+++|+++|.+| +.|..+.+. +.+|||||+|.+.++|..|+ +| ||.
T Consensus 176 r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-------~~kg~afVeF~~~e~A~~Al-~l--~g~ 245 (509)
T TIGR01642 176 RRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-------KEKNFAFLEFRTVEEATFAM-AL--DSI 245 (509)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-------CCCCEEEEEeCCHHHHhhhh-cC--CCe
Confidence 599999999999999999999975 234444444 34899999999999999999 47 999
Q ss_pred eeeceEEEEEec
Q 004006 220 EFHGRVLTVKLD 231 (779)
Q Consensus 220 ~~~~~~~~v~~~ 231 (779)
.|.|+.|+|...
T Consensus 246 ~~~g~~l~v~r~ 257 (509)
T TIGR01642 246 IYSNVFLKIRRP 257 (509)
T ss_pred EeeCceeEecCc
Confidence 999999999753
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.4e-09 Score=98.47 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=68.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+||||+|...+++.+|++.|.+||+|+.+.+... +|||||+|.+..+|+.|..+. .|-..|+|++|+|.|.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-------~~CAFv~ftTR~aAE~Aae~~-~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-------KGCAFVTFTTREAAEKAAEKS-FNKLVINGFRLKIKWG 300 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-------cccceeeehhhHHHHHHHHhh-cceeeecceEEEEEeC
Confidence 49999999999999999999999999999999987 789999999999999999875 4667789999999999
Q ss_pred CC
Q 004006 232 DG 233 (779)
Q Consensus 232 ~~ 233 (779)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=93.24 Aligned_cols=252 Identities=13% Similarity=0.175 Sum_probs=155.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 004006 478 INLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNM 557 (779)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 557 (779)
++-+.-.|++..++.-.+ .....-.........+.++|...|+++.++. ++... ..|.......+...+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccch
Confidence 344556788888886665 2222212234455567788888888776543 33222 245555554444444333445
Q ss_pred HHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 558 DRAIHIVKEMQKERHRP-TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 558 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
+.++.-+++........ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444433332221 2222222334566678899888887643 2566666778888899999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004006 637 MTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712 (779)
Q Consensus 637 m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (779)
|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ...+..+++.+..++...|++++|.+++++....+
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 88643 33444445554432 23588999999997665 45688888888888889999999999998887665
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 004006 713 PRNTFVYNILIDGWARRGDV-WEAADLMQQMKQE 745 (779)
Q Consensus 713 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 745 (779)
+.+..++..++-+....|+. +.+.+++.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55677777788777788876 6677888888763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=92.57 Aligned_cols=248 Identities=13% Similarity=0.108 Sum_probs=118.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 004006 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (779)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (779)
.=.|+|..++.-.+ ........+......+.+++...|+++.++. ++.+.. .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 33566666665554 2222112223344555566666666554332 222221 334444433333332223334444
Q ss_pred HHHHHHHHcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 387 HWFEEAKERHAT-LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 387 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
.-++........ .+.........++...|++++|++++.+. .+.......+.+|.+.++.+.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 433332222111 12222233334455566666666665432 23444455556666666666666666666654
Q ss_pred CCCCCHhhHHHHHHH----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004006 466 GFSPSIISYGCLINL----YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV 541 (779)
Q Consensus 466 g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 541 (779)
+ .|. +...++.+ +.-.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+.. |.
T Consensus 161 ~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~ 235 (290)
T PF04733_consen 161 D--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DP 235 (290)
T ss_dssp S--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HH
T ss_pred C--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CH
Confidence 2 222 22222222 22233566777777775543 3456666666666666677777777776666554333 45
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHc
Q 004006 542 VLYNNIIRAFCGMGNM-DRAIHIVKEMQKE 570 (779)
Q Consensus 542 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 570 (779)
.+...++.+....|+. +.+.+++.++...
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5666666666666665 5555666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=99.99 Aligned_cols=86 Identities=15% Similarity=0.317 Sum_probs=77.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
-+++|||.+|+..+...+|+.+|++||.|...+||.+ ..+-..++||||+..+.+.|.++|..| +...|+||.|.|+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTN-aRsPGaRCYGfVTMSts~eAtkCI~hL--HrTELHGrmISVE 480 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN-ARSPGARCYGFVTMSTSAEATKCIEHL--HRTELHGRMISVE 480 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeec-CCCCCcceeEEEEecchHHHHHHHHHh--hhhhhcceeeeee
Confidence 3458999999999999999999999999999999998 666677999999999999999999999 9999999999999
Q ss_pred ecCCcchhh
Q 004006 230 LDDGRRLKN 238 (779)
Q Consensus 230 ~~~~~~~~~ 238 (779)
.++.-..+.
T Consensus 481 kaKNEp~Gk 489 (940)
T KOG4661|consen 481 KAKNEPGGK 489 (940)
T ss_pred ecccCcccc
Confidence 887654443
|
|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.3e-09 Score=106.46 Aligned_cols=79 Identities=20% Similarity=0.450 Sum_probs=73.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++||||+|+..+++.||.++|+.||.|.+|.++-. +|||||......+|.+|+.+| +.+.+.++.|+|.|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-------R~cAfI~M~~RqdA~kalqkl--~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-------RGCAFIKMVRRQDAEKALQKL--SNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-------CceeEEEEeehhHHHHHHHHH--hcccccceeeEEee
Confidence 348999999999999999999999999999999876 999999999999999999999 99999999999999
Q ss_pred cCCcchhh
Q 004006 231 DDGRRLKN 238 (779)
Q Consensus 231 ~~~~~~~~ 238 (779)
+.++..+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 97775443
|
|
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=103.40 Aligned_cols=81 Identities=27% Similarity=0.454 Sum_probs=70.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCC--CCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN--FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..++|||.||++++|.++++..|.+.|.|.++.|..-++. --.|.|||||+|.+.++|++|++.| +|..|+|+.|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~l--qgtvldGH~l~ 591 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKAL--QGTVLDGHKLE 591 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHh--cCceecCceEE
Confidence 3345999999999999999999999999999988764111 1124599999999999999999999 99999999999
Q ss_pred EEecC
Q 004006 228 VKLDD 232 (779)
Q Consensus 228 v~~~~ 232 (779)
|.++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99987
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.7e-06 Score=92.84 Aligned_cols=204 Identities=15% Similarity=0.103 Sum_probs=96.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM-----SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIY 404 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 404 (779)
+...|-..+......+++++|.+++++.+.. +.+ -.-.|..+++.....|.-+...++|+++.+. .-....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3344555555555555555555555555442 111 1224444454444445555555555555442 1122344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHH
Q 004006 405 GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTK 483 (779)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~ 483 (779)
..|..+|.+.+.+++|.++|+.|.+. ..-...+|...+..+.+..+-+.|..++.+.++.-.+- .+......+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 45555555555555555555555543 12234445555555555555555555555554431110 12233334444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 484 IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (779)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (779)
.|+.+.+..+|+...... +--...|+..|++-.++|+.+.+..+|++++..++.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 555555555555544432 123444555555555555555555555555554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-07 Score=93.41 Aligned_cols=190 Identities=10% Similarity=0.097 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.|.-+|-+|...|+..+|..+..+..++ +||...|..+..+....--+++|+++++....+ ....+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 3556788888888888888887777774 677888888888877777778888887765432 2233333444
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (779)
+.++|+++.+.|+.-.+...- -..+|+.+..++.+.++++.|.+.|....... +.+...||.+-.+|.+.++-.+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHH
Confidence 578888888888887776433 56788888888888888888888888887764 4456778888888888888888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 458 VFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 458 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
.+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus 575 ~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 575 KLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88888887643 666777777788888888888888877765
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-08 Score=98.01 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=70.4
Q ss_pred hccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 147 ~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
..++.|+|||.|||++.|...|++-|..||.|..+.|+.. |+++| .|.|.++++|++|++.| ||..|+||.|
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~----GkskG--VVrF~s~edAEra~a~M--ngs~l~Gr~I 603 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN----GKSKG--VVRFFSPEDAERACALM--NGSRLDGRNI 603 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc----CCccc--eEEecCHHHHHHHHHHh--ccCcccCcee
Confidence 3467789999999999999999999999999999999544 88888 89999999999999999 9999999999
Q ss_pred EEEec
Q 004006 227 TVKLD 231 (779)
Q Consensus 227 ~v~~~ 231 (779)
+|.++
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99863
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-06 Score=85.54 Aligned_cols=234 Identities=12% Similarity=0.135 Sum_probs=168.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004006 438 IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFL 517 (779)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 517 (779)
.-..+...+...|-...|+.+|+++. .|.-.|.+|...|+..+|..+..+..++ +++...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34456678888888888888888764 3556778888888888888888777763 578888888888887
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004006 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALE 597 (779)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 597 (779)
...-+++|+++++..... .-..+.....+.++++++.+.|+.-.....- ...+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765332 2222333334478888888888877666443 55677777777788888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004006 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL 677 (779)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 677 (779)
.|.......+. +...||++-.+|.+.++-.+|...+.+..+.+ .-+...|..-+....+.|.+++|++.+.++.+...
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 88888775443 56788888888888888888888888888776 55556666666677788888888888888775421
Q ss_pred -CCCHHHHHHHHHHHH
Q 004006 678 -ELDVFTYEALLKACC 692 (779)
Q Consensus 678 -~~~~~~~~~l~~~~~ 692 (779)
.-|..+...++....
T Consensus 619 ~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRTVL 634 (777)
T ss_pred hcccchhhHHHHHHHH
Confidence 124444444444433
|
|
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-08 Score=105.40 Aligned_cols=82 Identities=32% Similarity=0.444 Sum_probs=76.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|.|.|+|+..+-.+++++|..||.+++|+|..- ...+.++|||||+|-++..|.+|+.+| .+..|-||.+.++|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al--~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDAL--GSTHLYGRRLVLEW 689 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhh--cccceechhhheeh
Confidence 469999999999999999999999999999999975 567788999999999999999999999 88899999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
|++..
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 97764
|
|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-09 Score=93.93 Aligned_cols=72 Identities=31% Similarity=0.651 Sum_probs=66.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.++|||+|++.+.+.+|+.+|..||.+.++.+. .||+||+|++..+|..|+..+ ||..|.|..+.|+++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---------~gf~fv~fed~rda~Dav~~l--~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---------NGFGFVEFEDPRDADDAVHDL--DGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---------cccceeccCchhhhhcccchh--cCceecceeeeeecc
Confidence 379999999999999999999999999999775 579999999999999999999 999999999999998
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
+..
T Consensus 71 r~~ 73 (216)
T KOG0106|consen 71 RGK 73 (216)
T ss_pred ccc
Confidence 754
|
|
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-08 Score=97.68 Aligned_cols=83 Identities=27% Similarity=0.489 Sum_probs=76.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..++|||+|+.+++++++++.|.+||.|..+.++.| +.+.+++|||||+|++++++.+++.. ..+.|+|+.+.|..
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~---~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ---KFHDFNGKKVEVKR 172 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeec-ccccccccceeeEeccccccceeccc---ceeeecCceeeEee
Confidence 459999999999999999999999999999999999 99999999999999999999999865 78999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
|.++-..
T Consensus 173 A~pk~~~ 179 (311)
T KOG4205|consen 173 AIPKEVM 179 (311)
T ss_pred ccchhhc
Confidence 9877543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-06 Score=83.13 Aligned_cols=186 Identities=17% Similarity=0.099 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---hHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTY 369 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~ 369 (779)
....+..++..|.+.|++++|+..|+++....... ...++..+..++...|++++|...++++++.... +. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 56677788899999999999999999998863221 1246778888999999999999999999886422 22 256
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 370 SIIVGGFAKM--------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (779)
Q Consensus 370 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 441 (779)
..+..++.+. |++++|++.|+++....+. +...+..+..... .. .... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHHHH
Confidence 6666677655 7889999999999887443 3333322221110 00 0000 11234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKECGF-SP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
+...|...|++++|+..|.++.+... .| ....+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66778899999999999999887532 12 3467888999999999999999998887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.3e-06 Score=90.15 Aligned_cols=220 Identities=10% Similarity=0.124 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcC------------
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG------------ 361 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------ 361 (779)
.+...|..|+..|...|++++|+++++...+.... ....|..+...+...+++.++.-+ .+...-
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 46677889999999999999999999988776322 333444444466666666655544 222210
Q ss_pred ------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 004006 362 ------IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP 435 (779)
Q Consensus 362 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 435 (779)
..-+...+.+++.+|-+.|+.++|..+++++++.++. |..+.+.++..|+.. ++++|++++.+....
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 0112356667777777777777777777777777644 777777777777777 777777777666553
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 004006 436 IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS-GIKHNMKTYSMLIN 514 (779)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~ 514 (779)
|....++..+.+++.++...... | .+.-.++.+.+... +...-..++..+-.
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~~-d----------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNSD-D----------------FDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCcc-c----------------chHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 44445566666666666554211 1 11112222222221 11222334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 515 GFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAF 551 (779)
Q Consensus 515 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 551 (779)
.|-+.++|+++..+|+.+++.... |......++.+|
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y 267 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFY 267 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence 556666666666666666665433 444444444444
|
|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-08 Score=99.38 Aligned_cols=74 Identities=15% Similarity=0.424 Sum_probs=69.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||| +++|+.+|.+.|+++|.|.++++++| . | +-|||||.|.++++|.+|+..+ |...++|++|+|-|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d-~-t--slgy~yvnf~~~~da~~A~~~~--n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD-A-T--SLGYAYVNFQQPADAERALDTM--NFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeec-C-C--ccceEEEecCCHHHHHHHHHHc--CCcccCCcEEEeehh
Confidence 379999 99999999999999999999999999 5 5 9999999999999999999999 999999999999997
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
...
T Consensus 73 ~rd 75 (369)
T KOG0123|consen 73 QRD 75 (369)
T ss_pred ccC
Confidence 443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.9e-06 Score=91.14 Aligned_cols=246 Identities=13% Similarity=0.087 Sum_probs=157.8
Q ss_pred HHHCCCCC-CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 004006 322 MRARGIEP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN 400 (779)
Q Consensus 322 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (779)
....++.| +...|..|+..|...+++++|.++.+..++.. +-....|..++..+...++..++..+ .
T Consensus 21 ~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------- 88 (906)
T PRK14720 21 ADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N--------- 88 (906)
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------
Confidence 33334444 44678889999988999999999998777753 22455566666677777776665544 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 004006 401 AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480 (779)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 480 (779)
++.......++.-...+...|.+. ..+..++..++.+|-+.|+.++|..+++++++.... |..+.|.+...
T Consensus 89 ------~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~ 159 (906)
T PRK14720 89 ------LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATS 159 (906)
T ss_pred ------hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHH
Confidence 223333334443334444444443 234457888899999999999999999999987633 78889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004006 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRA 560 (779)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 560 (779)
|... ++++|..++.+.... |...+++.++.+++.++....+. |...+..+.
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~------------ 210 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE------------ 210 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH------------
Confidence 9988 999999988877653 55666777888888877775332 222222222
Q ss_pred HHHHHHHHHc-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004006 561 IHIVKEMQKE-RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (779)
Q Consensus 561 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 622 (779)
+.+... +..--..++..+-..|-..++|++++.+++.+++.... |......++.+|.
T Consensus 211 ----~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 ----RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222221 11112334444555666777777777777777776544 4555555555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.2e-06 Score=77.05 Aligned_cols=160 Identities=12% Similarity=0.061 Sum_probs=128.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004006 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL 659 (779)
Q Consensus 580 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 659 (779)
..+-..+...|+-+....+......... .|......++...++.|++.+|+..|++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4455566677777777777777654433 366677778888899999999999999988765 77888999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (779)
Q Consensus 660 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (779)
|+++.|..-|.+.++.. .-+...++.|...|.-.|+++.|..++....... .-|..+-..|..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999998875 3466778888888999999999999998887664 447777788888888999999999887
Q ss_pred HHHH
Q 004006 740 QQMK 743 (779)
Q Consensus 740 ~~m~ 743 (779)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=77.18 Aligned_cols=123 Identities=12% Similarity=-0.010 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 004006 266 HRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR 345 (779)
Q Consensus 266 a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (779)
-...|+++++.+|.+ +..+...+.+.|++++|+..|+.+..... .+...|..+..++...|
T Consensus 12 ~~~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 12 PEDILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHh
Confidence 346678888887752 33457778899999999999999988753 37788889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
++++|...|++..+.+. .+...+..+..++.+.|++++|+..|++..+..+. +...|.....
T Consensus 73 ~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~ 134 (144)
T PRK15359 73 EYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQN 134 (144)
T ss_pred hHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 99999999999998753 37888999999999999999999999999887543 4555544433
|
|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=88.95 Aligned_cols=79 Identities=25% Similarity=0.283 Sum_probs=72.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeE--------EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
.+.+|||.|||.++|.+++.++|++||.|.. |++.++ . .|+.+|-|.+.|-..+++.-|+..| ++..|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~-~G~lKGDaLc~y~K~ESVeLA~~il--De~~~ 208 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-N-QGKLKGDALCCYIKRESVELAIKIL--DEDEL 208 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-C-CCCccCceEEEeecccHHHHHHHHh--Ccccc
Confidence 3458999999999999999999999999863 888887 3 4999999999999999999999999 99999
Q ss_pred eceEEEEEecC
Q 004006 222 HGRVLTVKLDD 232 (779)
Q Consensus 222 ~~~~~~v~~~~ 232 (779)
.|+.|+|+.|+
T Consensus 209 rg~~~rVerAk 219 (382)
T KOG1548|consen 209 RGKKLRVERAK 219 (382)
T ss_pred cCcEEEEehhh
Confidence 99999999874
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-05 Score=74.36 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
..+-..+...|+-+.+..+........ ..|....+..++...+.|++.+|...|++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444555555666555555555543321 2244455556666666666666666666666543 33566666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
|++++|..-|.+..+.... +...++++...|.-.|+++.|..++......+ ..+..+-..+.......|+++.|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666666655333 45555566666666666666666665555543 224444445555555555555555544
Q ss_pred H
Q 004006 460 E 460 (779)
Q Consensus 460 ~ 460 (779)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.7e-06 Score=79.15 Aligned_cols=187 Identities=10% Similarity=-0.061 Sum_probs=133.9
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh--hhHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-M-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA--IIYG 405 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 405 (779)
....+..+...+...|++++|...|++++..... + ...++..++.+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 5567778888889999999999999999875321 1 1257788899999999999999999999987543222 2566
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 004006 406 NIIYAQCQT--------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCL 477 (779)
Q Consensus 406 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 477 (779)
.+..++.+. |+.++|.+.|+++.+.. +.+...+..+..... ... .+. .....+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 677777665 77889999999988763 222222222211110 000 000 112256
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 478 INLYTKIGKVSKALEVSKVMKSSGI--KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
...|.+.|++++|+..++......- ......+..+..++.+.|++++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6789999999999999999987631 223578889999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-06 Score=76.04 Aligned_cols=149 Identities=9% Similarity=0.148 Sum_probs=112.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
+-.|...|+++.+....+.+... . ..+...++.+++...++..++.+. .|...|..|...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 45788888888765554332211 0 012235677888888888877653 4788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQ-CQTRN--MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
++|+..|+++.+..+. +...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888655 778888888764 56676 488999999988875 556778888888888888888888888
Q ss_pred HHHHHCC
Q 004006 460 ERLKECG 466 (779)
Q Consensus 460 ~~~~~~g 466 (779)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 8888763
|
|
| >KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.2e-08 Score=90.19 Aligned_cols=81 Identities=23% Similarity=0.353 Sum_probs=75.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+...+||||+.+.+|.++++..|+.||.|..+.|..| +.+|.++||+||+|.+.+.+..++. | ||..|.|+.+.|.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d-~~~~~~k~~~yvef~~~~~~~~ay~-l--~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKD-KFRGHPKGFAYVEFSSYELVEEAYK-L--DGSEIPGPAIEVT 175 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeecc-ccCCCcceeEEEecccHhhhHHHhh-c--CCcccccccceee
Confidence 3459999999999999999999999999999999999 8899999999999999999999998 7 9999999999998
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+.+-+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 86543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-05 Score=74.40 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHH
Q 004006 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG-YASLGD--TGKAFEY 668 (779)
Q Consensus 592 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~a~~~ 668 (779)
.+++...++...+.... +...|..|...|...|++++|+..|++..... ..+...+..+..+ +...|+ .++|.++
T Consensus 55 ~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 55 PEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 33444444444433322 34444444444444444444444444444332 2233333333333 233333 2444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004006 669 FTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (779)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (779)
+++.++.+ +.+...+..+...+.+.|++++|...|+++.+
T Consensus 133 l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444443 22334444444444444444444444444443
|
|
| >KOG0533 consensus RRM motif-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=85.58 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=74.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|+|.||++.|+++||+++|..||.++.+-+--| .+|++.|.|-|.|...++|.+|++.+ ||..++|+++++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~--~~G~s~Gta~v~~~r~~DA~~avk~~--~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD--RAGRSLGTADVSFNRRDDAERAVKKY--NGVALDGRPMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccC--CCCCCCccceeeecchHhHHHHHHHh--cCcccCCceeeeEEe
Confidence 48999999999999999999999998888877665 67999999999999999999999999 999999999999987
Q ss_pred CCcchhh
Q 004006 232 DGRRLKN 238 (779)
Q Consensus 232 ~~~~~~~ 238 (779)
.+.....
T Consensus 160 ~~~~~~~ 166 (243)
T KOG0533|consen 160 SSPSQSK 166 (243)
T ss_pred cCccccc
Confidence 6665444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-05 Score=69.09 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=76.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 004006 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK---- 518 (779)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 518 (779)
...|++.|++++|++...... +......=..++.+..+.+-|.+.+++|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345566666666666555421 22223233344555566666666666666532 44455545444443
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH-HHHHH
Q 004006 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM-KRALE 597 (779)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~ 597 (779)
.+.+.+|.-+|++|-++ ..|+..+.+.+..++...|++++|..+++........ +..+...++.+-...|.- +...+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHH
Confidence 24456666666666543 3445555555666666666666666666666655444 444444444333333332 22333
Q ss_pred HHHHHHH
Q 004006 598 IFDMMRR 604 (779)
Q Consensus 598 ~~~~~~~ 604 (779)
.+.+.+.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.2e-05 Score=68.93 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=88.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 004006 584 HGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL---- 659 (779)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 659 (779)
..|++.+++++|++....... .+....+ +..+.+..+++-|...+++|.+. .+..|.+.|..++.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 346666777777666655211 1222222 33455666677777777777653 3556666666665432
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHH
Q 004006 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVW-EAADL 738 (779)
Q Consensus 660 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~ 738 (779)
+.+..|.-+|++|-+. ..|+..+.+...-++...|++++|..+++...... ..+..++..+|-.-...|.-. --.+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3466777777777654 35677777777777777777777777777776654 445666655555555555433 33445
Q ss_pred HHHHHH
Q 004006 739 MQQMKQ 744 (779)
Q Consensus 739 ~~~m~~ 744 (779)
+.++..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=70.19 Aligned_cols=91 Identities=12% Similarity=-0.114 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (779)
+..++...|++++|...|+.++... +.+...|..+..++...|++++|...++++...+ +.+...+..++.++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444444455555555555544443 2344444445555555555555555555554443 3444444555555555555
Q ss_pred HHHHHHHHHHHHH
Q 004006 732 VWEAADLMQQMKQ 744 (779)
Q Consensus 732 ~~~A~~~~~~m~~ 744 (779)
+++|+..|++.++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
|
|
| >KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-07 Score=94.45 Aligned_cols=70 Identities=23% Similarity=0.435 Sum_probs=63.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
+.++|+|-|||..|++++|+++|+.||+|++|+.- -..+|..||+|-+..+|++|+++| |+..+.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t------~~~~~~~~v~FyDvR~A~~Alk~l--~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET------PNKRGIVFVEFYDVRDAERALKAL--NRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc------cccCceEEEEEeehHhHHHHHHHH--HHHHhhhhhhc
Confidence 44699999999999999999999999999996443 344899999999999999999999 99999999999
|
|
| >KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.6e-07 Score=93.13 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=73.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCC--CCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN--FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
..+.++|||||++.++++.|...|.+||+|..++|+--+.. ..+.+.||||.|-+..++++|++.| +|..+.+..+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~l--qg~iv~~~e~ 249 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKEL--QGIIVMEYEM 249 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHh--cceeeeeeee
Confidence 34569999999999999999999999999999999875222 2455789999999999999999999 9999999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
++.|++..
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99998543
|
|
| >KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.7e-08 Score=83.91 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=70.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||+|+...++++.|.++|-+.|+|..|.|..+ + .++.| ||||+|.++-++.-|++.+ ||..+.++.+.|.+.
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~-d~~~k-Fa~v~f~~E~sv~~a~~L~--ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-Q-DQEQK-FAYVFFPNENSVQLAGQLE--NGDDLEEDEEQRTLR 84 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-c-cCCCc-eeeeecccccchhhhhhhc--ccchhccchhhcccc
Confidence 39999999999999999999999999999988876 3 36666 9999999999999999999 999999999999875
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
.+.
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=57.59 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 746 GVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 746 g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555555
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-05 Score=83.06 Aligned_cols=136 Identities=13% Similarity=-0.002 Sum_probs=106.0
Q ss_pred CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (779)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (779)
...+...+-.|..+....|.+++|+.+++...+... -+...+..++..+.+.+++++|+..+++.....+. +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 344577778888888888888888888888887532 24667777888888888888888888888877655 7777778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
+..++.+.|++++|.++|+++...+ +.+..++..+...+...|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888743 445777888888888888888888888887764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0024 Score=63.48 Aligned_cols=83 Identities=10% Similarity=0.208 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..||..|..+|.+++.++++++|..- ..--..+|..-+++-...+++.....+|.+.+..- .+...|..-+.
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~ 117 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLE 117 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHH
Confidence 6677999999999999999999999999754 23345688888888778899999999999988763 45777777776
Q ss_pred HHHccC
Q 004006 375 GFAKMG 380 (779)
Q Consensus 375 ~~~~~g 380 (779)
-..+.+
T Consensus 118 YIRr~n 123 (660)
T COG5107 118 YIRRVN 123 (660)
T ss_pred HHHhhC
Confidence 555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-07 Score=57.05 Aligned_cols=32 Identities=34% Similarity=0.663 Sum_probs=18.5
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 004006 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (779)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (779)
|+.||..||++|+++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4e-05 Score=76.92 Aligned_cols=118 Identities=11% Similarity=0.097 Sum_probs=70.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004006 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (779)
..|++++|+..++.++.. .+-|...+......+.+.++..+|.+.|+++....+. ....+..+..+|.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 456666666666666554 2334555555566666666666666666666665333 25555566666666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 423 LVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
++++..... +.|...|..|..+|...|+..++....-+..
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666665553 4556666666666666666666655554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0031 Score=62.96 Aligned_cols=443 Identities=11% Similarity=0.120 Sum_probs=216.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--HH
Q 004006 306 YARRGDMHRARQTFENMRARGIEPT------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--FA 377 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--~~ 377 (779)
+-+++++.+|.++|.+....- ..+ ....+.+|++|.. ++++.....+..+.+.- + ...|..+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 347789999999999987752 222 2345678888864 56777666666665532 2 2334444433 45
Q ss_pred ccCCHHHHHHHHHHHHHc--CCCC------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCChhhH
Q 004006 378 KMGNAEAADHWFEEAKER--HATL------------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI----DAPIDIY 439 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~ 439 (779)
+.+.+.+|++.|....+. +..+ |...-+..+.++.+.|++.++..+++++...=. ..+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788999999988877664 2111 112223445666788888888888887776433 3677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPSI-ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (779)
+.++-++.+ ..|-++.+. ..-|. .-|-.|+..|.+.=+.-++.. | ..+-|.......++....-
T Consensus 171 d~~vlmlsr--------SYfLEl~e~-~s~dl~pdyYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKES-MSSDLYPDYYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHh-cccccChHHHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHHHh
Confidence 776655543 234444332 11111 123344444433211111100 0 0112222223333322221
Q ss_pred c--CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCcccHHHHHHHHHhcCC
Q 004006 519 L--KDWANVFAVFEDVMRDGLKPDV-VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR----PTSRTFMPIIHGFARAGE 591 (779)
Q Consensus 519 ~--~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 591 (779)
. .+..--.++++...+.-+.|+. .+...|+..+.+ +.+++..+.+.+....+. --..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111112222222222233332 122333333333 334444333333222110 012345555556666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh-c---CCHHHHHHHHHHHHHCCCCCCHH-HHHHH---HHHH
Q 004006 592 MKRALEIFDMMRRSGCIPTVHTF-------NALILGLVE-K---RQMEKAIEILDEMTLAGISPNEH-TYTTI---MHGY 656 (779)
Q Consensus 592 ~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~-~---~~~~~A~~~~~~m~~~~~~~~~~-~~~~l---i~~~ 656 (779)
...|.+.+..+.-... +...- ..+.+..+. - -+..+=+.+|++....++ |.. .-..| ..-+
T Consensus 314 T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 314 TEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHL 389 (549)
T ss_pred HHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHH
Confidence 6666666665554322 21111 111122221 0 112222334444444332 221 11122 2334
Q ss_pred HhcCC-HHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHc---CChHHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 004006 657 ASLGD-TGKAFEYFTKLRNEGLELDVFTYEA----LLKACCKS---GRMQSALAVTKEMSAQKIPR----NTFVYNILID 724 (779)
Q Consensus 657 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~---g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~ 724 (779)
.+.|. -++|+++++.++... .-|...-|. +=.+|..+ ..+.+-..+-+-+.+.|+.+ +...-|.|.+
T Consensus 390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 55555 677777777777643 223322222 22233221 22333333333444556554 2334455555
Q ss_pred H--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 725 G--WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 725 ~--~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+ +...|++.++.-.-..+.+ +.|...+|..++-+.....++++|+.++.++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4 5567787777766666655 6777778877777777777888888877765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00018 Score=72.37 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=85.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004006 586 FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTGK 664 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~ 664 (779)
+...|++++|+..++.+++..+. |...+......+.+.++..+|.+.++++... .|+ ....-.+..+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 44556666666666666554332 4555555556666666666666666666654 233 3444555566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 665 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 665 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
|+.+++...... +.|...|..|.++|...|+..++.....+ .|+..|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 666666666553 45666666677777666666655544332 34556666666666666665
Q ss_pred cCCCCCHHHH
Q 004006 745 EGVQPDVHTY 754 (779)
Q Consensus 745 ~g~~pd~~~~ 754 (779)
. .+.+..+|
T Consensus 454 ~-~~~~~~~~ 462 (484)
T COG4783 454 Q-VKLGFPDW 462 (484)
T ss_pred h-ccCCcHHH
Confidence 4 33343333
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-05 Score=68.97 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=82.8
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChH
Q 004006 269 EFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDME 348 (779)
Q Consensus 269 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (779)
.|.+++..+|. +......+...+.+.|++++|+..|+.+...+. .+...|..+..++.+.|+++
T Consensus 5 ~~~~~l~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 5 TLKDLLGLDSE---------------QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hHHHHHcCChh---------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH
Confidence 46667777665 334455677778888888888888888877642 36677778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 349 EALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 349 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+|..+++..++.+ +.+...+..+..+|...|++++|+..|++..+..
T Consensus 69 ~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 69 EAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 8888888877764 3367777778888888888888888888877764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00022 Score=78.89 Aligned_cols=133 Identities=12% Similarity=0.131 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (779)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 619 (779)
+...+..|..+..+.|.+++|..+++.+....+. +...+..++..+.+.+++++|+..+++....... +....+.+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 4666666777777777777777777777766544 4555566666677777777777777777665543 5556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 620 GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 675 (779)
++.+.|++++|+.+|+++...+ .-+..++..+..++...|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777777777777777776632 334566666777777777777777777777665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-05 Score=67.41 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
.....+...+...|++++|...|+++...+ +.+...+..+..+|...|++++|..++++..+.+ +.+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 445555566666777777777777776654 3466666777777777777777777777766654 45566666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 727 ARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (779)
...|++++|++.+++.++. .|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 7777777777777777663 3444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00067 Score=62.26 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=128.8
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 004006 520 KDWANVFAVFEDVMRD---G-LKPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKR 594 (779)
Q Consensus 520 ~~~~~a~~~~~~~~~~---g-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 594 (779)
.+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++.+...-+. +...-..-...+.-.|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhh
Confidence 4555666666555432 2 333433 3445555666788888888888888776532 22222222223556788899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 595 ALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 595 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
|+++++.+++.+.. |..++-.-+...-..|+--+|++-+.+..+. +..|...|..+...|...|++++|.-++++++-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999888887643 6666666666666667767888888887765 467888899999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCC
Q 004006 675 EGLELDVFTYEALLKACCKSG---RMQSALAVTKEMSAQK 711 (779)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 711 (779)
.. +-+...+..+.+.+.-.| +++.|.+++.+.++.+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 65 456667777777766555 4677888888888764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.007 Score=60.53 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=83.5
Q ss_pred hhcccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004006 245 RWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRA 324 (779)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (779)
+++..|.|++ ..|-++|.++......+-- + |+ -...-+.++++|...+ .+.....+..+.+
T Consensus 13 gf~Lqkq~~~---------~esEkifskI~~e~~~~~f-~---lk-----eEvl~grilnAffl~n-ld~Me~~l~~l~~ 73 (549)
T PF07079_consen 13 GFILQKQKKF---------QESEKIFSKIYDEKESSPF-L---LK-----EEVLGGRILNAFFLNN-LDLMEKQLMELRQ 73 (549)
T ss_pred hHHHHHHhhh---------hHHHHHHHHHHHHhhcchH-H---HH-----HHHHhhHHHHHHHHhh-HHHHHHHHHHHHH
Confidence 4456666776 8899999998865432100 0 00 0122345677776443 4444444444444
Q ss_pred CCCCCCHhhHHHHHHH--HHccCChHHHHHHHHHHHHc--CCC------------CCHhHHHHHHHHHHccCCHHHHHHH
Q 004006 325 RGIEPTLHVYTNLIHA--YAVGRDMEEALSCVRKMKEE--GIE------------MSLVTYSIIVGGFAKMGNAEAADHW 388 (779)
Q Consensus 325 ~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~--g~~------------~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (779)
.. + ...|-.+..+ +.+.+.+.+|++.+..-.+. +.. .|.+.=++.+.++.+.|++.+++.+
T Consensus 74 ~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 74 QF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred hc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 31 1 2333333333 33567888888777655443 111 1223345667778888888888888
Q ss_pred HHHHHHc----CCCCChhhHHHHHHHHHh
Q 004006 389 FEEAKER----HATLNAIIYGNIIYAQCQ 413 (779)
Q Consensus 389 ~~~~~~~----~~~~~~~~~~~l~~~~~~ 413 (779)
++++..+ ....+..+|+.++..+.+
T Consensus 151 Ln~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 151 LNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 8777654 344778888876655543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0034 Score=57.79 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=68.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (779)
..++-+....|+.+-|..+++.+... ++-+..+-..-...+--.|.+++|+++|+.+.+.++. |..++..-+.+.-..
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHc
Confidence 33333444444555555555544433 2212222222222233344555555555555544322 444444444444444
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC---CHHHHH
Q 004006 415 RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG---KVSKAL 491 (779)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~ 491 (779)
|+.-+|++-+.+..+. +..|...|..+.+.|...|++++|.-.++++.-... -+...+..+.+.+.-.| +++.+.
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP-FNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444443 234445555555555555555555555555444311 12333333443332222 334445
Q ss_pred HHHHHHHHC
Q 004006 492 EVSKVMKSS 500 (779)
Q Consensus 492 ~~~~~m~~~ 500 (779)
++|.+..+.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 555554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.001 Score=65.45 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=54.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 586 FARAGEMKRALEIFDMMRRSG---CIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDT 662 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 662 (779)
..+.|.+.+|.+.|.+.+... ..++...|........+.|+..+|+.--++..+.+ .--...|..-..++...+++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHH
Confidence 456777888888887777643 23445556666666677777777777766665432 00112233333445566777
Q ss_pred HHHHHHHHHHHHcC
Q 004006 663 GKAFEYFTKLRNEG 676 (779)
Q Consensus 663 ~~a~~~~~~~~~~~ 676 (779)
++|.+-|++..+..
T Consensus 338 e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHhhc
Confidence 77777777776653
|
|
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-06 Score=87.81 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=72.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..++|+--+...+++.+|+++|+.+|.|.+|+||.| +.+++++|.++|+|.+.+++..|| +| .|..+.|.+|.|..
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aL--sGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-AL--SGQRLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecc-ccchhhcceeEEEEecccchhhHh-hh--cCCcccCceeEecc
Confidence 349999999999999999999999999999999999 999999999999999999999999 56 89999999999986
Q ss_pred c
Q 004006 231 D 231 (779)
Q Consensus 231 ~ 231 (779)
.
T Consensus 255 s 255 (549)
T KOG0147|consen 255 S 255 (549)
T ss_pred c
Confidence 4
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=76.28 Aligned_cols=280 Identities=17% Similarity=0.135 Sum_probs=127.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HC--CCC-CCHHHHHHHHHH
Q 004006 479 NLYTKIGKVSKALEVSKVMKSSGIK---HNMKTYSMLINGFLKLKDWANVFAVFEDVM--RD--GLK-PDVVLYNNIIRA 550 (779)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~l~~~ 550 (779)
.-+++.|+......+|+..++.|-. .-..+|+.|.++|.-.++|++|+++...=+ .. |-+ -..-....|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4578899999999999998887632 113456677788888888888887654311 10 100 011223334444
Q ss_pred HHhCCCHHHHHHHHHH----HHHcCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHh
Q 004006 551 FCGMGNMDRAIHIVKE----MQKERHR-PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCI-P-TVHTFNALILGLVE 623 (779)
Q Consensus 551 ~~~~g~~~~A~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~ 623 (779)
+--.|.+++|+....+ ..+.|-. .....+..|...|...|+-- |+. | +...++.-+.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~------------g~~~pee~g~f~~ev~---- 168 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCT------------GLEAPEEKGAFNAEVT---- 168 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccccc------------CCCChhhcccccHHHH----
Confidence 4455566665543222 1222211 12223333334443322210 000 0 0000000000
Q ss_pred cCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHH
Q 004006 624 KRQMEKAIEILDEMT----LAGIS-PNEHTYTTIMHGYASLGDTGKAFEYFTKLR----NEGLE-LDVFTYEALLKACCK 693 (779)
Q Consensus 624 ~~~~~~A~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~ 693 (779)
..++.|.++|.+-+ ..|-. .-...|..|...|.-.|+++.|+...+.=+ +.|-+ .....+..|..++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 00222333333211 11100 011234444455555566666665554322 22211 123345556666666
Q ss_pred cCChHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHh
Q 004006 694 SGRMQSALAVTKEMSA----QK-IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ----EG-VQPDVHTYTSFINACKC 763 (779)
Q Consensus 694 ~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g-~~pd~~~~~~l~~a~~~ 763 (779)
.|+++.|.+.++.... .| -.....+..+|.+.|.-..++++|+.++.+-+. .+ ..-....+-+|.+++..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 6666666666554432 11 012223445566666666666666666554321 11 11133455566666666
Q ss_pred cCCcchHHHhHh
Q 004006 764 SKSNQRNGRSWS 775 (779)
Q Consensus 764 ~g~~~~a~~~~~ 775 (779)
.|..++|..+.+
T Consensus 328 lg~h~kAl~fae 339 (639)
T KOG1130|consen 328 LGEHRKALYFAE 339 (639)
T ss_pred hhhHHHHHHHHH
Confidence 666666665543
|
|
| >PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=62.40 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=67.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhc--cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee----ceE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQ--FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH----GRV 225 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~----~~~ 225 (779)
++|-|.|+|...|.++|.+++.. .|...-+.+..| ..++.+.|||||-|.+.+.+.+-.+.+ +|.... .|.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD-f~~~~N~GYAFVNf~~~~~~~~F~~~f--~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID-FKNKCNLGYAFVNFTSPQAAIRFYKAF--NGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee-ccCCCceEEEEEEcCCHHHHHHHHHHH--cCCccccCCCCcE
Confidence 48999999999999999988864 367777888888 888999999999999999999999999 999874 666
Q ss_pred EEEEecC
Q 004006 226 LTVKLDD 232 (779)
Q Consensus 226 ~~v~~~~ 232 (779)
+.|.+|+
T Consensus 79 c~i~yAr 85 (97)
T PF04059_consen 79 CEISYAR 85 (97)
T ss_pred EEEehhH
Confidence 7777763
|
It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO). |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00029 Score=70.13 Aligned_cols=200 Identities=16% Similarity=0.213 Sum_probs=87.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEP-T----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.+.|-..|++++|...|.+........ + ...|.....+|.+. ++++|.+.+++.. ..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~---------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI---------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH---------------HHHH
Confidence 455556666777766666654321100 0 01223333333222 5555555444433 3455
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCC
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT-RNMERAEALVRDMEEE----GID-APIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 451 (779)
+.|++..|-+++.++- ..|.+. |++++|++.|++..+. +.. .-...+..+...+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 5555555555444432 234444 5566666655555432 100 001233444555666666
Q ss_pred HHHHHHHHHHHHHCCCCC-----CHh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHh--c
Q 004006 452 EEKCLIVFERLKECGFSP-----SII-SYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHN--MKTYSMLINGFLK--L 519 (779)
Q Consensus 452 ~~~a~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~--~~~~~~ll~~~~~--~ 519 (779)
+++|+++|+++...-..- +.. .|-..+-++...|+...|.+.++...... +..+ ......||.+|-. .
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 666666666665432111 111 12223334455566666666666655431 2111 2233444455433 2
Q ss_pred CCHHHHHHHHHHHH
Q 004006 520 KDWANVFAVFEDVM 533 (779)
Q Consensus 520 ~~~~~a~~~~~~~~ 533 (779)
..+++++.-|+.+.
T Consensus 251 e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 251 EAFTEAVAEYDSIS 264 (282)
T ss_dssp CCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHcccC
Confidence 34455555554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.005 Score=64.56 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSA-QKIPRNTFVYNILIDGWARRGDVWEAAD 737 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 737 (779)
..+.|..|.+--...|+++.|++.--.+.+ .++-|-..+|+.|.-+-+....+.-.-+
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence 455666666667778888888776544443 2455667777766655554444433333
|
|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.6e-05 Score=89.58 Aligned_cols=9 Identities=11% Similarity=0.645 Sum_probs=4.4
Q ss_pred ccCCCcCCh
Q 004006 157 GNLPNWIKK 165 (779)
Q Consensus 157 ~~l~~~~~~ 165 (779)
..++.|+++
T Consensus 3002 ~~~~~w~~~ 3010 (3151)
T PHA03247 3002 SRVSSWASS 3010 (3151)
T ss_pred CCcchhhhh
Confidence 445555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0046 Score=64.83 Aligned_cols=345 Identities=12% Similarity=0.110 Sum_probs=188.1
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH----------HHhcCChHHHHHHHHHHHHcCC
Q 004006 363 EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA----------QCQTRNMERAEALVRDMEEEGI 432 (779)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~ 432 (779)
.|....|..|...-.+.-.++.|+..|-+...-. -......|... -.--|.+++|+++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 3677888888888777778888888877664321 11111111111 122488899999888887764
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004006 433 DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKT 508 (779)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 508 (779)
..+..+.+.|++-....++. .-|-..| ...|+.+...+.....+++|.++|..-..
T Consensus 765 --------LAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 24566777888766555443 2221112 34688888888888888888888865432
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 004006 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588 (779)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (779)
....+.+|.+..++++...+...+.+ |....-.+..++.+.|.-++|.+.|-+.-. . ...+..|..
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~ 890 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVE 890 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHH
Confidence 12356666667777776666555433 555667788889999999998887754321 1 244567788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 004006 589 AGEMKRALEIFDMMRRSGCIPTVHTFN--------------ALILGLVEKRQMEKAIEILDEMTLA----GISPNEHTYT 650 (779)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~ 650 (779)
.++|.+|.++-+...- |.+.+.- .-|..+.+.|+.-+|.+++.+|.+. +.++-..--.
T Consensus 891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 8888888877655432 2222221 1233444555555566666665432 2222111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (779)
.++.++. ..+..++.+-.++....|..-+... +...|-+.++-++.+..-. -....+|-.|..--...|
T Consensus 967 YVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen 967 YVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred HHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhc
Confidence 1121211 1222333333333333443222211 1223333333333332211 122334444555566788
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 004006 731 DVWEAADLMQQMKQE-GVQPDVHTYTSFINA 760 (779)
Q Consensus 731 ~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~a 760 (779)
..+.|++.--.+.+. .+-|...+|..|.-+
T Consensus 1036 ~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred hHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 999888865555432 355666677655443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.7e-05 Score=76.04 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.....|++.+...++++.|+++|+++.+.. |+ ....|+..+...++-.+|++++++..+.... +.......+..+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444555555566666666666665542 22 3334555555556666666666666554322 444444555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
.+.++++.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666666666652 3445566666666666666666666665543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.3e-05 Score=76.18 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=100.8
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (779)
+...-..|+..+...++++.|+++|+++.+.. ......++.++...++..+|++++.+..+.. +.+...+.....
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444556677777888999999999998874 3345567788888888889999998888763 556777777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 445 GYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
.+.+.++++.|+++.+++.+.... +..+|..|..+|.+.|+++.|+-.++.+--
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888999999999999998886322 456899999999999999999988887654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00055 Score=67.23 Aligned_cols=156 Identities=9% Similarity=-0.043 Sum_probs=91.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAG---ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 695 (779)
+-.++.|++.+|.+.|.+.+..+ +.++...|.....+..++|+.++|+.--++.++.. .--...|..-..++...+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHH
Confidence 44678899999999999988543 45666778888888889999999999888887753 111223333345566678
Q ss_pred ChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCcchHH
Q 004006 696 RMQSALAVTKEMSAQKIP-RNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINAC---KCSKSNQRNG 771 (779)
Q Consensus 696 ~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~---~~~g~~~~a~ 771 (779)
.|++|.+-+++.....-. ....++.-...++.+..+.+ =.+++--.......++...|..+.-++ ..+|...+|.
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE 414 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAE 414 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHH
Confidence 899999999888764311 12234443344444333311 112222222222234445554333222 2245556666
Q ss_pred HhHhh
Q 004006 772 RSWSE 776 (779)
Q Consensus 772 ~~~~~ 776 (779)
..|++
T Consensus 415 ~kFke 419 (486)
T KOG0550|consen 415 AKFKE 419 (486)
T ss_pred HHHHH
Confidence 66654
|
|
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-06 Score=88.21 Aligned_cols=83 Identities=29% Similarity=0.537 Sum_probs=77.6
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...+++|||+||...++..+.++...||.++..+++.| ..+|-++||+|.+|.+..-...|++.+ ||..++++.+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d-~~~g~skg~af~ey~dpsvtd~A~agL--nGm~lgd~~lvv 363 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD-SATGNSKGFAFCEYCDPSVTDQAIAGL--NGMQLGDKKLVV 363 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecc-cccccccceeeeeeeCCcchhhhhccc--chhhhcCceeEe
Confidence 34459999999999999999999999999999999999 888999999999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
..|...
T Consensus 364 q~A~~g 369 (500)
T KOG0120|consen 364 QRAIVG 369 (500)
T ss_pred ehhhcc
Confidence 987554
|
|
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=70.19 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=54.6
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
+...+|||.||..++||++|+.+|+.|..+..++|-.. .| -..+|++|++.+.|..|+..| +|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~g--~~vaf~~~~~~~~at~am~~l--qg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---GG--MPVAFADFEEIEQATDAMNHL--QGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---CC--cceEeecHHHHHHHHHHHHHh--hccee
Confidence 33448999999999999999999999998887777432 23 348999999999999999888 88766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0002 Score=63.16 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=11.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+...+...|++++|...|+.+...
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh
Confidence 334444444444444444444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00038 Score=61.37 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChH
Q 004006 624 KRQMEKAIEILDEMTLAGISPN---EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQ 698 (779)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 698 (779)
.++...+...++.+.... ..+ ....-.+...+...|++++|...|+.+.+....+. ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555566655666655542 111 12222334555566666666666666665541111 123344555566666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+|+..++..... ......+..++++|.+.|++++|+..|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666553222 23334455566666666666666666654
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1e-05 Score=75.88 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=67.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccC--CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.++|||||-|++|++||.+....-| .|.++++..+ +.+|++||||.|...+..++++.++.| --+.|+|+.=.|-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN-R~NGQSKG~AL~~~~SdAa~Kq~MeiL--P~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN-RTNGQSKGYALLVLNSDAAVKQTMEIL--PTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc-ccCCcccceEEEEecchHHHHHHHHhc--ccceecCCCCeee
Confidence 3899999999999999999988776 5778888888 889999999999999999999999999 8889998876664
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00017 Score=70.40 Aligned_cols=113 Identities=18% Similarity=0.107 Sum_probs=75.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCChHHHHHHHHHH--HH--cCCC-CCHhHHHHHH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLH----VYTNLIHAYAVGRDMEEALSCVRKM--KE--EGIE-MSLVTYSIIV 373 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~-~~~~~~~~l~ 373 (779)
..-+++.|+.+..+.+|+.+++-|-. |.. +|..|.++|.-.++|++|++....= +. .|-. -...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45688999999999999999998743 443 4777788888889999999875431 11 1101 1344556677
Q ss_pred HHHHccCCHHHHHHHHHHH----HHcCC-CCChhhHHHHHHHHHhcCC
Q 004006 374 GGFAKMGNAEAADHWFEEA----KERHA-TLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~ 416 (779)
+.+.-.|.|++|+-+..+- .+.|- .....+++.+..+|...|+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 7788888999887654432 22221 1234567778888876554
|
|
| >PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.9e-05 Score=61.98 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=48.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhC---CceeeceEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD---GVEFHGRVLT 227 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~---g~~~~~~~~~ 227 (779)
++-|+|.+++..++-++|++.|++||.|..|.+.++ ..-|||-|.+.++|+.|+..+... +..+.+..++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 357889999999999999999999999999999876 458999999999999999998666 6677787777
Q ss_pred EEec
Q 004006 228 VKLD 231 (779)
Q Consensus 228 v~~~ 231 (779)
+..-
T Consensus 74 ~~vL 77 (105)
T PF08777_consen 74 LEVL 77 (105)
T ss_dssp EE--
T ss_pred EEEC
Confidence 7654
|
It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00072 Score=58.28 Aligned_cols=91 Identities=7% Similarity=-0.114 Sum_probs=44.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
.+...+...|++++|+.+|+.+...++. +...|..|..++-..|++++|++.|......+ +.+...+..+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3334444455555555555555544333 44455555555555555555555555555444 234444444455555555
Q ss_pred CHHHHHHHHHHHH
Q 004006 451 NEEKCLIVFERLK 463 (779)
Q Consensus 451 ~~~~a~~~~~~~~ 463 (779)
+.+.|++.|+..+
T Consensus 118 ~~~~A~~aF~~Ai 130 (157)
T PRK15363 118 NVCYAIKALKAVV 130 (157)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
|
|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.1e-05 Score=77.03 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=64.6
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.-|-+.+|||.+|++||.++|+.++ |+.+.+. +.+||..|-|||+|.+++++++|++. +...++.|.|.|--+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~---r~~Gr~sGeA~Ve~~seedv~~Alkk---dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIP---RRNGRPSGEAYVEFTSEEDVEKALKK---DRESMGHRYIEVFTA 83 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEe---ccCCCcCcceEEEeechHHHHHHHHh---hHHHhCCceEEEEcc
Confidence 4677789999999999999999976 5666665 45799999999999999999999976 788999999998655
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
...
T Consensus 84 ~~~ 86 (510)
T KOG4211|consen 84 GGA 86 (510)
T ss_pred CCc
Confidence 433
|
|
| >KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00087 Score=66.99 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=11.7
Q ss_pred eccCCCcCChHHHHHHHhccCCeeEE
Q 004006 156 VGNLPNWIKKHLVMEFFRQFGPIKNV 181 (779)
Q Consensus 156 v~~l~~~~~~~~l~~~f~~~g~i~~~ 181 (779)
...|+..-..++|..-..+-|.++.|
T Consensus 486 ~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 486 TTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred eccCcCcccHHHHHHHHHhccccccc
Confidence 33444333444554444444555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.86 E-value=3e-05 Score=48.87 Aligned_cols=33 Identities=45% Similarity=0.827 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 718 VYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (779)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (779)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00049 Score=70.74 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=54.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 004006 618 ILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRM 697 (779)
Q Consensus 618 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (779)
...+...|++++|+.+|+++++.+ ..+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344555666666666666666543 3344555556666666666666666666666554 33555566666666666666
Q ss_pred HHHHHHHHHHHhCC
Q 004006 698 QSALAVTKEMSAQK 711 (779)
Q Consensus 698 ~~A~~~~~~~~~~~ 711 (779)
++|+..|+++.+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666665543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0003 Score=72.04 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004006 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE--GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYN 720 (779)
Q Consensus 643 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 720 (779)
..+...+..+++.+....+.+.+..++-+.+.. ....-..|..++++.|.+.|..++++.+++.=...||-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 455566666677766666677777777776654 222223344577777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 721 ILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
.|++.+.+.|++..|.++..+|...+.-.+..|+...+.+|++-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777666555555666666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00041 Score=59.75 Aligned_cols=97 Identities=6% Similarity=-0.129 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.....+...+...|++++|..+|+-+...+. .+..-|..|..++-..|++++|+..|.++...++. |...+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 3444555555667777777777777766542 25666777777777777777777777777777654 777777777777
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 004006 412 CQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~ 430 (779)
...|+.+.|++.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7778877777777776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.6e-05 Score=60.38 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=40.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIE-PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
+|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|+.++++ .+.+. .+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566666666666655321 1223344455666666666666666655 22211 122333444555666666666666
Q ss_pred HHHH
Q 004006 388 WFEE 391 (779)
Q Consensus 388 ~~~~ 391 (779)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0016 Score=64.90 Aligned_cols=167 Identities=17% Similarity=0.266 Sum_probs=88.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 338 IHAYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+.|...|++++|.+.|.+..+. +-.. -...|.....+|.+. ++++|++.|+++. ..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~---------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI---------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH---------------HHHH
Confidence 34556667777777777665431 1000 112233333333333 6666665555543 4567
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHHcCC
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIGK 486 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~ 486 (779)
..|++..|-+++.++- ..|... |++++|++.|.+..+. |..- -..++..++..+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 7777777766665543 455566 7888888888776542 2100 12345566777778888
Q ss_pred HHHHHHHHHHHHHCCCCCC-----HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 487 VSKALEVSKVMKSSGIKHN-----MK-TYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
+++|.++|+++.......+ .. .|-..+-++...||...|...|++....
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888877765432211 11 1222333445567777777777776544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0076 Score=58.05 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHV---YTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
+......+.+.|++++|++.|+.+...... +... .-.++.++.+.+++++|...|++.++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333444444555555555555555554211 1111 123344455555555555555555543
|
|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=7e-05 Score=67.02 Aligned_cols=73 Identities=21% Similarity=0.427 Sum_probs=66.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEEEEe
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~v~~ 230 (779)
..+|+.|||.+++.+.+..+|.+|+..++++++.. + +|.+||+|.+...+..|...+ +|..+. ...++|.+
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-~-----~~iAfve~~~d~~a~~a~~~l--q~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-R-----SGIAFVEFLSDRQASAAQQAL--QGFKITKKNTMQITF 218 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-C-----CceeEEecchhhhhHHHhhhh--ccceeccCceEEecc
Confidence 48999999999999999999999999999999975 2 689999999999999999999 999986 88888887
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 64
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00034 Score=71.64 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=109.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 004006 282 QAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR--GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (779)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (779)
..+...|.+....+.....++++.+....+.+++..++-+.... ....-..+.+++++.|.+.|..++++++++.=+.
T Consensus 52 ~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~ 131 (429)
T PF10037_consen 52 SELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ 131 (429)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh
Confidence 34455566666778888888999998888899999999988775 2222335678999999999999999999999999
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 360 EGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 360 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (779)
.|+-||.++++.|++.+.+.|++..|.++...|..++...+..++...+.+|.+.
T Consensus 132 yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 132 YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998887766777776666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00035 Score=55.52 Aligned_cols=80 Identities=16% Similarity=0.319 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCHhHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGR--------DMEEALSCVRKMKEEGIEMSLVTY 369 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~ 369 (779)
....|..+...|++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34467777778999999999999999999 899999999999987653 344678899999999999999999
Q ss_pred HHHHHHHHc
Q 004006 370 SIIVGGFAK 378 (779)
Q Consensus 370 ~~l~~~~~~ 378 (779)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.015 Score=56.06 Aligned_cols=67 Identities=6% Similarity=-0.057 Sum_probs=43.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT---YSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
...+-.....+.+.|++++|.+.|++++..-.. +... ...++.+|.+.+++++|+..|++..+..+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 333434444555678888888888888775322 2222 245667777888888888888888776544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00043 Score=55.79 Aligned_cols=94 Identities=27% Similarity=0.214 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
+..+...+...|++++|+..|+++.+... .+..++..+..++...+++++|.+.|+...+... .+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 44456666677777777777777766532 2335566666666666777777777776666432 244566666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKE 394 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~ 394 (779)
.|++++|...|.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666666554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00083 Score=56.97 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIV 373 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~ 373 (779)
++..++..+.+.|++++|++.|+.+...... .....+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666667777777777766654211 01234555666666666666666666666653211 1134455566
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.++.+.|++++|+..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.5e-05 Score=54.73 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=47.7
Q ss_pred eEEeccCCCcCChHH----HHHHHhccCC-eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 153 KIFVGNLPNWIKKHL----VMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~----l~~~f~~~g~-i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
-|+|.|||.+.+... |++++..||. |.+| . .|.|+|-|.+.+.|.+|.+.| +|-.+-|++|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---------~~tAilrF~~~~~A~RA~KRm--egEdVfG~kI~ 70 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---------GGTAILRFPNQEFAERAQKRM--EGEDVFGNKIS 70 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHH--TT--SSSS--E
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---------CCEEEEEeCCHHHHHHHHHhh--cccccccceEE
Confidence 689999999888765 4677778875 4443 1 589999999999999999999 99999999999
Q ss_pred EEecC
Q 004006 228 VKLDD 232 (779)
Q Consensus 228 v~~~~ 232 (779)
|++..
T Consensus 71 v~~~~ 75 (90)
T PF11608_consen 71 VSFSP 75 (90)
T ss_dssp EESS-
T ss_pred EEEcC
Confidence 99873
|
Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.01 Score=54.86 Aligned_cols=133 Identities=10% Similarity=0.089 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-----hhHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA-----IIYGN 406 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~ 406 (779)
.+.+.++.++.-.|.|.-.+.++.+.++...+.+......|++.-.+.|+.+.|...|++..+.....|. .+..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4556666777777777777777777777665666777777777777777777777777766543222222 22333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
....|...+++.+|...+.++...+ +.+....|.-.-+....|+..+|++.++.|++.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455555666666665555543 233333344444444455555555555555543
|
|
| >KOG1995 consensus Conserved Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.6e-05 Score=74.66 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=75.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCee--------EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
....++||-+|+..++++++..+|.+||.|+ .|.|-+| +.|++.||-|-|+|++...|++|+.-+ ++..
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~d-keT~~~KGeatvS~~D~~~akaai~~~--agkd 140 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTD-KETGAPKGEATVSYEDPPAAKAAIEWF--AGKD 140 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccc-ccccCcCCceeeeecChhhhhhhhhhh--cccc
Confidence 3345999999999999999999999999985 3778888 799999999999999999999999999 9999
Q ss_pred eeceEEEEEecCCcc
Q 004006 221 FHGRVLTVKLDDGRR 235 (779)
Q Consensus 221 ~~~~~~~v~~~~~~~ 235 (779)
++|..|+|..+..+.
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999998876554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.5e-05 Score=46.88 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 717 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (779)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.7e-05 Score=47.54 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=16.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS 365 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 365 (779)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.4e-05 Score=58.99 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=40.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (779)
.|++++|+.+|+++.+.... ++...+..++.+|.+.|++++|+.++++ .+.+.. +......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666654321 1333444456666666666666666655 222111 23333344555556666666665
Q ss_pred HHHH
Q 004006 423 LVRD 426 (779)
Q Consensus 423 ~~~~ 426 (779)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00052 Score=64.91 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=68.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
.+-+.+.++|++|+..|.++++... .|.+.|..-..+|.+.|.++.|++-.+..+..+. --..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcH
Confidence 4556677888888888888887743 2666677777888888888888887777776431 1366788888888888888
Q ss_pred HHHHHHHHHHHHcCC
Q 004006 383 EAADHWFEEAKERHA 397 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~ 397 (779)
++|++.|.+.++.++
T Consensus 166 ~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 166 EEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHHhhhccCC
Confidence 888888888877643
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0012 Score=56.06 Aligned_cols=97 Identities=9% Similarity=0.039 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHH
Q 004006 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL--NAIIYGNIIY 409 (779)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 409 (779)
+..+...+.+.|++++|.+.|+.+++.... .....+..++.++.+.|++++|+..|+.+....... ...++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555556666666666665543211 012344455555556666666666666555432221 1334555555
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 004006 410 AQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00089 Score=68.83 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=45.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
...+...|++++|+.+|+++++.+.. +...|..+..+|.+.|++++|+..++++++... .+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 34444555555555555555554321 344444555555555555555555555554421 1344455555555555555
Q ss_pred HHHHHHHHHHHHc
Q 004006 383 EAADHWFEEAKER 395 (779)
Q Consensus 383 ~~A~~~~~~~~~~ 395 (779)
++|+..|+++++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00044 Score=65.33 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (779)
+-+.+.++|.+|+..|.+.++.. +-|.+.|..-..+|.++|.++.|++-.+..+... +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 34566777777777777777654 4456666677777777777777777777777654 234557777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHH
Q 004006 699 SALAVTKEMSAQKIPRNTFVY 719 (779)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~ 719 (779)
+|.+.|++.++. .|+..+|
T Consensus 167 ~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHH
Confidence 777777777664 3555555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00063 Score=67.31 Aligned_cols=130 Identities=14% Similarity=0.179 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 367 VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ-TRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (779)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (779)
.+|..+++...+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777766432 2234444444444223 44445566666666654 34455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 446 YTIIGNEEKCLIVFERLKECGFSPS---IISYGCLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
+...++.+.|..+|++.... +..+ ...|..+++.-.+.|+++.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666543 2211 23566666666666666666666666555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00069 Score=54.52 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (779)
.+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|.+.++...... +.+...+..++..+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444455555555555555555443 2233444555555555555566665555555443 233345555555555666
Q ss_pred CHHHHHHHHHHHHH
Q 004006 731 DVWEAADLMQQMKQ 744 (779)
Q Consensus 731 ~~~~A~~~~~~m~~ 744 (779)
++++|..++++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666665555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0016 Score=59.26 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
...|..++..+...|++++|+..|++.......+ ...++..+..+|...|++++|+..+++.+... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456777888888999999999999988763322 22478888888999999999999999888753 23456666777
Q ss_pred HHHH-------ccCCHHHHHHHHHH
Q 004006 374 GGFA-------KMGNAEAADHWFEE 391 (779)
Q Consensus 374 ~~~~-------~~g~~~~A~~~~~~ 391 (779)
..|. +.|++++|+..|++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 7776 66666655544443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0024 Score=58.28 Aligned_cols=129 Identities=19% Similarity=0.141 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPN--EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 689 (779)
..+..+...+...|++++|+.+|++.+.....+. ...+..+...|.+.|++++|+..++++++.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455556666666777777777776664432221 2455666666666677777777666666653 234555555666
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004006 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKS 766 (779)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~ 766 (779)
+|...|+...+..-++.... .+++|.+++++..+. .|+. |..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 66666655444433332211 156677777776653 3333 5555555555554
|
|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=68.87 Aligned_cols=82 Identities=22% Similarity=0.440 Sum_probs=64.7
Q ss_pred cceEEeccCCCcCChHHH------HHHHhccCCeeEEEEecCCCCCCCCcc-e-EEEEeCCHHHHHHHHHHhhhCCceee
Q 004006 151 EGKIFVGNLPNWIKKHLV------MEFFRQFGPIKNVILIKGYNNFEKNVG-F-GFVIYDGPAAEKSAMKAVEFDGVEFH 222 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l------~~~f~~~g~i~~~~~~~~~~~~~~~~g-~-~fv~f~~~~~a~~a~~~~~~~g~~~~ 222 (779)
..-+||-+|++.+..++. .++|.+||.|+.+.|.+......-..| + .+|+|.+.++|.++|.+. +|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v--Dgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV--DGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh--cccccc
Confidence 346899999999888873 579999999998877764211111123 2 299999999999999999 999999
Q ss_pred ceEEEEEecCCc
Q 004006 223 GRVLTVKLDDGR 234 (779)
Q Consensus 223 ~~~~~v~~~~~~ 234 (779)
||.|+..+...+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999987655
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.6e-05 Score=46.55 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=15.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIE 363 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 363 (779)
+|+.+|.+|++.|+++.|+++|+.|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4445555555555555555555555444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.002 Score=58.81 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (779)
....+..+...|...|++++|+..|++..+....+. ...+..+..++.+.|++++|+..+++.++... -+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 445677888899999999999999999987643322 35788888999999999999999999988642 356777788
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
+.+|...|+...+..-++.+.. .+++|.+++++....+ | ..+..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--P--NNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--c--hhHHHHHHHHHhcCc
Confidence 8888888886666554444332 2566677777766653 1 224455555554443
|
|
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0014 Score=68.06 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=64.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeE-EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..+..|||..||..+++.++.+.|..--.|++ |.|.. .-+++-++-|||+|..++.+..|..-- +.+.++.|.|+
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~--~P~~~~~~~afv~F~~~~a~~~a~~~~--~k~y~G~r~ir 507 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR--LPTDLLRPAAFVAFIHPTAPLTASSVK--TKFYPGHRIIR 507 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEecc--CCcccccchhhheeccccccchhhhcc--cccccCceEEE
Confidence 34569999999999999999999998777777 55544 467888999999999988887776544 67778899999
Q ss_pred EEec
Q 004006 228 VKLD 231 (779)
Q Consensus 228 v~~~ 231 (779)
|.-.
T Consensus 508 v~si 511 (944)
T KOG4307|consen 508 VDSI 511 (944)
T ss_pred eech
Confidence 9743
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=59.87 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL--DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (779)
..|..+...+...|++++|+..|++.+.....+ ...++..+..+|...|++++|+..+++..... +.....+..++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555666666777777666666543221 22456666667777777777777777666543 334445555555
Q ss_pred HHH-------hcCCHHHHHHHHHHH
Q 004006 725 GWA-------RRGDVWEAADLMQQM 742 (779)
Q Consensus 725 ~~~-------~~g~~~~A~~~~~~m 742 (779)
++. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 555 667776555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.026 Score=52.33 Aligned_cols=130 Identities=14% Similarity=0.104 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----H
Q 004006 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEAL-----L 688 (779)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~ 688 (779)
.+.++..+.-.|.+.-.+.++++.++.+.+-+......|+..-.+.||.+.|..+|++..+..-+.|..+++.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34444444555555555555665555443444455555555555566666666666554433222222222222 2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|.-++++.+|...+.++...+ +.|...-|.-.-++.-.|+..+|++.++.|++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23334445555555555555443 33444444444444445566666666666655
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.14 Score=53.89 Aligned_cols=412 Identities=13% Similarity=0.102 Sum_probs=199.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+...|+.||..--.....+.++..++.++.. -|... -|-.....=.+.|..+.+.++|++-+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666776655555567777777777755 34443 4555555556778888888888888763 677777777766
Q ss_pred HHHH-ccCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--
Q 004006 374 GGFA-KMGNAEAADHWFEEAKERHA--TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-- 448 (779)
Q Consensus 374 ~~~~-~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 448 (779)
..++ ..|+.+...+.|+.+...-. -.....|...|..-..++++.....+++++++.- ...++.....|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 6555 44677778888888776421 1245567777777777788888888888877641 2222222222211
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH-------HHHHHh
Q 004006 449 -IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM--KTYSML-------INGFLK 518 (779)
Q Consensus 449 -~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l-------l~~~~~ 518 (779)
.... .-+.-++...+... + +... ......+. .+..+=..+...+...+. ...+.+ -.+|..
T Consensus 197 ~~~~~-~~l~~~d~~~~l~~--~--~~~~--~~~~~~~~--~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~ 267 (577)
T KOG1258|consen 197 NQNEE-KILLSIDELIQLRS--D--VAER--SKITHSQE--PLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQK 267 (577)
T ss_pred hcCCh-hhhcCHHHHHHHhh--h--HHhh--hhcccccC--hhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1110 00111111111000 0 0000 00000011 111111111111100010 011111 112222
Q ss_pred cCCHHHHHHHHHHHHHCC---CC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 004006 519 LKDWANVFAVFEDVMRDG---LK----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGE 591 (779)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (779)
.....+....|+.-++.- ++ .+..+|..-+.--.+.|+.+.+..+|+...-- +..-...|-..+.-....|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCc
Confidence 223333333344333321 11 23456666666667777777777777765431 01112233333333444577
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH--
Q 004006 592 MKRALEIFDMMRRSGCI--PTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH-TYTTIMHGYASLGDTGKAF-- 666 (779)
Q Consensus 592 ~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~-- 666 (779)
.+-+..++....+..++ |....+.+.+ .-..|+++.|..+++...+.- |+.. .-..-+....+.|+.+.+.
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 77777666665554332 2233333222 223467777777777776542 3322 1112223334556666655
Q ss_pred -HHHHHHHHcCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004006 667 -EYFTKLRNEGLELDVFTYEALLKA-----CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (779)
Q Consensus 667 -~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (779)
+++....+. .-+..+...+.-- +.-.++.+.|..++.++.+.. +.+...|..++......+
T Consensus 423 ~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 333333222 2222233333222 223566777777777776653 556666666666655544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=64.33 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV-GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
+|..+++..-+.+..+.|+.+|.++.+.+ .-+..+|-.....-.+ .++.+.|.++|+..++. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46677777777777888888888887543 2234444444444223 45666688888887775 555777788888888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 377 AKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
.+.|+.+.|..+|++.... ...+ ...|..++..-.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888887765 2211 236666666666666666666666666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.16 Score=53.44 Aligned_cols=398 Identities=13% Similarity=0.077 Sum_probs=223.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
+.++..|+..|...|-.+. -|......=.+.|..+.+.++|++.+. ++.-++..|...+..+..
T Consensus 62 ~~~r~~y~~fL~kyPl~~g---------------yW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYG---------------YWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred HHHHHHHHHHHhhCccHHH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc
Confidence 6677888888887775321 244455666678899999999999986 467788888888877654
Q ss_pred -cCChHHHHHHHHHHHHc-CCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc------
Q 004006 344 -GRDMEEALSCVRKMKEE-GIE-MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT------ 414 (779)
Q Consensus 344 -~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 414 (779)
.|+.+...++|+..+.. |.. .+...|-..+..-...+++.....+|+++++.-.. ....|...-.-+.+.
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~-~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH-QLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHhcCChhhh
Confidence 47888888888887663 322 25667888888888899999999999999886211 111111111111211
Q ss_pred CChHHHHHHHHHHHHc-CC---CCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 415 RNMERAEALVRDMEEE-GI---DAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 415 g~~~~A~~~~~~~~~~-~~---~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
...+++.++-....++ .. ......+...++-- ...+..+++...+.+... ..-.++...-...+
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEE 273 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHH
Confidence 2233333333222221 00 00000011111000 001111111111111110 11111222222233
Q ss_pred HHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004006 490 ALEVSKVMKSSG-------IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (779)
Q Consensus 490 A~~~~~~m~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 562 (779)
....|+.-.+.- ...+..+|..-+..-.+.|+++.+.-+|++..-- +..-...|-..+.-....|+.+-|..
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHH
Confidence 333333333321 1234568888888888999999999999887531 12233455555665566688888888
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHH
Q 004006 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVH-TFNALILGLVEKRQMEKAI---EILDEMT 638 (779)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~---~~~~~m~ 638 (779)
++....+...+-...+-..-.......|+++.|..+++.+...- |+.. .-..-+....+.|..+.+. .++....
T Consensus 353 ~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~ 430 (577)
T KOG1258|consen 353 VLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY 430 (577)
T ss_pred HHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc
Confidence 88776665444222222222223445689999999999998753 3322 2222344566777777776 3333322
Q ss_pred HCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 004006 639 LAGISPNEHTYTTIMH-----GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695 (779)
Q Consensus 639 ~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 695 (779)
.. .-+..+...+.- .+.-.++.+.|..++.++.+. ++.+...|..++..+...+
T Consensus 431 ~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 431 EG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 21 111111111111 233457889999999999887 4677888888888777665
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.015 Score=50.92 Aligned_cols=132 Identities=17% Similarity=0.095 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCHhHHHHH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MSLVTYSII 372 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 372 (779)
|+......|.+++.+.|++.+|...|++...--+..|....-.+.++....+++..|..+++++.+.... .+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4566677788999999999999999998876555567777888888888889999999998888775421 245566777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (779)
.+.|...|++.+|+..|+.+...-..+....++ ...+.++|+.+++..-+.++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHHH
Confidence 888888888888888888887753333333333 34455667666655444333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.12 Score=51.71 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (779)
+.+.-|.-+...|+...|.++-.+.. .|+...|...+.+|+..+++++...+... . -.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34444556667777777776655553 57777888888888888888776665332 1 13456777788888
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888888887777621 244566777888888877765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.026 Score=60.99 Aligned_cols=141 Identities=13% Similarity=0.220 Sum_probs=69.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
+.+.+.|++++|...|-+-+.. ++| ..+|.-|....++.+-...++.+.+.|+. +..--+.|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3444566666666665554432 111 22344444555555555566666666654 4444556666666666666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
+-.++.+... .|.. ..-....+..+.+.+-.++|..+-.+... ... .+...+...+++++|++.+..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 6555554443 1110 11133444555555555555544433322 111 1222334556666666665544
|
|
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00037 Score=67.59 Aligned_cols=79 Identities=16% Similarity=0.344 Sum_probs=70.1
Q ss_pred cceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++.|.|.||.. .+|.+-|..+|+-||.|.+|+|... + +--|.|.+.+...|+-|++.| +|..+.|++|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-k-----kd~ALIQmsd~~qAqLA~~hL--~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-K-----KDNALIQMSDGQQAQLAMEHL--EGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-C-----CcceeeeecchhHHHHHHHHh--hcceecCceEEEe
Confidence 46899999965 6899999999999999999999976 2 357999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++...+.
T Consensus 369 ~SKH~~vq 376 (492)
T KOG1190|consen 369 LSKHTNVQ 376 (492)
T ss_pred eccCcccc
Confidence 98876543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.12 Score=50.97 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR-GDVWEAADLMQQMKQ 744 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 744 (779)
+......+..+-...|++..|..--+..... .|....|..|.+.-.-. ||-.++..++-+.++
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3334444444444555555444444433332 34444444444443332 555555555554443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00016 Score=43.96 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 334 YTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
||.+|++|.+.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=43.83 Aligned_cols=29 Identities=34% Similarity=0.724 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 718 VYNILIDGWARRGDVWEAADLMQQMKQEG 746 (779)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (779)
+|+.|+++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.015 Score=54.54 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHH
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRDGLKP--DVVLYNNIIRAFCGMGNMDRA 560 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~g~~~~A 560 (779)
+...|.+.|.+..|..-++.+++.-... .......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 4566777777777777777777652211 123445566677777766643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0028 Score=50.49 Aligned_cols=77 Identities=13% Similarity=0.395 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGC-IPTVHTFNALILGLVEKRQ--------MEKAIEILDEMTLAGISPNEHTYTT 651 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~--------~~~A~~~~~~m~~~~~~~~~~~~~~ 651 (779)
..|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- +-+.+.+|++|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566777777788888877777 6778888877777665431 2345566667776667777777777
Q ss_pred HHHHHH
Q 004006 652 IMHGYA 657 (779)
Q Consensus 652 li~~~~ 657 (779)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 766554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.067 Score=58.01 Aligned_cols=174 Identities=9% Similarity=0.041 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHV----YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...++.+.+...+.-|+.+...- +. +... .......+.+.|++++|...|-+-+.. ++| ..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34566666667777776654432 21 2222 223334455667888887776555432 222 234455
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .| +.-| ....+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHH
Confidence 55666666666777777777665 56666677777777777777666555443 22 1111 2334455555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
|..+-.+... +.... --.+-..|++++|++++..+
T Consensus 482 a~~LA~k~~~-----he~vl---~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVL---DILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHH---HHHHHHhcCHHHHHHHHhcC
Confidence 5544433321 12222 22334557777777776554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.15 Score=54.68 Aligned_cols=110 Identities=18% Similarity=0.277 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (779)
+.+--+.-+...|+-.+|.++-.+.. .||...|-.-+.+++..+++++-+++-+..+ ...-|.-++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44444555666677777766665554 4677777777777777777766555544332 1234555667777
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 777777777777665321 1 355667777777777665433
|
|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.42 E-value=8.6e-05 Score=67.29 Aligned_cols=70 Identities=24% Similarity=0.387 Sum_probs=62.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++++|-+++.++...+|...|.++|.+....+ . ++++||+|.+.+++.+|+..+ +|..+.|+.|++.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~-------~~~~~v~Fs~~~da~ra~~~l--~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--R-------RNFAFVEFSEQEDAKRALEKL--DGKKLNGRRISVE 166 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--h-------ccccceeehhhhhhhhcchhc--cchhhcCceeeec
Confidence 3469999999999999999999999999854433 2 689999999999999999999 9999999999994
Q ss_pred e
Q 004006 230 L 230 (779)
Q Consensus 230 ~ 230 (779)
.
T Consensus 167 ~ 167 (216)
T KOG0106|consen 167 K 167 (216)
T ss_pred c
Confidence 4
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0094 Score=57.03 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHH
Q 004006 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVY 719 (779)
Q Consensus 643 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~ 719 (779)
+-|...|..|..+|...|+++.|...|....+.. ..+...+..+..++....+ -.++..+|+++...+ +-|+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 5567788888888888888888888888887764 4566677777776654432 457888888888776 6677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 720 NILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759 (779)
Q Consensus 720 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 759 (779)
..|...++..|++++|...++.|++. .|....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 77888888888888888888888874 333334444444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.015 Score=62.59 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 679 LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (779)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (779)
.+...|..+.-.+...|++++|...++++.+.+ |+...|..++..+...|+.++|.+.+++..+ +.|...+|
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 345566666666666777777777777777765 5667777777777777777777777777766 34443343
|
|
| >KOG4210 consensus Nuclear localization sequence binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.40 E-value=7.9e-05 Score=72.43 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=73.1
Q ss_pred eEE-eccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIF-VGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~-v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++| |+++++.+++++|+..|..+|.|..+++..+ ..+|.++|||||.|........++.. +...+.|+++.+...
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~-~~s~~~kg~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD-EESGDSKGFAYVDFSAGNSKKLALND---QTRSIGGRPLRLEED 261 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCC-CCccchhhhhhhhhhhchhHHHHhhc---ccCcccCcccccccC
Confidence 555 9999999999999999999999999999988 89999999999999999888887743 578889999999998
Q ss_pred CCcchhhH
Q 004006 232 DGRRLKNK 239 (779)
Q Consensus 232 ~~~~~~~~ 239 (779)
.++.....
T Consensus 262 ~~~~~~~~ 269 (285)
T KOG4210|consen 262 EPRPKSDG 269 (285)
T ss_pred CCCccccc
Confidence 88765543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0093 Score=57.06 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---CChHHHHHHHHHHHHcCCCCCHhHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG---RDMEEALSCVRKMKEEGIEMSLVTYSI 371 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (779)
|...|..|..+|...|++..|..-|.+..+.. ..+...+..+..++... .+..++.++|++++..+.. |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 56667777777777777777777777776653 22444444444443322 2345566666666665422 5555666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
|...+...|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 666666666666666666666654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.01 Score=49.39 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=63.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHH
Q 004006 301 LMVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGF 376 (779)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~ 376 (779)
.+..++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|+.++++....... .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 355667778888888888888888776533 234555667777888888888888887765211 1333344445566
Q ss_pred HccCCHHHHHHHHHHHHH
Q 004006 377 AKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~ 394 (779)
...|+.++|++++-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777888888887766554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.22 Score=50.00 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=85.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (779)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 655 (779)
..+.+..+.-+...|+...|.++-.+.. .|+...|...+.+|+..++|++-..+... +-...-|...+.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 4456666777888899888888766653 36888999999999999999887765432 1234678888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 656 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
|.+.|+..+|..++.++ .+..-+..|.++|++.+|.+..-+.
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999888872 2255678899999999988765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00085 Score=50.20 Aligned_cols=63 Identities=22% Similarity=0.162 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-NMERAEALVRDMEE 429 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 429 (779)
..+|..++..+...|++++|+..|+++++.+.. +..+|..+..+|.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344455555555555555555555555554333 4445555555555555 35555555544443
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.083 Score=46.41 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHH
Q 004006 364 MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMM 442 (779)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l 442 (779)
|.+.-...|...+.+.|+..+|...|++...--..-|......+.++....+++.+|...++++.+.+- .........+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444445555556666666666666666555433333555555566666666666666666666655431 0112333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
.+.|...|.+.+|...|+..... -|+...-......+.+.|+.+++..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 55666666666666666666554 2333333333444555555554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.03 Score=52.55 Aligned_cols=64 Identities=20% Similarity=0.143 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
..+......+.+.|++.+|+..|+.+...-.. -...+.-.++.++.+.|++++|...++++++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445666777888888888888888875221 12235666777788888888888888888775
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.014 Score=48.71 Aligned_cols=91 Identities=21% Similarity=0.181 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR---NTFVYNILIDGW 726 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~ 726 (779)
+..++...|+.++|+.+|++.+..|+... ...+..+...|...|++++|..+|++..... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34455666777777777777776665433 3345556666667777777777777666532 21 223333444566
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004006 727 ARRGDVWEAADLMQQMK 743 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~ 743 (779)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66777777777665544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0071 Score=65.06 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHCC-CCCCHh
Q 004006 262 EREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARR--------GDMHRARQTFENMRARG-IEPTLH 332 (779)
Q Consensus 262 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~-~~~~~~ 332 (779)
..+.|+.+|.++++.+|+ ....|..+..+|... +++..+.+..++..... ...+..
T Consensus 357 ~~~~A~~lle~Ai~ldP~---------------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~ 421 (517)
T PRK10153 357 SLNKASDLLEEILKSEPD---------------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR 421 (517)
T ss_pred HHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence 346788888888888886 333444433333221 11233334444433321 122345
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (779)
.|..+.-.+...|++++|...+++.++.+ ++...|..++..|...|+.++|.+.|+++...++
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56555555555677777777777777754 4666777777777777777777777777766543
|
|
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.004 Score=64.91 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=67.8
Q ss_pred ccccc-eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 148 FRQEG-KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 148 ~~~~~-~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.+.++ .|-+.|.|++++-+|+.++|.-|-.+-.-.+++. ...|+..|-+-|.|++.+.|.+|...+ ++..|..|.|
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~-nd~G~pTGe~mvAfes~~eAr~A~~dl--~~~~i~nr~V 939 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR-NDDGVPTGECMVAFESQEEARRASMDL--DGQKIRNRVV 939 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEee-cCCCCcccceeEeecCHHHHHhhhhcc--ccCcccceeE
Confidence 34555 7888999999999999999999977654333333 567999999999999999999999999 9999999999
Q ss_pred EEEe
Q 004006 227 TVKL 230 (779)
Q Consensus 227 ~v~~ 230 (779)
++.+
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0055 Score=55.51 Aligned_cols=86 Identities=22% Similarity=0.412 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----------------CChHHHHHH
Q 004006 295 SRREFGLMVNYYAR-----RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG----------------RDMEEALSC 353 (779)
Q Consensus 295 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~A~~~ 353 (779)
+..+|..++..|.+ .|..+--...+..|.+.|+..|..+|+.||+++=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55566666666653 366677777888999999999999999999987542 223456677
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHccC
Q 004006 354 VRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 354 ~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (779)
+++|...|+-||.+++..|++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 777777777777777777777765544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=47.69 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
+...+...|++++|...|+++++.. +.+...+..++.++...|++++|..+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777777777776665 44566667777777777777777777777765
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0093 Score=54.10 Aligned_cols=87 Identities=16% Similarity=0.309 Sum_probs=50.7
Q ss_pred CHhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 004006 470 SIISYGCLINLYTK-----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL----------------KDWANVFAV 528 (779)
Q Consensus 470 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~ 528 (779)
+..+|..+++.|.+ .|..+-....++.|.+.|+..|..+|+.||+.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55555555555543 355666666666666666666666666666665432 233445566
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 004006 529 FEDVMRDGLKPDVVLYNNIIRAFCGMGN 556 (779)
Q Consensus 529 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 556 (779)
+++|...|+-||..++..|++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 6666666666666666666666555443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.002 Score=48.19 Aligned_cols=62 Identities=27% Similarity=0.270 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEAKE 394 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 394 (779)
.+|..+...+...|++++|+..|++.++.+.. +...|..+..+|.+.| ++++|++.|+++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34444445555555555555555555444311 3444555555555555 45555555555443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=47.96 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=19.8
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004006 341 YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAK 393 (779)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (779)
+.+.|++++|..+|+++++.. +-+...+..+..++...|++++|+.+|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444332 1133333444444444444444444444333
|
|
| >KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00054 Score=62.30 Aligned_cols=74 Identities=19% Similarity=0.382 Sum_probs=62.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCC--------CCCcc----eEEEEeCCHHHHHHHHHHhhh
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF--------EKNVG----FGFVIYDGPAAEKSAMKAVEF 216 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--------~~~~g----~~fv~f~~~~~a~~a~~~~~~ 216 (779)
+..+.||++++|+.+...-|+++|+.||.|-.|.+... ..+ |++++ =|.|+|.+...|.+....|
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE-~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L-- 148 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE-DDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL-- 148 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecch-hhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh--
Confidence 46789999999999999999999999999999988775 444 44433 3679999999999999988
Q ss_pred CCceeeceE
Q 004006 217 DGVEFHGRV 225 (779)
Q Consensus 217 ~g~~~~~~~ 225 (779)
||..|+|+.
T Consensus 149 nn~~Iggkk 157 (278)
T KOG3152|consen 149 NNTPIGGKK 157 (278)
T ss_pred CCCccCCCC
Confidence 999999864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.044 Score=57.33 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCChHHHHHHH---------HHHHHCCCCCCHhhHHHHHHHHHccCChH--HHHHHHHHHHHcCCCCCHh
Q 004006 299 FGLMVNYYARRGDMHRARQTF---------ENMRARGIEPTLHVYTNLIHAYAVGRDME--EALSCVRKMKEEGIEMSLV 367 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~ 367 (779)
+.+-+-.|...|.+++|.++- +.+... ..+..-++..=++|.+..+.. +...-+++|.++|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 344456677888888886532 111111 112233445555665554433 3344456666666556654
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEA 392 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (779)
. +...++-.|+|.+|.++|.+-
T Consensus 637 L---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 637 L---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred H---HHHHHHhhhhHHHHHHHHHHc
Confidence 3 445566778888888877654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=48.68 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=20.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
.|++++|+++|+++...... +...+..++.+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444443211 344444444444444444444444444443
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.12 Score=47.69 Aligned_cols=205 Identities=10% Similarity=0.091 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.|..-..+|-...++++|...+.+..+- .+.+...| ... ..++.|..+.++|.+. .--+..|.-...+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444567787888899999988888753 22222222 222 3456677777777663 223455677778889
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCCH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE---G--IDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~ 452 (779)
.+|..+.|-..++++-+. .+..+.++|+++|.+.... + ...-...+....+.+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 999988888888776542 2334455566665554431 0 001122233444555566666
Q ss_pred HHHHHHHHHHHHCCC----CCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 004006 453 EKCLIVFERLKECGF----SPS-IISYGCLINLYTKIGKVSKALEVSKVMKSSG---IKHNMKTYSMLINGFLKLKDWAN 524 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~----~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~ 524 (779)
++|-..|.+...... -++ -..|...|-.|.-..++..|...++.-.+.+ -.-+..+...||.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 655554443321100 001 1123344445555566667776666543322 122344555555555 3455555
Q ss_pred HHHHH
Q 004006 525 VFAVF 529 (779)
Q Consensus 525 a~~~~ 529 (779)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 54443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.096 Score=52.91 Aligned_cols=180 Identities=12% Similarity=0.022 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCHhH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARG---IEPTLHVYTNLIHAYAV---GRDMEEALSCVRKMKEEGIEMSLVT 368 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~ 368 (779)
+..+...|+-.|-...+|+.-+++.+.+...- +.....+-....-++-+ .|+.++|++++..++...-..+..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444455556778888888888888887651 11122222233334445 6888888888888655555567788
Q ss_pred HHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 004006 369 YSIIVGGFAKM---------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIY 439 (779)
Q Consensus 369 ~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 439 (779)
|..+++.|... ...++|+.+|.+.-+.. ++...--+++..+.-.|...+...-++++. ..+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~--------~~l 289 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIG--------VKL 289 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHH--------HHH
Confidence 88888776531 12455555555554432 222222222222222222111110000000 000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
+ ....+.|.. +-..|...+.+++.++.-.|++++|.+.+++|...
T Consensus 290 ~---~llg~kg~~-------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 290 S---SLLGRKGSL-------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred H---HHHHhhccc-------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 0 001111110 11235566677888888888888888888888865
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.19 Score=50.91 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 004006 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS---------LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKS 694 (779)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (779)
.|+.++|+.++..+......++..+|..+...|-. ....++|+..|.+.-+.. ++.+.--.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHc
Confidence 45555555555554433334445555554444421 112566666666655442 3443333333334444
Q ss_pred CC-hH---HHHHHH---H-HHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004006 695 GR-MQ---SALAVT---K-EMSAQK---IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (779)
Q Consensus 695 g~-~~---~A~~~~---~-~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (779)
|. ++ +..++- . .+.+.| -..+-+.+.+++.+..-.|++++|.+..++|.+. .|...
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 43 11 222222 1 111222 1345566688888899999999999999999874 44433
|
|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0013 Score=65.89 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=62.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeE-EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..|-+.+||+.+|++||.++|+.--.+.. +.++.| ..|++.|=|||.|++.+.++.|+.. |...|+.|.|.|-.
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae~Al~r---hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD--QRGRPTGEAFVQFESQESAEIALGR---HRENIGHRYIEVFR 178 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeecc--CCCCcccceEEEecCHHHHHHHHHH---HHHhhccceEEeeh
Confidence 47888999999999999999997544433 555665 4478999999999999999999976 78889999999865
Q ss_pred c
Q 004006 231 D 231 (779)
Q Consensus 231 ~ 231 (779)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 5
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0024 Score=47.50 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR 325 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (779)
+.|...|.+++..+|. +...+..++.+|.+.|++++|..+++++...
T Consensus 8 ~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 8 DEAIELLEKALQRNPD---------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHTTT---------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555554 4444445555555555555555555555554
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.018 Score=55.99 Aligned_cols=89 Identities=8% Similarity=0.005 Sum_probs=39.5
Q ss_pred HccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCh
Q 004006 342 AVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNM 417 (779)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 417 (779)
.+.|++++|+..|+.+++.-..- ....+..++.+|...|++++|+..|+.+.+..+. ....++..++.+|...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 33444555555555544432110 0134444455555555555555555555443211 1233444444445555555
Q ss_pred HHHHHHHHHHHHc
Q 004006 418 ERAEALVRDMEEE 430 (779)
Q Consensus 418 ~~A~~~~~~~~~~ 430 (779)
++|..+|+++++.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.017 Score=56.06 Aligned_cols=98 Identities=8% Similarity=-0.022 Sum_probs=59.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLN--AIIYGNIIYAQCQTRNMERAEALVRDMEEEG--IDAPIDIYHMMM 443 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~ 443 (779)
.|...+..+.+.|++++|+..|+.+.+..+... ..++..++.+|...|++++|...|+.+.+.- .......+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777776643311 2466667777777777777777777776542 112234455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004006 444 DGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
.++...|+.++|..+|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5666666666666666666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.84 Score=49.39 Aligned_cols=87 Identities=8% Similarity=-0.035 Sum_probs=40.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN--MERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
+++-+...+.+..|+++-..+...-.. ...+|......+.+..+ -+++++..++=..... ..-..|..+.......
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 444555666667776666555433222 13445555555554422 1222222222111111 2234455555556666
Q ss_pred CCHHHHHHHHH
Q 004006 450 GNEEKCLIVFE 460 (779)
Q Consensus 450 g~~~~a~~~~~ 460 (779)
|+.+-|..+++
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 66666666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.061 Score=46.87 Aligned_cols=85 Identities=12% Similarity=0.000 Sum_probs=42.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (779)
..|++++|+.+|..+...+.. |...|..|..+|-..+++++|+++|......+ ..|...+..+..+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 455555555555555444333 44445555555555555555555555444443 2233334444555555555555555
Q ss_pred HHHHHHH
Q 004006 458 VFERLKE 464 (779)
Q Consensus 458 ~~~~~~~ 464 (779)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.2 Score=45.27 Aligned_cols=194 Identities=13% Similarity=0.178 Sum_probs=113.0
Q ss_pred hhHHHHHhhhcccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004006 237 KNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRAR 316 (779)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (779)
|....+.+.-+|..-|-. .-|+-=|.+.+.++|. -+..||.|.-.+...|+++.|.
T Consensus 64 RA~l~fERGvlYDSlGL~---------~LAR~DftQaLai~P~---------------m~~vfNyLG~Yl~~a~~fdaa~ 119 (297)
T COG4785 64 RAQLLFERGVLYDSLGLR---------ALARNDFSQALAIRPD---------------MPEVFNYLGIYLTQAGNFDAAY 119 (297)
T ss_pred HHHHHHHhcchhhhhhHH---------HHHhhhhhhhhhcCCC---------------cHHHHHHHHHHHHhcccchHHH
Confidence 344555444446666655 7788889999999886 6778899999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccCCHHHHHHHH-HHHHH
Q 004006 317 QTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADHWF-EEAKE 394 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~ 394 (779)
+.|+...+.+..-+-...|.-|..| -.|++.-|.+-|-..-..+.. |=-..|..+.. ..-+..+|..-+ ++...
T Consensus 120 eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 120 EAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred HHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh
Confidence 9999999986554444556666655 458999998877777654322 22223333332 334566665433 33333
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 395 RHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID------APIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
. +..-|..-|..|.- |++. .+.+++++....-. .-..+|.-+.+.|...|+.++|..+|+....
T Consensus 196 ~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 196 S----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred c----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2 44444433333221 1111 11233333321100 0123455555666666666666666665544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.086 Score=55.28 Aligned_cols=90 Identities=16% Similarity=0.265 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-------
Q 004006 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF------- 717 (779)
Q Consensus 645 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------- 717 (779)
+..+...+...+.+...+.-|-++|++|-+. ..+++.....++|.+|..+.++.-+. .+|+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555556666677888888877543 35677788888899888888776543 23322
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 718 ----VYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 718 ----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
-|.---.+|-+.|+-+||.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1223345678889999999999988654
|
|
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.049 Score=52.67 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=68.6
Q ss_pred ccceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+++.+.|-+|... ++-+.|..+|-.||.|+.|++++. + .|-|.|+..+....++|+.-| |+..+-|.+|.|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k-----~gtamVemgd~~aver~v~hL--nn~~lfG~kl~v 357 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-K-----PGTAMVEMGDAYAVERAVTHL--NNIPLFGGKLNV 357 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-c-----cceeEEEcCcHHHHHHHHHHh--ccCccccceEEE
Confidence 4568999999775 455788999999999999999986 3 589999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
++++-..
T Consensus 358 ~~SkQ~~ 364 (494)
T KOG1456|consen 358 CVSKQNF 364 (494)
T ss_pred eeccccc
Confidence 9986554
|
|
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0036 Score=63.32 Aligned_cols=67 Identities=28% Similarity=0.392 Sum_probs=50.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCC--CCcc---eEEEEeCCHHHHHHHHHHhhh
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVG---FGFVIYDGPAAEKSAMKAVEF 216 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~g---~~fv~f~~~~~a~~a~~~~~~ 216 (779)
+=.++||||+||++++|+.|...|..||.+. |.........+ -.+| |+|..|+++.++++-+.++..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 3446999999999999999999999999975 22221001111 2267 999999999999999988843
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.68 Score=47.15 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
++.........+...|+|+.+...+...... +.....+...+++...+.|++++|..+-+-|+...++ +.+.......
T Consensus 322 ~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~ 399 (831)
T PRK15180 322 DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAG 399 (831)
T ss_pred CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhheeeecc
Confidence 3444444556777889999999988776543 3445677888888899999999999999999887666 6666666655
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC
Q 004006 375 GFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
.--..|.++++.-.+.++.....+
T Consensus 400 sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 400 SADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred cHHHHhHHHHHHHHHHHHhccCCh
Confidence 666778899999888888776544
|
|
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00054 Score=66.48 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=60.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+..+.++|||++++|+++..++.+||.|..+.+.+. +..+|++|.+.++|..-+.-...---.+.|++|.|++
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceeeeeeecc-------chhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 348999999999999999999999999999988876 5699999999887776332221122336788999888
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
+..+
T Consensus 101 sn~~ 104 (492)
T KOG1190|consen 101 SNHS 104 (492)
T ss_pred hhHH
Confidence 5433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.017 Score=50.20 Aligned_cols=91 Identities=12% Similarity=0.007 Sum_probs=50.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
..-.+.+.|++++|..+|.-+...+.. +..-|..|..++-..+++++|+.+|......+. -|...+..+..+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 344444666666666666666555432 344445555555555666666666655544332 244445555666666666
Q ss_pred HHHHHHHHHHHHH
Q 004006 382 AEAADHWFEEAKE 394 (779)
Q Consensus 382 ~~~A~~~~~~~~~ 394 (779)
.+.|+..|+.+.+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665554
|
|
| >PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT [] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0059 Score=48.45 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=49.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEE-EecCCC-----CCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVI-LIKGYN-----NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~-~~~~~~-----~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
..|.|-+.|.. ....+.+.|++||.|.+.. +.++.. ......+.-.|.|+++.+|.+|+.. ||..++|..
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~---NG~i~~g~~ 82 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK---NGTIFSGSL 82 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT---TTEEETTCE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh---CCeEEcCcE
Confidence 46778888887 5567788999999998764 111100 0011256899999999999999865 999998865
Q ss_pred E-EEEec
Q 004006 226 L-TVKLD 231 (779)
Q Consensus 226 ~-~v~~~ 231 (779)
| -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 5 45554
|
This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A. |
| >KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0049 Score=65.46 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 004006 265 WHRREFRKAV 274 (779)
Q Consensus 265 ~a~~~f~~~~ 274 (779)
++.++|+..+
T Consensus 441 e~~R~~nlai 450 (830)
T KOG1923|consen 441 EQRRLFNLAI 450 (830)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >KOG1996 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.004 Score=57.70 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 166 HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 166 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+++.+...+||.|..|.|..+....-.-.---||+|+..++|.+|+..| ||..|+||.++.+|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdl--nGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDL--NGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhc--CCceecceeeeheecc
Confidence 4667888999999999888772222222345799999999999999999 9999999999988753
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.53 Score=44.38 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=34.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRDGLK--PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 570 (779)
+.+.|.+.|.+..|..-++.|++.-.. -....+-.+..+|...|-.++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 445667777777777777777765111 11233444556667777777766655554443
|
|
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0035 Score=63.42 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=60.1
Q ss_pred hccccceEEeccCCCcCChHHHHHHHh-ccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 004006 147 EFRQEGKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213 (779)
Q Consensus 147 ~~~~~~~~~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 213 (779)
..++.++||||+||.-++-++|-.+|. -||.|..+-|=.| ..-+-.+|=|=|+|.+..+..+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD-~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD-PKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC-cccCCCCCcceeeecccHHHHHHHhh
Confidence 346778999999999999999999998 5999999999988 66788899999999999999999976
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.046 Score=52.19 Aligned_cols=10 Identities=0% Similarity=0.033 Sum_probs=3.9
Q ss_pred ChHHHHHHHh
Q 004006 164 KKHLVMEFFR 173 (779)
Q Consensus 164 ~~~~l~~~f~ 173 (779)
+|.++++++.
T Consensus 358 SeAEFEdiM~ 367 (498)
T KOG4849|consen 358 SEAEFEDIMT 367 (498)
T ss_pred hHHHHHHHHh
Confidence 3344444333
|
|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0063 Score=58.14 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=65.9
Q ss_pred hhccccceEEeccCCC----cCC-------hHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 146 TEFRQEGKIFVGNLPN----WIK-------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 146 ~~~~~~~~~~v~~l~~----~~~-------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
...+..++|.+.|+-. ..+ .++|++-.++||.|..|.|.-. .+.|.+-|.|.+.+.|..+|+.|
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-----hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-----HPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-----CCCceeEEEeCChHHHHHHHHHh
Confidence 3445667899998832 223 2466677899999999977643 33799999999999999999999
Q ss_pred hhCCceeeceEEEEEecCCcc
Q 004006 215 EFDGVEFHGRVLTVKLDDGRR 235 (779)
Q Consensus 215 ~~~g~~~~~~~~~v~~~~~~~ 235 (779)
+|..|+||.|..++-.++.
T Consensus 335 --~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 335 --DGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred --cCeeecceEEEEEEeCCcc
Confidence 9999999999998766554
|
|
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0046 Score=63.87 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=52.0
Q ss_pred HHHHHHhccCCeeEEEEecCCC--CCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 167 LVMEFFRQFGPIKNVILIKGYN--NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 167 ~l~~~f~~~g~i~~~~~~~~~~--~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+++.-+++||.|..|.|.++.. ...-.-|..||+|.+.+++++|.++| +|..+.||.|...|-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L--~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEEL--TGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHc--cCceeCCcEEEEEec
Confidence 5566788999999999988611 12333678899999999999999999 999999999998874
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.11 Score=53.20 Aligned_cols=117 Identities=7% Similarity=-0.043 Sum_probs=73.9
Q ss_pred hHHHHHHHHHH---hcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCChHHHHHHHHHHHHCCCCCCH
Q 004006 264 EWHRREFRKAV---ETQPENWQAVVSAFERIKKPSRREFGLMVNYYA---------RRGDMHRARQTFENMRARGIEPTL 331 (779)
Q Consensus 264 ~~a~~~f~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~ 331 (779)
+.|..+|.+++ ..+|. ....|..+..++. ......+|+++.++..+.+. .|.
T Consensus 275 ~~Al~lf~ra~~~~~ldp~---------------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da 338 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTL---------------KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDG 338 (458)
T ss_pred HHHHHHHHHHhhcccCCcc---------------cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCH
Confidence 66888888888 77765 2222332222221 23345667777777777653 366
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (779)
.+...+..++...++++.|..+|++....+.. ...+|......++-.|+.++|.+.+++..+..+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 66666666666677777777777777775422 455666666666677777777777777666543
|
|
| >KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0026 Score=66.35 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=58.9
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
++||||+...+..+-+..+...||.|..++.+. |||.+|.+.....+|+..+ +-..++|+.+.+..
T Consensus 42 ~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----------fgf~~f~~~~~~~ra~r~~--t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 42 TVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----------FGFCEFLKHIGDLRASRLL--TELNIDDQKLIENV 107 (668)
T ss_pred eeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----------hcccchhhHHHHHHHHHHh--cccCCCcchhhccc
Confidence 899999999999999999999999998876542 9999999999999999988 88888888887654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.067 Score=57.21 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTL------HVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVT 368 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 368 (779)
+..++...+=.|+-+.+++++.+..+.+--... ..|+.++..+.. ..+.+.|.++++.+.++ . |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-y-P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-Y-PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-C-CCcHH
Confidence 334555555566666666666665543211111 123333322222 23455566666666554 2 23333
Q ss_pred H-HHHHHHHHccCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 369 Y-SIIVGGFAKMGNAEAADHWFEEAKERH---ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 369 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
| ..-.+.+...|++++|++.|+++.... .+.....+.-++.++.-..++++|.+.|..+.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3 333344555566666666666544211 1112333444444455555555555555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.85 Score=45.33 Aligned_cols=126 Identities=20% Similarity=0.214 Sum_probs=80.8
Q ss_pred HHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 298 EFGLMVNYYA--RRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 298 ~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
.|..|-.++. -.|+-..|+++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|.. |.+|...=+
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 3566655555 346777787777776543 23355555555543 2345888888888888876 334433322
Q ss_pred HH----HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 374 GG----FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 374 ~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++ --+.|..+.|+.+-+..-+.-.. -...+...+...|..|+++.|+++++.-...
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 22 23677888888777777665333 5567777788888888888888888766554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.35 Score=45.52 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 441 MMMDGYTIIGNEEKCLIVFERLKECGFSPS---IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
.+.+.|.+.|.+..|..-+++|++. ..-. ...+-.|..+|...|..++|.+.-+-+..+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456777778888888777777775 3222 234455667778888888887776555543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0035 Score=63.75 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=59.9
Q ss_pred ceEEeccCCCcCCh------HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ce
Q 004006 152 GKIFVGNLPNWIKK------HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GR 224 (779)
Q Consensus 152 ~~~~v~~l~~~~~~------~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~ 224 (779)
..++|.|.|---.. .-|.++|+++|.|....+..+ .. |+++||.|++|.+..+|+.|++.+ ||+.|+ .+
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~-e~-ggtkG~lf~E~~~~~~A~~aVK~l--~G~~ldknH 134 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPID-EE-GGTKGYLFVEYASMRDAKKAVKSL--NGKRLDKNH 134 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccC-cc-CCeeeEEEEEecChhhHHHHHHhc--ccceecccc
Confidence 48899998764222 245689999999999988877 44 559999999999999999999999 999995 55
Q ss_pred EEEEEe
Q 004006 225 VLTVKL 230 (779)
Q Consensus 225 ~~~v~~ 230 (779)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 555543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.5 Score=47.74 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=71.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
|+.+.+.+.+++|++.-+..... .+ -...+...|..|.-.|++++|-...-.|... +..-|...+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 67888889999999887765433 33 3457888889999999999999998888764 677787777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (779)
++..... .-+.......+...|..++..+..
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 7665433 223333333455566666666554
|
|
| >PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0056 Score=42.26 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=40.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHH
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 211 (779)
.|-|.|.+.+.. +++...|..||.|.++.+-.+ ..+.+|.|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~-------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES-------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC-------CcEEEEEECCHHHHHhhC
Confidence 566777776655 445558889999999877633 569999999999999884
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.17 Score=52.02 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
..+-..|..+..+.|+.++|++.|.+|.+..... +..+...|+.++...+.+.++..++.+-.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3334456666667777777777777776543322 3346667777777777777777777765443
|
The molecular function of this protein is uncertain. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.015 Score=43.93 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|.+.+++++|.++++.+...+ +.+...|..++..+.+.|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555666666666666665554 44555555566666666666666666666655
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.057 Score=45.55 Aligned_cols=102 Identities=11% Similarity=0.201 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004006 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (779)
Q Consensus 645 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (779)
|..++..+|.++++.|+.+....+++..-. +..+... ..+. .-......|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 455666677777777777666666654432 2111100 0000 0112234577777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 004006 725 GWARRGDVWEAADLMQQMKQE-GVQPDVHTYTSFINACKCSKS 766 (779)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~a~~~~g~ 766 (779)
+|+..|++..|+++++...+. ++..+..+|..|+.-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 888888888888888776653 666677788877777666544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.1 Score=45.31 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (779)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 689 (779)
..+|..+++...+..-++.|..+|-++.+.+ +.++...++.++..++ .|+...|..+|+--+.. +..+..--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4456666666666666677777777777666 4455666666665544 46666777777654443 1223333344555
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 690 ACCKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACK 762 (779)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 762 (779)
.+...++-..|..+|+..+.. +..+ ..+|..+|.-=..-|+...+..+-++|.+ +.|-..+...+.+-|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 666667777777777755432 1222 45677777766777777777777666665 3444444444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.99 Score=44.39 Aligned_cols=200 Identities=15% Similarity=0.095 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH----HHHCC-CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC---CHh
Q 004006 297 REFGLMVNYYARRGDMHRARQTFEN----MRARG-IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-GIEM---SLV 367 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~---~~~ 367 (779)
.++..+..+..+.|.+++++..--- +.+.. -.--...|..+.+++-+.-++.+++.+-..-... |..+ .-.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3567778888888888777653221 11110 0001234555555555555666666555444432 1111 123
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC-CCh---
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG--ID-API--- 436 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~--- 436 (779)
...++..++...+.++++++.|+.+.+.- ......++..|...|.+..++++|.-...+..+.- +. .|.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 44556677777777888888888776532 12233466677777777777777766555444321 11 111
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 437 ---DIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 437 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
.+...|.-++...|+...|.+..++..+. |-.+ -......+.++|...|+.+.|+.-|++
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12223334455555555555555544322 2111 112233445555555665555555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.31 Score=46.71 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=73.6
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004006 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (779)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (779)
...|++.+|..+|+........ +...-..++.+|...|+++.|..+++.+..............-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3455666666666655554322 345555566666666666666666665544321111111122233344444444444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 422 ALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--GFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
++-.++-.. +.|...-..+...|...|+.+.|++.+-.+.+. |.. |...-..|+..+.-.|..+.
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 444444332 335566666667777777777777766655543 332 44445556666555554433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.89 Score=43.66 Aligned_cols=124 Identities=18% Similarity=0.100 Sum_probs=61.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 004006 620 GLVEKRQMEKAIEILDEMTLAGI--SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRM 697 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (779)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.++...........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44555555555555555533111 0122223333333445556666666666655543111344555555566666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 698 QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
+.|...+....... +.....+..+...+...+..+++...+.+..+
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666665542 11233344444444455556666666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.17 Score=52.02 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004006 591 EMKRALEIFDMMRRS-GCIPT-VHTFNALILGLVEK---------RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL 659 (779)
Q Consensus 591 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 659 (779)
..+.|+.+|.+.... ..+|+ ...|..+..++... ....+|.++-++.++.+ ..|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 356777788887721 12333 44444444333321 22345566666666665 55666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 004006 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF---VYNILIDGWARRGDVWEAA 736 (779)
Q Consensus 660 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 736 (779)
++++.|..+|++....+ +....+|......+..+|+.++|.+.+++..+.+ |... +....++.|+.. ..++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcCC-chhhhH
Confidence 77777777777777765 3455566666666667777777777777766543 3222 222223334433 345666
Q ss_pred HHHHH
Q 004006 737 DLMQQ 741 (779)
Q Consensus 737 ~~~~~ 741 (779)
+++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 65544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.14 Score=49.37 Aligned_cols=153 Identities=8% Similarity=-0.014 Sum_probs=93.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHHhcCCH
Q 004006 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH--TY--TTIMHGYASLGDT 662 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~--~~li~~~~~~g~~ 662 (779)
...|++.+|-..++++++.-+ .|...++..-.+|+.+|+.+.-...+++++.. ..+|.. .| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 445666666667777776533 36667776677777788777777777776643 123332 22 2222344567778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 004006 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR----NTFVYNILIDGWARRGDVWEAADL 738 (779)
Q Consensus 663 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 738 (779)
++|.+.-++..+.+ +.|.-...++...+...|+++++.++..+-... ... -...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888887777776 556667777777777778888887777665431 010 011222223334455677888888
Q ss_pred HHHHH
Q 004006 739 MQQMK 743 (779)
Q Consensus 739 ~~~m~ 743 (779)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 77644
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.02 Score=43.29 Aligned_cols=55 Identities=24% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
.|.+.+++++|+++++.++..+.. +...|.....+|.+.|++++|.+.|+++.+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344445555555555555444322 4444444445555555555555555554443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.32 Score=40.25 Aligned_cols=140 Identities=16% Similarity=0.281 Sum_probs=80.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 666 (779)
.-.|..++..++..+.... -+..-+|.+|.-....-+-+-..+.++..-. .-|. ..+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHH
Confidence 3457777777877777664 2455566666555544444444444444322 1111 1234444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (779)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (779)
..+..+ + .+.......+..+...|+-+.-.+++..+.+.+ .++....-.+..+|.+.|+..++.+++.++.++|
T Consensus 77 ~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 444332 1 133345666778888888888888888886533 6788888889999999999999999999998888
Q ss_pred CC
Q 004006 747 VQ 748 (779)
Q Consensus 747 ~~ 748 (779)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.092 Score=53.79 Aligned_cols=64 Identities=16% Similarity=-0.001 Sum_probs=42.6
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-H---hHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-L---VTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+...|+.+..+|.+.|++++|+..|++.++.+ |+ . .+|..+..+|.+.|++++|+..|+++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567777777777777777777777766643 33 2 34677777777777777777777776654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.4 Score=50.48 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 004006 472 ISYGCLINLYTKIG--KVSKALEVSKVMKS 499 (779)
Q Consensus 472 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 499 (779)
.-...+|..|.+.+ .++.|+........
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34456677777777 67777776666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.18 Score=44.35 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 405 GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
..++..+...|++++|+++++.+...+ +.+...|..+|.+|...|+...|+++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444555555555555555555553 445555555555555555555555555554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0051 Score=59.35 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=65.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCC-ee--EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGP-IK--NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~-i~--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+|-..+||+..+-++|..+|..|-. |. .|+++.+ ..|+..|-|||.|.+.++|.+|...+ +.+...+|.|.|
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N--~qGrPSGeAFIqm~nae~a~aaaqk~--hk~~mk~RYiEv 356 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN--GQGRPSGEAFIQMRNAERARAAAQKC--HKKLMKSRYIEV 356 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc--CCCCcChhhhhhhhhhHHHHHHHHHH--HHhhcccceEEE
Confidence 48999999999999999999998864 43 4888874 67999999999999999999999998 777778999887
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
--+
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.069 Score=53.34 Aligned_cols=140 Identities=13% Similarity=0.035 Sum_probs=90.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
-.+.|.+.|+|..|...|++++.. +. |.+.-+.++...+. . .-..+++.|..+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE-A-------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhhhh
Confidence 468899999999999999987753 00 00111112221111 1 123456777788888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHH
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK-CLIVFE 460 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~ 460 (779)
+.+|++.-++.++.+.. |+...+.-..+|...|+++.|+..|+++.+.. +.|-.+-+.|+.+..+...... ..++|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887654 78888888888888888888888888888763 3344555555555444444333 345555
Q ss_pred HHHH
Q 004006 461 RLKE 464 (779)
Q Consensus 461 ~~~~ 464 (779)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 5543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.065 Score=53.48 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.+++.+..+|.+.+++.+|++..++.++.+ +.|.-...--..+|...|+++.|+..|.++++..+. |..+-..|+.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 456677777888888888888888888765 347777777788888888888888888888877544 555555555554
Q ss_pred HhcCChHH-HHHHHHHHHHc
Q 004006 412 CQTRNMER-AEALVRDMEEE 430 (779)
Q Consensus 412 ~~~g~~~~-A~~~~~~~~~~ 430 (779)
.+.....+ ..++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44444433 35666666653
|
|
| >PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.018 Score=48.56 Aligned_cols=56 Identities=21% Similarity=0.437 Sum_probs=44.0
Q ss_pred HHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCCc
Q 004006 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (779)
Q Consensus 167 ~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~~ 234 (779)
+|.+.|+.||.+.-+|++.+ .-.|+|.+-.+|.+|+.. +|..++|+.|+|.+..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~---------~mwVTF~dg~sALaals~---dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD---------TMWVTFRDGQSALAALSL---DGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT---------CEEEEESSCHHHHHHHHG---CCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC---------eEEEEECccHHHHHHHcc---CCcEECCEEEEEEeCCcc
Confidence 67788999999888888754 678999999888888753 999999999999986544
|
; PDB: 1UFW_A 2DNR_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0091 Score=45.87 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 682 FTYEALLKACCKSGRMQSALAVTKEMSAQ--KIP---RN-TFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.+++.+..+|...|++++|+.++++..+. ... ++ ..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566666666666666666666665532 001 11 33566667777777777777777766543
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.54 Score=43.52 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 439 YHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
|+.-..+|..+|..+.|-..+++.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHH
Confidence 333444556666655555555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.034 Score=49.09 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTY 754 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~ 754 (779)
+...++..+...|++++|..+++.+...+ +-+...|..+|.+|...|+..+|+++|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45667777778888888888888888766 66777888888888888888888888887653 4777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.016 Score=55.88 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=64.2
Q ss_pred ceEEec--cCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--eceEEE
Q 004006 152 GKIFVG--NLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLT 227 (779)
Q Consensus 152 ~~~~v~--~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~--~~~~~~ 227 (779)
..|.+. |--+.+|-+-|..+....|.|..|.|.+. + --.|.|||++.+.|++|.++| ||..| +--.++
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk---n---gVQAmVEFdsv~~AqrAk~al--NGADIYsGCCTLK 192 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK---N---GVQAMVEFDSVEVAQRAKAAL--NGADIYSGCCTLK 192 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec---c---ceeeEEeechhHHHHHHHhhc--ccccccccceeEE
Confidence 344444 44457889999999999999999988863 2 347999999999999999999 99998 567899
Q ss_pred EEecCCcchh
Q 004006 228 VKLDDGRRLK 237 (779)
Q Consensus 228 v~~~~~~~~~ 237 (779)
|++|++.++.
T Consensus 193 IeyAkP~rln 202 (494)
T KOG1456|consen 193 IEYAKPTRLN 202 (494)
T ss_pred EEecCcceee
Confidence 9999988654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.01 Score=45.64 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=13.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAK 393 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (779)
+++.+...|...|++++|+..|+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555544
|
... |
| >KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0059 Score=55.83 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=63.0
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC--ceeeceEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG--VEFHGRVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g--~~~~~~~~~v~ 229 (779)
..|||.||...++.+.+.+.|+.||+|....++.| +.|+..|-++|+|.+.-.+.+|...+...| ....+++..|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD--~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD--DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec--ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 58999999999999999999999999997777776 458888999999999999999998873222 22356666664
Q ss_pred e
Q 004006 230 L 230 (779)
Q Consensus 230 ~ 230 (779)
-
T Consensus 110 P 110 (275)
T KOG0115|consen 110 P 110 (275)
T ss_pred h
Confidence 3
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.18 Score=51.75 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
.+...|+.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|.+.|++++|++.+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467789999999999999999999999999874 443 35999999999999999999999999885
|
|
| >KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.006 Score=59.65 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=59.1
Q ss_pred eEEeccCCCcCChHHHHHHHhcc--CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce-eeceEEEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FHGRVLTVK 229 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~-~~~~~~~v~ 229 (779)
++|+|||++.++..+|+.+|... |.-.. .++. .||+||...+..-+.+|++.+ +|.. +.|+++.|.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~-fl~k--------~gyafvd~pdq~wa~kaie~~--sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQ-FLVK--------SGYAFVDCPDQQWANKAIETL--SGKVELQGKRQEVE 71 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcc-eeee--------cceeeccCCchhhhhhhHHhh--chhhhhcCceeecc
Confidence 78999999999999999999653 21111 1222 599999999999999999998 8876 799999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
..-++..+
T Consensus 72 ~sv~kkqr 79 (584)
T KOG2193|consen 72 HSVPKKQR 79 (584)
T ss_pred chhhHHHH
Confidence 87665433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.12 Score=54.37 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=98.6
Q ss_pred HHHHHcCChHHHHHHHH--HHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 304 NYYARRGDMHRARQTFE--NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 304 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
....-.|+++++.++.+ .+.. .+ ...-.+.++..+-+.|-.+.|+++... .. +-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 44445677888766664 1111 11 244578888888888888888876533 22 23445567888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (779)
++.|.++-++. .+...|..|.....+.|+++-|+++|.+... +..|+-.|...|+.++..++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88888764432 2667888888888888888888888887654 56777788888888877777766
Q ss_pred HHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 462 LKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 462 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
....| -++....++.-.|+.++..+++..
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66553 245556666677888887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.7 Score=42.80 Aligned_cols=226 Identities=12% Similarity=0.124 Sum_probs=129.5
Q ss_pred HcCChHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHccCChHHHHHHHHH----HHHcC-CCCCHhHHHHHHHHHHccC
Q 004006 308 RRGDMHRARQTFENMRARG--IEPTLHVYTNLIHAYAVGRDMEEALSCVRK----MKEEG-IEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g-~~~~~~~~~~l~~~~~~~g 380 (779)
+..+.++|+..+..-+.+- ..--..++..+..+..+.|.+++++..--. ..+.. -..-.+.|..+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444320 000123455566777777877776653221 11110 0112345667777777777
Q ss_pred CHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCC
Q 004006 381 NAEAADHWFEEAKERHA----TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-----APIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 381 ~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~ 451 (779)
++.+++.+-..-..... ..-......+..++...+.++++++.|+...+.-.. ....++-.|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 77777766555443211 112234556778888888899999988877763211 123567788888888888
Q ss_pred HHHHHHHHHHHHH----CCCCCCHh-hHH-----HHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHH
Q 004006 452 EEKCLIVFERLKE----CGFSPSII-SYG-----CLINLYTKIGKVSKALEVSKVMKS----SGIKH-NMKTYSMLINGF 516 (779)
Q Consensus 452 ~~~a~~~~~~~~~----~g~~~~~~-~~~-----~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~ll~~~ 516 (779)
+++|+-+..+..+ .++. |.. -|. .|..++...|.+..|.+.-++..+ .|-++ -......+.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 8888877665543 2332 221 222 344556667777777666655443 33222 123445566778
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004006 517 LKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~ 534 (779)
-..|+.+.|+.-|++...
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 888888888877776543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.3 Score=43.12 Aligned_cols=155 Identities=12% Similarity=0.009 Sum_probs=103.0
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCChhhHHHHH--HHHHhcCC
Q 004006 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER-HATLNAIIYGNII--YAQCQTRN 416 (779)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~--~~~~~~g~ 416 (779)
.+.-.|+..+|...++++++. .+-|...+...-.+|...|+-+.-...++++.-. +......+|..=+ -++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 344568888888888888876 5557788888888888888888888888888765 2221222333222 33447788
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG---FSPSIISYGCLINLYTKIGKVSKALEV 493 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (779)
+++|++.-++..+.+ +.|.....++.+.+...|++.++.++..+-...- .-.-..-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 889988888888876 6677777888888888888888888766543210 000111222334445556777777777
Q ss_pred HHH
Q 004006 494 SKV 496 (779)
Q Consensus 494 ~~~ 496 (779)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 754
|
|
| >KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.004 Score=57.10 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=50.2
Q ss_pred HHHHHHHh-ccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 166 HLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 166 ~~l~~~f~-~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+++...|+ +||.|+++.|..+ ..-.-.|=++|.|...++|++|+..| ||..+.|++|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N--l~~hl~GNVYV~f~~Ee~ae~a~~~l--nnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN--LGDHLVGNVYVKFRSEEDAEAALEDL--NNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc--cchhhhhhhhhhcccHHHHHHHHHHH--cCccccCCcceeeec
Confidence 34444455 8999999877643 22333899999999999999999999 999999999999876
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.5 Score=43.76 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=102.1
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004006 364 MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM 443 (779)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 443 (779)
.|.....+++..+....++.-++.+..+|.+.| .+...|..++.+|... .-++-..+++++.+..+. |...-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 456666777777777777777777777777753 2666777777777776 455666777777776432 333344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC--C---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSP--S---IISYGCLINLYTKIGKVSKALEVSKVMKSS-GIKHNMKTYSMLINGFL 517 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~ 517 (779)
..|.+ ++.+++...|.++...-+.. + ...|..+... -..+.+..+.+..++... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 67777777777766542210 1 1123333321 134455555555555432 33333444555556666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
...++++|++++..+.+.+-+ |...-..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 677777777777777665433 4444444444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.1 Score=43.27 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=34.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
......|++.+|...|+........ +......++.+|...|+.+.|..++..+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 3455667777777777777665444 455556666666666666666666666544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.88 E-value=4.1 Score=45.76 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=25.9
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCC-C-------cccHHHHHHHHHhcCCHHHHHHHHH
Q 004006 552 CGMGNMDRAIHIVKEMQKERHRP-T-------SRTFMPIIHGFARAGEMKRALEIFD 600 (779)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~~-~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 600 (779)
+-.+++..|...++.+....... + ...+....-.+...|+.+.|+..|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34667777777777776542111 1 1111122222344677777877776
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.16 Score=48.30 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=25.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
+..|+.++...|++++|..+|..+.+..+. .-...+..|+.+..+.|+.++|..+|+++.+
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444444444444444444433211 1123344444444444444444444444444
|
|
| >KOG1855 consensus Predicted RNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0085 Score=59.00 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=54.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecC---CC-CCCC--------CcceEEEEeCCHHHHHHHHHHh
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG---YN-NFEK--------NVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~-~~~~--------~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
++++|.+-|||.+-.-+.|.++|+.+|.|+.|+|+.- .. ..|. .+-||||+|+..+.|.+|.+.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 5679999999999989999999999999999999864 00 1122 2568999999999999999887
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.1 Score=40.99 Aligned_cols=203 Identities=16% Similarity=0.160 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 004006 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRD-GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (779)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 584 (779)
...+......+...+++..+...+...... ........+..+...+...+++..+...+.......... .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555666666666665555431 112233445555555556666666666666666543332 122222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 004006 585 -GFARAGEMKRALEIFDMMRRSGC--IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLG 660 (779)
Q Consensus 585 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g 660 (779)
.+...|+++.+...+.+...... ......+......+...++++.+...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 56677777777777777654221 1123333334444666778888888888877653 22 3566777777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 661 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 661 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
+++.+...+......... ....+..+...+...+.++++...+.+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888776422 34455555555556667888888888777653
|
|
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.034 Score=47.99 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=60.6
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee--ceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~--~~~~ 226 (779)
+...++.|.+||..-+..||+..+.+.|.|....+.+| |+|.|+|...++.+-|+..| +...+. |...
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--------g~GvV~~~r~eDMkYAvr~l--d~~~~~seGe~~ 182 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--------GVGVVEYLRKEDMKYAVRKL--DDQKFRSEGETA 182 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--------cceeeeeeehhhHHHHHHhh--ccccccCcCcEe
Confidence 33458999999999999999999999999999999987 79999999999999999998 666653 4444
Q ss_pred EEEe
Q 004006 227 TVKL 230 (779)
Q Consensus 227 ~v~~ 230 (779)
.+..
T Consensus 183 yirv 186 (241)
T KOG0105|consen 183 YIRV 186 (241)
T ss_pred eEEe
Confidence 4433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.38 Score=41.94 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=48.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLH---VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
....++.|+-..|+..|+++-.....|-.. .--.-.-.+...|.|+......+-+...+-+........|.-+-.+.
T Consensus 101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka 180 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA 180 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc
Confidence 344556677777777777765542222221 01111123445566666666665555444444444445555555566
Q ss_pred CCHHHHHHHHHHHHH
Q 004006 380 GNAEAADHWFEEAKE 394 (779)
Q Consensus 380 g~~~~A~~~~~~~~~ 394 (779)
|++.+|..+|..+..
T Consensus 181 gd~a~A~~~F~qia~ 195 (221)
T COG4649 181 GDFAKAKSWFVQIAN 195 (221)
T ss_pred cchHHHHHHHHHHHc
Confidence 666666666666554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.68 E-value=4.4 Score=44.68 Aligned_cols=176 Identities=18% Similarity=0.102 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-----ccCChHHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHHcc
Q 004006 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYA-----VGRDMEEALSCVRKMKE-------EGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~l~~~~~~~ 379 (779)
..+|.+.++.....| +......+..+|. ...|.+.|+.+|+.+.+ .| ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888877775 4444444443333 44688888888888766 43 333455566666653
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----
Q 004006 380 G-----NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT---RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT---- 447 (779)
Q Consensus 380 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 447 (779)
. +.+.|+.+|.+..+.+. ...-..+..+|..- .+..+|.++|....+.|. ...+..+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 3 45567777777766542 23333333333322 345677777777766652 222333332222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004006 448 IIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG 501 (779)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (779)
...+.+.|..++.+..+.| .+....-...+..+.. +..+.+.-.+..+.+.+
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2235566666666666655 1111111112222222 55555555555555443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=3.2 Score=43.01 Aligned_cols=87 Identities=8% Similarity=0.024 Sum_probs=56.5
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC-HHHHHHHHHHHHH
Q 004006 316 RQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAADHWFEEAKE 394 (779)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 394 (779)
..+|.++..+ +.-|...|...|..+-+.+.+.+.-.+|.+|+... +-++..|-....-....+. ++.|..+|.+.+.
T Consensus 91 v~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 91 VFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 3455555443 33488888888888888888888888888887753 2245555554444444443 8888888888887
Q ss_pred cCCCCChhhHH
Q 004006 395 RHATLNAIIYG 405 (779)
Q Consensus 395 ~~~~~~~~~~~ 405 (779)
.++. +...|.
T Consensus 169 ~npd-sp~Lw~ 178 (568)
T KOG2396|consen 169 FNPD-SPKLWK 178 (568)
T ss_pred cCCC-ChHHHH
Confidence 7544 444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.58 E-value=1 Score=46.60 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 004006 650 TTIMHGYASLGDTGKAFEYFTKLRNEGL-ELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT-FVYNILI 723 (779)
Q Consensus 650 ~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 723 (779)
..+..++.+.|+.++|++.+++|.+... ..+..+...|+.++...+++.++..++.+..+...+.+. .+|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 4566677788888888888888875432 234557778888888888888888888887554433333 3455433
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.8 Score=41.59 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 403 IYGNIIYAQCQTRNME---RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 403 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
+...++.+|...+..+ +|..+++.+.... .....++..-++.+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555544433 3333444443321 222333333444444455555555555555543
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.75 Score=49.36 Aligned_cols=176 Identities=16% Similarity=0.090 Sum_probs=104.4
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHh----cCChHHHH
Q 004006 352 SCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA------IIYGNIIYAQCQ----TRNMERAE 421 (779)
Q Consensus 352 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~ 421 (779)
-+|.-++.. ++| ....++....-.|+-+.+++.+.+..+.+.-... ..|+..+..++. ..+.+.|.
T Consensus 178 G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 178 GLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 345555543 232 3445666666677777777777776654322121 223333333333 35577788
Q ss_pred HHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 422 ALVRDMEEEGIDAPIDIYH-MMMDGYTIIGNEEKCLIVFERLKEC--GF-SPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~--g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
+++..+.++ -|+...|. .-.+.+...|+.++|++.|++.... .. ......+--++-.+.-.+++++|.+.|..+
T Consensus 254 ~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 254 ELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 888888776 34444443 3346777888888888888865431 11 112334455666678888888888888888
Q ss_pred HHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 004006 498 KSSGIKHNMKTYSMLIN-GFLKLKDW-------ANVFAVFEDVMR 534 (779)
Q Consensus 498 ~~~~~~~~~~~~~~ll~-~~~~~~~~-------~~a~~~~~~~~~ 534 (779)
.+.+ ..+..+|.-+.. ++...++. ++|..+|.++..
T Consensus 332 ~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8754 334444444333 34455666 888888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.5 Score=42.05 Aligned_cols=47 Identities=13% Similarity=0.326 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHh--cC----CHHHHHHHHHHHHHC
Q 004006 559 RAIHIVKEMQKERHRPTSRTFMPIIHGFAR--AG----EMKRALEIFDMMRRS 605 (779)
Q Consensus 559 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~ 605 (779)
+.+.+++.|.+.|..-+..++.+....... .. ...++..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 334555556666555454444432222221 11 234455566666554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.17 Score=53.29 Aligned_cols=133 Identities=15% Similarity=0.246 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
....+.++..+-+.|..+.|+.+...-.. -.....+.|+++.|.++.+++ .+...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 45578889999999999999987665432 344556889999998875433 277899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
..+.|+++-|++.|.+... |..|+..|.-.|+.+.-.++.+.....|. ++....++...|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 9999999999999998753 66777888999999998888888887762 56666777788998888
Q ss_pred HHHHHH
Q 004006 456 LIVFER 461 (779)
Q Consensus 456 ~~~~~~ 461 (779)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.45 E-value=9.2 Score=47.77 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=96.3
Q ss_pred HHHHHHHccCChHHHHHHHHH----HHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 336 NLIHAYAVGRDMEEALSCVRK----MKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.+..+-.+.+.+.+|+..++. ..+. ......+..+...|+..++++....+...-.. .......|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHHHHHHHH
Confidence 444556677888888888887 3332 12344455555688899998888877764111 12344455667
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-HHHHHHcCCHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCL-INLYTKIGKVSKA 490 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A 490 (779)
...|+++.|...|+.+.+.+ +.....++.++......|.++..+...+..... .......++++ +.+.-+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 78899999999999998874 334666777777777788888777766655543 12233333333 3444667777777
Q ss_pred HHHHH
Q 004006 491 LEVSK 495 (779)
Q Consensus 491 ~~~~~ 495 (779)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.44 E-value=6.8 Score=45.27 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 004006 510 SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL----YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHG 585 (779)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (779)
.-.++.-.+.+.+.+|+.++. ++... |.....-+...+.+++|.-+|+..-+ ..-.+.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a 974 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKA 974 (1265)
T ss_pred HHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHH
Confidence 333444445555555555542 23333 33333444555666666666654322 1234556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 586 FARAGEMKRALEIFDMMRRSGCIPTVH--TFNALILGLVEKRQMEKAIEILDEMT 638 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~ 638 (779)
|..+|+|++|+.+..++... .+.. +-..|+.-+...++.-+|-+++.+..
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 77777777777777666432 1222 22456666777777777777766654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.1 Score=38.89 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 004006 616 ALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695 (779)
Q Consensus 616 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 695 (779)
.++..+.+.+.......+++.+...+ ..+...++.++..|++.+. .+..+.++. . .+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 34445555555666666666655554 2444555666666655432 233333331 1 12233344666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 696 RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR-GDVWEAADLMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 696 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
.++++..++.++.. |...+..+... ++.+.|.+++++- -+...|..++..|..
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 66666666665522 11222223333 6677777766542 155566666666543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.84 Score=39.76 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=18.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
++..+.+.|.....+..++.+...+. .+....|.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444444444444444444432 233444444444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.38 E-value=5.4 Score=43.76 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=68.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 338 IHAYAVGRDMEEALSCVRKMKEEGIEM---SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (779)
|+-+.+.+.+++|+++.+..... .+ -...+...+..+...|++++|-...-+|... +...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44456778899999887665542 22 3456788888888999999999988888754 667777777777776
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004006 415 RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI 448 (779)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (779)
++......++ ....-..+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 6665443332 221112345667777766665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.25 Score=41.68 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004006 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (779)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 689 (779)
|..++.++|.++++.|+.+....+++..-. +..+.. ...++ .-....+.|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 457889999999999999999888876542 222111 00000 1122345677777777777
Q ss_pred HHHHcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 004006 690 ACCKSGRMQSALAVTKEMSA-QKIPRNTFVYNILIDGWAR 728 (779)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 728 (779)
+|+..|++..|+++++...+ .+++.+..+|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777778888777777754 4566667777666554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.30 E-value=6.5 Score=44.17 Aligned_cols=190 Identities=12% Similarity=0.055 Sum_probs=93.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHH--HHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 004006 587 ARAGEMKRALEIFDMMRRSGC-IP-----TVHTFNALI--LGLVEKRQMEKAIEILD--------EMTLAGISPNEHTYT 650 (779)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~-~~-----~~~~~~~li--~~~~~~~~~~~A~~~~~--------~m~~~~~~~~~~~~~ 650 (779)
+-.+++..+...+..+....- .+ ....+..++ -.+...|+.+.|+..|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889999999988875421 11 112222222 33445789999999997 344444333333332
Q ss_pred H--HHHHHHhcC--CHHH--HHHHHHHHHHc-CCC--CCHHHHHHH-HHHHHHcCC--hHHHHHHHHHHHh-C--CCCCC
Q 004006 651 T--IMHGYASLG--DTGK--AFEYFTKLRNE-GLE--LDVFTYEAL-LKACCKSGR--MQSALAVTKEMSA-Q--KIPRN 715 (779)
Q Consensus 651 ~--li~~~~~~g--~~~~--a~~~~~~~~~~-~~~--~~~~~~~~l-~~~~~~~g~--~~~A~~~~~~~~~-~--~~~~~ 715 (779)
. ++..+...+ +..+ +.++++.+... .-. .+..++..+ +.++..... ..++...+.+..+ . .+..+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 112222222 2223 66666665432 112 223333333 333432222 2344443332221 1 11111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--CHHHHHHHH-----HHHHhcCCcchHHHhHhhh
Q 004006 716 ---TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ-P--DVHTYTSFI-----NACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 716 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p--d~~~~~~l~-----~a~~~~g~~~~a~~~~~~m 777 (779)
...++.|...+. .|+..|..+.........-+ + ....|..+. +.+...|+.++|.+...++
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 223455555555 78877766655544322112 2 345564333 3477789999999887764
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.027 Score=34.69 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=29.6
Q ss_pred HHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004006 270 FRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ 317 (779)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (779)
|.++++.+|. +...|+.|...|...|++++|++
T Consensus 2 y~kAie~~P~---------------n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPN---------------NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCC---------------CHHHHHHHHHHHHHCcCHHhhcC
Confidence 7889999998 78889999999999999999863
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.47 Score=40.52 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (779)
+...+..-.....+.|++++|++.|+.+..+-. .-...+.-.++.+|.+.+++++|...+++.++....--..-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 445555566667788889999999988887621 113456777888888888888888888888886543233444444
Q ss_pred HHHHHc
Q 004006 373 VGGFAK 378 (779)
Q Consensus 373 ~~~~~~ 378 (779)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.37 Score=39.74 Aligned_cols=55 Identities=20% Similarity=0.111 Sum_probs=29.3
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+++..|+++.|++.|.+.+..- +-+...||.-..++.-.|+.++|++=+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3445555555555555555542 224555555555555555555555555555543
|
|
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.023 Score=55.02 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=53.9
Q ss_pred eEEeccCCCcCChHHHHHHHhcc----CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQF----GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
-|-..+||+++++.++.++|..- |..+.|-++. +..||..|-|||.|..+++|+.|+.. |...++-|.|.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlfa~ee~aq~aL~k---hrq~iGqRYIE 236 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLFACEEDAQFALRK---HRQNIGQRYIE 236 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEecCHHHHHHHHHH---HHHHHhHHHHH
Confidence 55667999999999999999742 3455666665 45699999999999999999999976 45455544443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.11 E-value=6.7 Score=43.29 Aligned_cols=177 Identities=13% Similarity=0.057 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHH-----HHccCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhc
Q 004006 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGG-----FAKMGNAEAADHWFEEAKE-------RHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 414 (779)
..+|.++++...+.| +......++.+ +....+.+.|+.+|..+.+ .+ +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888876 44444444433 3355789999999999877 33 444666777777764
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH---
Q 004006 415 R-----NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNEEKCLIVFERLKECGFSPSIISYGCLINLYTK--- 483 (779)
Q Consensus 415 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--- 483 (779)
. +.+.|..++.+..+.|. ++.. ..+..+|..- .+..+|.++|....+.|.. ..+-.+..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 3 56678888888887763 2222 2233333222 3567888888888777643 222223322222
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 484 -IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (779)
Q Consensus 484 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (779)
..+.+.|..++++.-+.| .+....-...+..+.. +.++.+...+..+...|.
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 236777778887777766 2222222222333333 666666666665555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.32 Score=46.29 Aligned_cols=97 Identities=11% Similarity=0.112 Sum_probs=68.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG--IDAPIDIYHMMM 443 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~ 443 (779)
.|+.-+..| +.|++.+|...|...++..+. ....+++-|+.++...|++++|..+|..+.+.- .+.-...+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555444 667788888888888776432 244567778888888888888888888887752 122345667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004006 444 DGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
.+....|+.++|..+|.++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777888888888888877765
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.7 Score=36.10 Aligned_cols=57 Identities=9% Similarity=0.209 Sum_probs=25.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
.+....|+-+.-.+++.++.+. -.++......+..+|.+.|+..++.+++.+.-+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444455555555555555432 23444444555555555555555555555555444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.01 E-value=4.2 Score=40.36 Aligned_cols=156 Identities=12% Similarity=0.137 Sum_probs=93.2
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCH------hhHHHHHHHHHccCChHHHHHHHHHHHHc----C----CCCC-----
Q 004006 307 ARRGDMHRARQTFENMRARG--IEPTL------HVYTNLIHAYAVGRDMEEALSCVRKMKEE----G----IEMS----- 365 (779)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g----~~~~----- 365 (779)
.+.|+++.|..++.++.... ..|+. ..||.-...+.+..++++|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998887642 12222 13444444444433888888777765432 1 1122
Q ss_pred HhHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAE---AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (779)
..++..++.+|...+..+ +|.++++.+...... ...++..-+.++.+.++.+++.+.+.+|+..- ......+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 346677788888777654 566666666544322 45566566777777899999999999999862 2223344444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHC
Q 004006 443 MDGY---TIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 443 ~~~~---~~~g~~~~a~~~~~~~~~~ 465 (779)
+..+ .... ...+...++.+...
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHH
Confidence 4443 3322 33455555555443
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.4 Score=38.65 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=57.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChH
Q 004006 343 VGRDMEEALSCVRKMKEEGIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI---IYGNIIYAQCQTRNME 418 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 418 (779)
+.+..++|+.-|..+.+.|..- -+....-+.......|+...|...|+++-.....|-.. .-..-...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3455566666666665554331 11122223334455566666666666665432222111 1111122334555566
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 419 RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 419 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
......+-+...+.+.....-..|.-+-.+.|++.+|.++|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555554444333333444455555556666666666655544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.46 Score=44.87 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=59.5
Q ss_pred CHhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 004006 470 SIISYGCLINLYTK-----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL----------------KDWANVFAV 528 (779)
Q Consensus 470 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~ 528 (779)
|..+|-.++..+.. .+.++-....++.|.+.|+..|..+|+.||+.+=+. .+-+-++.+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444332 244555555556666666666666666666555332 233557788
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 004006 529 FEDVMRDGLKPDVVLYNNIIRAFCGMGN-MDRAIHIVKEMQK 569 (779)
Q Consensus 529 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 569 (779)
+++|...|+.||..+-..|++++.+.+- ..+..+++-.|.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 8888888888888888888888877765 3334444444443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.85 E-value=7.4 Score=42.46 Aligned_cols=170 Identities=12% Similarity=0.106 Sum_probs=82.6
Q ss_pred HHHHHHcCChHHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHcc---------C--C-----hHHHHHHHHHHHHcCCCCC
Q 004006 303 VNYYARRGDMHRARQTFENMR-ARGIEPTLHVYTNLIHAYAVG---------R--D-----MEEALSCVRKMKEEGIEMS 365 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~---------g--~-----~~~A~~~~~~m~~~g~~~~ 365 (779)
-..|.-.|+|++|+..--..- ...+..+...+.+++.-|... + . .++-..++++|+.+... +
T Consensus 66 SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~-d 144 (929)
T KOG2062|consen 66 SKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD-D 144 (929)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh-h
Confidence 467888899999988655542 223444555555555443321 1 1 23344556666654322 2
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHH-HHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEA-KERHATLNAIIYGNIIYAQCQTRN-MERAEALVRDMEEEGIDAPIDIYHMMM 443 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 443 (779)
...+ .++.......+ +.+++++ .+.+. +......++..+....+ .+--.++++.+.+.=.+....-|..+.
T Consensus 145 ~e~~-~aiGia~E~~r----ld~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc 217 (929)
T KOG2062|consen 145 NEYK-QAIGIAFETRR----LDIIEEAILKSDS--VIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVC 217 (929)
T ss_pred hHHH-HHHhHHhhhhh----HHHHHHHhccccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeee
Confidence 2222 22222222222 2233332 22221 22233333333333322 222334444444321122223356678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 482 (779)
++|.-..+.+.+..+++++.+.. .....|....+.|-
T Consensus 218 ~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~e 254 (929)
T KOG2062|consen 218 QCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLYE 254 (929)
T ss_pred eeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHhh
Confidence 88889999999999999998742 12345555555443
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.80 E-value=8.3 Score=42.76 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHH
Q 004006 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGY-ASLGDTGKAFEYFTKLRNEGLELDVF-TYEALLKACCKSGRMQSALAVT 704 (779)
Q Consensus 627 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 704 (779)
++.|...|.........+...+.......+ ..+++.+.++.+++.+...|.. +.. .|...++.-...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 445555555544331122222222222222 3456789999999988877632 333 5666666666778888888888
Q ss_pred HHHHhCCCCCC
Q 004006 705 KEMSAQKIPRN 715 (779)
Q Consensus 705 ~~~~~~~~~~~ 715 (779)
+.....-..++
T Consensus 521 R~ay~~~~~~~ 531 (881)
T KOG0128|consen 521 RKAYSQVVDPE 531 (881)
T ss_pred HHHHhcCcCch
Confidence 77765543443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.55 Score=38.75 Aligned_cols=93 Identities=24% Similarity=0.185 Sum_probs=59.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHcc
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKM 379 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~ 379 (779)
..+++..|+++.|++.|...+..- .-....||.-..++.-.|+.++|++-+++.++..-... ...|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 456677888888888888877653 23667788888888888888888888887776432211 11233334445555
Q ss_pred CCHHHHHHHHHHHHHcC
Q 004006 380 GNAEAADHWFEEAKERH 396 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~ 396 (779)
|+-+.|..=|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66666666665555544
|
|
| >KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.035 Score=60.40 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=67.9
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee--ceE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GRV 225 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~--~~~ 225 (779)
......++||+|+.|+....|...|..||.|..|.+-.. --|++|.|++...++.|...| -|..|+ .+.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-------q~yayi~yes~~~aq~a~~~~--rgap~G~P~~r 522 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-------QPYAYIQYESPPAAQAATHDM--RGAPLGGPPRR 522 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-------CcceeeecccCccchhhHHHH--hcCcCCCCCcc
Confidence 344569999999999999999999999999998766432 569999999999999999999 999996 477
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
++|.++....
T Consensus 523 ~rvdla~~~~ 532 (975)
T KOG0112|consen 523 LRVDLASPPG 532 (975)
T ss_pred cccccccCCC
Confidence 8999987654
|
|
| >KOG2068 consensus MOT2 transcription factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.013 Score=56.37 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=64.0
Q ss_pred ceEEeccCCCcCChHHH---HHHHhccCCeeEEEEecCCCCCCCCc--ceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 152 GKIFVGNLPNWIKKHLV---MEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l---~~~f~~~g~i~~~~~~~~~~~~~~~~--g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.-+||-+|+...-++++ .+.|.+||.|..|.+.++......+. .-++|+|+..++|..||... +|..++|+.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v--~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDV--DGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHh--hhHHhhhhhh
Confidence 46788899888776655 35899999999998888721111111 12699999999999999999 9999999999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+..+...+.
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 988876663
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.094 Score=34.68 Aligned_cols=28 Identities=11% Similarity=0.361 Sum_probs=13.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
|..+...|...|++++|+++|+++.+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4444455555555555555555555443
|
|
| >PRK15319 AIDA autotransporter-like protein ShdA; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.051 Score=64.29 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=6.0
Q ss_pred CCceeeceEEEEEe
Q 004006 217 DGVEFHGRVLTVKL 230 (779)
Q Consensus 217 ~g~~~~~~~~~v~~ 230 (779)
+|.++++ .++..|
T Consensus 1858 sG~YVDs-wlQy~w 1870 (2039)
T PRK15319 1858 SGAYVDS-WYQYGF 1870 (2039)
T ss_pred cceEEEE-EEEeeE
Confidence 4555554 333344
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.46 E-value=5.8 Score=39.47 Aligned_cols=130 Identities=17% Similarity=0.265 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--CC----CHHHHHHHHHHHHHcCCCC---CcccHHHHHHHHHhcCC-
Q 004006 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG--MG----NMDRAIHIVKEMQKERHRP---TSRTFMPIIHGFARAGE- 591 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~- 591 (779)
+++.+.+++.|.+.|+..+.++|-+....... .. ...+|..+|+.|++..... +...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556667777777777666555443332222 22 2456777888887765332 23334444322 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 592 ---MKRALEIFDMMRRSGCIPTV--HTFNALILGLVEKRQ--MEKAIEILDEMTLAGISPNEHTYTTIM 653 (779)
Q Consensus 592 ---~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~~~~~~~~~li 653 (779)
.+.++.+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.+++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 24556666666665554322 222222222111111 335666666777777666666555544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.38 E-value=19 Score=45.20 Aligned_cols=312 Identities=9% Similarity=0.045 Sum_probs=170.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 371 IIVGGFAKMGNAEAADHWFEEA----KERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (779)
++..+-.+++.+.+|+..++.- .+. ......+..+...|...++.|...-+...-... . .+...+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-----~-sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-----P-SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-----c-cHHHHHHHH
Confidence 5666777889999999999883 221 113345556666999999999888877642221 1 233455567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 004006 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSML-INGFLKLKDWANV 525 (779)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a 525 (779)
...|++..|...|+.+.+.+.. ....++.++......|.++..+-..+-...+. ......++.+ +.+--+.++|+..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 7899999999999999986422 36678888888788888888877666555432 2223333332 2333567777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--HHHHHhCCCHH--HHHHHHHHHHHcCCCC---------CcccHHHHHHHHHhcCCH
Q 004006 526 FAVFEDVMRDGLKPDVVLYNNI--IRAFCGMGNMD--RAIHIVKEMQKERHRP---------TSRTFMPIIHGFARAGEM 592 (779)
Q Consensus 526 ~~~~~~~~~~g~~~~~~~~~~l--~~~~~~~g~~~--~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~ 592 (779)
...+. .. +..+|... +....+..+-+ .-...++.+...-+.+ -...|..++....-..-
T Consensus 1538 e~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el- 1609 (2382)
T KOG0890|consen 1538 ESYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL- 1609 (2382)
T ss_pred hhhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-
Confidence 76655 11 22233332 22222222211 1112222222211110 01122222222111110
Q ss_pred HHHHHHHHHHHHCCCCCC------HHHHHHHH---HHHHhcCCHHHHHHHHHH-HHHCCCC-----CCHHHHHHHHHHHH
Q 004006 593 KRALEIFDMMRRSGCIPT------VHTFNALI---LGLVEKRQMEKAIEILDE-MTLAGIS-----PNEHTYTTIMHGYA 657 (779)
Q Consensus 593 ~~a~~~~~~~~~~~~~~~------~~~~~~li---~~~~~~~~~~~A~~~~~~-m~~~~~~-----~~~~~~~~li~~~~ 657 (779)
....+... +..++ ...|.+-+ ..+.+ ..+-+--+++ +...... --..+|........
T Consensus 1610 ---~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR 1681 (2382)
T KOG0890|consen 1610 ---ENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR 1681 (2382)
T ss_pred ---HHHHHHhh--ccCccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 00111111 11111 11222221 12222 2222222222 2221111 22467888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 658 SLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 658 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
+.|.++.|...+-.+.+.+ . ...+.-.++.+...|+-..|+.++++..+.+
T Consensus 1682 ~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8999999999888888776 2 3355667788889999999999999988654
|
|
| >KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.077 Score=54.85 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=64.3
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhc-cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee---ec
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQ-FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HG 223 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~---~~ 223 (779)
...+..|+|.||-.-.|...|+.++.+ +|.|.+. -+| +-|..|||.|.+.+.|.+.+.+| ||... ++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD-----kIKShCyV~yss~eEA~atr~Al--hnV~WP~sNP 511 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD-----KIKSHCYVSYSSVEEAAATREAL--HNVQWPPSNP 511 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH-----HhhcceeEecccHHHHHHHHHHH--hccccCCCCC
Confidence 345679999999999999999999985 6667665 233 23779999999999999999999 99986 78
Q ss_pred eEEEEEecCCc
Q 004006 224 RVLTVKLDDGR 234 (779)
Q Consensus 224 ~~~~v~~~~~~ 234 (779)
+.|.+.|..-.
T Consensus 512 K~L~adf~~~d 522 (718)
T KOG2416|consen 512 KHLIADFVRAD 522 (718)
T ss_pred ceeEeeecchh
Confidence 89999887443
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.26 Score=54.51 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.7
Q ss_pred ceEEEEEe
Q 004006 223 GRVLTVKL 230 (779)
Q Consensus 223 ~~~~~v~~ 230 (779)
|+.+.|..
T Consensus 534 g~~~~v~c 541 (585)
T PRK14950 534 GKTCAVRC 541 (585)
T ss_pred CCceEEEE
Confidence 44444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.12 Score=34.10 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNL 337 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 337 (779)
.|..+...|.+.|++++|+++|+++++.... |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4555667777777777777777777766322 44444433
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.3 Score=54.12 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=3.2
Q ss_pred eceEEEEE
Q 004006 222 HGRVLTVK 229 (779)
Q Consensus 222 ~~~~~~v~ 229 (779)
.|..+.+.
T Consensus 499 ~~~~l~l~ 506 (585)
T PRK14950 499 EKNTLTLS 506 (585)
T ss_pred cCCEEEEe
Confidence 34444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.8 Score=37.01 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=22.6
Q ss_pred ccCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 343 VGRDMEEALSCVRKMKEEGI--EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+.|++++|.+.|+.+..+-. +-.......|+.+|.+.+++++|+..+++.++.+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34445555444444443210 1122333344444444444444444444444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.81 Score=44.05 Aligned_cols=135 Identities=17% Similarity=0.172 Sum_probs=93.6
Q ss_pred cchhhhhhH-HHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHh
Q 004006 257 STWHKEREW-HRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARG---IEPTLH 332 (779)
Q Consensus 257 ~~~~~~~~~-a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ 332 (779)
|++-.+++| ++..+.-.+..-.. .|...|.+....+..+...++..-....+.+.++.++-++...- ..+ ..
T Consensus 27 S~fs~e~~w~~r~~~~~kla~~g~---~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~-~~ 102 (418)
T KOG4570|consen 27 SAFSDEHKWEAREKEHYKLADLGS---LMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLR-NW 102 (418)
T ss_pred HHhhhhhhhhHHHHHHHHHhcccc---cchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhc-cc
Confidence 334444433 77777755544332 45566777776677777777777777788888888887776531 011 12
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+-..+++.|.+ -+.++++.++..=+.-|+-+|.++++.+++.+.+.+++.+|..+.-.|..+.
T Consensus 103 ~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 103 TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 23344455544 3567888888888889999999999999999999999999998887777653
|
|
| >PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN) | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.31 Score=36.55 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=40.6
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
.+|--..|......||.++|+.||.|. |..+.| .-|||...+.+.+..++..+
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d--------TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND--------TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT--------TEEEEEECCCHHHHHHHHHH
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC--------CcEEEEeecHHHHHHHHHHh
Confidence 344444999999999999999999976 666655 57999999999999999887
|
; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=10 Score=39.60 Aligned_cols=180 Identities=9% Similarity=0.095 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (779)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 619 (779)
|....-+++..+.......-...+..+|..-|- +-..+..++.+|..+ .-++-..+++++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 555666777888877778778888888877653 455677788888877 556777888888887654 5544455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH
Q 004006 620 GLVEKRQMEKAIEILDEMTLAGISP-----NEHTYTTIMHGYASLGDTGKAFEYFTKLRN-EGLELDVFTYEALLKACCK 693 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 693 (779)
.|-+ ++.+++..+|.++...-+.- -...|..|...- ..+.+..+.+..++.. .|..--.+.+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5544 77788888888877543221 123455554321 3457777777777764 3444556677777788888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004006 694 SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA 727 (779)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (779)
..++.+|++++..+.+.+ ..|...-..++..+.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 889999999999888776 455555555555544
|
|
| >KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.035 Score=60.34 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=68.8
Q ss_pred hhhccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 145 ~~~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
..+...+.+||+|||...+++.+++..|..+|.|.+|.|-+-+. +.-.-||||.|.+.+.+-+|...+ .|..|..-
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~--~~esa~~f~~~~n~dmtp~ak~e~--s~~~I~~g 441 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI--KTESAYAFVSLLNTDMTPSAKFEE--SGPLIGNG 441 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC--CcccchhhhhhhccccCcccchhh--cCCccccC
Confidence 34556667999999999999999999999999999999876422 333569999999999999999888 88888655
Q ss_pred EEEEEecC
Q 004006 225 VLTVKLDD 232 (779)
Q Consensus 225 ~~~v~~~~ 232 (779)
.+++.+..
T Consensus 442 ~~r~glG~ 449 (975)
T KOG0112|consen 442 THRIGLGQ 449 (975)
T ss_pred cccccccc
Confidence 66666653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.52 Score=44.54 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004006 609 PTVHTFNALILGLVE-----KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT 683 (779)
Q Consensus 609 ~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 683 (779)
.|..+|-..+..+.. .+.++=....++.|.+.|+.-|..+|+.|+..+-+-.- .|. .+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence 355666666655543 23455555556666666666666677666665433211 111 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 004006 684 YEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDV-WEAADLMQQMK 743 (779)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 743 (779)
+..+.-.|-+. -+-+..++++|...|+.||.++-..|+++|.+.+.. .+...++-.|-
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 12222122221 245678888888888888888888888888887753 23333333343
|
|
| >PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.2 Score=45.30 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=47.6
Q ss_pred hHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhC--CceeeceEEEEEecCCc
Q 004006 165 KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRVLTVKLDDGR 234 (779)
Q Consensus 165 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--g~~~~~~~~~v~~~~~~ 234 (779)
...|+++|..|+.+..+...+. .+-..|.|.+.+.|.+|...+ + +..+.|..++|.++...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s-------FrRi~v~f~~~~~A~~~r~~l--~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS-------FRRIRVVFESPESAQRARQLL--HWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT-------TTEEEEE-SSTTHHHHHHHTS--T--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC-------CCEEEEEeCCHHHHHHHHHHh--cccccccCCCceEEEEcccc
Confidence 4788999999999999888876 678899999999999999998 8 99999999999988444
|
Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.46 E-value=9 Score=43.71 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=24.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 620 GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 658 (779)
.|+.....+-++.+++.+....-..+....+.++..|..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 455556666777777777665545566666666666643
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.32 E-value=11 Score=38.63 Aligned_cols=56 Identities=21% Similarity=0.183 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
.|+.-|...|+..+|..+++++---- --..+++.+++.+.-+.|+-...+.+++..
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34444444444444444444432110 113334444444444444444344444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=6.9 Score=35.86 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=77.4
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG-IDAPIDIYHMMMD 444 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~ 444 (779)
..+||.|.--+...|+++.|.+.|+...+.++..+-...+ -+.++.--|++.-|.+-|-..-+.+ ..|-...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN-Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN-RGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc-cceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5567777777777788888888888877776553333333 2333334577777776666655543 1222222322221
Q ss_pred HHHhcCCHHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHH
Q 004006 445 GYTIIGNEEKCLI-VFERLKECGFSPSIISYGCLINLYT-KIGKVSKALEVSKVMKSSGIKHN-------MKTYSMLING 515 (779)
Q Consensus 445 ~~~~~g~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~ll~~ 515 (779)
+.-+..+|.. +.++..+. |..-|...|..|. ..=..+. +++++.... .-+ +.+|--|...
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKADA-TDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Confidence 2233444443 33333332 3344433332222 1111111 222222110 101 2345555666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 004006 516 FLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 516 ~~~~~~~~~a~~~~~~~~~~ 535 (779)
|...|+.++|..+|+-.+..
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 66677777777777766654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.10 E-value=1 Score=40.96 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (779)
+..+..+...|++.|+.++|++.|.++...-..+ -...+-.+|......+++..+...+.+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3457778889999999999999999987763322 234567777777788888888877766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.04 E-value=8.7 Score=36.82 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=47.3
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
=|-|-+.++. .-..+..+|++||.|.+... ++...+-+|.|.+..+|++|+.. ||+.|+|..+
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~-------~~ngNwMhirYssr~~A~KALsk---ng~ii~g~vm 261 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVT-------PSNGNWMHIRYSSRTHAQKALSK---NGTIIDGDVM 261 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeec-------CCCCceEEEEecchhHHHHhhhh---cCeeeccceE
Confidence 3445566655 34567789999999876433 33357999999999999999976 8999988654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.1 Score=43.34 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTYTSF 757 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~~l 757 (779)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.. .|+.|-..+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555666666666666666666666554 45555666666666666666666666665543 3666666655555
Q ss_pred HHH
Q 004006 758 INA 760 (779)
Q Consensus 758 ~~a 760 (779)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.94 E-value=8.9 Score=36.93 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTYT 755 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~ 755 (779)
+++.....|..+|.+.+|.++.++....+ +.+...|-.|+..|+..|+--+|.+-++++.+ .|+.-|..+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 45667778999999999999999998877 77888888999999999997778777777643 36666554443
|
|
| >KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.17 Score=52.00 Aligned_cols=75 Identities=9% Similarity=0.249 Sum_probs=62.1
Q ss_pred cccceEEeccCCCcCChHHHHHHHhc--cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQ--FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
...|-+.+..+|..+..++++.+|+. |-.+.+|.+... .+ =||+|++..+|+.|.+.|...-+.|.||+|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DN-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------Cc-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 45678899999999999999999975 888888887654 33 389999999999999998666777889988
Q ss_pred EEEec
Q 004006 227 TVKLD 231 (779)
Q Consensus 227 ~v~~~ 231 (779)
...+.
T Consensus 245 mARIK 249 (684)
T KOG2591|consen 245 MARIK 249 (684)
T ss_pred hhhhh
Confidence 76543
|
|
| >PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.59 Score=35.14 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=35.5
Q ss_pred CcCChHHHHHHHhccCC-----eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 161 NWIKKHLVMEFFRQFGP-----IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 161 ~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
..++..+|..++..-+. |-.++|.. .|.||+- ..+.+..++..+ ++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---------~~S~vev-~~~~a~~v~~~l--~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD---------NFSFVEV-PEEVAEKVLEAL--NGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S---------S-EEEEE--TT-HHHHHHHH--TT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee---------eEEEEEE-CHHHHHHHHHHh--cCCCCCCeeEEEEEC
Confidence 35678888888876644 44677764 4999997 455788999999 999999999999865
|
; PDB: 2G0C_A 3MOJ_B. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.57 E-value=3 Score=47.44 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=15.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 004006 302 MVNYYARRGDMHRARQTFENMR 323 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~ 323 (779)
-|..+.+.++|++|+.+...|.
T Consensus 1003 ~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1003 QLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHHhhccHHHHHHHHHHHh
Confidence 3555666677777777777766
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.51 E-value=7.3 Score=34.63 Aligned_cols=137 Identities=7% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHH
Q 004006 351 LSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN--MERAEALVRDME 428 (779)
Q Consensus 351 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 428 (779)
.+.++.+.+.|+.++...+..+++.+.+.|++.....++.--.-. |....-..+..+..... .+-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~----DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIP----DSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC----CcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004006 429 EEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (779)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (779)
.. +..+++.+...|++-+|+++....... +......++.+..+.++...-..+|+-..+++.+
T Consensus 90 ~~--------~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 90 TA--------YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred hh--------HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHh
|
|
| >KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.48 Score=51.55 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=64.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--eceEEEEEe
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTVKL 230 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~--~~~~~~v~~ 230 (779)
+.++-|..-..+...|-.+|+.||.|.+....+| ...+.|+|.+.++|..|..++ +|+.+ .|-+.+|.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-------~N~alvs~~s~~sai~a~dAl--~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-------LNMALVSFSSVESAILALDAL--QGKEVSVTGAPSRVSF 370 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-------ccchhhhhHHHHHHHHhhhhh--cCCcccccCCceeEEe
Confidence 5666777778899999999999999999998888 678999999999999999999 99886 688999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
|+.-
T Consensus 371 ak~~ 374 (1007)
T KOG4574|consen 371 AKTL 374 (1007)
T ss_pred cccc
Confidence 8754
|
|
| >PRK15313 autotransport protein MisL; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.41 Score=53.56 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.8
Q ss_pred Cceeec
Q 004006 218 GVEFHG 223 (779)
Q Consensus 218 g~~~~~ 223 (779)
|..+++
T Consensus 771 G~YVDs 776 (955)
T PRK15313 771 GAYVDT 776 (955)
T ss_pred cEEEee
Confidence 444444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.19 Score=30.94 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=16.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 705 KEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (779)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (779)
++.++.+ |.+...|+.|..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344433 445555666666666666655554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.19 E-value=3.1 Score=37.50 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=49.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTL------HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
.+-+..+|++.+|..-|.+++.. .|.. ..|..-..++.+.+.++.|++-..+.++.+.. ......--..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 45556677777777777777664 2221 23444445555666666666666666655421 222223334455
Q ss_pred HccCCHHHHHHHHHHHHHcC
Q 004006 377 AKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~ 396 (779)
-+..++++|+.=|.++.+.+
T Consensus 179 ek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhC
Confidence 55666666666666665553
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.9 Score=46.57 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 004006 317 QTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (779)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (779)
.+|+++....+.|...-.-.-|..+.+.++|++|+.+...|.
T Consensus 983 ~L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 983 ILFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 355555554455555555555556667788888888888877
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.7 Score=39.53 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
..+..+...|.+.|+.++|++.|.++.+....+ -...+..++......+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777888888888888888877653332 244566777777777777777777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.34 Score=30.25 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=13.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEA 392 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~ 392 (779)
|..|..+|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555666666666555553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.85 E-value=13 Score=35.93 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHH------HcCC-----hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH-----
Q 004006 295 SRREFGLMVNYYA------RRGD-----MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK----- 358 (779)
Q Consensus 295 ~~~~~~~li~~~~------~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 358 (779)
...+|.+.+.++. ++|. ..+|+++|..++.+. --..+-+.+|.++....+..+|...+...+
T Consensus 121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRK 198 (361)
T COG3947 121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRK 198 (361)
T ss_pred chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence 4455666666665 2221 478999999998763 234666778888888888887776654332
Q ss_pred --H-cCCCCCHhHHHHHHHHHH-cc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HhcCChHHHHHHHHH
Q 004006 359 --E-EGIEMSLVTYSIIVGGFA-KM----GNAEAADHWFEEAKERHATLNAIIYGNIIYAQ----CQTRNMERAEALVRD 426 (779)
Q Consensus 359 --~-~g~~~~~~~~~~l~~~~~-~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~ 426 (779)
. .|.. ..+|+.. ..|. .. -++.+-+...+.+.... .+..-+..++..| .....+..|...-+.
T Consensus 199 aLs~L~~n-e~vts~d--~~Ykld~~~~k~Dv~e~es~~rqi~~in--ltide~kelv~~ykgdyl~e~~y~Waederer 273 (361)
T COG3947 199 ALSRLNAN-EAVTSQD--RKYKLDAGLPKYDVQEYESLARQIEAIN--LTIDELKELVGQYKGDYLPEADYPWAEDERER 273 (361)
T ss_pred HhchhccC-ceEEEcC--CceEEecCCccccHHHHHHHhhhhhccc--cCHHHHHHHHHHhcCCcCCccccccccchHHH
Confidence 1 0000 0000000 0000 00 02223333333333221 2333333333333 111222222222111
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC
Q 004006 427 MEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS-----SG 501 (779)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~ 501 (779)
+... -..+++.....|..+|.+.+|..+..+.+... +.+...+-.|+..+...|+--.+.+-++.+.+ .|
T Consensus 274 le~l----y~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelg 348 (361)
T COG3947 274 LEQL----YMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELG 348 (361)
T ss_pred HHHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhC
Confidence 1111 01223445567788888888888888777653 23666777788888888886666666555532 35
Q ss_pred CCCCHHHH
Q 004006 502 IKHNMKTY 509 (779)
Q Consensus 502 ~~~~~~~~ 509 (779)
+..+...+
T Consensus 349 i~vddsie 356 (361)
T COG3947 349 IDVDDSIE 356 (361)
T ss_pred CCcchhHH
Confidence 55554433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.70 E-value=16 Score=36.65 Aligned_cols=150 Identities=19% Similarity=0.140 Sum_probs=83.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----c
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG----RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----M 379 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~ 379 (779)
..+++..+...+......+ +......+...|... .+..+|.++|+.+.+.| .......|..+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4556777777777776643 224444444444432 45777888888777765 34455556666665 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-------NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI---- 448 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 448 (779)
.+..+|..+|+++.+.|...-..+...+...|..-. +...|...|.++...+ +......+..+|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 477888888888888764422222444444443321 2235666666666554 33333334433322
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 004006 449 IGNEEKCLIVFERLKECG 466 (779)
Q Consensus 449 ~g~~~~a~~~~~~~~~~g 466 (779)
..+.++|..+|.+..+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 235566666666665554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.60 E-value=7.2 Score=35.24 Aligned_cols=143 Identities=13% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHH
Q 004006 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEAL--LKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 630 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 707 (779)
.+++|+.-......--...|..++.......- +.....+++....-+...-++..| ...+..+|++++|..-++..
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~--~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~ 115 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP--KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q ss_pred HhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 708 SAQKIPRNTFVY--NILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 708 ~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
...-..-+.... -.|..+....|.+++|+.+++...+.++ .......-++++...|+.++|+.-|+.
T Consensus 116 l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~k 184 (207)
T COG2976 116 LAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEK 184 (207)
T ss_pred HccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHH
|
|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.56 E-value=3.3 Score=45.59 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=3.6
Q ss_pred EEEeCCH
Q 004006 198 FVIYDGP 204 (779)
Q Consensus 198 fv~f~~~ 204 (779)
||+|.+.
T Consensus 231 FV~fid~ 237 (887)
T KOG1985|consen 231 FVEFIDQ 237 (887)
T ss_pred eEEecCC
Confidence 5666433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=1.4 Score=42.95 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=46.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
+.|.+.|++++|+.+|.+.....+. |.+++..-..+|.+...|..|+.-....+..+ ..-+-.|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 3466666666666666665554322 66666666666666666666655555554432 111223333333334445555
Q ss_pred HHHHHHHHHHH
Q 004006 454 KCLIVFERLKE 464 (779)
Q Consensus 454 ~a~~~~~~~~~ 464 (779)
+|.+-++..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.47 Score=29.63 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 718 VYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
+|..|..+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888854
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.2 Score=43.46 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=63.5
Q ss_pred HHHHHhhhc-ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004006 239 KAEVRARWV-AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ 317 (779)
Q Consensus 239 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (779)
....+.+.. |.|.|.+ ++|+++|.+.+..+|. ++..|..-..+|.+..+|..|..
T Consensus 97 ~SEiKE~GN~yFKQgKy---------~EAIDCYs~~ia~~P~---------------NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKY---------EEAIDCYSTAIAVYPH---------------NPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hHHHHHhhhhhhhccch---------hHHHHHhhhhhccCCC---------------CccchhhHHHHHHHHHHHHHHHH
Confidence 334444444 8888888 8888888888887775 55666666777888888877777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 318 TFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
-++.++..+ ..-...|..-..+-...|...+|.+-++..++.
T Consensus 153 DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 153 DCEAAIALD-KLYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 777776653 112234555555555556666776666666664
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.31 E-value=20 Score=37.06 Aligned_cols=256 Identities=9% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHH
Q 004006 476 CLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG----LKPDVVLYNNIIRAF 551 (779)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l~~~~ 551 (779)
..+.+.-+.|+++...++......... +...+..+... ..++++++....+.+...- .......|......+
T Consensus 3 ~~~eaaWrl~~Wd~l~~~~~~~~~~~~--~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 3 LAAEAAWRLGDWDLLEEYLSQSNEDSP--EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHHhcCChhhHHHHHhhccCCCh--hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 552 CGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAI 631 (779)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 631 (779)
.+...+.+..++.+-....... ..+.....+.++.-...- .++..+|..++..-.-.-..-
T Consensus 79 ~~lq~L~Elee~~~~~~~~~~~---------------~~~~~~l~~~W~~Rl~~~-~~~~~~~~~il~~R~~~l~~~--- 139 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNLSQN---------------PQDLKSLLKRWRSRLPNM-QDDFSVWEPILSLRRLVLSLI--- 139 (352)
T ss_pred HHHhHHHHHHHHHHHHHhhccc---------------HHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHhcc---
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 632 EILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL---DVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 632 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
........+|..++..+.+.|.++.|...+.++...+... ...+...-++.+...|+-.+|...++...
T Consensus 140 --------~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 140 --------LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred --------cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q ss_pred hCCCCCC---------------------------------HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCC
Q 004006 709 AQKIPRN---------------------------------TFVYNILIDGWARR------GDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 709 ~~~~~~~---------------------------------~~~~~~l~~~~~~~------g~~~~A~~~~~~m~~~g~~p 749 (779)
...+..+ ...+..+..-+... +..+++.+.|+++.+. ..-
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~ 290 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-DPS 290 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh-Chh
Q ss_pred CHHHHHHHHHHHHh
Q 004006 750 DVHTYTSFINACKC 763 (779)
Q Consensus 750 d~~~~~~l~~a~~~ 763 (779)
....|..+...|.+
T Consensus 291 ~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 291 WEKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHHH
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.29 E-value=2.4 Score=38.11 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=72.7
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
+.+.|++ +.|...|..+++.-|.....+.+ ..|..-..++.+.+.++.|+.-+.+.++.+.
T Consensus 105 ~F~ngdy---------eeA~skY~~Ale~cp~~~~e~rs----------Ily~Nraaa~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 105 LFKNGDY---------EEANSKYQEALESCPSTSTEERS----------ILYSNRAAALIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred hhhcccH---------HHHHHHHHHHHHhCccccHHHHH----------HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence 4567888 99999999999887754333222 2355556788899999999999999999863
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 361 (779)
. .......-..+|.+...+++|++-|.++++..
T Consensus 166 t-y~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 166 T-YEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred h-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 2 44455566778999999999999999999864
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.7 Score=38.56 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHCCCC
Q 004006 260 HKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD-----------MHRARQTFENMRARGIE 328 (779)
Q Consensus 260 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~~~~~~~~ 328 (779)
+.-.++|+..|.+++.++|. ....+..+.++|...+. |++|...|+++... .
T Consensus 48 ~~miedAisK~eeAL~I~P~---------------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~ 110 (186)
T PF06552_consen 48 KKMIEDAISKFEEALKINPN---------------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--D 110 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhcCCc---------------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--C
Q ss_pred CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 004006 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI 362 (779)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 362 (779)
|+..+|+.-+....+ |-+++.++.+.+.
T Consensus 111 P~ne~Y~ksLe~~~k------ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 111 PNNELYRKSLEMAAK------APELHMEIHKQGL 138 (186)
T ss_dssp TT-HHHHHHHHHHHT------HHHHHHHHHHSSS
T ss_pred CCcHHHHHHHHHHHh------hHHHHHHHHHHHh
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening [] | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.4 Score=35.87 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=48.7
Q ss_pred eEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
.+-+...|..++.++|..+.+.+- .|..++|++| ...++--+.+.|.+..+|..=...+ ||+.++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird---~~pnrymVLikF~~~~~Ad~Fy~~f--NGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD---GTPNRYMVLIKFRDQESADEFYEEF--NGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC---CCCceEEEEEEECCHHHHHHHHHHh--CCCccCC
Confidence 444455556666677776666664 5778999987 2225678899999999999999988 9999863
|
These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=21 Score=36.94 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCChHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 300 GLMVNYYARRGDMHRARQ-TFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
..-|.--...|+...|-+ ++.-+....-.|+.....+.| ....|+|+.+...+...... +.-...+...+++...+
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc
Confidence 333445556788776655 444444443345555544444 45669999999888665442 33356678888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
.|++++|...-+-|....++ +...........-..|-++++...|+++...+
T Consensus 370 l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999988888876655 44444333344456678899999999888765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.04 E-value=2.1 Score=45.25 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=86.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
..|+++.|..++..+. ....+.+++.+.++|-.++|+++- +|.. .-.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHH
Confidence 3455555555443332 223455666666677666665541 1211 12244556777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004006 493 VSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH 572 (779)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 572 (779)
+..+.. +..-|..|.++..+.+++..|.+.|.+... |..|+-++...|+-+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 665432 556677777777777777777777766532 45566666666766655555555555543
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMM 602 (779)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 602 (779)
. +....+|...|+++++.+++..-
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHhc
Confidence 3 23333566677777777666543
|
|
| >PF15023 DUF4523: Protein of unknown function (DUF4523) | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.7 Score=38.53 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=51.0
Q ss_pred eEEeccCCCcCCh----HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 153 KIFVGNLPNWIKK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 153 ~~~v~~l~~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+|.|.=|..++.. ..+....+.||+|.+|... | +.-|.|.|.+..+|=+|+.++ +...-|..+.+
T Consensus 88 TIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------G--rqsavVvF~d~~SAC~Av~Af---~s~~pgtm~qC 156 (166)
T PF15023_consen 88 TIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------G--RQSAVVVFKDITSACKAVSAF---QSRAPGTMFQC 156 (166)
T ss_pred eEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------C--CceEEEEehhhHHHHHHHHhh---cCCCCCceEEe
Confidence 7777755544433 3445667889999999765 3 457999999999999999997 45667788888
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 774
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.76 E-value=3.1 Score=40.43 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN-----EGLELDVFTYEA 686 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 686 (779)
.++..++..+...++++.+...+++++... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455566666667777777777777776654 45666677777777777777777777766654 355665555544
Q ss_pred HHHH
Q 004006 687 LLKA 690 (779)
Q Consensus 687 l~~~ 690 (779)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.76 E-value=3.5 Score=43.69 Aligned_cols=150 Identities=17% Similarity=0.109 Sum_probs=92.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
-.|+++.|..++..+. ....+.+++.+.++|..++|+++- +|..- -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 4566666665544443 234556777777777777776542 22221 1223346677777776
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
+..+.. +..-|..|..+..+.+++..|.++|.+... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 655432 556688888888888888888888777654 34566677777777665555555555543
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
. | ....+|...|+++++.+++..-
T Consensus 724 ~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 2 2 2234566778888888877544
|
|
| >PF15449 Retinal: Retinal protein | Back alignment and domain information |
|---|
Probab=90.66 E-value=8.6 Score=43.79 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=5.2
Q ss_pred ccccceEEec
Q 004006 148 FRQEGKIFVG 157 (779)
Q Consensus 148 ~~~~~~~~v~ 157 (779)
..+.+.||.-
T Consensus 1139 ~~Nt~SIFCP 1148 (1287)
T PF15449_consen 1139 SGNTCSIFCP 1148 (1287)
T ss_pred cCCccceecc
Confidence 3445566654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=19 Score=35.66 Aligned_cols=138 Identities=16% Similarity=0.108 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004006 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG-DTGKAFEYFTKLRNEGLELDVFTYEALL 688 (779)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 688 (779)
+..+-...+.++.+.++ .+++..+-.+.+. +|...-...+.++.+.+ +...+...+..++. ..+..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 45555566667766665 5666666666642 34444444444555443 23456666666663 34666667777
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+..+.+. .+|..+....+.+|.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 78888777 45555555555532 2 234677788888885 688888888763 3577777777777753
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=20 Score=35.52 Aligned_cols=82 Identities=5% Similarity=-0.086 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh----HHHHHHHHHHHHcCCCCCHhH
Q 004006 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM----EEALSCVRKMKEEGIEMSLVT 368 (779)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~ 368 (779)
.++.......+..+...|. .++...+..+... .|...-...+.++...|+. .++..++..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3455555556666666664 3444444444432 2555555666666666653 4566666655332 245555
Q ss_pred HHHHHHHHHccC
Q 004006 369 YSIIVGGFAKMG 380 (779)
Q Consensus 369 ~~~l~~~~~~~g 380 (779)
....+.++...+
T Consensus 108 R~~A~~aLG~~~ 119 (280)
T PRK09687 108 RASAINATGHRC 119 (280)
T ss_pred HHHHHHHHhccc
Confidence 555555555443
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=90.34 E-value=13 Score=41.42 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENM 322 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (779)
+.-|. .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56676 688888899999999998544
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=90.34 E-value=24 Score=36.40 Aligned_cols=158 Identities=9% Similarity=0.081 Sum_probs=85.2
Q ss_pred hhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004006 259 WHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLI 338 (779)
Q Consensus 259 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 338 (779)
|...+..+...|..++..- +-+.++....+.+- ...++--+...+.+.|+...|-+++++++-. -..++....
T Consensus 6 hs~~Y~~~q~~F~~~v~~~--Dp~~l~~ll~~~Py-HidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F 78 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSH--DPNALINLLQKNPY-HIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSF 78 (360)
T ss_pred CCHHHHHHHHHHHHHHHcc--CHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 4455678888888887642 23455544433222 4556666778899999999999999887632 001111111
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hc
Q 004006 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI---IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC-QT 414 (779)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 414 (779)
..+.....-..+ ++.-. ..-|-..|.. -+..+.+.|.+..|+++.+.+...++.-|......+|..|+ +.
T Consensus 79 ~~~~~~~~~g~~-----rL~~~-~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs 152 (360)
T PF04910_consen 79 SPFRSNLTSGNC-----RLDYR-RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS 152 (360)
T ss_pred hhhhcccccCcc-----ccCCc-cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc
Confidence 110000000000 00000 0112222222 23445667777777777777777766656666666666654 56
Q ss_pred CChHHHHHHHHHHHH
Q 004006 415 RNMERAEALVRDMEE 429 (779)
Q Consensus 415 g~~~~A~~~~~~~~~ 429 (779)
++++.-+++++....
T Consensus 153 ~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 153 RQYQWLIDFSESPLA 167 (360)
T ss_pred CCHHHHHHHHHhHhh
Confidence 666666666665544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0162 consensus Myosin class I heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.34 E-value=2.5 Score=45.51 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 12 FPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLS 91 (779)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~ 91 (779)
+.......++-..|++.+........|...-.|-|...+.......++|+....-....+.+.+++.+......+....+
T Consensus 942 ~g~~~~~~~~r~~~~~~~~~~~~~~~paA~~~p~p~~~~~~~~~~~~~p~~~s~~~s~~~~~~p~s~p~~~~~~~~~~~~ 1021 (1106)
T KOG0162|consen 942 SGRDAASTPTRRAPQNKQAYGQNGVSPAAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQPSARPSSKPTVFTKVPDAGAS 1021 (1106)
T ss_pred CCcccccCCCCCCCCCcccccCCCCCccccCCCCCCCCCCCccccCCCCCCcccccccccccCCCCCCccccccCcccCc
Q ss_pred ccccCCCCCCCCCCC---CCCCCCCCCCCCC
Q 004006 92 AKLRLSSKLSPPPPP---PPPPPPAEQLQEP 119 (779)
Q Consensus 92 ~~~~~~~~~~~~ppp---~~~~~p~~~~~~~ 119 (779)
.....+..+.-+||+ |+||||...+-.|
T Consensus 1022 ~~~~~~s~~q~~pP~~g~P~PpPp~~~~k~p 1052 (1106)
T KOG0162|consen 1022 GNGRKPSGPQRPPPPAGRPKPPPPAKPPKNP 1052 (1106)
T ss_pred ccccCCCCCCCCCCCCCCCCccCCCCCCCCc
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.34 E-value=22 Score=36.14 Aligned_cols=81 Identities=7% Similarity=-0.070 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---cCCHHHHHHH
Q 004006 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK---MGNAEAADHW 388 (779)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 388 (779)
.+.-+.+++++++.+. -+...+..+++.+.+..+.++..+.+++++..... +...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3566788899888753 46777888889999888999999999999887432 67778777766543 2346677777
Q ss_pred HHHHHH
Q 004006 389 FEEAKE 394 (779)
Q Consensus 389 ~~~~~~ 394 (779)
|.+...
T Consensus 125 y~~~l~ 130 (321)
T PF08424_consen 125 YEKCLR 130 (321)
T ss_pred HHHHHH
Confidence 766654
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.27 E-value=5.9 Score=40.90 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=60.2
Q ss_pred HHhcCCHHHHHHHHHHHH---HCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC-----
Q 004006 586 FARAGEMKRALEIFDMMR---RSGCIP-----TVHTFNALILGLVEKRQMEKAIEILDEMTL-------AGISPN----- 645 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~---~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------~~~~~~----- 645 (779)
+.-.|++.+|.+++...- ..|... .-..||.|...+.+.+.+.-+..+|.+.+. .|+++.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 444566666666554331 112111 122346666666666666666666555442 233221
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 004006 646 ------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKS 694 (779)
Q Consensus 646 ------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (779)
..+||.=+ .|...|+.-.|.+.|.+.... +.-+...|..|..+|...
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23444333 566778888888888887765 456777888888887643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.19 E-value=12 Score=32.80 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (779)
......++..-.+.++.+++..+++.+.-..+. ....-..-+..+...|++.+|+++|+++.+. .+....-..|+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~ 86 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 446 YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
|.....-..=..+-+++.+.+..++.. .++..+....+...|..
T Consensus 87 CL~~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 87 CLYALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.09 E-value=16 Score=34.06 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004006 519 LKDWANVFAVFEDVMRD 535 (779)
Q Consensus 519 ~~~~~~a~~~~~~~~~~ 535 (779)
.+++.+|+.+|+++.+.
T Consensus 167 leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
|
|
| >PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=89.95 E-value=1.7 Score=30.99 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=42.0
Q ss_pred ceEEeccCCCcCChHHHHHHHhcc---CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQF---GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
.+|+|.|+.. .+.++++.+|..| .....|..+-| .-+=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD--------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD--------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC--------CcEEEEECCHHHHHHHHHcC
Confidence 3899999854 6788999999988 13457888877 23458899999999998764
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.91 E-value=6.1 Score=40.83 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 718 VYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
+||+ +-.|...|+...|.+.|.+.... +.-+...|-.|..+|.+.
T Consensus 338 lYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 338 LYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 4454 45778889999999999888875 677888999999998875
|
|
| >KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.52 Score=47.69 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=58.2
Q ss_pred ceEEeccCCCcC-ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPNWI-KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+.|-+--.++.. +..+|...|.+||.|..|.+--. ---|.|+|.+..+|..|... .|..|++|.|+|-|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-------~~~a~vTF~t~aeag~a~~s---~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-------SLHAVVTFKTRAEAGEAYAS---HGAVLNNRFIKLFW 442 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-------hhhheeeeeccccccchhcc---ccceecCceeEEEE
Confidence 344444445544 44799999999999999876321 45789999999999766543 89999999999999
Q ss_pred cCCcchhhH
Q 004006 231 DDGRRLKNK 239 (779)
Q Consensus 231 ~~~~~~~~~ 239 (779)
-++..+.+.
T Consensus 443 hnps~~tn~ 451 (526)
T KOG2135|consen 443 HNPSPVTNI 451 (526)
T ss_pred ecCCcccCc
Confidence 877654443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.63 E-value=26 Score=35.65 Aligned_cols=60 Identities=7% Similarity=0.006 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (779)
.-+.+++++++.++ -+...+..++..+.+..+.++..+.++++.... +.+...|...++.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 34445555555433 245555555555555555555555555555542 2244444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.94 Score=27.64 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 717 FVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 717 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|..++.+|...|++++|++.++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3456666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.39 E-value=3.8 Score=36.49 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKS----------GRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (779)
++.|.+.++.....+ +.|...++.-..++... ..+++|..-|++.+..+ +.....+.+++.+|...+.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHh
Q ss_pred -----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 732 -----------VWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 732 -----------~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
+++|.+.|++..+ .+|+..+|+.-+..+.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHTH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhh
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0162 consensus Myosin class I heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.22 E-value=7.4 Score=42.17 Aligned_cols=127 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 2 DNILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTH 81 (779)
Q Consensus 2 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~ 81 (779)
+|...+|-|.-.-+.-+..-.+.-.....++-..+++++.-.-....|+...+|.+.+.|.......|++........+.
T Consensus 921 ~GlP~~Skps~k~p~~~tg~s~g~~~~~~~~r~~~~~~~~~~~~~~~paA~~~p~p~~~~~~~~~~~~~p~~~s~~~s~~ 1000 (1106)
T KOG0162|consen 921 TGLPPNSKPSRKKPRKATGYSSGRDAASTPTRRAPQNKQAYGQNGVSPAAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQ 1000 (1106)
T ss_pred CCCCCCCCcCCcCcccCCCCCCCcccccCCCCCCCCCcccccCCCCCccccCCCCCCCCCCCccccCCCCCCcccccccc
Q ss_pred CCCCCCCCCCc-----cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 82 VPSPPSHSLSA-----KLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIP 128 (779)
Q Consensus 82 ~~~p~~~~~~~-----~~~~~~~~~~~ppp~~~~~p~~~~~~~~~~~~~~~~ 128 (779)
+..-|.+.+.. ....++....+..++.+||+...+++|+....+..+
T Consensus 1001 ~~~~p~s~p~~~~~~~~~~~~~~~~~~s~~q~~pP~~g~P~PpPp~~~~k~p 1052 (1106)
T KOG0162|consen 1001 PSARPSSKPTVFTKVPDAGASGNGRKPSGPQRPPPPAGRPKPPPPAKPPKNP 1052 (1106)
T ss_pred cccCCCCCCccccccCcccCcccccCCCCCCCCCCCCCCCCccCCCCCCCCc
|
|
| >KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.81 Score=45.03 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCC--cceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN--VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~--~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.|-|.||.+.+|.+.++.+|.-.|.|.++++.....+..-. .-.|||.|.+...+..|-..- |-..++--.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLt--ntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLT--NTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhc--cceeeeeeEEEE
Q ss_pred EecCC
Q 004006 229 KLDDG 233 (779)
Q Consensus 229 ~~~~~ 233 (779)
-+...
T Consensus 85 p~~~~ 89 (479)
T KOG4676|consen 85 PYGDE 89 (479)
T ss_pred ecCCC
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.77 E-value=16 Score=32.13 Aligned_cols=118 Identities=13% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004006 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (779)
Q Consensus 649 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (779)
...++..-...++.+.+..++.-+.-.. +-....-..-...+...|+|.+|+.+|+++.+.. +....-..|+-.|..
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 004006 729 RGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGR 772 (779)
Q Consensus 729 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~ 772 (779)
..+-.+=..+-+++.+.+-.|+. ..|+.++....+...|.+
T Consensus 90 ~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.73 E-value=21 Score=33.41 Aligned_cols=234 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHH----HHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKM----KEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (779)
...|....+.|--..++..|=..|.+. .+.|-..|..+...-+.-+.+.++.++|.+.+++.++
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aie------------ 101 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIE------------ 101 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHH------------
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
+|...|++..|-....++-+. .+.+..-+..-|..|.+.+++-+..+.-...-+ .+..........++
T Consensus 102 ---Iyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK--------C~lKvA~yaa~leq 169 (288)
T KOG1586|consen 102 ---IYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANK--------CLLKVAQYAAQLEQ 169 (288)
T ss_pred ---HHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH--------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004006 487 VSKALEVSKVMKSSGIKHNMKTYSM------LINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRA 560 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 560 (779)
+.+|+++|+++....+.-+..-|.. ..-.+.-..+.-.+...+++..+..+.....-=..++.-+...-+-+..
T Consensus 170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~ 249 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDI 249 (288)
T ss_pred HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhH
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 004006 561 IHIVKEMQKERHRPTSRTFMPIIHGFAR 588 (779)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (779)
..+-+....-+-......|.+-|-.-.+
T Consensus 250 e~fte~vkefDsisrLD~W~ttiLlkiK 277 (288)
T KOG1586|consen 250 EKFTEVVKEFDSISRLDQWKTTILLKIK 277 (288)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHH
|
|
| >KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.70 E-value=1.9 Score=42.17 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 14 HTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSP 85 (779)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p 85 (779)
+.++++... ..+|....+...+..+.+|++...+++...+|.+.+|++|+.++++++.+..+...++.++|
T Consensus 148 ~gaApa~~~-~~apa~~~pk~~~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~P~~~~a~k~~v~~~~~~p 218 (457)
T KOG0559|consen 148 PGAAPAKGG-ASAPAKAEPKTAPAAAAPPKPSSKPPPKEAAPVAESPPAPSSPEPVPASAKKPSVAQPKPPP 218 (457)
T ss_pred CCCCCcccc-ccCCCccCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCccccCccccCCCCCc
|
|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.63 E-value=7 Score=43.22 Aligned_cols=124 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 10 PHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHS 89 (779)
Q Consensus 10 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~ 89 (779)
.|+-.+++...+....++++.+..++...+-+|++..+..+..+++-++..+.-......+..+..+.+-+....|+|.+
T Consensus 20 ~~~~~~p~~~~~~~g~~~p~~~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Sy~~~~~p~p~~ 99 (887)
T KOG1985|consen 20 QPALFPPASLTPQNGMPPPPSASMPPPAGSVPPASVTPAQPQIQQQIPPATPSMEGNLQLPNAPVGPPSYQQLQAPTPAQ 99 (887)
T ss_pred CcccCCCccCCccCCCCCCCcCCCCCCCCCCCCCCcCccccccCCCCCCcccccCcCCCCCCCCCCCcchhhccCCCCcc
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 90 LSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENR 133 (779)
Q Consensus 90 ~~~~~~~~~~~~~~ppp~~~~~p~~~~~~~~~~~~~~~~~~~~~ 133 (779)
..+.....++..++++..+++.+++.....+.......++....
T Consensus 100 ~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~~~ 143 (887)
T KOG1985|consen 100 QQQQPPPPPQVGSQPPQMGPPAPPPMNALQPVDLPNQLPPGINQ 143 (887)
T ss_pred cCCCCCCCCccCCCCCCCCCCCCCcccccCccccccCCCCCccc
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.56 E-value=19 Score=32.72 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHH
Q 004006 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIM--HGYASLGDTGKAFEYFTKLRNE--GLELDVFTYEA 686 (779)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ 686 (779)
...|..++......+- +.....+++...+-....-.+..|- ..+...+++++|...++..+.. .-.....+-..
T Consensus 54 S~~Y~~~i~~~~ak~~--~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQAKKP--KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHhcCCc--hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSF 757 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 757 (779)
|.......|.+++|+..++...+.+ -.......-++++...|+-++|..-|++.++.+-.+...-+.-+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqm 200 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQM 200 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHHh
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.48 E-value=1.2 Score=27.05 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 716 TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (779)
Q Consensus 716 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (779)
...|..++.+|...|++++|++.+++.++ +.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.44 E-value=24 Score=33.89 Aligned_cols=295 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004006 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYH-------MMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLIN 479 (779)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 479 (779)
+.+-..+.+++++|+..+.++...|+..+..+.+ .+...|...|++...-+......+.-..-...--..++.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 004006 480 LYTKI-----GKVSKALEVSKVMKSSGIKHNMKTYSM-----LINGFLKLKDWANVFAVFEDVMRD----GLKPDVVLYN 545 (779)
Q Consensus 480 ~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~ 545 (779)
.+... ..++.-+.+.....+...+-+...... ++.++.+.|.+.+|+.+...+... +-+++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHHH-HHHhCCCHHHHHHHHHHHHHcC----CCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 546 NIIR-AFCGMGNMDRAIHIVKEMQKER----HRPTSRTFMPIIHG--FARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (779)
Q Consensus 546 ~l~~-~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 618 (779)
.+=. +|....+..++..-+...+... ..|-...-.-|+.+ .|...++..|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E-------------- 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE-------------- 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh--------------
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--C
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG--R 696 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 696 (779)
+|.....-.+|...++.|+-.. .|++.-...+..-.+...++.....++. ....+..+|.... +
T Consensus 235 -gft~l~~d~kAc~sLkYmlLSk---------IMlN~~~evk~vl~~K~t~~~y~~r~I~----am~avaea~~NRsL~d 300 (421)
T COG5159 235 -GFTLLKMDVKACVSLKYMLLSK---------IMLNRREEVKAVLRNKNTLKHYDDRMIR----AMLAVAEAFGNRSLKD 300 (421)
T ss_pred -ccccccchHHHHHHHHHHHHHH---------HHHhhHHHHHHHHccchhHhhhhhhhHH----HHHHHHHHhCCCcHhh
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004006 697 MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (779)
Q Consensus 697 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (779)
++.|+.-++.-...+ +.-..+++.|-+.+...+
T Consensus 301 f~~aL~qY~~el~~D-~~iRsHl~~LYD~LLe~N 333 (421)
T COG5159 301 FSDALAQYSDELHQD-SFIRSHLQYLYDVLLEKN 333 (421)
T ss_pred HHHHHHHhhHHhccC-HHHHHHHHHHHHHHHHhh
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.2 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
..+|..++.+|...|++++|+..|+++++..+.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.13 E-value=36 Score=35.51 Aligned_cols=433 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhh-----HHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCHhHH
Q 004006 302 MVNYYARRG--DMHRARQTFENMRARGIEPTLHV-----YTNLIHAYAVG-----RDMEEALSCVRKMKEEGIEMSLVTY 369 (779)
Q Consensus 302 li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~ 369 (779)
+...+-..| +...++++++-.....+.--+.+ ...++-.|.++ ...+.|+.+.+.|... .+.-..++
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f-ydvKf~a~ 91 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF-YDVKFQAA 91 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH-HhhhhHHH
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 370 SIIVGGFAKMG-NAEAADHWFEEAKERH---ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (779)
Q Consensus 370 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (779)
+.|..+|+... .+..|..++.+.++.. +.........|+..+.-..++.-|.+++.--.+.- .+-...|..++..
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ft 170 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRMLFT 170 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHHHH
Q ss_pred HHh---------cCCHHHHHHHHHHHHHCCCCCC--------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--
Q 004006 446 YTI---------IGNEEKCLIVFERLKECGFSPS--------IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM-- 506 (779)
Q Consensus 446 ~~~---------~g~~~~a~~~~~~~~~~g~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 506 (779)
+.. ..+.+++......+.+. ..+| ++..+.-+..|.-.|+...+...++++...--.-..
T Consensus 171 ls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 171 LSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Q ss_pred -------------------------------HHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCC----------HHH
Q 004006 507 -------------------------------KTYSMLINGFLKL--KDWANVFAVFEDVMRDGLKPD----------VVL 543 (779)
Q Consensus 507 -------------------------------~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~----------~~~ 543 (779)
.....+..+|.+. +-.|+++...++..+. | ..+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~----d~~srilsm~km~~ 325 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQA----DLMSRILSMFKMIL 325 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccc----cchhHHHHHHHHHH
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc---------ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS---------RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (779)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 614 (779)
...++.+-.-.|++.+|++-+.+|.+.-..... .....+..-+...+.++.|+.-|....+.--..|...+
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCH
Q 004006 615 --NALILGLVEKRQMEKAIEILDEMTLAGISPNE------HTYTTIMHGYASLGDTGKAFEYFTKLRNE-----GLELDV 681 (779)
Q Consensus 615 --~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~ 681 (779)
..+...|.+.++.+.-.++++.+--.+..+.. ..+-.-.--....+++.+|..++.+.++. -.....
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHH
Q 004006 682 FTYEALLKACCKSGRMQSALAVTKEMSAQ-----KIPRNTFVYNILIDGWARRGD--VWEAADLMQQ 741 (779)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 741 (779)
-.+..|...+...|+-.++..+..-.... +++.-.+....+-+.|...|+ .++..+.+..
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.00 E-value=6.3 Score=38.28 Aligned_cols=142 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHH----------HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCC
Q 004006 511 MLINGFLKLKDWANVFAVF----------EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER-----HRPT 575 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~----------~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~ 575 (779)
.|..+|.....|+.-.... +.-...|......+...++..-....+.+.++.++-+++... ...+
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~ 103 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT 103 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (779)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 655 (779)
..+|..++.-| +..+++.++..-+..|+-+|.++++.+|+.+.+.+++.+|..+.-.|+....-.|..+-..-+..
T Consensus 104 ~~~~irlllky----~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~nell~~L~Lyv 179 (418)
T KOG4570|consen 104 IHTWIRLLLKY----DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEAFENELLQLLSLYV 179 (418)
T ss_pred HHHHHHHHHcc----ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred H
Q 004006 656 Y 656 (779)
Q Consensus 656 ~ 656 (779)
|
T Consensus 180 ~ 180 (418)
T KOG4570|consen 180 L 180 (418)
T ss_pred H
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.78 E-value=20 Score=32.01 Aligned_cols=136 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
++.+..+.+.++.++...+..+++.+.+.|+ ...+.++.+.++-+|.......+ +...+.+..+.++=-+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~----~~~L~qllq~~Vi~DSk~lA~~L--Ls~~~~~~~~~Ql~lDMLk- 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQ----FSQLHQLLQYHVIPDSKPLACQL--LSLGNQYPPAYQLGLDMLK- 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHhhcccCCcHHHHHHH--HHhHccChHHHHHHHHHHH-
Q ss_pred CCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 536 GLKPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606 (779)
Q Consensus 536 g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 606 (779)
... .+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+|+-..+.+
T Consensus 87 ----RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 ----RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.76 E-value=30 Score=34.10 Aligned_cols=181 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 004006 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALV 424 (779)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (779)
++.+....+++.+++.+..| +-..+|..+.++--...++.|.+. +..++++-.+..
T Consensus 36 ~~~~~~e~l~~~Ird~~Map-------~Ye~lce~~~i~~D~~~l~~m~~~-----------------neeki~eld~~i 91 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP-------LYEYLCESLVIKLDQDLLNSMKKA-----------------NEEKIKELDEKI 91 (393)
T ss_pred cCHHHHHHHHHHHHhcccch-------HHHHHHhhcceeccHHHHHHHHHh-----------------hHHHHHHHHHHH
Q ss_pred HHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 004006 425 RDMEEE-GIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSPSIISYGC-LINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 425 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 498 (779)
++..+. |-.--..++.....-|++.|+.+.|++.+.+..+. |.+.|+..+.. |.-.|....-..+-++..+.+.
T Consensus 92 edaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~li 171 (393)
T KOG0687|consen 92 EDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLI 171 (393)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q ss_pred HCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 499 SSGIKHNMKTYSMLINGFLKL--KDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 499 ~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
+.|...+-.---..-.+.... .++.+|-.+|-+.+..-..-....|..++.
T Consensus 172 E~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 172 EEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHH
|
|
| >KOG0226 consensus RNA-binding proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.56 E-value=2.1 Score=39.70 Aligned_cols=162 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccch
Q 004006 64 SKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQ 143 (779)
Q Consensus 64 ~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (779)
+.-+.+|.+...-......+-++..+..+..+....+..+-.-++++.................................
T Consensus 13 ~el~~pp~~n~~~p~~~ra~~~~~~s~~~l~~~~~~~~s~~~v~~~~~~~~~~~~~~~v~tav~~~s~~a~~~~Pt~l~~ 92 (290)
T KOG0226|consen 13 PELPGPPGPNMMLPPMARAPGPPLGSMAALRPPLEEPASPREVPPPSGLGLPEFESSRVKTAVGRKSAPAVWADPTLLAP 92 (290)
T ss_pred ccCCCCCCCCccCCccccCCCCccccccccCCcccCCCCccccCCCCCCCCCcchhhhhhhhccccccccccCCCccCCC
Q ss_pred hhhhccccceEEeccCCCcCChHH-H--HHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 144 EETEFRQEGKIFVGNLPNWIKKHL-V--MEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 144 ~~~~~~~~~~~~v~~l~~~~~~~~-l--~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
....+ .+|++++...+..+- | ...|+-+-.....+++++ ..+.-++++|+.|.......++-..- +++.
T Consensus 93 ~P~vf----~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~--~~Kk 164 (290)
T KOG0226|consen 93 APAVF----RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEK--EKKK 164 (290)
T ss_pred Ccccc----cccccccccccCCCCCCcchhhhccchhhhhhhhhhc--CCCccCcccccCcchhhhhhhhcccc--cccc
Q ss_pred eeceEEEEEecCC
Q 004006 221 FHGRVLTVKLDDG 233 (779)
Q Consensus 221 ~~~~~~~v~~~~~ 233 (779)
++.++|+..-...
T Consensus 165 i~~~~VR~a~gts 177 (290)
T KOG0226|consen 165 IGKPPVRLAAGTS 177 (290)
T ss_pred ccCcceeeccccc
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.5 Score=26.57 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPT 330 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 330 (779)
+..|..+...|...|++++|++.|++.++. .|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.02 E-value=4.4 Score=46.61 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred cCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 4 ILSLSAPHFP------HTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNS 77 (779)
Q Consensus 4 ~~~~~~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~ 77 (779)
+..+++|-+| +..|++.+-+-..|.-......+..++.+.=-...+.+.+.++++.+.+.+.|..|++++.+..
T Consensus 1835 ~p~s~ap~pplr~~~a~~~p~a~~rq~~vP~~~~r~~s~a~~~~~t~~~k~q~~~p~m~Ppq~~~~pqp~gpqPp~~p~p 1914 (1958)
T KOG0391|consen 1835 KPISPAPFPPLRQQQAQQQPTATTRQVQVPQIQGRAQSPAGKLTPTHLIKMQKQKPQMPPPQPAAQPQPQGPQPPQQPSP 1914 (1958)
T ss_pred CCCCCCCCCcccccccccCCCccccccccCcccccCcCCCCCCCHHHHHhhcCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 78 ATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQ 120 (779)
Q Consensus 78 ~~~~~~~p~~~~~~~~~~~~~~~~~~ppp~~~~~p~~~~~~~~ 120 (779)
.-.+...++.......-...-+.+.-+.+|+++++++.+.+++
T Consensus 1915 ~l~~v~~~rrg~lg~~rs~gd~~se~~sqpqp~p~~~~p~pp~ 1957 (1958)
T KOG0391|consen 1915 QLTTVTAPRRGALGVARSTGDPTSELQSQPQPQPQAPQPAPPP 1957 (1958)
T ss_pred CCCccccCCCCCccceeccCCCCccccCCCCCCCCCCCCCCCC
|
|
| >PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP) | Back alignment and domain information |
|---|
Probab=86.82 E-value=4.8 Score=37.88 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004006 14 HTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPS 87 (779)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~ 87 (779)
+..+.+.+.+.|..++.....++.++++.+++.|.+++.+.|..+..++++.|..+...+..+..+..++++.+
T Consensus 34 Pa~A~AdPaPtPt~PPtt~~aPP~p~~P~atPaP~appt~~PAdPnA~~Pp~PadPna~~pppadpnap~P~~p 107 (297)
T PF07174_consen 34 PATAQADPAPTPTAPPTTTTAPPAPPPPAATPAPTAPPTPPPADPNAPPPPPPADPNAAPPPPADPNAPPPPAP 107 (297)
T ss_pred cccccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
|
Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region |
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.61 E-value=63 Score=36.65 Aligned_cols=310 Identities=9% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
..|...|+|++|+++-..-.+. -..++..-+..|...+++..|-+++.++.+. +..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~--------FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAETLSS--------FEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--------HHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH-------------------HHHHHCCCCCCHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVS-------------------KVMKSSGIKHNMKTYSMLIN 514 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-------------------~~m~~~~~~~~~~~~~~ll~ 514 (779)
+++.|-.=+-..+.+...+-..++....-.-.+++--++- +.+.......+...+.+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 004006 515 GFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKR 594 (779)
Q Consensus 515 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 594 (779)
.+...|+.+++..+-.-|.. |..++.-+.+.+++++|++++ ......-+.--|+-.--...
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL----------~~~~~~el~yk~ap~Li~~~ 573 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVL----------LNQRNPELFYKYAPELITHS 573 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH----------HhccchhhHHHhhhHHHhcC
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 595 ALEIFDMMRRSGCIPTVHTFNALILGLVEK---RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTK 671 (779)
Q Consensus 595 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 671 (779)
.....+.....+-.........++..+.+. .....+..+++-....-..-+...+|.++..|++..+-+....+-..
T Consensus 574 p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~ 653 (911)
T KOG2034|consen 574 PKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEII 653 (911)
T ss_pred cHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHH
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhCCCCCCHH
Q 004006 672 LRNEGLELDVFTYEALLKACCKSG------RMQSALAVTKEMSAQKIPRNTF 717 (779)
Q Consensus 672 ~~~~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~ 717 (779)
....+. ..+-....+..|.+.+ .+..++.++.++++.-+..|..
T Consensus 654 ~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d~d 703 (911)
T KOG2034|consen 654 KFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFDID 703 (911)
T ss_pred hhcccc--ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcCHH
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.58 E-value=61 Score=36.43 Aligned_cols=361 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH-------HHHHHHHHHHHcCC--CCChhhHHH
Q 004006 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE-------AADHWFEEAKERHA--TLNAIIYGN 406 (779)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~--~~~~~~~~~ 406 (779)
.+|-.|.++|++++|.++..+.... .......+...+..|+...+-. +...-|++...... .|-..+.+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q ss_pred HHHHHHhcCC--------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004006 407 IIYAQCQTRN--------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478 (779)
Q Consensus 407 l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 478 (779)
++..|--..+ .+.-+=+-=.+...+...+... ...-.+++..+.+.+.-+.-+.+ ....-...
T Consensus 195 ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~--------~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~Yf 265 (613)
T PF04097_consen 195 ILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSA--------YERYTLEDLQKLILKYGESHFNA-GSNPLLYF 265 (613)
T ss_dssp HHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSS--------S----HHHHHHHHHHH-GGGCTT-------HH
T ss_pred HHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccc--------cccccHHHHHHHHHHhchhhccc-chhHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 004006 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMD 558 (779)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 558 (779)
..+.-.|+++.|.+.+-. ......+...+.+.+..|.-.+-.+....-+-.....+..+ .-+..||..|.+.=...
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~--ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP--LNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC--cCHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHcCCCCC----cccHHHHHHHHHhcCCHHHHHH------------HHHHHHHCCCCCCHHHHHHHHH---
Q 004006 559 RAIHIVKEMQKERHRPT----SRTFMPIIHGFARAGEMKRALE------------IFDMMRRSGCIPTVHTFNALIL--- 619 (779)
Q Consensus 559 ~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~li~--- 619 (779)
.....++.+.-.....+ .....++-......++++.-+. +-+...-.++..+......++.
T Consensus 342 d~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A 421 (613)
T PF04097_consen 342 DPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAA 421 (613)
T ss_dssp -HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHH
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-----------HHHHH
Q 004006 620 -GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE--GLELD-----------VFTYE 685 (779)
Q Consensus 620 -~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~-----------~~~~~ 685 (779)
-+...|++++|+.+|.-.. +++++++++.+.+.. ..... ...-.
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~----------------------~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~ 479 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAE----------------------EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAK 479 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-----------------------HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHH
Q ss_pred HHHHHHHHcCCh-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 686 ALLKACCKSGRM-----QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 686 ~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
.++..|...+.. ......+..+.. -.-+..++..|++++|++.++++
T Consensus 480 ~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~----------L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 480 EILERYKSNPHISSKVSRKNRETFQLLLD----------LAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHTTSHHHHTTS-HHHHHHHHHHHH----------HHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHhCcchHhhccHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHhC
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons | Back alignment and domain information |
|---|
Probab=86.36 E-value=1.3 Score=40.01 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhc-cCCe---eEEEEecCCCCCCCC-cceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQ-FGPI---KNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~-~g~i---~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
.+.+|.|.+||+..|++++.+.++. +|.. ..+.-..+....+.+ .+-|+|.|.+.+++..-...+ +|+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~--~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF--DGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC--TTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc--CCcEE
|
Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 779 | ||||
| 2fy1_A | 116 | A Dual Mode Of Rna Recognition By The Rbmy Protein | 2e-06 | ||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 5e-04 |
| >pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein Length = 116 | Back alignment and structure |
|
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.3 bits (209), Expect = 5e-17
Identities = 29/285 (10%), Positives = 79/285 (27%), Gaps = 5/285 (1%)
Query: 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549
A + + + + + L+ A + L +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 550 AFCGMGNMDRAIHIV---KEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606
+ A H++ +++R T + ++ G+AR G K + + M++ +G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 607 CIPTVHTFNALILGLVEKRQMEKAIE-ILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665
P + ++ A + + + Q IE L++M+ G+ ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725
+ LL+ S + + + ++ +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ-LHMELAS 314
Query: 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRN 770
V + +++K C+ + +
Sbjct: 315 RVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNR 359
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.8 bits (169), Expect = 3e-12
Identities = 18/177 (10%), Positives = 51/177 (28%), Gaps = 4/177 (2%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQT---FENMRARGIEPTLHVYTNLIHAYAVGRDMEE 349
++ + A R + TL +Y ++ +A +E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 350 ALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAADHWFEEAKERHATLNAIIYGNII 408
+ + +K+ G+ L++Y+ + + A + E+ + L A+ ++
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465
+ + ++ + P ++ + LK
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.4 bits (160), Expect = 3e-11
Identities = 15/237 (6%), Positives = 68/237 (28%), Gaps = 4/237 (1%)
Query: 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPID 437
++ + + A + ++ + ++ +++ +A + +
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 438 IYHMMMDGYTIIGNEEKCLIVFERLKEC---GFSPSIISYGCLINLYTKIGKVSKALEVS 494
+ + ++ Y ++ + + G + + V
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 495 KVMKSSGIKHNMKTYSMLINGFLKL-KDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG 553
++K +G+ ++ +Y+ + + +D + E + ++GLK + ++
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 554 MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610
+ + P ++ ++ ++ C+
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 3e-09
Identities = 23/317 (7%), Positives = 77/317 (24%), Gaps = 13/317 (4%)
Query: 292 KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEAL 351
+ + + R A + R P L+ ++
Sbjct: 53 QSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQ 112
Query: 352 SCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW---FEEAKERHATLNAIIYGNII 408
+ + + + A H +++ L +Y ++
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL-IVFERLKECGF 467
+ + ++ +++ G+ + Y + + + E++ + G
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFA 527
+ L++ + + +V S L+ +
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
Query: 528 VFEDVMRDGLKPDVVLY---------NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRT 578
+ + + L+ ++ + + A +K ++ + + R
Sbjct: 293 LHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRA 352
Query: 579 FMPIIHGFARAGEMKRA 595
+ R R
Sbjct: 353 LRETKNRLEREVYEGRF 369
|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 2e-16
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++F+G +P K+ ++E + + +VI+ + KN GF FV Y+ A A
Sbjct: 10 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 69
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNG 252
+ + ++ G + V + +V ++G
Sbjct: 70 RKLMPGRIQLWGHQIAVDWAEPEI-DVDEDVMETVSGPSSG 109
|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 1e-15
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 116 LQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQF 175
P+S + E S + + ++VG L + ++ F F
Sbjct: 28 SNLPESVAYTCVNCTERHVDGGSGGSGGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPF 87
Query: 176 GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G I ++ + Y EK+ GF FV ++ +A+ + E GR + V
Sbjct: 88 GDITDIQIPLDYET-EKHRGFAFVEFELAEDAAAAIDN--MNESELFGRTIRV 137
|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-15
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
+S + + + KI V N+P + + E F FG +K V L K + GFGFV
Sbjct: 4 GSSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFV 63
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAG 249
+ K A A+ +GR L + A+ +G
Sbjct: 64 DFITKQDAKKAFNALC-HSTHLYGRRLVL---------EWADSEVTVQSG 103
|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 8e-15
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
SS ++ + + +FVGNL +++ ++ E F Q GP+ V + K K F
Sbjct: 2 SSGSSGMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPK--SF 59
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
GFV + P + A+ +G+ +GR + V
Sbjct: 60 GFVCFKHPESVSYAIA--LLNGIRLYGRPINV 89
|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-14
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
K+F+GNLP + + F Q+G + +IK +GFV + A +
Sbjct: 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---------NYGFVHIEDKTAAE 56
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A++ + HG + V+ +
Sbjct: 57 DAIRN--LHHYKLHGVNINVEASKNKS 81
|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 3e-14
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ ++VG L + ++ F FG I ++ + Y EK+ GF FV ++
Sbjct: 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET-EKHRGFAFVEFELAEDAA 63
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
+A+ + E GR + V N A+
Sbjct: 64 AAIDN--MNESELFGRTIRV---------NLAK 85
|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-14
Identities = 27/138 (19%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 127 IPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG 186
+ ++ R ++E ++ ++VGNL + + + E F + G IK +I+
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 187 YNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARW 246
+ GF FV Y A ++AM+ + +G R++ D G + ++
Sbjct: 75 KMK-KTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRTDWDAGFK------EGRQY 125
Query: 247 VAGNNGEEFRSTWHKERE 264
G +G + R + ++ +
Sbjct: 126 GRGRSGGQVRDEYRQDYD 143
|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-14
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVGN+ + F + G + ++K + FV + A K+A+
Sbjct: 11 KIFVGNVSAACTSQELRSLFERRGRVIECDVVK---------DYAFVHMEKEADAKAAIA 61
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKN 238
+G E G+ + V+L + K+
Sbjct: 62 Q--LNGKEVKGKRINVELSTKGQKKS 85
|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 5e-14
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ +I+VGNLP I+ + + F ++G I+++ L F FV ++ P +
Sbjct: 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG----GPPFAFVEFEDPRDAE 75
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A+ DG ++ G L V+ R
Sbjct: 76 DAVYG--RDGYDYDGYRLRVEFPRSGR 100
|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 5e-14
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ K+ VGN+ + F ++GP+ ++K + FV +
Sbjct: 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---------DYAFVHMERAEDAV 58
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A++ D EF G+ + V+L R
Sbjct: 59 EAIRG--LDNTEFQGKRMHVQLSTSRL 83
|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-14
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-----IKGYNNFE- 191
S +S + E I+V L + + + +FF+Q G +K I Y + E
Sbjct: 2 SSGSSGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET 61
Query: 192 -KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGN 250
K G V Y+ P K+A++ FDG +F G L V + A + +G
Sbjct: 62 GKPKGDATVSYEDPPTAKAAVEW--FDGKDFQGSKLKV---------SLARKKPPMNSGP 110
Query: 251 NG 252
+
Sbjct: 111 SS 112
|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 9e-14
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S +E Q+ ++VG L + + L+ E F Q GP+ N + K ++ G+G
Sbjct: 2 SSGSSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT-GQHQGYG 60
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
FV + A+K D ++ +G+ + V
Sbjct: 61 FVEFLSEEDADYAIKI--MDMIKLYGKPIRVNKASAHNKNLSGP 102
|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-13
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 130 AENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN 189
+ S +TS E+ K+F+ LP K + E + G +K++ L+
Sbjct: 2 SSGSSGVFRYSTSLEKH------KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAG 55
Query: 190 FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
K G +V Y+ + A+ DG+ ++ V
Sbjct: 56 KPK--GLAYVEYENESQASQAVMK--MDGMTIKENIIKV 90
|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 139 LATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK-----NVILIKGYNNFE-- 191
+ IFV L + V ++F+Q G IK +I Y + E
Sbjct: 1 MGHHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG 60
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
K G V +D P + K+A+ FDG EF G + V
Sbjct: 61 KLKGEATVSFDDPPSAKAAIDW--FDGKEFSGNPIKV 95
|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-13
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
+S + ++VG L + ++ F FG I ++ + Y EK+ GF FV
Sbjct: 1 GSSGSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET-EKHRGFAFV 59
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
++ +A+ + E GR + V
Sbjct: 60 EFELAEDAAAAIDN--MNESELFGRTIRV 86
|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-13
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+ +G L + K +ME F +G IK + + + + G+ +V ++ P + A+K
Sbjct: 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65
Query: 213 AVEFDGVEFHGRVLTV 228
+ DG + G+ +T
Sbjct: 66 HM--DGGQIDGQEITA 79
|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-13
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S E F Q ++FVGNLP I + + + F ++G V + K +K GFG
Sbjct: 2 SSGSSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DK--GFG 54
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
F+ + + A E D + G+ L V
Sbjct: 55 FIRLETRTLAEIAKV--ELDNMPLRGKQLRV 83
|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 4e-13
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 18/115 (15%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-----IKGYNNFEKNV--GFG 197
E + IFV L + V ++F+Q G IK I Y + E G
Sbjct: 1 EQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEA 60
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNG 252
V +D P + K+A+ FDG EF G + V + A RA + G
Sbjct: 61 TVSFDDPPSAKAAIDW--FDGKEFSGNPIKV---------SFATRRADFNRGGGN 104
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 4e-13
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG 203
E +E +F+GNL + + ++ ++ N FG+V ++
Sbjct: 6 EGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG--TNRKFGYVDFES 63
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
KA+E G++ G + ++ GR K
Sbjct: 64 AED---LEKALELTGLKVFGNEIKLEKPKGRDSKKVRA 98
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
++ + R + NL I + + E F I+ V + K+ G ++
Sbjct: 88 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYI 141
Query: 200 IYDGPAAEKSAMKAVE-FDGVEFHGRVLTVKL 230
+ A A K +E G E GR +++
Sbjct: 142 EFKSEA---DAEKNLEEKQGAEIDGRSVSLYY 170
|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-13
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K++VGNL K + F +GP++ V + + GF FV ++ P + A++
Sbjct: 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP------GFAFVEFEDPRDAEDAVR 55
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
DG G + V+L G
Sbjct: 56 G--LDGKVICGSRVRVELSTGMP 76
|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 5e-13
Identities = 13/89 (14%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++ L + +++ + + R++G ++ V ++ K++G V++ + A +
Sbjct: 8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT-RKHLGLARVLFTST---RGAKE 63
Query: 213 AVE-FDGVEFHGRVLTVKLDDGRRLKNKA 240
V+ G ++ +LD + + K
Sbjct: 64 TVKNLHLTSVMGNIIHAQLDIKGQQRMKY 92
|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Length = 96 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 6e-13
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 143 QEETEFRQEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
E + ++F+GNLP + K + F +G I + + FGF+ +
Sbjct: 2 TEMHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN---------AFGFIQF 52
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
D P + + A++ G+ L +++
Sbjct: 53 DNPQSVRDAIE--CESQEMNFGKKLILEVSSSNA 84
|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 7e-13
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 17/121 (14%)
Query: 112 PAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEF 171
A +Q S+ A + S EE + + ++VGN+ +
Sbjct: 2 IAPCMQTTHSK-----MTAGAYTEGPPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAH 56
Query: 172 FRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227
F G I + ++ G G+ ++ + + AV D F GR +
Sbjct: 57 FSSCGSINRITILCDKFSG-----HPKGYAYIEFAERNSVD---AAVAMDETVFRGRTIK 108
Query: 228 V 228
V
Sbjct: 109 V 109
|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 7e-13
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 9/142 (6%)
Query: 95 RLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKI 154
R++ P P P S+ PD S E E K+
Sbjct: 35 RVNRGGGPRRNRPAIARGGRNRPAPYSRPKPL-PDKWQHDLFDSGCGGGEGVE--TGAKL 91
Query: 155 FVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214
V NL + + E F +FG +K + Y+ +++G V ++ A A+KA+
Sbjct: 92 LVSNLDFGVSDADIQELFAEFGTLKKAAVD--YDRSGRSLGTADVHFERRA---DALKAM 146
Query: 215 -EFDGVEFHGRVLTVKLDDGRR 235
++ GV GR + ++L +
Sbjct: 147 KQYKGVPLDGRPMDIQLVASQI 168
|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Length = 110 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 8e-13
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+S T++ + ++F+GNL +KK V F ++G + + K
Sbjct: 11 KLQASNVTNKNDP-KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHK------- 62
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
G+ FV Y ++A+ +G G+ L + + +
Sbjct: 63 --GYAFVQYSNERHARAAVLG--ENGRVLAGQTLDINMAGEPK 101
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 9e-13
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K++VGNL N K + F +GP+++V + + GF FV ++ P A++
Sbjct: 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP------GFAFVEFEDPRDAADAVR 128
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
E DG G + V+L +G +
Sbjct: 129 --ELDGRTLCGCRVRVELSNGEK 149
|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-12
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S R +FV NL + + E F G + +++ + + G G
Sbjct: 2 SSGSSGALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSR--GIG 59
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231
V ++ A+ F+G R + VK+D
Sbjct: 60 TVTFEQSIEAVQAIS--MFNGQLLFDRPMHVKMD 91
|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S ++ + +F+ NL ++ + E +QFG +K V ++ + E + G
Sbjct: 2 SSGSSGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT-EHSKGCA 60
Query: 198 FVIYDGPAAEKSAMKA----VEFDGVEFHGRVLTVKL 230
F + A + + A E G++ GR L V L
Sbjct: 61 FAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDL 97
|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Length = 139 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-12
Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 17/131 (12%)
Query: 100 LSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNL 159
+S P P + Q Q Q + + +Q E + V +
Sbjct: 1 MSQIPLVSQYDPYGQTAQLQQLQ----------QQQQQHIPPTQMNPEPDVLRNLMVNYI 50
Query: 160 PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKSAMKAVEFD 217
P + + + + F ++GPI++V ++ + E G+GFV + ++ + A+ +
Sbjct: 51 PTTVDEVQLRQLFERYGPIESVKIVC---DRETRQSRGYGFVKFQSGSSAQQAIAG--LN 105
Query: 218 GVEFHGRVLTV 228
G + L V
Sbjct: 106 GFNILNKRLKV 116
|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S ++ V N+P + + + F QFG I +V +I N + GFG
Sbjct: 2 SSGSSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---NERGSKGFG 58
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
FV ++ A A + G GR + V
Sbjct: 59 FVTFENSADADRAREK--LHGTVVEGRKIEV 87
|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 3e-12
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ +++ P + E+ G + N+ + + + K G FV++ + +
Sbjct: 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFK--GSIFVVF---DSIE 63
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
SA K VE G ++ L + D K E +
Sbjct: 64 SAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQN 100
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 3e-12
Identities = 90/624 (14%), Positives = 178/624 (28%), Gaps = 169/624 (27%)
Query: 190 FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR---W 246
FE F D KS + E D + + D A W
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHI--------IMSKD-------AVSGTLRLFW 69
Query: 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYY 306
+ EE ++F + V + IK R+ + Y
Sbjct: 70 TLLSKQEEMV-----------QKFVEEVLRINYKFLM-----SPIKTEQRQPSMMTRMYI 113
Query: 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL 366
+R ++ Q F +V R L K+++ +E+
Sbjct: 114 EQRDRLYNDNQVF---------AKYNVS----------R-----LQPYLKLRQALLELRP 149
Query: 367 VTYSIIVG--GFAK--MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN--MERA 420
+I G G K + + + + I + N+ C + +E
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-----FKIFWLNL--KNCNSPETVLEML 202
Query: 421 EALVRDME---EEGIDAPIDIYHMMMDGYT----IIGNE--EKCLIVFERLKECGFSPSI 471
+ L+ ++ D +I + ++ ++ E CL+V ++ +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----NAKA 258
Query: 472 ISY---GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAV 528
+ C I L T+ +V+ L + S H+M + ++
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM--------TLTP-DEVKSLLLK 309
Query: 529 FEDVMRDGLKPDVVLYN----NIIRAFCGMGNMDRAIHI--VKEMQKERHRPTSRTFMPI 582
+ D L +V+ N +II D K + ++ + + +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 583 IHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM---TL 639
+ E ++ + + S IPT + + +++ M +++++ +L
Sbjct: 366 L----EPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVM----VVVNKLHKYSL 416
Query: 640 AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD---VFTYEALLKACCKSGR 696
P E T +I Y E KL NE L V Y
Sbjct: 417 VEKQPKESTI-SIPSIY---------LELKVKLENE-YALHRSIVDHYNIPKTFDSDD-- 463
Query: 697 MQSALAVTKE------------MSAQKIPRNTFVYNILID-GWARR-----GDVWEA--- 735
L + + R T + +D + + W A
Sbjct: 464 ----LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 736 -ADLMQQMKQEGVQPDVHTYTSFI 758
+ +QQ+K Y +I
Sbjct: 520 ILNTLQQLK---------FYKPYI 534
|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG 195
S L E +E +F+GNL + + ++ ++ N
Sbjct: 2 SHMLEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG--TNRK 59
Query: 196 FGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234
FG+V + + + KA+E G++ G + ++ GR
Sbjct: 60 FGYVDF---ESAEDLEKALELTGLKVFGNEIKLEKPKGR 95
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 143 QEETEFRQEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
+ ++ + +I + NL + ++L+ E F FG I+ + + G N F+++
Sbjct: 202 RTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVF 261
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
+ SA +A++ + R ++V L
Sbjct: 262 ENKD---SAERALQMNRSLLGNREISVSL 287
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK-NVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
E +++ N P + + + + + ++ L N + F ++
Sbjct: 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFN--TSRRFAYIDVTSKED-- 171
Query: 209 SAMKAVE-FDGVEFHGRVLTVKLDDGRRLKNKAEVRA 244
A VE +G++ G L K+ + + +
Sbjct: 172 -ARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSAT 207
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 133 RSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+ +S ++ T R+ + V NLP ++ V ++F+ GPI +V + + +K
Sbjct: 23 AAGLTSKKANEALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD---SLKK 79
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRL 236
N F + + A+ A+ + V L
Sbjct: 80 NFRFARIEFA---RYDGALAAITKTHKVVGQNEIIVSHLTECTL 120
|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-12
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
GK+F+G L + ++ F + GPI V+LIK + + GF F+ ++ PA K+
Sbjct: 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR--GFAFITFENPADAKN 63
Query: 210 AMKAVEFDGVEFHGRVLTVK 229
A K + +G HG+ + V+
Sbjct: 64 AAK--DMNGKSLHGKAIKVE 81
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-12
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
+ K+F+G LPN++ V E FGP+K L+K + G+ F Y
Sbjct: 85 PHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT-GLSKGYAFCEY 143
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
A+ + +G++ + L V+
Sbjct: 144 VDINVTDQAIAGL--NGMQLGDKKLLVQ 169
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-11
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDG 203
+++VGN+P I + +M+FF + + G + F F+ +
Sbjct: 1 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRS 60
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVK 229
+A+ FDG+ F G+ L ++
Sbjct: 61 VDE---TTQAMAFDGIIFQGQSLKIR 83
|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Length = 135 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 5e-12
Identities = 27/146 (18%), Positives = 39/146 (26%), Gaps = 29/146 (19%)
Query: 83 PSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATS 142
HS S P Q+ + +SL
Sbjct: 5 HHHHHHS-----------SGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSL--- 50
Query: 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYD 202
V NL + F ++G + +V + + E GF FV +
Sbjct: 51 ------------KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESR-GFAFVRFH 97
Query: 203 GPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ AM A DG GR L V
Sbjct: 98 DKRDAEDAMDA--MDGAVLDGRELRV 121
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 5e-12
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 128 PDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGY 187
+ +PS + K+F+G LPN++ V E FGP+K L+K
Sbjct: 91 LPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150
Query: 188 NNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
+ G+ F Y A+ +G++ + L V+
Sbjct: 151 AT-GLSKGYAFCEYVDINVTDQAIAG--LNGMQLGDKKLLVQR 190
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-11
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG------YNNFEKNVGFGFVIYDGPAA 206
+++VGN+P I + +M+FF + + G N +K F F+ +
Sbjct: 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK--NFAFLEFRSVDE 63
Query: 207 EKSAMKAVEFDGVEFHGRVLTVKL-DDGRRLKNKAEVRARWVAGNNGEEFRSTWHK 261
+A+ FDG+ F G+ L ++ D + L +E + +V G + HK
Sbjct: 64 ---TTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHK 116
|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Length = 87 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 6e-12
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG----YNNFEKNVGFGFVIYDG 203
+++VGN+P I + +M+FF + + G ++ F F+ +
Sbjct: 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRS 62
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVK 229
+A+ FDG+ F G+ L ++
Sbjct: 63 VDE---TTQAMAFDGIIFQGQSLKIR 85
|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 7e-12
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 8/104 (7%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN 193
S SS S ++VGNLP + + R+ G + + +G
Sbjct: 2 SSGSSGPGSPPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGP------ 55
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLK 237
F+ Y AA + A+ G+ L V L +R K
Sbjct: 56 RRRAFLHYPDSAAAQQAVSC--LQGLRLGTDTLRVALARQQRDK 97
|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 7e-12
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+++ NLP I + + F ++GPI+ + + + G +V+Y+ K+A+
Sbjct: 11 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT----PETRGTAYVVYEDIFDAKNAVD- 65
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
G R L V + R K + + +
Sbjct: 66 -HLSGFNVSNRYLVVLYYNANRAFQKMDTKKK 96
|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 8e-12
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
+ ++FV P +++ + E F FGP+K V ++ GF FV +
Sbjct: 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN---------GFAFVEF 72
Query: 202 DGPAAEKSAMKAV-EFDGVEFHGRVLTV 228
+ SA KA+ E G F + L V
Sbjct: 73 EEAE---SAAKAIEEVHGKSFANQPLEV 97
|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Length = 97 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 8e-12
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 153 KIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++F+GNLP + K + F +G I + + FGF+ +D P +S
Sbjct: 24 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN---------AFGFIQFDNP---QSVR 71
Query: 212 KAVE-FDGVEFHGRVLTVKLDDGRR 235
A+E G+ L +++
Sbjct: 72 DAIEXESQEMNFGKKLILEVSSSNA 96
|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 8e-12
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FV P + + E+F FGP+ +V++ K +K F V A +
Sbjct: 10 SVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK-----DKG-VFAIVEMGDVGARE---A 60
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
+ G L V+ + + ++ A +
Sbjct: 61 VLSQSQHSLGGHRLRVRPREQKEFQSPASKSPK 93
|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 9e-12
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
G++FV NL + + + F +GP+ + +K GF FV + P
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT-KKPKGFAFVTFMFPEHAVK 65
Query: 210 AMKAVEFDGVEFHGRVLTV 228
A V DG F GR+L V
Sbjct: 66 AYAEV--DGQVFQGRMLHV 82
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
E + Q ++FVGNLP I + F ++G V + + GFGF+
Sbjct: 11 FLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-------GFGFI 63
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ + A E DG R L +
Sbjct: 64 RLESRTLAEIAKA--ELDGTILKSRPLRI 90
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ V NL + L+ + F QFGP++ +++ ++ + G GFV + +
Sbjct: 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV--VDDRGRATGKGFVEFAAKPPAR 151
Query: 209 SAMKAVEFDGVEF---HGRVLTVKLDDGR 234
A++ DG R + V+ +
Sbjct: 152 KALERCG-DGAFLLTTTPRPVIVEPMEQF 179
|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 133 RSPSSSLATSQEETEFRQEG-KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
S S TE + + ++ V N+P + + + F QFG I +V +I N
Sbjct: 10 HSSGLVPRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---NER 66
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ GFGFV ++ A A + + G GR + V
Sbjct: 67 GSKGFGFVTFENSADADRARE--KLHGTVVEGRKIEV 101
|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-11
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVG 195
+S EGK+FVG L + + + F ++G I V+++K ++ G
Sbjct: 1 GSSGSSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ-----RSRG 55
Query: 196 FGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
FGFV ++ K AM A +G GR + V
Sbjct: 56 FGFVTFENIDDAKDAMMA--MNGKSVDGRQIRVD 87
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ + V NLP + + E R FG ++ L+ ++ G+GF Y +
Sbjct: 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT-GQSKGYGFAEYMKKDS-- 149
Query: 209 SAMKAVE-FDGVEFHGRVLTVK 229
A +A G R L V
Sbjct: 150 -AARAKSDLLGKPLGPRTLYVH 170
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
E +FR KI + LP + V + + +K + K G FV
Sbjct: 13 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD-------KYKGTAFVTL 64
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTV 228
++A+ F R L+V
Sbjct: 65 LNGEQAEAAIN--AFHQSRLRERELSV 89
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 140 ATSQEETEFRQEGK-IFVGNLPNWIK-KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
+ + T + + V LP + L G + K GF
Sbjct: 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLK--GFA 229
Query: 198 FVIYDGPAAEKSAMKAV-EFDGVEFHGRVLTVKL 230
+ Y+ + A +A + DG+ G L V
Sbjct: 230 VLEYETA---EMAEEAQQQADGLSLGGSHLRVSF 260
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-11
Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 132 NRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
+ +Q + +++VG++ + + + + F FGPIK++ +
Sbjct: 9 GGQQMGRGSAAQRQGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT-M 67
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK--LDDGRRLKNKAEVRARWVAG 249
K+ GF FV Y+ P A + A++ + + V GR + V + G+ ++ A
Sbjct: 68 KHKGFAFVEYEVPEAAQLALEQM--NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 125
Query: 250 NN 251
N
Sbjct: 126 NR 127
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 7e-09
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 133 RSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+ Q E R +I+V ++ + + F FG IK+ L + K
Sbjct: 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTT-GK 165
Query: 193 NVGFGFVIYDGPAAEKSAMKAVE-FDGVEFHGRVLTVKL 230
+ G+GF+ Y+ + + AV + + G+ L V
Sbjct: 166 HKGYGFIEYEKAQS---SQDAVSSMNLFDLGGQYLRVGK 201
|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 4e-11
Identities = 13/80 (16%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+++G++P + +++ GP+ N+ ++ G ++ G+ F+ + +
Sbjct: 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTG-----RSKGYAFIEFRDLESSA 58
Query: 209 SAMKAVEFDGVEFHGRVLTV 228
SA++ +G + R L
Sbjct: 59 SAVRN--LNGYQLGSRFLKC 76
|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-11
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 34/131 (25%)
Query: 117 QEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFG 176
+ +++ +DE+ RS +FV ++ ++ + E F +G
Sbjct: 6 ERVRNEDDDELEPGPQRSVEGW--------------ILFVTSIHEEAQEDEIQEKFCDYG 51
Query: 177 PIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232
IKN+ L G++ G+ V Y+ +A +A +G E G+ + V
Sbjct: 52 EIKNIHLNLDRRTGFSK-----GYALVEYETHKQALAAKEA--LNGAEIMGQTIQV---- 100
Query: 233 GRRLKNKAEVR 243
+ V+
Sbjct: 101 -----DWCFVK 106
|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 5e-11
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
+ KIFVG +P+ + + E+F++FG + V++I ++ GFGF+ ++ E+S
Sbjct: 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK-QRPRGFGFITFE---DEQS 64
Query: 210 AMKAVEFDGVEFHGRVLTVK 229
+AV + G+ + VK
Sbjct: 65 VDQAVNMHFHDIMGKKVEVK 84
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 6e-11
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
A ++E + + GKIFVG + ++ EFF Q+G I + L+ + ++ GFGFV
Sbjct: 78 AIPRDEQD--KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT-GQSRGFGFV 134
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
YD + + + + ++F R + +K
Sbjct: 135 TYD---SADAVDRVCQNKFIDFKDRKIEIK 161
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
++ K+F+G L + + E+F ++G + ++ ++K ++ GFGF+ ++ P++
Sbjct: 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT-GRSRGFGFLSFEKPSSVD 59
Query: 209 SAMKAV-EFDGVEFHGRVLTVK 229
+K D G+V+ K
Sbjct: 60 EVVKTQHILD-----GKVIDPK 76
|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-11
Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEK 192
SS ++ + ++V NLP + + + F ++G + V ++K K
Sbjct: 2 SSGSSGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTR-----K 56
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ G F+++ + ++ +A + + GRV+
Sbjct: 57 SKGVAFILFLDKDSAQNCTRA--INNKQLFGRVIKA 90
|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-11
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 121 SQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN 180
+ G D + + K+ V NL + + E F +FG +K
Sbjct: 5 TGGQQMGRDPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKK 64
Query: 181 VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
+ Y+ +++G V ++ A AMK ++ GV GR + ++L +
Sbjct: 65 AAVD--YDRSGRSLGTADVHFERRADALKAMK--QYKGVPLDGRPMDIQLVASQI 115
|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-11
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 20/109 (18%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+FV + + + + F ++G IKN+ L GY G+ V Y+ +
Sbjct: 24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK-----GYTLVEYETYKEAQ 78
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEFRS 257
+AM+ +G + G+ ++V + VR G RS
Sbjct: 79 AAMEG--LNGQDLMGQPISV---------DWCFVRGPPKGKRRGGRRRS 116
|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 7e-11
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
F+GNLP + + + EFFR I V L + +N E+ GFG+ ++ S +
Sbjct: 21 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLD---SLLS 76
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
A+ + R + V + D +
Sbjct: 77 ALSLNEESLGNRRIRVDVADQAQ 99
|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 8e-11
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+FV + + + + F ++G IKN+ L GY G+ V Y+ +
Sbjct: 25 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK-----GYTLVEYETYKEAQ 79
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRA 244
+AM+ +G + G+ ++V + VR
Sbjct: 80 AAMEG--LNGQDLMGQPISV---------DWCFVRG 104
|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 9e-11
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+IFV NLP ++ + F + G + + N K G G V ++ P + A
Sbjct: 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSK--GCGVVKFESPEVAERAC 65
Query: 212 KAVEFDGVEFHGRVLTVKLD 231
+ +G++ GR + V++D
Sbjct: 66 R--MMNGMKLSGREIDVRID 83
|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 9e-11
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
SS ++ E + Q ++VGNL + + L+++ F Q GP K+ +I N +
Sbjct: 2 SSGSSGMMEDDG-QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT---EHTSNDPY 57
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
FV + +A+ A+ +G + G+ + V
Sbjct: 58 CFVEFYEHRDAAAALAAM--NGRKILGKEVKV 87
|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 9e-11
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYD 202
GK+ V NL + + E F +FG +K + + G V ++
Sbjct: 21 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSL--GTADVHFE 78
Query: 203 GPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
A AMK +++GV GR + ++L
Sbjct: 79 RKADALKAMK--QYNGVPLDGRPMNIQL 104
|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Length = 115 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 9e-11
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 132 NRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
+ S+ + + E + +F+ +LP +++ F FG + + +
Sbjct: 6 SGLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQT-N 64
Query: 192 KNVGFGFVIYDGPAAEKSAMKAV-EFDGVEFHGRVLTVKL 230
+ FGFV YD P SA A+ +G + + L V+L
Sbjct: 65 LSKCFGFVSYDNPV---SAQAAIQSMNGFQIGMKRLKVQL 101
|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Length = 105 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S E+ ++ K+FVG L + V+ F+ FG I +++G + K G
Sbjct: 2 SSGSSGSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK--GCA 59
Query: 198 FVIYDGPAAEKSAMKAVEFDG---VEFHGRVLTVKLDDGRR 235
FV + ++A+ A G + L VK D +
Sbjct: 60 FVKFSSHTEAQAAIHA--LHGSQTMPGASSSLVVKFADTDK 98
|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-10
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 21/105 (20%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
++VG+L I + ++ F FG I N++L+K G ++ G+GF+ + +
Sbjct: 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTG-----RSKGYGFITFSDSECAR 61
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRA-RWVAGNNG 252
A++ +G E GR + V R ++G
Sbjct: 62 RALEQ--LNGFELAGRPMRV---------GHVTERLDGGSGPSSG 95
|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAA 206
+ + V NL + F ++G + +V + + + GF FV +
Sbjct: 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPR-GFAFVRFHDRRD 67
Query: 207 EKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
+ A A+ DG E GR L V++ R
Sbjct: 68 AQDAEAAM--DGAELDGRELRVQVARYGR 94
|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Length = 156 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 107 PPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKH 166
PPPP Q EP + N++ P + ++VG+ W
Sbjct: 23 MEPPPPVRQ--EPSPKPNNKTPAILYTYSGLRNRRA----------AVYVGSFSWWTTDQ 70
Query: 167 LVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224
+++ R G +V+ +K N ++ G+ V+ + ++ G +G
Sbjct: 71 QLIQVIRSIGVY-DVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL--LPGKVLNGE 127
Query: 225 VLTVKLDDGRRLKNKAEVRAR 245
+ V+ R+ ++ E +AR
Sbjct: 128 KVDVRP-ATRQNLSQFEAQAR 147
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 6/122 (4%)
Query: 110 PPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEE---TEFRQEGKIFVGNLPNWIKKH 166
+ + + E + + S + + V NL
Sbjct: 26 AEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPD 85
Query: 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226
+ F ++G + +V + + E GF FV + + AM A DG GR L
Sbjct: 86 TLRRVFEKYGRVGDVYIPRDRYTKESR-GFAFVRFHDKRDAEDAMDA--MDGAVLDGREL 142
Query: 227 TV 228
V
Sbjct: 143 RV 144
|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Length = 118 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-10
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 109 PPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLV 168
P + + + +++ A + ++ E + +F+ +LP +
Sbjct: 5 PQFGSASALSTSPLASVALS-------AAAAAAAGKQIEGPEGCNLFIYHLPQEFTDTDL 57
Query: 169 MEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV-EFDGVEFHGRVLT 227
F FG + + + + FGFV +D P SA A+ +G + + L
Sbjct: 58 ASTFLPFGNVISAKVFIDKQT-SLSKCFGFVSFDNPD---SAQVAIKAMNGFQVGTKRLK 113
Query: 228 VKL 230
V+L
Sbjct: 114 VQL 116
|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFV 199
+ R +FVGN+P + + + F + GP+ + L+ G K G+GF
Sbjct: 1 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG-----KPKGYGFC 55
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
Y SAM+ +G EF GR L V
Sbjct: 56 EYQDQETALSAMRN--LNGREFSGRALRV 82
|
| >2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 21/103 (20%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 130 AENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK---- 185
+ ++++A + ++ +++VG+L I + ++ F FG I+++ L+
Sbjct: 6 HHHSHMAAAMANNLQKGS-AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET 64
Query: 186 GYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G ++ G+GF+ + K A++ +G E GR + V
Sbjct: 65 G-----RSKGYGFITFSDSECAKKALEQ--LNGFELAGRPMKV 100
|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 37/131 (28%)
Query: 98 SKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVG 157
S+ PP P ++ + ++G
Sbjct: 2 SQTIGLPPQVNPQAVDHIIRSA---------PPRVTT-------------------AYIG 33
Query: 158 NLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217
N+P++ + ++ F+ FG I + G F+ YD + A+
Sbjct: 34 NIPHFATEADLIPLFQNFGFILDFKHYPEK-------GCCFIKYDTHEQAAVCIVAL--A 84
Query: 218 GVEFHGRVLTV 228
F GR L
Sbjct: 85 NFPFQGRNLRT 95
|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-10
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+ V L + + + E F ++GPI +V ++ ++ GF FV ++ K
Sbjct: 17 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-----RSRGFAFVYFENVDDAK 71
Query: 209 SAMKAVEFDGVEFHGRVLTV 228
A + +G+E GR + V
Sbjct: 72 EAKER--ANGMELDGRRIRV 89
|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-10
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+FVG + + + + FF ++G +K V +I K G+GFV +
Sbjct: 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSK--GYGFVSFYNDVD---VQ 64
Query: 212 KAVEFDGVEFHGRVLTVK 229
K VE + FHG+ L +
Sbjct: 65 KIVE-SQINFHGKKLKLG 81
|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 2e-10
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 5/123 (4%)
Query: 110 PPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVM 169
P D +P A + T + +++GNL W +
Sbjct: 27 PSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLT 86
Query: 170 EFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227
E G ++ IK + N ++ GF V A+ K M E HG+
Sbjct: 87 EAVHSLGVND-ILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL--LPKRELHGQNPV 143
Query: 228 VKL 230
V
Sbjct: 144 VTP 146
|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-10
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 22/141 (15%)
Query: 97 SSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFV 156
S P + + +G+ + + N P+ L V
Sbjct: 7 HHHHSSGLVPRGSHMASMTGGQQMGRGSRHVGNRANPDPNCCL---------------GV 51
Query: 157 GNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKSAMKAV 214
L + + + E F ++GPI +V ++ + + GF FV ++ K A +
Sbjct: 52 FGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKER- 107
Query: 215 EFDGVEFHGRVLTVKLDDGRR 235
+G+E GR + V +R
Sbjct: 108 -ANGMELDGRRIRVDFSITKR 127
|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-10
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
F+GNLP + + + EFFR I V L + +N E+ GFG+ ++ S +
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLD---SLLS 72
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
A+ + + + V + D +
Sbjct: 73 ALSLNEESLGNKRIRVDVADQAQ 95
|
| >2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 3e-10
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 150 QEGKIFVGNLPNWIKKHLVM---EFFRQFGPIKNVILIK--GYNNFEKNVGFGFVIYDGP 204
Q+ +FV L + V+ E+F +FG I V++ Y + +V Y
Sbjct: 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 73
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTV 228
A++ V + V GR L
Sbjct: 74 EDALRAIQCV--NNVVVDGRTLKA 95
|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-10
Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 29/150 (19%)
Query: 108 PPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEG---------KIFVGN 158
+ + +G D+ R S + E + E +FV +
Sbjct: 20 DQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTS 79
Query: 159 LPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214
+ ++ + E F +G IKN+ L G++ G+ V Y+ +A +A
Sbjct: 80 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK-----GYALVEYETHKQALAAKEA- 133
Query: 215 EFDGVEFHGRVLTVKLDDGRRLKNKAEVRA 244
+G E G+ + V + V+
Sbjct: 134 -LNGAEIMGQTIQV---------DWCFVKG 153
|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 3e-10
Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S + ++ K+ + N+P ++ ++ Q+G +++ + N +
Sbjct: 2 SSGSSGSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQV----NTDSETAVV 57
Query: 198 FVIYDGPAAEKSAMKAVE-FDGVEFHGRVLTVKL 230
V Y A +A++ +G + L V
Sbjct: 58 NVTYSSK---DQARQALDKLNGFQLENFTLKVAY 88
|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-10
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEK 208
I V NL ++ + E FR FG I + L K + ++ GF F+ +
Sbjct: 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAK---DKTTGQSKGFAFISFHRREDAA 71
Query: 209 SAMKAVEFDGVEFHGRVLTV 228
A+ V G + +L V
Sbjct: 72 RAIAGV--SGFGYDHLILNV 89
|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 15/111 (13%)
Query: 129 DAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYN 188
++ S EE + R +F L I+ + +FF G +++V +I
Sbjct: 6 SGKSPVREPVDNLSPEERDAR---TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS--- 59
Query: 189 NFEKNV----GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
++N G +V + S A+ G G + V+ +
Sbjct: 60 --DRNSRRSKGIAYVEFCEIQ---SVPLAIGLTGQRLLGVPIIVQASQAEK 105
|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWI--KKHLVMEFFRQFGPIKNVILIKGYNNFE 191
S SS + SQ++T F KIFVG LP + L ++F FG I+ ++I +
Sbjct: 3 SGSSGMHGSQKDTTFT---KIFVGGLP-YHTTDASLR-KYFEGFGDIEEAVVIT-----D 52
Query: 192 KNV----GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL-DDGRRLKNKAEVRARW 246
+ G+GFV A +A +A + GR V L G + ++ A
Sbjct: 53 RQTGKSRGYGFVTMADRA---AAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIG 109
Query: 247 VAG 249
V+G
Sbjct: 110 VSG 112
|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 88 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 6e-10
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+FVG + + + EFF Q+G + +V + K F FV + +
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK------PFRAFAFVTFADDQIAQ 56
Query: 209 SAMKAVEFDGVEFHGRVLTVK 229
S + + G + +
Sbjct: 57 SLCG----EDLIIKGISVHIS 73
|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 6e-10
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KN 193
S L + R + NL I + + E F I+ V + K+
Sbjct: 1 SHMLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--------SQDGKS 52
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G ++ + A + ++ E G E GR +++
Sbjct: 53 KGIAYIEFKSEADAEKNLE--EKQGAEIDGRSVSL 85
|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 7e-10
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAA 206
+++ L +++ + +G I + I K G+GFV +D P+A
Sbjct: 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-----KCKGYGFVDFDSPSA 59
Query: 207 EKSAMKAVEFDGVEFHGRVLTV 228
+ A+ A ++
Sbjct: 60 AQKAVTA--LKASGVQAQMAKQ 79
|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 7e-10
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKS 209
+F+ NL + + F + G IK+ + K N + GFGFV Y P +
Sbjct: 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQK 65
Query: 210 AMKAVEFDGVEFHGRVLTVKL 230
A+K + G G L V++
Sbjct: 66 ALK--QLQGHTVDGHKLEVRI 84
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 8e-10
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++VGNL I + ++ ++F+ GPI N+ ++ + KNV + FV Y A A
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIM--IDKNNKNVNYAFVEYHQSHD---ANIA 57
Query: 214 VE-FDGVEFHGRVLTV 228
++ +G + ++ +
Sbjct: 58 LQTLNGKQIENNIVKI 73
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGF 198
A +++ +FVG+L + + F+ F + ++ + G+GF
Sbjct: 76 AFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR--GYGF 133
Query: 199 VIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
V + ++AM ++ G + +GR L +
Sbjct: 134 VSFTSQDDAQNAMDSM--QGQDLNGRPLRINW 163
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 8e-10
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYN-NFEKNVGFGFVIYDGPAAEKSA 210
K+FVG +P + + E F Q+G + + +++ + N ++ G FV + K+A
Sbjct: 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF---YTRKAA 60
Query: 211 MKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNN 251
++A H + + ++K + V
Sbjct: 61 LEAQN----ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRK 97
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 9e-10
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 141 TSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVI 200
E+ ++ K+F+G + ++ + F FG I+ +++G + + G FV
Sbjct: 85 ADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR--GCAFVT 142
Query: 201 YDGPAAEKSAMKAV-EFDGVEFHGRVLTVKLDD 232
+ A ++A+KA+ + +E + VK D
Sbjct: 143 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175
|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Length = 90 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 9e-10
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 21/95 (22%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
I+VGNL V E F QFG + NV LI K GFGFV + +
Sbjct: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETK-----KPKGFGFVEMQEESVSE 57
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVR 243
A+ D +F GR + V +A +
Sbjct: 58 -AIAK--LDNTDFMGRTIRV---------TEANPK 80
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 9e-10
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V LP + + FR GPI +++ Y + G+ FV + + +
Sbjct: 5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKT-GYSYGYAFVDFTSEMD---SQR 60
Query: 213 AVE-FDGVEFHGRVLTV 228
A++ +G+ + L V
Sbjct: 61 AIKVLNGITVRNKRLKV 77
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVI 200
++ E ++ ++V NLP I + F ++G I IL + G FV
Sbjct: 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPR--GVAFVR 137
Query: 201 YDGPAAEKSAMKAVEFDGVEFHG--RVLTVKL 230
Y+ + A+ A + V G + L+V+L
Sbjct: 138 YNKREEAQEAISA--LNNVIPEGGSQPLSVRL 167
|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-09
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+++GNL + + + F ++ + G+ FV Y A++
Sbjct: 10 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KS--GYAFVDYPDQNWAIRAIE 62
Query: 213 AVEFDG-VEFHGRVLTVKLDDGRRLKN 238
G VE HG+++ V ++L++
Sbjct: 63 T--LSGKVELHGKIMEVDYSVSKKLRS 87
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG + ++H + ++F Q+G I+ + ++ + K GF FV +D S K
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS-GKKRGFAFVTFD---DHDSVDK 161
Query: 213 AVEFDGVEFHGRVLTVK 229
V +G V+
Sbjct: 162 IVIQKYHTVNGHNCEVR 178
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 8e-09
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
S+ E Q K+F+G L + F Q+G + + ++++ N +++ GFGFV Y
Sbjct: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT-KRSRGFGFVTY 62
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
A+ + GRV+ K R +
Sbjct: 63 ATVE---EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLT 103
|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 1e-09
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
I+VGN+ + F G + V ++ G GF ++ + + +
Sbjct: 8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSG-----HPKGFAYIEFSDKESVR 62
Query: 209 SAMKAVEFDGVEFHGRVLTVK 229
++ D F GR + V
Sbjct: 63 ---TSLALDESLFRGRQIKVI 80
|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Length = 90 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-09
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSA 210
+++GNL W + E G + +++ IK + N ++ GF V A+ K
Sbjct: 3 ALYIGNLTWWTTDEDLTEAVHSLG-VNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 61
Query: 211 MKAVEFDGVEFHGRVLTVK 229
M E HG+ V
Sbjct: 62 MDL--LPKRELHGQNPVVT 78
|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-09
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S ++ + +FVG+L I + F FG I + ++K K+ G+G
Sbjct: 2 SSGSSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT-GKSKGYG 60
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL--DDGRRLKNKAEVRARWVAGNNG 252
FV + ++A++ + G GR + K+ E + ++G
Sbjct: 61 FVSFFNKWDAENAIQ--QMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQSGPSSG 115
|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-09
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
SS ++ ++ + K+F+G +P + + + F +FG I + ++K + G
Sbjct: 2 SSGSSGMKDHD---AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT-GMHKGC 57
Query: 197 GFVIYDGPAAEKSAMKAV-EFDGVEFHGRVLTVKLDDGRR 235
F+ Y + A A+ E + R + VK D
Sbjct: 58 AFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97
|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S E + + N+P I K V++F +N + + +N + +G
Sbjct: 2 SSGSSGEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVL-VDNNGQGLGQA 60
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
V + E A K+ + +GR V +
Sbjct: 61 LVQF---KNEDDARKSERLHRKKLNGREAFVHV 90
|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-09
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 132 NRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
P S + +R I + NLP + + R+ + N
Sbjct: 13 GLVPRGSHMSKLPAKRYR----ITMKNLPEGCSWQDLKDLARENSLETTFSSV----NTR 64
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVE-FDGVEFHGRVLTVKLDDGRRLKNKA 240
G G + + +E+ ++A+E + +EF G V+TV+ DD ++
Sbjct: 65 DFDGTGALEF---PSEEILVEALERLNNIEFRGSVITVERDDNPPPIRRS 111
|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-09
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKSA 210
+++ NL + + ++ F +F K + G F+ + A
Sbjct: 27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQF---RMMTGRMRGQAFITFPNKEIAWQA 83
Query: 211 MKAVEFDGVEFHGRVLTV 228
+ V +G + +G++L +
Sbjct: 84 LHLV--NGYKLYGKILVI 99
|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
S + + +FV NL N + + ++ + F QFG ++ V +K + F+ +
Sbjct: 2 SSGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK---------DYAFIHF 52
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNG 252
D AM+ E +G + G + + + K + R +G
Sbjct: 53 DERDGAVKAME--EMNGKDLEGENIEIVF--AKPPDQKRKERKAQRQAASG 99
|
| >3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Length = 89 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 3e-09
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
K+FVG + + +FF Q+G + +V + K F FV +
Sbjct: 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK------PFRAFAFVTFADD 58
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTVK 229
+S + + G + +
Sbjct: 59 KVAQSLCG----EDLIIKGISVHIS 79
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 135 PSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV 194
P S+ S ++VG+L + + ++ E F GPI ++ + + +++
Sbjct: 2 PLGSMNPSAPSY---PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT-RRSL 57
Query: 195 GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G+ +V + PA + A+ + G+ + +
Sbjct: 58 GYAYVNFQQPADAERALD--TMNFDVIKGKPVRI 89
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
+ G IF+ NL I + + F FG I + ++ N + G+GFV
Sbjct: 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN---GSKGYGFV 148
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTV-----KLDDGRRLKNKAE 241
++ A + A++ + +G+ + R + V + + L +A+
Sbjct: 149 HFETQEAAERAIEKM--NGMLLNDRKVFVGRFKSRKEREAELGARAK 193
|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-09
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++ G + + + L+ + F FG I + + G+ FV + + A+
Sbjct: 28 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-------GYSFVRFSTHESAAHAI-- 78
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
V +G G VK G+ +
Sbjct: 79 VSVNGTTIEGH--VVKCYWGKESPDMTS 104
|
| >2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Length = 75 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 5e-09
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPAAEK 208
KIFVG L V +F QFG + + +L+ +K GFGFV ++
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMF-----DKTTNRHRGFGFVTFESED--- 52
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
K E E + +++ K
Sbjct: 53 IVEKVCEIHFHEINNKMVECKK 74
|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 5e-09
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
R E ++ V LP + + R+ G + + + G G V + ++
Sbjct: 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEF---VRKE 61
Query: 209 SAMKAVE-FDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
AV D +F + ++ R
Sbjct: 62 DMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGR 99
|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-09
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++VG L + I + + F QFG I+ + +++ F+ + A + A +
Sbjct: 14 TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-------QCAFIQFATRQAAEVAAE 66
Query: 213 AVEFDGVEFHGRVLTVK 229
F+ + +GR L VK
Sbjct: 67 KS-FNKLIVNGRRLNVK 82
|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 6e-09
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S T + + + NL + + E F + IK G K+ G+
Sbjct: 2 SSGSSGNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNG-----KSKGYA 56
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKN 238
F+ + K A+ + + E GR + ++L R N
Sbjct: 57 FIEFASFEDAKEALNS--CNKREIEGRAIRLELQGPRGSPN 95
|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Length = 97 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 6e-09
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 154 IFVGNLPNWIK----KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
I++ NL IK K + F +FG I ++++ + K G FVI+ ++ +
Sbjct: 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL----KMRGQAFVIFKEVSSATN 66
Query: 210 AMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
A++ G F+ + + ++ K +++ A+
Sbjct: 67 ALR--SMQGFPFYDKPMRIQYA-----KTDSDIIAK 95
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 6e-09
Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 16/233 (6%)
Query: 154 IFVGNLPNWIK----KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
I++ NL IK K + F QFG I ++++ + K G FVI+ ++ +
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL----KMRGQAFVIFKEVSSATN 67
Query: 210 AMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEFRSTWHKEREWHRRE 269
A++ G F+ + + ++ K +++ A+ + + K +
Sbjct: 68 ALR--SMQGFPFYDKPMRIQYA-----KTDSDIIAKMKGTFVERDRKREKRKPKSQETPA 120
Query: 270 FRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYY-ARRGDMHRARQTFENMRARGIE 328
+KAV+ P + ++++ + M A G
Sbjct: 121 TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI 180
Query: 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381
P + + + + + + ++ F +
Sbjct: 181 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPG 233
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 27/168 (16%), Positives = 44/168 (26%), Gaps = 6/168 (3%)
Query: 46 PPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPP 105
+ S+ T + P + P P
Sbjct: 102 VERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161
Query: 106 PPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKK 165
P PPP + + +Q +E +F+ NLP +
Sbjct: 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNE 221
Query: 166 HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++ F QF K V L+ G + FV +D +A A
Sbjct: 222 LMLSMLFNQFPGFKEVRLVPGRH------DIAFVEFDNEVQAGAARDA 263
|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Length = 75 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 8e-09
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG L + + E+F FG ++++ L K GF F+ + K
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT-NKRRGFCFITFKEEE---PVKK 56
Query: 213 AVEFDGVEFHGRVLTVK 229
+E +K
Sbjct: 57 IMEKKYHNVGLSKCEIK 73
|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 8e-09
Identities = 11/96 (11%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG 195
+S + + + + +++ NLP + + + + FG + + +++ + + G
Sbjct: 10 ASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSR--G 67
Query: 196 FGFVIYDGPAAEKSAMKAV-EFDGVEFHGRVLTVKL 230
GF + + F+G
Sbjct: 68 VGFARMESTEK---CEAVIGHFNGKFIKTPPGVSAP 100
|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-09
Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
S + +G + + LP K +++FF + N + + + ++ G FV +
Sbjct: 6 SGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP-VDFQGRSTGEAFVQF 64
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
A+++ A KA++ R + + ++
Sbjct: 65 ---ASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTSG 100
|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 9e-09
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+FVG+L + + F+ F + ++ G + G+GFV + +
Sbjct: 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-----SSRGYGFVSFTSQDDAQ 57
Query: 209 SAMKAVEFDGVEFHGRVLTV 228
+AM G + +GR L +
Sbjct: 58 NAMD--SMQGQDLNGRPLRI 75
|
| >2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-08
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--G 195
S +S + Q ++V NL + I + + F FG I + ++ E G
Sbjct: 2 SSGSSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-----EGGRSKG 56
Query: 196 FGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
FGFV + P A+ E +G + L V L
Sbjct: 57 FGFVCFSSPEEATKAVT--EMNGRIVATKPLYVAL 89
|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
I + LP + + V+ FG + N++++KG N F+ + A + +
Sbjct: 34 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN-------QAFIEMNTEEAANTMVNY 86
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNK 239
G+ + ++ + + LK
Sbjct: 87 YTSVTPVLRGQPIYIQFSNHKELKTD 112
|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Query: 128 PDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGY 187
+ +SPS S+ + +++ LP + V++FF++ +++ I I Y
Sbjct: 3 SGSSGKSPSGQ-KRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIA-Y 60
Query: 188 NNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWV 247
K G GFV + E A+ R + V + + K ++ + +
Sbjct: 61 GPNGKATGEGFVEF---RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRL 117
Query: 248 AG 249
Sbjct: 118 QS 119
|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+VGNLP + + F+ I++V L++ + +K GF +V +D + K A+
Sbjct: 17 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDT-DKFKGFCYVEFDEVDSLKEAL- 73
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
+DG R L V + +GR+
Sbjct: 74 --TYDGALLGDRSLRVDIAEGRK 94
|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
G IF+ NL I + + F FG I + ++ N + G+GFV ++ A + A
Sbjct: 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG---SKGYGFVHFETQEAAERA 61
Query: 211 MKAVEFDGVEFHGRVLTV 228
++ + +G+ + R + V
Sbjct: 62 IEKM--NGMLLNDRKVFV 77
|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Length = 88 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
I V NLP V + + + + ++N FV + A
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYV--------DRNKRTAFVTLL---NGEQAQN 55
Query: 213 AVE-FDGVEFHGRVLTVKL 230
A++ F F G+ L V+L
Sbjct: 56 AIQMFHQYSFRGKDLIVQL 74
|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-08
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN 193
S SS ++S + I V N+P + +++FF + I + +K YN
Sbjct: 2 SSGSSGSSSGKPGPTV----IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK-YNEKGMP 56
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G V ++ +A+ + + R + +
Sbjct: 57 TGEAMVAFESRDEATAAVI--DLNDRPIGSRKVKL 89
|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-08
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
I + LP + + V+ FG + N++++KG N F+ + A + +
Sbjct: 19 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN-------QAFIEMNTEEAANTMVNY 71
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNK 239
G+ + ++ + + LK
Sbjct: 72 YTSVTPVLRGQPIYIQFSNHKELKTD 97
|
| >2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV-- 194
SS ++ + + GK+FVG L + + +F Q+G + + +++K +K
Sbjct: 2 SSGSSGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK-----DKTTNQ 56
Query: 195 --GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
GFGFV + P + GR + K
Sbjct: 57 SRGFGFVKFKDPN---CVGTVLASRPHTLDGRNIDPKP 91
|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-08
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ + LP + + V+ FG + N++++KG N F+ A + +
Sbjct: 18 LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN-------QAFLELATEEAAITMVNY 70
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNK 239
+ + ++ + + LK
Sbjct: 71 YSAVTPHLRNQPIYIQYSNHKELKTS 96
|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-08
Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 128 PDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIK----KHLVMEFFRQFGPIKNVIL 183
S L ++ TE + + N+ + + L+ G I ++++
Sbjct: 8 KFERQHMDSPDLGSTPPHTE--PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV 65
Query: 184 IKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
N G ++++ + ++ ++ F G F G L +
Sbjct: 66 DLSD----DNSGKAYIVFATQESAQAFVE--AFQGYPFQGNPLVI 104
|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-08
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
+ + V +P ++ V +FF + V L+K + +N G G V + + +
Sbjct: 15 DDLYVSVHGMPFSAMENDVRDFFHGLR-VDAVHLLKDHVG--RNNGNGLVKF---LSPQD 68
Query: 210 AMKAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
+A++ + + R + V R+
Sbjct: 69 TFEALKRNRMLMIQRYVEVSPATERQWVAAG 99
|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 5e-08
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+++VG L + F +FG I+ + +KG F ++ Y+ A ++A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-------SFAYIQYESLDAAQAACA 71
Query: 213 AVEFDGVEFHGRVLTVKLD 231
+ G G +++D
Sbjct: 72 KM--RGFPLGGPDRRLRVD 88
|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-08
Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ + L + + + ++E ++FGPI V+++ V ++ +A+
Sbjct: 24 VHIRGLIDGVVEADLVEALQEFGPISYVVVM-------PKKRQALVEFEDVLGACNAVNY 76
Query: 214 VEFDGVEFHGRVLTV 228
+ + G V
Sbjct: 77 AADNQIYIAGHPAFV 91
|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 96 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 7e-08
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
IF+GNL I + L+ + F FG I I + + G+ F+ + A +A
Sbjct: 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 64
Query: 211 MKAVEFDGVEFHGRVLTV 228
++A+ +G R +TV
Sbjct: 65 IEAM--NGQYLCNRPITV 80
|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-08
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FVG+L I + F FG I + ++K K+ G+GFV + ++A++
Sbjct: 8 HVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMAT-GKSKGYGFVSFFNKWDAENAIQ 66
Query: 213 AVEFDGVEFHGRVLTV 228
+ G GR +
Sbjct: 67 --QMGGQWLGGRQIRT 80
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 9e-08
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
+ + V LP + + F G I++ L++ +++G+GFV Y P A
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT-GQSLGYGFVNYIDPK---DA 57
Query: 211 MKAVE-FDGVEFHGRVLTVK 229
KA+ +G+ + + V
Sbjct: 58 EKAINTLNGLRLQTKTIKVS 77
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVI 200
++ + ++ ++V LP + + + + F Q+G I IL+ + G GF+
Sbjct: 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR--GVGFIR 136
Query: 201 YDGPAAEKSAMKAVEFDGVEFHG--RVLTVKL 230
+D + A+K +G + G +TVK
Sbjct: 137 FDKRIEAEEAIKG--LNGQKPSGATEPITVKF 166
|
| >2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-08
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 130 AENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN 189
+ + SS + K+F+G L + + E+F QFG +K ++++
Sbjct: 4 SHHHHHHSSGLVPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---- 59
Query: 190 FEKNV----GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
+ GFGFV + A K + E + + K+
Sbjct: 60 -DPLTKRSRGFGFVTFMDQA---GVDKVLAQSRHELDSKTIDPKV 100
|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ V L + + ++E +FG I V++ V ++ + K +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMM-------MPFKRQALVEFENIDSAKECVTF 70
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKN 238
V G+ +R+
Sbjct: 71 AADVPVYIAGQQAFFNYSTSKRITR 95
|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 133 RSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+P +E R + V LP + + R+ G + + +
Sbjct: 2 GAPRGRYGPPSRRSENR----VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------ 51
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
G G V + A++ + D +F + ++ R
Sbjct: 52 --GTGVVEFVRKEDMTYAVR--KLDNTKFRSHEGETAYIRVKVDGPRSPSYGR 100
|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-07
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 129 DAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYN 188
+ + + + +G + + LP K +++FF + N I + +
Sbjct: 20 HMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLP-VD 78
Query: 189 NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
K G FV + A+++ A KA+ R + V
Sbjct: 79 PEGKITGEAFVQF---ASQELAEKALGKHKERIGHRYIEVFK 117
|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S +E ++V NL + ++ + F P +K +
Sbjct: 2 SSGSSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE-------RVKKIRDYA 54
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
FV + AMK +G G + V L
Sbjct: 55 FVHFSNREDAVEAMK--ALNGKVLDGSPIEVTL 85
|
| >1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 123 GNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVI 182
G+ E + L + E E Q K+F+G L + + ++ Q+G + + +
Sbjct: 1 GSSGSSGMEKTLETVPLERKKREKE--QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV 58
Query: 183 LIKGYNNFEKNV----GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
+++ + GFGFV + A +AM A GRV+ K
Sbjct: 59 VMR-----DPASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPK 101
|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-07
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV-GFGFVIYDGPAAEKSAM 211
K+FVG LP I + + FR+FGP+ K + G+ F+++ ++ ++ +
Sbjct: 10 KVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALI 69
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNK-AEVR 243
A + + + V +K+K ++R
Sbjct: 70 DACLEEDGKLYLCV------SSPTIKDKPVQIR 96
|
| >3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Length = 87 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-07
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPA 205
GK+FVG L K + ++F +FG + + + + N GFGF+++ A
Sbjct: 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM-----DPNTGRSRGFGFILFKDAA 64
Query: 206 AEKSAMKAVEFDGVEFHGRVLTVK 229
+ + + E GRV+ K
Sbjct: 65 SVEKVLDQKEH---RLDGRVIDPK 85
|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Length = 77 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-07
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPAAEK 208
K+F+G L + + E+F QFG +K ++++ + GFGFV + A
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR-----DPLTKRSRGFGFVTFMDQAGVD 56
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
+ E + + K+
Sbjct: 57 KVLAQ---SRHELDSKTIDPKV 75
|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 24/100 (24%)
Query: 138 SLATSQEETEFRQEGKIFVGNLP-----NWIKKHLVMEFFRQFGPIKNVILIK----GYN 188
S +S + +FV L +K+ F ++ G
Sbjct: 2 SSGSSGPNARSQPSKTLFVKGLSEDTTEETLKES--------FDGSVRARIVTDRETG-- 51
Query: 189 NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ GFGFV ++ K+A +A + E G +T+
Sbjct: 52 ---SSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTL 86
|
| >2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV- 194
SS + + + + + V LP + + E+F FG + V + K +
Sbjct: 2 SSGSSGVKRAVQ--KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK-----DLKTG 54
Query: 195 ---GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
GFGFV + + M GR KL
Sbjct: 55 HSKGFGFVRFTEYETQVKVMSQRH----MIDGRWCDCKL 89
|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-07
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S E R+ ++V + L+ F FG I ++ + +
Sbjct: 2 SSGSSGERRAPRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDL-------SMDPPRNCA 52
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNK 239
FV Y+ + A+ + +G + L V + R+
Sbjct: 53 FVTYEKMESADQAVAEL--NGTQVESVQLKVNI--ARKQPML 90
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 5e-07
Identities = 37/242 (15%), Positives = 72/242 (29%), Gaps = 7/242 (2%)
Query: 84 SPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQ 143
+ P ++ +R PPP E+++ + + + +
Sbjct: 35 NQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWDPHND 94
Query: 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG 203
+ +FV + + + F +GPIK + ++ + K G+ F+ Y+
Sbjct: 95 PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS-GKPRGYAFIEYEH 153
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEFRSTWHKER 263
SA K DG + GR + V ++ GR +K G R
Sbjct: 154 ERDMHSAYK--HADGKKIDGRRVLVDVERGRTVKGW----RPRRLGGGLGGTRRGGADVN 207
Query: 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMR 323
H + + + + R R R+R R
Sbjct: 208 IRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSR 267
Query: 324 AR 325
+R
Sbjct: 268 SR 269
|
| >3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Length = 100 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 5e-07
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
G + + + K + F + G + N+ K GF FV K +
Sbjct: 13 GAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT-GKTKGFLFVECGSMNDAKKII 71
Query: 212 KAVEFDGVEFHGR-VLTV-KLDDGRRLKN 238
K+ F G + L + + D R +
Sbjct: 72 KS--FHGKRLDLKHRLFLYTMKDVERYNS 98
|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Length = 193 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 7e-07
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+++ P + E+ G + N+ + + + K G FV++D + +SA K
Sbjct: 112 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFK--GSIFVVFD---SIESAKKF 166
Query: 214 VEFDGVEFHGRVLTVK 229
VE G ++ L +
Sbjct: 167 VETPGQKYKETDLLIL 182
|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 8e-07
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 122 QGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV 181
+G+ + S+ + + + LP ++ + FF P++ V
Sbjct: 17 RGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVR-V 75
Query: 182 ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
+ G + + G V + A + A+ A+ D R + + L+ N A
Sbjct: 76 HIEIGPDG--RVTGEADVEF---ATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAY 130
Query: 242 VRARW 246
Sbjct: 131 SSQVM 135
|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-07
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN 193
S SS ++ Q T + + LP ++ + FF P+ V + G + +
Sbjct: 2 SSGSSGSSFQSTTGH----CVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDG--RV 54
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
G V + A + A+ A+ D R + + L
Sbjct: 55 TGEADVEF---ATHEDAVAAMAKDKANMQHRYVELFL 88
|
| >2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 143 QEETEFRQEGKIFVGNLP------NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
+ + + I V N+P K+++ + F +FG I N + K G+
Sbjct: 7 RPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDG---KTKGY 63
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGR-VLTV-KLDD 232
F+ Y PA A+K DG + + V D
Sbjct: 64 IFLEYASPAHAVDAVKN--ADGYKLDKQHTFRVNLFTD 99
|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
I NLP + E F +FG + V+L + V + P + A +
Sbjct: 13 ILAKNLPAGTLAAEIQETFSRFGSLGRVLL-------PEGGITAIVEFLEPLEARKAFRH 65
Query: 214 VEFDGVEFHGRVLTV 228
+ +FH L +
Sbjct: 66 L--AYSKFHHVPLYL 78
|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 134 SPSSSLATSQEETEF---RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN----VILIKG 186
S SS TS E +F + + + LP V+ FF Q PI ++ +
Sbjct: 3 SGSSGGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 62
Query: 187 YNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL---DDGRRLKNKAEVR 243
+ + G FV++ A E+ A A+ R + + + +++ N+
Sbjct: 63 PDG--RPTGDAFVLF---ACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSA 117
Query: 244 ARWVAG 249
+ +G
Sbjct: 118 SGPSSG 123
|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
I + N+ +M + + N+ LIK ++N GF FV
Sbjct: 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQT-QQNRGFAFVQLSSAMDASQL 69
Query: 211 MKAV--EFDGVEFHGRVLTV 228
++ + ++ G+ + V
Sbjct: 70 LQILQSLHPPLKIDGKTIGV 89
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 2e-06
Identities = 27/139 (19%), Positives = 40/139 (28%), Gaps = 3/139 (2%)
Query: 13 PHTPATLLTHKPHHPTTTSLSFSLKQPP--PPSPTPPEPHNLHRPPKSSRPTRSKIPKNP 70
P P S + P P P + P+ R +R K K
Sbjct: 60 PRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVE 119
Query: 71 FKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDA 130
++ + S + + K PPPPP PP E+ + + + A
Sbjct: 120 YREMDESLANLSEDEYYSE-EERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAA 178
Query: 131 ENRSPSSSLATSQEETEFR 149
TSQE F
Sbjct: 179 FQSRLPHDRMTSQEAACFP 197
|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ + P + + VMEF P + +++ + G+ FV + + E+ +
Sbjct: 12 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHG--NKTGYIFVDF---SNEEEVKQ 65
Query: 213 AVEFDGVEFHGRVLTV 228
A++ + GR + V
Sbjct: 66 ALKCNREYMGGRYIEV 81
|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPI-----KNVILIKGYNNFEKNVGFGFVIYDGPAAE 207
+I+V NL +++ + F ++ + + I+ + G F+ A
Sbjct: 47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG-RMKGQAFIGLPNEKAA 105
Query: 208 KSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
A+K E +G G+ + V+ ++ +
Sbjct: 106 AKALK--EANGYVLFGKPMVVQFA-----RSARPKQDP 136
|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+++G+L ++ ++ + F G + +V +I+ G+ FV + A + +
Sbjct: 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT-GIPAGYCFVEFADLATAEKCL 69
Query: 212 KAVEFDGVEFHGRVLTVKL 230
+G G +
Sbjct: 70 HK--INGKPLPGATPAKRF 86
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 16/124 (12%)
Query: 119 PQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNL-PNWIKKHLVMEFFRQFGP 177
S G R LA + + V NL P + + F +G
Sbjct: 9 HHSSGLVPRGSHMGRIAIPGLAGAGNSV-------LLVSNLNPERVTPQSLFILFGVYGD 61
Query: 178 IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLK 237
++ V ++ V + AM +G + HG+ + + L + ++
Sbjct: 62 VQRVKILF------NKKENALVQMADGNQAQLAMSH--LNGHKLHGKPIRITLSKHQNVQ 113
Query: 238 NKAE 241
E
Sbjct: 114 LPRE 117
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 45.5 bits (106), Expect = 2e-05
Identities = 14/134 (10%), Positives = 28/134 (20%), Gaps = 2/134 (1%)
Query: 13 PHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFK 72
H P P S S + PP P PP+ + + + P
Sbjct: 13 NHEPEPAGGATPGATLPKSPSQL--RKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEI 70
Query: 73 NLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAEN 132
++ + S + + E + + +
Sbjct: 71 SVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGS 130
Query: 133 RSPSSSLATSQEET 146
+ L
Sbjct: 131 GAGRLDLPPGFMFK 144
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 44.3 bits (103), Expect = 4e-05
Identities = 16/141 (11%), Positives = 34/141 (24%)
Query: 15 TPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNL 74
+PA + +H + + P SP+ PP P++ +
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF 62
Query: 75 LNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRS 134
++ + + ++ P P A S +
Sbjct: 63 EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATV 122
Query: 135 PSSSLATSQEETEFRQEGKIF 155
+ S G +F
Sbjct: 123 NGTVEGGSGAGRLDLPPGFMF 143
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 44.3 bits (103), Expect = 5e-05
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 2/109 (1%)
Query: 40 PPPSPTPPEPHNLHRPPKSSRPTRSK-IPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSS 98
P+ TP N H P + T +PK+P + P + ++ S
Sbjct: 2 GSPAATPEIRVN-HEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILS 60
Query: 99 KLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETE 147
P Q E P A + P + A+ +
Sbjct: 61 LFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSS 109
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 42.4 bits (98), Expect = 2e-04
Identities = 17/129 (13%), Positives = 28/129 (21%), Gaps = 7/129 (5%)
Query: 6 SLSAPHFPHTPATLLTH---KPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPT 62
+ H P PA T P P+ + PP +P+
Sbjct: 9 EIRVNHEP-EPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFV 67
Query: 63 RSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQ 122
P + S P + + + S P E +
Sbjct: 68 PEISVTTPSQPAEASEVAGGTQPAAGAQEPG---ETAASEAASSSLPAVVVETFPATVNG 124
Query: 123 GNDEIPDAE 131
+ A
Sbjct: 125 TVEGGSGAG 133
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 154 IFVGNL-PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V NL P + + F +G ++ V ++ V + AM
Sbjct: 6 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILF------NKKENALVQMADGNQAQLAMS 59
Query: 213 AVEFDGVEFHGRVLTVKL 230
+G + HG+ + + L
Sbjct: 60 --HLNGHKLHGKPIRITL 75
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 18/146 (12%), Positives = 48/146 (32%), Gaps = 26/146 (17%)
Query: 93 KLRLS-SKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQE 151
+R++ SK P ++ + +++ + S
Sbjct: 70 PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA-------- 121
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+ + N+P + + + F G + +KG+ F+K+ + + + A+
Sbjct: 122 -TLHLSNIPPSVSEEDLKVLFSSNGGV-----VKGFKFFQKDRKMALIQMG---SVEEAV 172
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLK 237
+A+ + H L + L+
Sbjct: 173 QALI----DLHNH----DLGENHHLR 190
|
| >2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 154 IFVGNLPNWIK------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAE 207
I V N+P K+++ + F +FG I N + K G+ F+ Y PA
Sbjct: 4 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDG---KTKGYIFLEYASPAHA 60
Query: 208 KSAMKAVEFDGVEFHGR 224
A+K DG + +
Sbjct: 61 VDAVKN--ADGYKLDKQ 75
|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-05
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 8/98 (8%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQF---GPIKNVILIKGYNNFEK 192
SS + E + + + LP V F + V I +
Sbjct: 2 SSGSSGMMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREG--R 59
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
G FV +E A++ D R + V
Sbjct: 60 QSGEAFVEL---ESEDDVKLALKKDRESMGHRYIEVFK 94
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 4e-05
Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 13/141 (9%)
Query: 95 RLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKI 154
+++ +S P P + + E + +P + +
Sbjct: 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRI----QHPSNVL 126
Query: 155 FVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214
N P + + E + G + +K ++ + G + +D + A++ +
Sbjct: 127 HFFNAPLEVTEENFFEICDELGVKRPTS-VKVFSGKSERSSSGLLEWDSKS---DALETL 182
Query: 215 -EFDGVEFHGRV----LTVKL 230
+ + T+KL
Sbjct: 183 GFLNHYQMKNPNGPYPYTLKL 203
|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 112 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-05
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 131 ENRSPSSSLATSQEETEFRQEGK-IFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYN 188
+ Q+ + ++ G+ I + NLP+ V++ +G IKN IL++ +
Sbjct: 4 GSSGKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKS 63
Query: 189 NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
F+ + + + + F GR + V
Sbjct: 64 -------QAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 42/300 (14%), Positives = 93/300 (31%), Gaps = 64/300 (21%)
Query: 304 NYYARRGDMHRARQTFENMRARGIEPTLH-------VYTNLIHAYAVGRDMEEALSCVRK 356
Y + + A + F+ +A + + + +Y + ++ R+
Sbjct: 111 MYELDQREYLSAIKFFK--KAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Query: 357 -----MKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLN-----AIIYG 405
+ E + L+ +S+ F + E A F++A
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228
Query: 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465
NI + E A I + ++ + VFE E
Sbjct: 229 NIGLCKNSQSQYEDA---------------IPYF-------------KRAIAVFE---ES 257
Query: 466 GFSPSII-SYGCLINLYTKIGKVSKALEVSK----VMKSSGIKHNMKTYSMLINGFLKLK 520
PS+ +Y + ++ K+GK+ KA E + +G + + L + +L
Sbjct: 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317
Query: 521 DWANVFAVFEDVMRDGLKPDVV-LYNNIIRAFCGMGNMDRAIH-------IVKEMQKERH 572
D + F+ + L D+ ++ + + N +A + + +Q
Sbjct: 318 DEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 18/234 (7%)
Query: 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL 399
A+ +G ++ ++ +++K E + + + +E K A
Sbjct: 9 AFYIGSY-QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVV---LDEIKPSSAPE 64
Query: 400 NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459
+ Y +R L R+M M Y N + L
Sbjct: 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL 124
Query: 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS----SGIKHNMKTYSMLING 515
+ S+ + + K+ ++ A + K M+ + + + L G
Sbjct: 125 HQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 516 FLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569
KL+D + +F++ M D P ++L N G + A +++E
Sbjct: 179 GEKLQD---AYYIFQE-MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
|
| >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ G L N + ++ ++ + G + +++ + F Y K A
Sbjct: 30 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-------PYSFARYRTTEESKRAYVT 82
Query: 214 V 214
+
Sbjct: 83 L 83
|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQF---GPIKNVILIKGYNNFEKNVGFGF 198
S+ E E I LP V+ FF + + + K G
Sbjct: 2 SKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDG--KRRGDAL 59
Query: 199 VIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
+ +E+ KA+E + R + V
Sbjct: 60 IEM---ESEQDVQKALEKHRMYMGQRYVEVYE 88
|
| >2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546 | Back alignment and structure |
|---|
Score = 42.4 bits (98), Expect = 5e-04
Identities = 18/140 (12%), Positives = 36/140 (25%)
Query: 12 FPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPF 71
F P + S + P+ RPP + +++ P
Sbjct: 10 FARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69
Query: 72 KNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAE 131
L + +P + + A K+ P PP Q+ +
Sbjct: 70 LRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129
Query: 132 NRSPSSSLATSQEETEFRQE 151
R + + + + E
Sbjct: 130 ARELGARVRALKASAQDAGE 149
|
| >2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 6e-04
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQF-----GPIKNVILIKGYNNFEKNVGFGFV 199
+ + V LP + L+ +F GP+ + ++ G +
Sbjct: 2 SSGSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSW---------QRLGCGGVL 52
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
+ PA A + + E HG L+++
Sbjct: 53 TFREPA---DAERVLAQADHELHGAQLSLR 79
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 6 SLSAPHF-PHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRS 64
S++AP P + + H ++LS + PP P H + PT
Sbjct: 32 SMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLG 91
Query: 65 KIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQ 115
+P ++ P S + L L+ L P P +
Sbjct: 92 FSTGSP-----QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTK 137
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 779 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 4fxv_A | 99 | ELAV-like protein 1; RNA recognition motif, putati | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3s8s_A | 110 | Histone-lysine N-methyltransferase SETD1A; chromat | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 2lkz_A | 95 | RNA-binding protein 5; RRM; NMR {Homo sapiens} | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 2lxi_A | 91 | RNA-binding protein 10; NMR {Homo sapiens} | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3n9u_C | 156 | Cleavage and polyadenylation specificity factor S; | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2la6_A | 99 | RNA-binding protein FUS; structural genomics, nort | 99.77 | |
| 3md1_A | 83 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 1u6f_A | 139 | Tcubp1, RNA-binding protein UBP1; trypanosome, mRN | 99.77 | |
| 2wbr_A | 89 | GW182, gawky, LD47780P; DNA-binding protein, RRM, | 99.77 | |
| 3p5t_L | 90 | Cleavage and polyadenylation specificity factor S; | 99.77 | |
| 2khc_A | 118 | Testis-specific RNP-type RNA binding protein; RRM, | 99.77 | |
| 2x1f_A | 96 | MRNA 3'-END-processing protein RNA15; transcriptio | 99.77 | |
| 3bs9_A | 87 | Nucleolysin TIA-1 isoform P40; RNA recognition mot | 99.77 | |
| 1sjq_A | 105 | Polypyrimidine tract-binding protein 1; babbab mot | 99.77 | |
| 3ns6_A | 100 | Eukaryotic translation initiation factor 3 subuni; | 99.76 | |
| 3mdf_A | 85 | Peptidyl-prolyl CIS-trans isomerase E; RRM domain, | 99.76 | |
| 3r27_A | 100 | HnRNP L, heterogeneous nuclear ribonucleoprotein L | 99.76 | |
| 2j76_E | 100 | EIF-4B, EIF4B, eukaryotic translation initiation f | 99.76 | |
| 2cqc_A | 95 | Arginine/serine-rich splicing factor 10; RNA recog | 99.75 | |
| 2e5h_A | 94 | Zinc finger CCHC-type and RNA-binding motif- conta | 99.75 | |
| 2dnz_A | 95 | Probable RNA-binding protein 23; RNA recognition m | 99.75 | |
| 4f25_A | 115 | Polyadenylate-binding protein 1; RRM fold, transla | 99.75 | |
| 1whw_A | 99 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.75 | |
| 2jrs_A | 108 | RNA-binding protein 39; RNA binding motif of RBM39 | 99.75 | |
| 2do4_A | 100 | Squamous cell carcinoma antigen recognized by T- c | 99.75 | |
| 2cpz_A | 115 | CUG triplet repeat RNA-binding protein 1; RRM doma | 99.75 | |
| 2cq0_A | 103 | Eukaryotic translation initiation factor 3 subunit | 99.75 | |
| 1x4h_A | 111 | RNA-binding protein 28; structural genomics, RRM d | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 1x5u_A | 105 | Splicing factor 3B subunit 4 (spliceosome associat | 99.75 | |
| 2cqb_A | 102 | Peptidyl-prolyl CIS-trans isomerase E; RNA recogni | 99.75 | |
| 2dgs_A | 99 | DAZ-associated protein 1; RRM domain, structural g | 99.74 | |
| 2cq4_A | 114 | RNA binding motif protein 23; RRM domain, structur | 99.74 | |
| 1oo0_B | 110 | CG8781-PA, drosophila Y14; RNA recognition motif, | 99.74 | |
| 2dnm_A | 103 | SRP46 splicing factor; RRM domain, RBD, structural | 99.74 | |
| 2rs2_A | 109 | Musashi-1, RNA-binding protein musashi homolog 1; | 99.74 | |
| 2m2b_A | 131 | RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio | 99.74 | |
| 2err_A | 109 | Ataxin-2-binding protein 1; protein-RNA complex, R | 99.74 | |
| 2cq1_A | 101 | PTB-like protein L; RRM domain, structural genomic | 99.74 | |
| 2dgo_A | 115 | Cytotoxic granule-associated RNA binding protein 1 | 99.74 | |
| 1p27_B | 106 | RNA-binding protein 8A; nuclear protein, mRNA spli | 99.74 | |
| 1x5t_A | 96 | Splicing factor 3B subunit 4; structure genomics, | 99.74 | |
| 3ucg_A | 89 | Polyadenylate-binding protein 2; ferredoxin-like, | 99.74 | |
| 1s79_A | 103 | Lupus LA protein; RRM, alpha/beta, RNA binding pro | 99.73 | |
| 2kxn_B | 129 | Transformer-2 protein homolog beta; SR protein, RR | 99.73 | |
| 2dnh_A | 105 | Bruno-like 5, RNA binding protein; RRM domain, RBD | 99.73 | |
| 3s7r_A | 87 | Heterogeneous nuclear ribonucleoprotein A/B; ferre | 99.73 | |
| 2fy1_A | 116 | RNA-binding motif protein, Y chromosome, family 1 | 99.73 | |
| 2jwn_A | 124 | Embryonic polyadenylate-binding protein 2-B; epabp | 99.73 | |
| 1x5s_A | 102 | Cold-inducible RNA-binding protein; structure geno | 99.73 | |
| 2cpf_A | 98 | RNA binding motif protein 19; RNA recognition moti | 99.73 | |
| 2mss_A | 75 | Protein (musashi1); RNA-binding domain, RNA bindin | 99.73 | |
| 2ywk_A | 95 | Putative RNA-binding protein 11; RRM-domain, struc | 99.73 | |
| 2dgx_A | 96 | KIAA0430 protein; RRM domain, structural genomics, | 99.73 | |
| 4a8x_A | 88 | RNA-binding protein with serine-rich domain 1; tra | 99.73 | |
| 2dgp_A | 106 | Bruno-like 4, RNA binding protein; RRM domain, str | 99.73 | |
| 2dng_A | 103 | Eukaryotic translation initiation factor 4H; RRM d | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 2cpe_A | 113 | RNA-binding protein EWS; RNA recognition motif, RR | 99.73 | |
| 2ad9_A | 119 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.72 | |
| 2div_A | 99 | TRNA selenocysteine associated protein; structural | 99.72 | |
| 1wi8_A | 104 | EIF-4B, eukaryotic translation initiation factor 4 | 99.72 | |
| 1p1t_A | 104 | Cleavage stimulation factor, 64 kDa subunit; RNA r | 99.72 | |
| 2kt5_A | 124 | RNA and export factor-binding protein 2; chaperone | 99.72 | |
| 1x4e_A | 85 | RNA binding motif, single-stranded interacting pro | 99.72 | |
| 1x4d_A | 102 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.72 | |
| 2j8a_A | 136 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.72 | |
| 3ulh_A | 107 | THO complex subunit 4; nuclear protein, RNA bindin | 99.72 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.72 | |
| 2d9p_A | 103 | Polyadenylate-binding protein 3; RRM domain, struc | 99.72 | |
| 1uaw_A | 77 | Mouse-musashi-1; RNP-type structure, RNA binding p | 99.71 | |
| 2cqp_A | 98 | RNA-binding protein 12; RNA recognition motif, RRM | 99.71 | |
| 1wex_A | 104 | Hypothetical protein (riken cDNA 2810036L13); stru | 99.71 | |
| 2cqi_A | 103 | Nucleolysin TIAR; RNA recognition motif, RRM, RNA | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 1x4b_A | 116 | Heterogeneous nuclear ribonucleoproteins A2/B1; st | 99.71 | |
| 2cqd_A | 116 | RNA-binding region containing protein 1; RNA recog | 99.71 | |
| 2cpi_A | 111 | CCR4-NOT transcription complex subunit 4; RNA reco | 99.71 | |
| 2a3j_A | 127 | U1 small nuclear ribonucleoprotein A; computationa | 99.71 | |
| 2dhg_A | 104 | TRNA selenocysteine associated protein (SECP43); R | 99.71 | |
| 2ki2_A | 90 | SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA | 99.71 | |
| 2cq3_A | 103 | RNA-binding protein 9; RRM domain, structural geno | 99.71 | |
| 1x4a_A | 109 | Splicing factor, arginine/serine-rich 1 (splicing | 99.7 | |
| 2ek1_A | 95 | RNA-binding protein 12; RNA recognition motif, dim | 99.7 | |
| 2cqg_A | 103 | TDP-43, TAR DNA-binding protein-43; RNA recognitio | 99.7 | |
| 2nlw_A | 105 | Eukaryotic translation initiation factor 3 subunit | 99.7 | |
| 2dgv_A | 92 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.7 | |
| 2dnn_A | 109 | RNA-binding protein 12; RRM domain, RBD, structura | 99.7 | |
| 3ex7_B | 126 | RNA-binding protein 8A; protein-RNA complex, mRNA | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 2dh8_A | 105 | DAZ-associated protein 1; RRM domain, structural g | 99.7 | |
| 2jvr_A | 111 | Nucleolar protein 3; RNA recognition motif, nucleu | 99.7 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 99.7 | |
| 2hgl_A | 136 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.69 | |
| 2do0_A | 114 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.69 | |
| 2lea_A | 135 | Serine/arginine-rich splicing factor 2; SR protein | 99.69 | |
| 2db1_A | 118 | Heterogeneous nuclear ribonucleoprotein F; RRM dom | 99.69 | |
| 1x4f_A | 112 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.69 | |
| 2cph_A | 107 | RNA binding motif protein 19; RNA recognition moti | 99.69 | |
| 1h2v_Z | 156 | 20 kDa nuclear CAP binding protein; CAP-binding-co | 99.69 | |
| 2dis_A | 109 | Unnamed protein product; structural genomics, RRM | 99.69 | |
| 1fj7_A | 101 | Nucleolin RBD1, protein C23; RNP, RRM, RNA binding | 99.68 | |
| 2kn4_A | 158 | Immunoglobulin G-binding protein G, splicing FACT | 99.68 | |
| 2xnq_A | 97 | Nuclear polyadenylated RNA-binding protein 3; tran | 99.68 | |
| 2krb_A | 81 | Eukaryotic translation initiation factor 3 subunit | 99.68 | |
| 2lmi_A | 107 | GRSF-1, G-rich sequence factor 1; G-rich RNA seque | 99.68 | |
| 2dgw_A | 91 | Probable RNA-binding protein 19; RRM domain, struc | 99.68 | |
| 2la4_A | 101 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.68 | |
| 1iqt_A | 75 | AUF1, heterogeneous nuclear ribonucleoprotein D0; | 99.68 | |
| 2cpj_A | 99 | Non-POU domain-containing octamer-binding protein; | 99.68 | |
| 2cpy_A | 114 | RNA-binding protein 12; RRM domain, structural gen | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 1wel_A | 124 | RNA-binding protein 12; structural genomics, NPPSF | 99.67 | |
| 1rk8_A | 165 | CG8781-PA, CG8781-PA protein; mRNA processing, RRM | 99.67 | |
| 1wez_A | 102 | HnRNP H', FTP-3, heterogeneous nuclear ribonucleop | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 2jvo_A | 108 | Nucleolar protein 3; nucleus, phosphorylation, rib | 99.67 | |
| 1nu4_A | 97 | U1A RNA binding domain; RNA recognition motif, U1 | 99.67 | |
| 1x5o_A | 114 | RNA binding motif, single-stranded interacting pro | 99.66 | |
| 1why_A | 97 | Hypothetical protein riken cDNA 1810017N16; RNA re | 99.66 | |
| 2fc8_A | 102 | NCL protein; structure genomics, RRM_1 domain, str | 99.66 | |
| 3q2s_C | 229 | Cleavage and polyadenylation specificity factor S; | 99.66 | |
| 2fc9_A | 101 | NCL protein; structure genomics, RRM_1 domain, str | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 1whx_A | 111 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.66 | |
| 3lqv_A | 115 | PRE-mRNA branch site protein P14; cysless mutant, | 99.66 | |
| 1x4g_A | 109 | Nucleolysin TIAR; structural genomics, RRM domain, | 99.66 | |
| 2lcw_A | 116 | RNA-binding protein FUS; RRM, nucleic acid binding | 99.47 | |
| 2cq2_A | 114 | Hypothetical protein LOC91801; RRM domain, structu | 99.66 | |
| 1wg5_A | 104 | Heterogeneous nuclear ribonucleoprotein H; structu | 99.66 | |
| 2e5j_A | 97 | Methenyltetrahydrofolate synthetase domain contain | 99.66 | |
| 1x4c_A | 108 | Splicing factor, arginine/serine-rich 1; structura | 99.65 | |
| 1fjc_A | 96 | Nucleolin RBD2, protein C23; RNP, RRM, RNA binding | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 2cpx_A | 115 | Hypothetical protein FLJ11016; RRM domain, structu | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 2hgm_A | 126 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.64 | |
| 2dha_A | 123 | FLJ20171 protein; RRM domain, structural genomics, | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2dnp_A | 90 | RNA-binding protein 14; RRM domain, RBD, structura | 99.64 | |
| 2dnq_A | 90 | RNA-binding protein 4B; RRM domain,RBD, structural | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2cpd_A | 99 | Apobec-1 stimulating protein; RNA recognition moti | 99.63 | |
| 2hvz_A | 101 | Splicing factor, arginine/serine-rich 7; RRM, RNA | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 2hgn_A | 139 | Heterogeneous nuclear ribonucleoprotein F; RNA rec | 99.63 | |
| 2dgt_A | 92 | RNA-binding protein 30; RRM domain, structural gen | 99.62 | |
| 2xs2_A | 102 | Deleted in azoospermia-like; RNA binding protein-R | 99.62 | |
| 2kvi_A | 96 | Nuclear polyadenylated RNA-binding protein 3; RNA- | 99.62 | |
| 3zzy_A | 130 | Polypyrimidine tract-binding protein 1; protein bi | 99.62 | |
| 2e5i_A | 124 | Heterogeneous nuclear ribonucleoprotein L-like; RR | 99.62 | |
| 2dgu_A | 103 | Heterogeneous nuclear ribonucleoprotein Q; RRM dom | 99.62 | |
| 2f3j_A | 177 | RNA and export factor binding protein 2; RRM domai | 99.62 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 3d2w_A | 89 | TAR DNA-binding protein 43; DP-43 proteinopathy, T | 99.62 | |
| 2diu_A | 96 | KIAA0430 protein; structural genomics, RRM domain, | 99.62 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.61 | |
| 1x5p_A | 97 | Negative elongation factor E; structure genomics, | 99.61 | |
| 2ytc_A | 85 | PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 1sjr_A | 164 | Polypyrimidine tract-binding protein 1; extended b | 99.61 | |
| 1wg1_A | 88 | KIAA1579 protein, homolog EXC-7; RBD, structural g | 99.61 | |
| 2i2y_A | 150 | Fusion protein consists of immunoglobin G- binding | 99.61 | |
| 3egn_A | 143 | RNA-binding protein 40; RNA recognition motif (RRM | 99.6 | |
| 2pe8_A | 105 | Splicing factor 45; RRM, protein binding; 2.00A {H | 99.6 | |
| 2e44_A | 96 | Insulin-like growth factor 2 mRNA binding protein | 99.6 | |
| 2cqh_A | 93 | IGF-II mRNA-binding protein 2 isoform A; RNA recog | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 2dnl_A | 114 | Cytoplasmic polyadenylation element binding protei | 99.59 | |
| 1wf1_A | 110 | RNA-binding protein RALY; structural genomics, RRM | 99.59 | |
| 2e5g_A | 94 | U6 snRNA-specific terminal uridylyltransferase 1; | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 3pgw_S | 437 | U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.57 | |
| 2hzc_A | 87 | Splicing factor U2AF 65 kDa subunit; RNA splicing, | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.56 | |
| 3beg_B | 115 | Splicing factor, arginine/serine-rich 1; kinase, S | 99.56 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.56 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.56 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.55 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 99.55 | |
| 2bz2_A | 121 | Negative elongation factor E; NELF E, RNA recognit | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.53 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.53 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.53 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.52 | |
| 1wf0_A | 88 | TDP-43, TAR DNA-binding protein-43; structural gen | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 3u1l_A | 240 | PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 2voo_A | 193 | Lupus LA protein; RNA-binding protein, RNA recogni | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.5 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.49 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.49 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.49 | |
| 1jmt_A | 104 | Splicing factor U2AF 35 kDa subunit; RRM, RNA spli | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3v4m_A | 105 | Splicing factor U2AF 65 kDa subunit; canonical RNA | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.45 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.45 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 2dit_A | 112 | HIV TAT specific factor 1 variant; structural geno | 99.42 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.41 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 99.41 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 99.41 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3ue2_A | 118 | Poly(U)-binding-splicing factor PUF60; RNA recogni | 99.4 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.39 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.37 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 99.31 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 2d9o_A | 100 | DNAJ (HSP40) homolog, subfamily C, member 17; RRM | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.28 | |
| 3tht_A | 345 | Alkylated DNA repair protein ALKB homolog 8; struc | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 3s6e_A | 114 | RNA-binding protein 39; ferredoxin-like, structura | 99.22 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 2dnr_A | 91 | Synaptojanin-1; RRM domain, RBD, structural genomi | 99.18 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.1 | |
| 1owx_A | 121 | Lupus LA protein, SS-B, LA; RRM, transcription; NM | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.07 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.06 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.02 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.01 | |
| 1ufw_A | 95 | Synaptojanin 2; RNP domain, structural genomics, r | 99.01 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.0 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.82 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 98.79 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.68 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.66 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.62 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.62 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.43 | |
| 2l9w_A | 117 | U4/U6 snRNA-associated-splicing factor PRP24; RRM, | 98.42 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.38 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.35 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.23 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.21 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.21 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.19 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.13 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.12 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.1 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.06 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.98 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.84 | |
| 1wey_A | 104 | Calcipressin 1; structural genomics, RRM domain, r | 97.83 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.67 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.48 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.41 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.29 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.95 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.94 | |
| 1whv_A | 100 | Poly(A)-specific ribonuclease; RNA recognition mot | 96.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.88 | |
| 2dhx_A | 104 | Poly (ADP-ribose) polymerase family, member 10 var | 96.69 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.64 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.54 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.53 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.42 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.37 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.37 | |
| 1wwh_A | 119 | Nucleoporin 35, nucleoporin; structural genomics, | 96.34 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.34 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.32 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.28 | |
| 1uw4_A | 91 | UPF3X; nonsense mediated mRNA decay protein, RNA-b | 96.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.16 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.01 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.9 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.69 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.56 | |
| 3ctr_A | 101 | Poly(A)-specific ribonuclease PARN; protein-RNA-co | 95.25 | |
| 3pq1_A | 464 | Poly(A) RNA polymerase; nucleotidyl transferase, R | 95.08 | |
| 3p3d_A | 132 | Nucleoporin 53; structural genomics, PSI-2, protei | 94.97 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.73 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.36 | |
| 2kn4_A | 158 | Immunoglobulin G-binding protein G, splicing FACT | 94.13 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.98 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.8 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.41 | |
| 2l08_A | 97 | Regulator of nonsense transcripts 3A; NESG, nonsen | 92.8 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.72 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.59 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.9 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.77 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.64 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.52 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.35 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.32 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.12 | |
| 2i2y_A | 150 | Fusion protein consists of immunoglobin G- binding | 89.66 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.3 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.81 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.43 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.4 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.56 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.49 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.36 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.01 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.37 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.46 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.96 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=374.40 Aligned_cols=471 Identities=11% Similarity=0.028 Sum_probs=308.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|+.+|+++... ..+..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 35677899999999999999999999999865 568899999999999999999999999998653 56899999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC---------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH---------------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDI 438 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 438 (779)
.+|.+.|++++|+++|+++.... ...+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 99999999999999999633221 12257899999999999999999999999999875 335555
Q ss_pred HHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 439 YHMMMDGYTIIGNEEKCLI--V-FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLING 515 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~--~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 515 (779)
+..+...+...+..+.+.. + +..+...+......+|+.++..|.+.|++++|.++|+++.+. ..+..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 5555544332222221111 1 233333222223344455555666666666666666665543 3456666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHH
Q 004006 516 FLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595 (779)
Q Consensus 516 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 595 (779)
|.+.|++++|+.+|+++.+.+.. +..++..++.+|.+.|++++|..+++++...... +..++..++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHH
Confidence 66666666666666666654433 4455666666666666666666666666544332 455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 675 (779)
.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|+++|+++.+.
T Consensus 393 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666554332 45566666666666666666666666666543 335556666666666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004006 676 GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ----KIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (779)
Q Consensus 676 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (779)
. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++++++.+.+ ..
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 3 335566666666666666666666666666543 33444 4566666666666666666666666666542 22
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 750 DVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 750 d~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+..+|..++.+|...|++++|.++|+++
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666666666666666666666553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=363.03 Aligned_cols=476 Identities=11% Similarity=0.046 Sum_probs=407.1
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
|.+.|++ +.|...|++++..+| +..++..++.+|.+.|++++|+.+|+++...
T Consensus 94 ~~~~g~~---------~~A~~~~~~~~~~~p----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 146 (597)
T 2xpi_A 94 ALMQQQY---------KCAAFVGEKVLDITG----------------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-- 146 (597)
T ss_dssp HHHTTCH---------HHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--
T ss_pred HHHccCc---------hHHHHHHHHHHhhCC----------------CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--
Confidence 7778888 999999999987665 4567788999999999999999999998654
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc---------------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE---------------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (779)
.++..+++.++.+|.+.|++++|+++|+++... |...+..+|+.++.+|.+.|++++|+++|+++
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 568899999999999999999999999954322 22345889999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChHHHHH--H-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004006 393 KERHATLNAIIYGNIIYAQCQTRNMERAEA--L-VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP 469 (779)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 469 (779)
.+.++. +...+..++..+...+..+.+.. + +..+...+......+|+.++..|.+.|++++|+++|+++.+. .+
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 988654 66677777666554433332221 1 455554444444556777788999999999999999998875 46
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..++..++.+|.+.|++++|..+|+++.+... .+..+|+.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHH
Confidence 89999999999999999999999999999865 33778899999999999999999999999987644 37889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 550 AFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEK 629 (779)
Q Consensus 550 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 629 (779)
+|.+.|++++|.++|+++...... +..+|..++.+|.+.|++++|+++|+++.+.+.. +..+|+.++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999987554 6779999999999999999999999999987653 78899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCChHHHHHH
Q 004006 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GLELD--VFTYEALLKACCKSGRMQSALAV 703 (779)
Q Consensus 630 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 703 (779)
|+++|+++.+.. ..+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999765 457899999999999999999999999999876 65677 78999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 004006 704 TKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP-DVHTYTSFINAC 761 (779)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l~~a~ 761 (779)
++++.+.+ +.+..+|..++.+|.+.|++++|.++++++.+. .| +...+..+..+|
T Consensus 539 ~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 539 LNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 99998876 668999999999999999999999999999985 44 456666666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-28 Score=256.39 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=76.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
...+.+.|++++|+..|+.+.+... .+...+..+...+...|++++|..+++..++.. +.+..+|..++..|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4445555555555555555555421 133344444455555555555555555555442 22455555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
++|+..|+++.+..+. +..+|..++.++.+.|++++|++.|+++.+.+ +.+...+..+...+...|++++|++.|+++
T Consensus 84 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555554322 34445555555555555555555555554432 222333333444444444444444444444
Q ss_pred HH
Q 004006 463 KE 464 (779)
Q Consensus 463 ~~ 464 (779)
.+
T Consensus 162 l~ 163 (388)
T 1w3b_A 162 IE 163 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-28 Score=255.40 Aligned_cols=384 Identities=14% Similarity=0.047 Sum_probs=341.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (779)
+...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|..+++.+.+..+. +..+|..++.+|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 4566778999999999999998874 336778888999999999999999999999987544 88899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+++|++.|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.... +...+..+...+...|++++|.++|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999874 456778999999999999999999999999986432 456778889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc
Q 004006 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS 576 (779)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 576 (779)
+.+.. +.+..+|..+...|...|++++|+..|+++.+.+.. +...|..+...+...|++++|+..|+++....+. +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 98864 336789999999999999999999999999987654 6788999999999999999999999999987655 67
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 577 RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY 656 (779)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 656 (779)
.++..+..+|.+.|++++|+..|+++.+.... +..+|..+...+.+.|++++|+.+|+++++.. +.+..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 78889999999999999999999999987654 67889999999999999999999999999874 56788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004006 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (779)
Q Consensus 657 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (779)
...|++++|..+++++++.. +.+..++..++.+|.+.|++++|...++++.+.. +.+...|..+...+...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 99999999999999999874 5578899999999999999999999999999865 6678899999999888764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=263.38 Aligned_cols=203 Identities=16% Similarity=0.252 Sum_probs=134.7
Q ss_pred HHHHHHHHcCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHH
Q 004006 562 HIVKEMQKERHRPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ---------MEKAI 631 (779)
Q Consensus 562 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~A~ 631 (779)
.+.+++.+.+.... ...++.+|++|++.|++++|+++|++|.+.|+.||..+||.||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 33444444443322 223555666666666666666666666666666666666666666655433 56677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 632 EILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 632 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004006 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCS 764 (779)
Q Consensus 712 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~ 764 (779)
+.||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777777777766653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=252.44 Aligned_cols=204 Identities=14% Similarity=0.181 Sum_probs=129.5
Q ss_pred HHHHHHHHHHCCCCCCH-hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC---------HHH
Q 004006 315 ARQTFENMRARGIEPTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN---------AEA 384 (779)
Q Consensus 315 A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~---------~~~ 384 (779)
+..+.+++.+++..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455666666555443 35778888888888888888888888888888888888888888877654 455
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
|.++|++|.+.|..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 465 CGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (779)
Q Consensus 465 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (779)
.|+.||..+|+.||.+|++.|+.++|.++|++|++.+..|+..||+.++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666665543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-24 Score=239.82 Aligned_cols=440 Identities=10% Similarity=-0.058 Sum_probs=309.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+...|.+.|++++|+..|+++.+.+ |+..+|..+..+|.+.|++++|+..|+++++.+. .+..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 3456778899999999999999999999874 6899999999999999999999999999998753 367899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH---HHHHhcCCH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM---DGYTIIGNE 452 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~ 452 (779)
|.+.|++++|+..|+++...+.. +......++..+........+.+.+..+...+..++...+.... .........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999988643 44444455554444433344443333322221111111000000 000011111
Q ss_pred HHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 004006 453 EKCLIVFERLKEC------GFSPSIISYGCLINLYTK---IGKVSKALEVSKVMKS-----SGI--------KHNMKTYS 510 (779)
Q Consensus 453 ~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~~~~~~~~ 510 (779)
..+...+...... .-..+...+..+...+.. .|++++|+.+|+++.+ ... ..+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111100000 001123344444444444 7888888888888877 311 12345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 004006 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (779)
.+...|...|++++|..+|+++.+.... ...+..+..++...|++++|+..++++...... +...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 7788888888888888888888876544 777888888888888888888888888877554 5667778888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 591 EMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT 670 (779)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 670 (779)
++++|+..|+++.+.... +...+..+...|...|++++|+.+++++.+.. +.+...+..+...|...|++++|..+++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888876544 56778888888888888999988888887653 3456778888888888899999998888
Q ss_pred HHHHcCCC-CC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 671 KLRNEGLE-LD----VFTYEALLKACCK---SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 671 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
++.+.... ++ ...+..++.+|.. .|++++|...++++.+.. +.+...+..++.+|.+.|++++|.++++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88765321 11 3477888888888 888999999998888765 567778888888899999999999999988
Q ss_pred HHc
Q 004006 743 KQE 745 (779)
Q Consensus 743 ~~~ 745 (779)
.+.
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=238.24 Aligned_cols=436 Identities=9% Similarity=-0.040 Sum_probs=328.2
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...+..+...+.+.|++++|+..|+++++.+ |+..+|..++.+|.+.|++++|+..|+++.+.++. +..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 3567777888999999999999999999875 68999999999999999999999999999988654 77899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004006 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 490 (779)
|.+.|++++|+..|+++.+.+ +.+......++..+........+.+.+..+...+..++...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999876 3444555555555554444444444443332222111111111111111111111111
Q ss_pred HHHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----C--CC------CCCHHHHH
Q 004006 491 LEVSKVMKSSGI---------KHNMKTYSMLINGFLK---LKDWANVFAVFEDVMR-----D--GL------KPDVVLYN 545 (779)
Q Consensus 491 ~~~~~~m~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--g~------~~~~~~~~ 545 (779)
..+...+..... ..+...+..+...+.. .|++++|+.+|+++.+ . .. ..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111111 1124455555555554 8999999999999988 3 11 11356788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004006 546 NIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKR 625 (779)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 625 (779)
.+...+...|++++|..+|+++...... ...+..+...|...|++++|+..++++.+.... +...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 8899999999999999999999988655 778888999999999999999999999987544 6778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004006 626 QMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTK 705 (779)
Q Consensus 626 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (779)
++++|+..|+++.+.. +.+...+..+...|...|++++|+.+++++.+.. +.+..++..++.+|...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999875 4466788999999999999999999999999875 4467789999999999999999999999
Q ss_pred HHHhCCCCCC------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 706 EMSAQKIPRN------TFVYNILIDGWAR---RGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 706 ~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
++.+.. +.+ ...|..++.++.+ .|++++|.++++++.+.. ..+..++..+..+|...|++++|.++|++
T Consensus 397 ~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 397 LAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 987643 122 3488999999999 999999999999999853 33577889999999999999999999986
Q ss_pred h
Q 004006 777 A 777 (779)
Q Consensus 777 m 777 (779)
.
T Consensus 475 a 475 (514)
T 2gw1_A 475 S 475 (514)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-23 Score=224.84 Aligned_cols=386 Identities=10% Similarity=0.070 Sum_probs=222.3
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..++..|.+.|++++|+.+|+++++.. +.+..+|..++.+|...|++++|+..|+++.+.+.. +..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 44455555566666666666666666655542 224555555666666666666666666665555333 4555555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPI---DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
+|.+.|++++|+++|+++.+.+ +.+. ..+..++..+.. ..+..+...+.+.|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 5555555555555555555442 1112 222322222111 112233445667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004006 487 VSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKE 566 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (779)
+++|+.+|+++.+.. +.+...+..+..+|.+.|++++|+.+|+++.+.... +..+|..++.+|...|++++|+..|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776643 235666777777777777777777777777665332 566677777777777777777777777
Q ss_pred HHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 004006 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN- 645 (779)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~- 645 (779)
+...... +...+..+.. +. ....+..++..|.+.|++++|+.+|+++++.. |+
T Consensus 237 ~~~~~p~-~~~~~~~~~~-----------------~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~ 290 (450)
T 2y4t_A 237 CLKLDQD-HKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSI 290 (450)
T ss_dssp HHHHCTT-CHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSS
T ss_pred HHHhCCC-hHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Ccc
Confidence 7655332 2222222100 00 00112223556666677777777777766542 33
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004006 646 ----EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721 (779)
Q Consensus 646 ----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (779)
...|..+..++.+.|++++|+.+++++++.. +.+..+|..++.+|...|++++|...++++.+.. +.+...+..
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 368 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREG 368 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 3356666667777777777777777776653 3456677777777777777777777777776653 444555555
Q ss_pred HHHH------------HHhcC-----CHHHHHHHHHHH-HHcCCCCC-----------HHHHHHHHHHHHhcCCcchHHH
Q 004006 722 LIDG------------WARRG-----DVWEAADLMQQM-KQEGVQPD-----------VHTYTSFINACKCSKSNQRNGR 772 (779)
Q Consensus 722 l~~~------------~~~~g-----~~~~A~~~~~~m-~~~g~~pd-----------~~~~~~l~~a~~~~g~~~~a~~ 772 (779)
+..+ |...| +.+++.+.++++ ++ ..|| ...+..+..+|...|+.++..+
T Consensus 369 l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 369 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 5532 33334 566778888763 33 2332 2367788889999988887654
Q ss_pred h
Q 004006 773 S 773 (779)
Q Consensus 773 ~ 773 (779)
+
T Consensus 447 y 447 (450)
T 2y4t_A 447 F 447 (450)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=233.30 Aligned_cols=434 Identities=10% Similarity=0.037 Sum_probs=317.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+...+.+.|++++|+..|+++++... .+..+|..+..+|.+.|++++|++.|+++++.+. .+..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 45677889999999999999999999998753 3788999999999999999999999999998753 378899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG--IDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
|...|++++|+..|+ ....... .....+..+...+...+|...++++.... ...........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGD----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999997 4333222 22223445556667788999998886641 0111112234445556666666
Q ss_pred HHHHHHHHHHHCCCCCCHh-hHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSII-SYGCLINLYT--------KIGKVSKALEVSKVMKSSGIKHN-------MKTYSMLINGFL 517 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~ll~~~~ 517 (779)
.+...+...... .+... ....+...+. ..|++++|..+++++.+... .+ ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHH
Confidence 655544433221 11111 2222222221 22578888888888877532 12 234666667788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 004006 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALE 597 (779)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 597 (779)
..|++++|...|+++.+.. |+...+..+...+...|++++|+..|+++...... +..++..+...+...|++++|+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 8899999999999888864 44778888888888999999999999988887654 66778888888899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 004006 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG- 676 (779)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 676 (779)
.|+++.+.... +...|..+...|...|++++|+.+|+++.+.. +.+...+..+...|...|++++|...|+++++..
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99988876544 56778888888999999999999999888764 4456788888888999999999999999887642
Q ss_pred ----CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 677 ----LELDVFTYEALLKACCKS----------GRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (779)
Q Consensus 677 ----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (779)
.......+..+..++... |++++|...++++.+.. +.+...+..++.+|.+.|++++|.++|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 112223345556677777 89999999999888765 567788889999999999999999999998
Q ss_pred HHc
Q 004006 743 KQE 745 (779)
Q Consensus 743 ~~~ 745 (779)
.+.
T Consensus 489 l~~ 491 (537)
T 3fp2_A 489 AIL 491 (537)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-23 Score=221.63 Aligned_cols=317 Identities=10% Similarity=0.070 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 004006 265 WHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG 344 (779)
Q Consensus 265 ~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (779)
.+...|.+++..+|. +...+..++..|.+.|++++|+.+|+++.+.. ..+..+|..+..+|...
T Consensus 10 ~~~~~~~~~~~~~p~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~ 73 (450)
T 2y4t_A 10 GVDLGTENLYFQSMA---------------DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM 73 (450)
T ss_dssp -------------CH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccHH---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHC
Confidence 445555666666664 56778889999999999999999999999874 34788999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh---hhHHHHH------------H
Q 004006 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA---IIYGNII------------Y 409 (779)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~------------~ 409 (779)
|++++|+..|+++++.+. .+..++..++.+|.+.|++++|+.+|+++.+.... +. ..+..++ .
T Consensus 74 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 151 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQAL 151 (450)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999753 36889999999999999999999999999987543 44 5555553 3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
.+.+.|++++|+++|+++.+.. +.+..++..++.+|...|++++|+.+|+++.+... .+..+|..++.+|...|++++
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 3666666677776666666653 34555666666666666666666666666655421 245566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 004006 490 ALEVSKVMKSSGIKHNMKTYSML------------INGFLKLKDWANVFAVFEDVMRDGLKPD----VVLYNNIIRAFCG 553 (779)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~ 553 (779)
|+..|+++.+.. +.+...+..+ ...|.+.|++++|+.+|+++.+.... + ...+..+..++.+
T Consensus 230 A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHH
Confidence 666666665542 1123333332 44444445555555555554443211 1 1234444444444
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 554 MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 554 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
.|++++|+..++++...... +...|..+..+|...|++++|...|+++.+
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444443222 334444444444444444444444444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-22 Score=223.93 Aligned_cols=431 Identities=9% Similarity=-0.025 Sum_probs=331.4
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...|..+...+.+.|++++|++.|+++++... .+..+|..++.+|.+.|++++|++.|+++.+.++. +..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 35677888899999999999999999998753 47899999999999999999999999999998655 78899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHHcCCHH
Q 004006 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF--SPSIISYGCLINLYTKIGKVS 488 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~ 488 (779)
|...|++++|++.|+ ..... ++ .....+..+...+....|+..++++..... ..........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 33322 21 122234455556667888999988865310 111122234455566677777
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHH
Q 004006 489 KALEVSKVMKSSGIKHNMK-TYSMLINGFLK--------LKDWANVFAVFEDVMRDGLKPD-------VVLYNNIIRAFC 552 (779)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~g~~~~-------~~~~~~l~~~~~ 552 (779)
.+...+...... .+... ....+...+.. .+++++|+.+|+++.+.... + ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 766655443322 22222 33333333322 25889999999999876443 3 235667778889
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 553 GMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIE 632 (779)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 632 (779)
..|++++|...|+++...... ...+..+...|...|++++|+..|+++.+.... +..+|..+...+...|++++|+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999987544 677888889999999999999999999987654 78899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-
Q 004006 633 ILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK- 711 (779)
Q Consensus 633 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 711 (779)
.|+++.+.. +.+...|..+..+|...|++++|..+++++.+.. +.+..++..+..+|...|++++|...++++.+..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999998765 3456789999999999999999999999999885 5567789999999999999999999999987532
Q ss_pred ----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhhh
Q 004006 712 ----IPRNTFVYNILIDGWARR----------GDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 712 ----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
.......+..+..++.+. |++++|+.+++++.+.. ..+...+..+..+|...|+.++|.++|++.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 112233455667788888 99999999999999853 335788999999999999999999999864
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-18 Score=187.95 Aligned_cols=364 Identities=13% Similarity=0.099 Sum_probs=264.4
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHH
Q 004006 315 ARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAAD 386 (779)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~ 386 (779)
++..+....+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 456666666654 66777778877777 788888888888887764 66778888888887 78888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIV 458 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 458 (779)
.+|++..+.+ +...+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|+++
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888887764 66777778888877 778888888888887765 56677777777776 7788888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004006 459 FERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFE 530 (779)
Q Consensus 459 ~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 530 (779)
|++..+.| +...+..|..+|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88887764 56777777777777 778888888888877754 55667777777765 678888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc-----CCHHHHHHHHHH
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCG----MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA-----GEMKRALEIFDM 601 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~ 601 (779)
+..+.| +...+..+..+|.. .++.++|+.+|++..+.+ +...+..|...|... +++++|+..|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 777653 45566666677766 677778888887777654 344555666666665 777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004006 602 MRRSGCIPTVHTFNALILGLVEKR---QMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFTKLRN 674 (779)
Q Consensus 602 ~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 674 (779)
..+.+ +...+..|...|...| ++++|+.+|++..+.+ +...+..|...|.. .+++++|+.+|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 77654 4556666666666655 6677777777777653 56666777777776 6777777777777777
Q ss_pred cCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 004006 675 EGLELDVFTYEALLKACCK----SGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 711 (779)
.+ +...+..|..+|.. .+++++|...|++..+.+
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 45666777777776 677777777777777654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-18 Score=184.92 Aligned_cols=353 Identities=14% Similarity=0.085 Sum_probs=263.5
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCC
Q 004006 294 PSRREFGLMVNYYAR----RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMS 365 (779)
Q Consensus 294 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~ 365 (779)
-+...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+++|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 366777777777777 778888888888887764 56777777777777 778888888888887765 6
Q ss_pred HhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChh
Q 004006 366 LVTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPID 437 (779)
Q Consensus 366 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 437 (779)
...+..|..+|.. .+++++|+.+|++..+.+ +...+..|..+|.. .+++++|++.|++..+.+ +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6777777777777 678888888888887764 56777777777776 678888888888887764 567
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004006 438 IYHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTY 509 (779)
Q Consensus 438 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (779)
.+..+...|.. .++.++|+++|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 77777777777 788888888888877764 55667777777776 678888888888877654 45666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCCCcccHH
Q 004006 510 SMLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM-----GNMDRAIHIVKEMQKERHRPTSRTFM 580 (779)
Q Consensus 510 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~ 580 (779)
..+...|.. .++.++|+.+|++..+.| +...+..+..+|... ++.++|+.+|++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 667777776 778888888888877653 456666777777776 78888888888877764 345566
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 581 PIIHGFARAG---EMKRALEIFDMMRRSGCIPTVHTFNALILGLVE----KRQMEKAIEILDEMTLAGISPNEHTYTTIM 653 (779)
Q Consensus 581 ~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 653 (779)
.+...|.+.| ++++|+..|++..+.+ +...+..|...|.. .+++++|+..|++..+.+ +...+..|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666666655 6778888888887753 56777777777777 678888888888877754 466777777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcC
Q 004006 654 HGYAS----LGDTGKAFEYFTKLRNEG 676 (779)
Q Consensus 654 ~~~~~----~g~~~~a~~~~~~~~~~~ 676 (779)
..|.. .++.++|...|++..+.+
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 77776 778888888888888765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-19 Score=186.36 Aligned_cols=332 Identities=10% Similarity=0.054 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...+.+.|++++|+..|+++.+... .+..++..+..++...|++++|+..|+++++... -+...+..++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 45677788899999999999999999988743 3677888899999999999999999999988643 367888999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCC--CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHAT--LNAIIYGNI------------IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 441 (779)
|...|++++|+..|+++.+.... .+...+..+ +..+...|++++|+++|+++.+.. +.+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999999876431 144444444 344455555555555555555442 233444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (779)
+...+...|++++|+..++++.+... .+..++..+..+|...|++++|...|+++.+.. +.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~-------- 229 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK-------- 229 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH--------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH--------
Confidence 55555555555555555555544321 134444445555555555555555555444432 11111111110
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHhcCCHHHHHH
Q 004006 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRALE 597 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 597 (779)
.+. .......+...+.+.|++++|...++++...... +. ..+..+..++.+.|++++|+.
T Consensus 230 ---------~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 230 ---------QVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp ---------HHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------HHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 000 0001112355567777777777777777765433 22 123446667777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658 (779)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 658 (779)
.++++.+.... +...|..+...|...|++++|...|+++++.. +.+...+..+..+...
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 88777775432 56777777777888888888888888777653 3345555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-19 Score=184.79 Aligned_cols=343 Identities=11% Similarity=0.020 Sum_probs=186.2
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 444 (779)
|...+..++..+...|++++|+..|+++.+..+. +..++..++.+|...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4556777777777888888888888877776543 66777777777777777777777777777663 335566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 445 GYTIIGNEEKCLIVFERLKECGFS--PSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDW 522 (779)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 522 (779)
.|...|++++|+..|+++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777664210 02222222211100 01122234455556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMM 602 (779)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 602 (779)
++|+.+|+++.+.... +...+..+..++...|++++|+..++++...... +...+..+...+...|++++|...|+++
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666665554332 4455555555666666666666666655554333 4445555555555556666666555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 004006 603 RRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV- 681 (779)
Q Consensus 603 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 681 (779)
.+.... +...+..+... . .......+...+.+.|++++|..+++++.+.... +.
T Consensus 215 ~~~~~~-~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 269 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAE 269 (359)
T ss_dssp HHHCTT-CHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred HhhCcc-chHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chH
Confidence 544322 22222111000 0 0001112234455555555555555555554311 22
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004006 682 ---FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSF 757 (779)
Q Consensus 682 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l 757 (779)
..+..+..+|...|++++|..+++++.+.. +.+...|..++.+|.+.|++++|.+.++++.+. .|+ ...+..+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 346 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 123345555566666666666666655543 345555666666666666666666666666553 333 3344444
Q ss_pred HHHHH
Q 004006 758 INACK 762 (779)
Q Consensus 758 ~~a~~ 762 (779)
..+..
T Consensus 347 ~~~~~ 351 (359)
T 3ieg_A 347 EKAQR 351 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-17 Score=180.24 Aligned_cols=420 Identities=10% Similarity=0.052 Sum_probs=267.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..++. +.+.|++++|+.+|+++++.. ..+...|..++..+.+.|++++|.++|+++++.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6667777776 366777777777777777653 3355677777777777777777777777777652 46666666664
Q ss_pred HH-HccCCHHHHHH----HHHHHHHc-CCC-CChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCChhh
Q 004006 375 GF-AKMGNAEAADH----WFEEAKER-HAT-LNAIIYGNIIYAQCQ---------TRNMERAEALVRDMEEEGIDAPIDI 438 (779)
Q Consensus 375 ~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~ 438 (779)
.. ...|++++|.+ +|+++... |.. .+...|...+....+ .|++++|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34566655544 66655542 222 244566666555443 5666667777766665210000112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH------HCC---CCCC----
Q 004006 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMK------SSG---IKHN---- 505 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~---~~~~---- 505 (779)
|..........|. .+...++. .+.++++.|..+++.+. +.. +.|+
T Consensus 168 ~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2211111111110 00011110 12344566666655421 111 2332
Q ss_pred ----HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------CCCHH-------H
Q 004006 506 ----MKTYSMLINGFLKL----KDW----ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG-------MGNMD-------R 559 (779)
Q Consensus 506 ----~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------~g~~~-------~ 559 (779)
...|...+...... ++. +.+..+|++++..... +...|..++..+.+ .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 23454444333221 222 4677888888776333 67788888887765 78876 8
Q ss_pred HHHHHHHHHH-cCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 560 AIHIVKEMQK-ERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT-VHTFNALILGLVEKRQMEKAIEILDEM 637 (779)
Q Consensus 560 A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (779)
|..+|++... ..+. +...|..++..+.+.|++++|..+|+++++.... + ...|..++..+.+.|++++|..+|++.
T Consensus 305 A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8999998886 3332 5677888888888899999999999999886432 3 357888888888889999999999998
Q ss_pred HHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCC-
Q 004006 638 TLAGISPNEHTYTTIMHG-YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK-IPR- 714 (779)
Q Consensus 638 ~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~- 714 (779)
++.. +.+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++...+ ..|
T Consensus 383 l~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred Hhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 8753 2233333332222 345889999999999988764 4578888899999989999999999999988763 122
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 715 -NTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 715 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
....|...+......|+.+.+.++++++.+.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2447888888888899999999999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-16 Score=177.89 Aligned_cols=422 Identities=12% Similarity=0.087 Sum_probs=318.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
.-++......++.|+..|.+.+|+++++++.-.+- .-+....+.++....+. +..+..+..+++... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 34667778889999999999999999999984421 12345667777776666 566666666655421 1 34
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
.++..+...|.+++|..+|++... .......+ +-..+++++|.++.++. .+..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 488888999999999999999631 22222222 23778999999998865 24778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 451 NEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (779)
Q Consensus 451 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (779)
++++|+..|.+. -|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999764 377888899999999999999999999888754 33333445889999999988644432
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 610 (779)
+ .++...|..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++.. +
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 2 235667778999999999999999999985 378999999999999999999999872 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
..+|..+..+|...|++..|..+...+ ..+...+..++..|.+.|.+++|+.+++..+... +.....|..|...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 789999999999999999998876643 3456677899999999999999999999888765 5566677777777
Q ss_pred HHHc--CChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHcCCCC
Q 004006 691 CCKS--GRMQSALAVTKEMSAQKIPR------NTFVYNILIDGWARRGDVWEAADLM-------------QQMKQEGVQP 749 (779)
Q Consensus 691 ~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~m~~~g~~p 749 (779)
|++. +++.++.++|..-.. +++ +...|.-++-.|.+.|+++.|...+ +..+. -..
T Consensus 1324 yaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~ 1399 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVA 1399 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccc
Confidence 7764 456666666664332 233 5677899999999999999988322 22221 234
Q ss_pred CHHHHHHHHHHHHhcC---------------CcchHHHhHhh
Q 004006 750 DVHTYTSFINACKCSK---------------SNQRNGRSWSE 776 (779)
Q Consensus 750 d~~~~~~l~~a~~~~g---------------~~~~a~~~~~~ 776 (779)
|...|...+.-|...+ +.+++.++++.
T Consensus 1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 6667777777666666 77777777663
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-18 Score=178.06 Aligned_cols=269 Identities=9% Similarity=0.022 Sum_probs=124.3
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..++..+...|++++|+++|+++++... .+...+..++..+.+.|++++|+.+|+++.+.... +..+|..++.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 334444455555555555555555555554431 23444444555555555555555555555554322 4445555555
Q ss_pred HHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 004006 410 AQCQTR-NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS 488 (779)
Q Consensus 410 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 488 (779)
+|...| ++++|++.|+++.+.+ +.+...|..+...|...|++++|+..|+++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 5555555555555442 223444455555555555555555555555443211 2333444555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhCCCHHHH
Q 004006 489 KALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG--------LKPDVVLYNNIIRAFCGMGNMDRA 560 (779)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--------~~~~~~~~~~l~~~~~~~g~~~~A 560 (779)
+|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. ...+..++..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555554432 2234444444455555555555555554444321 011223444444444444444444
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 561 IHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604 (779)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 604 (779)
+..|+++...... +...+..+...|.+.|++++|...|+++.+
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 4444444443322 333334444444444444444444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-18 Score=177.40 Aligned_cols=285 Identities=10% Similarity=-0.000 Sum_probs=137.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 435 PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (779)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (779)
+...+..++..+...|++++|+.+|+++.+... .+...+..++..+...|++++|..+++++.+.. +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 334444445555555555555555555544321 133344444455555555555555555554432 123444444555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 004006 515 GFLKLK-DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMK 593 (779)
Q Consensus 515 ~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (779)
.|...| ++++|...|+++.+.... +...|..+..++...|++++|+..|+++...... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 555555555555543322 3344555555555555555555555555544332 3334444555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 004006 594 RALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG--------ISPNEHTYTTIMHGYASLGDTGKA 665 (779)
Q Consensus 594 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a 665 (779)
+|+..++++.+.... +...+..+...+...|++++|+.+++++.+.. ...+..+|..+..+|...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 555555555544322 44555555555555555555555555554321 011223444455555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
+..++++++.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..++
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55555554443 2234444445555555555555555555444433 33444444444444
|
| >4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=155.43 Aligned_cols=83 Identities=19% Similarity=0.440 Sum_probs=79.4
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..++++|||||||+++|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..++|++|+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~gr~l~ 92 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD-KVAGHSLGYGFVNYVTAKDAERAINTL--NGLRLQSKTIK 92 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-SSSCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeec-CCCCcccccEEEEECCHHHHHHHHHHh--CCCEECCEEEE
Confidence 456679999999999999999999999999999999999 889999999999999999999999999 99999999999
Q ss_pred EEecCC
Q 004006 228 VKLDDG 233 (779)
Q Consensus 228 v~~~~~ 233 (779)
|++|+|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999976
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-17 Score=179.30 Aligned_cols=402 Identities=11% Similarity=0.082 Sum_probs=273.8
Q ss_pred cHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH-HccCChHHHHH---
Q 004006 280 NWQAVVSAFERIK---KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAY-AVGRDMEEALS--- 352 (779)
Q Consensus 280 ~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~--- 352 (779)
....+...|++.- +-+...|..++..+.+.|++++|+.+|+++++. .|+...|...+... ...|++++|.+
T Consensus 27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 3455555666542 346778999999999999999999999999987 46888888887644 45678877765
Q ss_pred -HHHHHHHc-CCCC-CHhHHHHHHHHHHc---------cCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHH
Q 004006 353 -CVRKMKEE-GIEM-SLVTYSIIVGGFAK---------MGNAEAADHWFEEAKERHATLN-AIIYGNIIYAQCQTRNMER 419 (779)
Q Consensus 353 -~~~~m~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 419 (779)
+|++.+.. |..+ +...|...+....+ .|++++|..+|+++++. +..+ ...|..........|. ..
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~-~~ 182 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINI-HL 182 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCH-HH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhch-hH
Confidence 77776653 4433 56788888877665 78999999999999883 2111 1233322221111110 00
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH------HCC---CCCC--------HhhHHHHHHHHH
Q 004006 420 AEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK------ECG---FSPS--------IISYGCLINLYT 482 (779)
Q Consensus 420 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~li~~~~ 482 (779)
+.. ++. ...+++..|..++..+. +.. +.|+ ...|...+....
T Consensus 183 ~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 183 AKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp HHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred HHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 111 110 12344555655555422 111 1222 234444444332
Q ss_pred Hc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCC
Q 004006 483 KI----GKV----SKALEVSKVMKSSGIKHNMKTYSMLINGFLK-------LKDWA-------NVFAVFEDVMRDGLKPD 540 (779)
Q Consensus 483 ~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~ 540 (779)
.. ++. +++..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.-..-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 22 222 36777888887753 3467788888877765 68876 88999999886212236
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (779)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 619 (779)
...|..++..+.+.|++++|..+|+++...... + ...|..++..+.+.|++++|+.+|++..+.... +...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHH
Confidence 788888999999999999999999999886433 2 247888888888899999999999999876432 3333333222
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHHcC
Q 004006 620 G-LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL-EL--DVFTYEALLKACCKSG 695 (779)
Q Consensus 620 ~-~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g 695 (779)
. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++++..+. .| ....|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999988753 34678888999999999999999999999998742 22 2557888888888899
Q ss_pred ChHHHHHHHHHHHhC
Q 004006 696 RMQSALAVTKEMSAQ 710 (779)
Q Consensus 696 ~~~~A~~~~~~~~~~ 710 (779)
+.+.+..+.+++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-19 Score=185.79 Aligned_cols=332 Identities=12% Similarity=0.019 Sum_probs=183.0
Q ss_pred HHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHCCCC-C--CHhhHHHHHHHHHccCChH
Q 004006 273 AVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ-TFENMRARGIE-P--TLHVYTNLIHAYAVGRDME 348 (779)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~ 348 (779)
.+..+...|..+...|+.+...+.. ++.-.|++++|+. .|++..+.... | +...+..+...+.+.|+++
T Consensus 9 ai~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 9 AIESDVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred hcccCcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 3344455566555555444322221 3445578888888 88876654221 1 3456788888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004006 349 EALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (779)
Q Consensus 349 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (779)
+|+.+|+++++.. +.+..++..++.+|.+.|++++|+..|+++.+.... +..++..++.+|...|++++|++.|+++.
T Consensus 82 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 82 NAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998874 337788888999999999999999999998887644 77888888889999999999999998888
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 004006 429 EEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH-NMK 507 (779)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~ 507 (779)
+.. +.+...+..+... .. .. . ....+..+...+ ..|++++|+.+|+++.+..... +..
T Consensus 160 ~~~-~~~~~~~~~~~~~-------~~-------~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 160 RYT-PAYAHLVTPAEEG-------AG-------GA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HTS-TTTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HhC-cCcHHHHHHHHHH-------hh-------hh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHH
Confidence 864 2222222211000 00 00 0 000111122222 5556666666666555542111 355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 004006 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA 587 (779)
Q Consensus 508 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (779)
++..+...|...|++++|+..|+++.+.... +..++..+..++...|++++|+..|+++...... +...+..+..+|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 5555666666666666666666665554322 4555666666666666666666666666555432 4455566666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 588 RAGEMKRALEIFDMMRRSGCIP----------TVHTFNALILGLVEKRQMEKAIEILDE 636 (779)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (779)
+.|++++|...|+++.+..... ...+|..+..+|...|++++|..++++
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6666666666666665432211 156667777777777777777666553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=180.92 Aligned_cols=305 Identities=9% Similarity=-0.004 Sum_probs=173.5
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 446 YTIIGNEEKCLI-VFERLKECGF---SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (779)
Q Consensus 446 ~~~~g~~~~a~~-~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (779)
+...|++++|+. .|++...... ..+...+..+...+.+.|++++|+.+|+++.+.. +.+...+..+..+|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344567777777 6665543321 1134567777888888888888888888888764 3466777788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDM 601 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 601 (779)
+++|+..|+++.+.... +..++..+..++...|++++|+..|+++...... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 88888888888776543 6777888888888888888888888888876543 22222111000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 602 MRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD 680 (779)
Q Consensus 602 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 680 (779)
.. . ....+..+. .+...|++++|+.+|+++.+..... +..++..+...|...|++++|+.+|+++++.. +.+
T Consensus 178 ~~----~-~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 GA----G-LGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hh----c-ccHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 00 0 000111111 2225555666666666555443111 35555566666666666666666666665543 334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------C
Q 004006 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP----------D 750 (779)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p----------d 750 (779)
..++..++.+|...|++++|...++++.+.. +.+...+..++.+|.+.|++++|...++++++..-.. .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 5566666666666666666666666665543 4455566666666666666666666666665431110 1
Q ss_pred HHHHHHHHHHHHhcCCcchHHHhHh
Q 004006 751 VHTYTSFINACKCSKSNQRNGRSWS 775 (779)
Q Consensus 751 ~~~~~~l~~a~~~~g~~~~a~~~~~ 775 (779)
..+|..+..+|...|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4566666666666666666666554
|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=151.78 Aligned_cols=84 Identities=14% Similarity=0.339 Sum_probs=79.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+||++++++++|+++|++||.|.+|+|++| +.||+++|||||+|.+.++|++|++.| ||..|+|+.|+|++
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d-~~tg~~rG~aFV~f~~~~~A~~Ai~~l--ng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLH-PRTRKHLGLARVLFTSTRGAKETVKNL--HLTSVMGNIIHAQL 82 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEC-CCCCceeeEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
+..+..+
T Consensus 83 a~~~~~~ 89 (110)
T 3s8s_A 83 DIKGQQR 89 (110)
T ss_dssp CSTTHHH
T ss_pred CCCCcHH
Confidence 9766433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-15 Score=172.21 Aligned_cols=380 Identities=10% Similarity=0.103 Sum_probs=288.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
--...+++|...|.+.+|++++++++-.+- .-+....+.|+.+..+. +..+..++.++.... ....++.+
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHH
Confidence 345667778888999999999999884321 12445666677766666 556666665555322 24457888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004006 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 490 (779)
+...|.+++|..+|++... .....+.+ +...+++++|.++.++.. +..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 8899999999999998631 11112222 337888999999988652 577888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004006 491 LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (779)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 570 (779)
++.|.+. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...++ .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999653 377888889999999999999999998877654 23333445888999999888644442 2
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004006 571 RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT 650 (779)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 650 (779)
.++...|..+...|...|++++|..+|..+ ..|..+...|++.|++++|++.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 234556777889999999999999999985 37889999999999999999999876 3568999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR- 729 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 729 (779)
.+..+|...|++..|..+... +..+...+..++..|.+.|.+++|+.+++.....+ +-+...|+-|..+|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 999999999999988887654 23466678899999999999999999999888765 55667788888888775
Q ss_pred -CCHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHhcCCcchHHH
Q 004006 730 -GDVWEAADLMQQMKQEGVQ------PDVHTYTSFINACKCSKSNQRNGR 772 (779)
Q Consensus 730 -g~~~~A~~~~~~m~~~g~~------pd~~~~~~l~~a~~~~g~~~~a~~ 772 (779)
++..++.++|..-.. +. -+...|.-++-.|.+.|++++|..
T Consensus 1329 peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 466677777764432 22 256789999999999999999983
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=180.52 Aligned_cols=236 Identities=8% Similarity=-0.066 Sum_probs=153.9
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...|..+...+.+.|++++|+.+|+++++... .+..+|..++.+|.+.|++++|+..|+++.+.... +..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 345577778888888888888888888887643 36778888888888888888888888888877543 6778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHH
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPI----------DIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PSIISYGCLI 478 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li 478 (779)
+|...|++++|+++|+++.+.. +.+. ..+..+...+...|++++|+.+|+++.+.... .+..++..++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 8888888888888888887653 1111 12233456666677777777777766664321 1455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 004006 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMD 558 (779)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 558 (779)
.+|.+.|++++|++.|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.... +..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 66667777777777776666543 234566666666666666666666666666654332 4556666666666666666
Q ss_pred HHHHHHHHHHHc
Q 004006 559 RAIHIVKEMQKE 570 (779)
Q Consensus 559 ~A~~~~~~~~~~ 570 (779)
+|...|+++...
T Consensus 299 ~A~~~~~~al~~ 310 (365)
T 4eqf_A 299 EAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666665543
|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-20 Score=146.56 Aligned_cols=79 Identities=18% Similarity=0.392 Sum_probs=74.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCC--eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc----eeeceE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGP--IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV----EFHGRV 225 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~----~~~~~~ 225 (779)
.+|||+|||+++|+++|+++|++||. +.+|++++| +.||++||||||+|.+.++|.+|++.| ||. .++||+
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d-~~tg~srG~aFV~f~~~~~A~~Ai~~l--ng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD-KQTQQNRGFAFVQLSSAMDASQLLQIL--QSLHPPLKIDGKT 86 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC-SSSSSCSSEEEEECSSSHHHHHHHHHH--HSSSSCEEETTEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec-CCCCCCceEeEEEECCHHHHHHHHHHh--cCCCCCceECCEE
Confidence 39999999999999999999999995 679999999 999999999999999999999999999 986 589999
Q ss_pred EEEEecCC
Q 004006 226 LTVKLDDG 233 (779)
Q Consensus 226 ~~v~~~~~ 233 (779)
|+|++|++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=181.91 Aligned_cols=274 Identities=9% Similarity=-0.045 Sum_probs=162.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004006 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFC 552 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 552 (779)
.+..++..+.+.|++++|+.+|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.... +..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 35555555556666666666665555542 224555555555555555555555555555554322 3455555555555
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 553 GMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIE 632 (779)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 632 (779)
..|++++|+.+|+++...... +...+..+. .....+..+...+...|++++|+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~ 198 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKE 198 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHH
Confidence 555555555555555543221 111111110 012233445666777777777777
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 633 ILDEMTLAGIS-PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 633 ~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
+|+++++.... .+..++..+...|...|++++|+.+|+++++.. +.+..++..++.+|...|++++|...++++.+..
T Consensus 199 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777765311 156677777777777788888888887777764 4467777778888888888888888888777654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ-----------PDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 712 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----------pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
+.+...|..++.+|.+.|++++|..+++++++..-. .+..+|..+..++...|+.+.+.+.+++
T Consensus 278 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 -PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 455777778888888888888888888877753100 1256778888888888888888776653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-17 Score=175.48 Aligned_cols=384 Identities=10% Similarity=-0.031 Sum_probs=238.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHc--------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE--------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH----- 396 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 396 (779)
....||.|..++...|++++|++.|++.++. .-.....+|+.+..+|...|++++|+..|+++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888888899999999999887542 112246678888888999999999998888876531
Q ss_pred --CCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCC
Q 004006 397 --ATLNAIIYGNIIYAQCQ--TRNMERAEALVRDMEEEGIDAPIDIYHMMMDG---YTIIGNEEKCLIVFERLKECGFSP 469 (779)
Q Consensus 397 --~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~g~~~ 469 (779)
......++..+..++.. .+++++|++.|++..+.+ +.+...+..+..+ +...++.++|++.|++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 01133456655555544 456888888888888764 3445555555544 34456777888888887775322
Q ss_pred CHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004006 470 SIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYN 545 (779)
Q Consensus 470 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 545 (779)
+..++..+...+.. .|++++|.+++++..... ..+..++..+...|...|++++|+..|+++.+.... +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45555555555444 356778888888777654 346677788888888888888888888888776444 556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004006 546 NIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKR 625 (779)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 625 (779)
.+..+|...+... .... ...........+.+++|...|++..+.... +...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 6665553221110 0000 000011111223467788888888776543 4556777888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004006 626 QMEKAIEILDEMTLAGISPNEH--TYTTIMH-GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA 702 (779)
Q Consensus 626 ~~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (779)
++++|+..|++.++....+... .+..+.. .+...|++++|+..|++.++.. ++..... +.+..+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHH
Confidence 9999999999888764332221 2222222 2356788999999999988864 3322221 22344556
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004006 703 VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (779)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (779)
++++....+ +.+..+|..|+.+|...|++++|++.|++.++.|
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666666554 6677889999999999999999999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-16 Score=171.93 Aligned_cols=384 Identities=13% Similarity=-0.026 Sum_probs=263.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcC-----
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR--------GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG----- 361 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----- 361 (779)
....|+.|...|...|++++|++.|++..+. .......+|+.+..+|...|++++|...+++.++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3467899999999999999999999998652 112245689999999999999999999999886521
Q ss_pred -C-CCCHhHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCC
Q 004006 362 -I-EMSLVTYSIIVGGFAKM--GNAEAADHWFEEAKERHATLNAIIYGNIIYAQC---QTRNMERAEALVRDMEEEGIDA 434 (779)
Q Consensus 362 -~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~ 434 (779)
. .....++..+..++.+. +++++|+..|+++.+..+. +...+..+..++. ..++.++|++.+++..+.+ +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1 12356777777666654 4699999999999998655 6777777766644 5677889999999998875 44
Q ss_pred ChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004006 435 PIDIYHMMMDGYT----IIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYS 510 (779)
Q Consensus 435 ~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 510 (779)
+..++..+...+. ..|++++|.+++++...... .+..++..+...|...|++++|+..+++..+.. +-+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 5666666665554 45678899999999887643 367788999999999999999999999998864 33567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 004006 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (779)
.+...|...+....+.. ...........+..+.|...|++....... +...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 77766643211111100 000111111223467888889988887655 6778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004006 591 EMKRALEIFDMMRRSGCIPTV--HTFNALIL-GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFE 667 (779)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 667 (779)
++++|+..|++.++....+.. ..+..+.. .+...|++++|+..|++.++.. |+....... ...+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM---------KDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH---------HHHHHH
Confidence 999999999999886543222 12333332 3457899999999999998763 443322222 334556
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 668 YFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
++++.+... +.+..+|..|+.+|...|++++|.+.+++.++.+
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666766665 5577899999999999999999999999998764
|
| >2lxi_A RNA-binding protein 10; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-20 Score=147.13 Aligned_cols=83 Identities=16% Similarity=0.273 Sum_probs=76.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.+|||+|||+++|+++|+++|++|| .|.+|+|++| +.||+++|||||+|.+.++|.+|++.+ .|+..++||+|+|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d-~~t~~~rg~aFV~F~~~~~A~~Ai~~~-~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRN-KSSGQSRGFAFVEFSHLQDATRWMEAN-QHSLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSC-SSSCCCSSEEEEECSSHHHHHHHHHTT-TTEEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHhc-CCCeEECCEEEEEEE
Confidence 5899999999999999999999999 8999999999 899999999999999999999999875 145679999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
+.++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 988753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=176.05 Aligned_cols=376 Identities=14% Similarity=0.150 Sum_probs=137.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
+.|++++|.+.++++. +..+|..|+.++.+.|++++|++.|.+. .|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455666666666652 1236666666666666666666666432 244566666666666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
+++.+.+. ..+..+...++.+|.+.|++.+++++++ .|+..+|+.+++.|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55555442 2234555566666666666666665553 234446666666666666666666666644
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (779)
..|..++.++.+.|++++|.+.++++ -+..+|..++.+|...|+++.|......+ ..++.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 25666666666666666666666655 14566666666666666666664433321 1233334456
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCC------CCHHHHHHHHH
Q 004006 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA--GEMKRALEIFDMMRRSGCI------PTVHTFNALIL 619 (779)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~------~~~~~~~~li~ 619 (779)
+..|.+.|++++|+.+|+...... .-....|+-|..+|++- +++.+.+++|..-. ++. -+...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665544 22344455444444432 23333343332110 010 13445667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-C-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004006 620 GLVEKRQMEKAIEILDEMTLAG-I-------------SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYE 685 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~-~-------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 685 (779)
.|.+-++++.|... |.+.- . ..+...|-..+.-|.... -.++.-+...+.. ..| .+
T Consensus 291 ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--p~~l~~ll~~l~~--~ld---~~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--PLLLNDLLMVLSP--RLD---HT 360 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC--GGGHHHHHHHHGG--GCC---HH
T ss_pred HHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC--HHHHHHHHHHHHh--ccC---cH
Confidence 77777777766542 22220 0 223334444444443111 1111111112211 112 13
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (779)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (779)
.++..+.+.|++.-+..++..+... .+..+-.+|-..|....|++.-..-++
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4555667777777777777766653 355555677777777777766555544
|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-19 Score=157.26 Aligned_cols=83 Identities=13% Similarity=0.362 Sum_probs=78.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccC--CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.++|||||||+++|+++|+++|++|| .|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d-~~tg~skGfaFV~f~~~~~A~~Ai~~l--ng~~~~Gr~l~V 131 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN-RANGQSKGYAEVVVASENSVHKLLELL--PGKVLNGEKVDV 131 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHS--TTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEeEE
Confidence 35999999999999999999999999 9999999999 899999999999999999999999999 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
.++.++..
T Consensus 132 ~~a~~~~~ 139 (156)
T 3n9u_C 132 RPATRQNL 139 (156)
T ss_dssp EECCHHHH
T ss_pred EEcCCCcc
Confidence 99977643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=163.92 Aligned_cols=263 Identities=8% Similarity=-0.044 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..+..+...+...|++++|+.+|+++.+... .+..++..+..++...|++++|.+.|+++++.. +.+..++..++..|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3456678888899999999999999988753 367788888999999999999999999998874 33678888899999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNI--------------IY-AQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 441 (779)
...|++++|+..|+++.+.... +...+..+ .. ++...|++++|+++++++.+.. +.+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 9999999999999999887543 33344333 22 3555666666666666666553 334555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (779)
+...|...|++++|+..++++.+... .+..++..++.++...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 66666666666666666666655422 244555566666666666666666666655542 2244555555556666666
Q ss_pred HHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004006 522 WANVFAVFEDVMRDGLKP-----------DVVLYNNIIRAFCGMGNMDRAIHIVK 565 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (779)
+++|...|+++.+..... +...|..+..++.+.|+.++|..+++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666665555432221 23445555555555555555555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-17 Score=166.69 Aligned_cols=381 Identities=8% Similarity=0.075 Sum_probs=179.9
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
..++|+. +.|.+.++++- .+..|..|+.++.+.|++++|++.|.+.
T Consensus 13 l~~~~~l---------d~A~~fae~~~--------------------~~~vWs~La~A~l~~g~~~eAIdsfika----- 58 (449)
T 1b89_A 13 IEHIGNL---------DRAYEFAERCN--------------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCH---------HHHHHHHHhCC--------------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----
Confidence 3566666 77777777771 2346788999999999999999999763
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
+|...|..++..+...|++++|+..++..++. .++..+.+.++.+|.+.|+++++.++|+ .++..+|..+
T Consensus 59 -~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~I 128 (449)
T 1b89_A 59 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 128 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTT-------CC--------
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHH
Confidence 37779999999999999999999988777664 3467889999999999999999998885 2577799999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 004006 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (779)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 487 (779)
+..|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|++
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 193 (449)
T ss_dssp --------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcH
Confidence 99999999999999999977 46999999999999999999999988 2789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 004006 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM--GNMDRAIHIVK 565 (779)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 565 (779)
+.|......+ .........++..|.+.|.+++|..+++..+... .-....|+.|.-+|++- +++.+.+++|.
T Consensus 194 ~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 194 RLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9996655442 2344445578999999999999999999988665 34677888887777765 23444444443
Q ss_pred HHHHcCCC------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHH
Q 004006 566 EMQKERHR------PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC-----------IPTVHTFNALILGLVEKRQME 628 (779)
Q Consensus 566 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~ 628 (779)
.- .++. -+...|..+...|.+.++++.|......-....+ ..+...|...|.-|.... .
T Consensus 268 ~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--p 343 (449)
T 1b89_A 268 SR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--P 343 (449)
T ss_dssp TT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC--G
T ss_pred HH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC--H
Confidence 21 1111 1567889999999999999988775432211101 013344444444444211 1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004006 629 KAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTK 705 (779)
Q Consensus 629 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (779)
.++.-|-..... +.| .+.++..+.+.|++.-+..++..+...+ +..+-.+|-..|....+++.-..-++
T Consensus 344 ~~l~~ll~~l~~--~ld---~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 344 LLLNDLLMVLSP--RLD---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp GGHHHHHHHHGG--GCC---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccC---cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 111111111111 111 2344555666777766777776666543 55566667777777777766555444
|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=141.99 Aligned_cols=78 Identities=31% Similarity=0.473 Sum_probs=75.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeE--------EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
++|||||||+++++++|+++|++||.|.+ ++++.| +.+|+++|||||+|.+.++|.+|++.| ||..++|
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~G~afV~f~~~~~a~~Ai~~l--~g~~~~g 90 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWF--DGKEFSG 90 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEEC-TTTCSEEEEEEEEBSSHHHHHHHHHHH--TTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEec-CCCCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCC
Confidence 49999999999999999999999999999 999999 889999999999999999999999999 9999999
Q ss_pred eEEEEEecC
Q 004006 224 RVLTVKLDD 232 (779)
Q Consensus 224 ~~~~v~~~~ 232 (779)
+.|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=137.25 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=77.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||+|||.++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc-CCCCCccceEEEEECCHHHHHHHHHHh--cCCeeCCcEEEEEec
Confidence 58999999999999999999999999999999999 889999999999999999999999999 999999999999999
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
+++
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 776
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-17 Score=164.74 Aligned_cols=279 Identities=8% Similarity=-0.040 Sum_probs=186.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..+|...|++++|...|+++.+.... +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 34456677888888999999999998888764 336778888888888889999999888888876443 6777888888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCH
Q 004006 550 AFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL--GLVEKRQM 627 (779)
Q Consensus 550 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~ 627 (779)
.+...|++++|+..++++...... +...+..++..+ ++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888888876543 333333221100 01111111212 24556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 628 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
++|+.+++++.+.. +.+...+..+...|...|++++|..+++++.+.. +.+..++..++.+|...|++++|..+++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766543 3355666677777777777777777777776654 345667777777777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP-----------DVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----------d~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
.+.. +.+...+..++.+|.+.|++++|.++++++.+..-.. +..+|..+..++...|+.++|.+++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6654 4556677777777777777777777777776642111 355677777777777777777777654
|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-18 Score=149.41 Aligned_cols=84 Identities=19% Similarity=0.471 Sum_probs=79.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.+
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD-RETRQSRGYGFVKFQSGSSAQQAIAGL--NGFNILNKRLKVAL 118 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEE-TTTTEEEEEEEEEESSHHHHHHHHHHT--TTEECSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9877543
|
| >2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=131.35 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=69.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+..||||||++.+|+++|+++|.+||+|.+++++.. ||||||+|.+.++|.+|++.| ||..+.||.|+|++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-------kGfaFVey~~~~eA~~Ai~~L--n~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-------QGIALCKYTTREEANKAQMAL--NNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-------CcEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEEE
Confidence 358999999999999999999999999999999865 999999999999999999999 99999999999999
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
|+
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 84
|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-19 Score=142.99 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=72.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccC--CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+|||||||+++|+++|+++|++|| .|.+++++.| +.+|+++|||||+|.+.++|.+|++.| ||..++||.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~-~~~g~~kG~afV~f~~~~~a~~Ai~~l--~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC-TTTCCEEEEEEECC-CHHHHHHHHHHG--GGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec-CCCCccCcEEEEEECCHHHHHHHHHHc--CCCeeCCEEEEEE
Confidence 4899999999999999999999999 9999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.+..
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 987663
|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=145.28 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=75.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 115 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID-KQTSLSKCFGFVSFDNPDSAQVAIKAM--NGFQVGTKRLKVQ 115 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC-SSSSCCCCEEEEEEESSHHHHHHHHHC--CCCEETTEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCcCcEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=140.01 Aligned_cols=84 Identities=14% Similarity=0.407 Sum_probs=79.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||||||.++++++|+++|++||.|.+++|+.| +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD-PQTGRSKGYAFIEFRDLESSASAVRNL--NGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-TTTCCBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEE
Confidence 469999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++...
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9887533
|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=137.92 Aligned_cols=82 Identities=23% Similarity=0.394 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||.++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 98765
|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-19 Score=140.10 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=72.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.+..+|..|+||+|+|++
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 459999999999999999999999999999999987 8999999999999999999882234789999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++...
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9877544
|
| >3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-19 Score=144.54 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=77.7
Q ss_pred cceEEeccCCC------cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec-
Q 004006 151 EGKIFVGNLPN------WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG- 223 (779)
Q Consensus 151 ~~~~~v~~l~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~- 223 (779)
+++|||+|||+ ++++++|+++|++||.|.+|+|++| +.||+++|||||+|.+.++|.+|++.| ||..++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPID-EATGKTKGFLFVECGSMNDAKKIIKSF--HGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHh--CCcccCCC
Confidence 45999999999 9999999999999999999999999 889999999999999999999999999 9999999
Q ss_pred eEEEEEecCCc
Q 004006 224 RVLTVKLDDGR 234 (779)
Q Consensus 224 ~~~~v~~~~~~ 234 (779)
+.|+|.++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999765
|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=136.08 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC-CCCCccccEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 974
|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=135.62 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=71.5
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce--eeceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE--FHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~--~~~~~~ 226 (779)
.++.+|||+|||+++|+++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+ ||.. ++||+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~AFVef~~~~~A~~Av~~l--n~~~~~i~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-------KRQALVEFEDVLGACNAVNYA--ADNQIYIAGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--HHSCEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHh--cCCCceeCCcEE
Confidence 34569999999999999999999999999999999876 899999999999999999999 7765 789999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+|++++++.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998764
|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-19 Score=142.93 Aligned_cols=79 Identities=28% Similarity=0.440 Sum_probs=74.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++++++|+++|++|| |.+|+|++++..+|+++|||||+|.+.++|.+|+ .+ ||..++|+.|+|+++
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l--~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNRRIRVDVA 95 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT--TTCCBTTBCCCCEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc--CCCEECCeEEEEEec
Confidence 5999999999999999999999999 9999999983269999999999999999999999 88 999999999999999
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
+++
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 775
|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=138.08 Aligned_cols=81 Identities=23% Similarity=0.415 Sum_probs=77.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+++.| +.+|+++|||||+|.+.++|.+|++.| ||..++|++|+|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRVS 90 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC-SSSSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEc-CCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3459999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 004006 230 LDDG 233 (779)
Q Consensus 230 ~~~~ 233 (779)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9865
|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=137.16 Aligned_cols=79 Identities=19% Similarity=0.491 Sum_probs=76.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKD-KDTRKSKGVAFILFLDKDSAQNCTRAI--NNKQLFGRVIKASI 92 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCC-SSSCCCTTCEEEEESCHHHHHHHHHHT--TTEEETTEEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEEEe
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=138.33 Aligned_cols=84 Identities=25% Similarity=0.535 Sum_probs=79.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||.++++++|+++|++||.|.+|+++.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD-SDTGRSKGYGFITFSDSECARRALEQL--NGFELAGRPMRVGH 81 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECC-SSSCCCCSEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEEE
Confidence 469999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++..+
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9877543
|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=143.80 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=74.6
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||||||+++|+++|+++|++||.|.+|+|++| + ++++|||||+|.+.++|++|++.| ||..|+|+.|+|.++
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d-~--~~~kg~afV~f~~~~~A~~Ai~~l--~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGRF 80 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T--TEEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEES
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeec-C--CCCCceEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 48999999999999999999999999999999988 3 457999999999999999999999 999999999999999
Q ss_pred CCcch
Q 004006 232 DGRRL 236 (779)
Q Consensus 232 ~~~~~ 236 (779)
+++..
T Consensus 81 ~~~~~ 85 (115)
T 4f25_A 81 KSRKE 85 (115)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 77643
|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=139.08 Aligned_cols=84 Identities=27% Similarity=0.424 Sum_probs=79.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID-SLTKKPKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRMLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC-TTTCCCCSEEEEEESSHHHHHHHHHHT--TTEESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 4469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987753
|
| >2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=142.02 Aligned_cols=82 Identities=24% Similarity=0.524 Sum_probs=78.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||..+++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|++
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD-SETGRSKGYGFITFSDSECAKKALEQL--NGFELAGRPMKVGH 102 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEE-TTTTEEEEEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98763
|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=138.46 Aligned_cols=81 Identities=21% Similarity=0.433 Sum_probs=77.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.+
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTN-R-AGKPKGLAYVEYENESQASQAVMKM--DGMTIKENIIKVAI 92 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTEESSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC-C-CCCEEeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEE
Confidence 459999999999999999999999999999999998 5 8999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98774
|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=143.38 Aligned_cols=83 Identities=22% Similarity=0.458 Sum_probs=78.9
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|++
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID-KQTNLSKCFGFVSYDNPVSAQAAIQSM--NGFQIGMKRLKVQL 101 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-CCCCCcCccEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987753
|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=141.41 Aligned_cols=85 Identities=24% Similarity=0.396 Sum_probs=80.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 89 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD-KTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNV 89 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEE
Confidence 34569999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
.+++++..
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987753
|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=142.15 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=79.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhC------Cceeec
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD------GVEFHG 223 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~------g~~~~~ 223 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.+ | |..++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~~--~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH-PDTEHSKGCAFAQFMTQEAAQKCLAAA--SLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCCBCSEEEEEESSHHHHHHHHHHH--CTTTTTCCEESSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCCccEEEEEECCHHHHHHHHHHh--ccccccCCcEEcC
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9 999999
Q ss_pred eEEEEEecCCcchh
Q 004006 224 RVLTVKLDDGRRLK 237 (779)
Q Consensus 224 ~~~~v~~~~~~~~~ 237 (779)
+.|+|.++.++..+
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999877543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-16 Score=155.04 Aligned_cols=256 Identities=9% Similarity=0.064 Sum_probs=176.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (779)
|+.....|+++.|+..++................+.++|...|++++|+..++.. -.++..++..++..+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 3445567888888888777654321111234556677888888888888766441 245667777788888888888
Q ss_pred HHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 383 EAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (779)
++|++.|+++...+. .-+...+..++.+|...|++++|++++++ +.+..++..++..|.+.|++++|++.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888876643 22566677777888888888888888876 34567777778888888888888888888
Q ss_pred HHHCCCCCCHhhH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 462 LKECGFSPSIISY---GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (779)
Q Consensus 462 ~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (779)
+.+.. |+.... ..++..+...|++++|+.+|+++.+.. +.+...++.+..+|.+.|++++|...|+++++....
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 87753 332211 122333444577888888888877763 446777777777888888888888888887776444
Q ss_pred CCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcCC
Q 004006 539 PDVVLYNNIIRAFCGMGNMDR-AIHIVKEMQKERH 572 (779)
Q Consensus 539 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 572 (779)
+..++..++..+...|+.++ +.++++++.+..+
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 66777777777777777765 4577777776643
|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=141.01 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=78.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD-RVTGQHQGYGFVEFLSEEDADYAIKIM--DMIKLYGKPIRVNK 91 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCSBCSCEEEEESSHHHHHHHHHHS--SSCBCSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCcCCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEE
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 97764
|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=139.98 Aligned_cols=85 Identities=25% Similarity=0.459 Sum_probs=80.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC-SSSCCCSSEEEECCSSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99877543
|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-18 Score=138.65 Aligned_cols=83 Identities=25% Similarity=0.532 Sum_probs=78.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++ + ||..++|+.|+|.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD-AEKQRPRGFGFITFEDEQSVDQAVN-M--HFHDIMGKKVEVK 84 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC-TTTCSCCSEEEEEESSHHHHHHHHH-H--CCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCCCceEEEEECCHHHHHHHHH-h--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999999 8899999999999999999999998 8 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987753
|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-18 Score=142.39 Aligned_cols=82 Identities=18% Similarity=0.365 Sum_probs=77.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|+ .+ ||..|+|+.|+|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD-RNSRRSKGIAYVEFCEIQSVPLAI-GL--TGQRLLGVPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS-CCSSSCCCCEEEEESCGGGHHHHH-HH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEec-CCCCccCcEEEEEeCcHHHHHHHH-Hc--CCCEeCCeEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999 88 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 987653
|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-18 Score=141.83 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=78.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||.++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 101 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBC-TTTSSBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997664
|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=140.46 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=78.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE-PHTKAPRGFAFVRFHDRRDAQDAEAAM--DGAELDGRELRVQ 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBC-SSSCSBCSCEEEEESSSSHHHHHHHHH--SSCCBTTBCCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCCCeEEEEEECCHHHHHHHHHHc--CCCEECCcEEEEE
Confidence 4469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998664
|
| >2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-18 Score=141.04 Aligned_cols=83 Identities=24% Similarity=0.437 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||||||+++|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.+ |..++|+.|+|.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~tg~~kg~afV~f~~~~~A~~Ai~~~---~~~l~g~~l~V~ 99 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQS---RHELDSKTIDPK 99 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC-TTTCCCTTCEEEEESSHHHHHHHHHSS---CEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC-CCCCCcCcEEEEEECCHHHHHHHHHHC---CCcCCCEEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999875 699999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987753
|
| >2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-18 Score=148.79 Aligned_cols=81 Identities=16% Similarity=0.354 Sum_probs=76.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeE--EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc----eeece
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV----EFHGR 224 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~----~~~~~ 224 (779)
.++|||||||+++|+++|+++|++||.|.. |+|++| +.||++||||||+|.+. +|.+|+..| ||. .++||
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d-~~tg~~rG~aFV~f~~~-~a~~Ai~~l--~g~~~~~~~~gr 98 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKD-KQTQLNRGFAFIQLSTI-EAAQLLQIL--QALHPPLTIDGK 98 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBC-SSSSSBCSCEEEECCHH-HHHHHHHHH--TTCCCSCCGGGC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEc-CCCCCcceEEEEEECCH-HHHHHHHHh--cCCCCCccCCCE
Confidence 359999999999999999999999999976 999999 88999999999999999 999999999 999 99999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-18 Score=140.31 Aligned_cols=79 Identities=28% Similarity=0.491 Sum_probs=74.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||.++++++|+++|++||.|.+|+++.| + ++++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~--~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~a 104 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVNNA 104 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCB-T--TBCTTEEEEECCCSHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEEC-C--CCCceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 59999999999999999999999999999999987 3 458999999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
+++.
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8764
|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-18 Score=136.14 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=73.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+..++..++||+|+|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 4469999999999999999999999999999999876 899999999999999999987446788999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99877543
|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-18 Score=142.25 Aligned_cols=84 Identities=23% Similarity=0.364 Sum_probs=79.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRTN 90 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987653
|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-18 Score=141.08 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=78.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 98 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISVD 98 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESCHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEec-CCCCceeeEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++++
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98765
|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-18 Score=138.26 Aligned_cols=84 Identities=24% Similarity=0.420 Sum_probs=79.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEE-EEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++|||+|||+++++++|+++|++||.|.++ +|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD-PDTGNSKGYAFINFASFDASDAAIEAM--NGQYLCNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC-TTTCSCCSEEEEEBSSHHHHHHHHHTT--TTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc-CCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 34699999999999999999999999999999 99998 889999999999999999999999999 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
++++++..
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 99977653
|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-18 Score=134.94 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=76.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|+ .+ ||..++|+.|+|.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~-~~--~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD-KFSGHPKGFAYIEFSDKESVRTSL-AL--DESLFRGRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEES-CSSSSCCEEEEEEESSTHHHHHHG-GG--TTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHH-hc--CCCEECCcEEEEEE
Confidence 469999999999999999999999999999999999 889999999999999999999999 88 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
+++.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 9765
|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-18 Score=139.10 Aligned_cols=78 Identities=15% Similarity=0.302 Sum_probs=73.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.+|+|++| +. |+++|||||+|.+.++|.+|+. + ||..++|+.|+|.+
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d-~~-g~~rG~aFV~F~~~e~a~~Ai~-~--~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-LH-KAFKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLLILF 85 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECC-CT-TSCCCEEEEEESSHHHHHHHHT-S--SCCCCTTTTCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEEC-CC-CCCccEEEEEECCHHHHHHHHH-c--CCCEECCEEEEEEE
Confidence 459999999999999999999999999999999999 65 9999999999999999999998 7 99999999999998
Q ss_pred cCC
Q 004006 231 DDG 233 (779)
Q Consensus 231 ~~~ 233 (779)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-18 Score=144.36 Aligned_cols=83 Identities=24% Similarity=0.443 Sum_probs=78.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~l--ng~~i~g~~l~V~ 121 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRVD 121 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECC-SSSSCCCCEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3459999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997763
|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-18 Score=139.11 Aligned_cols=84 Identities=25% Similarity=0.441 Sum_probs=78.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec---eEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG---RVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~---~~~ 226 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.| ||..+.| +.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-P-DGSSKGCAFVKFSSHTEAQAAIHAL--HGSQTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-S-SSCEEEEEEEEESSHHHHHHHHHHH--SSCCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCcCcEEEEEeCCHHHHHHHHHHH--cCCccCCCCCccE
Confidence 3469999999999999999999999999999999998 5 7999999999999999999999999 9999988 999
Q ss_pred EEEecCCcchh
Q 004006 227 TVKLDDGRRLK 237 (779)
Q Consensus 227 ~v~~~~~~~~~ 237 (779)
+|.+++++..+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999877543
|
| >3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=132.71 Aligned_cols=79 Identities=25% Similarity=0.508 Sum_probs=73.5
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++ + +|..++|+.|+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD-PNTGRSRGFGFILFKDAASVEKVLD-Q--KEHRLDGRVIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSTHHHHHHHH-S--SCEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec-CCCCccccEEEEEECCHHHHHHHHH-h--CCCEECCEEEEE
Confidence 34469999999999999999999999999999999999 8899999999999999999999995 4 789999999999
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-18 Score=141.08 Aligned_cols=84 Identities=31% Similarity=0.641 Sum_probs=78.6
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.| + +|+++|||||+|.+.++|++|++.| ||..++|+.|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-R-TSKSRGFAFITFENPADAKNAAKDM--NGKSLHGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECS-T-TTTCCCEEEEECSSHHHHHHHHHHC--SSCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-C-CCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 5 8999999999999999999999999 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
++++++..
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99987653
|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=141.77 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=78.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|+ .+ ||..|+|+.|+|
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V 109 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD-KFSGHPKGYAYIEFAERNSVDAAV-AM--DETVFRGRTIKV 109 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE-CTTSSCEEEEEEEESSHHHHHHHH-TT--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcccEEEEEECCHHHHHHHH-hc--CCCeECCeEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999 78 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+++++..
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9997654
|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-18 Score=139.38 Aligned_cols=84 Identities=30% Similarity=0.554 Sum_probs=79.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD-RETQRSRGFGFVTFENIDDAKDAMMAM--NGKSVDGRQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC-SSSCSCCSEEEEECSSHHHHHHHHHHH--TTCCTTSCCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9977653
|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-18 Score=137.66 Aligned_cols=83 Identities=27% Similarity=0.476 Sum_probs=77.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCC---CCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN---FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +. ||+++|||||+|.+.++|.+|++.| ||..++|+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~gt~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l 80 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKK-KNKAGVLLSMGFGFVEYKKPEQAQKALKQL--QGHTVDGHKL 80 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-ECTTCCEEEEEEEEEEESSHHHHHHHHHHS--TTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCCcCcccEEEEEECCHHHHHHHHHHh--CCCeeCCeEE
Confidence 3469999999999999999999999999999999998 54 6699999999999999999999999 9999999999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+|.+++++.
T Consensus 81 ~V~~a~~~~ 89 (98)
T 2cpf_A 81 EVRISERAT 89 (98)
T ss_dssp EEECSSCSS
T ss_pred EEEEccCCC
Confidence 999997764
|
| >2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-18 Score=130.75 Aligned_cols=75 Identities=25% Similarity=0.478 Sum_probs=71.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|++|++ + ||..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD-KTTNRHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBC-SSSTTSCBEEEEECSCHHHHHHHHS-S--SCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHH-C--CCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999998 8899999999999999999999997 7 999999999999875
|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=134.90 Aligned_cols=80 Identities=29% Similarity=0.576 Sum_probs=75.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+.+++++|+++|++||.|.+|+|+.| +. |+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~-~~-g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKD-RE-GKPKSFGFVCFKHPESVSYAIALL--NGIRLYGRPINVS 90 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TT-SCEEEEEEEEESSTHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEEC-CC-CCCceEEEEEECCHHHHHHHHHHh--CCCEECCCEEEEE
Confidence 3469999999999999999999999999999999998 54 999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 004006 230 LDDG 233 (779)
Q Consensus 230 ~~~~ 233 (779)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
|
| >2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=134.06 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=74.7
Q ss_pred ccceEEeccCCCcCChHHHH----HHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
++++|||||||+++++++|+ ++|++||.|.+|+|+.| +.+ +|||||+|.+.++|.+|++.| ||..++||.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~-~~~---rg~afV~f~~~~~A~~Ai~~l--~g~~~~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPH-TDY---QLKAVVQMENLQDAIGAVNSL--HRYKIGSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSC-CST---TCCEEEEESSHHHHHHHHHHH--TTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeC-CCC---CeEEEEEECCHHHHHHHHHHh--CCCEECCeE
Confidence 44699999999999999999 99999999999999998 554 899999999999999999999 999999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
|+|++++++.
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999998764
|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-18 Score=133.99 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=76.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCC-CcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK-NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.++|||+|||.++|+++|+++|++||.|.+++++.+ +.+++ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE-RMHPHLSKGYAYVEFENPDEAEKALKHM--DGGQIDGQEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTEEEEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeC-CCCCCCCCcEEEEEEecHHHHHHHHHHc--CCCeECCeEEEEE
Confidence 469999999999999999999999999999999998 65555 8999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.+..
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987653
|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-18 Score=139.76 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=78.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee---eceEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HGRVLT 227 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~---~~~~~~ 227 (779)
.++|||+|||.++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..+ +|++|+
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD-RFTGMHKGCAFLTYCERESALKAQSAL--HEQKTLPGMNRPIQ 89 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCC-SSSCSCCSEEEEEESSHHHHHHHHHHH--TTTCCCTTCSSCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--cCCcccCCCCceEE
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99998 999999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.+++++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987653
|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-18 Score=138.26 Aligned_cols=81 Identities=28% Similarity=0.478 Sum_probs=76.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++|| |.+|+|+.| +.+|+++|||||+|.+.++|.+|+ .| ||..|+|+.|+|.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRD-KDTDKFKGFCYVEFDEVDSLKEAL-TY--DGALLGDRSLRVDI 89 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHG-GG--TTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeec-CCCCccceEEEEEECCHHHHHHHH-hh--CCCeECCeEEEEEE
Confidence 46999999999999999999999997 999999999 889999999999999999999999 78 99999999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-15 Score=152.80 Aligned_cols=250 Identities=13% Similarity=0.075 Sum_probs=118.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSI--ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (779)
+.....|++..|+..++++... .|+. .....+..+|...|+++.|+..++.. -.++..++..+...|...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 3445566666666665554332 1221 23344555666666666666544331 13344455555555555566
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 004006 522 WANVFAVFEDVMRDGLKP-DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFD 600 (779)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 600 (779)
.++|++.++++...+..| +...+..+..++...|++++|++.|++ ..+...+..++..|.+.|++++|+..|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666655544323 333444444555555555555555554 1233444445555555555555555555
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004006 601 MMRRSGCIPTVHTF---NALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL 677 (779)
Q Consensus 601 ~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 677 (779)
++.+.. |+.... ..++..+...|++++|+.+|+++.+.. +.+...|+.+..++.+.|++++|...|+++++..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 555432 221100 111122222344555555555544432 3344444444445555555555555555544443
Q ss_pred CCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Q 004006 678 ELDVFTYEALLKACCKSGRMQS-ALAVTKEMSA 709 (779)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 709 (779)
+.+..++..++..+...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2344444444444444444433 3344444444
|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-18 Score=140.50 Aligned_cols=84 Identities=26% Similarity=0.424 Sum_probs=79.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCee--------EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
+.++|||+|||+++|+++|+++|++||.|. .|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD-KETGKPKGDATVSYEDPPTAKAAVEWF--DGKDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC-TTTCSBCSEEEEEBSSHHHHHHHHHHH--TTCEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe-CCCCCeeeEEEEEECCHHHHHHHHHHc--CCCcc
Confidence 446999999999999999999999999999 6999999 889999999999999999999999999 99999
Q ss_pred eceEEEEEecCCcch
Q 004006 222 HGRVLTVKLDDGRRL 236 (779)
Q Consensus 222 ~~~~~~v~~~~~~~~ 236 (779)
+|+.|+|.+++++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987753
|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-18 Score=138.37 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=73.3
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.++++|||||||+++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.+..+|..|+|++|+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 34569999999999999999999999999999999987 89999999999999999998822256899999999
Q ss_pred EecCCcchh
Q 004006 229 KLDDGRRLK 237 (779)
Q Consensus 229 ~~~~~~~~~ 237 (779)
++++++...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999887644
|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-18 Score=137.44 Aligned_cols=83 Identities=14% Similarity=0.360 Sum_probs=78.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCee-EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE---
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK-NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV--- 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~--- 225 (779)
+.++|||+|||+++++++|+++|++||.|. +|+|++| +.+|+++|||||+|.+.++|++|++.| ||..++|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN-RLTGIPAGYCFVEFADLATAEKCLHKI--NGKPLPGATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC-SSSCCEEEEEEEECSCHHHHHHHHHTT--TTSEESSCSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec-CCCCCcCCEEEEEeCCHHHHHHHHHHH--cCCccCCCCcce
Confidence 446999999999999999999999999999 9999999 889999999999999999999999999 999999999
Q ss_pred -EEEEecCCcc
Q 004006 226 -LTVKLDDGRR 235 (779)
Q Consensus 226 -~~v~~~~~~~ 235 (779)
|+|+++++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997664
|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.9e-18 Score=138.10 Aligned_cols=82 Identities=26% Similarity=0.413 Sum_probs=76.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCC-CCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF-EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.++|||+|||+++++++|+++|++|| |.+|+|+.+ +.+ |+++|||||+|.+.++|.+|+ .+ ||..|+|+.|+|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~-~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE-PSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNKRIRVD 89 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBC-SSCTTSBCSCEEEEESSHHHHHHHH-GG--GTCEETTEECEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecC-CCCCCCcCeEEEEEECCHHHHHHHH-hc--CCCEeCCcEEEEE
Confidence 35999999999999999999999999 999999999 666 999999999999999999999 88 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877533
|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-18 Score=139.31 Aligned_cols=85 Identities=29% Similarity=0.531 Sum_probs=80.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+.+++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYD-RETGKPKGYGFCEYQDQETALSAMRNL--NGREFSGRALRVDN 84 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEE-TTTTEEEEEEEEECSCHHHHHHHHHHS--SSBSCSSSCBEEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEEe
Confidence 359999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcchhh
Q 004006 231 DDGRRLKN 238 (779)
Q Consensus 231 ~~~~~~~~ 238 (779)
++++..+.
T Consensus 85 a~~~~~~~ 92 (104)
T 1p1t_A 85 AASEKNKE 92 (104)
T ss_dssp TTCTTHHH
T ss_pred CCCccchh
Confidence 98876544
|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-17 Score=138.23 Aligned_cols=83 Identities=24% Similarity=0.364 Sum_probs=77.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+++|||+|||+++++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECC-S-SSSCCSEEEEEESSHHHHHHHHHHH--TTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHHHc--CCCEECCcEEEE
Confidence 34569999999999999999999999999999999998 6 8999999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+++.+..
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997653
|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-18 Score=135.40 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=76.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++++++|+++|++||.|.+++|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.++|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD-KTTNKCKGYGFVDFDSPSAAQKAVTAL--KASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC-SSSCSCCSEEEEEESCHHHHHHHHHHH--HHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHh--cCCeEeeEEEeec
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999988
Q ss_pred ecCC
Q 004006 230 LDDG 233 (779)
Q Consensus 230 ~~~~ 233 (779)
+.++
T Consensus 81 ~~~s 84 (85)
T 1x4e_A 81 GPSS 84 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
|
| >1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-18 Score=135.24 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=70.1
Q ss_pred ccceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC--ceeeceEE
Q 004006 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG--VEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g--~~~~~~~~ 226 (779)
++++|||||||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|++.++|.+|++.| || ..|+||+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l--~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYY--TTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHH--HHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHH--cCCCceECCcEE
Confidence 456999999999 9999999999999999999999987 799999999999999999998 65 56999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|++++..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999754
|
| >2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=133.82 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=73.1
Q ss_pred ceEEeccC----CCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCC----HHH----HHHHHHHhhhCCc
Q 004006 152 GKIFVGNL----PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG----PAA----EKSAMKAVEFDGV 219 (779)
Q Consensus 152 ~~~~v~~l----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~a~~~~~~~g~ 219 (779)
..|||||| ++.+++.+|+++|++||.|.++.++.| +.||+++|||||+|.+ +++ |.+|+..+..||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~D-p~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFND-PNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEEC-TTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 48999999 999999999999999999999999999 9999999999999996 333 7788773223999
Q ss_pred eeeceEEEEEecCCcch
Q 004006 220 EFHGRVLTVKLDDGRRL 236 (779)
Q Consensus 220 ~~~~~~~~v~~~~~~~~ 236 (779)
.|+||.|+|.+-+...+
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999999766654
|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=137.08 Aligned_cols=81 Identities=26% Similarity=0.420 Sum_probs=76.3
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...++|||+|||+.+++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-R-SGRSLGTADVHFERKADALKAMKQY--NGVPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEE
Confidence 34469999999999999999999999999999999998 5 8999999999999999999999999 999999999999
Q ss_pred EecCC
Q 004006 229 KLDDG 233 (779)
Q Consensus 229 ~~~~~ 233 (779)
+++.+
T Consensus 103 ~~a~s 107 (107)
T 3ulh_A 103 QLVTS 107 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99853
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-16 Score=164.70 Aligned_cols=349 Identities=12% Similarity=0.078 Sum_probs=161.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM---EEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
+...+.+.|++++|+++|+++.+.| +...+..|...|...|+. ++|+.+|++..+. +...+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555566666666666666665554 334444455555555555 5666666655542 44445555553443
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 004006 379 MG-----NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (779)
Q Consensus 379 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (779)
.+ ++++|+.+|++..+.+ +...+..|...|...+...++.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~------------------------------- 127 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVN------------------------------- 127 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCC-------------------------------
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHH-------------------------------
Confidence 33 4556666666665543 22355555555554433222221
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 004006 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK---DWANVFAVFE 530 (779)
Q Consensus 454 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~ 530 (779)
+++.+.+....| +...+..|...|...+.++++.+....+.+.-...+...+..|..+|...| +.++|+..|+
T Consensus 128 -a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 128 -AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp -HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 222222222222 233344444444444433332222111111101111224445555555555 5555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-H--HhcCCHHHHHHHHHHHH
Q 004006 531 DVMRDGLKPDVVLYNNIIRAFCGM----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHG-F--ARAGEMKRALEIFDMMR 603 (779)
Q Consensus 531 ~~~~~g~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~ 603 (779)
+..+.|.. +...+..|..+|... +++++|+.+|++.. .+ +...+..|... | ...+++++|+..|++..
T Consensus 204 ~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 204 AGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 55555433 333334444444333 45666666666555 21 33344444444 2 34566666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004006 604 RSGCIPTVHTFNALILGLVEKR-----QMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFTKLRN 674 (779)
Q Consensus 604 ~~~~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 674 (779)
+.| +...+..|...|. .| ++++|+..|++.. . -+...+..|...|.. ..++++|..+|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 654 4555555555555 33 6667777666655 2 244555555555554 2367777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 004006 675 EGLELDVFTYEALLKACCK----SGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 711 (779)
.|. ......|..+|.. ..+.++|..++++..+.|
T Consensus 351 ~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 351 NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 652 2334455555543 336677777777776655
|
| >2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=136.90 Aligned_cols=83 Identities=24% Similarity=0.408 Sum_probs=77.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEM--NGRIVATKPLYVA 88 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 4569999999999999999999999999999999986 7999999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99877543
|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-18 Score=129.97 Aligned_cols=76 Identities=24% Similarity=0.473 Sum_probs=73.0
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.+ | ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~~--~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQS--R-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC-CCSSSCSSEEEECCCCTTHHHHHHHTT--T-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC-CCCCCcCceEEEEEcCHHHHHHHHHhC--C-CccCCEEEEEEec
Confidence 48999999999999999999999999999999998 889999999999999999999999998 7 9999999999986
|
| >2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-18 Score=137.11 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=76.9
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|++|++.| ||..|+|+.|+|++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLVL 91 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHT--TTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE-CCCCCeeeEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEEE
Confidence 359999999999999999999999999998888888 889999999999999999999999999 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
++++
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8765
|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=133.08 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=71.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+..++..++|++|+|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3459999999999999999999999999999999876 899999999999999999988223445999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++.+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987753
|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-17 Score=134.53 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=75.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|+.| +. .++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~--~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HT--SNDPYCFVEFYEHRDAAAALAAM--NGRKILGKEVKVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC-CC--SSCCEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec-CC--CCCCEEEEEECCHHHHHHHHHHh--CCCCcCCCeEEEE
Confidence 3469999999999999999999999999999999987 43 36899999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9987653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=163.32 Aligned_cols=270 Identities=9% Similarity=0.017 Sum_probs=148.4
Q ss_pred cHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-----ChHHH
Q 004006 280 NWQAVVSAFERIKK-PSRREFGLMVNYYARRGDM---HRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-----DMEEA 350 (779)
Q Consensus 280 ~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 350 (779)
++......|.+... -+...+..|...|...|+. ++|+.+|++..+. +...+..+...+...+ ++++|
T Consensus 18 ~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 34555555554321 2444566677888888988 9999999999864 5677777777555555 78999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH---HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004006 351 LSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA---ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (779)
Q Consensus 351 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 427 (779)
+..|++..+.| +...+..|...|...+..++ +.+.+.+....+ +...+..|...|...+.++++.+....+
T Consensus 94 ~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 94 ESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 99999999976 34478888888887766444 455555555443 4667778888888887666555554333
Q ss_pred HHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc----CCHHHHHHHHHHHHHC
Q 004006 428 EEEGIDAPIDIYHMMMDGYTIIG---NEEKCLIVFERLKECGFSPSIISYGCLINLYTKI----GKVSKALEVSKVMKSS 500 (779)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~ 500 (779)
.+.-...+...+..|..+|...| +.++|++.|.+..+.|.. +...+..|..+|... +++++|++.|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 33222233446777777777777 777777777777776532 444445555555444 56677777776665 3
Q ss_pred CCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHH
Q 004006 501 GIKHNMKTYSMLING-F--LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMG-----NMDRAIHIVKEMQ 568 (779)
Q Consensus 501 ~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~ 568 (779)
| +...+..|... | ...+++++|+.+|++..+.| +...+..|..+|. .| ++++|+.+|++..
T Consensus 246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 2 34445555554 3 34566666666666666554 4455555555554 33 5555555555444
|
| >1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=138.35 Aligned_cols=83 Identities=25% Similarity=0.452 Sum_probs=77.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++. ||..|+|+.|+|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD-PASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC-TTTSSCCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-CCCCCcCceEEEEeCCHHHHHHHHHh---CCcEECCEEEEEE
Confidence 3469999999999999999999999999999999999 88999999999999999999999964 8999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9987754
|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=138.41 Aligned_cols=81 Identities=31% Similarity=0.455 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++||.|.+|+|+++ +.+|+++|||||+|.+.++|++|++.+ |+ .|+|+.|+|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~~--~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD-RQTGKSRGYGFVTMADRAAAERACKDP--NP-IIDGRKANVN 91 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC-SSSCCCCSEEEEEESSHHHHHHHHTCS--SC-EETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhC--CC-cCCCEEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999998 88 8999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99654
|
| >2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=136.98 Aligned_cols=83 Identities=24% Similarity=0.444 Sum_probs=76.4
Q ss_pred ccceEEeccCCCcCChHHHH---HHHhccCCeeEEEEecCCCCC---CCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 150 QEGKIFVGNLPNWIKKHLVM---EFFRQFGPIKNVILIKGYNNF---EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
+.++|||+|||+++++++|+ ++|++||.|.+|+|+++ +.+ ++++|||||+|.+.++|++|++.| ||..|+|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~-~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l--ng~~~~g 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS-TSYAGSQGPSASAYVTYIRSEDALRAIQCV--NNVVVDG 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECC-SSCCSSSCCCEEEEEEESSHHHHHHHHHHH--TTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecC-CCcCccCCCCeEEEEEECcHHHHHHHHHHh--CCCEECC
Confidence 34699999999999999999 99999999999999988 654 456699999999999999999999 9999999
Q ss_pred eEEEEEecCCcc
Q 004006 224 RVLTVKLDDGRR 235 (779)
Q Consensus 224 ~~~~v~~~~~~~ 235 (779)
+.|+|++++++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=139.07 Aligned_cols=79 Identities=14% Similarity=0.333 Sum_probs=72.4
Q ss_pred cceEEeccCCCcCChHHHH----HHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 151 EGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
+++||||||++.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|.+|+..| ||..|.|++|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~----~~~~rG~aFV~F~~~~~A~~Ai~~l--ng~~l~gr~l 102 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL----SDDNSGKAYIVFATQESAQAFVEAF--QGYPFQGNPL 102 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC----CCSSCCCEEEEESSHHHHHHHHHHS--TTCCCTTSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc----CCCcCCEEEEEECCHHHHHHHHHHH--CCCEeCCCEE
Confidence 3599999999999999876 6999999999988753 5889999999999999999999999 9999999999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+|++++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998774
|
| >2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-18 Score=138.26 Aligned_cols=83 Identities=18% Similarity=0.361 Sum_probs=78.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhc-cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce-eeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQ-FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~-~~~~~~~ 227 (779)
+.++|||+|||+++|+++|+++|++ ||.|.+|+|+.| + +|+++|||||+|.+.++|.+|++.| ||.. ++|+.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~g~~l~ 83 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-Q-TGVSKGYGFVKFTDELEQKRALTEC--QGAVGLGSKPVR 83 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC-T-TCCEEEEEEEEESCHHHHHHHHHHT--TTCCSSSSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHHHc--cCCcccCCEeEE
Confidence 4469999999999999999999999 999999999999 6 9999999999999999999999999 9999 9999999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999977643
|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-18 Score=136.02 Aligned_cols=80 Identities=34% Similarity=0.529 Sum_probs=73.8
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||.++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.+ |.+|+..| ||..++|+.|+|++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~-a~~a~~~l--~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD-RETKKPKGFGFVEMQEES-VSEAIAKL--DNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC-SSSCCCCEEEEEEECTTH-HHHHHHTS--CSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc-CCCCCcceEEEEEECCHH-HHHHHHHh--CCCEECCeEEEEEEc
Confidence 48999999999999999999999999999999999 889999999999999999 99999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
.+..
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7663
|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-17 Score=133.14 Aligned_cols=83 Identities=27% Similarity=0.477 Sum_probs=76.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|+.+ + +.++|||||+|.+.++|.+|+..| ||..|+|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~--~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC-T--TTTCCEEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-C--CCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999987 3 338999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99877543
|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-17 Score=135.02 Aligned_cols=80 Identities=28% Similarity=0.527 Sum_probs=74.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.|..|+|..+ ++++|||||+|.+.++|.+|++.| ||..|+|+.|+|++
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR----RGGPPFAFVEFEDPRDAEDAVYGR--DGYDYDGYRLRVEF 95 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS----SSSSCCEEEEESCHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 459999999999999999999999999999999765 668999999999999999999999 99999999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987753
|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=135.26 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=75.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.|..++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLSG 91 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE-CTTSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe-CCCCCEeeEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEEe
Confidence 359999999999999999999999999999999998 889999999999999999999999999 99999999999998
Q ss_pred cCC
Q 004006 231 DDG 233 (779)
Q Consensus 231 ~~~ 233 (779)
+++
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
|
| >2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-17 Score=132.76 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=75.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|+. ++..++|+.|+|.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD-LKTGHSKGFGFVRFTEYETQVKVMS----QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHH----SCEEETTEEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEec-CCCCCccceEEEEECCHHHHHHHHH----cCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999999 8899999999999999999999996 5889999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqg_A 89 LPNSKQ 94 (103)
T ss_dssp CCCTTC
T ss_pred ecCCCC
Confidence 998764
|
| >2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=134.98 Aligned_cols=79 Identities=28% Similarity=0.423 Sum_probs=73.5
Q ss_pred cceEEeccCCCcC------ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 151 EGKIFVGNLPNWI------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 151 ~~~~~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
+++|||||||+.+ |+++|+++|++||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~---~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC---CBTTBSCCEEEEEECSSSHHHHHHHHC--SSEECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee---CCCCCeeeEEEEEECCHHHHHHHHHHh--CCcccCCC
Confidence 4599999999999 789999999999999999988 357999999999999999999999999 99999999
Q ss_pred -EEEEEecCCc
Q 004006 225 -VLTVKLDDGR 234 (779)
Q Consensus 225 -~~~v~~~~~~ 234 (779)
+|+|+++.+.
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998654
|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=132.12 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=75.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+++|.++ +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME---NGKSKGCGVVKFESPEVAERACRMM--NGMKLSGREIDVR 81 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHH--TTCCBTTBCCCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999874 7899999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 998764
|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=133.48 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=72.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++| .|.+|+|+.| +. |+++|||||+|.+.++|.+|+ .+ ||..|+||.|.|..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d-~~-g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKD-HV-GRNNGNGLVKFLSPQDTFEAL-KR--NRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCC-TT-CCCCSEEEEECSSHHHHHHHH-HT--TTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEEC-CC-CCCCeEEEEEECCHHHHHHHH-hc--CCCeECCeEEEEEE
Confidence 3599999999999999999999999 8999999998 55 999999999999999999999 67 99999999999988
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
+..+
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 7544
|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=140.49 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=78.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISVD 97 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-TTTSSBCSCEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 986554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=179.42 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004006 610 TVHTFNALILGLVEKRQMEKAIEILDEMTL---AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686 (779)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 686 (779)
-..+||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345677777777777777777777766553 35677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004006 687 LLKACCKSGRM-QSALAVTKEMSAQKIPRNTFVYNILIDGWARR 729 (779)
Q Consensus 687 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 729 (779)
||.+|++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 77777777763 56777777777777777777777776555443
|
| >2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=135.27 Aligned_cols=83 Identities=24% Similarity=0.493 Sum_probs=77.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|+.. ||..|+|+.|+|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD-KTTNQSRGFGFVKFKDPNCVGTVLAS---RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC-SSSCCEEEEEEEEESSTTHHHHHHHH---CSEEETTEEEBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCCcceEEEEEECCHHHHHHHHHh---CCCeECCEEEEEE
Confidence 4469999999999999999999999999999999999 88999999999999999999999975 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9987753
|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-17 Score=133.08 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=71.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..++|||||||+++++++|+++|++|| .|..++|..+ +++|||||+|.+.++|++|++.| ||..|+||.|+|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-----~~rGfaFV~F~~~e~A~~Ai~~l--ng~~l~Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-----DFDGTGALEFPSEEILVEALERL--NNIEFRGSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-----SSSCCEEEEESSHHHHHHHHHHT--TTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-----CCCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 346999999999999999999999999 8999988643 46999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
++++.+.
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9987653
|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=139.90 Aligned_cols=79 Identities=24% Similarity=0.461 Sum_probs=74.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||..+++++|+++|++||.|.+++|++| +.+|+++|||||+|.+.++|.+|++.+ ||..|+|+.|+|+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 138 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC-TTTCCCCSEEEEEESCHHHHHHHHHHS--TEEEETTEEEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec-CCCCCcCcEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3459999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ec
Q 004006 230 LD 231 (779)
Q Consensus 230 ~~ 231 (779)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
|
| >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-17 Score=141.26 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=74.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCC---eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
+.++|||+|||+++|+++|+++|++||. |.+|+|++| +. |+++|||||+|.+.++|++|++ + ||..|+||.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d-~~-g~srG~aFV~F~~~e~a~~Al~-~--~g~~l~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYT-RE-GRQSGEAFVELGSEDDVKMALK-K--DRESMGHRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEEC-SS-SCEEEEEEEECSSHHHHHHHHT-T--TEEESSSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEEC-CC-CCCCeEEEEEECCHHHHHHHHh-c--CCCEECCEEE
Confidence 3469999999999999999999999999 899999998 66 9999999999999999999999 8 9999999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|.++..+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-17 Score=135.52 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=76.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 89 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED-K-DGKSRGIGTVTFEQSIEAVQAISMF--NGQLLFDRPMHVK 89 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-T-TCSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCCCEEEEE
Confidence 3469999999999999999999999999999999998 5 5999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98654
|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=142.02 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=79.1
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~~G~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V 121 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRV 121 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC-SSSSSCCSCCEEECSCHHHHHHHHTTT--TTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+++++..
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9997764
|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-17 Score=137.40 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=74.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCC---eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
+.++|||+|||+++|+++|+++|++||. |..|+|+.| +. |+++|||||+|.+.++|++|++ + ||..|+||.|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~-~~-g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i 90 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYT-RE-GRQSGEAFVELESEDDVKLALK-K--DRESMGHRYI 90 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEEC-SS-SCEEEEEEEEBSSHHHHHHHGG-G--TTEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEEC-CC-CCCCeEEEEEECCHHHHHHHHh-c--CCCeECCeEE
Confidence 4469999999999999999999999999 899999998 55 9999999999999999999998 8 9999999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998654
|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=133.11 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=70.8
Q ss_pred ccceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++|||+|||++ +|+++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.|..++..|+||+|+|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3469999999998 999999999999999999999865 89999999999999999998833456799999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
++++.+.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9997653
|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-17 Score=134.04 Aligned_cols=85 Identities=29% Similarity=0.437 Sum_probs=77.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|..|+|+.+.+.+|+++|||||+|.+.++|.+|++.| .||..|+|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL-CHSTHLYGRRLVLE 92 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH-HTCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh-ccCCeECCCEEEEE
Confidence 34699999999999999999999999999999999874568999999999999999999999865 15999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998764
|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-17 Score=143.87 Aligned_cols=86 Identities=26% Similarity=0.480 Sum_probs=80.3
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD-KMKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 34569999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred EecCCcchh
Q 004006 229 KLDDGRRLK 237 (779)
Q Consensus 229 ~~~~~~~~~ 237 (779)
+++++...+
T Consensus 114 ~~a~~~~~~ 122 (156)
T 1h2v_Z 114 DWDAGFKEG 122 (156)
T ss_dssp EEESCCCTT
T ss_pred EECCCCCCc
Confidence 999876543
|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-17 Score=135.85 Aligned_cols=83 Identities=22% Similarity=0.409 Sum_probs=77.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCC-eeEEEEe-cCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhC--CceeeceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILI-KGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--g~~~~~~~ 225 (779)
+.++|||||||+++|+++|+++|++||. |.+++++ .| +.+|+++|||||+|.+.++|.+|++.| | +..++|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~~g~~~~~g~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA-ADKMKNRGFAFVEYESHRAAAMARRKL--MPGRIQLWGHQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS-CTTTTTCCEEEEEESSHHHHHHHHTTT--TTCCSCBTTBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC-CCCCCcCcEEEEEecCHHHHHHHHHHh--hCCCceecCCe
Confidence 3469999999999999999999999998 9999999 66 889999999999999999999999988 8 79999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
|+|.+++++.
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999998774
|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-18 Score=137.72 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=74.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.. .++.+ +.+|+++|||||+|.+.++|.+|++ | ||..++|+.|+|.+
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~-~~~g~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLEK 91 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHHH-G--GGCCBTTBCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec-CCCCCcCcEEEEEECCHHHHHHHHh-c--CCcEECCcEEEEEE
Confidence 459999999999999999999999999988 77777 7889999999999999999999998 8 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98764
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-17 Score=144.25 Aligned_cols=82 Identities=24% Similarity=0.416 Sum_probs=78.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|++|+|.+
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRVQM 146 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHS--TTEESSSSEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 469999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98764
|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=127.70 Aligned_cols=73 Identities=23% Similarity=0.519 Sum_probs=68.9
Q ss_pred ceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 152 GKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 152 ~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
++|||||||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.+ ||..++|+.|+|++
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIEXE--SQEMNFGKKLILEV 91 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---------SSEEEEEESSHHHHHHHHHHH--TTSEETTEECEEEE
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEe
Confidence 4999999998 99999999999999999999883 799999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97763
|
| >2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-17 Score=128.45 Aligned_cols=73 Identities=29% Similarity=0.461 Sum_probs=67.9
Q ss_pred ceEEeccCCCcC------ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece-
Q 004006 152 GKIFVGNLPNWI------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR- 224 (779)
Q Consensus 152 ~~~~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~- 224 (779)
++|||||||..+ ++++|+++|++||.|.++++. +.+|+++|||||+|.+.++|.+|++.| ||..++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~---~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC---CBTTBCCCEEEEEESSHHHHHHHHTTS--SSCCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec---CCCCcEeEEEEEEECCHHHHHHHHHHh--cCcccCCce
Confidence 589999999999 679999999999999999987 358999999999999999999999999 99999999
Q ss_pred EEEEE
Q 004006 225 VLTVK 229 (779)
Q Consensus 225 ~~~v~ 229 (779)
+|+|+
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88763
|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-17 Score=136.60 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=75.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCC---eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
...++|||+|||+++|+++|+++|++||. |.+|+|+.| +. |+++|||||+|.+.++|.+|+. + ||..++||.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~-~~-g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN-RD-GKRRGDALIEMESEQDVQKALE-K--HRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCC-TT-STTCSEEEEEBSSHHHHHHHHT-T--TTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEEC-CC-CCEeeEEEEEECCHHHHHHHHH-h--CcceeCCeE
Confidence 34569999999999999999999999998 899999998 66 9999999999999999999998 8 999999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
|+|.++..+.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987653
|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=127.59 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=74.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++| .|.+|+|+++ .+|+++|||||+|.+.++|.+|+. + ||..|+|+.|+|.+
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~--~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-C--NREYMGGRYIEVFR 83 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-S--CSEEETTEEEEEEE
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-h--CCceeCCcEEEEEE
Confidence 4599999999999999999999999 9999999987 679999999999999999999999 9 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
++++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9776
|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-17 Score=131.70 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=70.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||.++++++|+++|++||.|.++++.+. +|||||+|.+.++|.+|+..| ||..++|+.|+|.+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE-------KGCCFIKYDTHEQAAVCIVAL--ANFPFQGRNLRTGW 97 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECCCCB
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC-------CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEe
Confidence 359999999999999999999999999999999855 899999999999999999999 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-17 Score=126.09 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=71.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+|||+|||+++++++|+++|++||.|.+++++.| +.+|+++|||||+|.+.++|.+|++ . +|..++|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~-~--~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFITFKEEEPVKKIME-K--KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS-CCCSSSCCCEEEECSSSHHHHHHHT-T--SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCCEEEEEECCHHHHHHHHH-h--CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999999 8899999999999999999999997 3 899999999999875
|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-17 Score=130.85 Aligned_cols=78 Identities=27% Similarity=0.505 Sum_probs=73.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v 83 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVEL--DNMPLRGKQLRV 83 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHH--TTCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCEEEEEECCHHHHHHHHHHh--CCCEeCCceEEE
Confidence 34469999999999999999999999999999999876 899999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.+++++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9997764
|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.7e-17 Score=135.37 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=75.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCe-eEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPI-KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+.++|||+|||+++|+++|+++|++||.| .+|+|+.| + +|+++|||||+|.+.++|.+|++. ||..|+|+.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~v 88 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD-N-NGQGLGQALVQFKNEDDARKSERL---HRKKLNGREAFV 88 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC-T-TSSCSSCEEEECSSHHHHHHHGGG---CSEEETTEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHh---CCCccCCeEEEE
Confidence 34599999999999999999999999999 89999999 6 899999999999999999999863 999999999999
Q ss_pred EecCCcch
Q 004006 229 KLDDGRRL 236 (779)
Q Consensus 229 ~~~~~~~~ 236 (779)
.++..+..
T Consensus 89 ~~a~~~~~ 96 (114)
T 2cpy_A 89 HVVTLEDM 96 (114)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99976643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-14 Score=143.49 Aligned_cols=226 Identities=11% Similarity=0.127 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--C----HhHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--S----LVTY 369 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~----~~~~ 369 (779)
...|..+...+...|++++|+..|+++.+.. .+..+|..+..+|...|++++|++.|++.++..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456778888888888888888888888876 577888888888888888888888888887643111 1 5777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
..++..|.+.|++++|+..|+++..... + ...+.+.|++++|.+.++++.... +.+..++..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 8888888888888888888888877632 2 234556677777777777777653 33455666667777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 450 GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529 (779)
Q Consensus 450 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (779)
|++++|+..|+++.+.... +..++..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|.+.|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777777665322 45666667777777777777777777666643 234566666666666777777777666
Q ss_pred HHHHHC
Q 004006 530 EDVMRD 535 (779)
Q Consensus 530 ~~~~~~ 535 (779)
+++.+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-17 Score=139.38 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=75.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++||.|.++.++.+ +.+|+++|||||+|.+.++|.+|+. + ||..|+||.|+|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEE-CCCCCCCeEEEEEECCHHHHHHHHH-h--CCCeECCcEEEEE
Confidence 3469999999999999999999999999998767777 6789999999999999999999999 8 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986653
|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=143.87 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=78.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+++|||+|||+.+++++|+++|++||.|..|+|+.+ +.+|+++|||||+|.+.++|.+|+..| ||..|+|+.|+|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec-CCCCcEeeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
++.++..+
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99766433
|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-17 Score=132.32 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=72.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.+ +|+|+.| + +|+++|||||+|.+.++|++|+ .+ |+..|+||.|+|..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIG-P-DGRVTGEADVEFATHEDAVAAM-AK--DKANMQHRYVELFL 88 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEES-S-SSCEEEEEEEECSSSHHHHHHH-TT--SSCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEEC-C-CCCEeeEEEEEECCHHHHHHHH-Hh--CCCeECCcEEEEEE
Confidence 3599999999999999999999999954 9999999 6 8999999999999999999999 46 99999999999998
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86553
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=142.16 Aligned_cols=224 Identities=15% Similarity=0.160 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--C----cccHHH
Q 004006 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP--T----SRTFMP 581 (779)
Q Consensus 508 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~~ 581 (779)
.+..+...+...|++++|+.+|+++.+.. .+...+..+..++...|++++|+..|+++....... + ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444555555555555555554443 344455555555555555555555555544432111 0 344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004006 582 IIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD 661 (779)
Q Consensus 582 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 661 (779)
+...|...|++++|+..|+++.+.. ++. ..+.+.|++++|+..++++.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 5556666666666666666665532 221 23455566777777777776643 2334566677777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (779)
+++|+..++++++.. +.+..++..++.+|...|++++|...++++.+.+ +.+...|..++.+|.+.|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888777777765 4467777778888888888888888888877654 55677778888888888888888888888
Q ss_pred HHHc
Q 004006 742 MKQE 745 (779)
Q Consensus 742 m~~~ 745 (779)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7763
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-14 Score=149.72 Aligned_cols=249 Identities=8% Similarity=0.035 Sum_probs=203.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD-MEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+...|..+...+.+.|++++|+..|+++++.+.. +..+|+.+..+|...|+ +++|+..|+++++.... +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 3455777888899999999999999999998533 67889999999999996 99999999999997644 789999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNE 452 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 452 (779)
.+|.+.|++++|+..|+++++.+.. +..+|..+..++.+.|++++|++.|+++++.+ +.+..+|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999998766 88999999999999999999999999999986 5578889999999988 6664
Q ss_pred HHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 004006 453 EKC-----LIVFERLKECGFSPSIISYGCLINLYTKIG--KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK----- 520 (779)
Q Consensus 453 ~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----- 520 (779)
++| +..|++.++.... +...|..+..++.+.| ++++|++.+.++ +. ...+...+..+..+|.+.+
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 5788888876433 6778888888888887 688898888887 33 2446778888888888763
Q ss_pred ----CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 004006 521 ----DWANVFAVFEDV-MRDGLKPDVVLYNNIIRAF 551 (779)
Q Consensus 521 ----~~~~a~~~~~~~-~~~g~~~~~~~~~~l~~~~ 551 (779)
.+++|+.+|+++ .+.+.. ....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 258888888888 554322 345565555544
|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=130.41 Aligned_cols=76 Identities=26% Similarity=0.496 Sum_probs=70.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.+|+++ +|||||+|.+.++|.+|++.| ||..++|+.|+|.+
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEV--HGKSFANQPLEVVY 99 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 3599999999999999999999999999999987 689999999999999999999 99999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
++++..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9877543
|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=130.03 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=74.4
Q ss_pred ccceEEeccCCCcCChHHHH----HHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
++++|||+|||+++++++|+ ++|++||.|.+|++.. +|+++|||||+|.+.++|.+|++.| ||..++|+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~ 80 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDKP 80 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH----HHHHTTCEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc----CCCcCcEEEEEeCCHHHHHHHHHHh--CCCEECCcE
Confidence 44699999999999999999 9999999999999874 4788999999999999999999999 999999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
|+|++++++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998774
|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-16 Score=131.95 Aligned_cols=81 Identities=14% Similarity=0.313 Sum_probs=75.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--------
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-------- 221 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~-------- 221 (779)
+.++|||+|||+++++++|+++|++||.|.+++|+.| + +|+++|||||+|.+.++|.+|++.| ||..+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-S-SGTSRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S-SSCEEEEEEEEESCHHHHHHHHHHH--BTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHh--CCCEEcCCccccC
Confidence 3469999999999999999999999999999999999 6 8999999999999999999999999 99999
Q ss_pred eceEEEEEecCCc
Q 004006 222 HGRVLTVKLDDGR 234 (779)
Q Consensus 222 ~~~~~~v~~~~~~ 234 (779)
.|++|+|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 6888999999765
|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=127.53 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=71.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee--ceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~--~~~~~v 228 (779)
.++|||+|||+++|+++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.| ||..++ |+.|+|
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l--~g~~~~~~g~~l~V 87 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKM--RGFPLGGPDRRLRV 87 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHH--TTCBCSSSSCBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-------CCEEEEEECCHHHHHHHHHHH--CCCEeCCCCcEEEE
Confidence 459999999999999999999999999999999865 899999999999999999999 999999 999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
++++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998874
|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=130.00 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=74.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++|+ .++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTD-RETGSSKGFGFVDFNSEEDAKAAKEAM--EDGEIDGNKVTLD 87 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 346999999999999999999999874 6778888 888999999999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99887543
|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-17 Score=153.09 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=77.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccC--CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.++|||+||++++|+++|+++|++|| .|.+|+|++| +.||++||||||+|.+.++|.+||+.| ||..|+|+.|+|
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d-~~tg~skGfaFV~f~~~~~a~~Ai~~l--ng~~~~Gr~l~V 144 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPVV 144 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEEC-TTTCCEEEEEEEEESCTTHHHHHHTTS--TTSCBTTBCCEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCeECCEEeEE
Confidence 35999999999999999999999999 9999999999 899999999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++++..
T Consensus 145 ~~a~~~~ 151 (229)
T 3q2s_C 145 TPVNKQF 151 (229)
T ss_dssp EECCHHH
T ss_pred EECCCCc
Confidence 9997654
|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=129.63 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=72.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.| +++.+ .+|+++|||||+|.+.++|++|++.| ||..|+|+.|+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN--QNGKSKGYAFIEFASFEDAKEALNSC--NKREIEGRAIRLE 86 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC--SSSCBCSEEEEECSSHHHHHHHHHHT--SSEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC--CCCCEeeEEEEEECCHHHHHHHHHHh--CCCEeCCeEEEEE
Confidence 34699999999999999999999999987 56654 57999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987753
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-15 Score=139.93 Aligned_cols=197 Identities=13% Similarity=0.036 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...+..+...+.+.|++++|+..|+++++... .+...+..+..++.+.|++++|+..|++.++... .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 445566777778888888888888888777643 2666777777788888888888888888777643 25677777777
Q ss_pred HHHcc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004006 375 GFAKM-----------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM 443 (779)
Q Consensus 375 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 443 (779)
+|.+. |++++|+..|+++.+..+. +...+..+..+|...|++++|++.|++..+.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 7777777777777766444 56666677777777777777777777776665 4566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
.+|...|++++|+..|+++.+.... +...+..+..++.+.|++++|+..|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666654321 4555666666666666666666666544
|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=131.39 Aligned_cols=77 Identities=22% Similarity=0.262 Sum_probs=71.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+|..+ +|||||+|.+.++|.+|++.| ||..++|++|+|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 79 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-------GITAIVEFLEPLEARKAFRHL--AYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-------SSCEEEEESCHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEeCCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 4569999999999999999999999999999998765 899999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
|+....
T Consensus 80 ~a~~~~ 85 (111)
T 1whx_A 80 WAPIGV 85 (111)
T ss_dssp EEETTT
T ss_pred ECCCCc
Confidence 986653
|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=133.05 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=74.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+|||+++|+++|+++|++||.|.+|+++.+ ++++|||||+|.+.++|.+|+..| ||..++|+.|+|.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT----PETRGTAYVVYEDIFDAKNAVDHL--SGFNVSNRYLVVLY 81 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS----TTTTTCEEEEESSHHHHHHHHHHH--TTCBSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 359999999999999999999999999999999876 566999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 97654
|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=128.86 Aligned_cols=78 Identities=18% Similarity=0.415 Sum_probs=73.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
...++|||+|||..+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 93 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSV--NGTTIEGHVVKC 93 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHc--CCCEECCcEEEE
Confidence 45579999999999999999999999999999999987 899999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.+++++.
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4g_A 94 YWGKESP 100 (109)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9998764
|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.9e-18 Score=141.83 Aligned_cols=86 Identities=29% Similarity=0.419 Sum_probs=80.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeE--------EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
.+.++|||+|||+++++++|+++|++||.|.. |+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~ 81 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWF--DGKE 81 (116)
Confidence 34569999999999999999999999999998 999998 889999999999999999999999999 9999
Q ss_pred eeceEEEEEecCCcchh
Q 004006 221 FHGRVLTVKLDDGRRLK 237 (779)
Q Consensus 221 ~~~~~~~v~~~~~~~~~ 237 (779)
++|+.|+|++++++..+
T Consensus 82 ~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADF 98 (116)
Confidence 99999999999877544
|
| >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=128.00 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=69.8
Q ss_pred ccceEEe--ccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee-----e
Q 004006 150 QEGKIFV--GNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-----H 222 (779)
Q Consensus 150 ~~~~~~v--~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~-----~ 222 (779)
++.+||| |||++++++++|+++|++||.|.+|.|..+ ||||||+|.+.++|++|++.| ||..+ +
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-------rgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHHHHHT--TTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCEEccccCC
Confidence 3458999 889999999999999999999999988765 899999999999999999999 99998 7
Q ss_pred ceEEEEEecCCc
Q 004006 223 GRVLTVKLDDGR 234 (779)
Q Consensus 223 ~~~~~v~~~~~~ 234 (779)
|++|.|.+++..
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 999999998654
|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=130.29 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=73.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeE-EEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.| .+|+++|||||+|.+.++|.+|+.. ||..++||.|+|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~--~~g~~~G~afV~F~~~~~a~~A~~~---~~~~~~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD--FQGRSTGEAFVQFASQEIAEKALKK---HKERIGHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC--SSSCBCSEEEEEESSHHHHHHHHTT---TTCCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC--CCCCcceEEEEEECCHHHHHHHHHh---CcchhCCcEEEE
Confidence 3469999999999999999999999999997 888886 6799999999999999999999974 899999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
..+..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9886553
|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=128.10 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=70.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|. ++++. ++++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-----QGPRRRAFLHYPDSAAAQQAVSCL--QGLRLGTDTLRVAL 90 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-----ETTTTEEEEECSSHHHHHHHHHHH--TTCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-----CCCCcEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEEE
Confidence 45999999999999999999999999997 66664 466999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-16 Score=128.10 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=71.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec-----e
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG-----R 224 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~-----~ 224 (779)
..++|||+|||+++|+++|+++|++||.|.+|+|+.| |||||+|.+.++|++|++.| ||..|+| +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHS--SSEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHH--CcCCccCCcCcce
Confidence 3469999999999999999999999999999999875 89999999999999999999 9999999 9
Q ss_pred EEEEEecCCcch
Q 004006 225 VLTVKLDDGRRL 236 (779)
Q Consensus 225 ~~~v~~~~~~~~ 236 (779)
.|+|.+++++..
T Consensus 84 ~i~V~~a~~~~~ 95 (108)
T 1x4c_A 84 YIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEESSCCSC
T ss_pred EEEEEeCCCCCC
Confidence 999999987643
|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=128.27 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=71.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||+|||+++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+..+ ||..++|+.|+|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 85 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSL 85 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE------EETTEEEEEEEEEESSHHHHHHHHHHT--TEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe------CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 345699999999999999999999999988765 246889999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.+++++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9998774
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=137.63 Aligned_cols=195 Identities=12% Similarity=0.022 Sum_probs=87.8
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..+...+.+.|++++|+..|++.++... .+...+..+..++.+.|++++|+..|+++.+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 444555555556666666666666666655432 24555555666666666666666666666555433 4555555555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004006 410 AQCQT-----------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478 (779)
Q Consensus 410 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 478 (779)
+|... |++++|+..|++..+.+ +.+..++..+..+|...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 44444444444444432 2233344444444444444444444444444433 2333444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (779)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (779)
.+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444444443321 1123333334444444444444444333
|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-17 Score=135.10 Aligned_cols=84 Identities=14% Similarity=0.300 Sum_probs=73.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||+++|+++|+++|++||.|..+.+..+ ..+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR-MMTGRMRGQAFITFPNKEIAWQALHLV--NGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEE-EECSSSCSEEEEECSSHHHHHHHHHHS--TTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEE-cCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 3469999999999999999999999999954433333 337899999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9987753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-16 Score=171.39 Aligned_cols=151 Identities=15% Similarity=0.268 Sum_probs=118.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRR---SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651 (779)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 651 (779)
-..+|++||++|++.|++++|..+|++|.+ .|+.||+.+||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345799999999999999999999987764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 004006 652 IMHGYASLGD-TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN------TFVYNILID 724 (779)
Q Consensus 652 li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 724 (779)
||.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+.+ +++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 4788899999999999999999998887665543 33333333 2233333 334455556
Q ss_pred HHHhcC
Q 004006 725 GWARRG 730 (779)
Q Consensus 725 ~~~~~g 730 (779)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 665554
|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-16 Score=133.36 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=71.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCee--EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.+.++|||+|||+++|+++|+++|++| .|. +|+|+.| +. |+++|||||+|.+.++|++|++. ++..|+||.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d-~~-GrsrGfaFV~F~~~e~A~~Al~~---~~~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD-PE-GKITGEAFVQFASQELAEKALGK---HKERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC-SS-SSSCSEEEEEESSTTHHHHHHTT---TTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC-CC-CCCceEEEEEECCHHHHHHHHHH---CCCEECCEEE
Confidence 344699999999999999999999999 566 8999998 66 99999999999999999999974 7899999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|..+..+
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99987544
|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=132.69 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=73.8
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCe----eEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPI----KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
.+.++|||+|||+++|+++|+++|++||.| .+|+|+.| + +|+++|||||+|.+.++|.+|++. ||..|+||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~-~gr~~G~aFV~F~~~~~A~~Al~~---~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-P-DGRPTGDAFVLFACEEYAQNALRK---HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-T-TSCEEEEEEECCSSHHHHHHHHTT---TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHHh---CCCeeCCe
Confidence 456799999999999999999999999975 68999988 4 799999999999999999999973 89999999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.|.|..+..+.
T Consensus 96 ~i~V~~a~~~e 106 (123)
T 2dha_A 96 YIELFRSTAAE 106 (123)
T ss_dssp EECCEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999886553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-13 Score=133.56 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
+...+..+...|...|++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566777778888888888888888887743 55677777777777 788888888888887764 677777
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 371 IIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMM 442 (779)
Q Consensus 371 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (779)
.+...|.. .+++++|+.+|+++.+.+ +..++..+..+|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77778877 788888888888877763 66777777777777 777777777777777754 45566666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 443 MDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (779)
Q Consensus 443 ~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (779)
...|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777766653 45566666666666 667777777776666653 2455555666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCC
Q 004006 515 GFLK----LKDWANVFAVFEDVMRDG 536 (779)
Q Consensus 515 ~~~~----~~~~~~a~~~~~~~~~~g 536 (779)
+|.+ .+++++|+..|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666665543
|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-16 Score=123.13 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=70.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++||.|.+++++ +|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQL--NGKEVKGKRINVE 76 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 44699999999999999999999999999999997 359999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998764
|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.6e-16 Score=123.38 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=70.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+++++ +|||||+|.+.++|.+|++.+ ||..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNL--HHYKLHGVNINVE 75 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHh--cCCccCCcEEEEE
Confidence 34699999999999999999999999999999987 589999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-14 Score=145.25 Aligned_cols=248 Identities=8% Similarity=0.103 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 004006 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGN-MDRAIHIVKEMQKERHRPTSRTFMPIIHG 585 (779)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (779)
..|..+..++.+.|++++|+..|+++++.... +...|+.+..++...|+ +++|+..|++++..... +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 44555566666666677777777666665443 55666666667777775 77777777777766555 56666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 004006 586 FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS-LGDTGK 664 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~ 664 (779)
+...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++.+ +-+...|+.+..+|.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 77777777777777777776554 66777777777777777777777777777664 3456677777777777 444466
Q ss_pred H-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------
Q 004006 665 A-----FEYFTKLRNEGLELDVFTYEALLKACCKSG--RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG------- 730 (779)
Q Consensus 665 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 730 (779)
| +..|++++... +.+...|+.+..++...| ++++|++.++++ +.+ +.+...+..|+++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 6 47777777765 446777777777777777 577888888777 433 556677788888887764
Q ss_pred --CHHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHHHh
Q 004006 731 --DVWEAADLMQQM-KQEGVQPD-VHTYTSFINACKC 763 (779)
Q Consensus 731 --~~~~A~~~~~~m-~~~g~~pd-~~~~~~l~~a~~~ 763 (779)
.+++|+++++++ .+ +.|+ ...|..+...+..
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 257888888887 54 3444 3456656555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-14 Score=139.79 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGG 375 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~ 375 (779)
.+..+...+...|++++|+..|+++.+... .+...+..+..+|...|++++|++.|++.++.+..+ ....|..++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 345567788888999999999999888743 255578888888888899999999988888743111 13347888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
|...|++++|+..|+++.+.... +..++..++.+|...|++++|++.|++..+.. +.+..++..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888899998888888887554 66788888888888888888888888887763 44566677777344445588888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGK---VSKALEVSKVMKSSG-IKHN------MKTYSMLINGFLKLKDWANV 525 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~a 525 (779)
++.|+++.+.... +...+..+..++...|+ +++|...++++.+.. -.++ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888775322 45667777777777777 777777777666531 0112 24556666667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 004006 526 FAVFEDVMRDGLKPDVVLYNN 546 (779)
Q Consensus 526 ~~~~~~~~~~g~~~~~~~~~~ 546 (779)
...|+++.+.... +...+..
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~ 260 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHhcCcc-HHHHHHH
Confidence 7777777665432 3434333
|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-16 Score=124.67 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=70.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc--CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
+.++|||+|||+.+|+++|+++|++| |.|..+++. +|||||+|.+.++|.+|+..| ||..++|+.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 82 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKAL--NGKVLDGSPIE 82 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHH--SSEEETTEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHh--CCCEeCCcEEE
Confidence 44699999999999999999999999 899988775 679999999999999999999 99999999999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.+++++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999987753
|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=128.40 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=71.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN------PPGFAFVEFEDPRDAEDAVRGL--DGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS------SSSEEEEECSSHHHHHHHHHHH--HHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCEEEEEECCHHHHHHHHHHH--CCCeECCcEEEEEEc
Confidence 48999999999999999999999999999999875 6899999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
+++.
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-13 Score=131.90 Aligned_cols=224 Identities=12% Similarity=-0.040 Sum_probs=161.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYG 405 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (779)
+..++..+...|...|++++|++.|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45667777777778888888888888877743 56677777777877 888888888888887764 667777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 004006 406 NIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCL 477 (779)
Q Consensus 406 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 477 (779)
.+..+|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777764 56677777777777 777777777777777754 45566667
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 478 INLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 478 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
..+|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777776 777777777777777653 45666666777777 777777777777776653 2455666666
Q ss_pred HHHh----CCCHHHHHHHHHHHHHcC
Q 004006 550 AFCG----MGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 550 ~~~~----~g~~~~A~~~~~~~~~~~ 571 (779)
+|.+ .+++++|++.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 667777777777666654
|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-16 Score=136.22 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=74.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++|| |.+|+|+.| +. |+++|||||+|.+.++|++|+ .+ |+..|+||.|+|.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d-~~-g~srGfaFV~F~~~e~A~~Al-~~--~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG-PD-GRVTGEADVEFATHEEAVAAM-SK--DRANMQHRYIELF 118 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS-SS-SCSSCCCEEECSHHHHHHHHT-TC--CSCSSSSCCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC-CC-CCCceEEEEEeCCHHHHHHHH-hh--CCCEECCEEEEEE
Confidence 346999999999999999999999999 779999998 65 999999999999999999999 67 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
.+..+..
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9876643
|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=121.98 Aligned_cols=76 Identities=22% Similarity=0.456 Sum_probs=70.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++++++|+++|++||.|.+|+++ +|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---------KDYAFVHMERAEDAVEAIRGL--DNTEFQGKRMHVQ 77 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEE
Confidence 44699999999999999999999999999999997 359999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987743
|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-16 Score=128.44 Aligned_cols=80 Identities=21% Similarity=0.476 Sum_probs=74.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||||||+++++++|+++|++||.|.+|+|+.| + +|+++|||||+|.+.++|.+|+. +|..++|+.|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-R-TGVSKGYGFVSFYNDVDVQKIVE----SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-T-TSCEEEEEEEEESSCCCHHHHTT----CCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHh----CCCeECCEEEEEE
Confidence 3469999999999999999999999999999999999 6 89999999999999999999986 7999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++..+.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 986553
|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-16 Score=124.95 Aligned_cols=78 Identities=22% Similarity=0.479 Sum_probs=70.8
Q ss_pred cccceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 149 RQEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.+.++|||||||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.| ||..+.|++|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIECE--SQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHH--TCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHc--CCCeeCCcEEE
Confidence 4556999999999 99999999999999999999884 789999999999999999999 99999999999
Q ss_pred EEecCCcchh
Q 004006 228 VKLDDGRRLK 237 (779)
Q Consensus 228 v~~~~~~~~~ 237 (779)
|++++++...
T Consensus 77 V~~a~~~~~~ 86 (96)
T 2kvi_A 77 LEVSSSNARP 86 (96)
T ss_dssp EEEEECCCC-
T ss_pred EEEcCcCCCC
Confidence 9999766543
|
| >3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=125.62 Aligned_cols=75 Identities=21% Similarity=0.387 Sum_probs=69.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcce-EEEEeCCHHHHHHHHHHhhhCCceeec--eEEEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF-GFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v~ 229 (779)
+|||+||++.+|+++|+++|++||.|.+|+|+.+ .+|| |||+|.+.++|.+|++.| ||..|.| +.|+|+
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~------~~gfqAFVef~~~~~A~~Ai~~L--nG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK------NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE------TTEEEEEEEESCHHHHHHHHHHH--TTCEEETTEEEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC------CCCcEEEEEECCHHHHHHHHHHc--CCCeecCCCcEEEEE
Confidence 8899999999999999999999999999988764 2688 999999999999999999 9999988 999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
|++++.
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998774
|
| >2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=123.61 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=68.2
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcce-EEEEeCCHHHHHHHHHHhhhCCceeec--eEEEEE
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF-GFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v~ 229 (779)
.|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.| ||..|.| +.|+|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~L--nG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-------NGIQAMVEFESVLCAQKAKAAL--NGADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-------SSEEEEEEESSHHHHHHHHHHH--TTCCCBTTBSEEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHh--CCCEecCCCeEEEEE
Confidence 6899999999999999999999999999999642 386 999999999999999999 9999987 699999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998874
|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=125.32 Aligned_cols=77 Identities=22% Similarity=0.446 Sum_probs=70.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+++|+++|+++|++||.|.+|+++ +|||||+|.+.++|.+|++.| ||..|+|+.|+|.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKAMEEM--NGKDLEGENIEIV 78 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHH--CCCccCCCEEEEE
Confidence 34699999999999999999999999999999886 469999999999999999999 9999999999999
Q ss_pred ecCCcchh
Q 004006 230 LDDGRRLK 237 (779)
Q Consensus 230 ~~~~~~~~ 237 (779)
+++++..+
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99776543
|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-16 Score=138.86 Aligned_cols=81 Identities=25% Similarity=0.381 Sum_probs=76.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+++|||+|||+++++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|.+|++.+ ||..|+|+.|+|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~-~g~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDIQ 162 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCC-T-TSSCSCCEEEEESCHHHHHHHHHHS--TTCBCSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCEeeEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 5 8999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.9e-12 Score=137.14 Aligned_cols=233 Identities=9% Similarity=-0.011 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 004006 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAI-HIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDM 601 (779)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 601 (779)
+.+..+|++.+..-. -+...|-..+..+...|+.++|. .+|+......+. +...|...+....+.|++++|..+|+.
T Consensus 326 ~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-SAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445677888777533 37788888888888888888886 999988875432 455566777788888999999999998
Q ss_pred HHHCCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 004006 602 MRRSGC---------IP------------TVHTFNALILGLVEKRQMEKAIEILDEMTLA-GISPNEHTYTTIMHGYASL 659 (779)
Q Consensus 602 ~~~~~~---------~~------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~ 659 (779)
+++... .| ...+|...+....+.|..+.|..+|.++++. + ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 876310 12 1236777777777888899999999998875 2 22334444333333344
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 004006 660 -GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIP--RNTFVYNILIDGWARRGDVWEAA 736 (779)
Q Consensus 660 -g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 736 (779)
++.+.|..+|+..++. .+.+...+..+++.....|+.+.|..+|++....... .....|..++..=.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4589999999999887 4557777788888888899999999999998876421 13457788888888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 004006 737 DLMQQMKQEGVQPDVHTYTSFINAC 761 (779)
Q Consensus 737 ~~~~~m~~~g~~pd~~~~~~l~~a~ 761 (779)
++.+++.+. .|+......+++=|
T Consensus 562 ~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 562 TLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999885 44544444454433
|
| >3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=119.05 Aligned_cols=73 Identities=22% Similarity=0.427 Sum_probs=62.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--eceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~--~~~~~~v 228 (779)
..+|||||||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ + +|..+ +|+.|.|
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~------srGfaFV~F~~~~~A~~----~--~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP------FRAFAFVTFADDKVAQS----L--CGEDLIIKGISVHI 78 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS------CCSEEEEEESCHHHHHH----H--TTCEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC------CCCEEEEEECCHHHHHH----H--cCCCcccCCEEEEE
Confidence 459999999999999999999999999999999864 68999999999999883 4 67665 5999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9998764
|
| >2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=116.12 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=63.9
Q ss_pred eEEeccCCCcCChHH----HHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 153 KIFVGNLPNWIKKHL----VMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
.|||+|||+.+++++ |+++|++|| .|.+| || |||||.|.+.++|.+|++.| ||..+.||+|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l--~G~~l~gr~i~ 77 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRM--ENEDVFGNRII 77 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHH--TTCCSSSSCCE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHh--cCCccCCceEE
Confidence 399999999999987 558999994 99987 33 99999999999999999999 99999999999
Q ss_pred EEecCCcc
Q 004006 228 VKLDDGRR 235 (779)
Q Consensus 228 v~~~~~~~ 235 (779)
|++|+.++
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99998774
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=143.68 Aligned_cols=82 Identities=17% Similarity=0.377 Sum_probs=78.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.+ ||..+.|+.|++.++
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~~--~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVRIMWS 92 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecc-cCCCCccccccceeCCHHHHHHHHHHh--hhhhcCCcccccccc
Confidence 49999999999999999999999999999999999 899999999999999999999999999 999999999999998
Q ss_pred CCcch
Q 004006 232 DGRRL 236 (779)
Q Consensus 232 ~~~~~ 236 (779)
.....
T Consensus 93 ~~~~~ 97 (213)
T 4f02_A 93 QRDPS 97 (213)
T ss_dssp CCCTH
T ss_pred ccccc
Confidence 76643
|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=122.03 Aligned_cols=76 Identities=17% Similarity=0.294 Sum_probs=69.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|+ ++|+++|+++|++||.|.+|+|... +|||||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-------RNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVN 82 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHT--TTEEETTEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC-------CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 3469999996 8999999999999999999998543 899999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
+++++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9987653
|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=119.79 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=68.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||.++++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++.| .||..++|++|+|+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l-~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-------QQCAFIQFATRQAAEVAAEKS-FNKLIVNGRRLNVK 82 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHTT-TTTCEETTEECCEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-------CCEEEEEECCHHHHHHHHHHh-cCCeeECCCEEEEE
Confidence 3459999999999999999999999999999999986 899999999999999999853 28899999999999
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-13 Score=135.98 Aligned_cols=233 Identities=10% Similarity=0.011 Sum_probs=105.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDIYHMMMDGY 446 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 446 (779)
+...+..+...|++++|+..|+++.+..+. +..++..++.+|...|++++|++.|+++.+....++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334444445555555555555555444322 333444555555555555555555555544211111 11244455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVF 526 (779)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (779)
...|++++|+..|++..+.... +..++..+..+|...|++++|+..|++..+.. ..+...|..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443211 33455555555555555555555555554432 223444444441222233555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCC-CCC------cccHHHHHHHHHhcCCHHHHH
Q 004006 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGN---MDRAIHIVKEMQKERH-RPT------SRTFMPIIHGFARAGEMKRAL 596 (779)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~~~~~~a~ 596 (779)
..|+++.+.... +...+..+..++...|+ +++|...|+++..... .++ ...|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555555554322 34444444455544444 4445555544443210 011 023333444444445555555
Q ss_pred HHHHHHHHC
Q 004006 597 EIFDMMRRS 605 (779)
Q Consensus 597 ~~~~~~~~~ 605 (779)
..|+++.+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555444443
|
| >1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=131.03 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=70.6
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec--eEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v~ 229 (779)
.+|||+||++.+|+++|+++|++||.|++|+|..+ +++|||||+|.+.++|.+|++.| ||..|.| +.|+|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~L--nG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 119 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHS--TTBCSSSSCSCEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHh--CCCEecCCCcEEEEE
Confidence 38999999999999999999999999999998754 24799999999999999999999 9999955 999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998774
|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=119.69 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=69.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||||||+++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.+ ||..++|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMF--HQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEE
Confidence 34699999999999999999999999 99999885 34899999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++...
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98655
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=134.57 Aligned_cols=78 Identities=29% Similarity=0.574 Sum_probs=73.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||||||+++|+++|+++|++||.|.+|+|+.| ++|||||+|.+.++|.+|+..| ||..++|++|+|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN------PPGFAFVEFEDPRDAADAVREL--DGRTLCGCRVRVE 143 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS------SCSEEEEEESSHHHHHHHHHHH--SSSCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999876 4899999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-16 Score=137.25 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=72.3
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEE-----ecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-----IKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~-----~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
++++|||||||+++|+++|+++|++||.|..+.+ ++. ..+|+++|||||+|.+.++|.+|+..| ||..|+|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~ 120 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEA--NGYVLFGK 120 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHH--TTBEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHh--CCCEeCCc
Confidence 4569999999999999999999999999876411 111 246999999999999999999999999 99999999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.|+|++++++.
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997764
|
| >2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=121.05 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=72.8
Q ss_pred ccceEEeccCCC-----cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 150 QEGKIFVGNLPN-----WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 150 ~~~~~~v~~l~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
++++|+|+|+.. +-++++|++.|++||.|.+|+|++++..+|+++|||||+|.+.++|.+|++.| ||..++||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l--nG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL--NGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH--TTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH--CCCEECCc
Confidence 456999999963 23689999999999999999999983345789999999999999999999999 99999999
Q ss_pred EEEEEecCCc
Q 004006 225 VLTVKLDDGR 234 (779)
Q Consensus 225 ~~~v~~~~~~ 234 (779)
.|+|.++...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998654
|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=122.73 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=70.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEE-EecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVI-LIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+++|||||||+++++++|+++|++||.|.+++ ++.+ +.+| .|||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-~~~~----~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~ 87 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-SETA----VVNVTYSSKDQARQALDKL--NGFQLENFTLKVA 87 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-SSSE----EEEEEESSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCC----EEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 46999999999999999999999999999994 8877 5543 4999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99876
|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-16 Score=123.77 Aligned_cols=78 Identities=23% Similarity=0.486 Sum_probs=69.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCC-eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC-ceeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG-VEFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g-~~~~~~~~~ 227 (779)
..++|||+|||+++|+++|+++|++||. |..+.+. . +|||||+|.+.++|.+|++.| || ..++|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~-------~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~ 76 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-K-------SGYAFVDYPDQNWAIRAIETL--SGKVELHGKIME 76 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-E-------TTEEEECCSCHHHHHHHHHHH--TTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-C-------CCEEEEEECCHHHHHHHHHHc--cCCeeECCEEEE
Confidence 3459999999999999999999999999 5655553 2 899999999999999999999 99 999999999
Q ss_pred EEecCCcchh
Q 004006 228 VKLDDGRRLK 237 (779)
Q Consensus 228 v~~~~~~~~~ 237 (779)
|++++++..+
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999877533
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-13 Score=131.96 Aligned_cols=201 Identities=12% Similarity=0.013 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+...|...|++++|+.+|+++.+.. ..+..++..+..+|...|++++|++.|+++++... .+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4567778888888999999999999888764 23677888888888888899999998888887643 367788888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
|...|++++|+++|+++...+..+ +...+..++.+|...|++++|++.|+++.+.. +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887721122 45677777788888888888888888877764 3456667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
|+..|+++.+... .+...+..+..++.+.|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777766432 24556666677777777777777777777664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-11 Score=135.50 Aligned_cols=429 Identities=8% Similarity=0.027 Sum_probs=301.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
.+.+..|.+.+..||. |...|..++..+.+.|.++.++.+|++++.. +..+...|...+..-.+
T Consensus 49 ~d~i~~lE~~l~~np~---------------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~ 112 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT---------------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFD 112 (679)
T ss_dssp SCHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHh
Confidence 4567778888999997 7778899999999999999999999999987 35577889999999999
Q ss_pred cCC---hHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHccCCH--------HHHHHHHHHHHHc-CC-CC-ChhhHHHHH
Q 004006 344 GRD---MEEALSCVRKMKEEG-IEMSLVTYSIIVGGFAKMGNA--------EAADHWFEEAKER-HA-TL-NAIIYGNII 408 (779)
Q Consensus 344 ~g~---~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~-~~~~~~~l~ 408 (779)
.++ ++.+.++|++.+... ..++...|..-+....+.++. +...++|+++... |. .+ ....|...+
T Consensus 113 ~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL 192 (679)
T ss_dssp C--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred hCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 999 999999999998863 137888998888776665553 3455888887753 33 33 346777776
Q ss_pred HHHH---------hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC-
Q 004006 409 YAQC---------QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-------------IGNEEKCLIVFERLKEC- 465 (779)
Q Consensus 409 ~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~- 465 (779)
.... ..++++.+..+|++++......-..+|......-.. ..+++.|...+.++...
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5543 234577889999998853211112333222211111 12334455555554321
Q ss_pred -CCC---------------C-----C---HhhHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 466 -GFS---------------P-----S---IISYGCLINLYTKIG-------KVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (779)
Q Consensus 466 -g~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (779)
++. | + ...|...+..--..+ ..+....+|++..... ..+...|...+.
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~ 351 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMAN 351 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 211 0 0 134555554433322 1234566788887753 447888888888
Q ss_pred HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------CCCC---------
Q 004006 515 GFLKLKDWANVF-AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER---------HRPT--------- 575 (779)
Q Consensus 515 ~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~--------- 575 (779)
.+...|+.++|. .+|++....- ..+...|-..+....+.|++++|..+|+.++... ..|+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 888889999997 9999998753 3467778888888999999999999999988641 0121
Q ss_pred ---cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 576 ---SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK-RQMEKAIEILDEMTLAGISPNEHTYTT 651 (779)
Q Consensus 576 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~~~~~~~~~ 651 (779)
...|...+....+.|..+.|..+|.++++.........|...+..-.+. ++.+.|..+|+..++. ..-+...|..
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 2357777888888999999999999998761112334444333333444 4589999999998876 3446667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEGLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (779)
.+......|+.+.|..+|++.+..... -....|..++..-...|+.+.+..+.+++.+..
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888788899999999999999887532 245678888888889999999999999998764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-13 Score=131.11 Aligned_cols=200 Identities=16% Similarity=0.041 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (779)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 621 (779)
..+..+...+...|++++|+.+|+++...... +...+..+...|...|++++|+.+|+++.+.... +...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 44556666666677777777777766665433 4556666677777777777777777777765433 566777777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 004006 622 VEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSA 700 (779)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (779)
...|++++|+.+++++...+..+ +...+..+...|...|++++|..+++++.+.. +.+...+..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877622233 45667777788888888888888888888765 44677888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 701 LAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
..+++++.+.. +.+...+..++..+.+.|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888887754 567777888888888888888888888888874
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-14 Score=139.41 Aligned_cols=121 Identities=12% Similarity=-0.105 Sum_probs=66.4
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH
Q 004006 308 RRGDMHRARQTFENMRARGIE---PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA 384 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 384 (779)
..|++++|+..|+++.+.... .+..+|..+..+|...|++++|+..|+++++... .+..+|..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 445566666666666554211 1234555555666666666666666666655432 245555566666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
|+..|+++.+.... +..++..++.+|.+.|++++|++.|+++.+.
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666665554332 4455555555555555555555555555554
|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=126.06 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=68.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCC---CCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF---EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
..++|||||||+++|+++|+++|++||.|. +.++.+ +.+ |+++|||||+|.+.++|++|++.+ + .++|+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~-~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~--~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHK-AESKSYFPPKGYAFLLFQEESSVQALIDAC--L--EEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTS-SSSCCCSCTTSEEEECCSSHHHHHHHHHHS--E--EETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeec-CCCCCCCCcccEEEEEECCHHHHHHHHHhh--h--hcCCcEE
Confidence 346999999999999999999999999999 888888 666 899999999999999999999987 5 3788888
Q ss_pred EEEecC
Q 004006 227 TVKLDD 232 (779)
Q Consensus 227 ~v~~~~ 232 (779)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 887553
|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=124.39 Aligned_cols=74 Identities=23% Similarity=0.516 Sum_probs=69.2
Q ss_pred cceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.++|||+|||++ +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGE--NGRVLAGQTLDIN 95 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHH--TTCEETTEECCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 359999999999 999999999999999999988 2799999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997543
|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=120.82 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=68.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||||||+++|+++|+++|++||.|.+| +.+ +.+|+ ||||+|.+.++|.+|++ + ||..|+|+.|+|.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~-~~~g~---~afV~f~~~~~a~~ai~-l--~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMD-KDKGV---FAIVEMGDVGAREAVLS-Q--SQHSLGGHRLRVRP 78 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EEC-SSSCC---EEEEEESSHHHHHHHHT-C--SCCEETTEECCCBC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEc-CCCCc---EEEEEECCHHHHHHHHh-c--CCeEECCEEEEEEE
Confidence 3599999999999999999999999999987 555 55665 99999999999999999 8 99999999999998
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.++.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 87654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-14 Score=139.85 Aligned_cols=249 Identities=10% Similarity=-0.031 Sum_probs=190.0
Q ss_pred HHccCChHHHHHHHHHHHHcCC---CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004006 341 YAVGRDMEEALSCVRKMKEEGI---EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNM 417 (779)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (779)
+...|++++|+..|+++++... +.+..++..++..|...|++++|+..|+++.+.... +..+|..++.+|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3456889999999999987532 124678888999999999999999999999887654 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 418 ERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 418 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
++|++.|+++.+.. +.+..++..+..+|...|++++|+..|+++.+.. |+......++..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999874 4467888889999999999999999999988753 44444455556667779999999999777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 004006 498 KSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP---DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (779)
Q Consensus 498 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (779)
.... ..+...+ .++..+...++.++|+..+.++.+..... +..++..+..+|.+.|++++|...|+++......
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 247 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH- 247 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-
Confidence 7653 2333344 36777778888899999988876542211 1467888889999999999999999999886432
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHH
Q 004006 575 TSRTFMPIIHGFARAGEMKRALEIF 599 (779)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~a~~~~ 599 (779)
.+.....++...|++++|++.+
T Consensus 248 ---~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 ---NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---TCHHHHHHHHHHHHHHHC----
T ss_pred ---hHHHHHHHHHHHHHHHhhHHHH
Confidence 2344455777888888888776
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-15 Score=153.38 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=79.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.| +.+|+++|||||+|.+.++|.+||..| ||..|+|+.|+|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~i~gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS-KRSGKPRGYAFIEYEHERDMHSAYKHA--DGKKIDGRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc-CCCCCccceEEEeeccHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcch
Q 004006 230 LDDGRRL 236 (779)
Q Consensus 230 ~~~~~~~ 236 (779)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=134.49 Aligned_cols=201 Identities=14% Similarity=0.053 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
....|..+...+...|++++|+.+|+++.+.. ..+...+..+..+|...|++++|++.|+++++... .+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 45567778888889999999999999998764 33677888888889999999999999998887643 36788888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
.|...|++++|+..|+++.+.... +..++..++.+|.+.|++++|+++++++.+.. +.+..++..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 888899999999999888877543 67778888888888888888888888887764 4456677777777777788888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
|+..|+++.+... .+..++..+..+|.+.|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8877777766532 24566777777777777777777777777664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-13 Score=126.88 Aligned_cols=203 Identities=10% Similarity=-0.009 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..++..|...|++++|+.+|+++.+.. ..+...+..+..+|...|++++|.+.|+++++.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34567777888888888888888888887764 2356778888888888888888888888887764 236777788888
Q ss_pred HHHcc-CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 375 GFAKM-GNAEAADHWFEEAKERHATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 375 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
.|... |++++|+..|+++.+....+ +...+..++.+|...|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887721111 35667777777777888888888877777653 33466666777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
++|...|+++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777665432124555666666666777777777776666543
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-15 Score=134.63 Aligned_cols=82 Identities=20% Similarity=0.414 Sum_probs=78.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+|||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD-YKTGYSYGYAFVDFTSEMDSQRAIKVL--NGITVRNKRLKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEe-CCCCccceEEEEEECCHHHHHHHHHhc--CCCEeCCcEEEEEe
Confidence 469999999999999999999999999999999998 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.+..
T Consensus 80 ~~~~~ 84 (168)
T 1b7f_A 80 ARPGG 84 (168)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 87654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-12 Score=125.71 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILG 620 (779)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 620 (779)
...+..+...+...|++++|...|+++...... +...+..+...|...|++++|..+++++.+.... +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 345555666666666666666666666655433 4455666666666777777777777776665432 56667777777
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 004006 621 LVEK-RQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (779)
Q Consensus 621 ~~~~-~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (779)
|... |++++|+.+++++.+.+..++ ...+..+..+|...|++++|+.+++++.+.. +.+...+..++.+|...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777776222233 4567777777778888888888888877764 345777777888888888888
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 699 SALAVTKEMSAQKIP-RNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 699 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
+|..+++++.+.. + .+...+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888877654 4 56667777777778888888888888887653
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-14 Score=140.42 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=70.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~v 228 (779)
.+++|||+||+..+++++|+++|++||.|.+|+++.+ + +|||||+|.+.++|.+|++.| ||..++ |+.|+|
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-~-----~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~v 277 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG-R-----HDIAFVEFDNEVQAGAARDAL--QGFKITQNNAMKI 277 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC-C-----CcEEEEEeCCHHHHHHHHHHc--CCcEeCCCCEEEE
Confidence 3469999999999999999999999999999999976 2 599999999999999999999 999999 999999
Q ss_pred EecC
Q 004006 229 KLDD 232 (779)
Q Consensus 229 ~~~~ 232 (779)
+|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9985
|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=117.01 Aligned_cols=71 Identities=30% Similarity=0.606 Sum_probs=66.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc----C-------CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF----G-------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
+.++|||||||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .+ ||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~a~~A~-~l--~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AF--DG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSEEEEEESSHHHHHHHG-GG--TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcEEEEEcCCHHHHHHHH-hc--CC
Confidence 44699999999999999999999999 8 8999999876 899999999999999999 88 99
Q ss_pred ceeeceEEEEEe
Q 004006 219 VEFHGRVLTVKL 230 (779)
Q Consensus 219 ~~~~~~~~~v~~ 230 (779)
..++|+.|+|+.
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999973
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-13 Score=132.28 Aligned_cols=128 Identities=14% Similarity=0.123 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004006 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693 (779)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 693 (779)
+..+...|...|++++|+.+++++.+.. ..+...+..+...|...|++++|+.+++++.+.. +.+...+..++.+|..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3333333333344444444443333322 1223333334444444444444444444444332 2233344444444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 694 SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.|++++|..+++++.+.. +.+...+..++.+|.+.|++++|.++++++.+
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444444444444444332 23334444444444444444444444444444
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.9e-15 Score=133.06 Aligned_cols=82 Identities=20% Similarity=0.450 Sum_probs=78.0
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|++|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTL--NGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHc--CCCccCCceEEEEe
Confidence 369999999999999999999999999999999998 889999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
+.+..
T Consensus 79 ~~~~~ 83 (167)
T 1fxl_A 79 ARPSS 83 (167)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 87664
|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-15 Score=123.40 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=66.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE----
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV---- 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~---- 225 (779)
..++|||+|||+++|+++|+++|++||.|.+|+|+.| |||||+|.+.++|.+|++.| ||..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHH--TTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--------CEEEEEECCHHHHHHHHHHh--CCCEECCcEeeeE
Confidence 3469999999999999999999999999999999864 99999999999999999999 999999998
Q ss_pred -EEEEecCCc
Q 004006 226 -LTVKLDDGR 234 (779)
Q Consensus 226 -~~v~~~~~~ 234 (779)
|+|..+.++
T Consensus 85 ~i~v~~~~~~ 94 (115)
T 3beg_B 85 YIRVKVDGPR 94 (115)
T ss_dssp BCEEEECC--
T ss_pred EEEeccCCCC
Confidence 777776554
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.9e-15 Score=132.88 Aligned_cols=79 Identities=20% Similarity=0.393 Sum_probs=76.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+|||..+++++|+++|++||.|.+++++.| +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|.+
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRINW 163 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh--CCCccCCcEEEEEe
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
|+
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-15 Score=138.57 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=75.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+||++.+|+++|+++|++||.|.+|+|++| + +.++|||||+|.+.++|.+|++.| ||..|+|++|+|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d-~--~~~~g~~fV~f~~~~~a~~Ai~~l--ng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T--TEEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc-C--CCCceEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4468999999999999999999999999999999987 3 457999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 177 ~a~~~~ 182 (213)
T 4f02_A 177 RFKSRK 182 (213)
T ss_dssp ECCCHH
T ss_pred EcCCCc
Confidence 998764
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-15 Score=134.49 Aligned_cols=81 Identities=31% Similarity=0.547 Sum_probs=76.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||..+++++|+++|++||.|.+++++.| +.+|+++|||||+|.+.++|.+|++ + ||..++|++|+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-N--KFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-C--SEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-C--CCEEeCCeEEEEe
Confidence 4569999999999999999999999999999999999 8899999999999999999999997 7 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
++.++
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99876
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=133.16 Aligned_cols=79 Identities=27% Similarity=0.543 Sum_probs=75.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||.++|+++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQR 170 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCSEEEEEEEEESSTTHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHc--CCCEECCeEEEEEe
Confidence 459999999999999999999999999999999998 789999999999999999999999999 99999999999998
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=146.44 Aligned_cols=276 Identities=13% Similarity=0.076 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCCCHhH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKEE----G-IEMSLVT 368 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~ 368 (779)
.+..+...+...|++++|+.+|+++.+.+.. +. .+|..+..+|...|++++|+..|++.++. + ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4556778889999999999999999987432 33 46888889999999999999999988653 1 1224567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRN-----------------MERAEALVRD 426 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 426 (779)
+..+...|...|++++|+..|+++.+.. ......++..++.+|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8888889999999999999998876641 11134467777777777887 6777666666
Q ss_pred HHHcC----C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 427 MEEEG----I-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 427 ~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
..+.. . .....++..+...|...|++++|+..|++..+.... .+..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 54321 0 011224444555555555555555555554432100 0000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--
Q 004006 501 GIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR-- 573 (779)
Q Consensus 501 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 573 (779)
.....+..+...|...|++++|...|++..+.... ....++..+..+|...|++++|...|++.......
T Consensus 261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 00113344444444445555554444444332100 01234445555555555555555555554432110
Q ss_pred ---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 574 ---PTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (779)
Q Consensus 574 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 605 (779)
....++..+...|.+.|++++|...|++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01234555666666667777777766666654
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=133.86 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=71.7
Q ss_pred ccceEEeccCC-CcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++||||||+ +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.| ||..+.|++|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS------KPGAAMVEMADGYAVDRAITHL--NNNFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT------STTCEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC------CCCEEEEEECCHHHHHHHHHHh--CCCEECCceEEE
Confidence 45699999999 89999999999999999999999876 2799999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.+++..
T Consensus 75 ~~s~~~ 80 (205)
T 3tyt_A 75 CVSKQP 80 (205)
T ss_dssp EECSCS
T ss_pred EEccCC
Confidence 998654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-13 Score=142.96 Aligned_cols=203 Identities=18% Similarity=0.103 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CC
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GIE-MS 365 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~ 365 (779)
....+..+...+...|++++|+..|+++.+.+.. + ..++..+...|...|++++|...|++.++. +.. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4556677888899999999999999999887432 3 356788888899999999999999887543 111 12
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------hHHH
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRN--------------------MERA 420 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A 420 (779)
..++..+...|...|++++|+..|+++.+.... .+ ..++..++.+|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 557788888888999999999988887664211 01 3367777777777777 7777
Q ss_pred HHHHHHHHHcC--C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHHcCCHHHH
Q 004006 421 EALVRDMEEEG--I---DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PS----IISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 421 ~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A 490 (779)
++.+++..+.. . .....++..+...|...|++++|+..|++..+.... .+ ..++..+..+|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 77766654421 0 001234455555556666666666655555432000 01 12444455555555555555
Q ss_pred HHHHHHHH
Q 004006 491 LEVSKVMK 498 (779)
Q Consensus 491 ~~~~~~m~ 498 (779)
...+++..
T Consensus 247 ~~~~~~al 254 (406)
T 3sf4_A 247 SEYYKKTL 254 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=132.93 Aligned_cols=83 Identities=25% Similarity=0.498 Sum_probs=79.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||..+++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|.
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQ 189 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC-TTTCSEEEEEEEEESSSSHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++++.
T Consensus 190 ~a~~~~ 195 (198)
T 2yh0_A 190 RASVGA 195 (198)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998774
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=137.11 Aligned_cols=85 Identities=21% Similarity=0.385 Sum_probs=80.2
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
....++|||+|||..+|+++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l--~g~~~~g~~i~ 198 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAVSSM--NLFDLGGQYLR 198 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBCSSSBCE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHHc--cCCEeCCcEEE
Confidence 345679999999999999999999999999999999999 889999999999999999999999999 99999999999
Q ss_pred EEecCCcc
Q 004006 228 VKLDDGRR 235 (779)
Q Consensus 228 v~~~~~~~ 235 (779)
|.++.++.
T Consensus 199 V~~a~~~~ 206 (216)
T 2qfj_A 199 VGKAVTPP 206 (216)
T ss_dssp EEECSSCS
T ss_pred EEEecCCC
Confidence 99998764
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=134.59 Aligned_cols=83 Identities=28% Similarity=0.471 Sum_probs=75.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||||||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++. +|..++|+.|.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~---~~~~~~g~~l~v 86 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEP 86 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHT---CSCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc-CCCCCccceEEEEeCCHHHHHHHHhc---CCCEECCEEeee
Confidence 34569999999999999999999999999999999999 88999999999999999999999964 899999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++..+.
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-12 Score=128.45 Aligned_cols=218 Identities=13% Similarity=0.130 Sum_probs=159.5
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-CCCC
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYA-------RRGDM-------HRARQTFENMRA-RGIE 328 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~ 328 (779)
+.|...|++++..+|. +...|..++..+. +.|++ ++|+.+|++.++ .. .
T Consensus 33 ~~a~~~~~~al~~~p~---------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-K 96 (308)
T ss_dssp HHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-T
T ss_pred HHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-c
Confidence 6788999999998887 6666777777665 45876 899999999987 33 2
Q ss_pred CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
-+...|..++..+.+.|++++|.++|++.++.... +.. +|..++..+.+.|++++|+.+|+++.+.... +...|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~ 174 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTA 174 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 25668888999999999999999999999885321 333 7888888888899999999999998876543 44555544
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHH
Q 004006 408 IYAQC-QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG-FSP--SIISYGCLINLYTK 483 (779)
Q Consensus 408 ~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~ 483 (779)
+.... ..|+.++|.++|++..+.. +.+...|..++..+.+.|++++|+.+|++..... +.| ....|..++..+.+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 43322 3688888888888777753 3456677777777777777777777777777752 233 34566677777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004006 484 IGKVSKALEVSKVMKSS 500 (779)
Q Consensus 484 ~g~~~~A~~~~~~m~~~ 500 (779)
.|+.+.|..+++++.+.
T Consensus 254 ~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 254 IGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777776654
|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=115.50 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=65.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc--eeeceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV--EFHGRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~--~~~~~~~~ 227 (779)
+.++|||||||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|+++ ++. .++|+.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~------~~~~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSL------CGEDLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS------CCSCCEEECSCHHHHHHT------TTCEEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC------CCCEEEEEECCHHHHHHH------hcCCceeCCEEEE
Confidence 3469999999999999999999999999999999864 589999999999999753 444 45899999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.+++++..
T Consensus 72 v~~a~~~~~ 80 (88)
T 1wf0_A 72 ISNAEPKHN 80 (88)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999987753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-13 Score=141.47 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGI-SPN----EHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GL-ELDV 681 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~ 681 (779)
.++..+...|...|++++|..++++..+... ..+ ..++..+...|...|++++|..++++.++. +. ....
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 3445555556666666666666655443210 011 345556666666666666666666665543 10 1123
Q ss_pred HHHHHHHHHHHHcCCh
Q 004006 682 FTYEALLKACCKSGRM 697 (779)
Q Consensus 682 ~~~~~l~~~~~~~g~~ 697 (779)
.++..+...+...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 4556666666666654
|
| >3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=133.40 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=71.0
Q ss_pred cccceEEeccCCCcC---------ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc
Q 004006 149 RQEGKIFVGNLPNWI---------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~ 219 (779)
...++||||||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|+.|+++| ||.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-------kG~AFV~F~~~~~Ae~A~~am--~g~ 202 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-------KNCGFVKFKYQANAEFAKEAM--SNQ 202 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHHH--TTC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-------CCEEEEEeCCHHHHHHHHHHh--CCC
Confidence 345699999999998 79999999999999999999976 899999999999999999999 999
Q ss_pred ee------------eceEEEEEecCCc
Q 004006 220 EF------------HGRVLTVKLDDGR 234 (779)
Q Consensus 220 ~~------------~~~~~~v~~~~~~ 234 (779)
.| +|+.|.|.||+..
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EEeccccccccccCCCCEEEEEEccCC
Confidence 99 9999999999765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-13 Score=142.45 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=58.0
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCh
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA----IIYGNIIYAQCQTRNMERAEALVRDMEEEG-----IDAPI 436 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~ 436 (779)
...+..+...+...|++++|+..|+++.+.... +. .++..++.+|...|++++|++.|++..+.. .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 444556666777777777777777777776433 32 356667777777777777777777665431 01122
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 437 DIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
.++..+...|...|++++|+..|++..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555555555555555555544
|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=131.00 Aligned_cols=80 Identities=15% Similarity=0.286 Sum_probs=72.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+++|+++|+++|++||.|.+|+|.++ . +|+++|||||+|++.++|.+|+..+ +..++|+.|+|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~-~~~~kG~aFVeF~~~e~A~~A~~~~---~~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-L-HKAFKGSIFVVFDSIESAKKFVETP---GQKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC-T-TCCEEEEEEEEESSHHHHHHHHHCT---TCEETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC-C-CCCcccEEEEEECCHHHHHHHHHhC---CCeECCEEEEEE
Confidence 4569999999999999999999999999999999997 4 4999999999999999999999765 569999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++.-
T Consensus 183 ~~~~y 187 (193)
T 2voo_A 183 FKDDY 187 (193)
T ss_dssp ETTTC
T ss_pred EhHHH
Confidence 87654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-13 Score=136.94 Aligned_cols=277 Identities=15% Similarity=0.101 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHh
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GIE-MSLV 367 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~ 367 (779)
..+......+...|++++|+.+|+++.+.... + ...+..+...|...|++++|++.+++.++. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556778888999999999999999887432 3 357888889999999999999999887643 111 1356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------hHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRN--------------------MERAEA 422 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 422 (779)
++..+...|...|++++|+..|+++.+.... .+ ..++..++.+|...|+ +++|++
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7788888899999999999998887664211 11 3367777778888888 777777
Q ss_pred HHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 423 LVRDMEEE----GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG----FS-PSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 423 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~-~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
.+++.... +. .....++..+...|...|++++|+..+++..+.. .. ....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665432 10 0112345555556666666666666665554320 00 001244445555555555555555
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004006 493 VSKVMKSSGIK-HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 493 ~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 571 (779)
.+++..+.... .+.. ....++..+...+...|++++|...++++....
T Consensus 245 ~~~~al~~~~~~~~~~-------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRA-------------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchh-------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 55544321000 0000 002334444455555555555555555443321
Q ss_pred CC-----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 572 HR-----PTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (779)
Q Consensus 572 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 605 (779)
.. ....++..+...|.+.|++++|...++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 01224445555666666666666666666553
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-14 Score=135.50 Aligned_cols=86 Identities=24% Similarity=0.411 Sum_probs=76.9
Q ss_pred hccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 147 ~~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.....++|||+|||.++|+++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~l 100 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD-SVTMKHKGFAFVEYEVPEAAQLALEQM--NSVMLGGRNI 100 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHH--SSCCCC-CCC
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeec-CCCCccCceEEEEeCCHHHHHHHHHHc--cCCeeCCeeE
Confidence 3345579999999999999999999999999999999998 889999999999999999999999999 9999999999
Q ss_pred EEEecCCcc
Q 004006 227 TVKLDDGRR 235 (779)
Q Consensus 227 ~v~~~~~~~ 235 (779)
+|.++....
T Consensus 101 ~v~~~~~~~ 109 (216)
T 2qfj_A 101 KVGRPSNIG 109 (216)
T ss_dssp EEECCSCCG
T ss_pred EEecCCCcc
Confidence 999886654
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=129.32 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=75.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||||||+++|+++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD-PATGRSRGFGFLSFEKPSSVDEVVK----TQHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCC-TTTSSCCSCEEEEESSTHHHHHHHH----SCCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEC-CCCCCccceEEEEEccHHHHHHHHh----cccccCCeEcccc
Confidence 4569999999999999999999999999999999999 8899999999999999999999997 4779999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.++.
T Consensus 77 ~~~~~~ 82 (167)
T 2cjk_A 77 RAIPRD 82 (167)
T ss_dssp ECCCHH
T ss_pred cccchh
Confidence 987653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-13 Score=142.25 Aligned_cols=194 Identities=10% Similarity=-0.032 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDM-HRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
+...|..+...|...|++ ++|+..|+++++... .+...|..+..+|...|++++|++.|++.++.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 555666667777777777 777777777766532 245667777777777777777777777776643 4556666777
Q ss_pred HHHHcc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCC---
Q 004006 374 GGFAKM---------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT--------RNMERAEALVRDMEEEGID--- 433 (779)
Q Consensus 374 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--- 433 (779)
.+|... |++++|+..|+++.+.... +...|..++.+|... |++++|++.|++..+.+ +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 777776 7777777777777666443 566666677776666 66777777776666653 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004006 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVS 494 (779)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (779)
.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|++.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666666666666654322 4445566666666666666666544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-12 Score=116.37 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..|...|.+.|++++|+..|++.++.+.. +..++..+..+|.+.|++++|+..++....... -+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 4566777788888888888888888887776432 666777777778888888888888877776543 35667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
.+...++++.|...+.++...... +..++..++.+|.+.|++++|++.|++..+.+ +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 777777888888777777776444 66677777777777777777777777777664 4456666777777777777777
Q ss_pred HHHHHHHHHHC
Q 004006 455 CLIVFERLKEC 465 (779)
Q Consensus 455 a~~~~~~~~~~ 465 (779)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777776654
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-14 Score=131.65 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=74.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.|..|+++.| +.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|.|.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~---~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVIQ---KYHTVNGHNCEVRK 179 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHC---SCCEETTEECEEEE
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec-CCCCCccceEEEEECCHHHHHHHHHh---CCcEECCEEEEEEe
Confidence 369999999999999999999999999999999999 88999999999999999999999964 79999999999999
Q ss_pred cCCcchh
Q 004006 231 DDGRRLK 237 (779)
Q Consensus 231 ~~~~~~~ 237 (779)
+.++...
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9877543
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-14 Score=127.85 Aligned_cols=78 Identities=24% Similarity=0.448 Sum_probs=74.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec--eEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v 228 (779)
.++|||+|||..+++++|+++|++||.|..+++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++| ++|+|
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD-KLTGRPRGVAFVRYNKREEAQEAISAL--NNVIPEGGSQPLSV 165 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCEE
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--cCCEecCCCeEEEE
Confidence 459999999999999999999999999999999998 778999999999999999999999999 9999987 99999
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=127.33 Aligned_cols=80 Identities=23% Similarity=0.479 Sum_probs=74.1
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||+|||.++|+++|+++|++||.|.+++++.+ + +|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~-~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-K-NNKNVNYAFVEYHQSHDANIALQTL--NGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECC-C-C-CCEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCCCCEEEEEeCCHHHHHHHHHHc--CCCccCCCeeEEEEc
Confidence 38999999999999999999999999999999998 4 4889999999999999999999999 999999999999998
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
.+..
T Consensus 77 ~~~~ 80 (166)
T 3md3_A 77 FQSQ 80 (166)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
|
| >1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-14 Score=115.86 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=64.7
Q ss_pred eccCCCcCChHHHHHHH------------hccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 156 VGNLPNWIKKHLVMEFF------------RQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 156 v~~l~~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
++||++.+++++|++.| ++||.|.+|+|+++ + +|+++|||||+|.+.++|.+|+..| ||..++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~-~-~~~~~G~~fV~f~~~~~A~~A~~~l--ng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN-L-GDHLVGNVYVKFRREEDAEKAVIDL--NNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS-S-SSSSEEEEEEEESCHHHHHHHHHHH--TTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC-C-CCCccEEEEEEECCHHHHHHHHHHH--CCCEECC
Confidence 56788888888777666 99999999999987 4 4899999999999999999999999 9999999
Q ss_pred eEEEEEec
Q 004006 224 RVLTVKLD 231 (779)
Q Consensus 224 ~~~~v~~~ 231 (779)
|+|+|+++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99999986
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=134.67 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAG----I-SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 675 (779)
.++..+...|...|++++|..++++..+.. . .....++..+...|...|++++|..+++++.+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345555566666666666666666554321 0 011335566667777777777777777777654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-11 Score=122.76 Aligned_cols=217 Identities=9% Similarity=0.032 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-------cCCh-------HHHHHHHHHHHH-cCCCCCHhHHHHHHHHHH
Q 004006 313 HRARQTFENMRARGIEPTLHVYTNLIHAYAV-------GRDM-------EEALSCVRKMKE-EGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~-~g~~~~~~~~~~l~~~~~ 377 (779)
++|+.+|+++++.. ..+...|..++..+.. .|++ ++|..+|++.++ .. +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56777777777653 2356667666666543 3554 666666666665 22 224456666666666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT-IIGNEEKC 455 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 455 (779)
+.|++++|+.+|+++.+..+. +.. +|..++..+.+.|++++|..+|++..+.+ +.+...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666654322 222 56666666666666666666666665543 222333332222211 23555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG-IKH--NMKTYSMLINGFLKLKDWANVFAVFEDV 532 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (779)
..+|++.++... -+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555444311 134444444444545555555555555544431 122 2334444444444444444444444444
Q ss_pred HH
Q 004006 533 MR 534 (779)
Q Consensus 533 ~~ 534 (779)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9e-14 Score=126.32 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=73.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE--EE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV--LT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~--~~ 227 (779)
..++|||+|||..+++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+. |+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPIT 163 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHh--cCCccCCCccceE
Confidence 3458999999999999999999999999999999998 788999999999999999999999999 999999975 88
Q ss_pred EEec
Q 004006 228 VKLD 231 (779)
Q Consensus 228 v~~~ 231 (779)
|+||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8775
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-11 Score=114.78 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=118.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMH 654 (779)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 654 (779)
+...|..+...|.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|+..+....... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3445666667777777777777777777766543 56667777777777777777777777766553 345566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004006 655 GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWE 734 (779)
Q Consensus 655 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 734 (779)
.+...++++.+...+.++.... +.+...+..+..+|...|++++|+..++++.+.+ +.+...|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777664 4466777777777778888888888887777665 5567777777888888888888
Q ss_pred HHHHHHHHHH
Q 004006 735 AADLMQQMKQ 744 (779)
Q Consensus 735 A~~~~~~m~~ 744 (779)
|++.|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887776
|
| >3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=111.03 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=69.6
Q ss_pred cceEEeccC--CCcCC--------hHHHHHHHhccCCeeEEEEecCCCCC--CCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 151 EGKIFVGNL--PNWIK--------KHLVMEFFRQFGPIKNVILIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 151 ~~~~~v~~l--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
++.|.+.|+ +.+.. +++|++.|++||.|.+|+|+++ +.+ ++++|||||+|.+.++|.+|++.| ||
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~-~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l--nG 81 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGL--TG 81 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCC-BTTBCCTTTTEEEEEESSHHHHHHHHHHH--TT
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEecc-CCCCCcCCcEEEEEEECCHHHHHHHHHHh--CC
Confidence 458888888 33433 3689999999999999999988 544 478999999999999999999999 99
Q ss_pred ceeeceEEEEEecCCc
Q 004006 219 VEFHGRVLTVKLDDGR 234 (779)
Q Consensus 219 ~~~~~~~~~v~~~~~~ 234 (779)
..++||.|+|.+....
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999997554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=137.50 Aligned_cols=216 Identities=9% Similarity=-0.009 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 004006 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNM-DRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIF 599 (779)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 599 (779)
.+++++..++....... .+...+..+..++...|++ ++|++.|+++.+.... +...|..+..+|.+.|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46777777777665433 3677888888888888888 8888888888887655 5677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 004006 600 DMMRRSGCIPTVHTFNALILGLVEK---------RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL--------GDT 662 (779)
Q Consensus 600 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~ 662 (779)
+++.+.. |+...+..+...|... |++++|+..|++.++.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8888764 5567778888888888 88888888888887764 44577788888888887 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 663 GKAFEYFTKLRNEGLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (779)
Q Consensus 663 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (779)
++|+..|+++++.... .+...|..+..+|...|++++|...|+++.+.+ +.+...+..+..++...|++++|++.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888876421 477788888888888888888888888887765 5566778888888888888888887665
Q ss_pred HH
Q 004006 741 QM 742 (779)
Q Consensus 741 ~m 742 (779)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=125.38 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=71.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||..+|+++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~ 169 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSLY 169 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE------CSSSSCCSEEEEECSSHHHHHHHHHHH--TEEEETTEEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe------cCCCCCceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 45699999999999999999999999988765 356899999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99876
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=125.56 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=72.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee---ceEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVL 226 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~---~~~~ 226 (779)
..++|||+|||..+|+++|+++|++||.|.+++++++ + +|+++|||||+|.+.++|.+|++.| ||..+. |++|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~~~l 169 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-P-DGLSRGCAFVTFTTRAMAQTAIKAM--HQAQTMEGCSSPM 169 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTSCCCTTCSSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-C-CCCEEEEEEEEECCHHHHHHHHHHh--cCCcccCCCCCCe
Confidence 4569999999999999999999999999999999998 4 5999999999999999999999999 998876 4999
Q ss_pred EEEec
Q 004006 227 TVKLD 231 (779)
Q Consensus 227 ~v~~~ 231 (779)
+|.||
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=126.58 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=75.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCC--CCcceEEEEeCCHHHHHHHHHHhhhCCceee---ce
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GR 224 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~---~~ 224 (779)
+.++|||+|||+++|+++|+++|++||.|.+++++++ +.+| +++|||||+|.+.++|.+|++.+ ||..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRD-RSQNPPQSKGCCFVTFYTRKAALEAQNAL--HNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-CSSSSCEEEEEEEEEESSHHHHHHHHHHH--TTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec-CCCCCCCcceEEEEEECCHHHHHHHHHHh--cCcEEccCCcc
Confidence 3469999999999999999999999999999999998 7776 89999999999999999999999 998876 78
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.+.+.++....
T Consensus 79 ~~~~~~~~~~~ 89 (175)
T 3nmr_A 79 PIQMKPADSEK 89 (175)
T ss_dssp CCEEEECGGGC
T ss_pred ceEEccccccc
Confidence 88888876553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-12 Score=130.59 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=148.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------CcccHH
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRD----GLKP-DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP------TSRTFM 580 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 580 (779)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|+..+++........ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556667777777777776553 1011 23456667777777777777777777665432111 123556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGCI-PT----VHTFNALILGLVEKRQMEKAIEILDEMTLA----GI-SPNEHTYT 650 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~~~~~~~~ 650 (779)
.+...|...|++++|+..|++..+.... .+ ..++..+...|...|++++|+..|++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6667777778888888777776643110 11 236777788888888888888888877651 22 23356677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNE----GLELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILI 723 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (779)
.+...|...|++++|..++++.++. +-......+..+...|...|+ +++|..++++... .+.....+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 8888888888888888888887654 111122335667777777887 6677777766521 122234667788
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004006 724 DGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|...|++++|.+++++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888765
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=135.42 Aligned_cols=81 Identities=25% Similarity=0.469 Sum_probs=74.3
Q ss_pred cccceEEeccCCCcCChHHHH----HHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 149 RQEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
.+.++|||+|||+++|+++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.+ ||..+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~ 80 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDK 80 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHh--cCCeeCCc
Confidence 445799999999999999976 8999999999999875 5889999999999999999999999 99999999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.|+|.+++.+.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999986654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=129.75 Aligned_cols=228 Identities=11% Similarity=0.038 Sum_probs=119.0
Q ss_pred HHHcCChHHHHHHHHHHHHC--CCCCC--HhhHHHHHHHH--HccCChHHHH-----------HHHHHHHHcCCCCC---
Q 004006 306 YARRGDMHRARQTFENMRAR--GIEPT--LHVYTNLIHAY--AVGRDMEEAL-----------SCVRKMKEEGIEMS--- 365 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~~~--- 365 (779)
+.+.+++++|..+++++.+. .+..| ...|..++..- .-.++++.+. ++++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45788999999999998664 22223 33334443321 1223333343 55555543210001
Q ss_pred -HhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----
Q 004006 366 -LVTYSIIVGGFAKMGNAEAADHWFEEAKERH----AT-LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-A---- 434 (779)
Q Consensus 366 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~---- 434 (779)
...+...+..+...|++++|+..|+++.+.- .. ....++..++.+|...|++++|++.+.+..+.... .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1122235666777888888888888876531 11 12356777777777777777777777766653100 0
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C
Q 004006 435 -PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PS----IISYGCLINLYTKIGKVSKALEVSKVMKSS----GI-K 503 (779)
Q Consensus 435 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~ 503 (779)
...+++.+...|...|++++|+..|++..+.... .+ ..++..+..+|...|++++|++.+++..+. +. .
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1234555556666666666666666655432100 01 124455555555555555555555555441 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 504 HNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 504 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
....++..+...|.+.|++++|...+++..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 123344445555555555555555554443
|
| >2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=110.97 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=68.0
Q ss_pred ccceEEeccCCCcCC-----------hHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 150 QEGKIFVGNLPNWIK-----------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
.+++|+|.||..... +++|+++|++||.|.+|.| .| + .++|||||+|.+.++|.+|+..| ||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~-~---~~~G~afV~f~~~~~A~~Ai~~l--ng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD-R---HPDGVASVSFRDPEEADYCIQTL--DG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET-T---CTTCEEEEECSCHHHHHHHHHHS--TT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec-C---CCCEEEEEEECCHHHHHHHHHHc--CC
Confidence 345999999944332 5799999999999999966 55 2 36999999999999999999999 99
Q ss_pred ceeeceEEEEEecCCcc
Q 004006 219 VEFHGRVLTVKLDDGRR 235 (779)
Q Consensus 219 ~~~~~~~~~v~~~~~~~ 235 (779)
..++||+|+|.++.++.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999997764
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-13 Score=132.94 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=79.6
Q ss_pred cccceEEeccCCCcC-ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 149 RQEGKIFVGNLPNWI-KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
...++|||+|||..+ ++++|+++|++||.|.+++|..| . +|+++|||||+|.+.++|.+|+..| ||..++|+.|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 257 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG-Q-DGQLKGFAVLEYETAEMAEEAQQQA--DGLSLGGSHLR 257 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC-S-SCCEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC-C-CCCcccEEEEEeCCHHHHHHHHHHh--CCCccCCeEEE
Confidence 345699999999995 99999999999999999999997 4 7999999999999999999999999 99999999999
Q ss_pred EEecCCcchhhH
Q 004006 228 VKLDDGRRLKNK 239 (779)
Q Consensus 228 v~~~~~~~~~~~ 239 (779)
|.++.++..+++
T Consensus 258 v~~a~~~~~~~~ 269 (284)
T 3smz_A 258 VSFCAPGPPGRS 269 (284)
T ss_dssp EEECCSSSCHHH
T ss_pred EEEecCCCcccc
Confidence 999988865543
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-13 Score=134.87 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=75.1
Q ss_pred cccceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCC-CCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 149 RQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNN-FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 149 ~~~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
...++|||+|||+. +|+++|+++|++||.|..|+|+.+ .. ||+++|||||+|.+.++|.+|+ .| ||..|+|+.|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~tg~~~g~afV~F~~~~~A~~A~-~l--~g~~~~g~~i 283 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG-QKEHSFNNCCAFMVFENKDSAERAL-QM--NRSLLGNREI 283 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC-CC---CCCEEEEEEESSHHHHHHHG-GG--TTEEETTEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec-CCcCCCCceEEEEEeCCHHHHHHHH-Hh--cCCEECCcEE
Confidence 34569999999999 999999999999999999999998 54 6999999999999999999999 99 9999999999
Q ss_pred EEEecCCc
Q 004006 227 TVKLDDGR 234 (779)
Q Consensus 227 ~v~~~~~~ 234 (779)
+|.+++++
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999875
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=130.53 Aligned_cols=78 Identities=26% Similarity=0.515 Sum_probs=72.5
Q ss_pred ccccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
..+.++|||||||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+..+ ||..++|+.|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~ 89 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-------RGFGFIRLESRTLAEIAKAEL--DGTILKSRPLR 89 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CcEEEEEECCHHHHHHHHHHc--CCcEECCceeE
Confidence 345569999999999999999999999999999999776 899999999999999999999 99999999999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|.++.+.
T Consensus 90 v~~a~~~ 96 (261)
T 3sde_A 90 IRFATHG 96 (261)
T ss_dssp EEECCCS
T ss_pred eeecccC
Confidence 9998764
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=127.78 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=72.0
Q ss_pred ccceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++|||+|||+ .+++++|+++|++||.|.+|+|+++ + +|||||+|.+.++|.+|++.+ ||..+.|+.|+|
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~-~-----~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~v 104 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIRI 104 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT-T-----SCCEEEEESCHHHHHHHHHHH--TTCBCSSSBCEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC-C-----CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEE
Confidence 446999999999 9999999999999999999999987 3 799999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.+++..
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 998755
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=132.48 Aligned_cols=170 Identities=13% Similarity=0.045 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc------C
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR-------GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE------G 361 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 361 (779)
....+..+...|...|++++|+.+|+++.+. .......++..+..+|...|++++|+..|++.++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456788999999999999999999999873 22334567888999999999999999999998764 2
Q ss_pred C-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC------C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 004006 362 I-EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH------A-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE--- 430 (779)
Q Consensus 362 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 430 (779)
- .....++..++..|...|++++|+..|+++.+.. . .....++..++.+|...|++++|+++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 2246678889999999999999999999887641 1 224456778888888888888888888888764
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 431 ---GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 431 ---~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
+. .....++..+...|...|++++|+..|+++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 12234567777778888888888888877764
|
| >3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-13 Score=110.14 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=71.0
Q ss_pred ccceEEeccCCC--cC---ChHHHHHHHhccCCeeEEEEecCCCC----CCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 150 QEGKIFVGNLPN--WI---KKHLVMEFFRQFGPIKNVILIKGYNN----FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 150 ~~~~~~v~~l~~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
+++.|++.|+-. ++ -+++|++.|++||.|.+|+|+++ +. +++++||+||+|.+.++|.+|++.| ||..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~-~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L--nGr~ 95 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQE-KQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRW 95 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEE-EESSSTTCEEEEEEEEEESSHHHHHHHHHHH--TTCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeec-CCCcccCCcceEEEEEEECCHHHHHHHHHHH--CCCE
Confidence 566999999832 22 35799999999999999999998 43 5678999999999999999999999 9999
Q ss_pred eeceEEEEEecCCc
Q 004006 221 FHGRVLTVKLDDGR 234 (779)
Q Consensus 221 ~~~~~~~v~~~~~~ 234 (779)
++||.|+|.++...
T Consensus 96 f~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 96 FAGRKVVAEVYDQE 109 (118)
T ss_dssp ETTEECEEEEECHH
T ss_pred ECCcEEEEEEcChH
Confidence 99999999997543
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-13 Score=126.70 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=72.9
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||||||+++|+++|+++|++||.+.. .++.+ ..+|+++|||||+|.+.++|.+|+ .+ ||..+.|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~v 85 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKAL-EL--TGLKVFGNEIKL 85 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHH-HG--GGEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEE-CCCCccccEEEEEECCHHHHHHHH-hc--CCCEeCCeEEEE
Confidence 34569999999999999999999999998877 44555 678999999999999999999999 48 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++.++.
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9987653
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=99.39 E-value=8.3e-13 Score=131.35 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=78.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+.+|+++|+++|++||.|.+++++.| +.+|+++|||||+|.+.++|.+|+..+ ||..++|+.|+|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDL--LGKPLGPRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.++.
T Consensus 171 ~a~~~~ 176 (284)
T 3smz_A 171 WTDAGQ 176 (284)
T ss_dssp ECCGGG
T ss_pred ECCCCC
Confidence 987664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=132.29 Aligned_cols=170 Identities=17% Similarity=0.115 Sum_probs=131.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------H 396 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 396 (779)
+..++..+...|...|++++|+.+|+++++. .......++..+...|...|++++|+..|+++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467888999999999999999999999873 22335678889999999999999999999998765 1
Q ss_pred -CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 004006 397 -ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE------GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--- 465 (779)
Q Consensus 397 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 465 (779)
......++..++.+|...|++++|++.|+++.+. +. .....++..+...|...|++++|+.+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1224567888899999999999999999888764 21 223456777788888888888888888887664
Q ss_pred ---CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 466 ---GFSP-SIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 466 ---g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
+..+ ...++..+..+|...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 244677778888888888888888887765
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.9e-13 Score=123.15 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=68.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCe--eEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece---
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPI--KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR--- 224 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~--- 224 (779)
++.+|||+|||+.+|+++|+++|++||.| .+++++.+ + |+.+|||||+|.+.++|.+|+..| ||..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~-~--~~~~g~gfV~f~~~~~A~~Ai~~l--ng~~~~g~~~~ 196 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG-K--SERSSSGLLEWDSKSDALETLGFL--NHYQMKNPNGP 196 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC-C--SSSSEEEEEECSSHHHHHHHHHHH--TTCEECCSSSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC-C--CCCceEEEEEeCCHHHHHHHHHHh--CCCCccCCCCC
Confidence 34589999999999999999999999999 89999887 3 566799999999999999999999 99999887
Q ss_pred -EEEEEec
Q 004006 225 -VLTVKLD 231 (779)
Q Consensus 225 -~~~v~~~ 231 (779)
++.|.++
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 5777664
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-13 Score=123.86 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=71.5
Q ss_pred cceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+++|||+|||+ .+++++|+++|++||.|.+|+++.+ + +|||||+|.+.++|.+|++.+ ||..++|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~-~-----~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT-C-----SSCCEEECTTTHHHHHHHHHH--TTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCeecCeEEEEE
Confidence 46999999999 9999999999999999999999987 3 799999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++..
T Consensus 75 ~a~~~ 79 (198)
T 1qm9_A 75 LSKHQ 79 (198)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98755
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-11 Score=123.42 Aligned_cols=230 Identities=8% Similarity=0.014 Sum_probs=149.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------CCcccHH
Q 004006 512 LINGFLKLKDWANVFAVFEDVMRDGLK-PD----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR------PTSRTFM 580 (779)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~ 580 (779)
....+...|++++|+..|++..+.... .+ ..++..+...|...|++++|+..+++....... ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344556677777777777777653111 12 345667777777888888887777776543111 0133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRS----GCI-PTVHTFNALILGLVEKRQMEKAIEILDEMTL-----AGISPNEHTYT 650 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~~~~~~~~ 650 (779)
.+...|...|++++|+..|++..+. +.. ....+++.+..+|...|++++|+..|++.++ .. .....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6777777888888888887776642 111 1134667777788888888888888887765 33 22356777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGL----ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILI 723 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (779)
.+...|.+.|++++|..++++.++... ......+..+...|...|+ +++|..++++... .+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHH
Confidence 788888888888888888888876421 2223345566666666777 6677776665211 112234566788
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004006 724 DGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|...|++++|.+.++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-11 Score=134.54 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|+.|...|.+.|++++|++.|+++++.... +..+|+.+..+|.+.|++++|++.|++.++.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4567899999999999999999999999987533 6789999999999999999999999999997533 6889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
+|.+.|++++|++.|+++.+.... +..+|+.++.+|.+.|++++|++.|++..+.+ +.+..++..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999998665 78899999999999999999999999999985 5568889999999999999999
Q ss_pred HHHHHHHHHH
Q 004006 455 CLIVFERLKE 464 (779)
Q Consensus 455 a~~~~~~~~~ 464 (779)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-10 Score=121.45 Aligned_cols=309 Identities=12% Similarity=0.048 Sum_probs=143.2
Q ss_pred HHHHHHHHHHH--HHcCChHHHHHHHHHHHHC--CCCCC--HhhHHHHHHHH--HccCChHHHH---------HHHHHHH
Q 004006 296 RREFGLMVNYY--ARRGDMHRARQTFENMRAR--GIEPT--LHVYTNLIHAY--AVGRDMEEAL---------SCVRKMK 358 (779)
Q Consensus 296 ~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~li~~~--~~~g~~~~A~---------~~~~~m~ 358 (779)
...-..|-.+| ...+++++|..+++++.+. .+..| ...|-.++..- .-.+.+..+. +.++.+.
T Consensus 10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 89 (378)
T 3q15_A 10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE 89 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHh
Confidence 33344455566 7889999999999987653 22122 23334443321 1112222222 4444443
Q ss_pred HcCCCCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 359 EEGIEMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-L----NAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 359 ~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
......+ ...+...+..+...|++++|+..|+++.+.-.. . ...++..++.+|...|++++|+..+++..+
T Consensus 90 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 90 TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2110001 112334455556677777777777776653111 1 234566666666666666666666666554
Q ss_pred cCC--C----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004006 430 EGI--D----APIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 430 ~~~--~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (779)
... . ....+++.+..+|...|++++|++.|++..+. +... ...++..+..+|...|++++|++.+++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 210 0 01233445555555555555555555554431 1000 11234444444555555555555444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--
Q 004006 499 SSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR-DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-- 575 (779)
Q Consensus 499 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 575 (779)
+.. .. .... ...++..+..++.+.|++++|...+++........+
T Consensus 250 ~~~-------------------------------~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 297 (378)
T 3q15_A 250 KVS-------------------------------REKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK 297 (378)
T ss_dssp HHH-------------------------------HHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred HHH-------------------------------HhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 300 00 2111 134444455555555555555555555444321111
Q ss_pred --cccHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 576 --SRTFMPIIHGFARAGE---MKRALEIFDMMRRSGCIP-TVHTFNALILGLVEKRQMEKAIEILDEMTL 639 (779)
Q Consensus 576 --~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 639 (779)
...+..+...|...++ +.+|+..+++. +..+ ....+..+...|...|++++|...|++..+
T Consensus 298 ~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 298 FYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122233333444444 44444444431 1111 123444556666666777777766666543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-10 Score=116.95 Aligned_cols=235 Identities=10% Similarity=-0.006 Sum_probs=144.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HhHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLH----VYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MS----LVTY 369 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~ 369 (779)
+..+...+...|++++|+..+++........+.. +++.+...+...|++++|...+++.++.... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445567778999999999999988764222222 4566677788889999999999887652110 11 2335
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcC----CC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----Chhh
Q 004006 370 SIIVGGFAKMGNAEAADHWFEEAKERH----AT--L-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA----PIDI 438 (779)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~ 438 (779)
..+...+...|++++|+..|+++.... .. + ...++..+..+|...|++++|.+.+++........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667788888899999988888876532 11 1 23455667777888888888888888777643211 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 004006 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI-ISYG-----CLINLYTKIGKVSKALEVSKVMKSSGIKH---NMKTY 509 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~ 509 (779)
+..+...+...|++++|...+++........+. ..+. ..+..+...|++++|...+++........ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 556667777777777777777776543111111 1111 22233556677777777766655432111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 510 SMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
..+...+...|++++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555666666666666665543
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=122.14 Aligned_cols=77 Identities=10% Similarity=0.223 Sum_probs=71.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~ 227 (779)
++++|||+|||..+++++|+++|++|| .|.+++++.+ ++|||||+|.+.++|.+|++.| ||..++ |+.|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l--~g~~~~~g~~l~ 221 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLR 221 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHH--TTCBSSSSCBCE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHH--CCCccCCCCeEE
Confidence 457999999999999999999999999 9999999753 2799999999999999999999 999999 99999
Q ss_pred EEecCCc
Q 004006 228 VKLDDGR 234 (779)
Q Consensus 228 v~~~~~~ 234 (779)
|.|++++
T Consensus 222 v~~a~~~ 228 (229)
T 2adc_A 222 VSFSKST 228 (229)
T ss_dssp EEECSSC
T ss_pred EEEecCC
Confidence 9999765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-10 Score=107.08 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..|..+...+...|++++|+..|+++.+.. ..+..++..+...+...|++++|.+.++++.+.. +.+...+..++..|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346667788888888888888888887653 2366777888888888888888888888887764 33677778888888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (779)
...|++++|+..|+++...... +...+..++.+|...|++++|.++++++.+.. +.+..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888776443 66777777777778888888888887777764 345566677777777777777777
Q ss_pred HHHHHHHHC
Q 004006 457 IVFERLKEC 465 (779)
Q Consensus 457 ~~~~~~~~~ 465 (779)
..++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777766553
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=116.79 Aligned_cols=75 Identities=28% Similarity=0.565 Sum_probs=67.5
Q ss_pred ccceEEeccCCCcCChHHHHHHHhcc----C-------CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQF----G-------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
+.++|||||||+++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .+ ||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-------~g~afV~f~~~~~A~~A~-~~--~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AF--DG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-------TTEEEEEESSHHHHHHHG-GG--TT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-------CCEEEEEeCCHHHHHHHH-Hh--CC
Confidence 45799999999999999999999999 6 6777776554 899999999999999999 78 99
Q ss_pred ceeeceEEEEEecCCc
Q 004006 219 VEFHGRVLTVKLDDGR 234 (779)
Q Consensus 219 ~~~~~~~~~v~~~~~~ 234 (779)
..++|+.|+|.++.+.
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHDY 88 (172)
T ss_dssp CEETTEECEEECCSSC
T ss_pred cEecCceeeecCCccc
Confidence 9999999999987655
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-11 Score=131.48 Aligned_cols=166 Identities=17% Similarity=0.034 Sum_probs=150.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+..+|+.|..+|.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|+..|+++++.+.. +..+|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4578999999999999999999999999997533 6889999999999999999999999999998655 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 489 (779)
+|.+.|++++|++.|++..+.+ +.+..+|+.+..+|...|++++|++.|++.++.... +...+..++.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999985 557889999999999999999999999999986433 67889999999999999999
Q ss_pred HHHHHHHHHH
Q 004006 490 ALEVSKVMKS 499 (779)
Q Consensus 490 A~~~~~~m~~ 499 (779)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=120.17 Aligned_cols=76 Identities=11% Similarity=0.227 Sum_probs=70.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee-ceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~-~~~~~v 228 (779)
+++|||+|||..+++++|+++|++|| .|.+++++.+ .+|||||+|.+.++|.+|+..| ||..++ |++|+|
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~------~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~v 191 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLRV 191 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST------TSSCEEEECSSHHHHHHHHHHH--TSSCCSSCCSCCE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHh--cCCccCCCCeEEE
Confidence 45999999999999999999999999 9999999764 2799999999999999999999 999999 999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999765
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-12 Score=125.02 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=73.8
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee----ceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH----GRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~----~~~ 225 (779)
++++|||+|||..+|+++|+++|++||.|.+|+|+.| .+|+++|||||+|.+.++|.+|+..| |+..+. ||+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~r~ 170 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERC--GDGAFLLTTTPRP 170 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHH--HHSCEESSSSCCB
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHh--cCCeEEecCCCce
Confidence 4569999999999999999999999999999999998 47999999999999999999999998 765553 999
Q ss_pred EEEEecCCc
Q 004006 226 LTVKLDDGR 234 (779)
Q Consensus 226 ~~v~~~~~~ 234 (779)
|.|.++...
T Consensus 171 i~v~~~~~~ 179 (261)
T 3sde_A 171 VIVEPMEQF 179 (261)
T ss_dssp CEEEECCCE
T ss_pred EEEeecccc
Confidence 999998765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.4e-10 Score=114.57 Aligned_cols=273 Identities=9% Similarity=-0.024 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH----HH
Q 004006 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMK----TYSMLINGFLKLKDWANVFAVFEDVMRDGLK-PDV----VL 543 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~----~~ 543 (779)
....+...+...|++++|...+++.....-..+.. .++.+...|...|++++|...+++..+.... .+. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455667778999999999999988754222322 4566677888899999999999887653211 122 23
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC----CC--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHH
Q 004006 544 YNNIIRAFCGMGNMDRAIHIVKEMQKER----HR--P-TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP----TVH 612 (779)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 612 (779)
+..+...+...|++++|...+++..... .. + ....+..+...+...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5667778889999999999998876542 11 1 22345567778888999999999999887653221 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPN--EHTYT----TIMHGYASLGDTGKAFEYFTKLRNEGLEL---DVFT 683 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~ 683 (779)
.+..+...+...|++++|..++++........+ ..... .++..+...|++++|..++++........ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677778888899999999999988765311111 11111 23344778899999999998887643221 1335
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 684 YEALLKACCKSGRMQSALAVTKEMSAQ----KIPRNT-FVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
+..+...+...|++++|...++++... +...+. ..+..+..++...|+.++|...+++..+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677788888999999999998887542 211122 35667788888899999999999988874
|
| >2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-12 Score=101.28 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=57.6
Q ss_pred CcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCCcc
Q 004006 161 NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235 (779)
Q Consensus 161 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~~~ 235 (779)
..+++++|+++|++||.|.+|+|+ ++++|||||+|.+.++|..|++.+ +| +.|++|+|.|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~~--~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS------SKKPGTAVVEFATVKAAELAVQNE--VG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE------SSSSSEEEEEESCHHHHHHHHHTC--CB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc------cCCCCEEEEEECCHHHHHHHHHhc--CC--CCCCeEEEEEccCCC
Confidence 568999999999999999999987 356999999999999999999865 55 679999999997764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-10 Score=110.02 Aligned_cols=207 Identities=13% Similarity=-0.027 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
++..+..+...|.+.|++++|+..|+++++....++...+..+..++...|++++|++.|++.++.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 567788899999999999999999999998764367788888999999999999999999999987533 6788999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNA-------IIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDG 445 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 445 (779)
+|...|++++|+..|+++.+..+. +. .+|..+..++...|++++|++.|++..+.+ +. +...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 999999999999999999987554 55 568889999999999999999999999864 33 35677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 446 YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLI 513 (779)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 513 (779)
|...|+ .+++++...+.. +...|..+. ....+.+++|+..|++..+.. +-+..+...+.
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~ 221 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 865553 345555544322 333443332 345567899999999998864 22444444443
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-12 Score=126.74 Aligned_cols=84 Identities=11% Similarity=0.224 Sum_probs=71.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccC-CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
...++|||+|||+.+++++|+++|++|| .|.+|+++.+ +. |+++|||||+|.+.++|.+|+..+ ||..++|+.|+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~-~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSL-RF-NTSRRFAYIDVTSKEDARYCVEKL--NGLKIEGYTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeC-CC-CCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEE
Confidence 3567999999999999999999999999 9999999987 44 889999999999999999999999 99999999999
Q ss_pred EEecCCcch
Q 004006 228 VKLDDGRRL 236 (779)
Q Consensus 228 v~~~~~~~~ 236 (779)
|.++.+...
T Consensus 191 v~~a~~~~~ 199 (292)
T 2ghp_A 191 TKVSNPLEK 199 (292)
T ss_dssp EEECCCC--
T ss_pred EEECCCCcc
Confidence 999977643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-10 Score=104.66 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004006 579 FMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658 (779)
Q Consensus 579 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 658 (779)
+..+...+...|++++|+..++++.+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 444555666667777777777666554332 56666667777777777777777777766553 3456667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004006 659 LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADL 738 (779)
Q Consensus 659 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 738 (779)
.|++++|..+++++.+.. +.+...+..++.+|...|++++|..+++++.+.. +.+...+..++..+...|++++|.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777664 4466677777777777778888887777776654 45667777777778888888888888
Q ss_pred HHHHHH
Q 004006 739 MQQMKQ 744 (779)
Q Consensus 739 ~~~m~~ 744 (779)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.4e-12 Score=117.56 Aligned_cols=75 Identities=27% Similarity=0.541 Sum_probs=65.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccC-----------CeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-----------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g-----------~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
..++|||+|||+++|+++|+++|++|| .|.++++ ++++|||||+|.+.++|.+|+ .+ ||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~Al-~l--~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-------NQDKNFAFLEFRSVDETTQAM-AF--DG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-------ETTTTEEEEEESCSHHHHHHG-GG--TT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-------cCCCCEEEEEeCCHHHHHHHH-Hh--cC
Confidence 346999999999999999999999995 4555555 445999999999999999999 78 99
Q ss_pred ceeeceEEEEEecCCc
Q 004006 219 VEFHGRVLTVKLDDGR 234 (779)
Q Consensus 219 ~~~~~~~~~v~~~~~~ 234 (779)
..++|+.|+|.++.+.
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EEETTEEEEEECCCCC
T ss_pred CEEcCceEEEeCCCCC
Confidence 9999999999998654
|
| >3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-12 Score=123.79 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=65.8
Q ss_pred ccceEEecc--CCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee---ce
Q 004006 150 QEGKIFVGN--LPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GR 224 (779)
Q Consensus 150 ~~~~~~v~~--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~---~~ 224 (779)
++.+||||| |++.+|+++|+++|++||.|.+|.+..+ ||||||+|.+.++|++|++.| ||..+- |+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-------kgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~~g~ 87 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEVVDDLGQ 87 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-------CSEEEEEESSHHHHHHHHHHT--TTCEEECTTSC
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCccccccCC
Confidence 445999999 6899999999999999999999877643 899999999999999999999 999983 45
Q ss_pred --EEEEEecCCc
Q 004006 225 --VLTVKLDDGR 234 (779)
Q Consensus 225 --~~~v~~~~~~ 234 (779)
++.|.++...
T Consensus 88 ~~~ly~~~~~~~ 99 (345)
T 3tht_A 88 KITLYLNFVEKV 99 (345)
T ss_dssp EEECEEEECSSE
T ss_pred ceEEEEEEeecc
Confidence 6788887533
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.9e-10 Score=106.01 Aligned_cols=203 Identities=15% Similarity=0.048 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004006 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (779)
Q Consensus 539 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 618 (779)
.|...+..+...+...|++++|+..|++........+...+..+..++...|++++|+..|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3667888899999999999999999999998876456777777888999999999999999999987654 677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 004006 619 LGLVEKRQMEKAIEILDEMTLAGISPNE-------HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL--DVFTYEALLK 689 (779)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 689 (779)
.+|...|++++|+..|++.++.. +.+. ..|..+...+...|++++|+..|+++++.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999998764 3344 457888888899999999999999998864 33 3567777887
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004006 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (779)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (779)
+|...| ..+++++...+ ..+...|..+. ....+.+++|+..+++..+. .|+....
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~ 216 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEI 216 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence 876544 44556665543 33444554333 34567789999999999984 5554433
|
| >3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=100.59 Aligned_cols=76 Identities=22% Similarity=0.180 Sum_probs=63.1
Q ss_pred ceEEeccCCCcC----------ChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 152 GKIFVGNLPNWI----------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 152 ~~~~v~~l~~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
..|.+.|+-..- -+++|++.|++||.|.+|.|.++ . ++|||||+|.+.++|.+|++.| ||..+
T Consensus 8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~----~~G~~fV~f~~~e~A~~Ai~~l--nG~~f 80 (114)
T 3s6e_A 8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-S----AQGNVYVKCPSIAAAIAAVNAL--HGRWF 80 (114)
T ss_dssp SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-C----TTCCEEEECSSHHHHHHHHHHH--TTCEE
T ss_pred cEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-C----CcEEEEEEECCHHHHHHHHHHh--CCCEE
Confidence 367777763211 23588999999999999999765 2 4899999999999999999999 99999
Q ss_pred eceEEEEEecCCc
Q 004006 222 HGRVLTVKLDDGR 234 (779)
Q Consensus 222 ~~~~~~v~~~~~~ 234 (779)
+||.|+|.++...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999998544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-09 Score=105.05 Aligned_cols=217 Identities=8% Similarity=0.023 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG--DMHRARQTFENMRARGIEPTLHVYTNLIHAY 341 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (779)
+.|..++++++..||. +...|+.-..++...| ++++++++++.++..+.+ +..+|+....++
T Consensus 50 ~~aL~~t~~~L~~nP~---------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL 113 (306)
T 3dra_A 50 ERALHITELGINELAS---------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcH---------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHH
Confidence 6788888888888887 4555666666777777 888888888888877543 556676666655
Q ss_pred ----Hcc---CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 342 ----AVG---RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE--AADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 342 ----~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+. +++++++++++++++... -+..+|+.-.-++.+.|.++ +++++++++.+.++. |..+|+....++.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 555 678888888888887653 37788888888888888877 888888888887655 7777777776766
Q ss_pred hcCC------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHH
Q 004006 413 QTRN------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK-CLIVFERLKECG--FSPSIISYGCLINLYTK 483 (779)
Q Consensus 413 ~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~g--~~~~~~~~~~li~~~~~ 483 (779)
..+. ++++++.+++++..+ +.|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..++++|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 6665 677777777777764 5566777776666666666333 333444443322 11245566666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 004006 484 IGKVSKALEVSKVMKS 499 (779)
Q Consensus 484 ~g~~~~A~~~~~~m~~ 499 (779)
.|+.++|.++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6666666666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=116.32 Aligned_cols=229 Identities=13% Similarity=0.078 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCC-CCHhhHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR------GIE-PTLHVYTN 336 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~~~ 336 (779)
+.|...|.++++.-.. ............+..+...|...|++++|+..|+++.+. +-. ....++..
T Consensus 18 ~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 18 GSAVPLCKQALEDLEK-------TSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp SSHHHHHHHHHHHHHH-------HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 8888888888763210 000000113556888999999999999999999998865 211 23457899
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc------C-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C-CCCChh
Q 004006 337 LIHAYAVGRDMEEALSCVRKMKEE------G-IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------H-ATLNAI 402 (779)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~ 402 (779)
+..+|...|++++|++.|++.++. . .+....++..++..|...|++++|+.+|+++.+. . ......
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1234678899999999999999999999999875 1 122456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCC-ChhhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCC
Q 004006 403 IYGNIIYAQCQTRNMERAEALVRDMEEE-------GIDA-PIDIYHMMMDGYTIIGNEE------KCLIVFERLKECGFS 468 (779)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~g~~ 468 (779)
++..++.+|...|++++|+++|+++.+. ...+ ....+..+...+...+... .+...+..+.. ...
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 8889999999999999999999998864 1122 2333444444444333322 22222221111 011
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 469 PSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 469 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
....++..+..+|...|++++|..+|++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 13557888999999999999999999988753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=114.57 Aligned_cols=157 Identities=12% Similarity=-0.003 Sum_probs=111.5
Q ss_pred HcCChHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCCHhHHHHHH
Q 004006 308 RRGDMHRARQTFENMRA-------RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE------GI-EMSLVTYSIIV 373 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~l~ 373 (779)
..|++++|+.+|++.++ .+......++..+..+|...|++++|+..|+++++. +- +....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34556666666555554 221224567888999999999999999999988764 21 22466788899
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCCChhhH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH-------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE------G-IDAPIDIY 439 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 439 (779)
..|...|++++|+..|+++.... ......++..++.+|...|++++|+++|+++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999887651 1224567778888888888888888888887764 1 11224556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKE 464 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (779)
..+...|...|++++|+..|+++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777777777777654
|
| >2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.9e-11 Score=88.92 Aligned_cols=72 Identities=15% Similarity=0.294 Sum_probs=61.9
Q ss_pred cceEEeccCCC----cCCh----HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceee
Q 004006 151 EGKIFVGNLPN----WIKK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (779)
Q Consensus 151 ~~~~~v~~l~~----~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~ 222 (779)
.++|+|.-.+. ..-+ .+|.+.|++||.|..++++.| .+||+|.+.++|.+|++ | ||..++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---------~~fVtF~d~~sAlaAi~-m--nG~~v~ 74 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---------KMWVTFLEGSSALNVLS-L--NGKELL 74 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---------SEEEEESSHHHHHHGGG-G--TTCEET
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---------CEEEEECChHHHHHHHh-c--CCeEeC
Confidence 45888887762 2333 578999999999999999987 38999999999999998 8 999999
Q ss_pred ceEEEEEecCCc
Q 004006 223 GRVLTVKLDDGR 234 (779)
Q Consensus 223 ~~~~~v~~~~~~ 234 (779)
||.|+|+++++.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-08 Score=99.44 Aligned_cols=223 Identities=6% Similarity=-0.049 Sum_probs=175.1
Q ss_pred HHcCC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH----Hcc
Q 004006 307 ARRGD-MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGF----AKM 379 (779)
Q Consensus 307 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~ 379 (779)
.+.|. .++|+.+++.++..+.. +..+|+.--.++...+ ++++++++++.++..+.. +..+|+.-...+ .+.
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 34444 47999999999988533 5667899999998888 999999999999987644 777888877777 666
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---
Q 004006 380 ---GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME--RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN--- 451 (779)
Q Consensus 380 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 451 (779)
+++++++.+++++.+.+.. |..+|+.-..++.+.|.++ ++++.++++++.+ ..+..+|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 7899999999999998766 8899999888888899888 9999999999886 5678888887777777776
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 004006 452 ---EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK-ALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANV 525 (779)
Q Consensus 452 ---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a 525 (779)
++++++.+++++..... |...|+-+...+.+.|+... +..+..++.+.+ -..+...+..++.+|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 88888888888876544 77888888888888877444 444555554422 123667777888888888888888
Q ss_pred HHHHHHHHH
Q 004006 526 FAVFEDVMR 534 (779)
Q Consensus 526 ~~~~~~~~~ 534 (779)
+++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888775
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-09 Score=107.81 Aligned_cols=160 Identities=13% Similarity=-0.021 Sum_probs=84.2
Q ss_pred HHHccCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHH
Q 004006 340 AYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNIIY 409 (779)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~ 409 (779)
.|...|++++|.+.|++.++. |-.. ...+|+.+..+|.+.|++++|+..|+++.+..... + ..++..++.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666555432 1111 13455666666666666666666666655431110 0 234555666
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHH
Q 004006 410 AQCQT-RNMERAEALVRDMEEEGIDA-P----IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI------ISYGCL 477 (779)
Q Consensus 410 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~------~~~~~l 477 (779)
+|... |++++|++.|++..+..... + ..+++.+...|...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 66666666666655431000 0 234555566666666666666666666654322111 134555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 004006 478 INLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~ 499 (779)
..++...|++++|+..|++..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5666666666666666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-09 Score=104.57 Aligned_cols=104 Identities=15% Similarity=0.005 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHhH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT---LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVT 368 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~ 368 (779)
.+...+..+...+.+.|++++|+..|+++++.... + ..++..+..+|.+.|++++|+..|++.++.... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 36677788899999999999999999999887422 3 567888889999999999999999999886321 22567
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHHHcCCC
Q 004006 369 YSIIVGGFAK--------MGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 369 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~ 398 (779)
+..+..++.+ .|++++|+..|+++.+..+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 7888888888 99999999999999887543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-09 Score=106.61 Aligned_cols=175 Identities=10% Similarity=-0.007 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCC-CcccHHHHHHHHHhcCCHHHH
Q 004006 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER----HRP-TSRTFMPIIHGFARAGEMKRA 595 (779)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a 595 (779)
++++|...|.+. +..|...|++++|...|++..... ... ...+|..+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666665543 556667777777777777665431 110 134556666666667777777
Q ss_pred HHHHHHHHHCCCCC-C----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 004006 596 LEIFDMMRRSGCIP-T----VHTFNALILGLVEK-RQMEKAIEILDEMTLAGIS-PN----EHTYTTIMHGYASLGDTGK 664 (779)
Q Consensus 596 ~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~ 664 (779)
+..|++..+..... + ..+++.+...|... |++++|+..|++.++.... .+ ..+|..+...|...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77666665431100 1 23555566666664 6666666666665542100 01 2345556666666666666
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004006 665 AFEYFTKLRNEGLELDV------FTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (779)
Q Consensus 665 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (779)
|+.+|+++.+....... ..|..++.++...|++++|...+++..+.
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666654322111 13455555666666666666666666543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-09 Score=100.26 Aligned_cols=189 Identities=12% Similarity=-0.012 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..+......+.+.|++++|+..|+++++.... +...|... ....- .......+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN--------------SEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHH
Confidence 34445667777889999999999988876311 23344440 00000 000111122244444
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--HHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN--EEK 454 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~ 454 (779)
.+.|++++|+..|+++.+..+. +..++..++.+|...|++++|++.|++..+.+ +.+..++..+...|...|+ .+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 4555555555555555444333 44445555555555555555555555554443 3334444444444433332 222
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004006 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSM 511 (779)
Q Consensus 455 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 511 (779)
+...+..... ..+....+..+..++...|++++|+..|++..+. .|+......
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 3333333321 1111222233344444555555555555555543 344443333
|
| >1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=93.37 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=70.7
Q ss_pred ccccceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCC-HHHHHHHHHHhhhCCceeeceE
Q 004006 148 FRQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG-PAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 148 ~~~~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
...++.|||+||++. ++.++|+++|++||.|..|.+++| .-.|||.|.+ ..+|..|+..+..+|..|+|..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-------AKEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 456789999999999 999999999999999999999998 4469999999 8999999999855688899999
Q ss_pred EEEEecCCc
Q 004006 226 LTVKLDDGR 234 (779)
Q Consensus 226 ~~v~~~~~~ 234 (779)
++++...+.
T Consensus 88 ~~~evL~Ge 96 (121)
T 1owx_A 88 VTWEVLEGE 96 (121)
T ss_dssp EEEEECCHH
T ss_pred EEEEECCCH
Confidence 999876444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7.3e-09 Score=89.42 Aligned_cols=130 Identities=19% Similarity=0.199 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.|..++..|...|++++|+.+|+++.+.+. .+...+..+...+...|++++|..+|+++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 356677777788888888888888776542 356677777777777788888888888877654 235667777777777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
..|++++|+.+|+++.+.... +..++..++.+|.+.|++++|.+.|+++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 788888888888777766433 5566677777777777777777777776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.5e-09 Score=97.79 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=106.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 004006 405 GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI 484 (779)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 484 (779)
..++.+|.+.|++++|+..|++..+.+ +.+..++..+..+|...|++++|+..|++.++.... +..+|..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 448999999999999999999999985 567889999999999999999999999999987533 678888998888776
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004006 485 GK--VSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (779)
Q Consensus 485 g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 549 (779)
|+ .+.+...++.... ..+....+..+..++...|++++|+..|++.++. .|+......+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 54 4455666665542 2233334455666777889999999999999875 566655555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.06 E-value=5.6e-07 Score=96.20 Aligned_cols=125 Identities=13% Similarity=0.072 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL-GDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
.+|...+..+.+.+..+.|..+|+++ ... ..+...|......-... ++.+.|..+|+..++.- ..+...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666778899999999998 322 23444554322222223 36999999999998863 3345566777888
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
....|+.+.|..+|+++. .....|...+..=...|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999872 3577888888877888999999998888874
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.05 E-value=3.6e-07 Score=97.73 Aligned_cols=371 Identities=10% Similarity=-0.000 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHhcCC-ccHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHC-CCC-CCHhhHHHH
Q 004006 264 EWHRREFRKAVETQP-ENWQAVVSAFERIK--KPSRREFGLMVNYYARRGD-MHRARQTFENMRAR-GIE-PTLHVYTNL 337 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~l 337 (779)
+.|+.+|++++..-| .+...+...|++.- -|+...|...+....+.|. .+....+|+.++.. |.. .+...|...
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 677888888877766 55666666666542 3677777777777666663 34566777777653 322 255677777
Q ss_pred HHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004006 338 IHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (779)
Q Consensus 338 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (779)
+..+.. .++++.+..+|++.+.....--...|...... .+......+..++.+.
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~--------------------- 149 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT--------------------- 149 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH---------------------
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH---------------------
Confidence 766542 35677788888888764211111122211111 1111111111111110
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG--N-----EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
...+..|..+++++...-...+...|...++.-...+ - .+.+..+|++++... .-+...|...+..+.+.|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 0112222222222221100012223333333222110 0 233445555555432 2234455555555555556
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhC
Q 004006 487 VSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG---------LKP---DVVLYNNIIRAFCGM 554 (779)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---------~~~---~~~~~~~l~~~~~~~ 554 (779)
.+.|.++|++.... +.+...|. .|+...+.++. ++.+.+.- ..+ ....|...+..+.+.
T Consensus 229 ~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 229 KEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 66666666555554 22222111 11111111111 11111100 000 124455666666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004006 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR-AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEI 633 (779)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 633 (779)
++.+.|..+|+.+ .. ...+...|...+..-.. .++.+.|..+|+...+.... +...|...+....+.|+.+.|..+
T Consensus 300 ~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888887 22 11222333322222222 33688888888888765322 445566667767778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 634 LDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN 674 (779)
Q Consensus 634 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 674 (779)
|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 377 ~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88862 2456677777666677888888888877764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-09 Score=101.27 Aligned_cols=186 Identities=5% Similarity=-0.050 Sum_probs=99.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIY 404 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 404 (779)
+...+..+...+.+.|++++|+..|+++++.... + ...+..++.+|.+.|++++|+..|+++.+..+. ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4455666666666777777777777777665321 3 556666777777777777777777777665332 123456
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004006 405 GNIIYAQCQ--------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGC 476 (779)
Q Consensus 405 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 476 (779)
..++.++.. .|++++|+..|+++.+.. +.+......+.. +..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 666666666 666777777776666653 112222211110 0000000 0011334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 004006 477 LINLYTKIGKVSKALEVSKVMKSSGIKH--NMKTYSMLINGFLKL----------KDWANVFAVFEDVMRD 535 (779)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~ 535 (779)
+..+|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|+..|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4555666666666666666655532111 123444455555543 5556666666665554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-08 Score=95.61 Aligned_cols=176 Identities=13% Similarity=0.066 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC----CHHHHHHHH
Q 004006 314 RARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG----NAEAADHWF 389 (779)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 389 (779)
+|+..|++..+.| +..++..+...|...+++++|++.|++..+.| +...+..|..+|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666553 55666666666666666666666666666654 45556666666655 4 566666666
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 004006 390 EEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGID-APIDIYHMMMDGYTI----IGNEEKCLIVFE 460 (779)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 460 (779)
++..+.+ +..++..|..+|.. .+++++|+++|++..+.+.. .....++.|..+|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 45556666666655 55666666666666554311 014455555555555 555666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 004006 461 RLKECGFSPSIISYGCLINLYTKI-G-----KVSKALEVSKVMKSSG 501 (779)
Q Consensus 461 ~~~~~g~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 501 (779)
+..+.+ .+...+..|..+|... | +.++|+..|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 655541 1333444555555432 2 5556666655555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-09 Score=121.47 Aligned_cols=152 Identities=9% Similarity=-0.005 Sum_probs=76.8
Q ss_pred HcCChHHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 004006 308 RRGDMHRARQTFENMR--------ARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (779)
..|++++|++.|+++. +.. ..+...+..+..+|...|++++|++.|++.++.+. -+...|..+..+|.+.
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 4455555555555555 221 11334455555555555555555555555554432 2445555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004006 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (779)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (779)
|++++|+..|+++.+..+. +...|..++.+|.+.|++++ ++.|++..+.+ +.+..+|..+..+|.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555554333 44455555555555555555 55555555543 333444555555555555555555555
Q ss_pred HHHHH
Q 004006 460 ERLKE 464 (779)
Q Consensus 460 ~~~~~ 464 (779)
++..+
T Consensus 558 ~~al~ 562 (681)
T 2pzi_A 558 DEVPP 562 (681)
T ss_dssp HTSCT
T ss_pred Hhhcc
Confidence 54443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=122.60 Aligned_cols=169 Identities=10% Similarity=-0.032 Sum_probs=141.8
Q ss_pred hhHHHHHHHHHH--------hcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH
Q 004006 263 REWHRREFRKAV--------ETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY 334 (779)
Q Consensus 263 ~~~a~~~f~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 334 (779)
.+.|.+.|++++ ..+|. +...|..+...|.+.|++++|+..|+++++.+.. +...|
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~ 470 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSE---------------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLV 470 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTT---------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHH
T ss_pred HHHHHHHHHHhhhhccccccccccc---------------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHH
Confidence 377888888887 55664 6677888999999999999999999999987533 77899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (779)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (779)
..+..+|...|++++|++.|++.++.... +...|..+..+|.+.|++++ ++.|+++.+.+.. +..+|..++.+|.+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHc
Confidence 99999999999999999999999987533 68889999999999999999 9999999998665 788999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 415 RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
|++++|++.|++..+.+ +.+..++..+..++...++
T Consensus 548 g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999999998764 3345677777777766554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-08 Score=94.90 Aligned_cols=187 Identities=14% Similarity=0.016 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---hHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTY 369 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~ 369 (779)
+...+..+...+.+.|++++|+..|+++++...... ...+..+..+|.+.|++++|+..|+++++.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 445567778889999999999999999998632211 357888889999999999999999999886432 22 255
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 370 SIIVGGFAK------------------MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 370 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
..+..++.+ .|++++|+..|+++.+..+. +..++..+.... .+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH---
Confidence 566666654 46777777777777766433 222322211110 0111110
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004006 432 IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--IISYGCLINLYTKIGKVSKALEVSKVMKSSG 501 (779)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (779)
.....+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123466788889999999999998887532211 2457788889999999999999998888764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-08 Score=96.16 Aligned_cols=180 Identities=10% Similarity=0.023 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
|+..|++....+ ..+..++..++.++...|++++|++++.+.+..+- ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665543 22444455666666677777777777766655432 1344555666667777777777777777766
Q ss_pred HCCCCC-----CHhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 464 ECGFSP-----SIISYGCLINL--YTKIG--KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 464 ~~g~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (779)
+. .+ +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 23 13333344433 22223 677777777776553 23333333444466667777777777765543
Q ss_pred CC---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004006 535 DG---------LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 535 ~g---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 571 (779)
.. -.-|..++..+|......|+ +|.++++++....
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 01245555555555555565 6666666666654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=3.5e-08 Score=96.11 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGC-IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-----NEHTYTTIMH 654 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~ 654 (779)
.+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .+ +..+...|+.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHH
Confidence 444444444555555555544443332 013334444444555555555555555555443 23 1333333333
Q ss_pred HH--HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----C----CCCCHHHHHH
Q 004006 655 GY--ASLG--DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ-----K----IPRNTFVYNI 721 (779)
Q Consensus 655 ~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~~~~~ 721 (779)
++ ...| ++.+|..+|+++.+. .|+..+...|+.++.+.|++++|...++.+.+. + -+.|..++..
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 31 1112 455555555554433 122222222333455555555555555543321 0 0223444434
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004006 722 LIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
+|......|+ +|.++++++.+
T Consensus 261 ~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 261 QITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHhCh--HHHHHHHHHHH
Confidence 4444444444 45555555554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.8e-10 Score=97.13 Aligned_cols=145 Identities=9% Similarity=0.011 Sum_probs=86.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
|...+...|++++|+..++....... -+...+..+..+|.+.|++++|++.|++.++... -+..+|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 34445556667777777776654421 1233455666677777777777777777766542 256677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL-VRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
+++|+..|+++.+..+. +..+|..++.+|.+.|++++|.+. +++..+.. +.+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 77777777777766444 566666777777777776655544 35666553 334455555555555444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-08 Score=86.89 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (779)
.|..+...+...|++++|+.+++++.+.. ..+...+..+...+...|++++|..+++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555566666666666666666665543 2345556666666666666777776666666654 335556666666777
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
..|++++|..+++++.... +.+...+..++.++.+.|++++|.++++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777666543 34566666677777777777777777777665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-08 Score=93.40 Aligned_cols=177 Identities=13% Similarity=0.046 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 004006 265 WHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG 344 (779)
Q Consensus 265 ~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (779)
+|...|.++.+.. +...+..|...|...|++++|+..|++..+.| +...+..|...|..
T Consensus 4 eA~~~~~~aa~~g-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~- 62 (212)
T 3rjv_A 4 EPGSQYQQQAEAG-----------------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR- 62 (212)
T ss_dssp CTTHHHHHHHHTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHCC-----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-
Confidence 5666777776642 56778889999999999999999999999876 67888899999888
Q ss_pred C----ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh--
Q 004006 345 R----DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHAT-LNAIIYGNIIYAQCQ-- 413 (779)
Q Consensus 345 g----~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-- 413 (779)
+ ++++|+++|++..+.| +...+..|..+|.. .+++++|+.+|++..+.+.. .+..++..|..+|..
T Consensus 63 ~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 63 NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCC
Confidence 6 8999999999998875 78889999999987 89999999999999987532 127889999999998
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 004006 414 --TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-G-----NEEKCLIVFERLKECGF 467 (779)
Q Consensus 414 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~g~ 467 (779)
.+++++|+..|++..+. ..+...+..|..+|... | +.++|+.+|++..+.|.
T Consensus 140 g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 140 HGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999987 23455778888888654 3 89999999999988763
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-08 Score=97.01 Aligned_cols=169 Identities=7% Similarity=0.052 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG-DMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (779)
+.|.+++++++..||. +...|+.--..+...| .+++++.+++.++..+.+ +..+|+....++.
T Consensus 71 e~AL~lt~~~L~~nP~---------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA---------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch---------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 6799999999999997 5555676667777778 599999999999988644 7788988888887
Q ss_pred cc-C-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 343 VG-R-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE--------AADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 343 ~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
+. + ++++++++++++++... .|...|+...-.+.+.|.++ ++++.++++.+.++. |..+|+....++.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 77 7 88999999999998754 38888988888877777776 899999999988766 8888888888888
Q ss_pred hcCC-------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 413 QTRN-------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 413 ~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
+.+. ++++++.+++++... +.|...|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7776 678888888888775 5677788777766666654
|
| >1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.2e-10 Score=84.07 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=61.1
Q ss_pred ccceEEeccCCCc-----CCh----HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCce
Q 004006 150 QEGKIFVGNLPNW-----IKK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (779)
Q Consensus 150 ~~~~~~v~~l~~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~ 220 (779)
+..+++|.-++.. .-+ .+|.+.|++||.|..++++.| + +||+|.+.++|.+||+ | ||..
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~--~fVtF~d~~sAl~AI~-l--dG~~ 81 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------Q--MLVTFADSHSALSVLD-V--DGMK 81 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------E--EEEECSCSHHHHHHHH-G--GGSE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------c--EEEEEcChHHHHHHHh-c--CCee
Confidence 3459999988632 222 468899999999999999988 2 9999999999999998 8 9999
Q ss_pred eeceEEEEEecCC
Q 004006 221 FHGRVLTVKLDDG 233 (779)
Q Consensus 221 ~~~~~~~v~~~~~ 233 (779)
++||.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-09 Score=93.92 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
+.|+..|.+++..+|. +...+..+...|.+.|++++|+..|+++++... .+..+|..+..+|.+
T Consensus 14 e~ai~~~~~a~~~~p~---------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQ---------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYEL 77 (150)
T ss_dssp HHHHHHHHHHSCSHHH---------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 9999999999987775 444567789999999999999999999999853 378899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW-FEEAKERHATLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (779)
.|++++|+..|++.++.... +..+|..+..+|.+.|++++|.+. ++++.+..+. +..+|......+...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99999999999999997533 788999999999999999876665 5888887655 77788877777776664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-07 Score=92.73 Aligned_cols=180 Identities=7% Similarity=0.001 Sum_probs=141.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc-C
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM-G 380 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-g 380 (779)
-......+..++|+++++.++..+.. +..+|+..-.++...| ++++++++++.++..... +..+|+.-..++.+. +
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 33344455668999999999998643 6677898888888888 599999999999987644 888999998888887 7
Q ss_pred -CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 381 -NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME--------RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (779)
Q Consensus 381 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (779)
++++++++++++.+.+.. |..+|+.-..++.+.|.++ ++++.++++++.+ ..+..+|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 899999999999988665 8888888877777777776 8888889888876 5578888888877777776
Q ss_pred -------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 004006 452 -------EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (779)
Q Consensus 452 -------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 487 (779)
++++++.+++++..... |...|+-+-..+.+.|+.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 67788888877775433 667777766666666543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-08 Score=100.19 Aligned_cols=165 Identities=7% Similarity=-0.012 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH-HHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY-SIIV 373 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~ 373 (779)
+...+..+...+.+.|++++|+..|+++.+.... +...+..+..+|...|++++|..+++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4455667888889999999999999999887533 66788888999999999999999999887753 344333 3333
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCH
Q 004006 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-APIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 452 (779)
..+.+.++.++|+..|+++....+. +...+..++.+|...|++++|++.|+++.+.+-. .+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4466778888888888888887655 7788888888888888888888888888886421 1255677777777777777
Q ss_pred HHHHHHHHHHH
Q 004006 453 EKCLIVFERLK 463 (779)
Q Consensus 453 ~~a~~~~~~~~ 463 (779)
++|...|.+..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=8.1e-08 Score=91.54 Aligned_cols=188 Identities=8% Similarity=-0.050 Sum_probs=130.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh--hhHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA--IIYG 405 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 405 (779)
+...+..+...+.+.|++++|+..|+++++..... ....+..++.+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778889999999999999998864221 1367888999999999999999999999987554221 2566
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 406 NIIYAQCQ------------------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 406 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
.++.++.+ .|++++|+..|+++++.. +.+..++..+.... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH----
Confidence 66666654 456666777776666652 22222222111100 0000000
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN----MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (779)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (779)
.....+...|.+.|++++|+..|+++.+.. |+ ...+..+..+|.+.|++++|...++.+...+..
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 112356788999999999999999998863 33 256888999999999999999999999887543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-08 Score=111.16 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 263 REWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (779)
Q Consensus 263 ~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (779)
.+.|...|.+++..+|. +...|..+...|.+.|++++|+..|++..+... .+...+..+..+|.
T Consensus 5 ~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQ---------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRW 68 (568)
T ss_dssp ----------------C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 38899999999999887 667788899999999999999999999998753 36788999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CChHH
Q 004006 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT---RNMER 419 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 419 (779)
..|++++|.+.|++.++... .+...+..+..+|.+.|++++|++.|+++.+.... +..++..++.++... |++++
T Consensus 69 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHH
Confidence 99999999999999998753 36889999999999999999999999999988654 788899999999999 99999
Q ss_pred HHHHHHHHHHcC
Q 004006 420 AEALVRDMEEEG 431 (779)
Q Consensus 420 A~~~~~~~~~~~ 431 (779)
|.+.+++..+.+
T Consensus 147 A~~~~~~al~~~ 158 (568)
T 2vsy_A 147 LSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.9e-09 Score=93.62 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG-FA 377 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~ 377 (779)
+..+...+.+.|++++|+..|+++.+... .+...+..+..+|...|++++|+..|++..+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 33455666667777777777766655421 245566666666666777777777766665542 133332222211 11
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCL 456 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 456 (779)
..+...+|+..|+++.+..+. +...+..++.++...|++++|++.|+++.+.+-.. +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 212223345555555554333 45555555555555555555555555555543111 1234455555555555555555
Q ss_pred HHHHHH
Q 004006 457 IVFERL 462 (779)
Q Consensus 457 ~~~~~~ 462 (779)
..|.+.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=100.63 Aligned_cols=164 Identities=12% Similarity=0.009 Sum_probs=89.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (779)
.|++++|.+++++..+.... . .+...+++++|...|++. +..|...|++++|+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 46678888888877664211 1 011146777777777654 3456677888888888
Q ss_pred HHHHHHcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 004006 389 FEEAKERHATL-----NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI---DA--PIDIYHMMMDGYTIIGNEEKCLIV 458 (779)
Q Consensus 389 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~ 458 (779)
|.++.+..... -..+|..++.+|.+.|++++|++.|++..+... .+ ...+++.+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77776542110 133566667777777777777777766654310 00 12334445555555 666666655
Q ss_pred HHHHHHCCCCC-----CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004006 459 FERLKECGFSP-----SIISYGCLINLYTKIGKVSKALEVSKVMK 498 (779)
Q Consensus 459 ~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (779)
|++..+..... ...++..+..+|.+.|++++|+..|++..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55544321000 02334444455555555555555554443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-08 Score=92.46 Aligned_cols=162 Identities=7% Similarity=0.015 Sum_probs=109.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-H
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA-Q 411 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 411 (779)
.+..+...+...|++++|+..|++.++... -+...+..+..+|.+.|++++|+..|+++....+ +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 455666777788888888888888776532 3677888888888888888888888888776643 44333332222 1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTKIGKVSKA 490 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A 490 (779)
...+...+|+..|++..+.+ +.+...+..+...+...|++++|+..|+++.+....+ +...+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345677777777654 4456777777777777888888888877777654322 244667777777777777777
Q ss_pred HHHHHHHH
Q 004006 491 LEVSKVMK 498 (779)
Q Consensus 491 ~~~~~~m~ 498 (779)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-08 Score=109.83 Aligned_cols=155 Identities=10% Similarity=-0.114 Sum_probs=122.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (779)
.|++++|+..|+++.+... .+...|..+...|...|++++|++.|++.++... .+...+..+..+|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999988743 3678899999999999999999999999998753 3688999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 004006 389 FEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNEEKCLIVFERLKEC 465 (779)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 465 (779)
|+++.+.... +...+..++.+|.+.|++++|++.|++..+.+ +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999998655 78899999999999999999999999999875 55678889999999999 9999999999999886
Q ss_pred CC
Q 004006 466 GF 467 (779)
Q Consensus 466 g~ 467 (779)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-08 Score=100.66 Aligned_cols=198 Identities=11% Similarity=0.031 Sum_probs=113.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004006 484 IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK-LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (779)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 562 (779)
.|++++|.+++++..+..-. .+.+ .+++++|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46677777777766553111 1222 46677777666554 345667788888887
Q ss_pred HHHHHHHcCCCC-----CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHH
Q 004006 563 IVKEMQKERHRP-----TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC---IP--TVHTFNALILGLVEKRQMEKAIE 632 (779)
Q Consensus 563 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~A~~ 632 (779)
.|.+........ -..+|..+...|.+.|++++|+..|++..+... .+ ...+++.+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 777765432111 123555666667777777777777776654311 01 12355566666666 77777777
Q ss_pred HHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChHHHHH
Q 004006 633 ILDEMTLAGISP-N----EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE-LD----VFTYEALLKACCKSGRMQSALA 702 (779)
Q Consensus 633 ~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~ 702 (779)
+|++.++..... + ..++..+...|...|++++|+..|+++++.... .+ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777665421000 1 245666666677777777777777766653110 01 2245555556666677777777
Q ss_pred HHHHHH
Q 004006 703 VTKEMS 708 (779)
Q Consensus 703 ~~~~~~ 708 (779)
.+++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777666
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.2e-08 Score=97.45 Aligned_cols=167 Identities=5% Similarity=-0.042 Sum_probs=134.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..+...+...|++++|...|++.++... -+...+..++..|.+.|++++|+.+|+++....+. ..........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHHH
Confidence 456677788888899999999999999988753 37888999999999999999999999999876542 2333444445
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcCCHH
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTKIGKVS 488 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~ 488 (779)
.+.+.++.++|++.|++..+.. +.+...+..+...|...|++++|+..|.++.+..... +...+..++.++...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 5778888888999999988875 5678888999999999999999999999988864321 2567888899999999999
Q ss_pred HHHHHHHHHHH
Q 004006 489 KALEVSKVMKS 499 (779)
Q Consensus 489 ~A~~~~~~m~~ 499 (779)
+|...|++...
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 98888876543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-08 Score=84.13 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+.+.|.+.|++++|+..|+++++... .+..+|..+..+|.+.|++++|++.|++.++.+. .+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 44566677788888888888888888777642 3667777777888888888888888888777643 256777777778
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 408 (779)
|...|++++|++.|+++.+..+. +..++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 88888888888888877776544 445544443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-06 Score=85.11 Aligned_cols=167 Identities=7% Similarity=-0.102 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHHCCCCCCHhh
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG----------DMHRARQTFENMRARGIEPTLHV 333 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~ 333 (779)
+.|...+++++..||.+. ..|+.--..+...| .+++++.+++.+...+.+ +..+
T Consensus 47 ~eaL~~t~~~L~~nP~~y---------------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~a 110 (331)
T 3dss_A 47 ESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGT 110 (331)
T ss_dssp HHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 579999999999999743 22332222222222 267899999999887543 7788
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 334 ~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
|+.-.-++.+.+ ++++++++++++++.... |...|+.-.-.+...|. ++++++.++++.+.++. |..+|+....+
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 988888888887 489999999999987644 88899998888888888 68999999999988766 88888887777
Q ss_pred HHhc--------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 411 QCQT--------------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 411 ~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
+... +.++++++.+.+.+..+ +.|..+|+.+-..+...
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6655 34677777777777764 55666666554444433
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.8e-09 Score=98.76 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=61.5
Q ss_pred CChHHHHHHHhccCCeeEEEEecCC---CCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCCc
Q 004006 163 IKKHLVMEFFRQFGPIKNVILIKGY---NNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (779)
Q Consensus 163 ~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~~ 234 (779)
-.+++|++.|++||.|.++.|+++. +.+|+++|++||+|.+.++|.+|+..| ||..++||.|+|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l--~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh--cCceECCeEEEEEEcCHH
Confidence 3457899999999999999998541 345689999999999999999999999 999999999999997543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-07 Score=85.89 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.+..+...+...|++++|+..|+++. .++..+|..+..+|...|++++|++.|++.++.. +.+...|..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35567788889999999999998874 4578889999999999999999999999998875 336888999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 378 KMGNAEAADHWFEEAKERHATLNA----------------IIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
+.|++++|+..|+++.+.... +. .++..++.+|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999886433 22 678888888889999999999998888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-08 Score=95.97 Aligned_cols=183 Identities=9% Similarity=-0.028 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC------
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLM-------VNYYARRGDMHRARQTFENMRARGIEPT------ 330 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~------ 330 (779)
+.|.+.|.++++.+|. ....|..+ ...+.+.++..+++..+.+.++. .|+
T Consensus 23 ~~A~~~F~~a~~~dP~---------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~ 85 (282)
T 4f3v_A 23 ARSLDLFTEITNYDES---------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEE
T ss_pred HHHHHHHHHHHHhChh---------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--Chhhhhhhh
Confidence 8999999999999997 45556656 46666666677777777766552 221
Q ss_pred ----------------HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 331 ----------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 331 ----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
...+-.+..++...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+....
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 1233446677888899999999998887754 3433777777788899999999999986654
Q ss_pred cCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 395 RHATL--NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 395 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
.. .+ ...++..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 164 ~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 164 WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 31 11 134778888888889999999999888875433232 3456677777888888888888888887753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-07 Score=79.24 Aligned_cols=98 Identities=12% Similarity=-0.000 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
..+......|.+.|++++|++.|++.++... .+..+|..+..+|.+.|++++|+..|+++++.+.. +..+|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 3455566666677777777777777666542 25666666777777777777777777777666444 566666666667
Q ss_pred HhcCChHHHHHHHHHHHHcC
Q 004006 412 CQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~ 431 (779)
...|++++|++.|++..+.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 77777777777766666653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=87.74 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...+..+...|.+.|++++|+..|+++++.+. .+...|..+..+|...|++++|+..|++.++.... +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 334455566666677777777777777666542 25566666666666667777777777666665422 4566666666
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 004006 375 GFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+|.+.|++++|+..|+++.+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-08 Score=101.82 Aligned_cols=148 Identities=14% Similarity=0.037 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------------
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT------------- 330 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------------- 330 (779)
+.|...|.+.+..++. +...|..+...|.+.|++++|+..|+++++......
T Consensus 130 ~~A~~~~~~a~~~~p~---------------~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~ 194 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLE---------------QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194 (336)
T ss_dssp ECCCCGGGCCHHHHHH---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH
T ss_pred ccccchhcCCHHHHHH---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence 5555555555554443 455677889999999999999999999998743221
Q ss_pred -HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 331 -LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 331 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
..+|..+..+|.+.|++++|+..|++.++... .+...|..+..+|...|++++|+..|+++.+..+. +..++..+..
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 272 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 35666677777777777777777777766542 25666777777777777777777777777666443 5566666666
Q ss_pred HHHhcCChHHH-HHHHHHHH
Q 004006 410 AQCQTRNMERA-EALVRDME 428 (779)
Q Consensus 410 ~~~~~g~~~~A-~~~~~~~~ 428 (779)
++.+.|+.++| ..+|+.|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666 33444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=7e-06 Score=81.31 Aligned_cols=192 Identities=8% Similarity=-0.056 Sum_probs=140.0
Q ss_pred HHHHHcCChH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004006 304 NYYARRGDMH-RARQTFENMRARGIEPTLHVYTNLIHAYAVGRD----------MEEALSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 304 ~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (779)
....+.|.+. +|+.+++.++..+.. +..+|+.--.++...+. +++++.+++.++..... +..+|+.-
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR 114 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHR 114 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3344566665 899999999987543 55667776666655444 68899999999887544 88999999
Q ss_pred HHHHHccCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 373 VGGFAKMGN--AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN-MERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 373 ~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
..++.+.|+ +++++.+++++.+.++. |..+|+.-..++...|. ++++++.++++++.+ +.+..+|+.....+...
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 888888884 89999999999998766 88899988888888888 589999999999886 56788888777666655
Q ss_pred --------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHC
Q 004006 450 --------------GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI-----------GKVSKALEVSKVMKSS 500 (779)
Q Consensus 450 --------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 500 (779)
+.++++++.+++....... |...|+-+--.+.+. +.++++++.++++.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777777765332 566665444444333 2355566666665553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.9e-07 Score=83.39 Aligned_cols=124 Identities=10% Similarity=-0.087 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG 660 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 660 (779)
.+...+...|++++|+..|+++. .++...|..+...|...|++++|+..|++.++.. +.+...|..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 33444555555555555555442 2344555555555555555555555555555432 233445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004006 661 DTGKAFEYFTKLRNEGLELDV----------------FTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (779)
Q Consensus 661 ~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (779)
++++|+..|+++++... .+. ..+..+..+|...|++++|...++++.+.
T Consensus 86 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555555554421 111 34444555555555555555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.4e-07 Score=81.47 Aligned_cols=129 Identities=16% Similarity=0.048 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..|..+...+...|++++|+..|++..+... .+..++..+..++...|++++|+..|++.++.. +.+...|..++.+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4566677888888888888888888877642 256777778888888888888888888887764 23567777788888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIY--GNIIYAQCQTRNMERAEALVRDME 428 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 428 (779)
...|++++|+..|+++.+.... +...+ ..++..+...|++++|++.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887776443 44444 333333566677777776666544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.9e-07 Score=90.13 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CC--HhH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTL-----HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE---MS--LVT 368 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~--~~~ 368 (779)
+...+..+...|++++|++.++...+....... ..+..+...+...|++++|+..|++.++.... .. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455555666666666666555544211000 11222333444445555555555555432110 00 224
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 004006 369 YSIIVGGFAKMGNAEAADHWFEEAK 393 (779)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (779)
++.++..|...|++++|+..|+++.
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.9e-07 Score=90.82 Aligned_cols=161 Identities=9% Similarity=-0.050 Sum_probs=75.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCC-CCH----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-C----hhhHHHH
Q 004006 338 IHAYAVGRDMEEALSCVRKMKEEGIE-MSL----VTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNI 407 (779)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~~g~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l 407 (779)
+..+...|++++|.+++++..+.... ++. ..+..+...+...|++++|+..|+++....... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34444455555555555554442111 110 112234444444455555555555555422111 1 1135555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHH
Q 004006 408 IYAQCQTRNMERAEALVRDMEEE-----GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSPS-IISYGC 476 (779)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~ 476 (779)
+.+|...|++++|+..|+++.+. +. .....+++.+...|.+.|++++|+..+++..+. +.... ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555555555555555555421 10 111234555556666666666666666555432 11111 345566
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHH
Q 004006 477 LINLYTKIGK-VSKALEVSKVMK 498 (779)
Q Consensus 477 li~~~~~~g~-~~~A~~~~~~m~ 498 (779)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666665554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-06 Score=84.82 Aligned_cols=126 Identities=8% Similarity=-0.060 Sum_probs=65.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhhHHH
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-AP----IDIYHM 441 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 441 (779)
.+..+...|++++|+.+++++.+..... + ...+..++..|...+++++|+..|+++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777788888888888777643211 1 112223555555666667777766666653211 11 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 442 MMDGYTIIGNEEKCLIVFERLKEC-----GFSP-SIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~-----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
+...|...|++++|+..|+++.+. +..+ ...++..+..+|.+.|++++|+..+++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555666666666666666555421 0000 1123444444455555555555444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.68 E-value=6.6e-07 Score=80.27 Aligned_cols=129 Identities=11% Similarity=-0.061 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
..+..+...+...|++++|...|++.++.. +.+..++..++.+|...|++++|+..|+++.+.... +..++..++.+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345666666777777777777777777653 225667777777777777777777777777766433 566677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYH--MMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
...|++++|.+.|+++.+.. +.+...+. .++..+...|++++|+..+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776653 22333332 22333555666666666665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-07 Score=81.67 Aligned_cols=111 Identities=10% Similarity=-0.039 Sum_probs=89.6
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChH
Q 004006 269 EFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDME 348 (779)
Q Consensus 269 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (779)
.|.+++..+|. +...+..+...+.+.|++++|+..|++++..+. .+...|..+..+|...|+++
T Consensus 9 ~~~~al~~~p~---------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 9 TIAMLNEISSD---------------TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp SHHHHTTCCHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHcCCHh---------------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHH
Confidence 46677777765 445567788888899999999999999888753 36778888888898999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 349 EALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 349 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+|+..|++.++... -+...+..+..+|...|++++|+..|+++.+..
T Consensus 73 ~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 73 LAIHSYSYGAVMDI-XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999888653 367788888889999999999999998888764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=82.14 Aligned_cols=97 Identities=12% Similarity=-0.053 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 367 VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (779)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (779)
..+..+...+.+.|++++|+..|+++...++. +...|..++.+|...|++++|++.|++..+.+ +.+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34455555555555555555555555555433 45555555555555555555555555555543 33444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 004006 447 TIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~ 465 (779)
...|++++|+..|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=93.70 Aligned_cols=98 Identities=17% Similarity=0.029 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...+.+.|++++|+..|+++++... .+...|..+..+|.+.|++++|+..+++.++... -+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 34455566666666666666666666666532 2455666666666666666666666666665432 245566666666
Q ss_pred HHccCCHHHHHHHHHHHHHc
Q 004006 376 FAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~ 395 (779)
|...|++++|+..|+++.+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.65 E-value=9.1e-07 Score=74.69 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...|..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|+.+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3456667777777777777777777777653 2255667777777777777777777777776653 2356666777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
|.+.|++++|+.+|+++.+.... +...+..+..++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 77777777777777777665433 4444544444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-06 Score=85.65 Aligned_cols=159 Identities=9% Similarity=0.001 Sum_probs=81.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--HHHHHH
Q 004006 617 LILGLVEKRQMEKAIEILDEMTLAGISPNE-----HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE---LD--VFTYEA 686 (779)
Q Consensus 617 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~~ 686 (779)
.+..+...|++++|++.+.+.++....... ..+..+...+...|++++|+..+++.++.... .. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344455555555555555555443211110 11223344455556666666666665543111 11 335566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HHHHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQ--KIPRN----TFVYNILIDGWARRGDVWEAADLMQQMKQEG----VQPD-VHTYT 755 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~pd-~~~~~ 755 (779)
++..|...|++++|..+++++.+. ..+.+ ..+|..++.+|.+.|++++|++++++.++.. .... ..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 666666666666666666665421 00111 1355666666666666666666666655421 1011 44566
Q ss_pred HHHHHHHhcCCcchH-HHhHh
Q 004006 756 SFINACKCSKSNQRN-GRSWS 775 (779)
Q Consensus 756 ~l~~a~~~~g~~~~a-~~~~~ 775 (779)
.+..+|.+.|+.++| ..+++
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 666666666666666 54444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-07 Score=76.93 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..+...+.+.|++++|+..|+++.+... .+..++..+..+|...|++++|+..|++.++... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 455677778888888888888888888877642 2567777777778888888888888888777542 35677777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (779)
+|.+.|++++|+..|+++.+.... +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777888888888888777766433 4455555655555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=92.27 Aligned_cols=99 Identities=17% Similarity=0.062 Sum_probs=76.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...+..+...+.+.|++++|+..|++.++... .+...|..+..+|.+.|++++|+..|+++.+.... +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 445677777788888888888888888877642 26777888888888888888888888888776544 6777888888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 004006 410 AQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~ 430 (779)
+|...|++++|+..|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888777764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-06 Score=73.68 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=67.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...|..+...+...|++++|.++|+++++.. +.+..++..++..|.+.|++++|+.+|+++.+.... +..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 3456666666666777777777777666653 225566666666666667777777766666665332 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (779)
|...|++++|...|+++.+.. +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 666666666666666665543 22333344443333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.6e-07 Score=75.58 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...+...|++++|+..|+++.+.. ..+...+..+..++...|++++|++.+++.++.. +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3456667777778888888888888877653 2256677777777777788888888887777653 2256677777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNM 417 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (779)
|.+.|++++|+..|+++.+.... +...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 77777777777777777766433 556666666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-07 Score=81.11 Aligned_cols=100 Identities=12% Similarity=-0.009 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...+..+...+.+.|++++|+..|++++..+. .+...|..+..+|...|++++|+..|++.++.+. -+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 344566677888889999999999999888753 3677788888888888999999999998888753 36777888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcC
Q 004006 375 GFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
+|...|++++|+..|+++.+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888999999998888887753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.5e-07 Score=75.98 Aligned_cols=117 Identities=11% Similarity=-0.044 Sum_probs=71.0
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...|..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|+..|+++.+.... +...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 34456666666667777777777777766653 225666666666676777777777777766665433 5556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
+|.+.|++++|++.|++..+.. +.+...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666666543 22334444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.7e-07 Score=81.37 Aligned_cols=118 Identities=10% Similarity=0.185 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA-YA 342 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~ 342 (779)
+.|...|.+++..+|. +...|..+...|...|++++|+..|+++.+... .+...+..+..+ +.
T Consensus 27 ~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQ---------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYY 90 (177)
T ss_dssp CCCCHHHHHHHHHCCS---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 8889999999988886 666788888999999999999999999887643 366777778877 77
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 343 VGRDM--EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 343 ~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
..|++ ++|+..|+++++... -+...+..++.+|...|++++|+..|+++.+....
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred hcCCcchHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888 999999999888643 36778888888899999999999999988887543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.3e-07 Score=82.06 Aligned_cols=123 Identities=10% Similarity=0.050 Sum_probs=89.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHccCCH--
Q 004006 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG-FAKMGNA-- 382 (779)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~~g~~-- 382 (779)
+...|++++|+..|++..+... .+...|..+..+|...|++++|+..|++.++... .+...+..++.+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 3456778888888888777642 3667788888888888888888888888877542 366777777777 6778887
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
++|+..|+++.+..+. +...+..++.+|...|++++|+..|+++.+..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888877544 66777788888888888888888888887764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.9e-07 Score=85.04 Aligned_cols=121 Identities=14% Similarity=0.027 Sum_probs=69.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCCHhHHHHHHHHHHccCC
Q 004006 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GI-EMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l~~~~~~~g~ 381 (779)
...|++++|+++++.+... ......++..+...+...|++++|+..+++.++. +. .....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755554332 2224456777777777777887777777776651 11 1124556666777777777
Q ss_pred HHHHHHHHHHHHHc---CC-C--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004006 382 AEAADHWFEEAKER---HA-T--LNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (779)
Q Consensus 382 ~~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (779)
+++|+..|++.... .. . ....++..+..++...|++++|++.+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777777766553 11 1 112345555666666666666666665554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.1e-07 Score=85.34 Aligned_cols=187 Identities=9% Similarity=-0.087 Sum_probs=120.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHH-------HHHHHccCChHHHHHHHHHHHHcCCCCC---------------
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNL-------IHAYAVGRDMEEALSCVRKMKEEGIEMS--------------- 365 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 365 (779)
+.++...|++.|.++.+.... ....|+.+ ...+.+.++..+++..+..-++. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 578899999999999887533 55677777 46666666666666655555441 111
Q ss_pred -------HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--Ch
Q 004006 366 -------LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PI 436 (779)
Q Consensus 366 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 436 (779)
...+..+...+...|++++|.++|+.+...+.. +. ....+...+.+.+++++|+..|+...... .+ ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 223445666777788888888888877665432 23 66667777778888888888887543321 11 02
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004006 437 DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (779)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (779)
.++..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3566667777777777777777777764322132 234555666677777777777777777765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=81.41 Aligned_cols=98 Identities=12% Similarity=-0.059 Sum_probs=60.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...+..+...+...|++++|+..|++.+.... .+...|..+..+|...|++++|+..|+++....+. +...+..++.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 34455556666666666666666666665532 25666666666666666666666666666665433 55566666666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 004006 411 QCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~ 430 (779)
|...|++++|++.|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-06 Score=72.91 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
..+..+...+...|++++|..+++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..++.+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 455556666666777777777777766654 3356666777777777777777777777776653 44566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 004006 727 ARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSN 767 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~ 767 (779)
.+.|++++|.+++++..+.. ..+...+..+..++...|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 77777777777777776642 22455666676677666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=89.06 Aligned_cols=151 Identities=13% Similarity=-0.032 Sum_probs=96.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HhHHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS--------------LVTYSIIVG 374 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~l~~ 374 (779)
.+++++|+..|+...+.. ..+...+..+...|.+.|++++|+..|++.++...... ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344555655555544321 11445677778888888888888888888877642211 366777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
+|.+.|++++|+..|+++++.... +..+|..++.+|...|++++|+..|+++.+.. +.+..++..+..++...|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766543 66667777777777777777777777766653 3345566666666666666665
Q ss_pred H-HHHHHHH
Q 004006 455 C-LIVFERL 462 (779)
Q Consensus 455 a-~~~~~~~ 462 (779)
+ ...|.+|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5 3344444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.9e-07 Score=83.35 Aligned_cols=156 Identities=10% Similarity=-0.025 Sum_probs=95.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCH
Q 004006 588 RAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA----GIS-PNEHTYTTIMHGYASLGDT 662 (779)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~ 662 (779)
..|++++|.++++.+... .......+..+...+...|++++|+..+++.++. +.. .....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 2224556666666777777777777777665541 111 1234566677777777788
Q ss_pred HHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC
Q 004006 663 GKAFEYFTKLRNE----GLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI-PRN----TFVYNILIDGWARRGD 731 (779)
Q Consensus 663 ~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 731 (779)
++|...+++.++. +.. .....+..+...+...|++++|...+++..+..- ..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777776653 101 1234567777788888888888888877653200 112 2245777888888888
Q ss_pred HHHHHHHHHHHHH
Q 004006 732 VWEAADLMQQMKQ 744 (779)
Q Consensus 732 ~~~A~~~~~~m~~ 744 (779)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=88.25 Aligned_cols=120 Identities=10% Similarity=-0.026 Sum_probs=59.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS----------------LVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.+..+...+...|++++|+..|++.++.... + ...|..+..+|.+.|++++|+..|+++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3444444555555555555555555443111 1 1445555555555566666666655555543
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 397 ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
.. +..++..++.+|...|++++|++.|++..+.. +.+..++..+..++...++.+++
T Consensus 119 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 32 44555555555555555555555555555542 22344444444444444444333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-06 Score=72.04 Aligned_cols=97 Identities=19% Similarity=0.123 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..|..+...+.+.|++++|+..|++.++... .+...|..+..+|.+.|++++|+..|++.++... -+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 3456667777777777777777777777642 2566777777777777777777777777777542 2566777777777
Q ss_pred HccCCHHHHHHHHHHHHHc
Q 004006 377 AKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~ 395 (779)
...|++++|+..|+++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777777665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.6e-06 Score=71.38 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004006 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (779)
Q Consensus 647 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (779)
..|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|...+++..+.+ +.+...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345566666777777777777777777664 4466777777777777777777777777777654 55666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 004006 727 ARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~ 745 (779)
...|++++|++.+++.++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777777663
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.5e-06 Score=74.23 Aligned_cols=98 Identities=9% Similarity=-0.073 Sum_probs=72.6
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
...+..+...+.+.|++++|+..|++.+..+. .+...|..+..+|.+.|++++|+..|+++...++. +...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 34555666777777888888888888777643 36777777788888888888888888888777544 66677777778
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 004006 411 QCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~ 430 (779)
|...|++++|++.|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888777665
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-06 Score=75.90 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..+...|.+.|++++|+..|++.++... .+...|..+..+|.+.|++++|+..|++.++... -+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 345567778888888888888888888887642 2667788888888888888888888888887643 35777888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC
Q 004006 375 GFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
+|.+.|++++|+..|+++.+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888776443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-06 Score=78.69 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---------------HhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPT---------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 361 (779)
..+..+...+.+.|++++|+..|+++++...... ..+|..+..+|.+.|++++|+..+++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3466688899999999999999999998632211 2688889999999999999999999999874
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH-HHHHHHHHc
Q 004006 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE-ALVRDMEEE 430 (779)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 430 (779)
+.+...+..+..+|...|++++|+..|+++.+.... +..++..+..++...++.+++. ..|..+...
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 347889999999999999999999999999988654 7788888888888877777766 555555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=8.2e-06 Score=67.82 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..+..+...+...|++++|+..|+++..... .+...+..+..++...|++++|...+++.++... .+...+..++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 4456677777777888888888877776532 2566677777777777777777777777776532 2566677777777
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
...|++++|+..|+++.+.... +...+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 7777777777777777665433 33444333
|
| >2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=67.01 Aligned_cols=72 Identities=17% Similarity=0.342 Sum_probs=66.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhcc-----CCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQF-----GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
.+++-+-|||..+++.-++.+...+ |.|..+.++.| -|-|+|+|.+...|.+|.=++ ||..|+||.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-------H~GAivef~d~~~AgKasLaL--~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-------FNGAIIIFRDSKFAAKMLMIL--NGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-------TTEEEEECSCHHHHHHHHHHH--SSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-------CCceEEEEccchhhHHHHhhc--CCeeecCeE
Confidence 4588999999999999999999999 99999999998 789999999999999998777 999999999
Q ss_pred EEEEec
Q 004006 226 LTVKLD 231 (779)
Q Consensus 226 ~~v~~~ 231 (779)
|++.=.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 999743
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.3e-06 Score=75.59 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=83.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...|..+...+.+.|++++|++.|++.++... -+...|..+..+|.+.|++++|+..|+++.+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 445677788888889999999999999888643 37888888889999999999999999998887654 7788888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 004006 410 AQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
+|...|++++|++.|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999998888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=5e-06 Score=70.50 Aligned_cols=105 Identities=9% Similarity=0.035 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 004006 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--IPRN----TFVYNI 721 (779)
Q Consensus 648 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~ 721 (779)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++.++.+ ...+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34455556666666666666666666554 3355566666666666666666666666655421 0111 135566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004006 722 LIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755 (779)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 755 (779)
++.++...|++++|++.|++.++. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 667777777777777777776653 45554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.8e-06 Score=70.62 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (779)
+..|.+.|.+.|++++|+..|+++++... .+...|+.+..+|.+.|++++|++.|++.+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444444444444444444321 133344444444444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=9e-06 Score=88.34 Aligned_cols=170 Identities=6% Similarity=-0.081 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHhh
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD----------MHRARQTFENMRARGIEPTLHV 333 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~ 333 (779)
++|.+.+++++..+|. +...|+.--.++...|+ ++++++.++.+.+.+.+ +..+
T Consensus 46 eeal~~~~~~l~~nP~---------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~a 109 (567)
T 1dce_A 46 ESVLELTSQILGANPD---------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGT 109 (567)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHHCch---------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 6899999999999997 44556655566666666 89999999999998644 7889
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004006 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (779)
Q Consensus 334 ~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (779)
|+.-.-++.+.+ ++++++++++++++.... +...|+.....+.+.| .++++++.++++.+.++. |..+|+....+
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHH
Confidence 999999999999 779999999999998644 8999999999999999 899999999999988766 88899888887
Q ss_pred HHhc--------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 411 QCQT--------------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 411 ~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
+.+. +.++++++.+++....+ +.+..+|+.+...+.+.++.
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 7764 44677888887777764 55667777776666666653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6e-07 Score=95.52 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
....|..+...|.+.|++++|+..|+++++...... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677788999999999999999999988632211 244445555555555555555555555544
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004006 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (779)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (779)
.. .+...|..+..+|...|++++|+..|+++.+..+. +..++..+..++.+.++.+++.
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 32 24444555555555555555555555555544322 3344444444444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=5e-06 Score=70.71 Aligned_cols=112 Identities=8% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 004006 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI--PRN----TFVYNI 721 (779)
Q Consensus 648 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 721 (779)
.|..+...+...|++++|..+|+++.+.. +.+...+..+..+|...|++++|..+++++....- ..+ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45555566666666666666666666554 33556666666666677777777777666654320 111 556667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 722 LIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACK 762 (779)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~ 762 (779)
++.+|.+.|++++|.+.++++.+. .|+...+..+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 777777777777777777777764 345555555544443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.5e-06 Score=70.87 Aligned_cols=97 Identities=19% Similarity=0.043 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
+...|..+...+...|++++|+..|++++.... .+...|..+..+|...|++++|+..|++.++.+. .+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344444444444444555555554444444321 1334444444444444444444444444444321 13344444444
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 004006 375 GFAKMGNAEAADHWFEEAK 393 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~ 393 (779)
+|...|++++|+..|+++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-05 Score=70.05 Aligned_cols=109 Identities=14% Similarity=0.043 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHH
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (779)
+...+..+...+.+.|++++|+..|++..+. .|+ ...|..+..+|...|++++|+..+++.++... .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 5667777888888889999999999888876 344 56777777888888888888888888777632 2567777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
.+..+|...|++++|+..|+++.+.... +...+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 7888888888888888888887776433 34444333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-05 Score=64.78 Aligned_cols=94 Identities=15% Similarity=0.056 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004006 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (779)
Q Consensus 649 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (779)
+..+...+...|++++|..+|+++.... +.+...+..+..+|...|++++|...+++..+.. +.+...+..++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444444555555555555544432 2244444555555555555555555555554432 3344445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 004006 729 RGDVWEAADLMQQMKQ 744 (779)
Q Consensus 729 ~g~~~~A~~~~~~m~~ 744 (779)
.|++++|.+++++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=69.18 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004006 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (779)
Q Consensus 645 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (779)
+...|..+...+...|++++|+..|++++... +.+...+..+..+|...|++++|...+++..+.+ +.+...|..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45556666666666666666666666666654 3356666666666777777777777777666654 445666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004006 725 GWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~ 744 (779)
+|...|++++|+..|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.1e-06 Score=69.74 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=41.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC
Q 004006 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (779)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (779)
.+...+.+.|++++|+..|+++++... .+...|..+..++...|++++|+..|++.++.... +...+..+..+|.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 344444444445555554444444321 13344444444444444444444444444443211 3444444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 004006 381 NAEAADHWFEEAKE 394 (779)
Q Consensus 381 ~~~~A~~~~~~~~~ 394 (779)
++++|+..|+++.+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=5.1e-06 Score=69.74 Aligned_cols=97 Identities=9% Similarity=-0.075 Sum_probs=86.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+..+...+.+.|++++|+..|++.++... -+...|..+..++...|++++|+..|+++.+..+. +...+..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 456677888899999999999999998753 37899999999999999999999999999998765 7889999999999
Q ss_pred hcCChHHHHHHHHHHHHcC
Q 004006 413 QTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~ 431 (779)
..|++++|++.|++..+.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-05 Score=68.94 Aligned_cols=98 Identities=10% Similarity=-0.044 Sum_probs=69.2
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYG 405 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (779)
+...+..+...+...|++++|+..|++.++.. |+ ...|..+..+|...|++++|+..|+++.+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 45567777777777788888888887777653 33 566777777777777777777777777766433 566677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 406 NIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
.++.+|...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777777777665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=8.1e-06 Score=69.37 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CC----HhHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MS----LVTYS 370 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~~ 370 (779)
..|..+...+...|++++|+..|+++.+.. ..+...+..+..+|...|++++|...+++.++.... .+ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 446667777788888888888888877764 235667777777777778888888888777664311 11 55666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
.++.+|.+.|++++|+..|+++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777777777777777777665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-05 Score=81.93 Aligned_cols=164 Identities=10% Similarity=0.020 Sum_probs=80.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhH
Q 004006 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNA-----IIYGNIIYAQCQTRNMERAEALVRDMEEE----GID-APIDIY 439 (779)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~ 439 (779)
..++..|.+.|++++|.+.+.++......... .+.+.+...+...|++++|.+++.+.... +.. ....++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 34455555555555555555544332111110 11222233333445555555555554431 111 112345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHH
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKEC--GF--SP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS--GIKHN----MKT 508 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~~--g~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~ 508 (779)
..+...|...|++++|..++.++... +. .+ ...++..++..|...|++++|..++++.... .+..+ ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 55666666666666666666665432 11 11 1335666667777777777777776665432 11111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 509 YSMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
+..+...+...+++++|...|.+..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555566677777766665554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.25 E-value=8.6e-06 Score=66.95 Aligned_cols=98 Identities=10% Similarity=-0.072 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LNAIIYGNIIYA 410 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~ 410 (779)
..+..+...+...|++++|...|++.++... .+...+..+..+|...|++++|+..|+++.+.... .+..++..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555555555555555555555554421 24445555555555555555555555555544211 034444555555
Q ss_pred HHhc-CChHHHHHHHHHHHHc
Q 004006 411 QCQT-RNMERAEALVRDMEEE 430 (779)
Q Consensus 411 ~~~~-g~~~~A~~~~~~~~~~ 430 (779)
|... |++++|++.++++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.8e-05 Score=79.85 Aligned_cols=55 Identities=9% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004006 514 NGFLKLKDWANVFAVFEDVMRDGLKPDV----------------VLYNNIIRAFCGMGNMDRAIHIVKEMQ 568 (779)
Q Consensus 514 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 568 (779)
..+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+++..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455667777777777766665332110 123445555555555555555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=9.3e-06 Score=86.64 Aligned_cols=117 Identities=13% Similarity=-0.068 Sum_probs=92.1
Q ss_pred ccCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004006 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (779)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (779)
|.+.|++ +.|.+.|.++++.+|. +...|..+..+|.+.|++++|+..|+++++...
T Consensus 16 ~~~~g~~---------~~A~~~~~~Al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 71 (477)
T 1wao_1 16 YFKAKDY---------ENAIKFYSQAIELNPS---------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK 71 (477)
T ss_dssp TTTTTCH---------HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHhCCH---------HHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 5556666 9999999999999886 677788899999999999999999999998753
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--HHccCCHHHHHHHHH
Q 004006 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--FAKMGNAEAADHWFE 390 (779)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 390 (779)
.+..+|..+..+|...|++++|++.|++.++.... +...+..+..+ +.+.|++++|++.++
T Consensus 72 -~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 72 -KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 36778888999999999999999999998886432 45566666666 788899999999888
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.9e-05 Score=82.54 Aligned_cols=174 Identities=7% Similarity=-0.057 Sum_probs=129.1
Q ss_pred HcCC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 308 RRGD-MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD----------MEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 308 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
+.|. .++|++.++++++.+.. +..+|+.--.++.+.|+ +++++++++.+++.... +..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3443 46889999999988543 66778888877777777 89999999999987644 788999999999
Q ss_pred HccC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----
Q 004006 377 AKMG--NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---- 449 (779)
Q Consensus 377 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 449 (779)
.+.| +++++++.++++.+.+.. |..+|+....++.+.| .++++++.++++++.+ +.+..+|+.....+...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 9999 779999999999998766 8888988888888888 8888888888888875 55677777777666553
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 004006 450 ----------GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (779)
Q Consensus 450 ----------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 486 (779)
+.++++++.+++....... |...|.-+...+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3345566666655554322 44455555554444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-05 Score=65.36 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HhHHHHHH
Q 004006 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTL---HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIV 373 (779)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~ 373 (779)
..+...+.+.|++++|+..|+.+.+.... +. ..+..+..++...|++++|+..|+++++.... + ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34556666777777777777777765322 22 35666667777777777777777777665322 3 45566667
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH 396 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~ 396 (779)
.+|.+.|++++|+..|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777777776653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.7e-06 Score=71.97 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHccCChHHHHHHHHHHHHcC--CC---CCH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIE-PT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IE---MSL 366 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~---~~~ 366 (779)
..+..+...|...|++++|+..+++..+.... .+ ..++..+...+...|++++|.+.+++.++.. .. ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667788888889999998888887764111 01 1356667777777788888877777765421 00 013
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 367 VTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
..+..+...|...|++++|+..|++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555666666666777777666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=65.58 Aligned_cols=96 Identities=17% Similarity=0.016 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 004006 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR--NTFVYNILIDG 725 (779)
Q Consensus 648 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 725 (779)
.+..+...+...|++++|..+++++++.. +.+...+..+..++...|++++|...++++.+.. +. +...+..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 44455555666666666666666666553 3355556666666666666666666666666543 33 45566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 004006 726 WARR-GDVWEAADLMQQMKQE 745 (779)
Q Consensus 726 ~~~~-g~~~~A~~~~~~m~~~ 745 (779)
+.+. |++++|++.++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666666553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.9e-05 Score=64.41 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=61.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---hhhHHHHH
Q 004006 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN---AIIYGNII 408 (779)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 408 (779)
..+...+...|++++|...|+++++.... +. ..+..++.+|.+.|++++|+..|+++....+. + ..++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34555666777777777777777665322 22 46666777777777777777777777765433 3 45566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 004006 409 YAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
.+|.+.|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777776665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-05 Score=83.65 Aligned_cols=144 Identities=11% Similarity=-0.025 Sum_probs=76.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HhHHHHHHH
Q 004006 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS--------------LVTYSIIVG 374 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~l~~ 374 (779)
.+++++|+..|+...+... -....|..+...|.+.|++++|+..|++.++...... ...|..+..
T Consensus 247 l~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544433211 1345677777778888888888888888776432211 345555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (779)
+|.+.|++++|+..|+++++.... +..+|..+..+|...|++++|+..|+++.+.. +.+..++..+..++...++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555433 45555555555555555555555555555442 2233444444444444444443
Q ss_pred H
Q 004006 455 C 455 (779)
Q Consensus 455 a 455 (779)
+
T Consensus 404 a 404 (457)
T 1kt0_A 404 R 404 (457)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-05 Score=69.71 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
+..+|..+..+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|+..|++.++.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34566667777777777777777777776654 556667777777777777777777777777663
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.9e-05 Score=67.05 Aligned_cols=63 Identities=16% Similarity=-0.011 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC------CH-----hhHHHHHHHHHccCChHHHHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEP------TL-----HVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (779)
..+..+.+.+.+.|++++|+..|++.++..... +. ..|+.+..++.+.|++++|+..|++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345567788888899999999999888763220 11 1444455555555555555555554444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.8e-05 Score=67.11 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC------C-----HhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM------S-----LVTYSIIVGGFAKMGNAEAADHWFEEAKER----- 395 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 395 (779)
..+......+.+.|++++|+..|++.++..... + ...|+.+..++.+.|++++|+..|+++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345556667778888888888888887753220 1 226777777777777777777777777765
Q ss_pred --CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 396 --HATLNAIIY----GNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 396 --~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++. +...| +..+.++...|++++|+..|++..+.
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 443 45566 66666666667777776666666553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=81.06 Aligned_cols=139 Identities=12% Similarity=-0.005 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..|..+...|.+.|++++|+..|+++++.- +.. ......+++ .+.. +.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHHH-HHHHHHHHHHHHHH
Confidence 346778899999999999999999988630 000 000011111 1100 11345566666666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (779)
.+.|++++|+..++++++.... +..+|..++.+|...|++++|++.|++..+.. +.+..++..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665433 55566666666666666666666666666653 334555555666666666555554
Q ss_pred H
Q 004006 457 I 457 (779)
Q Consensus 457 ~ 457 (779)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=6.5e-06 Score=87.84 Aligned_cols=121 Identities=17% Similarity=0.038 Sum_probs=79.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
+...|.+.|++++|++.|+++++... .+..+|..+..+|.+.|++++|++.+++.++... -+...|..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 44556667777888888877777632 2566777777777777777777777777777642 256677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNIIYA--QCQTRNMERAEALVR 425 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 425 (779)
+++|++.|+++.+.... +...+..+..+ +.+.|++++|+++++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777776433 44455555544 666677777777666
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=70.33 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGIS-PN----EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE-L----DVF 682 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~ 682 (779)
++..+...+...|++++|+..+++.++.... .+ ..++..+...|...|++++|..++++.++.... . ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666666666666655432100 11 135556666666677777777777666543100 0 134
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 683 TYEALLKACCKSGRMQSALAVTKEMSAQ----KI-PRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
++..+..++...|++++|...+++..+. +. ......+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666677777777777777777766532 10 01123566777777888888888888777664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-05 Score=80.34 Aligned_cols=139 Identities=10% Similarity=0.015 Sum_probs=105.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+..+...+.+.|++++|++.|++.++.- ++. ......+++. +.. ..+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHHHH
Confidence 46667778889999999999999887630 000 0011111111 111 115678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (779)
+.|++++|++.+++.++.+ +.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 556788999999999999999999999999886432 67788888888888888888765
Q ss_pred H
Q 004006 493 V 493 (779)
Q Consensus 493 ~ 493 (779)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-05 Score=70.37 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
...+..+...+.+.|++++|+..|++.+..- ..+....+..... +..+. +.+...|..+..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~------------~~~~~~~~~~~~~--~~~~~----~~~~~~~~nla~~ 72 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRL------------DTLILREKPGEPE--WVELD----RKNIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHTSCTTSHH--HHHHH----HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------HHhcccCCCCHHH--HHHHH----HHHHHHHHHHHHH
Confidence 4456666777777777777777777766530 0000000000000 00000 1134456666666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
|.+.|++++|+..++++++.++. +..+|..++.+|...|++++|++.|++..+.
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 66666666666666666665433 5556666666666666666666666666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=8.4e-06 Score=82.72 Aligned_cols=148 Identities=11% Similarity=-0.038 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..+..+...|.+.|++++|+..|+++++. .|+... +...+++.++...+ ....|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34666888899999999999999998876 333321 22233344433222 123677788888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG-YTIIGNEEKC 455 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 455 (779)
.+.|++++|+..|+++++.... +..+|..++.+|...|++++|+..|++..+.. +.+..++..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877543 67788888888888888888888888877653 3344555555555 3445666777
Q ss_pred HHHHHHHHHC
Q 004006 456 LIVFERLKEC 465 (779)
Q Consensus 456 ~~~~~~~~~~ 465 (779)
..+|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7788777654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.4e-06 Score=68.31 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=52.6
Q ss_pred cCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 004006 309 RGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (779)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (779)
.|++++|+..|+++++.+. ..+...+..+..+|...|++++|+..|++.++.... +..++..+..+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4666777777777766531 123445666666677777777777777777665422 5666666667777777777777
Q ss_pred HHHHHHHHc
Q 004006 387 HWFEEAKER 395 (779)
Q Consensus 387 ~~~~~~~~~ 395 (779)
..|+++...
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.7e-06 Score=69.00 Aligned_cols=86 Identities=20% Similarity=0.127 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004006 659 LGDTGKAFEYFTKLRNEG--LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (779)
Q Consensus 659 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (779)
.|++++|+..|+++++.+ -+.+...+..+..+|...|++++|...++++.+.+ +.+...+..++.+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777766653 12344566667777777777777777777776654 455666777777777777777777
Q ss_pred HHHHHHHHc
Q 004006 737 DLMQQMKQE 745 (779)
Q Consensus 737 ~~~~~m~~~ 745 (779)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=4e-05 Score=65.90 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHH
Q 004006 311 DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAAD 386 (779)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~ 386 (779)
++++|+..|++..+.| +.... |...|...+.+++|++.|++..+.| +...+..|..+|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666665 22233 5555555566666666666666654 55666666666665 56666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEG 431 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 431 (779)
.+|++..+.+ +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666553 45556666666665 566666666666665554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.6e-05 Score=80.60 Aligned_cols=148 Identities=11% Similarity=-0.062 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
..+..+...+.+.|++++|+..|++.++.. ++... +...|+++++...+. ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 446667778889999999999999988752 33321 233445555543331 24788999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHHcCCHHHH
Q 004006 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL-YTKIGKVSKA 490 (779)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~~A 490 (779)
.+.|++++|+..|++.++.+ +.+..+|..+..+|...|++++|+..|++.++.... +...+..+..+ ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 557889999999999999999999999998765322 45556666555 3445678888
Q ss_pred HHHHHHHHHC
Q 004006 491 LEVSKVMKSS 500 (779)
Q Consensus 491 ~~~~~~m~~~ 500 (779)
..+|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899888765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00016 Score=62.15 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHH
Q 004006 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERA 420 (779)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 420 (779)
+++++|++.|++..+.| +.... |...|...+.+++|+++|++..+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46677777777777766 22233 6666666677777777777777763 56677777777766 6777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004006 421 EALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECG 466 (779)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g 466 (779)
.+.|++..+.| +...+..|..+|.. .++.++|+++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777654 45566666666666 666777777776666654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.6e-05 Score=63.96 Aligned_cols=94 Identities=15% Similarity=0.028 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHH
Q 004006 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-------VHT 753 (779)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-------~~~ 753 (779)
...+..+...+...|++++|...+++..+.. +.+...|..++.+|.+.|++++|++.++++++. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4456667777777777777777777776654 456677777777777777777777777777763 344 455
Q ss_pred HHHHHHHHHhcCCcchHHHhHhhh
Q 004006 754 YTSFINACKCSKSNQRNGRSWSEA 777 (779)
Q Consensus 754 ~~~l~~a~~~~g~~~~a~~~~~~m 777 (779)
+..+..++...|+.++|.+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 666777777777777777666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=4.6e-05 Score=65.64 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 004006 661 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR----------MQSALAVTKEMSAQKIPRNTFVYNILIDGWARR- 729 (779)
Q Consensus 661 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 729 (779)
.+++|++.+++.++.. +.+...|..+..++...++ +++|+..|++.++.+ +.+...|..++.+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 3444444444444443 2344444444444444433 235666666655554 44455556666666554
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004006 730 ----------GDVWEAADLMQQMKQEGVQPDVHTYTSFINAC 761 (779)
Q Consensus 730 ----------g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~ 761 (779)
|++++|++.|+++++ +.|+...|...+..+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 366667777666666 456655555555443
|
| >1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=5e-05 Score=58.62 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=63.2
Q ss_pred ceEEeccCCCcC-Ch----HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 152 GKIFVGNLPNWI-KK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 152 ~~~~v~~l~~~~-~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
.+|+|.||+.++ +. +.++.+|.+|+.+......++ -.-..|.|.+.++|.+|...| +|..++|+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~L--h~~~f~g~~~ 76 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRL--HKTEFLGKEM 76 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTS--TTSEETTEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-------ceEEEEEeCChHHHHHHHHHh--ccceecCcee
Confidence 489999998876 43 356899999999998888876 456789999999999999999 9999999999
Q ss_pred EEEecCC
Q 004006 227 TVKLDDG 233 (779)
Q Consensus 227 ~v~~~~~ 233 (779)
+|-++.+
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999864
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0001 Score=63.43 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=67.7
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHCCCCCC
Q 004006 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDM----------HRARQTFENMRARGIEPT 330 (779)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~~~ 330 (779)
..++.|+..|.++++.+|. +...|..+..++.+.|++ ++|+..|++.++.+.. +
T Consensus 16 ~~feeA~~~~~~Ai~l~P~---------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~ 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL---------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-K 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred hHHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-c
Confidence 4459999999999999997 677777788888887765 4888888888877533 5
Q ss_pred HhhHHHHHHHHHccC-----------ChHHHHHHHHHHHHcCCCCCHhHH
Q 004006 331 LHVYTNLIHAYAVGR-----------DMEEALSCVRKMKEEGIEMSLVTY 369 (779)
Q Consensus 331 ~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~ 369 (779)
..+|..+..+|...| ++++|++.|++.++. .|+...|
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 667778888887664 677777777777774 3444444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00012 Score=60.55 Aligned_cols=81 Identities=7% Similarity=-0.099 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
+.|...|.+++..+|. +...|..+...|...|++++|+..|+++++... .+...|..+..+|..
T Consensus 2 ~~a~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQGTD---------------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTTTCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHH
Confidence 3577788888888876 566677888888889999999999988887743 356778888888888
Q ss_pred cCChHHHHHHHHHHHHc
Q 004006 344 GRDMEEALSCVRKMKEE 360 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~ 360 (779)
.|++++|...|++.++.
T Consensus 66 ~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 66 QGDRAGARQAWESGLAA 82 (115)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888887763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.5e-05 Score=64.09 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=30.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
.|..+...+...|++++|++.|++.++... .+...|..+..+|.+.|++++|+..|+++.+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444445555555555555555544321 23444555555555555555555555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00018 Score=76.08 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=70.6
Q ss_pred HHHHcCChHHHHHHHHHHHHC-----CC-CC-CHhhHHHHHHHHHccCChHHHHHHHHHHHH-----cCC-CCC-HhHHH
Q 004006 305 YYARRGDMHRARQTFENMRAR-----GI-EP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKE-----EGI-EMS-LVTYS 370 (779)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~-~~~~~ 370 (779)
.+..+|++++|+.++++.++. |. .| ...+++.|..+|...|++++|+.++++.++ .|. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455677788887777776652 11 11 124677777777777777777777776654 121 122 44566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc-----CCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 371 IIVGGFAKMGNAEAADHWFEEAKER-----HAT--LNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
.|+..|...|++++|+.+|+++.+. |.. ....+...+..++...+.+++|+.+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666542 111 0122333444444455555555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00018 Score=59.39 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 350 ALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 350 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
|++.|++.++... .+...+..+...|...|++++|+..|+++.+.... +...|..++.+|...|++++|+..|++..+
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444321 23444444444444555555555555544444322 344444444555555555555555444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=75.91 Aligned_cols=126 Identities=6% Similarity=-0.029 Sum_probs=79.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHH
Q 004006 620 GLVEKRQMEKAIEILDEMTLAG---ISP----NEHTYTTIMHGYASLGDTGKAFEYFTKLRNE-----GL-EL-DVFTYE 685 (779)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 685 (779)
.+...|++++|+.++++.++.. +-+ ...+++.|..+|...|++++|..++++.++. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445677777777776655321 111 1346777777777777777777777776542 21 11 244577
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh-----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 686 ALLKACCKSGRMQSALAVTKEMSA-----QK--IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
.|...|...|++++|+.++++..+ .| .+....+.+.|..++...+++++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887777653 23 1111234466667777778888888888887653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00047 Score=53.75 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=26.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
.+..+...|.+.|++++|+..|+++.+.... +..++..++.+|.+.|++++|++.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344444444444444444444444443222 333444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00052 Score=53.50 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=35.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (779)
.+..+...+...|++++|+..|++.++.. +.+...+..+..+|.+.|++++|+..|+++.+..+. +..++..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34444444444455555555555444432 113444555555555555555555555555544322 334444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.48 E-value=0.17 Score=56.73 Aligned_cols=272 Identities=13% Similarity=0.084 Sum_probs=142.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 004006 481 YTKIGKVSKALEVSKVMKSSGIKHNM--KTYSMLINGFLKLKDWANVFAVFEDVMRDGL--K-----PDVVLYNNIIRAF 551 (779)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~-----~~~~~~~~l~~~~ 551 (779)
....|+.++++.++......+...+. ..-..+.-+....|..++++.++...+...- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566777776666554431101122 2333344445566665677777776654311 0 0111122222233
Q ss_pred HhCCC-HHHHHHHHHHHHHcCCCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCC
Q 004006 552 CGMGN-MDRAIHIVKEMQKERHRPTSRTFM--PIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNAL--ILGLVEKRQ 626 (779)
Q Consensus 552 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~ 626 (779)
.-.|. -+++...+..+...... ...... .|...+...|+-+....++..+.+.. +..+...+ .-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33343 34566666666553211 111112 23333556788888888888776642 33333333 334556788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004006 627 MEKAIEILDEMTLAGISPNEHTYT---TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAV 703 (779)
Q Consensus 627 ~~~A~~~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (779)
.+.+..+++.+.... .|. .-|. .+..+|+..|+......++..+.+.. ..++...-.+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888777532 222 2232 34456777888777777888887642 22333333333344456776667777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004006 704 TKEMSAQKIPRNTFVYNILIDGWARRGDV-WEAADLMQQMKQEGVQPDVHTYTSFINACKC 763 (779)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~ 763 (779)
++.+.+.+ .+.+..-..+.-+..-.|.. .+++.++..+.. .+|..+-...+-+...
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 76665543 34444334444444445543 578888888874 3455544444444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00065 Score=54.30 Aligned_cols=64 Identities=19% Similarity=0.012 Sum_probs=37.3
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
+...+..+..+|.+.|++++|+..|+++.+.++. +..+|..++.+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555666666666666666666666555433 445556666666666666666666655544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0011 Score=52.94 Aligned_cols=63 Identities=27% Similarity=0.193 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (779)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (779)
+...+..+..+|...|++++|+..|+++.+.+ +.+...|..++.+|.+.|++++|++.+++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444445555555555555555444433 3334444445555555555555555554444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.035 Score=52.69 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHH
Q 004006 382 AEAADHWFEEAKERHATL-NAIIYGNIIYAQCQT-----RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEEK 454 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 454 (779)
...|...++++.+.+... +...|..++..|.+. |+.++|.+.|++.++.+-..+..++..+.+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 566777777777764331 345777777777774 78888888888888765323466777777777663 77888
Q ss_pred HHHHHHHHHHCCCC
Q 004006 455 CLIVFERLKECGFS 468 (779)
Q Consensus 455 a~~~~~~~~~~g~~ 468 (779)
+.+.+++.+.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 88888887776544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.044 Score=62.90 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=87.3
Q ss_pred HHHHcCChHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 305 YYARRGDMHRARQ-TFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 305 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
.....|++++|.+ ++..+ . +......++..+.+.|..++|+++.+.- ..-+......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345777877766 44211 1 1223367777777888888887665321 11233455678888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
+|.++.+.+ .+...|..++..+.+.++++.|+++|.++.. |..+...|...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887775433 2567788888888888888888888877643 4455555555666665544444443
Q ss_pred HCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004006 464 ECGFSPSIISYGCLINLYTKIGKVSKALEVS 494 (779)
Q Consensus 464 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (779)
..| -++....+|.+.|++++|++++
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 332 1223333444455555555444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0037 Score=62.00 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=30.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+..+|..+...+...|++++|...+++++..+ ++...|..+...+.-.|++++|++.|+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33344444433444455555555555555443 34444444444555555555555555555444
|
| >1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0032 Score=47.64 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=44.4
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
.+++ +.|.+..-.||.++|+.||.|. |+.+-| --|||.|.+++.|..|+..+
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD--------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD--------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET--------TEEEEECSCHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC--------CeEEEEecCHHHHHHHHHhc
Confidence 4555 9999999999999999999654 677766 48999999999999998865
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.02 Score=56.84 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004006 678 ELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTS 756 (779)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 756 (779)
+.+..+|..+...+...|++++|...++++...+ ++...|..+.+.+...|++++|.+.++++.+ +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 5678888888777777889999999999888876 6777788888888889999999999988887 4667666543
|
| >2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0056 Score=47.03 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=56.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhc-----cCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQ-----FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
+.+|.|.|||..+.++.|+-.|++ -|.|.+++.. .+-|+|+|.+.+.+++.++. ..+.|+|.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~---------~~~AvItF~d~~va~rVL~k---~~H~L~~~~ 75 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL---------GCGGVLTFREPADAERVLAQ---ADHELHGAQ 75 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE---------TTEEEEEESSHHHHHHHHTC---SCCBSSSSB
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc---------CCcEEEEEcChHHHHHHhcC---CcceecCeE
Confidence 359999999999999999999976 2578887664 25789999999999988863 388899999
Q ss_pred EEEEec
Q 004006 226 LTVKLD 231 (779)
Q Consensus 226 ~~v~~~ 231 (779)
|.|.-.
T Consensus 76 LsV~P~ 81 (104)
T 2dhx_A 76 LSLRPA 81 (104)
T ss_dssp CEEEEC
T ss_pred EEEEcC
Confidence 988643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.14 Score=44.60 Aligned_cols=98 Identities=11% Similarity=0.173 Sum_probs=47.5
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004006 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (779)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (779)
...|+++.|.++.+.+ -+...|..|.....+.|+++-|+++|.++.. +..+...|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455666665554443 1455566666666666666666665555432 233333444455554444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004006 422 ALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFE 460 (779)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (779)
++-+.....|. ++.....+...|+++++.++|.
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 44433333321 3333344445555555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.13 Score=48.84 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCh
Q 004006 347 MEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKM-----GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT-RNM 417 (779)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 417 (779)
...|..++++.++.. |+ -..|..|+..|.+. |+.++|.+.|++.++..+.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 457777788888753 44 56888999999884 99999999999999987654688888888888884 999
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHHH
Q 004006 418 ERAEALVRDMEEEGID--APIDIYHM 441 (779)
Q Consensus 418 ~~A~~~~~~~~~~~~~--~~~~~~~~ 441 (779)
+++.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999987644 54444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0035 Score=65.01 Aligned_cols=86 Identities=6% Similarity=-0.022 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----CC--CCCCHHHHHHHHH
Q 004006 659 LGDTGKAFEYFTKLRNE-----GL-EL-DVFTYEALLKACCKSGRMQSALAVTKEMSA-----QK--IPRNTFVYNILID 724 (779)
Q Consensus 659 ~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~~l~~ 724 (779)
.|++++|+.++++.++. |. .| -..+++.|..+|...|++++|+.+++++.+ .| .+....+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555666555555432 10 01 133566666666666666666666666542 12 1112235677777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004006 725 GWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~ 744 (779)
+|...|++++|+.++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777777654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.15 Score=41.38 Aligned_cols=141 Identities=15% Similarity=0.143 Sum_probs=98.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004006 586 FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 665 (779)
+.-.|..++..++..+..+. -+..-||.+|.-....-+-+-..++++..-.. -|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 34467788888888877764 25666777776666666666656665554321 111 235566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
...+-.+- -+....+..++.+...|+.+.-.+++..+... .+++....-.+..+|.+.|+..+|.+++.++.++
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 65554441 23445667788888999999999999886543 3788999999999999999999999999999998
Q ss_pred CCC
Q 004006 746 GVQ 748 (779)
Q Consensus 746 g~~ 748 (779)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.018 Score=45.40 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=23.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCChHHHHHHHHHHHH
Q 004006 304 NYYARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKE 359 (779)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (779)
..+.+.|++++|+..|+++.+... .+.. .+..+..+|...|++++|++.|++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444444444444321 1223 444444444444444444444444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.016 Score=45.73 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
..+.+.|++++|+..|++.++... .+.. .|..+..+|...|++++|+..|+++.+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334444555555555555554321 1334 4555555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0084 Score=62.28 Aligned_cols=90 Identities=10% Similarity=0.013 Sum_probs=58.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----CC--CCCCHHHHH
Q 004006 655 GYASLGDTGKAFEYFTKLRNEG---LEL----DVFTYEALLKACCKSGRMQSALAVTKEMSA-----QK--IPRNTFVYN 720 (779)
Q Consensus 655 ~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~ 720 (779)
.+.+.|++++|+.++++.++.. +.+ -..+++.|+.+|...|++++|+.+++++.+ .| .+....+|+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777776431 111 134677777778788888888877776653 12 111234577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 721 ILIDGWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~ 744 (779)
.|+.+|...|++++|+.+++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888888888888888887664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.044 Score=62.89 Aligned_cols=172 Identities=14% Similarity=0.173 Sum_probs=117.7
Q ss_pred HHHHhCCCHHHHHH-HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004006 549 RAFCGMGNMDRAIH-IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (779)
Q Consensus 549 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 627 (779)
......+++++|.+ ++..+. +......++..+.+.|..++|+++.+.... - .......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------~----f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQDQ--------K----FELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------H----HHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcch--------h----eehhhhcCCH
Confidence 44456889999877 552211 022337777888889999998876632211 1 2335678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004006 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (779)
Q Consensus 628 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (779)
++|+++.+.+ .+...|..|...+.+.++++.|.++|.++.+ |..+...|...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999886532 4678999999999999999999999998753 345666677788888877777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcc
Q 004006 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQ 768 (779)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~ 768 (779)
...+ -++.-..+|.+.|++++|++++.++.+ |...+......|..+
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~~---------~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQR---------FSEAAFLGSTYGLGD 779 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCCH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHcCC---------hHHHHHHHHHhCCCh
Confidence 6654 134445567788999999999877643 333444444555444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0076 Score=62.52 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=56.9
Q ss_pred HcCChHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHH-----cCC-CCC-HhHHHHHH
Q 004006 308 RRGDMHRARQTFENMRAR---GIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKE-----EGI-EMS-LVTYSIIV 373 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~-~~~~~~l~ 373 (779)
..|++++|+.++++.++. -+.++ ..+++.|..+|...|++++|+.++++.++ .|. .|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888888877652 11111 24677788888888888888888877654 221 122 34567777
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 004006 374 GGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~ 394 (779)
..|...|++++|+.+|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.39 E-value=3.8e-07 Score=91.26 Aligned_cols=264 Identities=8% Similarity=0.100 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (779)
+..|..|..++.+.|+..+|++.|-+. -|...|..+|.+..+.|.+++-...+.-.++. . .+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~-ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A-RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-C-CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h-cccccHHHHHHH
Confidence 345666666666666666666554322 14555666666666666666666555333332 2 244444556666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 004006 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (779)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (779)
|++.++..+-++++. .+|..-...++.-|...|.++.|.-+|..+.. |..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 666666544333221 24555555566666666666665555443321 23344445555655554
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (779)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (779)
.+.-.+ .-+..||-.+-.+|...+.+..|.-.--.++-.. .-...++..|...|.+++.+.+++.-...
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 433221 1267788888888998888887765544443221 11234667788889999999998886632
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCC------CCcccHHHHHHHHHhcCCHHHHH
Q 004006 536 GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE-RHR------PTSRTFMPIIHGFARAGEMKRAL 596 (779)
Q Consensus 536 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 596 (779)
.......|+-|.-.|++- +.++..+.++..-+. ++. -....|.-++-.|.+-.++|.|.
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 223567777777777765 455555444432221 110 12344666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.014 Score=60.67 Aligned_cols=93 Identities=13% Similarity=-0.051 Sum_probs=64.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC---CCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHc-----C-CCCC-Hh
Q 004006 302 MVNYYARRGDMHRARQTFENMRARG---IEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE-----G-IEMS-LV 367 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~-~~ 367 (779)
.+..+.+.|++++|+.++++.++.. +.++ ..+++.+..+|...|++++|+.++++.++. | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667888899999888887531 1111 246788888888888888888888877642 2 1122 44
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 368 TYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
+++.|...|...|++++|+.+|+++.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 577777777788888887777777654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.17 Score=44.07 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=66.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (779)
+....+.|+++.|.++.+.+ -+...|..|.......|+++-|+++|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34445678888887776655 1567788888888888888888888777643 44566666777777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 453 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
++..++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66555544444332 244455556667777777777643
|
| >1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.013 Score=46.77 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=55.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec-eEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG-RVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~-~~~~v~ 229 (779)
.+-|-|-+.|... -..+.+.|++||.|.+...... ..+-.|.|.+..+|++|+.. ||..++| -.|-|.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-------~NWihI~Y~s~~~A~rAL~k---NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-------GNWMHIRYQSKLQARKALSK---DGRIFGESIMIGVK 92 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-------SSEEEEEESSHHHHHHHHTT---TTCEETTTEECEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-------CCeEEEEeCCHHHHHHHHHh---CCeEecCCEEEEEE
Confidence 3478888888874 5677889999999998776322 57999999999999999965 9999985 555555
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
.-.
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.34 E-value=6.8e-06 Score=82.46 Aligned_cols=176 Identities=13% Similarity=0.081 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
-|+..|..+|.+..+.|++++-+..+....+. ..+...=+.|+-+|++.+++.+-.+++ -.+|..-...++
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHH
Confidence 35566788899999999999999988877765 335566679999999999887754443 135666667788
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC--------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 004006 374 GGFAKMGNAEAADHWFEEAKERH--------------------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID 433 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 433 (779)
+-|...|.++.|.-+|..+..-. -..+..+|..+-.+|...+.+.-|.-+--.++-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 88888888888877766542210 0124455666666666666655554443333211
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 004006 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI 484 (779)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 484 (779)
..-+..++..|...|.+++.+.+++.-... -+.....|+-|.-.|++-
T Consensus 229 --adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 229 --ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp --SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 111223445556666666666665554421 122455566666555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.029 Score=47.61 Aligned_cols=82 Identities=12% Similarity=-0.009 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC---CHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHH
Q 004006 348 EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG---NAEAADHWFEEAKERH-ATLNAIIYGNIIYAQCQTRNMERAEAL 423 (779)
Q Consensus 348 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (779)
..+.+.|.+..+.|. ++..+...+..++++.+ ++++++.+|+.+.+.+ +..+...++.|..+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344455555555443 46666666666666666 4556666666666653 112345566666666666666666666
Q ss_pred HHHHHHc
Q 004006 424 VRDMEEE 430 (779)
Q Consensus 424 ~~~~~~~ 430 (779)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.031 Score=43.43 Aligned_cols=66 Identities=9% Similarity=0.001 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 679 LDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
.+...+..+..++...++ .++|..++++....+ +.+...+..++..+.+.|++++|+.+|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455566666666654443 567777777776655 556666666777777777777777777777653
|
| >1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.031 Score=42.54 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=57.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCC-cceEEEEeCCHHHHHHHHHHhhhCCceee
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~g~~~~ 222 (779)
.+|.|.+||+..|++++.+.++..+.+.....+..+...+.+ -+-|+|.|.+.+++..-.+.+ +|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~--~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF--DGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH--TTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh--CCcEEE
Confidence 378999999999999999999999888777777762222322 478999999999999999999 999983
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.039 Score=46.88 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 004006 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSG---RMQSALAVTKEMSAQKIPR--NTFVYNILIDGWARRGDVWEAAD 737 (779)
Q Consensus 663 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 737 (779)
..+.+.|.+..+.+ .++..+.-.+..++++++ +++++..+|++..+.+ .| +...+-.|.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 33444444444444 245555555555555555 4445555555555432 12 23344445555566666666666
Q ss_pred HHHHHHHcCCCCC
Q 004006 738 LMQQMKQEGVQPD 750 (779)
Q Consensus 738 ~~~~m~~~g~~pd 750 (779)
+++.+++ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 6666655 3454
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.04 Score=44.00 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=34.1
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERH------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
+..-+..|+..+.+.|+++.|+.+|+.+.+.. ......++..|+.+|.+.|++++|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445555555556666666666665555431 1113344555555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.059 Score=41.80 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=30.0
Q ss_pred CHhHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 365 SLVTYSIIVGGFAKMGN---AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 365 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
|...+..+..++...++ .++|..+|++++..++. +..+...++..+.+.|++++|++.|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433222 34555555555544333 4444444444555555555555555554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=2.8 Score=46.26 Aligned_cols=128 Identities=8% Similarity=0.018 Sum_probs=79.3
Q ss_pred HHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHc------CC-CCChh--
Q 004006 334 YTNLIHAYAVGRD-MEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEAKER------HA-TLNAI-- 402 (779)
Q Consensus 334 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~-~~~~~-- 402 (779)
-..+++.+...++ ++.|.++|+++.+....-+......++..+.+.+ +--+|.+++.+..+. .. ..+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 4455555555666 5789999999988642212222233333333333 233566766665531 11 11111
Q ss_pred --------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004006 403 --------IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (779)
Q Consensus 403 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (779)
....-+..+...|+++.|+++-++....- +.+..+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111333556889999999998888863 566888999999999999999999888776
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.62 Score=37.97 Aligned_cols=138 Identities=11% Similarity=0.075 Sum_probs=63.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
-.|..++..++..+..... +..-||++|--....-+-+-..++++.+-+. + |. ..+|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHHH
Confidence 4455666666666665532 4455555554444444444444444433221 1 11 12333333333
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004006 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (779)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 467 (779)
.|-++-. +.......+......|+.++-.+++.++... ..++......+..+|.+.|+..++.+++.+.-+.|+
T Consensus 83 C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3333211 2233333344445555555555555554331 244455555555555555555555555555555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.69 E-value=3.7 Score=46.18 Aligned_cols=222 Identities=12% Similarity=0.022 Sum_probs=101.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHH
Q 004006 551 FCGMGNMDRAIHIVKEMQKERHRPTS--RTFMPIIHGFARAGEMKRALEIFDMMRRSGC-------IPTVHTFNALILGL 621 (779)
Q Consensus 551 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~~~ 621 (779)
....|+.++++.++......+...+. ..=..+.-+....|..+++..++.......- .+....-.+|.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566666666666554432100111 1122233344555655566766666554211 01111222232333
Q ss_pred HhcCC-HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 004006 622 VEKRQ-MEKAIEILDEMTLAGISPNEHTYT--TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (779)
Q Consensus 622 ~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (779)
+-.|. -+++.+.+..++...- ....... .|...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+-+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 33332 2456666666654321 1111122 22233445566666666666666532 222222333333444667777
Q ss_pred HHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHhHhh
Q 004006 699 SALAVTKEMSAQKIPRNTFVY--NILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACKCSKSNQRNGRSWSE 776 (779)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~ 776 (779)
.+..+++.+.... .|....- .+++-+|+..|+.....+++..+... ...+..-...+.-++...|+.+.+.++++.
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 7777777776532 1222211 23444566677766666677777653 121222222222233345666655555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.11 Score=41.32 Aligned_cols=66 Identities=15% Similarity=0.032 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARG------IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (779)
+...+..|...+.+.|++..|+..|+.+.+.- -.....++..+..+|.+.|++++|+..+++.++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455667777777888888888777766531 0123445666666666666666666666666654
|
| >3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.031 Score=42.48 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=44.4
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
.++| +.|.+..-.||.++|+.||.| .|+.+-| .-|||.|.+++.|..|+..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--------TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--------TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--------TEEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--------CeEEEEecCHHHHHHHHHhc
Confidence 4455 999999999999999999954 4777766 48999999999999999876
|
| >3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.014 Score=59.76 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=42.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 213 (779)
.++|||. .+..+++.+|.+.|++||.|.++.+-.+ + .-|+.|||.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-F-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-S-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-C-----CeEEEEEeCCHHHHHHHHhc
Confidence 3599998 7999999999999999999999988766 1 25999999999999977643
|
| >3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.025 Score=45.80 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=53.2
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeE-EEEecC-----------CCCCC-CCcceEEEEeCCHHHHHHHHHHhhhCCc
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKG-----------YNNFE-KNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~-----------~~~~~-~~~g~~fv~f~~~~~a~~a~~~~~~~g~ 219 (779)
.|.|-+.|.. ....+.+.|++||.|.+ ..+.++ ++..+ ...+.-.|.|++..+|.+|+.. ||.
T Consensus 9 ~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~---NG~ 84 (132)
T 3p3d_A 9 AILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE---NGA 84 (132)
T ss_dssp EEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT---TTC
T ss_pred EEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh---CCe
Confidence 5666677666 45667778999999875 322211 00011 1256779999999999999865 999
Q ss_pred eeeceEEEEEecCCc
Q 004006 220 EFHGRVLTVKLDDGR 234 (779)
Q Consensus 220 ~~~~~~~~v~~~~~~ 234 (779)
.|+|..|-|..-.+.
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999987777665433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.2 Score=40.86 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHH
Q 004006 659 LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS---ALAVTKEMSAQKIP-RNTFVYNILIDGWARRGDVWE 734 (779)
Q Consensus 659 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 734 (779)
......+.+.|.+....|. ++..+--.+.+++.+..+..+ ++.+++++.+.+-+ ......-.|.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344555666666655553 566666677777877776444 77777777665311 133345566777888888888
Q ss_pred HHHHHHHHHHcCCCCC
Q 004006 735 AADLMQQMKQEGVQPD 750 (779)
Q Consensus 735 A~~~~~~m~~~g~~pd 750 (779)
|.++++.+++ +.|+
T Consensus 93 A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHH--hCCC
Confidence 8888888887 4664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.72 Score=38.57 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=33.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS 468 (779)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 468 (779)
.++.++|.++|+.+.... +.-..+|.+....-.+.|+..+|.+++.+.+..+.+
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 366777777777776542 222455555555556677777777777776666544
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.032 Score=48.71 Aligned_cols=35 Identities=14% Similarity=-0.071 Sum_probs=28.4
Q ss_pred EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc
Q 004006 180 NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (779)
Q Consensus 180 ~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~ 219 (779)
.++|+.+ .++++|||||+|.+.++|++|++.+ ++.
T Consensus 2 ~~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~--~~~ 36 (158)
T 2kn4_A 2 QYKLILN---GKTLKGETTTEAVDAATAEKVFKQY--AND 36 (158)
T ss_dssp EEEEEEE---CSSCEEEEEEECSSHHHHHHHHHHH--HHH
T ss_pred cEEEEec---CccccchhHHHHHHHHhHHHHHHhh--ccc
Confidence 4567766 2368999999999999999999887 653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.24 Score=40.30 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH---HHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHH
Q 004006 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA---ADHWFEEAKERH-ATLNAIIYGNIIYAQCQTRNMERAEA 422 (779)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (779)
+..+.+.|.+....|. ++..+-..+..++++..+..+ ++.+++.+...+ +.......+.|..++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444444433 455555555666666555444 555555555442 11233445555555666666666666
Q ss_pred HHHHHHHc
Q 004006 423 LVRDMEEE 430 (779)
Q Consensus 423 ~~~~~~~~ 430 (779)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.80 E-value=1.1 Score=37.56 Aligned_cols=102 Identities=8% Similarity=0.062 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHh-hHHHHHHH------HHccCChHHHHHHHHHHHHcC
Q 004006 295 SRREFGLMVNYYARRGDM------HRARQTFENMRARGIEPTLH-VYTNLIHA------YAVGRDMEEALSCVRKMKEEG 361 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~li~~------~~~~g~~~~A~~~~~~m~~~g 361 (779)
|..+|-..+...-+.|+. ++.+++|+++... +.|+.. .|...|.. +...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555766 6777788877764 344321 11111111 122356666666666665542
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 004006 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (779)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (779)
-.. ...|......-.+.|++..|.+++.+.+..+..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 122 555555555555666666666666666655433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.29 Score=53.86 Aligned_cols=130 Identities=9% Similarity=0.015 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-hHHHHHHHHHHHHc------CCC-CC---
Q 004006 298 EFGLMVNYYARRGD-MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD-MEEALSCVRKMKEE------GIE-MS--- 365 (779)
Q Consensus 298 ~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~-~~--- 365 (779)
.-..|+..+...|+ ++.|+.+|+++.+.....+......+|..+.+.++ --+|..++.+.++. ... .+
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34556677766676 47899999999887432222223334444433332 22455555544321 111 11
Q ss_pred -------HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004006 366 -------LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (779)
Q Consensus 366 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 428 (779)
.......+..+...|+++-|+++-+++...-+. +..+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 123444456677889999999999999987444 78999999999999999999999988773
|
| >2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.19 Score=38.44 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=51.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCC-cceEEEEeCCHHHHHHHHHHhhhCCceee
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~g~~~~ 222 (779)
+|.|..||+..|++++.+.++..-.+.....+..+...+.+ -+.|+|.|.+.++...-.+.. +|+.+-
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f--~g~~F~ 79 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF--DGYIFL 79 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS--TTEEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc--CCcEEE
Confidence 89999999999999998888776555444444442222333 367899999999999999988 999883
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.72 E-value=14 Score=38.26 Aligned_cols=93 Identities=9% Similarity=0.081 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHH
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRS--GCIPT---VHTFNALILGLVEKRQMEKAIEILDEMTL----AGISPN--EHTY 649 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~~~--~~~~ 649 (779)
.|...|...|++.+|.+++..+... +.... ...+..-+..|...+++..|..+++++.. ....++ ...|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3445555666666666666555421 11100 22344445556666666666666655431 111111 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 650 TTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 650 ~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
...+..+...+++.+|...|.++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555556666666666665554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.59 E-value=13 Score=38.42 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--HHH
Q 004006 440 HMMMDGYTIIGNEEKCLIVFERLKEC--GFSPS---IISYGCLINLYTKIGKVSKALEVSKVMKS----SGIKHN--MKT 508 (779)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~--~~~ 508 (779)
..|...|...|++.+|..++..+... |.... ...+..-+..|...+++.+|..+++++.. ....++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44566677777777777777766532 11111 23444556667777777777777766532 111111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 509 YSMLINGFLKLKDWANVFAVFEDVM 533 (779)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (779)
+..++..+...++|.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455556666677777666665543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.90 E-value=14 Score=37.06 Aligned_cols=222 Identities=10% Similarity=0.028 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCcccHH---
Q 004006 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPD-----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKER--HRPTSRTFM--- 580 (779)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~--- 580 (779)
.++..|...|++.+|..++.++.+.=-..| ..++..-+..|...+++.++..++....... +.++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 355666666666666666666554210101 2334455566677777777777666654331 111111111
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 004006 581 -PIIHGFA-RAGEMKRALEIFDMMRRSGCIPT------VHTFNALILGLVEKRQMEKAIEILD-EMTLAGISPNEHTYTT 651 (779)
Q Consensus 581 -~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~~~~~~~~~~~~ 651 (779)
.-...+. ..++|..|...|-+..+.--..+ ...|..| .+... ++..+.-.++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 1112234 56777777766655532100111 1122222 22222 22112112221 1111112344555566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (779)
++.+| ..+++.+...+++.... .+..|......+-..+.+ --...+.++.+ +-...++..|...+.- .
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~---pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT-----MLEQNLCRIIE---PYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH-----HHHHHHHHHHT---TCSEEEHHHHHHHHTC--C
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH-----HHHHHHHHHhH---hhceeeHHHHHHHHCc--C
Confidence 66654 44667666666655433 234455432211111100 00111122222 2233445555555433 6
Q ss_pred HHHHHHHHHHHHHcC
Q 004006 732 VWEAADLMQQMKQEG 746 (779)
Q Consensus 732 ~~~A~~~~~~m~~~g 746 (779)
.+++...+-+|+..|
T Consensus 330 ~~evE~~L~~lI~dg 344 (394)
T 3txn_A 330 MPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 788888888888764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.77 E-value=5.1 Score=33.21 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 678 ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (779)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (779)
.++..+--.+.+++.++.+ ..++..+++++...+-.......-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 3455555556666666554 345666666665533112233445556667777777777777777766 4554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=1.1 Score=45.75 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 004006 684 YEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTY 754 (779)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~ 754 (779)
...++.++...|+.+++...+..+.... +-+...|..+|.+|.+.|+..+|++.|+++.+ .|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666667777777777777666554 55666777777777777777777777776543 3777766543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.52 E-value=2.6 Score=49.96 Aligned_cols=195 Identities=12% Similarity=0.087 Sum_probs=120.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----------------
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH---------------- 396 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------- 396 (779)
....++..+.+.+.++-+.++...+ +.+......++.+|...|++++|..+|.++...-
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccc
Confidence 3445666677778887776654333 2355555677788888888888888887652210
Q ss_pred ------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 397 ------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI----DIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 397 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
...-...|..++..+.+.+.++.++++-...++.....+. ..|..+.+.+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 0001234667778888889998888887777664322222 257778888899999999998888887654
Q ss_pred CCCCHhhHHHHHHHHHHcCCHH------------HHHHHHHHHH-HC-CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 004006 467 FSPSIISYGCLINLYTKIGKVS------------KALEVSKVMK-SS-GIKHNMKTYSMLINGFLKLKDWANV-FAVFED 531 (779)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g~~~------------~A~~~~~~m~-~~-~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~ 531 (779)
.+ ......|+..++..|+.+ +..+++..-. .. .+......|..|-.-+...|++.+| .-+|+.
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 33 445666666666655544 4444443322 11 1122224455555556667777655 445565
Q ss_pred HHH
Q 004006 532 VMR 534 (779)
Q Consensus 532 ~~~ 534 (779)
+.+
T Consensus 1047 ~~R 1049 (1139)
T 4fhn_B 1047 LSR 1049 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.35 E-value=13 Score=35.81 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=15.2
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004006 725 GWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~ 744 (779)
-|.-.|+...|..+++...+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 45567889999999887653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.32 E-value=1.2 Score=38.16 Aligned_cols=115 Identities=9% Similarity=0.003 Sum_probs=64.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-------hhHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHhHHHH
Q 004006 302 MVNYYARRGDMHRARQTFENMRARG-IEPTL-------HVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IEMSLVTYSI 371 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ 371 (779)
-+..+...|.|+.|+-+.+.+.... ..++. .++..+..++...++|..|...|++.+... +.-...++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4677788899999988888865531 12232 256777788889999999999998865421 1111111111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
+. . ...... ......+...-+.+..+|.+.+++++|+.+++.+..
T Consensus 106 ~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10 0 000000 001122445556677778888888888887776543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.20 E-value=2.7 Score=34.39 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 678 ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (779)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (779)
.++..+--.+.+++.++.+ ..+++.+++++.+.+-......+-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 4566666666677777664 345677777766544112344556667777778888888888777776 4565
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.12 E-value=5.9 Score=46.88 Aligned_cols=186 Identities=10% Similarity=0.086 Sum_probs=112.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------
Q 004006 581 PIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA-------------------- 640 (779)
Q Consensus 581 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------------------- 640 (779)
.++..+.+.+.++.+.++.... .-+...--.+..+|...|++++|..+|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555566666666655543322 124444344556677788888888887653210
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 004006 641 G--ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV----FTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (779)
Q Consensus 641 ~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (779)
. ...-..-|..++..+.+.+.++.+.++-+..++..-..+. ..|..+.+++...|++++|...+-.+.+.. -
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 0 0111234677888888889999999888887765323232 257888899999999999999998887654 3
Q ss_pred CHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCcchHHHh
Q 004006 715 NTFVYNILIDGWARRGDV------------WEAADLMQQMKQEG--VQPDVHTYTSFINACKCSKSNQRNGRS 773 (779)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~------------~~A~~~~~~m~~~g--~~pd~~~~~~l~~a~~~~g~~~~a~~~ 773 (779)
-...+..|+..++..|.. ++..+++....+.. .......|..|-.-+...|++.+|.++
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 456677777777765544 44444443322211 111112355555556667787766654
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A | Back alignment and structure |
|---|
Probab=89.66 E-value=0.13 Score=44.21 Aligned_cols=42 Identities=12% Similarity=-0.042 Sum_probs=36.2
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCCc
Q 004006 191 EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (779)
Q Consensus 191 ~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~~ 234 (779)
.+.+|+++|+|.+.++|++|++.+ .||..++| .+.+.++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~-~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQY-ANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHH-HHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHH-hcCCCCCC-ceecccccCc
Confidence 456999999999999999999865 27899999 9999988654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.30 E-value=19 Score=36.12 Aligned_cols=168 Identities=11% Similarity=0.112 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcc-----cHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHH---
Q 004006 546 NIIRAFCGMGNMDRAIHIVKEMQKERHRPTSR-----TFMPIIHGFARAGEMKRALEIFDMMRRS--GCIPTVHTFN--- 615 (779)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 615 (779)
.++..|...|++.+|.+++..+.+.=...|.. .+...+..|...+++.++...+...... .+.++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 67889999999999999999887742222322 2445566788899999999999877643 1112332221
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHH
Q 004006 616 -ALILGLV-EKRQMEKAIEILDEMTLAGISPN------EHTYTTIMHGYASLGDTGKAFEYFT-KLRNEGLELDVFTYEA 686 (779)
Q Consensus 616 -~li~~~~-~~~~~~~A~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ 686 (779)
.-...+. ..++|..|...|-+..+.-.... ...|..|.. .. .++..+...++. +....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 1123455 68899999888776542110111 122322222 22 233222222222 2111112345555666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 004006 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTF 717 (779)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (779)
|+.+| ..+++.+...+++.... .+..|..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 66655 56778777777776533 2344554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.81 E-value=5 Score=30.77 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
.-+..+-++.+....+.|+..+..+.+++|-+.+++.-|.++|+-++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555555555554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.43 E-value=7.9 Score=31.64 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=33.7
Q ss_pred CCHhHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 364 MSLVTYSIIVGGFAKMGN---AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++..+-.....++++..+ ..+++.+++.+.+.+.......++.|..++.+.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444555555555555443 2345555555554433223444555555555555555555555555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.40 E-value=1.7 Score=33.28 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=57.2
Q ss_pred HHHHHHHHHH-cC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 684 YEALLKACCK-SG-RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINA 760 (779)
Q Consensus 684 ~~~l~~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a 760 (779)
|..--..|.. .. +.-+..+-++.+...++.|+..+....+++|.|.+++.-|+.+|+.++.+ ......+|..++.-
T Consensus 11 F~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 11 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 3333334443 33 45678888888888899999999999999999999999999999998876 33345567777654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.58 E-value=5.4 Score=34.11 Aligned_cols=24 Identities=4% Similarity=-0.164 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 004006 404 YGNIIYAQCQTRNMERAEALVRDM 427 (779)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~~ 427 (779)
+..++.++...+++.+|...|++.
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 344444455555555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.56 E-value=5.8 Score=40.20 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 004006 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN-----EGLELDVFT 683 (779)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 683 (779)
...++..+...|++++|+..+..+.... +-++..|..+|.+|...|+..+|++.|+.+.. .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445666777788888887777776654 55777788888888888888888888777653 477776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.49 E-value=28 Score=33.86 Aligned_cols=167 Identities=11% Similarity=0.068 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHH
Q 004006 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF----EDVMRDGLKPDVVLYNNII 548 (779)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~g~~~~~~~~~~l~ 548 (779)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...+-++- +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344556667777777777776543221 233344444443332 3334456666666666666
Q ss_pred HHHHhCCCHH-HHHHHHHHHH----HcC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 549 RAFCGMGNMD-RAIHIVKEMQ----KER--HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (779)
Q Consensus 549 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 621 (779)
..+......+ .-..++++++ +.| ..=+......+...|.+.+++.+|+..|- .|-.+....|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6665544311 1122222222 222 22245566677788888888888887763 22222335554444433
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 622 VEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
...+...+ .+... ...+--|.-.++...|..++....
T Consensus 178 ~~~~~~~e--------------~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHT--------------APLYC-ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGG--------------HHHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33332111 11111 222234455677788877666554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.36 E-value=7.8 Score=31.54 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
.-+..+-++.+....+-|+..+....+++|-+.+++.-|.++|+-++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555555555555443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.01 E-value=32 Score=33.22 Aligned_cols=25 Identities=8% Similarity=-0.144 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 505 NMKTYSMLINGFLKLKDWANVFAVF 529 (779)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (779)
+......+...|.+.+++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5566666677777777777776655
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.93 E-value=17 Score=30.10 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=35.4
Q ss_pred CCHhHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 364 MSLVTYSIIVGGFAKMGN---AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
++..+......++++..+ ..+++.+++.+...+........+.|..++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445555555555555543 3345555555555433334444555555566666666666666665554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.37 E-value=35 Score=33.21 Aligned_cols=25 Identities=0% Similarity=-0.020 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 505 NMKTYSMLINGFLKLKDWANVFAVF 529 (779)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (779)
+......+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555566667777777777776665
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.46 E-value=11 Score=38.71 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRAR--GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (779)
+..+...|.+.|++++|.++|.++... +...-...+-.+++.+...+++..+...++++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445667777777777777777776653 222233455556666666666666666666553
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.96 E-value=12 Score=38.44 Aligned_cols=62 Identities=15% Similarity=0.008 Sum_probs=39.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEE--GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (779)
+...+...|.+.|++++|.++|.++... +..--...+..+++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5566677777777777777777777653 2222345666666667777777777766666643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 779 | ||||
| d2cpha1 | 94 | d.58.7.1 (A:454-547) Probable RNA-binding protein | 4e-14 | |
| d1no8a_ | 78 | d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu | 1e-12 | |
| d1h2vz_ | 93 | d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro | 2e-11 | |
| d1cvja1 | 80 | d.58.7.1 (A:11-90) Poly(A)-binding protein {Human | 2e-11 | |
| d1wf2a_ | 98 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 2e-11 | |
| d1uawa_ | 77 | d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax | 3e-11 | |
| d2f9da1 | 114 | d.58.7.1 (A:12-125) Pre-mRNA branch site protein p | 4e-11 | |
| d2cpja1 | 86 | d.58.7.1 (A:65-150) Non-POU domain-containing octa | 2e-10 | |
| d1u2fa_ | 90 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 3e-10 | |
| d2disa1 | 96 | d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 { | 5e-10 | |
| d2msta_ | 75 | d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 | 6e-10 | |
| d1x0fa1 | 75 | d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 | 8e-10 | |
| d1b7fa2 | 85 | d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil | 9e-10 | |
| d1hd0a_ | 75 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 1e-09 | |
| d2cpfa1 | 85 | d.58.7.1 (A:362-446) Probable RNA-binding protein | 1e-09 | |
| d1x5ta1 | 83 | d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Hu | 2e-09 | |
| d2cq4a1 | 101 | d.58.7.1 (A:132-232) RNA binding protein 23 {Human | 3e-09 | |
| d1b7fa1 | 82 | d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil | 5e-09 | |
| d2ghpa1 | 81 | d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splici | 8e-09 | |
| d1fxla2 | 85 | d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho | 8e-09 | |
| d1x5ua1 | 93 | d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu | 9e-09 | |
| d1x4ba1 | 103 | d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle | 2e-08 | |
| d1x4aa1 | 95 | d.58.7.1 (A:9-103) Splicing factor, arginine/serin | 2e-08 | |
| d1l3ka1 | 84 | d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN | 3e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-08 | |
| d2ghpa3 | 86 | d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splici | 6e-08 | |
| d1fjca_ | 96 | d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice | 7e-08 | |
| d1whwa_ | 99 | d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm | 9e-08 | |
| d1cvja2 | 89 | d.58.7.1 (A:91-179) Poly(A)-binding protein {Human | 9e-08 | |
| d1x4ga1 | 96 | d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s | 1e-07 | |
| d2u2fa_ | 85 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 1e-07 | |
| d2cqpa1 | 86 | d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous | 1e-07 | |
| d2cqba1 | 89 | d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer | 1e-07 | |
| d2cqda1 | 103 | d.58.7.1 (A:1-103) RNA-binding region containing p | 2e-07 | |
| d2cpea1 | 101 | d.58.7.1 (A:353-453) RNA-binding protein EWS {Huma | 2e-07 | |
| d1u6fa1 | 139 | d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa | 2e-07 | |
| d1wi8a_ | 104 | d.58.7.1 (A:) Eukaryotic translation initiation fa | 2e-07 | |
| d1wf0a_ | 88 | d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 { | 3e-07 | |
| d2cqca1 | 83 | d.58.7.1 (A:109-191) Arginine/serine-rich splicing | 4e-07 | |
| d2cqga1 | 90 | d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD | 5e-07 | |
| d1fjeb1 | 91 | d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesoc | 6e-07 | |
| d2cqha1 | 80 | d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 is | 1e-06 | |
| d1l3ka2 | 79 | d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 | 1e-06 | |
| d2cqia1 | 90 | d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa | 1e-06 | |
| d2cpza1 | 102 | d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin | 1e-06 | |
| d2cpda1 | 86 | d.58.7.1 (A:223-308) APOBEC1 stimulating protein { | 2e-06 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | d.58.7.3 (A:) 2e-06 | ||
| d1x5sa1 | 90 | d.58.7.1 (A:8-97) Cold-inducible RNA-binding prote | 2e-06 | |
| d1fxla1 | 82 | d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom | 3e-06 | |
| d2cq3a1 | 93 | d.58.7.1 (A:110-202) RNA-binding protein 9 {Human | 4e-06 | |
| d1wg1a_ | 88 | d.58.7.1 (A:) Probable RNA-binding protein KIAA157 | 4e-06 | |
| d1wg4a_ | 98 | d.58.7.1 (A:) Splicing factor, arginine/serine-ric | 5e-06 | |
| d2cq0a1 | 90 | d.58.7.1 (A:231-320) Eukaryotic translation initia | 5e-06 | |
| d2cpia1 | 89 | d.58.7.1 (A:101-189) E3 ubiquitin protein ligase C | 1e-05 | |
| d2dita1 | 99 | d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Huma | 1e-05 | |
| d1rk8a_ | 88 | d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr | 2e-05 | |
| d2bz2a1 | 79 | d.58.7.1 (A:35-113) Negative elongation factor E, | 3e-05 | |
| d1nu4a_ | 91 | d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo | 3e-05 | |
| d2adba1 | 108 | d.58.7.1 (A:177-284) Polypyrimidine tract-binding | 3e-05 | |
| d1zh5a2 | 85 | d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo | 3e-05 | |
| d1weza_ | 102 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 4e-05 | |
| d2ghpa2 | 75 | d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicin | 4e-05 | |
| d1u1qa_ | 183 | d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1 | 5e-05 | |
| d1u1qa_ | 183 | d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1 | 7e-05 | |
| d1x4ha1 | 98 | d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse ( | 6e-05 | |
| d1p1ta_ | 104 | d.58.7.1 (A:) Cleavage stimulation factor, 64 kda | 7e-05 | |
| d1x4da1 | 89 | d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [ | 9e-05 | |
| d2cpxa1 | 102 | d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 | 2e-04 | |
| d1whya_ | 97 | d.58.7.1 (A:) Putative RNA-binding protein 15B, Rb | 3e-04 | |
| d1x4ea1 | 72 | d.58.7.1 (A:8-79) RNA-binding motif, single-strand | 6e-04 | |
| d2adca1 | 109 | d.58.7.1 (A:335-443) Polypyrimidine tract-binding | 0.001 | |
| d2cq1a1 | 88 | d.58.7.1 (A:51-138) Polypyrimidine tract-binding p | 0.001 | |
| d1wexa_ | 104 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 0.002 | |
| d2cpya1 | 103 | d.58.7.1 (A:536-638) RNA-binding protein 12 {Human | 0.002 | |
| d1wwha1 | 81 | d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus mu | 0.003 |
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.1 bits (161), Expect = 4e-14
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ KI V N+P + + E F FG +K V L K + GFGFV + K
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
A A+ +GR L ++
Sbjct: 66 KAFNAL-CHSTHLYGRRLVLEW 86
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.5 bits (149), Expect = 1e-12
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
GK+ V NL + + E F +FG +K + + V ++ A AM
Sbjct: 1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLG--TADVHFERKADALKAM 58
Query: 212 KAVEFDGVEFHGRVLTVKL 230
K +++GV GR + ++L
Sbjct: 59 K--QYNGVPLDGRPMNIQL 75
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (143), Expect = 2e-11
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
E ++ ++VGNL + + + E F + G IK +I + + GF FV Y
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKII-MGLDKMKKTACGFCFVEYYSR 59
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A ++AM+ +G R++ D G +
Sbjct: 60 ADAENAMRY--INGTRLDDRIIRTDWDAGFK 88
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.4 bits (141), Expect = 2e-11
Identities = 14/78 (17%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++VG+L + + ++ E F GPI ++ + + +++G+ +V + PA + A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYAYVNFQQPADAERALD 60
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ G+ + +
Sbjct: 61 --TMNFDVIKGKPVRIMW 76
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (143), Expect = 2e-11
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
S +S + ++F+GNL +KK V F ++G I + + GF
Sbjct: 2 SSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV---------HKGF 52
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
FV Y ++A+ DG G+VL + L ++
Sbjct: 53 AFVQYVNERNARAAVA--GEDGRMIAGQVLDINLAAEPKVNRSG 94
|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.7 bits (139), Expect = 3e-11
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+F+G L + + E+F QFG +K + + +++ GFGFV + A K
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECL-VMRDPLTKRSRGFGFVTFMDQA---GVDK 57
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ E + + K+
Sbjct: 58 VLAQSRHELDSKTIDPKV 75
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (141), Expect = 4e-11
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+++ NLP I + + F ++GPI+ + N + G +V+Y+ K+A
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIR----VGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
G R L V + R K + + +
Sbjct: 65 H--LSGFNVCNRYLVVLYYNANRAFQKMDTKKK 95
|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Non-POU domain-containing octamer-binding protein, NonO species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.7 bits (134), Expect = 2e-10
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
E F Q ++FVGNLP I + + + F ++G V K+ GFGF+ +
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-------FIHKDKGFGFIRLETR 54
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTVKL 230
+ A E D + G+ L V+
Sbjct: 55 TLAEIAKV--ELDNMPLRGKQLRVRF 78
|
| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (132), Expect = 3e-10
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG----YNNFEKNVGFGFVIYDGPAAEK 208
+++VGN+P I + +M+FF + + G ++ F F+ + +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFR---SVD 59
Query: 209 SAMKAVEFDGVEFHGRVLTVK 229
+A+ FDG+ F G+ L ++
Sbjct: 60 ETTQAMAFDGIIFQGQSLKIR 80
|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (131), Expect = 5e-10
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPI-KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++F+G +P K+ ++E + +VI+ + KN GF FV Y+ A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 212 KAVEFDGVEFHGRVLTVKL 230
+ + ++ G + V
Sbjct: 63 RKLMPGRIQLWGHQIAVDW 81
|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Neural RNA-binding protein Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.0 bits (129), Expect = 6e-10
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG L V +F QFG + + +L+ FGFV ++ K
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRG-FGFVTFESEDI---VEK 56
Query: 213 AVEFDGVEFHGRVLTVKL 230
E E + +++ K
Sbjct: 57 VCEIHFHEINNKMVECKK 74
|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein D0 (AUF1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (128), Expect = 8e-10
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG L + + E+F FG +++ I + N K GF F+ + E+ K
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVES-IELPMDNKTNKRRGFCFITFK---EEEPVKK 56
Query: 213 AVEFDGVEFHGRVLTVKL 230
+E +K+
Sbjct: 57 IMEKKYHNVGLSKCEIKV 74
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 53.8 bits (129), Expect = 9e-10
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++V NLP I + F ++G I +++ FV Y+ + A+
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG-VAFVRYNKREEAQEAIS 66
Query: 213 AVEFDGVEFHG--RVLTVKL 230
A + V G + L+V+L
Sbjct: 67 A--LNNVIPEGGSQPLSVRL 84
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (128), Expect = 1e-09
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+F+G L K + ++F +FG + + L FGFV++ +S K
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG-FGFVLFK---ESESVDK 56
Query: 213 AVEFDGVEFHGRVLTVK 229
++ + +G+V+ K
Sbjct: 57 VMDQKEHKLNGKVIDPK 73
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.5 bits (128), Expect = 1e-09
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKN--VILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+F+ NL + + F + G IK+ + K ++GFGFV Y P + A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 212 KAVEFDGVEFHGRVLTVKLDD 232
K + G G L V++ +
Sbjct: 61 K--QLQGHTVDGHKLEVRISE 79
|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 2e-09
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IF+GNL I + L+ + F FG I I + + G+ F+ + A +A++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE- 59
Query: 214 VEFDGVEFHGRVLTVKL 230
+G R +TV
Sbjct: 60 -AMNGQYLCNRPITVSY 75
|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA binding protein 23 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (126), Expect = 3e-09
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 133 RSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+SP + E R +F L I+ + +FF G +++V +I N+ +
Sbjct: 1 KSPVREPVDNLSPEE-RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR-R 58
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
+ G +V + S A+ G G + V+ +
Sbjct: 59 SKGIAYVEFCEIQ---SVPLAIGLTGQRLLGVPIIVQASQAEK 98
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 51.5 bits (123), Expect = 5e-09
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V LP + + FR GPI +++ Y E + +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTS----EMDSQR 59
Query: 213 AVE-FDGVEFHGRVLTVKL 230
A++ +G+ + L V
Sbjct: 60 AIKVLNGITVRNKRLKVSY 78
|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.9 bits (121), Expect = 8e-09
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
E +++ N P + + + + + I + + A
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 211 MKAVEFDGVEFHGRVLTVKLDD 232
+ +G++ G L K+ +
Sbjct: 61 E---KLNGLKIEGYTLVTKVSN 79
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (121), Expect = 8e-09
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++V LP + + + + F Q+G I I + G GF+ +D + A+K
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSR-ILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 213 AVEFDGVEFHGRVLTVKLD 231
+G + G + +
Sbjct: 67 --GLNGQKPSGATEPITVK 83
|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (122), Expect = 9e-09
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPA 205
+E Q+ ++VG L + + L+ E F Q GP+ N + K + +GFV +
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQG-YGFVEFLSEE 62
Query: 206 AEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A+K D ++ +G+ + V
Sbjct: 63 DADYAIKI--MDMIKLYGKPIRVNKASAHN 90
|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins A2/B1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (120), Expect = 2e-08
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 135 PSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV 194
++ +++ E Q K+F+G L + + ++ Q+G + + + + +++
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPASKRSR 62
Query: 195 GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
GFGFV + + A+ GRV+ K
Sbjct: 63 GFGFVTFS---SMAEVDAAMAARPHSIDGRVVEPK 94
|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (119), Expect = 2e-08
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ +I+VGNLP I+ + + F ++G I+++ L F FV ++ P +
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP----PFAFVEFEDPRDAE 67
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A+ DG ++ G L V+ R
Sbjct: 68 DAVY--GRDGYDYDGYRLRVEFPRSGR 92
|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 3e-08
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYD 202
+E + R K+F+G L + F Q+G + + + + N +++ GFGFV Y
Sbjct: 1 KEPEQLR---KLFIGGLSFETTDESLRSHFEQWGTLTDCV-VMRDPNTKRSRGFGFVTYA 56
Query: 203 GPAAEKSAMKAVEFDGVEFHGRVLTVK 229
A+ + GRV+ K
Sbjct: 57 TVE---EVDAAMNARPHKVDGRVVEPK 80
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 5e-08
Identities = 56/402 (13%), Positives = 120/402 (29%), Gaps = 23/402 (5%)
Query: 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395
L H D E A ++ + + + ++ + + + H+ A ++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 396 HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455
+ A Y N+ + ++ A R D ++ E
Sbjct: 63 NPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLING 515
L+ + S + + +KA + + + +S L
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCV 178
Query: 516 FLKLKDWANVFAVFEDVMRDGLKPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574
F + FE + L P+ + Y N+ DRA+
Sbjct: 179 FNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPN 235
Query: 575 TSRTFMPIIHGFARAGEMKRALEIFD-MMRRSGCIPTVHTFNALILGLVEKRQMEKAIEI 633
+ + + G + A++ + + P + L L EK + +A +
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY--CNLANALKEKGSVAEAEDC 293
Query: 634 LDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD---VFTYEALLKA 690
+ L + + + + G+ +A + K LE+ + L
Sbjct: 294 YNTA-LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA----LEVFPEFAAAHSNLASV 348
Query: 691 CCKSGRMQSALAVTKEMSAQKI-PRNTFVYNILIDGWARRGD 731
+ G++Q AL KE A +I P Y+ + + D
Sbjct: 349 LQQQGKLQEALMHYKE--AIRISPTFADAYSNMGNTLKEMQD 388
|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.6 bits (115), Expect = 6e-08
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 153 KIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+I + NL + ++L+ E F FG I+ + + G N F++++ SA
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD---SAE 62
Query: 212 KAVEFDGVEFHGRVLTVKL 230
+A++ + R ++V L
Sbjct: 63 RALQMNRSLLGNREISVSL 81
|
| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Score = 48.5 bits (115), Expect = 7e-08
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 8/100 (8%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG 195
S L + R + NL I + + E F I+ V G
Sbjct: 1 SHMLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK------G 54
Query: 196 FGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
++ + A + ++ E G E GR +++ +
Sbjct: 55 IAYIEFKSEADAEKNLE--EKQGAEIDGRSVSLYYTGEKG 92
|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.6 bits (115), Expect = 9e-08
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
G++FV NL + + + F +GP+ + + +K GF FV + P A
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELH-YPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
E DG F GR+L V ++ +++
Sbjct: 68 A--EVDGQVFQGRMLHVLPSTIKKEASQS 94
|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (114), Expect = 9e-08
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
G IF+ NL I + + F FG I + ++ N + F +++
Sbjct: 7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF------ETQEA 60
Query: 210 AMKAVE-FDGVEFHGRVLTVKLDDGRR 235
A +A+E +G+ + R + V R+
Sbjct: 61 AERAIEKMNGMLLNDRKVFVGRFKSRK 87
|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (114), Expect = 1e-07
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++ G + + + L+ + F FG I + + + FV + + A+
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-------YSFVRFSTHESAAHAIV 72
Query: 213 AVEFDGVEFHGRVLTV 228
+G G V+
Sbjct: 73 --SVNGTTIEGHVVKC 86
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (113), Expect = 1e-07
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+F+G LPN++ V E FGP+K L+K + G+ F Y A+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG-LSKGYAFCEYVDINVTDQAIA 61
Query: 213 AVEFDGVEFHGRVLTVKL 230
+G++ + L V+
Sbjct: 62 --GLNGMQLGDKKLLVQR 77
|
| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.7 bits (113), Expect = 1e-07
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
I V N+P + +++FF + I + +K YN G V ++ +A+
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK-YNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ + R + + L
Sbjct: 70 --DLNDRPIGSRKVKLVL 85
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (113), Expect = 1e-07
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++VG L + ++ F FG I ++ + Y K+ GF FV ++ +A+
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-KHRGFAFVEFELAEDAAAAID 65
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLK 237
+ E GR + V L R+K
Sbjct: 66 --NMNESELFGRTIRVNLAKPMRIK 88
|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding region containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (113), Expect = 2e-07
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 139 LATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGF 198
+ SQ++T F KIFVG LP + ++F FG I+ + + K+ G+GF
Sbjct: 1 MHGSQKDTTFT---KIFVGGLPYHTTDASLRKYFEGFGDIEEAV-VITDRQTGKSRGYGF 56
Query: 199 VIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
V A +A +A + GR V L
Sbjct: 57 VTMADRA---AAERACKDPNPIIDGRKANVNL 85
|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein EWS species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 2e-07
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYN-------NFEKNVGFGFV 199
E I+V L + + + +FF+Q G +K K G V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
Y+ P K+A++ FDG +F G L V L
Sbjct: 64 SYEDPPTAKAAVE--WFDGKDFQGSKLKVSL 92
|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein UBP1 species: Trypanosoma cruzi [TaxId: 5693]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 18/151 (11%)
Query: 102 PPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPN 161
P P QLQ+ Q Q IP + L + V +P
Sbjct: 5 PLVSQYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLR------------NLMVNYIPT 52
Query: 162 WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221
+ + + + F ++GPI++V ++ + G +A++ A+ +G
Sbjct: 53 TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ-AIA--GLNGFNI 109
Query: 222 HGRVLTVKLDDGRRLKNKAEVRARWVAGNNG 252
+ L V L + A V NG
Sbjct: 110 LNKRLKVALAASGHQRPG---IAGAVGDGNG 137
|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 4B species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (112), Expect = 2e-07
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
F+GNLP + + + EFFR + + N D S +
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED----LDSLLS 72
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
A+ + + + V + D + K+
Sbjct: 73 ALSLNEESLGNKRIRVDVADQAQDKDSG 100
|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (110), Expect = 3e-07
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FVG + + + EFF Q+G + +V + F FV + +S
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVF------IPKPFRAFAFVTFADDQIAQSLCG 60
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNK 239
+ + G + + + + N
Sbjct: 61 ----EDLIIKGISVHISNAEPKHNSNS 83
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (109), Expect = 4e-07
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V L + + + E F ++GPI +V ++ + F FV ++ K A +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRG-FAFVYFENVDDAKEAKE 69
Query: 213 AVEFDGVEFHGRVLTV 228
+G+E GR + V
Sbjct: 70 --RANGMELDGRRIRV 83
|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (109), Expect = 5e-07
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
+ ++ + V LP + + E+F FG + V + K + GFGFV +
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG-HSKGFGFVRFTEY 60
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKN 238
+ M GR KL + ++ ++
Sbjct: 61 ETQVKVMSQRH----MIDGRWCDCKLPNSKQSQD 90
|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Score = 46.1 bits (108), Expect = 6e-07
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
+ E +E +F+GNL + + ++ ++ + G+
Sbjct: 2 SHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDF 61
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234
+ KA+E G++ G + ++ GR
Sbjct: 62 ES-----AEDLEKALELTGLKVFGNEIKLEKPKGR 91
|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: IGF-II mRNA-binding protein 2 isoform A species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+++GNL + + + F ++ G+ FV Y A++
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS-------GYAFVDYPDQNWAIRAIE 55
Query: 213 AVEFDG-VEFHGRVLTVKLDDGRRLKN 238
G VE HG+++ V ++L++
Sbjct: 56 --TLSGKVELHGKIMEVDYSVSKKLRS 80
|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (105), Expect = 1e-06
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG + ++H + ++F Q+G I+ + ++ + +K F FV +D + K
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG-FAFVTFDDHDSV---DK 59
Query: 213 AVEFDGVEFHGRVLTVK 229
V +G V+
Sbjct: 60 IVIQKYHTVNGHNCEVR 76
|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (105), Expect = 1e-06
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
Q ++VGNL + + L+++ F Q GP K+ N + FV +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCK---MITEHTSNDPYCFVEFYEHRDAA 62
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
+A+ A +G + G+ + V
Sbjct: 63 AALAA--MNGRKILGKEVKVNW 82
|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CUG triplet repeat RNA-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
S+ + + E + +F+ +LP +++ F FG + + + + F
Sbjct: 4 QSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK-VFIDKQTNLSKCF 62
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
GFV YD P + ++A++ +G + + L V+L +
Sbjct: 63 GFVSYDNPVSAQAAIQ--SMNGFQIGMKRLKVQLKRSKN 99
|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: APOBEC1 stimulating protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (104), Expect = 2e-06
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 9/87 (10%)
Query: 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG 203
+E ++V NL + ++ + F P +K + FV +
Sbjct: 1 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA-------VERVKKIRDYAFVHFSN 53
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVKL 230
AMK +G G + V L
Sbjct: 54 REDAVEAMK--ALNGKVLDGSPIEVTL 78
|
| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Splicing factor U2AF subunits domain: U2AF35 (35 KDa subunit) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (106), Expect = 2e-06
Identities = 7/78 (8%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ + + + + E ++G ++ + + + +V + + A+
Sbjct: 29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVG--NVYVKFRREEDAEKAVI 86
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ F+G+ + +L
Sbjct: 87 D--LNNRWFNGQPIHAEL 102
|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cold-inducible RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 2e-06
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
EGK+FVG L + + + F ++G I V+++K GFGFV ++ K A
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSR-GFGFVTFENIDDAKDA 63
Query: 211 MKAVEFDGVEFHGRVLTVKL 230
M +G GR + V
Sbjct: 64 MM--AMNGKSVDGRQIRVDQ 81
|
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 3e-06
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V LP + + F G I++ L++ + +GFV Y P + A+
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG-YGFVNYIDPKDAEKAIN 62
Query: 213 AVEFDGVEFHGRVLTVKL 230
+G+ + + V
Sbjct: 63 T--LNGLRLQTKTIKVSY 78
|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (103), Expect = 4e-06
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 141 TSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVI 200
+S ++ V N+P + + + F QFG I +V +I + F
Sbjct: 1 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE- 59
Query: 201 YDGPAAEKSAMKAVE-FDGVEFHGRVLTVKLDDGRRLKN 238
A +A E G GR + V R + N
Sbjct: 60 -----NSADADRAREKLHGTVVEGRKIEVNNATARVMTN 93
|
| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein KIAA1579 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 4e-06
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
I V NLP V + + + Y ++N FV ++A++
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLK--------YCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 213 AVEFDGVEFHGRVLTVKL 230
F F G+ L V+L
Sbjct: 59 --MFHQYSFRGKDLIVQL 74
|
| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 9 (SFRS9) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.6 bits (102), Expect = 5e-06
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 10/95 (10%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
R + ++ V LP + + R+ G + + G G V Y +
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDV--------CYADVQKDGMGMVEYLRKEDME 64
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVR 243
A++ + D +F ++
Sbjct: 65 YALR--KLDDTKFRSHEGETSYIRVYPERSSGPSS 97
|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 3 subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (102), Expect = 5e-06
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
I V NL ++ + E FR FG I + L K + + + A
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR----REDA 63
Query: 211 MKAVE-FDGVEFHGRVLTVKL 230
+A+ G + +L V+
Sbjct: 64 ARAIAGVSGFGYDHLILNVEW 84
|
| >d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: E3 ubiquitin protein ligase CNOT4 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.1 bits (98), Expect = 1e-05
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 150 QEGKIFVGNLPNWIKK---HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAA 206
Q+ +FV L + E+F +FG I V++ ++ + G Y
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINN-STSYAGSQGPSASAYVTYIR 65
Query: 207 EKSAMKAVE-FDGVEFHGRVLTV 228
+ A++A++ + V GR L
Sbjct: 66 SEDALRAIQCVNNVVVDGRTLKA 88
|
| >d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: HIV Tat-specific factor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (99), Expect = 1e-05
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226
+ + + + + ++ G V + P ++ DG F GR +
Sbjct: 32 IREDLRVECSKFGQIRKLLLFDRHPD--GVASVSFRDPEEADYCIQ--TLDGRWFGGRQI 87
Query: 227 TVKLDDGR 234
T + DG
Sbjct: 88 TAQAWDGT 95
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 42.0 bits (98), Expect = 2e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV ++ ++ + E F +G IKN+ L K A+ A
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET----HKQALAA 65
Query: 214 VE-FDGVEFHGRVLTVK 229
E +G E G+ + V
Sbjct: 66 KEALNGAEIMGQTIQVD 82
|
| >d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Negative elongation factor E, NELF-E species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (95), Expect = 3e-05
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
R+ ++V + L+ F FG I ++ + + FV Y+ +
Sbjct: 3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDL-------SMDPPRNCAFVTYEKMESAD 53
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
A+ E +G + L V +
Sbjct: 54 QAVA--ELNGTQVESVQLKVNI 73
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 3e-05
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 153 KIFVGNLPNWIK----KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
I++ NL IK K + F +FG I ++++ + K G FVI+ ++
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV----SRSLKMRGQAFVIFKEVSSAT 60
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
+A+++ G F+ + + ++ K +++ A+
Sbjct: 61 NALRS--MQGFPFYDKPMRIQYA-----KTDSDIIAK 90
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (97), Expect = 3e-05
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+I V NL + ++ + F +FG + +I + N + Y P + + A
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-----TKNNQFQALLQYADPVSAQHAKL 63
Query: 213 AVEFDGVEFHGRVLTVKLD 231
DG + T+++D
Sbjct: 64 --SLDGQNIYNACCTLRID 80
|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 3e-05
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ +++ P + E+ G + N+ + + + G FV++D
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA--FKGSIFVVFDSIE--- 58
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDD 232
SA K VE G ++ L + D
Sbjct: 59 SAKKFVETPGQKYKETDLLILFKD 82
|
| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 4e-05
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN 193
S SS ++ Q T + + LP ++ + FF P++ I I
Sbjct: 2 SSGSSGSSFQSTTGH----CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGE 57
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
F A + A+ A+ D R + + L+
Sbjct: 58 ADVEF------ATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGSG 98
|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (93), Expect = 4e-05
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V NLP ++ V ++F+ GPI +V + A+
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD-SLKKNFRFARIEFAR-----YDGALA 55
Query: 213 AVEFDGVEFHGRVLTVK 229
A+ + V
Sbjct: 56 AITKTHKVVGQNEIIVS 72
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 5e-05
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYD 202
+E + R K+F+G L + F Q+G + + ++++ N GFGFV Y
Sbjct: 1 KEPEQLR---KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR-GFGFVTYA 56
Query: 203 GPAAEKSAMKA 213
+AM A
Sbjct: 57 TVEEVDAAMNA 67
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 7e-05
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAA 206
KIFVG + ++H + ++F Q+G I+ + ++ K GF FV +D
Sbjct: 93 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT-DRGSGKKRGFAFVTFDDHD- 150
Query: 207 EKSAMKAVEFDGVEFHGRVLTVKL 230
S K V +G V+
Sbjct: 151 --SVDKIVIQKYHTVNGHNCEVRK 172
|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 28 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.6 bits (94), Expect = 6e-05
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPA 205
++ + +F+ NL ++ + E +QFG +K V + + + E + G F +
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVR-VVLHPDTEHSKGCAFAQFMTQE 61
Query: 206 AEKSAMKA----VEFDGVEFHGRVLTVKL 230
A + + A E G++ GR L V L
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDL 90
|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cleavage stimulation factor, 64 kda subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 7e-05
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
R +FVGN+P + + + F + GP+ + + K G+GF Y
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFR-LVYDRETGKPKGYGFCEYQDQETAL 64
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
SAM+ +G EF GR L V KNK E+++
Sbjct: 65 SAMR--NLNGREFSGRALRVDNAASE--KNKEELKSL 97
|
| >d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.7 bits (92), Expect = 9e-05
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 154 IFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ + + ++ +++ FG I N +++ N F+ ++A+
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN-------EAFIEMATTEDAQAAVD 63
Query: 213 AVEFDGVEFHGRVLTVKL 230
G+ + V L
Sbjct: 64 YYTTTPALVFGKPVRVHL 81
|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 41, RBM41 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 11/85 (12%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+++ NL + + ++ F +F K + + G F+ + A+
Sbjct: 20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTG-RMRGQAFITFPNKEIAWQALH 78
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLK 237
+G + +G++L ++ ++ +
Sbjct: 79 --LVNGYKLYGKILVIEFGKNKKQR 101
|
| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Putative RNA-binding protein 15B, Rbm15b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.5 bits (89), Expect = 3e-04
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+++VG L + F +FG I+ + + K F ++ Y+ A ++A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTI-------DHVKGDSFAYIQYESLDAAQAACA 71
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
+ G G +++D + +
Sbjct: 72 --KMRGFPLGGPDRRLRVDFAKSGPSSG 97
|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 6e-04
Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+++ L +++ + +G I + I + +A KA
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS----PSAAQKA 56
Query: 214 VE-FDGVEFHGRVL 226
V ++
Sbjct: 57 VTALKASGVQAQMA 70
|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 153 KIFVGNL-PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+ V NL P + + F +G ++ V ++ V + AM
Sbjct: 4 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN------ALVQMADGNQAQLAM 57
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
+G + HG+ + + L + ++ E
Sbjct: 58 SH--LNGHKLHGKPIRITLSKHQNVQLPRE 85
|
| >d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein 2, PTBP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ + LP + + V+ FG + K F+ A + +
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVT-------NILMLKGKNQAFLELATEEAAITMVN 62
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLK 237
+ + ++ + + LK
Sbjct: 63 YYSAVTPHLRNQPIYIQYSNHKELK 87
|
| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein L-like species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.7 bits (84), Expect = 0.002
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ V L + + ++E +FG I V+++ V ++ + K +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR-------QALVEFENIDSAKECVTF 70
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
V G+ +R+
Sbjct: 71 AADVPVYIAGQQAFFNYSTSKRITRPGN 98
|
| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ N+P I K V++F +N + + +N + +G V + A K
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVL-VDNNGQGLGQALVQFKNED---DARK 65
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ + +GR V +
Sbjct: 66 SERLHRKKLNGREAFVHV 83
|
| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleoporin 35 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.3 bits (81), Expect = 0.003
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
+ + V P + ++ F Q+G I + + Y A
Sbjct: 4 DTWVTVFGFPQASASY-ILLQFAQYGNILKH-------VMSNTGNWMHIRYQSKL---QA 52
Query: 211 MKAVEFDGVEFHGRVL 226
KA+ DG F ++
Sbjct: 53 RKALSKDGRIFGESIM 68
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 779 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1h2vz_ | 93 | CBP20, 20KDa nuclear cap-binding protein {Human (H | 99.84 | |
| d2cqba1 | 89 | Peptidyl-prolyl cis-trans isomerase E, N-terminal | 99.84 | |
| d1b7fa1 | 82 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.84 | |
| d1rk8a_ | 88 | RNA-binding protein 8 {Fruit fly (Drosophila melan | 99.83 | |
| d1cvja1 | 80 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.83 | |
| d1uawa_ | 77 | Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | 99.83 | |
| d1x5ua1 | 93 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.83 | |
| d2cpza1 | 102 | CUG triplet repeat RNA-binding protein 1 {Human (H | 99.83 | |
| d2u2fa_ | 85 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.82 | |
| d2cq0a1 | 90 | Eukaryotic translation initiation factor 3 subunit | 99.82 | |
| d1fxla1 | 82 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.82 | |
| d2cq4a1 | 101 | RNA binding protein 23 {Human (Homo sapiens) [TaxI | 99.82 | |
| d1no8a_ | 78 | Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 | 99.82 | |
| d1fxla2 | 85 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.81 | |
| d1whwa_ | 99 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.81 | |
| d2cqga1 | 90 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.81 | |
| d1u6fa1 | 139 | RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId | 99.81 | |
| d2ghpa1 | 81 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.81 | |
| d1l3ka1 | 84 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.8 | |
| d2cqca1 | 83 | Arginine/serine-rich splicing factor 10 {Human (Ho | 99.8 | |
| d1hd0a_ | 75 | Heterogeneous nuclear ribonucleoprotein d0 {Human | 99.8 | |
| d2ghpa3 | 86 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.8 | |
| d1x4ba1 | 103 | Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu | 99.8 | |
| d1x5sa1 | 90 | Cold-inducible RNA-binding protein {Human (Homo sa | 99.8 | |
| d1b7fa2 | 85 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.8 | |
| d1x0fa1 | 75 | Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s | 99.79 | |
| d2cpha1 | 94 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.79 | |
| d1x5ta1 | 83 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.79 | |
| d1p1ta_ | 104 | Cleavage stimulation factor, 64 kda subunit {Human | 99.78 | |
| d2cqia1 | 90 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.78 | |
| d2cqda1 | 103 | RNA-binding region containing protein 1 {Human (Ho | 99.78 | |
| d2cpfa1 | 85 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.78 | |
| d2cq3a1 | 93 | RNA-binding protein 9 {Human (Homo sapiens) [TaxId | 99.78 | |
| d1cvja2 | 89 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.78 | |
| d1l3ka2 | 79 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.77 | |
| d1x4ha1 | 98 | RNA-binding protein 28 {Mouse (Mus musculus) [TaxI | 99.77 | |
| d2msta_ | 75 | Neural RNA-binding protein Musashi-1 {Mouse (Mus m | 99.76 | |
| d2disa1 | 96 | Hypothetical protein FLJ20273 {Human (Homo sapiens | 99.76 | |
| d1x4ga1 | 96 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.76 | |
| d2cpja1 | 86 | Non-POU domain-containing octamer-binding protein, | 99.76 | |
| d1x4aa1 | 95 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.75 | |
| d2cpea1 | 101 | RNA-binding protein EWS {Human (Homo sapiens) [Tax | 99.74 | |
| d1fjeb1 | 91 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.74 | |
| d2f9da1 | 114 | Pre-mRNA branch site protein p14 {Human (Homo sapi | 99.74 | |
| d2cpxa1 | 102 | RNA-binding protein 41, RBM41 {Human (Homo sapiens | 99.73 | |
| d2cpia1 | 89 | E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc | 99.73 | |
| d1zh5a2 | 85 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.73 | |
| d2cqha1 | 80 | IGF-II mRNA-binding protein 2 isoform A {Human (Ho | 99.72 | |
| d1x5oa1 | 101 | RNA-binding motif, single-stranded-interacting pro | 99.72 | |
| d1x4ea1 | 72 | RNA-binding motif, single-stranded-interacting pro | 99.72 | |
| d2bz2a1 | 79 | Negative elongation factor E, NELF-E {Human (Homo | 99.72 | |
| d1wi8a_ | 104 | Eukaryotic translation initiation factor 4B {Human | 99.72 | |
| d1nu4a_ | 91 | Splicesomal U1A protein {Human (Homo sapiens) [Tax | 99.71 | |
| d2b0ga1 | 83 | Splicesomal U1A protein {Drosophila melanogaster [ | 99.71 | |
| d1fjca_ | 96 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.71 | |
| d2cpda1 | 86 | APOBEC1 stimulating protein {Human (Homo sapiens) | 99.71 | |
| d2adca2 | 88 | Polypyrimidine tract-binding protein {Human (Homo | 99.69 | |
| d2cq1a1 | 88 | Polypyrimidine tract-binding protein 2, PTBP2 {Hum | 99.69 | |
| d1wi6a1 | 75 | Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M | 99.69 | |
| d1wf2a_ | 98 | Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu | 99.69 | |
| d2ghpa2 | 75 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.68 | |
| d1wg1a_ | 88 | Probable RNA-binding protein KIAA1579 {Human (Homo | 99.68 | |
| d3begb1 | 87 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.68 | |
| d1whxa_ | 111 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.67 | |
| d2cqpa1 | 86 | RNA-binding protein 12 {Mouse (Mus musculus) [TaxI | 99.67 | |
| d2adca1 | 109 | Polypyrimidine tract-binding protein {Human (Homo | 99.66 | |
| d1whya_ | 97 | Putative RNA-binding protein 15B, Rbm15b {Mouse (M | 99.66 | |
| d1wg5a_ | 104 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.66 | |
| d1x4fa1 | 99 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.65 | |
| d1wf0a_ | 88 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.65 | |
| d1wg4a_ | 98 | Splicing factor, arginine/serine-rich 9 (SFRS9) {M | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d2cpya1 | 103 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.64 | |
| d1wexa_ | 104 | Heterogeneous nuclear ribonucleoprotein L-like {Mo | 99.64 | |
| d1x4da1 | 89 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.63 | |
| d1weza_ | 102 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1wela1 | 112 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.62 | |
| d2adba1 | 108 | Polypyrimidine tract-binding protein {Human (Homo | 99.62 | |
| d1weya_ | 104 | Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 | 99.6 | |
| d1u2fa_ | 90 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.57 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | U2 | 99.55 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.53 | |
| d1owxa_ | 113 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.46 | |
| d2cq2a1 | 101 | Alkylation repair AlkB homolog 8, ALKBH8 {Human (H | 99.45 | |
| d1wwha1 | 81 | Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090 | 99.42 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.38 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d2dita1 | 99 | HIV Tat-specific factor 1 {Human (Homo sapiens) [T | 99.37 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.3 | |
| d1o0pa_ | 104 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.73 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.67 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.62 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.62 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.46 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.35 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.03 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.01 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.99 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.95 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.77 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.66 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.47 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.46 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.3 | |
| d2dgxa1 | 73 | Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960 | 97.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.08 | |
| d1ufwa_ | 95 | Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606] | 97.06 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.86 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.83 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.19 | |
| d1uw4a_ | 91 | RNA processing protein UPF3x, RRM domain {Human (H | 96.12 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.45 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.22 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.76 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.32 | |
| d1whva_ | 100 | Poly(A)-specific ribonuclease PARN {Mouse (Mus mus | 91.12 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.7 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.3 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.77 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9.2e-23 Score=212.41 Aligned_cols=148 Identities=13% Similarity=0.131 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004006 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (779)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (779)
.+..+...+.+.|++++|+..|+++++.. +-+...|..+..+|...|++++|+..++.+.... +.+...+..+..++.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 33333344444444444444444443332 2223344444444444444444444444444332 234444444444444
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 004006 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSFINACKCSK 765 (779)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l~~a~~~~g 765 (779)
..|++++|...+++..+.. +.+...+..++.+|.+.|++++|++.|+++++ +.|+ ...|..++.++.+.|
T Consensus 317 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 4444444444444444332 33344444444445555555555555544443 2332 334444444444444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.1e-22 Score=211.91 Aligned_cols=384 Identities=14% Similarity=0.046 Sum_probs=327.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (779)
+...+.+.|++++|+++|+++++... -+...+..++.+|.+.|++++|+..|+++.+..+. +..+|..++.+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 55678889999999999999998743 36889999999999999999999999999998655 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (779)
+++|++.+..+.+.. ......+..........+....+............. ...............+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 999999999999875 445555666666666777776666666665554332 455566677778888999999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc
Q 004006 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS 576 (779)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 576 (779)
..... .-+...+..+...+...+++++|...+++..+.... +...|..+...+...|++++|+..+++....... +.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 87754 336778888899999999999999999999886544 6788999999999999999999999999887655 66
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 577 RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY 656 (779)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 656 (779)
..+..+...+.+.|++++|+..|+++.+.... +...|..+...+...|++++|+..++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 77888889999999999999999999987654 68889999999999999999999999988764 56778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004006 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (779)
Q Consensus 657 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (779)
...|++++|+..|+++++.. +.+..++..++.+|...|++++|...++++.+.+ +.+...|..|+.+|.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999875 4578889999999999999999999999999875 5678899999999998886
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.1e-21 Score=151.31 Aligned_cols=86 Identities=26% Similarity=0.480 Sum_probs=81.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+++|||||||+++|+++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|..|++.| ||..++|++|+|
T Consensus 5 ~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~gr~i~V 81 (93)
T d1h2vz_ 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD-KMKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRT 81 (93)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccc-cccccccceEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 45679999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred EecCCcchh
Q 004006 229 KLDDGRRLK 237 (779)
Q Consensus 229 ~~~~~~~~~ 237 (779)
+|+.+...+
T Consensus 82 ~~a~~~~~g 90 (93)
T d1h2vz_ 82 DWDAGFKEG 90 (93)
T ss_dssp EEESCCCTT
T ss_pred EEcCCCCCC
Confidence 999776543
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.9e-21 Score=149.62 Aligned_cols=82 Identities=24% Similarity=0.458 Sum_probs=78.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.+ ||..++|++|+|++|
T Consensus 6 ~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~~~~~kg~afV~f~~~~~A~~ai~~l--~~~~i~g~~l~v~~a 82 (89)
T d2cqba1 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVNLA 82 (89)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC-SSSCCCSSEEEECCSSHHHHHHHHHHH--TTEEETTEEEEEEEC
T ss_pred cEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccc-cccccccceeEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEe
Confidence 59999999999999999999999999999999999 889999999999999999999999999 999999999999999
Q ss_pred CCcch
Q 004006 232 DGRRL 236 (779)
Q Consensus 232 ~~~~~ 236 (779)
++++.
T Consensus 83 ~p~~~ 87 (89)
T d2cqba1 83 KPMRI 87 (89)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87753
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.84 E-value=4e-21 Score=147.56 Aligned_cols=79 Identities=20% Similarity=0.434 Sum_probs=76.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||.++|+++|+++|++||.|.+++|++| +.+|+++|||||+|.+.++|++|++.| ||..++|++|+|++|
T Consensus 3 t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~ai~~l--ng~~~~g~~l~v~~a 79 (82)
T d1b7fa1 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD-YKTGYSYGYAFVDFTSEMDSQRAIKVL--NGITVRNKRLKVSYA 79 (82)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeee-cccCCccccceEEECCHHHHHHHHHHh--CCCEECCEEEEEEEc
Confidence 58999999999999999999999999999999999 889999999999999999999999999 999999999999999
Q ss_pred CC
Q 004006 232 DG 233 (779)
Q Consensus 232 ~~ 233 (779)
++
T Consensus 80 ~p 81 (82)
T d1b7fa1 80 RP 81 (82)
T ss_dssp CC
T ss_pred CC
Confidence 76
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.83 E-value=5e-21 Score=148.46 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=78.0
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++++|||+|||.++|+++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|++|+..| ||..++|+.|+|+
T Consensus 6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d-~~tg~~~g~afV~f~~~~~A~~A~~~l--ng~~l~g~~l~V~ 82 (88)
T d1rk8a_ 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 82 (88)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccccccccc-ccccccccceeEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4569999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
||.++
T Consensus 83 ~a~~k 87 (88)
T d1rk8a_ 83 WCFVK 87 (88)
T ss_dssp ESEEC
T ss_pred EecCC
Confidence 99765
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.5e-21 Score=145.82 Aligned_cols=77 Identities=18% Similarity=0.418 Sum_probs=75.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+|||||||+++|+++|+++|++||.|.+|+|++| +.||+++|||||+|.+.++|..|++.| ||..++||+|+|++++
T Consensus 2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~~g~aFV~f~~~~~a~~ai~~l--~g~~~~gr~i~v~~a~ 78 (80)
T d1cvja1 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVRIMWSQ 78 (80)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHTTS--TTCEETTEECEEEECC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEec-ccccCCCCceEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEeC
Confidence 7999999999999999999999999999999999 899999999999999999999999999 9999999999999984
|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=3e-21 Score=144.67 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=73.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
|+|||||||+++|+++|+++|++||.|.+++|++| +.||++||||||+|.+.++|++|++ + ||+.++||.|+|..|
T Consensus 1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~kG~aFV~f~~~~~a~~al~-~--~~~~i~Gr~i~V~~A 76 (77)
T d1uawa_ 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLA-Q--SRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC-CCSSSCSSEEEECCCCTTHHHHHHH-T--TTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecc-cCCCCccceEEEEECCHHHHHHHHH-c--CCCEECCeEEEEEEC
Confidence 78999999999999999999999999999999999 9999999999999999999999996 6 999999999999876
|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=6.5e-21 Score=149.42 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=78.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||.++|+++|+++|++||.|.+++|++| +.||+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 9 ~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d-~~tg~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 85 (93)
T d1x5ua1 9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD-RVTGQHQGYGFVEFLSEEDADYAIKIM--DMIKLYGKPIRVNK 85 (93)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCSBCSCEEEEESSHHHHHHHHHHS--SSCBCSSCBCEEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeec-ccccccccceEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 469999999999999999999999999999999999 899999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
|+++.
T Consensus 86 A~~~~ 90 (93)
T d1x5ua1 86 ASAHN 90 (93)
T ss_dssp TTTTS
T ss_pred cCCCC
Confidence 98764
|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CUG triplet repeat RNA-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1e-20 Score=151.17 Aligned_cols=83 Identities=22% Similarity=0.458 Sum_probs=79.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|..|++.| ||..|+|++|+|++
T Consensus 18 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~-~~~g~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~g~~i~V~~ 94 (102)
T d2cpza1 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID-KQTNLSKCFGFVSYDNPVSAQAAIQSM--NGFQIGMKRLKVQL 94 (102)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhccccccceeee-cccCCCccceEEEeCCHHHHHHHHHHh--CCCEECCEEEEEEE
Confidence 458999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
++++..
T Consensus 95 a~~k~~ 100 (102)
T d2cpza1 95 KRSKND 100 (102)
T ss_dssp CCCSCC
T ss_pred eCCCCC
Confidence 988753
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=8.3e-21 Score=145.92 Aligned_cols=81 Identities=26% Similarity=0.509 Sum_probs=77.8
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||||||+++|+++|+++|++||.|.+++|++| +.||+++|||||+|.+.++|..|++.+ ||..|+|++|+|++|
T Consensus 2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d-~~tg~~rg~aFV~f~~~~~A~~a~~~l--~~~~l~g~~l~V~~A 78 (85)
T d2u2fa_ 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQRA 78 (85)
T ss_dssp CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECC-CSSSCCCCEEEEEESSSHHHHHHHHTS--SSCCCSSSCCEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCccceEEeecc-ccccccceeEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEC
Confidence 38999999999999999999999999999999999 999999999999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
++..
T Consensus 79 ~~~~ 82 (85)
T d2u2fa_ 79 SVGA 82 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7664
|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 3 subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=8.6e-21 Score=148.04 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=79.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||+|||..+++++|+++|++||.|.+++|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d-~~t~~~rg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~i~v~ 83 (90)
T d2cq0a1 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD-KTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNVE 83 (90)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccccccccc-ccccccccceeEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+|+++.
T Consensus 84 ~akp~~ 89 (90)
T d2cq0a1 84 WAKPST 89 (90)
T ss_dssp ESSCCC
T ss_pred eeeCCC
Confidence 998873
|
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2e-20 Score=143.72 Aligned_cols=79 Identities=20% Similarity=0.463 Sum_probs=76.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||||||.++++++|+++|++||.|.++++++| ..+|+++|||||+|.+.++|++|++.| ||..++|++|+|++|
T Consensus 3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~A 79 (82)
T d1fxla1 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTL--NGLRLQTKTIKVSYA 79 (82)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCcccccceee-ccCCCceeeEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEe
Confidence 47999999999999999999999999999999999 888999999999999999999999999 999999999999999
Q ss_pred CC
Q 004006 232 DG 233 (779)
Q Consensus 232 ~~ 233 (779)
+|
T Consensus 80 kP 81 (82)
T d1fxla1 80 RP 81 (82)
T ss_dssp CC
T ss_pred eC
Confidence 76
|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA binding protein 23 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.2e-20 Score=149.64 Aligned_cols=79 Identities=19% Similarity=0.357 Sum_probs=75.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++|+++|+++|+.||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++ | ||..|+|+.|+|.++
T Consensus 19 ~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d-~~tg~~kG~afV~F~~~e~a~~A~~-l--~g~~~~G~~l~V~~a 94 (101)
T d2cq4a1 19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD-RNSRRSKGIAYVEFCEIQSVPLAIG-L--TGQRLLGVPIIVQAS 94 (101)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS-CCSSSCCCCEEEEESCGGGHHHHHH-H--TTEEETTEEEEEEEH
T ss_pred CEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeec-CCCccccceEEEEECCHHHHHHHHH-H--CCCEECCEEEEEEEC
Confidence 48999999999999999999999999999999999 8999999999999999999999995 8 999999999999998
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
+++
T Consensus 95 ~~~ 97 (101)
T d2cq4a1 95 QAE 97 (101)
T ss_dssp HHH
T ss_pred CCC
Confidence 554
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=2.5e-20 Score=140.64 Aligned_cols=78 Identities=27% Similarity=0.437 Sum_probs=74.1
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||+|||+++++++|+++|++||.|.+++|..| + +|+++|||||+|.+.++|.+|++.+ ||..++|++|+|+++
T Consensus 1 grl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~l~g~~l~V~~a 76 (78)
T d1no8a_ 1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-R-SGRSLGTADVHFERKADALKAMKQY--NGVPLDGRPMNIQLV 76 (78)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCS-S-CCCSCCEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe-e-ccccceeEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEe
Confidence 47999999999999999999999999999999987 4 7999999999999999999999999 999999999999998
Q ss_pred CC
Q 004006 232 DG 233 (779)
Q Consensus 232 ~~ 233 (779)
.+
T Consensus 77 ~S 78 (78)
T d1no8a_ 77 TS 78 (78)
T ss_dssp CC
T ss_pred eC
Confidence 53
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.6e-20 Score=143.31 Aligned_cols=78 Identities=23% Similarity=0.469 Sum_probs=73.9
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec--eEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v 228 (779)
+++|||||||+++|+++|+++|++||.|.+++|++| +.+|+++|||||+|.+.++|.+|++.| ||..++| ++|+|
T Consensus 6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d-~~~g~~kg~afV~f~~~~~a~~Ai~~l--ng~~~~G~~~~i~V 82 (85)
T d1fxla2 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPITV 82 (85)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccc-cccccCCCeeEEEEcCHHHHHHHHHHh--CCCEeCCCCEEEEE
Confidence 458999999999999999999999999999999999 889999999999999999999999999 9999987 56999
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
.||
T Consensus 83 ~~A 85 (85)
T d1fxla2 83 KFA 85 (85)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=3.2e-20 Score=147.91 Aligned_cols=82 Identities=28% Similarity=0.450 Sum_probs=78.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++++++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..|+||.|+|.+
T Consensus 8 ~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d-~~tg~~~g~afV~f~~~~~a~~A~~~l--~g~~~~gr~i~V~~ 84 (99)
T d1whwa_ 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID-SLTKKPKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRMLHVLP 84 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC-TTTCCCCSEEEEEESSHHHHHHHHHHT--TTEESSSCEEEEEE
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCceeeeeccc-ccccccCcceEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 358999999999999999999999999999999999 899999999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++.+.
T Consensus 85 a~~~~ 89 (99)
T d1whwa_ 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98764
|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=5.2e-20 Score=142.46 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=74.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+.+|||||||+++|+++|+++|++||.|.+|+|++| +.||++||||||+|.+.++|.+|++ ++..|+||.|.|.
T Consensus 7 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~srG~aFV~f~~~~~a~~al~----~~~~l~Gr~i~v~ 81 (90)
T d2cqga1 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD-LKTGHSKGFGFVRFTEYETQVKVMS----QRHMIDGRWCDCK 81 (90)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHH----SCEEETTEEEEEE
T ss_pred CCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccC-CCCcccCCEEEEEECCHHHHHHHHh----cCCccCCEEeEEE
Confidence 3459999999999999999999999999999999999 8899999999999999999999996 4568999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.++.
T Consensus 82 ~a~~k~ 87 (90)
T d2cqga1 82 LPNSKQ 87 (90)
T ss_dssp CCCTTC
T ss_pred eCCCCC
Confidence 997763
|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein UBP1 species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.81 E-value=1.2e-19 Score=155.30 Aligned_cols=81 Identities=20% Similarity=0.496 Sum_probs=77.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++|+++|+++|++||.|.+|+|++| +.||+++|||||+|.+.++|.+|++.| ||..|+||.|+|+++
T Consensus 43 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~t~~~rg~afV~f~~~~~A~~Ai~~l--ng~~~~gr~l~V~~a 119 (139)
T d1u6fa1 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD-RETRQSRGYGFVKFQSGSSAQQAIAGL--NGFNILNKRLKVALA 119 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEE-TTTTEEEEEEEEEESSHHHHHHHHHHT--TTEECSSCEEEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhccccccccccc-cccccccceeeEEECCHHHHHHHHHHh--CCCEECCEEEEEEEc
Confidence 48999999999999999999999999999999999 899999999999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
+.+.
T Consensus 120 ~~~~ 123 (139)
T d1u6fa1 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7664
|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=3e-20 Score=142.10 Aligned_cols=79 Identities=11% Similarity=0.309 Sum_probs=69.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
|+|||+|||+++|+++|+++|++||.|..+.++.+ +.+|+++|||||+|.+.++|++|++.| ||..++|++|+|+++
T Consensus 2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afV~f~~~e~A~~Ai~~l--~g~~~~g~~i~V~~a 78 (81)
T d2ghpa1 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS-LRFNTSRRFAYIDVTSKEDARYCVEKL--NGLKIEGYTLVTKVS 78 (81)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred cEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecc-cccccccceeEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEc
Confidence 79999999999999999999999999999988888 788999999999999999999999999 999999999999998
Q ss_pred CC
Q 004006 232 DG 233 (779)
Q Consensus 232 ~~ 233 (779)
+|
T Consensus 79 ~P 80 (81)
T d2ghpa1 79 NP 80 (81)
T ss_dssp CC
T ss_pred cC
Confidence 76
|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=5.9e-20 Score=140.58 Aligned_cols=77 Identities=26% Similarity=0.472 Sum_probs=73.4
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++|+++|+++|++||.|.+++|++| +.+|+++|||||+|.+.++|++|++ + +|..|+||.|+|..|
T Consensus 7 ~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~kG~afV~f~~~~~a~~ai~-~--~~~~i~Gr~i~V~~A 82 (84)
T d1l3ka1 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMN-A--RPHKVDGRVVEPKRA 82 (84)
T ss_dssp GEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHH-T--CSCEETTEECEEEEC
T ss_pred cEEEEECCCCCCCHHHHHHHHHhhccccceeeccc-ccCCCcccEEEEEEcCHHHHHHHHH-h--CCCEECCEEEEEEee
Confidence 48999999999999999999999999999999999 9999999999999999999999996 5 899999999999887
Q ss_pred C
Q 004006 232 D 232 (779)
Q Consensus 232 ~ 232 (779)
.
T Consensus 83 ~ 83 (84)
T d1l3ka1 83 V 83 (84)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=6e-20 Score=140.98 Aligned_cols=75 Identities=25% Similarity=0.467 Sum_probs=72.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+++|||+|||+++|+++|+++|++||.|.+|+|+.| +.+|+++|||||+|.+.++|.+|++.| ||..++||+|+|
T Consensus 9 ~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~gr~i~V 83 (83)
T d2cqca1 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRV 83 (83)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC-SSSSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCCcccccccc-ccccccccceEEEECCHHHHHHHHHHc--CCCEECCEEeEC
Confidence 459999999999999999999999999999999999 889999999999999999999999999 999999999987
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.9e-20 Score=138.19 Aligned_cols=75 Identities=24% Similarity=0.461 Sum_probs=71.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+|||||||+++|+++|+++|++||.|.+++|++| +.||+++|||||+|.+.++|++|++ + ++..|+|+.|.|..|
T Consensus 1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d-~~t~~~kg~afV~f~~~~~a~~Al~-~--~~~~l~Gr~i~V~rA 75 (75)
T d1hd0a_ 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLD-PITGRSRGFGFVLFKESESVDKVMD-Q--KEHKLNGKVIDPKRA 75 (75)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCB-TTTTBCCSEEEEEESSHHHHHHHHH-T--CCCCBTTBCCEECCC
T ss_pred CEEEeCCCCcCCHHHHHHHHHhhccccccccccC-CCCCCcCceEEEEECCHHHHHHHHh-c--CCCEECCCEEEeeEC
Confidence 5899999999999999999999999999999999 8999999999999999999999996 6 899999999998653
|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=5.3e-20 Score=141.89 Aligned_cols=82 Identities=21% Similarity=0.400 Sum_probs=72.0
Q ss_pred ccceEEeccCCCcCCh-HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNWIKK-HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~-~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++++|||+|||+++|+ ++|+++|++||.|.+|+|..+++.+|+++|||||+|.+.++|.+|++ + ||..++||.|+|
T Consensus 3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~--n~~~~~gr~l~V 79 (86)
T d2ghpa3 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-M--NRSLLGNREISV 79 (86)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-G--TTEEETTEEEEE
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHh-c--CCCEECCEEEEE
Confidence 4569999999999865 56999999999999999988757899999999999999999999995 8 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
++++++
T Consensus 80 ~~a~~k 85 (86)
T d2ghpa3 80 SLADKK 85 (86)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999765
|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins A2/B1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=6e-20 Score=146.05 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=75.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++|+++|+++|++||.|.+++|.+| +.+++++|||||+|.+.++|.+|++ + +|..|+|+.|.|.+|
T Consensus 21 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d-~~~~~~kg~aFV~f~~~~~a~~al~-~--~~~~l~G~~i~V~~a 96 (103)
T d1x4ba1 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD-PASKRSRGFGFVTFSSMAEVDAAMA-A--RPHSIDGRVVEPKRA 96 (103)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC-TTTSSCCSEEEEECSSHHHHHHHHT-S--CSEEETTEEEEEECC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCcccceeeccc-ccCCCccCeEEEEECCHHHHHHHHH-h--CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999 8899999999999999999999985 5 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
.++-
T Consensus 97 ~~ke 100 (103)
T d1x4ba1 97 VARE 100 (103)
T ss_dssp SSCC
T ss_pred cccC
Confidence 8763
|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cold-inducible RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=4.6e-20 Score=144.32 Aligned_cols=83 Identities=30% Similarity=0.576 Sum_probs=78.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||||||+++|+++|+++|++||.|..+.++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|++|+|+
T Consensus 4 ~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~l--~~~~~~g~~l~V~ 80 (90)
T d1x5sa1 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD-RETQRSRGFGFVTFENIDDAKDAMMAM--NGKSVDGRQIRVD 80 (90)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC-SSSCSCCSEEEEECSSHHHHHHHHHHH--TTCCTTSCCCEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHhhhccccccceeeccc-cccccccceEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3458999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
++.++.
T Consensus 81 ~a~~~~ 86 (90)
T d1x5sa1 81 QAGKSS 86 (90)
T ss_dssp EEECCC
T ss_pred EcCCCC
Confidence 987664
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.80 E-value=8e-20 Score=140.84 Aligned_cols=78 Identities=24% Similarity=0.448 Sum_probs=74.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec--eEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v 228 (779)
+.+|||+|||+++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.++|.+|++.| ||..+.| ++|+|
T Consensus 6 ~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~~~l~V 82 (85)
T d1b7fa2 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD-KLTGRPRGVAFVRYNKREEAQEAISAL--NNVIPEGGSQPLSV 82 (85)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecc-cccccCceeEEEEECCHHHHHHHHHHH--CCCEeCCCCeEEEE
Confidence 348999999999999999999999999999999999 889999999999999999999999999 9999976 89999
Q ss_pred Eec
Q 004006 229 KLD 231 (779)
Q Consensus 229 ~~~ 231 (779)
+||
T Consensus 83 ~~A 85 (85)
T d1b7fa2 83 RLA 85 (85)
T ss_dssp EEC
T ss_pred EEC
Confidence 986
|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein D0 (AUF1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.8e-20 Score=138.11 Aligned_cols=75 Identities=25% Similarity=0.380 Sum_probs=70.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+|||||||+++|+++|+++|++||.|.+|+|++| +.||+++|||||+|.+.++|++|++. +++.++|+.|.|..|
T Consensus 1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d-~~t~~~rG~~FV~f~~~~~a~~al~~---~~~~i~g~~i~vk~A 75 (75)
T d1x0fa1 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFITFKEEEPVKKIMEK---KYHNVGLSKCEIKVA 75 (75)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHSCEEEEECCCC-TTTCCTTCCEEEEESSSHHHHHHTTC---SSCCBTTBCCEEECC
T ss_pred CEEEcCCCCCCCHHHHHHHHHHhCCccccccccc-ccccccccEEEEEECCHHHHHHHHhh---CCCEECCEEeEEEEC
Confidence 5899999999999999999999999999999999 89999999999999999999999853 789999999999865
|
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=1.4e-19 Score=142.13 Aligned_cols=84 Identities=30% Similarity=0.442 Sum_probs=77.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||+|||+++++++|+++|++||.|.+|+|++|...+|+++|||||+|.+.++|.+|++.| .||..++|++|+|+|
T Consensus 8 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l-~~~~~~~Gr~l~V~~ 86 (94)
T d2cpha1 8 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL-CHSTHLYGRRLVLEW 86 (94)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH-HTCCBSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHc-cCCcEECCEEEEEEE
Confidence 3599999999999999999999999999999999986679999999999999999999999874 278999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
|+...
T Consensus 87 A~~~~ 91 (94)
T d2cpha1 87 ADSEV 91 (94)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97663
|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=8.4e-20 Score=140.29 Aligned_cols=79 Identities=25% Similarity=0.461 Sum_probs=74.3
Q ss_pred EEeccCCCcCChHHHHHHHhccCCeeEE-EEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 154 ~~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
|||||||+++|+++|+++|++||.|.++ ++++| +.+|+++|||||+|.+.++|.+|++.+ ||..++|++|+|+++.
T Consensus 1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~~--~g~~~~gr~l~v~~a~ 77 (83)
T d1x5ta1 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD-PDTGNSKGYAFINFASFDASDAAIEAM--NGQYLCNRPITVSYAF 77 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC-TTTCSCCSEEEEEBSSHHHHHHHHHTT--TTCEETTEECEEEESC
T ss_pred CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEee-ccccccCceEEEEECCHHHHHHHHHhC--CCcEECCEEEEEEEec
Confidence 7999999999999999999999999764 78888 889999999999999999999999999 9999999999999998
Q ss_pred Ccc
Q 004006 233 GRR 235 (779)
Q Consensus 233 ~~~ 235 (779)
++.
T Consensus 78 ~k~ 80 (83)
T d1x5ta1 78 KKD 80 (83)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cleavage stimulation factor, 64 kda subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.2e-19 Score=146.25 Aligned_cols=81 Identities=30% Similarity=0.564 Sum_probs=77.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++|+++|+++|++||.|.+|+|+.| +.||+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+++
T Consensus 9 rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~-~~tg~~~g~afV~f~~~~~a~~ai~~l--~~~~~~g~~i~V~~a 85 (104)
T d1p1ta_ 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYD-RETGKPKGYGFCEYQDQETALSAMRNL--NGREFSGRALRVDNA 85 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEE-TTTTEEEEEEEEECSCHHHHHHHHHHS--SSBSCSSSCBEEEET
T ss_pred CEEEEECCCCcCCHHHHHHhhhccccccccccccc-cceeccCCceEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 48999999999999999999999999999999999 889999999999999999999999999 999999999999998
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
.++.
T Consensus 86 ~~~~ 89 (104)
T d1p1ta_ 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCCC
Confidence 7764
|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.6e-19 Score=138.69 Aligned_cols=81 Identities=23% Similarity=0.424 Sum_probs=74.7
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.++|||||||.++|+++|+++|++||.|.+|+++.| +.++ +|||||+|.+.++|.+|+..+ ||..++|+.|+|.
T Consensus 7 ~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~~~--~~~afV~f~~~~~A~~A~~~l--~~~~~~g~~i~v~ 81 (90)
T d2cqia1 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSN--DPYCFVEFYEHRDAAAALAAM--NGRKILGKEVKVN 81 (90)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC-CCSS--CCEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecc-cCcc--ceeeEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3459999999999999999999999999999999988 5544 799999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+|+++.
T Consensus 82 ~a~~~~ 87 (90)
T d2cqia1 82 WATTPS 87 (90)
T ss_dssp ECCCTT
T ss_pred EcCCCC
Confidence 997664
|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding region containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.8e-19 Score=144.17 Aligned_cols=79 Identities=32% Similarity=0.483 Sum_probs=74.5
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+.+|+++|+++|++||.|.+|+|+.| +.||+++|||||+|.+.++|.+|++.+ |+ .|+||.|+|+++
T Consensus 11 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~kg~afV~f~~~~~A~~Ai~~~--~~-~l~Gr~l~V~~a 86 (103)
T d2cqda1 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD-RQTGKSRGYGFVTMADRAAAERACKDP--NP-IIDGRKANVNLA 86 (103)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC-SSSCCCCSEEEEEESSHHHHHHHHTCS--SC-EETTEECEEEES
T ss_pred cEEEEeCCCCcCcHHHHHHHHhhcccccceecccc-ccccccCCeEEEEECCHHHHHHHHHHC--CC-cCCCEEEEEEEc
Confidence 48999999999999999999999999999999999 889999999999999999999999987 76 799999999998
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
..+
T Consensus 87 ~~~ 89 (103)
T d2cqda1 87 YLG 89 (103)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.78 E-value=1.7e-19 Score=139.31 Aligned_cols=78 Identities=28% Similarity=0.511 Sum_probs=72.5
Q ss_pred EEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCC---CCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE---KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 154 ~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
|||||||+++|+++|+++|++||.|.+++|+++ +.++ +++|||||+|.+.++|.+|++.+ ||..++|+.|+|++
T Consensus 1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~~~~~~kG~afV~f~~~~~A~~A~~~~--~~~~~~g~~i~V~~ 77 (85)
T d2cpfa1 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKK-KNKAGVLLSMGFGFVEYKKPEQAQKALKQL--QGHTVDGHKLEVRI 77 (85)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-ECTTCCEEEEEEEEEEESSHHHHHHHHHHS--TTCEETTEECEEEC
T ss_pred CEEcCCCCCCCHHHHHHHHHHhCCccccceecc-cccccccccceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEE
Confidence 799999999999999999999999999999988 5554 57999999999999999999999 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
++..
T Consensus 78 a~~~ 81 (85)
T d2cpfa1 78 SERA 81 (85)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 8544
|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5e-19 Score=138.69 Aligned_cols=80 Identities=28% Similarity=0.483 Sum_probs=74.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||||||+.+++++|+++|++||.|.+|+++.| + +.++|||||+|.+.++|.+|+..| ||..++|+.|+|++
T Consensus 11 ~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~-~--~~~kg~afV~f~~~~~a~~Ai~~l--~~~~~~g~~l~V~~ 85 (93)
T d2cq3a1 11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVNN 85 (93)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC-T--TTTCCEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcceeeecccccc-c--cCCcceeEEEECCHHHHHHHHHHc--CCCEECCEEEEEEe
Confidence 358999999999999999999999999999999987 3 346999999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
|+++.
T Consensus 86 A~~r~ 90 (93)
T d2cq3a1 86 ATARV 90 (93)
T ss_dssp CCSSC
T ss_pred cCcCC
Confidence 98875
|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.3e-19 Score=139.53 Aligned_cols=80 Identities=25% Similarity=0.472 Sum_probs=74.3
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||+|||+++|+++|+++|++||.|.+++|+.| + +.++|||||+|.+.++|++|++.| ||..++|++|+|++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-~--~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~i~V~~ 82 (89)
T d1cvja2 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGR 82 (89)
T ss_dssp TTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCB-T--TBCCSCEEEEESCHHHHHHHTTSS--SEEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEee-c--CCCcceeEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 358999999999999999999999999999999987 4 447899999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 83 a~~~~ 87 (89)
T d1cvja2 83 FKSRK 87 (89)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 98764
|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.8e-19 Score=134.65 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=72.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+++|+++|+++|++||.|..+++..| +.+|+++|||||+|.+.+++.+|++ + ||..|+||.|+|+.|
T Consensus 3 r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~-~~~~~~~g~afV~f~~~e~~~~al~-~--~~~~l~Gr~i~V~~A 78 (79)
T d1l3ka2 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVI-Q--KYHTVNGHNCEVRKA 78 (79)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHH-C--SCCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHHhccccccccccC-CCCcccccEEEEEEcCHHHHHHHHH-h--CCCEECCEEEEEEEC
Confidence 49999999999999999999999999999999999 8899999999999999999999984 6 999999999999875
|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 28 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=6.8e-19 Score=140.65 Aligned_cols=86 Identities=24% Similarity=0.361 Sum_probs=78.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhh----hCCceeece
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVE----FDGVEFHGR 224 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~----~~g~~~~~~ 224 (779)
.++++|||||||+++|+++|+++|++||.|.++.++.+ +.+++++|||||+|.+.++|.+|++.+. .+|..++||
T Consensus 6 ~~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr 84 (98)
T d1x4ha1 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH-PDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 84 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccc-cccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCE
Confidence 34569999999999999999999999999999999998 8899999999999999999999999871 137889999
Q ss_pred EEEEEecCCcc
Q 004006 225 VLTVKLDDGRR 235 (779)
Q Consensus 225 ~~~v~~~~~~~ 235 (779)
.|+|++++++.
T Consensus 85 ~l~v~~a~~k~ 95 (98)
T d1x4ha1 85 QLKVDLAVTRD 95 (98)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCC
Confidence 99999998764
|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Neural RNA-binding protein Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=4e-19 Score=133.81 Aligned_cols=75 Identities=25% Similarity=0.478 Sum_probs=71.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+|||||||+++|+++|+++|++||.|..+.++.+ +.+|+++|||||+|.+.++|++|++ + ||+.|+||+|+|++|
T Consensus 1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~-~~~~~~~~~afV~F~~~~~a~~al~-~--~~~~l~gr~i~V~~A 75 (75)
T d2msta_ 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD-KTTNRHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBCC-TTCTTSCCEEEEECSCHHHHHHHHH-C--SSCCBTTBCCEEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeee-ccccccCceeEEEECCHHHHHHHHh-c--CCCEECCeEEEEEEC
Confidence 5999999999999999999999999999999998 8899999999999999999999996 7 999999999999875
|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.7e-19 Score=140.13 Aligned_cols=85 Identities=21% Similarity=0.382 Sum_probs=76.4
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCC-eeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+|+|||||||.++++++|+++|++||. |.++++++|...+|+++|||||+|.+.++|.+|++.|..++..++|++|+|+
T Consensus 1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~ 80 (96)
T d2disa1 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 80 (96)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEE
Confidence 479999999999999999999999996 8999999986678999999999999999999999998334556689999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
||+++.
T Consensus 81 ~A~p~~ 86 (96)
T d2disa1 81 WAEPEI 86 (96)
T ss_dssp ESCSSC
T ss_pred EcCCCC
Confidence 998764
|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.1e-18 Score=137.21 Aligned_cols=76 Identities=18% Similarity=0.434 Sum_probs=72.4
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||||||.++++++|+++|++||.|.+|+|++| ||||||+|.+.++|.+|+..| ||..|+|+.|+|.
T Consensus 17 ~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~-------kg~afV~f~~~~~A~~Ai~~l--~~~~i~g~~l~v~ 87 (96)
T d1x4ga1 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSV--NGTTIEGHVVKCY 87 (96)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEec-------ceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3468999999999999999999999999999999988 899999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
|++++
T Consensus 88 ~ak~~ 92 (96)
T d1x4ga1 88 WGKES 92 (96)
T ss_dssp CCCCC
T ss_pred EcCCC
Confidence 99765
|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Non-POU domain-containing octamer-binding protein, NonO species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=6.3e-19 Score=135.46 Aligned_cols=77 Identities=27% Similarity=0.514 Sum_probs=72.7
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.++|||||||.++++++|+++|++||.|.+|++.++ +|||||+|++.++|.+|++.| ||..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~~-------k~~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~V 76 (86)
T d2cpja1 6 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVEL--DNMPLRGKQLRV 76 (86)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHH--TTCCBTTBCCEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeecc-------cceEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 34568999999999999999999999999999999987 899999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
++|...
T Consensus 77 ~~A~~~ 82 (86)
T d2cpja1 77 RFACHS 82 (86)
T ss_dssp EESSCC
T ss_pred EECCCc
Confidence 999765
|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.5e-18 Score=135.42 Aligned_cols=81 Identities=27% Similarity=0.542 Sum_probs=74.0
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++.++|||+|||+++|+++|+++|++||.|..+++..+ +.++|||||+|.+.++|..|++.| ||..|+|++|+|
T Consensus 12 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~e~a~~Ai~~l--~g~~~~g~~l~V 85 (95)
T d1x4aa1 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR----RGGPPFAFVEFEDPRDAEDAVYGR--DGYDYDGYRLRV 85 (95)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS----SSSSCCEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEeccc----ccccceEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 44568999999999999999999999999999988655 567999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+++++.+
T Consensus 86 ~~a~~~r 92 (95)
T d1x4aa1 86 EFPRSGR 92 (95)
T ss_dssp ECCCCCC
T ss_pred EeccCCC
Confidence 9998753
|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein EWS species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.7e-18 Score=139.10 Aligned_cols=83 Identities=27% Similarity=0.438 Sum_probs=76.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCee--------EEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
+..+|||||||+++|+++|+++|++||.|. .+.+..| +.+|+++|||||+|.+.++|.+|++.| ||..|
T Consensus 7 ~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d-~~~~~~~g~afV~f~~~~~a~~Ai~~l--~g~~~ 83 (101)
T d2cpea1 7 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD-KETGKPKGDATVSYEDPPTAKAAVEWF--DGKDF 83 (101)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC-TTTCSBCSEEEEEBSSHHHHHHHHHHH--TTCEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeec-cccccccceeeEEecCHHHHHHHHHHh--CCCEE
Confidence 446999999999999999999999999884 5677777 788999999999999999999999999 99999
Q ss_pred eceEEEEEecCCcc
Q 004006 222 HGRVLTVKLDDGRR 235 (779)
Q Consensus 222 ~~~~~~v~~~~~~~ 235 (779)
+||+|+|++++++.
T Consensus 84 ~gr~i~V~~a~~~~ 97 (101)
T d2cpea1 84 QGSKLKVSLARKKP 97 (101)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCEEEEEEEcCCCC
Confidence 99999999998764
|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.74 E-value=2.3e-19 Score=139.43 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=73.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||||||+++|+++|+++|++||.|..++|+. ..+|+++|||||+|.+.++|.+|++ + ||..++|+.|+|++
T Consensus 13 ~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~--~~~g~~kg~afv~F~~~e~a~~Al~-~--~g~~~~g~~i~V~~ 87 (91)
T d1fjeb1 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVD--VRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLEK 87 (91)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCE--EEEETTTTEEEEEESSHHHHHHHHH-G--GGEEETTEEEEEEC
T ss_pred CcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeee--cCCCCccEEeEEeeCCHHHHHHHHh-c--CCcEECCEEEEEEe
Confidence 34899999999999999999999999999998864 4689999999999999999999995 8 99999999999999
Q ss_pred cCCc
Q 004006 231 DDGR 234 (779)
Q Consensus 231 ~~~~ 234 (779)
|++|
T Consensus 88 ak~k 91 (91)
T d1fjeb1 88 PKGR 91 (91)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9764
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.9e-18 Score=140.18 Aligned_cols=77 Identities=22% Similarity=0.435 Sum_probs=72.2
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||.++|+++|+++|++||.|.+|++..+ ++++|||||+|.+.++|..|++.| ||..|+|+.|+|.++
T Consensus 8 r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~----~~~kG~afV~f~~~~~A~~Ai~~l--~g~~~~gr~l~V~~a 81 (114)
T d2f9da1 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT----PETRGTAYVVYEDIFDAKNACDHL--SGFNVCNRYLVVLYY 81 (114)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS----TTTTTEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCeEeeccccc----CCcCCeEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEc
Confidence 58999999999999999999999999999999765 677999999999999999999999 999999999999998
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
...
T Consensus 82 ~~~ 84 (114)
T d2f9da1 82 NAN 84 (114)
T ss_dssp CHH
T ss_pred CCC
Confidence 543
|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 41, RBM41 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.7e-19 Score=142.58 Aligned_cols=83 Identities=14% Similarity=0.305 Sum_probs=78.5
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
+++|||+|||.++++++|+++|++||.|..+.++.+ ..+|+++|||||+|.+.++|.+|++.| ||..++|++|+|+|
T Consensus 18 s~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~g~~~g~~fV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 94 (102)
T d2cpxa1 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR-MMTGRMRGQAFITFPNKEIAWQALHLV--NGYKLYGKILVIEF 94 (102)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEE-EECSSSCSEEEEECSSHHHHHHHHHHS--TTCBCSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecc-cccccccccceEEeccHHHHHHHHHHh--CCCEECCEEEEEEe
Confidence 459999999999999999999999999999999888 788999999999999999999999999 99999999999999
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
++++..
T Consensus 95 ak~k~~ 100 (102)
T d2cpxa1 95 GKNKKQ 100 (102)
T ss_dssp CCCCSC
T ss_pred CCCccc
Confidence 988753
|
| >d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: E3 ubiquitin protein ligase CNOT4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=2.9e-18 Score=132.71 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=70.0
Q ss_pred ccceEEeccCCCcCChHHH---HHHHhccCCeeEEEEecCCCCCCCC---cceEEEEeCCHHHHHHHHHHhhhCCceeec
Q 004006 150 QEGKIFVGNLPNWIKKHLV---MEFFRQFGPIKNVILIKGYNNFEKN---VGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l---~~~f~~~g~i~~~~~~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~ 223 (779)
+..+|||||||+++++++| .++|++||.|.+|.|++| +.++++ +|||||+|.+.++|.+|++.| ||..++|
T Consensus 7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~-~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~l--ng~~~~g 83 (89)
T d2cpia1 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS-TSYAGSQGPSASAYVTYIRSEDALRAIQCV--NNVVVDG 83 (89)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECC-SSCCSSSCCCEEEEEEESSHHHHHHHHHHH--TTEEETT
T ss_pred ecCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeec-cCcCCCCCcceEEEEecccchhHHHHHHHh--CCCEECC
Confidence 3458999999999999999 678999999999999998 666555 499999999999999999999 9999999
Q ss_pred eEEEEE
Q 004006 224 RVLTVK 229 (779)
Q Consensus 224 ~~~~v~ 229 (779)
|.|+|+
T Consensus 84 r~lkvS 89 (89)
T d2cpia1 84 RTLKAS 89 (89)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999985
|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.3e-18 Score=130.40 Aligned_cols=77 Identities=16% Similarity=0.300 Sum_probs=71.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||.++|+++|+++|++||.|.+|++..+ .+|+++|||||+|.+.++|.+|++ + +|..+.|+.|+|.+
T Consensus 6 ~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~--~~~~~kG~afV~f~~~e~a~~al~-~--~~~~~~g~~l~v~~ 80 (85)
T d1zh5a2 6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT--LHKAFKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLLILF 80 (85)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC--TTCCEEEEEEEEESCHHHHHHHHT-C--CCCEETTEECEEEE
T ss_pred cCEEEEECCCCCCCHHHHHHHHHHhcccccceeeee--ccCCcceEEEEEEcCHHHHHHHHH-H--CCCEECCEEEEEEE
Confidence 459999999999999999999999999999999876 479999999999999999999995 5 99999999999998
Q ss_pred cC
Q 004006 231 DD 232 (779)
Q Consensus 231 ~~ 232 (779)
+.
T Consensus 81 ~~ 82 (85)
T d1zh5a2 81 KD 82 (85)
T ss_dssp GG
T ss_pred cC
Confidence 64
|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: IGF-II mRNA-binding protein 2 isoform A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.8e-18 Score=130.90 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=69.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCc-eeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV-EFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~-~~~~~~~~v~~~ 231 (779)
+|||||||.++|+++|+++|++||.|.++++..+ +|||||+|.+.++|.+|++.| ||. .++|++|+|+++
T Consensus 3 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~-------rg~aFV~f~~~~~A~~Ai~~l--ng~~~~~G~~i~V~~a 73 (80)
T d2cqha1 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK-------SGYAFVDYPDQNWAIRAIETL--SGKVELHGKIMEVDYS 73 (80)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE-------TTEEEECCSCHHHHHHHHHHH--TTTCEETTEECEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCcEEEeEEecc-------cceEEEEECCHHHHHHHHHHh--CCCeEECCEEEEEEEc
Confidence 7999999999999999999999999987777655 899999999999999999999 996 699999999999
Q ss_pred CCcch
Q 004006 232 DGRRL 236 (779)
Q Consensus 232 ~~~~~ 236 (779)
.++..
T Consensus 74 ~~k~~ 78 (80)
T d2cqha1 74 VSKKL 78 (80)
T ss_dssp CCCCC
T ss_pred CCcCc
Confidence 88753
|
| >d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.7e-18 Score=138.02 Aligned_cols=82 Identities=11% Similarity=0.227 Sum_probs=75.8
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++++++|+++|++||.|..+++..+ .+|+++|||||+|.+.++|.+|++.| ||..|.||++.|..
T Consensus 18 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~--~~~~~~g~afV~f~~~~~A~~Ai~~l--ng~~i~gr~~~v~~ 93 (101)
T d1x5oa1 18 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD--SSGTSRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAP 93 (101)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSCEEEEEEEEESCHHHHHHHHHHH--BTCCCCCCTTSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecc--cccccccceeEEeCCHHHHHHHHHHh--CCCEECCcCCccCC
Confidence 358999999999999999999999999999999886 47899999999999999999999999 99999999999988
Q ss_pred cCCcch
Q 004006 231 DDGRRL 236 (779)
Q Consensus 231 ~~~~~~ 236 (779)
+++..+
T Consensus 94 ~~Pl~v 99 (101)
T d1x5oa1 94 TEPLLC 99 (101)
T ss_dssp SSCBEE
T ss_pred CCCccc
Confidence 877543
|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.8e-18 Score=128.59 Aligned_cols=71 Identities=20% Similarity=0.402 Sum_probs=68.5
Q ss_pred EEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEE
Q 004006 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (779)
Q Consensus 154 ~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~ 227 (779)
|||||||+++|+++|+++|++||.|..+++.++ +.+|+++|||||+|.+.++|++|++.| ||..++||.++
T Consensus 1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~Gr~~k 71 (72)
T d1x4ea1 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD-KTTNKCKGYGFVDFDSPSAAQKAVTAL--KASGVQAQMAK 71 (72)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC-SSSCSCCSEEEEEESCHHHHHHHHHHH--HHHTCCEESCC
T ss_pred CEEeCCCCcCCHHHHHHHHhhhccccccccccc-cccccccceeEEEECCHHHHHHHHHHh--CCCEECCEECc
Confidence 799999999999999999999999999999999 889999999999999999999999999 99999999764
|
| >d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Negative elongation factor E, NELF-E species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=6.5e-18 Score=127.58 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=69.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+++|||+|++ +|+++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 4 ~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~~~-------~~~afV~f~~~~~A~~Ai~~l--ng~~~~g~~l~V~ 72 (79)
T d2bz2a1 4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPP-------RNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVN 72 (79)
T ss_dssp CCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCCEEEEECCC--CCHHHHHHHHhccCccceeeeccC-------CCEEEEEEcccHHHHHHHHHh--CCCEECCEEEEEE
Confidence 45699999985 899999999999999999999876 899999999999999999999 9999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
|++++
T Consensus 73 ~a~~~ 77 (79)
T d2bz2a1 73 IARKQ 77 (79)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 99765
|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 4B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=7.8e-18 Score=135.58 Aligned_cols=80 Identities=26% Similarity=0.433 Sum_probs=73.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||+|||+++|+++|+++|++|| +.+++++.++..+|+++|||||+|.+.++|++|+ .+ ||..|+||.|+|.++
T Consensus 16 ~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~--~~~~~~gr~l~V~~a 91 (104)
T d1wi8a_ 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNKRIRVDVA 91 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GG--GTCEETTEECEEEEC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHH-Hc--CCCEECCEEEEEEEC
Confidence 5999999999999999999999999 7888888886678999999999999999998777 47 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
..+.
T Consensus 92 ~~~~ 95 (104)
T d1wi8a_ 92 DQAQ 95 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7764
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=7.8e-18 Score=131.34 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=72.1
Q ss_pred ccceEEeccCCCcCChHHHH----HHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE
Q 004006 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~ 225 (779)
++++|||||||+++++++|+ ++|++||.|.+|++.. +|+++|||||+|.+.++|.+|++.+ ||..++|+.
T Consensus 2 P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~----~~~~~g~afV~F~~~~~A~~A~~~~--~~~~~~g~~ 75 (91)
T d1nu4a_ 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDKP 75 (91)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH----HHHHTTCEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEee----eccCCCceEEEECCHHHHHHHHHHh--CCCEECCEE
Confidence 45699999999999999886 4689999999998854 4788999999999999999999999 999999999
Q ss_pred EEEEecCCcc
Q 004006 226 LTVKLDDGRR 235 (779)
Q Consensus 226 ~~v~~~~~~~ 235 (779)
|+|.+++++.
T Consensus 76 l~v~~ak~~~ 85 (91)
T d1nu4a_ 76 MRIQYAKTDS 85 (91)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEeCCCc
Confidence 9999998763
|
| >d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.71 E-value=1.4e-17 Score=127.32 Aligned_cols=74 Identities=20% Similarity=0.385 Sum_probs=68.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee-eceEEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-HGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~-~~~~~~v~ 229 (779)
+++|||+|||.++|+++|.++|++||.|.+++++++ .+|||||+|.+.++|.+|+..| ||..+ +|++|+|+
T Consensus 8 ~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~------~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~~~i~v~ 79 (83)
T d2b0ga1 8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN------RHDIAFVEFTTELQSNAAKEAL--QGFKITPTHAMKIT 79 (83)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTT------TCSCEEEEESSHHHHHHHHHHH--TTCBSSTTCBCEEE
T ss_pred CCEEEEECCCCCCCHHHHHhhhccCccEEEeeeecc------cceeEEEecCCHHHHHHHHHHh--CCcEeCCCcEEEEE
Confidence 459999999999999999999999999999999875 2689999999999999999999 99998 57999999
Q ss_pred ecC
Q 004006 230 LDD 232 (779)
Q Consensus 230 ~~~ 232 (779)
||+
T Consensus 80 ~ak 82 (83)
T d2b0ga1 80 FAK 82 (83)
T ss_dssp ECC
T ss_pred Eec
Confidence 985
|
| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.71 E-value=6.7e-18 Score=133.26 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=71.5
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
++.++|||||||+++|+++|+++|++||.|..++ .+|+++|||||+|.+.++|.+|++.| ||..|+||+|+|
T Consensus 14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~------~~~~~~~~afV~f~~~~~A~~A~~~l--~~~~~~gr~i~V 85 (96)
T d1fjca_ 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVS------QDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSL 85 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEE------ETTEEEEEEEEEESSHHHHHHHHHHT--TEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcccceeee------ecCccccEEEEEeCCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 3456999999999999999999999999876553 35888999999999999999999999 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.|+.++.
T Consensus 86 ~~a~~k~ 92 (96)
T d1fjca_ 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEeCCCC
Confidence 9998875
|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: APOBEC1 stimulating protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2e-17 Score=127.69 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=70.2
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|..+++.+. +|||||+|.+.++|.+|+..| ||..|+|+.|+|+|
T Consensus 8 ~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~~~-------rg~afV~f~~~~~A~~Ai~~l--~~~~i~g~~i~V~~ 78 (86)
T d2cpda1 8 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKAL--NGKVLDGSPIEVTL 78 (86)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHH--SSEEETTEEEEEEC
T ss_pred CCEEEEcCCCCCCCHHHHHHhhcccceeeeEEEccc-------cEEEEEEeCCHHHHHHHHHHc--CCCEECCEEEEEEe
Confidence 358999999999999999999999999988777544 899999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 79 akP~~ 83 (86)
T d2cpda1 79 AKPVD 83 (86)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98764
|
| >d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.3e-17 Score=127.03 Aligned_cols=78 Identities=10% Similarity=0.196 Sum_probs=70.2
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee-eceEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-HGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~-~~~~~~v 228 (779)
++++|||||||+++|+++|+++|++||.|..+.+.. ++++|||||+|++.++|.+|+..| ||..+ +|+.|+|
T Consensus 9 Ps~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~-----~~~~~~afV~f~~~~~A~~A~~~l--~~~~i~~g~~l~v 81 (88)
T d2adca2 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-----QKDRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLRV 81 (88)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-----SSSTTCEEEEESSHHHHHHHHHHH--TTCBSSSSCBCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEee-----ecccceeEEEECCHHHHHHHHHhc--cCCEecCCCEEEE
Confidence 345999999999999999999999999998887664 345899999999999999999999 99998 6999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
+|++++
T Consensus 82 ~~sk~~ 87 (88)
T d2adca2 82 SFSKST 87 (88)
T ss_dssp EECSSC
T ss_pred EeCCCC
Confidence 999765
|
| >d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein 2, PTBP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.2e-17 Score=127.00 Aligned_cols=80 Identities=13% Similarity=0.248 Sum_probs=73.2
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.++++|||||||.++++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.+..++..++|++|+|
T Consensus 6 ~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~-------~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v 78 (88)
T d2cq1a1 6 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 78 (88)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccccccccccccc-------ceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEE
Confidence 34569999999999999999999999999999999877 79999999999999999998755788999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
+|++.+.
T Consensus 79 ~~sk~~~ 85 (88)
T d2cq1a1 79 QYSNHKE 85 (88)
T ss_dssp EECSCSS
T ss_pred EECCCCC
Confidence 9997764
|
| >d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Ribonucleoprotein PTB-binding 1, Raver-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=5.2e-17 Score=120.71 Aligned_cols=72 Identities=19% Similarity=0.352 Sum_probs=64.9
Q ss_pred EEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCC
Q 004006 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDG 233 (779)
Q Consensus 154 ~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~ 233 (779)
|||||||+++++++|+++|++|| +..+++ ++++|||||+|.+.++|.+|++.| ||..++|++|+|++++.
T Consensus 1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~-------~~~~g~afv~f~~~~~A~~Ai~~l--n~~~~~g~~l~V~~a~~ 70 (75)
T d1wi6a1 1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-------DKYKGTAFVTLLNGEQAEAAINTF--HQSRLRERELSVQLQPT 70 (75)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSC-EEEEEE-------ETTTTEEEEEESSHHHHHHHHHHH--TTEESSSCEEEEEECCS
T ss_pred CEEeCCCCcCCHHHHHHHHhccc-ccceee-------cccceeEEEEECCHHHHHHHHHHh--CCccCCCCEEEEEEeCC
Confidence 79999999999999999999999 555554 345999999999999999999999 99999999999999976
Q ss_pred cc
Q 004006 234 RR 235 (779)
Q Consensus 234 ~~ 235 (779)
..
T Consensus 71 d~ 72 (75)
T d1wi6a1 71 DA 72 (75)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2e-17 Score=130.24 Aligned_cols=74 Identities=30% Similarity=0.518 Sum_probs=67.6
Q ss_pred cceEEeccCC-CcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+++||||||+ ..+++++|+++|++||.|.+++|. ||||||+|++.++|.+|++.| ||..|+|+.|+|+
T Consensus 15 ~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i~---------rg~aFV~f~~~~~A~~Ai~~l--ng~~~~g~~l~V~ 83 (98)
T d1wf2a_ 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH---------KGFAFVQYVNERNARAAVAGE--DGRMIAGQVLDIN 83 (98)
T ss_dssp CCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEEE---------TEEEEEEESSHHHHHHHHHTT--TTCEETTEECEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEEe---------CCeEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3589999997 567888999999999999999883 789999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++.+.
T Consensus 84 ~a~~~~ 89 (98)
T d1wf2a_ 84 LAAEPK 89 (98)
T ss_dssp ETTSCC
T ss_pred ECCCCC
Confidence 997654
|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=5.6e-17 Score=120.53 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=66.8
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
+|||+|||+.+++++|+++|++||.|..+++..+ +. ..+|||||+|.+.++|++|+. + ||..|+|++|.|+.+
T Consensus 2 tv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~-~~--~~~~~afV~F~~~~~a~~Al~-~--~~~~i~g~~i~V~~~ 74 (75)
T d2ghpa2 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS-LK--KNFRFARIEFARYDGALAAIT-K--THKVVGQNEIIVSHL 74 (75)
T ss_dssp EEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEEC-TT--SSSEEEEEEESSHHHHHHHHT-T--TTCEETTEECEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHhcCCceEEEEEEee-cc--ccceEEEEEEcchHHhHHHHH-h--cCcEECCEEEEEEEC
Confidence 7999999999999999999999999999999987 43 346899999999999999984 6 999999999999864
|
| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein KIAA1579 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5e-17 Score=125.31 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=65.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||+|||+++++++|+++|++|| ++.+.+ ++++|||||+|.+.++|++|++.| ||..|+|++|+|+++
T Consensus 6 ~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~-------~~~kg~afV~f~~~~~A~~Ai~~l--n~~~~~G~~l~V~~a 75 (88)
T d1wg1a_ 6 SGILVKNLPQDSNCQEVHDLLKDYD-LKYCYV-------DRNKRTAFVTLLNGEQAQNAIQMF--HQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSSC-CCCEEE-------EGGGTEEEECCSCHHHHHHHHHHH--TTEEETTEEEEEEEC
T ss_pred CEEEEeCCCCccChHHHHHHHHhcC-ceeeee-------eccCCceEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEc
Confidence 4899999999999999999999999 333444 344899999999999999999999 999999999999999
Q ss_pred CCcc
Q 004006 232 DGRR 235 (779)
Q Consensus 232 ~~~~ 235 (779)
+++.
T Consensus 76 ~~~~ 79 (88)
T d1wg1a_ 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7664
|
| >d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.4e-17 Score=128.41 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=68.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
+|||||||+.+|+++|+++|++||.|.++++..| |||||+|.+.++|++|++.| ||..|+|+.|+|.+++
T Consensus 2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~i~v~~~~ 71 (87)
T d3begb1 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETAYIR 71 (87)
T ss_dssp CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHH--TTCBCCCTTSCCCBCE
T ss_pred eEEEECCCCcCCHHHHHHHHhhhccccccccccc--------ceeeEEeCCHHHHHHHHHHh--CCCEECCcEeEEeEEe
Confidence 7999999999999999999999999999998764 89999999999999999999 9999999999998875
Q ss_pred Ccc
Q 004006 233 GRR 235 (779)
Q Consensus 233 ~~~ 235 (779)
.+.
T Consensus 72 ~~~ 74 (87)
T d3begb1 72 VKV 74 (87)
T ss_dssp EEE
T ss_pred cCc
Confidence 543
|
| >d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=4.1e-17 Score=133.58 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=70.5
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
+..++|||+|||+++++++|+++|++||.|..|.|... +|||||+|.+.++|.+|++.| ||..|.|++|+|
T Consensus 8 r~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~~-------kg~afV~f~~~~~A~~A~~~l--ng~~~~gr~l~v 78 (111)
T d1whxa_ 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-------GITAIVEFLEPLEARKAFRHL--AYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-------SSCEEEEESCHHHHHHHHHHH--TTCBSSSSBCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHhhhhccCCccEEEeecc-------CceEEEEEcCHHHHHHHHHHH--cCCccCCCeEEE
Confidence 34469999999999999999999999999999988544 899999999999999999999 999999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
+++...
T Consensus 79 ~~a~~~ 84 (111)
T d1whxa_ 79 EWAPIG 84 (111)
T ss_dssp EEEETT
T ss_pred EECCCC
Confidence 998544
|
| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=2.1e-17 Score=127.64 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=69.7
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
..|||+|||+++++++|+++|+.||.+....++.+ ..+|+++|||||+|.+.++|++|++.+ ||..++||+|+|.++
T Consensus 10 ~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~-~~~g~~~G~afV~f~~~e~a~~Ai~~l--~~~~l~gr~i~v~l~ 86 (86)
T d2cqpa1 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLVLG 86 (86)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHT--TTCEETTEECEEEES
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEe-CCCCCcceEEEEEEcCcHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 47999999999999999999999999976434444 568999999999999999999999999 999999999999875
|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.8e-17 Score=131.64 Aligned_cols=77 Identities=17% Similarity=0.348 Sum_probs=70.7
Q ss_pred cceEEeccCCC-cCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+.+|||+||++ .+|+++|+++|++||.|++|+|++| + +|||||+|++.++|.+|++.| ||..|+|+.|+|+
T Consensus 2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~-~-----kg~afV~f~~~~~A~~ai~~l--ng~~l~g~~l~v~ 73 (109)
T d2adca1 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIRIT 73 (109)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT-T-----SCCEEEEESCHHHHHHHHHHH--TTCBCSSSBCEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEec-c-----cceEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 35999999965 5999999999999999999999987 2 799999999999999999999 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++.+.
T Consensus 74 ~s~~~~ 79 (109)
T d2adca1 74 LSKHQN 79 (109)
T ss_dssp CCSCCC
T ss_pred ECCCCC
Confidence 987654
|
| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Putative RNA-binding protein 15B, Rbm15b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=1.5e-16 Score=125.53 Aligned_cols=75 Identities=24% Similarity=0.449 Sum_probs=70.1
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeec--eEEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~--~~~~v 228 (779)
.++|||+|||+++++++|+++|++||.|..+++.++ +|||||+|.+.++|.+|++.| ||..|+| ++|+|
T Consensus 17 s~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~-------~~~afV~f~~~~~A~~A~~~l--~~~~i~g~~~~l~v 87 (97)
T d1whya_ 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKM--RGFPLGGPDRRLRV 87 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHH--TTCBCSSSSCBCEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhhcccceEeeecc-------ccEEEeccCCHHHHHHHHHHh--CCCEeCCCceEEEE
Confidence 459999999999999999999999999999999877 899999999999999999999 9999976 58999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
+|+++.
T Consensus 88 ~~ak~~ 93 (97)
T d1whya_ 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999765
|
| >d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=8.5e-17 Score=128.99 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=73.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+...|||+|||+++|+++|+++|+.||.+..+.++.+ +.+++++|||||+|.++++|++|++ + |+..|+||.|+|.
T Consensus 14 ~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~-~~~~~~kG~afV~F~~~e~a~~a~~-~--~~~~i~gR~i~V~ 89 (104)
T d1wg5a_ 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPV-DFQGRSTGEAFVQFASQEIAEKALK-K--HKERIGHRYIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCB-CSSSCBCSEEEEEESSHHHHHHHHT-T--TTCCSSSSCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEe-CCCCCcceEEEEEeCCHHHHHHHHh-h--CCCEEcceEEEEE
Confidence 3348999999999999999999999999988767776 6789999999999999999999985 7 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++.+.
T Consensus 90 ~~~~~~ 95 (104)
T d1wg5a_ 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987664
|
| >d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=1e-16 Score=126.51 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=70.3
Q ss_pred cceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 151 EGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
+++|||+|||.+ +|+++|.++|++||.|.++++.++ +|||||+|.+.++|.+|++.+..++..++|++|+|.
T Consensus 18 ~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~~-------k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~ 90 (99)
T d1x4fa1 18 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 90 (99)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCEEEEeCCcCCccCHHHHHhhhccccceeEEEEeec-------CCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEE
Confidence 458999999985 899999999999999999999887 899999999999999999865559999999999999
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
+++.+
T Consensus 91 ~s~~~ 95 (99)
T d1x4fa1 91 LSEKY 95 (99)
T ss_dssp EECSC
T ss_pred EcCCc
Confidence 98654
|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.1e-17 Score=125.11 Aligned_cols=75 Identities=20% Similarity=0.385 Sum_probs=67.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
.++|||||||+++|+++|+++|++||.|.+|++.. +++|||||+|.+.++|++|+. +++.|+|+.|+|.+
T Consensus 5 s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~------~~~gfafV~f~~~~~a~~a~~----~~~~i~g~~l~v~~ 74 (88)
T d1wf0a_ 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK------PFRAFAFVTFADDQIAQSLCG----EDLIIKGISVHISN 74 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS------SCCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEee------ccCceEEEEECCHHHHHHHHh----CCCEECCEEeEEEe
Confidence 45999999999999999999999999999997754 358999999999999999873 89999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++++.
T Consensus 75 a~~k~ 79 (88)
T d1wf0a_ 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98775
|
| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 9 (SFRS9) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=9.1e-17 Score=126.43 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=69.7
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEe
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~ 230 (779)
..+|||+|||+++++++|+++|++||.|.+++|.+ +|||||+|.+.++|++|++.| ||..|+|+.|+|.+
T Consensus 15 ~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~--------~g~afV~f~~~~~a~~Ai~~l--ng~~~~g~~i~v~~ 84 (98)
T d1wg4a_ 15 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQK--------DGMGMVEYLRKEDMEYALRKL--DDTKFRSHEGETSY 84 (98)
T ss_dssp SCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEET--------TTEEEEEESSHHHHHHHHHHH--SSEEEECTTSCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhhcccccccccc--------cceEEEEECCHHHHHHHHHHh--CCCEeCCeEEEEEE
Confidence 34899999999999999999999999999999875 589999999999999999999 99999999999999
Q ss_pred cCCcc
Q 004006 231 DDGRR 235 (779)
Q Consensus 231 ~~~~~ 235 (779)
++.+.
T Consensus 85 ~~~~~ 89 (98)
T d1wg4a_ 85 IRVYP 89 (98)
T ss_dssp EEEEC
T ss_pred EecCC
Confidence 86654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.2e-13 Score=138.64 Aligned_cols=272 Identities=11% Similarity=0.038 Sum_probs=180.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 004006 476 CLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMG 555 (779)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 555 (779)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..+|...|++++|+..|.+.++.... +...|..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 45677889999999999999988864 336778888889999999999999999998886544 6778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004006 556 NMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD 635 (779)
Q Consensus 556 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 635 (779)
++++|.+.++.+....... ...+....... .. .+.......+..+...+.+.+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGA-GG-------------------AGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhhh-hh-------------------cccccchhhHHHHHHhhHHHHHHHHHH
Confidence 9999999999888764321 11110000000 00 000011111222334445666777776
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 004006 636 EMTLAG-ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (779)
Q Consensus 636 ~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (779)
+.+... ...+...+..+...+...|++++|+..|++++... +.+..+|..++.+|...|++++|.+.++++.+.+ +.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 665432 12345666677777777778888888887777664 3466777777777888888888888887777654 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHhcCCcchHHH
Q 004006 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQE----------GVQPDVHTYTSFINACKCSKSNQRNGR 772 (779)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----------g~~pd~~~~~~l~~a~~~~g~~~~a~~ 772 (779)
+...|..++.+|.+.|++++|++.|++.++. ........|..+-.++...|+.+.+..
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6667777788888888888888887777652 111223456666667766777665543
|
| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.2e-16 Score=128.07 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=70.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+|||+|||+++|+++|+++|+.||.|..+.++.+ ..+|+++|||||+|.+.++|++|++ + ||..|+||.|.|..+
T Consensus 9 ~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~-~~~g~~~G~afV~F~s~~~a~~Al~-~--n~~~i~gr~i~V~~~ 84 (103)
T d2cpya1 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLV-DNNGQGLGQALVQFKNEDDARKSER-L--HRKKLNGREAFVHVV 84 (103)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECC-CTTSSCSSCEEEECSSHHHHHHHGG-G--CSEEETTEEEEEEEE
T ss_pred eEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEe-CCCCCcCccEEEEECCHHHHHHHHh-c--CCCeECCcEEEEEEC
Confidence 47999999999999999999999999987555555 6789999999999999999999995 7 999999999999987
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
...
T Consensus 85 ~~~ 87 (103)
T d2cpya1 85 TLE 87 (103)
T ss_dssp CHH
T ss_pred CHH
Confidence 544
|
| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein L-like species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=3.6e-16 Score=125.12 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=72.1
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
++.+|||+|||..+|+++|.++|++||.|..+++.++ ||||||+|++.++|.+|++.+..++..++|++|+|+
T Consensus 14 ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~~-------k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~ 86 (104)
T d1wexa_ 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEEec-------ceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEE
Confidence 3459999999999999999999999999999999876 899999999999999999988557788899999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
|++.+.
T Consensus 87 ~s~~~~ 92 (104)
T d1wexa_ 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EcCCCc
Confidence 997654
|
| >d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=3.6e-16 Score=120.43 Aligned_cols=78 Identities=12% Similarity=0.205 Sum_probs=70.9
Q ss_pred ccceEEeccCCCc-CChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 150 QEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 150 ~~~~~~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
.+.+|||+|||.. +|+++|.++|++||.|.++++..+ +++|||+|++.++|.+|++.+..++..++||+|+|
T Consensus 7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~~-------k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V 79 (89)
T d1x4da1 7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 79 (89)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeecc-------ceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEE
Confidence 3458999999986 889999999999999999999887 78999999999999999998766899999999999
Q ss_pred EecCCc
Q 004006 229 KLDDGR 234 (779)
Q Consensus 229 ~~~~~~ 234 (779)
+|++..
T Consensus 80 ~~s~~~ 85 (89)
T d1x4da1 80 HLSQKY 85 (89)
T ss_dssp EEECCC
T ss_pred EECCCc
Confidence 998643
|
| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.3e-16 Score=127.29 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=71.5
Q ss_pred cccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEE
Q 004006 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (779)
Q Consensus 149 ~~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v 228 (779)
..+.+|||+|||+++|+++|+++|+.||. ..++++.+ .+|+++|||||+|.+.++|++|++ + ||..|+||.|+|
T Consensus 13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~~-~~v~~~~~--~~g~~~G~afVeF~~~~~a~~Al~-~--~~~~i~gR~I~V 86 (102)
T d1weza_ 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIG--PDGRVTGEADVEFATHEDAVAAMA-K--DKANMQHRYVEL 86 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEES--SSSCEEEEEEEECSSSHHHHHHHT-T--SSCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHhccCc-ceeeeEEe--cCCcceEEEEEEECCHHHHHHHHH-c--CCCEECCEEEEE
Confidence 34459999999999999999999999984 56888776 458999999999999999999985 7 999999999999
Q ss_pred EecCCcc
Q 004006 229 KLDDGRR 235 (779)
Q Consensus 229 ~~~~~~~ 235 (779)
.++..+.
T Consensus 87 ~~s~~~~ 93 (102)
T d1weza_ 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 9987654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.1e-13 Score=136.76 Aligned_cols=245 Identities=11% Similarity=0.001 Sum_probs=138.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
...+..+.+.|++++|+..|+++++..+. +..+|..++.+|...|++++|+..|.+..+.+ +.+...+..++..|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 34566677777777777777777776544 66677777777777777777777777777654 34556666677777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 450 GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529 (779)
Q Consensus 450 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (779)
|++++|++.++++.... |+............. ..+.......+..+...+.+.++...|
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 77777777777766542 111110000000000 000001111112223334455666666
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004006 530 EDVMRDGL-KPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCI 608 (779)
Q Consensus 530 ~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 608 (779)
.++.+... ..+..++..+...+...|++++|+..|++....... +...|..+...|.+.|++++|++.|+++++....
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence 65554322 224555666666666666666666666666655433 4455556666666666666666666666654332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 609 PTVHTFNALILGLVEKRQMEKAIEILDEMTL 639 (779)
Q Consensus 609 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 639 (779)
+...|..+..+|.+.|++++|+..|++.++
T Consensus 239 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 -YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666666666666666666553
|
| >d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.2e-16 Score=129.79 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=72.9
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
.+++|||+|||+++|+++|+++|+.||.+..+.++.+ ..+|+++|||||+|.+.++|++|+. + ||..|+||.|.|.
T Consensus 17 ~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~-~~~g~~~G~afVeF~~~e~a~~al~-~--~~~~i~gR~i~V~ 92 (112)
T d1wela1 17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQVH 92 (112)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEEE
T ss_pred CCeEEEEecCCCcCcHHHHhhHHhhccccccceeeec-CcccceeeEEEEEECCHHHHHHHHH-c--CCCcCCCEEEEEE
Confidence 3459999999999999999999999999987666665 6789999999999999999999985 7 9999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
.+..+.
T Consensus 93 ~~~~~~ 98 (112)
T d1wela1 93 PITKKG 98 (112)
T ss_dssp EECHHH
T ss_pred EcChHH
Confidence 875553
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.7e-16 Score=127.04 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=70.6
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee--eceEEEEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTVK 229 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~--~~~~~~v~ 229 (779)
.+|||+||++.+|+++|+++|++||.|.+++|+.+ + ++|||||+|.+.++|.+|+..| ||..| +|+.|+|.
T Consensus 8 ~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~-~----~~g~aFV~f~~~e~A~~Ai~~l--n~~~l~~~~~~l~v~ 80 (108)
T d2adba1 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-N----NQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 80 (108)
T ss_dssp EEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEE-T----TEEEEEEEESCHHHHHHHHHHH--HSCCSSTTCCCCEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEee-C----CCCeEEEEECCHHHHHHHHHHH--CCCEeccCCcEEEEE
Confidence 48999999999999999999999999999999876 2 4899999999999999999999 99998 58899999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+++...
T Consensus 81 ~s~~~~ 86 (108)
T d2adba1 81 FSKLTS 86 (108)
T ss_dssp ECSSCS
T ss_pred ecCCcc
Confidence 987654
|
| >d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Calcipressin-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=4.6e-16 Score=123.40 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=69.9
Q ss_pred ccceEEeccCCCcCCh-----HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeece
Q 004006 150 QEGKIFVGNLPNWIKK-----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~ 224 (779)
.+.+|||+||+.++.. ++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| ||..|+|+
T Consensus 4 ~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k~-------~~~afV~f~~~~~A~~Ai~~l--ng~~~~g~ 74 (104)
T d1weya_ 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRL--HKTEFLGK 74 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTS--TTSEETTE
T ss_pred CCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEecC-------CCEEEEEECCHHHHHHHHHHh--cccccCCC
Confidence 3469999999998743 458899999999999999876 899999999999999999999 99999999
Q ss_pred EEEEEecCCcch
Q 004006 225 VLTVKLDDGRRL 236 (779)
Q Consensus 225 ~~~v~~~~~~~~ 236 (779)
+|+|.|++++..
T Consensus 75 ~l~v~~a~~~~~ 86 (104)
T d1weya_ 75 EMKLYFAQTLHI 86 (104)
T ss_dssp ECEEECCCCSSC
T ss_pred EeEEeecccCCC
Confidence 999999977643
|
| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.3e-17 Score=126.99 Aligned_cols=77 Identities=22% Similarity=0.469 Sum_probs=68.1
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEec-----CCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEE
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK-----GYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~ 226 (779)
++|||||||+++|+++|+++|++||.+..+.+.. + ..+++++|||||+|.+.++|.+|++ | ||..+.|++|
T Consensus 2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~-~~~~~~kg~afV~f~~~e~a~~a~~-l--~g~~~~Gr~l 77 (90)
T d1u2fa_ 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA-VQINQDKNFAFLEFRSVDETTQAMA-F--DGIIFQGQSL 77 (90)
T ss_dssp CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEE-CCEETTTTEEEEEESSCTTTTTGGG-G--SSCCSSSSCC
T ss_pred CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeee-cccCCCceEEEEEeCCHHHHHHHHh-h--CCcEECCEEE
Confidence 4899999999999999999999999987766543 3 4678999999999999999999985 8 9999999999
Q ss_pred EEEecC
Q 004006 227 TVKLDD 232 (779)
Q Consensus 227 ~v~~~~ 232 (779)
+|+.++
T Consensus 78 ~V~r~k 83 (90)
T d1u2fa_ 78 KIRRPH 83 (90)
T ss_dssp CCBCTT
T ss_pred EECCCC
Confidence 997543
|
| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Splicing factor U2AF subunits domain: U2AF35 (35 KDa subunit) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.2e-16 Score=122.25 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=71.0
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.++|+++..++++++|+++|++||.|.+|+|+++ .+|+++|||||+|.+.++|.+|++.| ||..++||+|+|++.
T Consensus 29 ~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~--~~~~~~G~~fV~f~~~~~A~~Ai~~l--ng~~~~gr~i~v~~s 103 (104)
T d1jmta_ 29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN--LGDHLVGNVYVKFRREEDAEKAVIDL--NNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS--SSSSSEEEEEEEESCHHHHHHHHHHH--TTCEETTEECCEEEC
T ss_pred hHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecC--CCCCEeeEEEEEEechhHHHHHHHHH--CCCEECCEEEEEEEC
Confidence 6889999999999999999999999999999865 58999999999999999999999999 999999999999975
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.4e-14 Score=131.09 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=76.6
Q ss_pred ccceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEE
Q 004006 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (779)
Q Consensus 150 ~~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~ 229 (779)
..++|||+|||+.+|+++|+++|+.||.|..+.|+.| +.+|+++|||||+|.+.++|.+|++ + ++..++|+.|+|.
T Consensus 96 ~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~-~~~~~~~g~~fV~f~~~e~A~~Al~-~--~~~~~~G~~i~V~ 171 (183)
T d1u1qa_ 96 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVI-Q--KYHTVNGHNCEVR 171 (183)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHT-S--SCEEETTEEEEEE
T ss_pred ccceeEEccCCCcCCHHHHhhhhccCCceeeeeeecc-cccCccceeEEEEECCHHHHHHHHH-h--CCCeECCEEEEEE
Confidence 3459999999999999999999999999999999999 8899999999999999999999996 5 8999999999999
Q ss_pred ecCCcc
Q 004006 230 LDDGRR 235 (779)
Q Consensus 230 ~~~~~~ 235 (779)
+|.++.
T Consensus 172 ~A~~k~ 177 (183)
T d1u1qa_ 172 KALSKQ 177 (183)
T ss_dssp ECCCHH
T ss_pred ecCCcc
Confidence 998773
|
| >d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.8e-14 Score=114.71 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=65.1
Q ss_pred eEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCH-HHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP-AAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 153 ~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~-~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
.+||||||..+|+++|+++|++||.|.+|+|+++ +|||||.|.+. ++|..|+..+ ||..+.++.+.|.++
T Consensus 13 ~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~~-------kg~gfV~F~~~~~~A~~a~~~~--~~~~l~~~~~~v~~~ 83 (113)
T d1owxa_ 13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-------AKEGIILFKEKAKEALGKAKDA--NNGNLQLRNKEVTWE 83 (113)
T ss_dssp EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-------CSEEEEEESSCHHHHHHHHHHT--TTSCBCTTSSSEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCChheEEEecC-------CceEEEEecCcHHHHHHHHHHh--cCCceecCceEEEEe
Confidence 5599999999999999999999999999999987 89999999986 6788999999 999998887777776
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
...
T Consensus 84 ~~~ 86 (113)
T d1owxa_ 84 VLE 86 (113)
T ss_dssp ECC
T ss_pred ecc
Confidence 443
|
| >d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Alkylation repair AlkB homolog 8, ALKBH8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.8e-14 Score=110.17 Aligned_cols=63 Identities=17% Similarity=0.370 Sum_probs=58.1
Q ss_pred ccceEEe--ccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCcee
Q 004006 150 QEGKIFV--GNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (779)
Q Consensus 150 ~~~~~~v--~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~ 221 (779)
++.++|| |||+.++|+++|+++|++||.|+.+++..+ +|||||+|.+.++|.+|+..| ||..+
T Consensus 17 pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~~-------k~~aFV~f~~~e~A~~A~~~l--ng~~i 81 (101)
T d2cq2a1 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEV 81 (101)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHHHHHT--TTCEE
T ss_pred CCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeeccC-------ccEEEEEECCHHHHHHHHHHh--CCCCC
Confidence 3458888 559999999999999999999999999877 899999999999999999999 99987
|
| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleoporin 35 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=1.7e-13 Score=102.10 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=62.6
Q ss_pred cceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceE-EEEE
Q 004006 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV-LTVK 229 (779)
Q Consensus 151 ~~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~-~~v~ 229 (779)
.+.|||+++|++++++.| +.|++||.|.++++.++ +|||||+|.++++|++|++ + ||..|+|+. |.|.
T Consensus 4 ~~wV~V~G~p~~~~~~il-~~F~~~G~I~~~~~~~~-------~~~~fV~f~~~~~A~~Al~-~--nG~~~~g~~~vgV~ 72 (81)
T d1wwha1 4 DTWVTVFGFPQASASYIL-LQFAQYGNILKHVMSNT-------GNWMHIRYQSKLQARKALS-K--DGRIFGESIMIGVK 72 (81)
T ss_dssp GGEEEEECCCGGGHHHHH-HHHHTTSCEEEEEECSS-------SSEEEEEESSHHHHHHHHT-T--TTCEETTTEECEEE
T ss_pred ccEEEEECCChHHHHHHH-HHHHhhhhhheEEecCC-------CCEEEEEEcccHHHHHHHh-c--CCCeECCcEEEEEE
Confidence 458999999999997666 47999999999988655 8999999999999999995 7 999999985 5687
Q ss_pred ecCCc
Q 004006 230 LDDGR 234 (779)
Q Consensus 230 ~~~~~ 234 (779)
...++
T Consensus 73 ~~~~k 77 (81)
T d1wwha1 73 PCIDK 77 (81)
T ss_dssp ECCCH
T ss_pred eCCCh
Confidence 76554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.5e-11 Score=118.84 Aligned_cols=182 Identities=9% Similarity=0.065 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD-MHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (779)
+.|...|+++++.+|. +...|+....++...|+ +++|+..++.+++.... +..+|+.+..++.
T Consensus 60 ~~Al~~~~~ai~lnP~---------------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 60 ERAFKLTRDAIELNAA---------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---------------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 7777777777777776 55556667777766653 77777777777776433 6677777777777
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------
Q 004006 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN------ 416 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 416 (779)
+.|++++|++.++++++.... +...|..++.++.+.|++++|++.|+++++.++. +..+|+.+..++.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 777777777777777776432 6777777777777777777777777777777554 66677766666655544
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 417 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
+++|++.+.++++.+ +.+...|+.+...+...| .+++...++...+.
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 456666666666654 445566665555444333 35555555555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.4e-10 Score=114.45 Aligned_cols=217 Identities=8% Similarity=0.010 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (779)
...|+.+...+.+.+.+++|+++++++++.+.. +..+|+....++...| ++++|++.+++.++.... +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 345777888889999999999999999998543 6678899999988876 599999999999987543 7999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---
Q 004006 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN--- 451 (779)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 451 (779)
.+.+.|++++|++.|+++.+..+. +..+|..++.++.+.|++++|++.++++++.+ +.+...|+.+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 999999999999999999998766 89999999999999999999999999999986 5577888888777776665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 004006 452 ---EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK-HNMKTYSMLINGFLK 518 (779)
Q Consensus 452 ---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~ 518 (779)
+++|++.+.++++.... +...|+.+...+... ..+++.+.++...+.... .+...+..++..|..
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 67888888888876432 677777776665544 457777777777654322 245566666666543
|
| >d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: HIV Tat-specific factor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7e-13 Score=103.95 Aligned_cols=80 Identities=24% Similarity=0.411 Sum_probs=68.3
Q ss_pred cccceEEeccC--CCcCC---------hHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhC
Q 004006 149 RQEGKIFVGNL--PNWIK---------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (779)
Q Consensus 149 ~~~~~~~v~~l--~~~~~---------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (779)
.....|+|.|+ +.++. .++|++.|++||.|..|++..+ +.+||+||+|.+.++|.+|+..| |
T Consensus 6 ~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~-----~~~G~~fV~f~~~e~A~~A~~~l--n 78 (99)
T d2dita1 6 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-----HPDGVASVSFRDPEEADYCIQTL--D 78 (99)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-----CTTCEEEEECSCHHHHHHHHHHS--T
T ss_pred CCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCC-----CCccEEEEEECCHHHHHHHHHHh--C
Confidence 34459999999 55432 2578999999999999988765 34799999999999999999999 9
Q ss_pred CceeeceEEEEEecCCcc
Q 004006 218 GVEFHGRVLTVKLDDGRR 235 (779)
Q Consensus 218 g~~~~~~~~~v~~~~~~~ 235 (779)
|..++||+|+|++..++.
T Consensus 79 g~~~~gr~i~v~~~~g~~ 96 (99)
T d2dita1 79 GRWFGGRQITAQAWDGTT 96 (99)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CcEECCEEEEEEEeCCcC
Confidence 999999999999987764
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.9e-12 Score=116.80 Aligned_cols=79 Identities=28% Similarity=0.492 Sum_probs=72.3
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEec
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~ 231 (779)
++|||||||+.+|+++|+++|++||.|.+++++++ ..+|+++|||||+|.+.++|.+|+.. ++..++++.+.+...
T Consensus 7 r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~~~~~~~~~~~~ 82 (183)
T d1u1qa_ 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEPKRA 82 (183)
T ss_dssp HEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHT---CSCEETTEECEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeec-ccCCCccCceecccCCHHHHHHHHHh---cCCcccccchhhhhh
Confidence 49999999999999999999999999999999999 88999999999999999999999976 588888888888765
Q ss_pred CCc
Q 004006 232 DGR 234 (779)
Q Consensus 232 ~~~ 234 (779)
..+
T Consensus 83 ~~~ 85 (183)
T d1u1qa_ 83 VSR 85 (183)
T ss_dssp CCT
T ss_pred hhc
Confidence 444
|
| >d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3.6e-12 Score=101.12 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=67.7
Q ss_pred cceEEeccC--CCcCC--------hHHHHHHHhccCCeeEEEEecCCCCC--CCCcceEEEEeCCHHHHHHHHHHhhhCC
Q 004006 151 EGKIFVGNL--PNWIK--------KHLVMEFFRQFGPIKNVILIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (779)
Q Consensus 151 ~~~~~v~~l--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~g 218 (779)
+..|.+.|+ +.++. .+||++.|++||.|.+|.|.++ ..+ ....|++||+|.+.++|.+|+..| ||
T Consensus 4 s~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~-~~~~~~~~~g~vfV~f~~~e~A~~A~~~l--~G 80 (104)
T d1o0pa_ 4 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGL--TG 80 (104)
T ss_dssp CSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCC-TTSSSCTTCCEEEEEESCHHHHHHHHHHH--SS
T ss_pred CcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeec-CCCCccCCceEEEEEECCHHHHHHHHHHH--CC
Confidence 458899999 44332 3578999999999999999886 443 344699999999999999999999 99
Q ss_pred ceeeceEEEEEecCCc
Q 004006 219 VEFHGRVLTVKLDDGR 234 (779)
Q Consensus 219 ~~~~~~~~~v~~~~~~ 234 (779)
..++||.|+|.+....
T Consensus 81 r~f~gR~v~v~f~~~~ 96 (104)
T d1o0pa_ 81 RKFANRVVVTKYCDPD 96 (104)
T ss_dssp CCSSSSCCEEEEECHH
T ss_pred CEECCeEEEEEEcCHH
Confidence 9999999999998644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=1.9e-09 Score=106.06 Aligned_cols=187 Identities=12% Similarity=0.109 Sum_probs=123.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 004006 311 DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFE 390 (779)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (779)
..++|..+|++.++.....+...|...+..+.+.|++++|..+|+++++........+|...+..+.+.|++++|+++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45777788888776533445567777777777888888888888888775433234567777788888888888888888
Q ss_pred HHHHcCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 004006 391 EAKERHATLNAIIYGNIIYA-QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG-FS 468 (779)
Q Consensus 391 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~ 468 (779)
++.+.... +...|...+.. +...|+.+.|..+|+.+.+.. +.+...|...++.+...|+++.|..+|++..... ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 87776543 44444444433 334567777777777777652 4456667777777777777777777777766542 22
Q ss_pred CC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 469 PS--IISYGCLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 469 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 33566666666666777777777666654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=4.5e-11 Score=119.92 Aligned_cols=269 Identities=7% Similarity=-0.048 Sum_probs=192.2
Q ss_pred hHHHHHHHHHHhcCCccHHH---HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 004006 264 EWHRREFRKAVETQPENWQA---VVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA 340 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 340 (779)
+.|+++|.+++..+|+.+.. .-..+.. ...+...+...|++++|+.+++.+.+.+.. +...|..+..+
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~--------l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~ 116 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQH--------LETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------HHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--------HhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHH
Confidence 78999999999999985322 1111111 111223455667789999999999987533 77788888877
Q ss_pred HHccC--ChHHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004006 341 YAVGR--DMEEALSCVRKMKEEGIEMSLVTYS-IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNM 417 (779)
Q Consensus 341 ~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (779)
+...+ ++++|+..++++++.... +...+. .+...+...+.+++|+..++++.+.++. +..+|+.+..++.+.|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCH
Confidence 77665 589999999999887533 566554 4557778889999999999999998765 889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004006 418 ERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (779)
Q Consensus 418 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (779)
++|...+....+.. .....++..+...+..+++...+.+...... .+...+..++..+...|+.++|...+.+.
T Consensus 195 ~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPENVL-----LKELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHHHH-----HHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhH-----HHHHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88876665444431 1112234445666777778888887776543 24556667778888888999999988887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004006 498 KSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAF 551 (779)
Q Consensus 498 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 551 (779)
...+ +.+..++..+..+|...|++++|++.|+++.+..+. +...|+.|...+
T Consensus 269 ~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~ 320 (334)
T d1dcea1 269 EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKF 320 (334)
T ss_dssp CTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred HhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHH
Confidence 7653 224567777888888889999999999988886332 344555554444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=4.8e-09 Score=105.73 Aligned_cols=271 Identities=11% Similarity=0.032 Sum_probs=181.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHcCC--C---CCHhHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI--E---MSLVTY 369 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~---~~~~~~ 369 (779)
.......+...|++++|+.+|++.++.....+ ..+++.+..+|...|++++|+..|++.++... . .....+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 44456778899999999999999988632222 23677788899999999999999998865321 1 123456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcC----CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CChhh
Q 004006 370 SIIVGGFAKMGNAEAADHWFEEAKERH----ATL---NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID----APIDI 438 (779)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ 438 (779)
..+...+...|++..+...+.+..... ... ....+..+...+...|+++.+...+......... .....
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 777788889999999999888776421 111 1235566777888889999999888888764321 12334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 004006 439 YHMMMDGYTIIGNEEKCLIVFERLKEC----GFSP--SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH---NMKTY 509 (779)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~ 509 (779)
+..+...+...++...+...+.+.... +..+ ....+..+...+...|+.++|...++......... ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 555667777888888888877766542 1111 12345556667778888888888877765432211 23455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004006 510 SMLINGFLKLKDWANVFAVFEDVMRD----GLKPD-VVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (779)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 569 (779)
..+..+|...|++++|...++++... +..++ ...+..+..+|.+.|++++|.+.|++...
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56777788888888888888776532 22222 23556666777777777777777776544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.8e-08 Score=101.36 Aligned_cols=190 Identities=9% Similarity=0.010 Sum_probs=94.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHH
Q 004006 582 IIHGFARAGEMKRALEIFDMMRRSGC----IPTVHTFNALILGLVEKRQMEKAIEILDEMTLA--GISPN----EHTYTT 651 (779)
Q Consensus 582 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~----~~~~~~ 651 (779)
+...+...|+++.+...+........ ......+..+...+...+++.++...+.+.... ..... ...+..
T Consensus 139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (366)
T d1hz4a_ 139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 218 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 33444555555555555555443211 112233344444455555555555555544321 00111 123344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHH
Q 004006 652 IMHGYASLGDTGKAFEYFTKLRNEGLE---LDVFTYEALLKACCKSGRMQSALAVTKEMSA----QKIPR-NTFVYNILI 723 (779)
Q Consensus 652 li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~ 723 (779)
+...+...|++++|...+++....... .....+..+..++...|++++|...++++.. .+..+ ....+..+.
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence 445556666666666666665543221 1233445566666667777777666666542 12112 233556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCC----CCHHHHHHHHHHHHhcCCcchHH
Q 004006 724 DGWARRGDVWEAADLMQQMKQE----GVQ----PDVHTYTSFINACKCSKSNQRNG 771 (779)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~~----g~~----pd~~~~~~l~~a~~~~g~~~~a~ 771 (779)
.+|.+.|++++|.+.+++.++. |.. -....+..++..+...+..+++.
T Consensus 299 ~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 7777777777777777665432 221 11223444555566666665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=4.8e-11 Score=119.71 Aligned_cols=258 Identities=5% Similarity=-0.110 Sum_probs=155.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----------ccCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA----------VGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (779)
+......+..++|+++++++++.+.. +...|+..-..+. ..|++++|+.+++..++... -+...|..+
T Consensus 36 ~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~ 113 (334)
T d1dcea1 36 FQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHR 113 (334)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHh
Confidence 33333334458999999999887422 3345544333322 23446788888888877643 367777777
Q ss_pred HHHHHccCC--HHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 373 VGGFAKMGN--AEAADHWFEEAKERHATLNAIIY-GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 373 ~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
..++...++ +++|+..++++.+.... +...+ ..+..++...+..++|+..++.+.+.+ +.+..+|+.+..++...
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 191 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHH
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 777776654 77888888888776544 44444 344566667788888888887777765 45667777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 450 GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529 (779)
Q Consensus 450 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (779)
|++++|...+.+..+. . .....++..+...+..+++...+....... ..+...+..+...+...+++++|...+
T Consensus 192 ~~~~~A~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 192 HPQPDSGPQGRLPENV----L-LKELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp SCCCCSSSCCSSCHHH----H-HHHHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHh----H-HHHHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777665554443332 0 011123334455566666666666665543 223344445555556666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004006 530 EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 530 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 571 (779)
.+..+..+. +...+..+..++...|+.++|++.|+++++..
T Consensus 266 ~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 266 QELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 665544222 33455556666666666666666666666653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.4e-09 Score=104.32 Aligned_cols=153 Identities=11% Similarity=-0.030 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 004006 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (779)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (779)
+.+...+++++......=.. ....|..+..+|.+.|++++|+..|++.++... .+..+|+.+..+|.+
T Consensus 16 e~al~~~~e~l~~~~~~~~~-----------~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~ 83 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDE-----------RAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQ 83 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHH
Confidence 67777788887654321000 234677788999999999999999999998753 377889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (779)
.|++++|++.|+++++.... +..++..++.+|...|++++|+..|++..+..+. +......+..++.+.+..+.+..+
T Consensus 84 ~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (259)
T d1xnfa_ 84 AGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVL 161 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999987533 5778888999999999999999999999887543 555555555666666666666666
Q ss_pred HHHHHHc
Q 004006 424 VRDMEEE 430 (779)
Q Consensus 424 ~~~~~~~ 430 (779)
.......
T Consensus 162 ~~~~~~~ 168 (259)
T d1xnfa_ 162 KQHFEKS 168 (259)
T ss_dssp HHHHHHS
T ss_pred HHHhhcc
Confidence 5555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=5.6e-09 Score=102.69 Aligned_cols=219 Identities=8% Similarity=0.037 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc--------------CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 313 HRARQTFENMRARGIEPTLHVYTNLIHAYAVG--------------RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
+.+..+|++++..- ..+...|...+..+... +..++|.++|++.++...+-+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34555666666542 22455555555443221 2335566666666554333345556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG-YTIIGNEEKCLI 457 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~ 457 (779)
.|++++|..+|++++.........+|...+..+.+.|++++|.++|+++.+.+ +.+...|...... +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 66666666666666654333223355666666666666666666666665543 2223333333322 233455566666
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004006 458 VFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG-IKH--NMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (779)
Q Consensus 458 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (779)
+|+.+.+.. ..+...|...++.+.+.|+.+.|..+|++..... ..+ ....|...+..-...|+.+.+..+++++.+
T Consensus 191 i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666555531 2244555555555555566666666665555432 121 133455555544555555555555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.5e-09 Score=104.07 Aligned_cols=118 Identities=12% Similarity=-0.090 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 004006 311 DMHRARQTFENMRARGIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (779)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (779)
+.+.++.-++++....... ...+|..+..+|.+.|++++|++.|++.++... -+..+|..++.+|.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhh
Confidence 3445555555555432110 112444555555566666666666666655432 245555566666666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
.|+++.+..+. +..++..++.+|...|++++|++.|++..+.
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66666555433 4445555555555555555555555555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=2e-07 Score=90.28 Aligned_cols=129 Identities=12% Similarity=0.051 Sum_probs=70.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC----CCC-CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-----CCHhHHH
Q 004006 301 LMVNYYARRGDMHRARQTFENMRARG----IEP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-----MSLVTYS 370 (779)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~~~~ 370 (779)
...+.|...|++++|+..|+++.+.. -.+ ...+|+.+..+|.+.|++++|.+.+++.++.-.. ....++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 34567778888888888888876531 011 1246777777777778888887777765542100 0123444
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004006 371 IIVGGFA-KMGNAEAADHWFEEAKERHAT-----LNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (779)
Q Consensus 371 ~l~~~~~-~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 429 (779)
.++..|. ..|++++|++.|+++.+.... ....++..++.+|...|++++|+++|+++..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 4454443 346666666666665432100 0122344445555555555555555555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=3e-07 Score=82.40 Aligned_cols=118 Identities=13% Similarity=0.005 Sum_probs=53.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004006 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (779)
..|++++|++.|+++. +++..+|..++.+|.+.|++++|++.|+++++.+.. +...|..++.+|.+.|++++|++
T Consensus 17 ~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 17 DKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHHH
Confidence 3444444444444321 223444444444444444444444444444444332 34444444444444444444444
Q ss_pred HHHHHHHcCCC--------------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 423 LVRDMEEEGID--------------A-PIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (779)
Q Consensus 423 ~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (779)
.|++....... . ...++..+..+|.+.|++++|.+.|....+.
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44444332100 0 0123444555566666666666666665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.70 E-value=2e-05 Score=74.60 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 004006 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (779)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (779)
+..+..|...+.+.|++++|++.|++..+.| +...+..|...|.. ..++..|...++...+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455667777777888888888888887765 56666666777665 457777777777776654 4444444
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHHcC
Q 004006 372 IVGGFAK----MGNAEAADHWFEEAKERH 396 (779)
Q Consensus 372 l~~~~~~----~g~~~~A~~~~~~~~~~~ 396 (779)
|...+.. ..+.+.|...|+...+.+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccccchhhHHHHHHHhhhhhhh
Confidence 5444433 345666777777666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=6.2e-07 Score=80.26 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=60.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 004006 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (779)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (779)
..+...|++++|++.|+++. .++..+|..+..+|...|++++|++.|++.++.+.. +...|..+..+|.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence 34445555555555554321 234444555555555555555555555555554322 3445555555555555555
Q ss_pred HHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 384 AADHWFEEAKERHATL---------------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 384 ~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
+|+..|++........ ...++..+..+|.+.|++++|.+.|....+..
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5555555544321100 01334455555555566666655555555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=4e-07 Score=73.88 Aligned_cols=103 Identities=19% Similarity=0.111 Sum_probs=68.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (779)
..+.+.+.|++++|+.+|+++++... .+...|..+..+|.+.|++++|+..+++.++.+. .+...|..++.+|...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccC
Confidence 45666777777777777777776642 2556677777777777777777777777776643 366677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 382 AEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
+++|+..|+++.+..+. +...+..+
T Consensus 87 ~~~A~~~~~~a~~~~p~-~~~~~~~l 111 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEAN-NPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 77777777777765433 44444333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.65 E-value=4.2e-05 Score=72.26 Aligned_cols=223 Identities=12% Similarity=-0.026 Sum_probs=122.9
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 004006 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGN 406 (779)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (779)
...+..|...+.+.+++++|+++|++..+.| +...+..|..+|.. ..+...|..++......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3455566666677788888888888877765 56666667777765 457777777777776654 3444445
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004006 407 IIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT----IIGNEEKCLIVFERLKECGFSPSIISYGCLI 478 (779)
Q Consensus 407 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 478 (779)
+...+.. ..+.+.|...++...+.|. ......+...+. .......+...+......+ +...+..|.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 5444443 4556677777777666542 222223332332 2334555555555555432 445555555
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004006 479 NLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRA 550 (779)
Q Consensus 479 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 550 (779)
..|.. ..+...+...++...+.| +...+..|...|.. ..++++|+.+|.+..+.| +...+..|..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 55554 234455555555555543 34444444444443 345666666666655543 33444445444
Q ss_pred HHh----CCCHHHHHHHHHHHHHcC
Q 004006 551 FCG----MGNMDRAIHIVKEMQKER 571 (779)
Q Consensus 551 ~~~----~g~~~~A~~~~~~~~~~~ 571 (779)
|.+ ..+.++|.++|++....|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 443 224555555555555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=5.8e-07 Score=86.91 Aligned_cols=162 Identities=14% Similarity=-0.024 Sum_probs=84.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----ChhhHHHH
Q 004006 338 IHAYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-----NAIIYGNI 407 (779)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l 407 (779)
..+|...|++++|.+.|.+..+. +-.+ -..+|..++.+|.+.|++++|++.|++..+..... ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45677788888888888877652 1111 13567777888888888888888877765531110 12344444
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHH
Q 004006 408 IYAQC-QTRNMERAEALVRDMEEE----GIDA-PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI------ISYG 475 (779)
Q Consensus 408 ~~~~~-~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~------~~~~ 475 (779)
+.+|. ..|++++|++.+.+..+. +... ...++..+...|...|++++|+..|+++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 44443 346666666666555432 1000 1223444555555555555555555555443211110 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 004006 476 CLINLYTKIGKVSKALEVSKVMKS 499 (779)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~ 499 (779)
.++..+...|+++.|...+++..+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344445555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=5.6e-07 Score=77.94 Aligned_cols=106 Identities=15% Similarity=0.032 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
+....+.|.+.|++++|+..|+++++.+. .+...|..+..+|...|++++|+..|++.++... -+..+|..++.+|..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHH
Confidence 33456677778888888888888777653 2666777777777777888888888887777642 256777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNI 407 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (779)
.|++++|+..|+++.+..+. +...+..+
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~-~~~~~~~l 118 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPH-DKDAKMKY 118 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 78888887777777776433 44444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=7e-07 Score=72.43 Aligned_cols=92 Identities=15% Similarity=0.037 Sum_probs=59.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004006 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (779)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (779)
..+.+.+.|++++|+.+|++.++... -+...|..+..+|.+.|++++|+..|+++.+.++. +...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 34555666677777777766666542 25666666666666666666666666666666544 56666666666666666
Q ss_pred hHHHHHHHHHHHHc
Q 004006 417 MERAEALVRDMEEE 430 (779)
Q Consensus 417 ~~~A~~~~~~~~~~ 430 (779)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=7.9e-07 Score=76.92 Aligned_cols=104 Identities=12% Similarity=-0.061 Sum_probs=77.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415 (779)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (779)
...+.|.+.|++++|+..|++.++.+. -+...|..+..+|...|++++|+..|+++++..+. +..+|..++.+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence 345567788888888888888887753 36778888888888888888888888888877544 6677888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHH
Q 004006 416 NMERAEALVRDMEEEGIDAPIDIYHMM 442 (779)
Q Consensus 416 ~~~~A~~~~~~~~~~~~~~~~~~~~~l 442 (779)
++++|++.+++....+ +.+...+..+
T Consensus 93 ~~~eA~~~~~~a~~~~-p~~~~~~~~l 118 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK-PHDKDAKMKY 118 (159)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 8888888888887764 3334444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=3.1e-07 Score=83.40 Aligned_cols=100 Identities=19% Similarity=0.061 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004006 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (779)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (779)
|+...+....+.|.+.|++++|+..|+++++... .+...|+.+..+|.+.|++++|+..|++.++... -+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence 4555566667777777777777777777766642 2556677777777777777777777777766432 2466667777
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 004006 374 GGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
.+|.+.|++++|+..|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 7777777777777777766553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=4.1e-07 Score=82.56 Aligned_cols=100 Identities=18% Similarity=0.086 Sum_probs=75.2
Q ss_pred CCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004006 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408 (779)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 408 (779)
|+...+....+.|.+.|++++|+..|++.++... -+...|..++.+|.+.|++++|+..|+++++..+. +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 4555666677778888888888888888777643 36777888888888888888888888888776544 667778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 004006 409 YAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
.+|.+.|++++|+..|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888776653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.36 E-value=1.7e-06 Score=69.29 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=32.9
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004006 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (779)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (779)
.+.|++++|+..|++.++.... +...|..++.+|.+.|++++|+..|+++.+.++. +..+|..++.+|...|++++|+
T Consensus 27 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~A~ 104 (112)
T d1hxia_ 27 LKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAAL 104 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHHHH
Confidence 3334444444444444333211 3344444444444444444444444444443322 3334444444444444444444
Q ss_pred HHHH
Q 004006 422 ALVR 425 (779)
Q Consensus 422 ~~~~ 425 (779)
+.|+
T Consensus 105 ~~l~ 108 (112)
T d1hxia_ 105 ASLR 108 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.35 E-value=2e-06 Score=68.96 Aligned_cols=91 Identities=12% Similarity=0.013 Sum_probs=60.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004006 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (779)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (779)
..++..+.+.|++++|+..|+++.+..+. +..+|..++.++.+.|++++|+..|++..+.+ +.+..+|..+...|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 34555666677777777777777766544 56667777777777777777777777766654 44556666666666666
Q ss_pred CCHHHHHHHHHHH
Q 004006 450 GNEEKCLIVFERL 462 (779)
Q Consensus 450 g~~~~a~~~~~~~ 462 (779)
|++++|++.|++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6666666666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2.8e-07 Score=96.55 Aligned_cols=227 Identities=6% Similarity=-0.111 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHc
Q 004006 265 WHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAV 343 (779)
Q Consensus 265 ~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~ 343 (779)
+|.+.|++++..+|+ ....|..+..+|...|++++| |++++..+ |+.. .++ +...+.
T Consensus 4 eA~q~~~qA~~l~p~---------------~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~-~e~~Lw- 61 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD---------------MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKK-VEQDLW- 61 (497)
T ss_dssp HHHHHHHHHHHHHGG---------------GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHT-HHHHHH-
T ss_pred HHHHHHHHHHHcCCC---------------CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHh-HHHHHH-
Confidence 688999999988875 223344466677777777765 66666542 2211 111 111111
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004006 344 GRDMEEALSCVRKMKEEGIEMSLVTYS--IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (779)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (779)
...+..+.+.++...+..-.++..-.. .+...+...+.++.|+..|.+.....+. +...+..+...+.+.|+.++|.
T Consensus 62 ~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~-~~~~~~~lg~~~~~~~~~~~A~ 140 (497)
T d1ya0a1 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP-CRVKSSQLGIISNKQTHTSAIV 140 (497)
T ss_dssp HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC------------------------------
T ss_pred HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChh-hHHHHHHhHHHHHhCCCHHHHH
Confidence 122455666676666543222222111 1122222345556666555554443322 5667778888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004006 422 ALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG 501 (779)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (779)
..+....... ...++..+.+.+...|++++|+..|.+..+.... +...|+.|..+|...|+..+|...|.+.....
T Consensus 141 ~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 141 KPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp --CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8777665532 1345677888888899999999999988876432 56788899999999999999999888888764
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 004006 502 IKHNMKTYSMLINGFLKL 519 (779)
Q Consensus 502 ~~~~~~~~~~ll~~~~~~ 519 (779)
.|-..++..|...|.+.
T Consensus 217 -~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 217 -FPFPAASTNLQKALSKA 233 (497)
T ss_dssp -BCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHh
Confidence 45677777777776543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=0.0015 Score=62.34 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 004006 659 LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699 (779)
Q Consensus 659 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (779)
.+++.-...+++...+.+ +..+.++|.+.|...++++.
T Consensus 261 ~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 261 VKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp TTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred cCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHH
Confidence 334444444444444333 23455555555555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.8e-05 Score=68.78 Aligned_cols=126 Identities=12% Similarity=-0.046 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
+....+.|.+.|++++|+..|++.+........ ....-......+ ...+|+.+..+|.+
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~k 74 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHHh
Confidence 445678899999999999999998865211000 000000111111 12245556666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT 447 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (779)
.|++++|+..++++++.++. +..+|..++.+|...|++++|+..|++..+.+ +.+..+...+..+..
T Consensus 75 ~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 75 LQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77777777777777766544 66667777777777777777777777776653 234444444444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=0.0012 Score=63.08 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004006 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (779)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (779)
..++..+-+.+++.-...+++.....+ +..+.++|...|...++++.-.+.+
T Consensus 252 ~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 252 TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 345666777888888888888877654 5578999999999999976655444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=2.1e-05 Score=68.28 Aligned_cols=133 Identities=8% Similarity=-0.089 Sum_probs=89.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+......+.+.|++++|+..|.+.++.-.. +.. ....-......+ ...+|..+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~-~~~-------------~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEY-ESS-------------FSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CCC-------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-ccc-------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 3444556667777777777777777653110 000 000000111111 1246778899999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS 488 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 488 (779)
+.|++++|+..+++.++.+ +.+..+|..+..+|...|++++|+..|++..+.... +..+...+..+..+.+...
T Consensus 74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985 568899999999999999999999999999986432 5555555555554444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=4.2e-06 Score=67.84 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 004006 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRN-TFVYNILIDG 725 (779)
Q Consensus 650 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 725 (779)
..+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ +++|+.+++++...+-.++ ...|..|+.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456666777777788888888777776 4567777777777776544 4457777777766441122 2356677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004006 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFI 758 (779)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~ 758 (779)
|.+.|++++|++.|+++++ +.|+..-...+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 8888888888888888877 456644433333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=6.6e-06 Score=66.63 Aligned_cols=93 Identities=12% Similarity=0.024 Sum_probs=43.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 004006 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN---AEAADHWFEEAKERHATLN-AIIYGNIIYAQC 412 (779)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 412 (779)
+++.+...+++++|.+.|++.+..+. .+..++..++.++.+.++ +++|+.+|+++...+..++ ..+|..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 44444445555555555555555432 244555555555544332 2335555555544332221 124445555555
Q ss_pred hcCChHHHHHHHHHHHHc
Q 004006 413 QTRNMERAEALVRDMEEE 430 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~ 430 (779)
+.|++++|++.|+++.+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 555555555555555553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=3.3e-05 Score=65.68 Aligned_cols=126 Identities=12% Similarity=0.023 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
+....+.+.+.|++.+|+..|.+++..-.. .. ... +.... ..... ....+|+.++.+|.+
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~--~~-----------~~~-~~~~~--~~~~~----~~~~~~~Nla~~~~~ 79 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIH--TE-----------EWD-DQILL--DKKKN----IEISCNLNLATCYNK 79 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CT-----------TCC-CHHHH--HHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--hh-----------hhh-hHHHH--Hhhhh----HHHHHHhhHHHHHHH
Confidence 444678888999999999999998864111 00 000 00000 11111 123467778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (779)
.|++++|++.++++++.++. +..+|..++.+|...|++++|+..|++..+.+ +.+..+...+-.+.
T Consensus 80 l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 80 NKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 145 (153)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred hcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 88888888888888877654 77888888888888888888888888888764 33455555444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.03 E-value=7.6e-05 Score=63.30 Aligned_cols=124 Identities=13% Similarity=0.026 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (779)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (779)
...+......+++.|++.+|+..|.+++..-.... ...-.........+ ...+|..+..+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~~~~~~~~~~~~-------~~~~~~Nla~~ 76 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWDDQILLDKKKNI-------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCCCHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhhhHHHHHhhhhH-------HHHHHhhHHHH
Confidence 34556667788888888888888888775311000 00000000000000 12467778888
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004006 691 CCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSF 757 (779)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l 757 (779)
|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|+..|++.++. .|+ ..+...+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l 141 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 141 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999999999999988876 678888999999999999999999999998884 555 3344433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=3.5e-05 Score=66.88 Aligned_cols=128 Identities=12% Similarity=0.044 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004006 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (779)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (779)
..+......+...|++++|+..|.++++. +..........+... +. +.+...|..+..+|
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~ 87 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAK----LQ----PVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGG----GH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHH----hC----hhhHHHHHHHHHHH
Confidence 44566677888888888888888887642 000000011111100 00 11345667778888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (779)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (779)
.+.|++++|+..|+++++..+. +..+|..++.+|...|++++|++.|+++.+.. +.+..+...+..+.
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 8888888888888888887654 77788888888888888888888888888764 33444555444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=3.4e-05 Score=66.98 Aligned_cols=81 Identities=12% Similarity=0.040 Sum_probs=66.2
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004006 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (779)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (779)
+...|+.+..+|.+.|++++|+..+++.++... -+...|..++.+|.+.|++++|+..|+++.+..+. +..+...+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 344677788889999999999999999998753 37889999999999999999999999999998654 6666666555
Q ss_pred HHH
Q 004006 410 AQC 412 (779)
Q Consensus 410 ~~~ 412 (779)
++.
T Consensus 154 ~~~ 156 (169)
T d1ihga1 154 VKQ 156 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.99 E-value=4.4e-05 Score=66.09 Aligned_cols=130 Identities=11% Similarity=-0.054 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
.+.-..+.+.+.|++.+|+..|.+.+..- +. ..+...+.....+.+ ...+|+.+..+|.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~~------------~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EM------------EYGLSEKESKASESF-------LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TT------------CCSCCHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH------------hhccchhhhhhcchh-------HHHHHHhHHHHHH
Confidence 34557889999999999999998877530 00 000000001111111 1234556667777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004006 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (779)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (779)
+.|++++|+..++++++.++. +..+|..++.+|...|++++|++.|.++.+.+ +.+..+...+..+....+
T Consensus 76 ~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred Hhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 777777777777777776544 66777777777777777777777777777654 334445555544444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=4.1e-05 Score=62.71 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (779)
+-.+.+.|.+.|++++|+..|++.++.+. .+..++..+..+|.+.|++++|+..++++++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 33445555555555555555555555432 2444555555555555555555555555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=4.9e-05 Score=62.23 Aligned_cols=93 Identities=6% Similarity=0.045 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHHHHHHH
Q 004006 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--IPRN----TFVYNILID 724 (779)
Q Consensus 651 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~~ 724 (779)
.+...|...|++++|+..|.++++.+ +.+...+..+..+|.+.|++++|...++++++.+ .... ..+|..++.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34455555566666666666655554 3355555556666666666666666665554321 0000 124555566
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004006 725 GWARRGDVWEAADLMQQMKQ 744 (779)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~ 744 (779)
.+...+++++|+++|++.+.
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66666666666666666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.95 E-value=8.6e-05 Score=64.19 Aligned_cols=114 Identities=11% Similarity=-0.048 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004006 615 NALILGLVEKRQMEKAIEILDEMTLA---GISP-----------NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD 680 (779)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~---~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 680 (779)
......+.+.|++++|+..|++.+.. .... ....|..+..+|.+.|++++|+..+++++... +.+
T Consensus 19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~ 97 (168)
T d1kt1a1 19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SAN 97 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cch
Confidence 33444555556666665555554321 0000 01234455566666777777777777766664 446
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004006 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (779)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (779)
...|..++.+|...|++++|...|+++...+ +.+......+..+..+.+
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 6666666667777777777777777766654 445555555444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=0.0003 Score=61.00 Aligned_cols=124 Identities=15% Similarity=0.045 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 004006 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (779)
+..........|++++|+..|...+.... .... ........+...-..+... ....+..++..+.+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWR--GPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC--SSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44466778889999999999999887521 1110 0011111111122222221 34556777778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChh
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE-----EGIDAPID 437 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 437 (779)
.|++++|+..++++.+.++. +...|..++.+|...|+..+|++.|+++.+ .|+.|...
T Consensus 80 ~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 88888888888888877554 777888888888888888888888777643 45555433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=4.4e-05 Score=64.00 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHh
Q 004006 263 REWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD----------MHRARQTFENMRARGIEPTLH 332 (779)
Q Consensus 263 ~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~ 332 (779)
++.|+..|.+++..+|. +...+..+..+|...++ +++|+..|+++++.+.. +..
T Consensus 13 fe~A~~~~e~al~~~P~---------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~ 76 (145)
T d1zu2a1 13 FEQIRQDAENTYKSNPL---------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDE 76 (145)
T ss_dssp HHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHHHHhhCCc---------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhH
Confidence 49999999999999998 66667777777765443 45566666666655322 445
Q ss_pred hHHHHHHHHHcc
Q 004006 333 VYTNLIHAYAVG 344 (779)
Q Consensus 333 ~~~~li~~~~~~ 344 (779)
+|+.+..+|...
T Consensus 77 a~~~lG~~y~~~ 88 (145)
T d1zu2a1 77 AVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhhHHHHHHHc
Confidence 555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=4.6e-05 Score=79.28 Aligned_cols=109 Identities=5% Similarity=-0.144 Sum_probs=40.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004006 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (779)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (779)
.+..+...+.+.|+.++|...++..+... ....+..++..+...|++++|+..|+++.+..+. +...|+.|+.+|.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34444444445555555554444433321 1233444455555555555555555555554333 4445555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004006 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (779)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (779)
..|+..+|+..|.+....+ ++...++..|...+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 5555555555555554443 23344444444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.72 E-value=8.3e-05 Score=62.26 Aligned_cols=34 Identities=6% Similarity=-0.156 Sum_probs=17.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004006 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (779)
+.+.+++|++.|+..++... -+..++..+..+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~ 42 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLL 42 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHH
Confidence 34455555555555555432 24555555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.00042 Score=60.04 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=87.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 004006 617 LILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR 696 (779)
Q Consensus 617 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 696 (779)
........|++++|...|.+.+..- +... +......+-+...-..+... ....+..++.++.+.|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3456778899999999999988642 1110 00011111111111112111 23467888999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 004006 697 MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTYT 755 (779)
Q Consensus 697 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~ 755 (779)
+++|...+++++..+ +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-.
T Consensus 83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 999999999999876 77888999999999999999999999999743 59999876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.47 E-value=7.5e-05 Score=69.57 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=25.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 004006 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (779)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (779)
+.|++++|+..+++.++... -|...+..++..|+..|++++|+..|+.+.+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34455555555555544432 24444555555555555555555555555444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.46 E-value=8.3e-05 Score=69.26 Aligned_cols=124 Identities=12% Similarity=-0.012 Sum_probs=84.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH
Q 004006 305 YYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA 384 (779)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 384 (779)
-..+.|++++|+..|++.++.... |...+..+...|+..|++++|...|+...+.... +...+..+...+...+..++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHH
Confidence 345789999999999999998643 7889999999999999999999999999986422 45556556555544444333
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
+...+......+...+...+...+..+...|+.++|.++++++.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3222111111111122334444556677778888888888877765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.30 E-value=0.0016 Score=54.99 Aligned_cols=91 Identities=15% Similarity=0.090 Sum_probs=49.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCC-CC----------HhhHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCC-
Q 004006 303 VNYYARRGDMHRARQTFENMRARGIE-PT----------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG-----IEMS- 365 (779)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~-~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~- 365 (779)
...+.+.|++++|+..|++.++.... ++ ...|+.+..+|.+.|++++|++.+++.++.. ..++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 55666778888888888888763211 11 2345566666666666666666666655310 0001
Q ss_pred ----HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004006 366 ----LVTYSIIVGGFAKMGNAEAADHWFEEAK 393 (779)
Q Consensus 366 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (779)
...++.+..+|.+.|++++|+..|+++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1133444455555555555555555443
|
| >d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Limkain-b1, LKAP species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.001 Score=44.65 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=52.2
Q ss_pred HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecCC
Q 004006 166 HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDG 233 (779)
Q Consensus 166 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~~ 233 (779)
+.|.+.|+++|.|..+.|..- ..| .-.|-|...+..+|.-|+..| +...|++++|.|.++.+
T Consensus 11 q~L~~~f~~h~~V~sv~l~~~--~dg--~~~A~V~v~~~q~A~~~v~~L--hR~KiG~KRI~Vs~~~~ 72 (73)
T d2dgxa1 11 QLLQEAFARHGKVKSVELSPH--TDY--QLKAVVQMENLQDAIGAVNSL--HRYKIGSKKILVSLATG 72 (73)
T ss_dssp HHHHHHHHHHSCEEEEEECSC--CST--TCCEEEEESSHHHHHHHHHHH--TTEEETTEEEEEEECCC
T ss_pred HHHHHHHHhheeEEEEEEEec--cCC--cEEEEEEcCCHHHHHHHHHHH--HHHhcCCeEEEEEEecC
Confidence 355678999999999988653 112 347889999999999999999 99999999999999864
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.24 E-value=0.0021 Score=54.25 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=43.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCC-
Q 004006 373 VGGFAKMGNAEAADHWFEEAKERHATL-----------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEG-----IDAP- 435 (779)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~- 435 (779)
+..+.+.|++++|+..|++.++..... ...+|+.+..+|.+.|++++|++.+++..+.. ..++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 334445556666666666555432110 12345555555666666666655555544320 0000
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 436 ----IDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (779)
Q Consensus 436 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (779)
..+++.+..+|...|++++|+..|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1123444455555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0016 Score=49.29 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-----C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-----L-NAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
...+..++..+.+.|++++|+.+|+++.+.... . ...++..++.+|.+.|++++|++.++++++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 344445555566666666666666655543110 0 1234555555555666666666666555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.08 E-value=0.0063 Score=49.41 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHH
Q 004006 311 DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAAD 386 (779)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~ 386 (779)
++++|+.+|++..+.| +...+..|.. ....+.++|++++++..+.| +...+..|...|.. ..+.++|+
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4677777777777765 3333333332 23356677777777776655 45555556655543 33566666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEG 431 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 431 (779)
++|++..+.+ +......|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666666553 44455555555543 345555555555555544
|
| >d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Synaptojanin 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00062 Score=48.44 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=47.8
Q ss_pred HHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHhhhCCceeeceEEEEEecC
Q 004006 166 HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (779)
Q Consensus 166 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~g~~~~~~~~~v~~~~ 232 (779)
.+|.+.|+.||+|.-||++.| --.|+|.+-.+|.+|+.. +|..+.|+.|+|....
T Consensus 39 ~~Llq~l~~~GeViLvRFv~d---------~mwVTF~dG~SAL~al~l---~g~~v~G~~l~It~~~ 93 (95)
T d1ufwa_ 39 TELMQTLGSYGTIVLVRINQG---------QMLVTFADSHSALSVLDV---DGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETT---------EEEEECSCSHHHHHHHHG---GGSEETTEEEEEECCC
T ss_pred HHHHHHHhhCCeEEEEEEeCC---------eEEEEECCcHHHHHHhcc---CCeEEcceEEEEecCC
Confidence 367889999999999999976 778999999999988864 8999999999998654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.0031 Score=47.63 Aligned_cols=67 Identities=15% Similarity=0.010 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----CCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 004006 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGI-----EPT-LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361 (779)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 361 (779)
+...+..+...+.+.|++++|+..|++.++... .++ ..+++.+..+|.+.|++++|++.++++++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 344455577777788888888887777765311 111 2456666666777777777777777766653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.83 E-value=0.015 Score=47.06 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHH
Q 004006 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAE 421 (779)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 421 (779)
|+++|+++|++..+.| +...+..|.. ....+.++|+.+|++..+.+ +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 5666777777766665 2333333332 22345666666666665553 44445555554443 33455555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004006 422 ALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECG 466 (779)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g 466 (779)
++|++..+.| +......|...|.. ..+.++|+++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555555543 23333334443333 234444555554444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.19 E-value=0.14 Score=38.97 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=97.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004006 586 FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665 (779)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 665 (779)
+.-.|..++..+++.+.... -+..-||.+|.-....-+-+...+.++..-.. -| ...+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 44567788888888777764 25666777776666666666666666554321 11 1234444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004006 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (779)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (779)
...+-.+ + -+...++..++.+...|+-+.-.++.+.+.+.+ .++....-.+..+|.+.|...++.+++.++.++
T Consensus 76 v~C~~~~---n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 4444333 1 133455667788889999999999988877644 789999999999999999999999999999998
Q ss_pred CCC
Q 004006 746 GVQ 748 (779)
Q Consensus 746 g~~ 748 (779)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 874
|
| >d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Smg-4/UPF3 domain: RNA processing protein UPF3x, RRM domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.019 Score=41.70 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=58.8
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCC-cceEEEEeCCHHHHHHHHHHhhhCCceee
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~g~~~~ 222 (779)
.+|.|..||+..|++++.+.++..|.+.....+..+...+.+ -..|+|.|.+.++...-.+.. +|+.+.
T Consensus 2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f--~g~~F~ 71 (91)
T d1uw4a_ 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF--DGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH--TTCEEE
T ss_pred ceEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHc--CCcEEE
Confidence 378999999999999999999999999888888773333434 378999999999999999988 999983
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.45 E-value=0.36 Score=36.71 Aligned_cols=139 Identities=11% Similarity=0.079 Sum_probs=61.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 004006 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (779)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (779)
.-.|..++..++..+..... +..-||++|--....-+-+-..++++.+-.. + |. ..+++.....
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--Dl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh-c--Cc----------hhhhcHHHHH
Confidence 34455666666666655431 4455555554444444444444444443221 1 11 1222333333
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004006 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (779)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 466 (779)
..|-.+-. +...+...+......|+-++-.++++++.+.+ .++......+..+|.+.|...++-+++.+.-+.|
T Consensus 77 ~C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33322211 22223333344445555555555555544422 4444445555555555555555555555555444
Q ss_pred C
Q 004006 467 F 467 (779)
Q Consensus 467 ~ 467 (779)
.
T Consensus 151 ~ 151 (161)
T d1wy6a1 151 E 151 (161)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.22 E-value=0.53 Score=36.23 Aligned_cols=72 Identities=8% Similarity=0.012 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004006 679 LDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNT-FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHT 753 (779)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 753 (779)
+...+--.+..++.++.+ +++++.+++++.+.+ +.+. ..+-.|.-+|.+.|++++|.++++.+++ +.|+..-
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 445555556666665543 556777777776543 2232 4556667777777777777777777776 4565433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.76 E-value=0.68 Score=35.58 Aligned_cols=65 Identities=8% Similarity=-0.018 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004006 366 LVTYSIIVGGFAKMG---NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (779)
Q Consensus 366 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 430 (779)
..|....+.++++.. ++++++.+|+++.+.+.......++.|..+|.+.|++++|.+.++.+.+.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 334444444444332 23345555555444322211234444445555555555555555555443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.32 E-value=5.6 Score=38.86 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=56.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--cCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHc
Q 004006 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV--GRDMEEALSCVRKMKEEG-IEMSLVTYSIIVGGFAK 378 (779)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~ 378 (779)
.+.-..+.|++.++.++...+.. .| ...|-..-..-.+ .....+...+ +.+.. .+.........+..+.+
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~d---yp-L~pYl~~~~l~~~~~~~~~~~i~~F---l~~~p~~P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKD---YP-LYPYLEYRQITDDLMNQPAVTVTNF---VRANPTLPPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTT---ST-THHHHHHHHHHHTGGGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcC---CC-CHHHHHHHHHHhccccCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHHh
Confidence 34455567777777766666531 12 2233222222222 2233333322 22211 01111222333455666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004006 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (779)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 431 (779)
.+++.+.+..|.. ...+...-..++.+....|+.++|.+.+..+-..|
T Consensus 85 ~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred ccCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 7777665543321 22244444556666777777777777776665554
|
| >d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-specific ribonuclease PARN species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=0.38 Score=34.65 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=45.9
Q ss_pred ceEEeccCCCcCChHHHHHHHhccCCeeEEEEecCCCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004006 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (779)
Q Consensus 152 ~~~~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (779)
..+|.-..|......||.++|+.||.|. |..+.| --|||...+.++++.++..+
T Consensus 16 dHVf~~tFP~~Wk~~dI~~lFSpfG~V~-VswIdd--------TSa~V~L~~~e~~~~v~~~~ 69 (100)
T d1whva_ 16 DHVLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDD--------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSCC-CEEEET--------TEEEEECSCHHHHHHHHHHH
T ss_pred ceeEEEeCCcccchhHHHHHhcCCCceE-EEEecC--------ceEEEEecCHHHHHHHHHHh
Confidence 4889999999999999999999999986 444444 37899999999999998776
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.70 E-value=3.2 Score=29.80 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004006 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708 (779)
Q Consensus 662 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (779)
.-++.+-+..+....+.|+..+..+.+++|-+.+++..|.++|+.++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555555555444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.30 E-value=14 Score=35.81 Aligned_cols=206 Identities=9% Similarity=-0.052 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHH----HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004006 450 GNEEKCLIVFERLKECGFSPSIISYGCLIN----LYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANV 525 (779)
Q Consensus 450 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 525 (779)
.+.+.+...+......... +...+..+.. .+...+..+.+...+........ +.....-++......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 4677788888777654221 2222222222 22334666777777777666542 444444445555667889988
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004006 526 FAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (779)
Q Consensus 526 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 605 (779)
...+..|..... -...-.--+..++...|+.+.|..+|..+... . +|-.++.+ .+.|..- .+-......
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~---~~~~~~~~~ 373 (450)
T d1qsaa1 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEY---ELKIDKAPQ 373 (450)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCC---CCCCCCCCS
T ss_pred HHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---C---ChHHHHHH-HHcCCCC---CCCcCCCCc
Confidence 888887753321 13344446778888999999999999887642 1 23333321 2222100 000000000
Q ss_pred CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004006 606 GCIPTVHT---FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR 673 (779)
Q Consensus 606 ~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 673 (779)
.. ..... -..-+..+...|+...|...|..+... .+......+.....+.|.++.|+....+..
T Consensus 374 ~~-~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 374 NV-DSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CC-CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cH-HHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 00 00000 012345677889999999999888753 356667777888889999999997776653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.77 E-value=0.76 Score=33.06 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004006 696 RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINA 760 (779)
Q Consensus 696 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~a 760 (779)
+.-++.+-++.+...++.|+..+..+-+++|.|.+++.-|+.+|+..+.+ ...+..+|..++.-
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 45577788888888889999999999999999999999999999998866 33345577766654
|