Citrus Sinensis ID: 004022
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 779 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZ67 | 1895 | Probable WRKY transcripti | no | no | 0.336 | 0.138 | 0.375 | 5e-43 | |
| Q9FH83 | 1288 | Probable WRKY transcripti | no | no | 0.442 | 0.267 | 0.284 | 3e-30 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.527 | 0.315 | 0.269 | 1e-27 | |
| Q9FL92 | 1372 | Probable WRKY transcripti | no | no | 0.346 | 0.196 | 0.281 | 9e-24 | |
| O82500 | 1095 | Putative disease resistan | no | no | 0.320 | 0.228 | 0.281 | 8e-23 | |
| Q40392 | 1144 | TMV resistance protein N | N/A | no | 0.573 | 0.390 | 0.259 | 6e-21 | |
| Q9FKN7 | 1613 | Protein DA1-related 4 OS= | no | no | 0.367 | 0.177 | 0.256 | 2e-18 | |
| P70587 | 1490 | Leucine-rich repeat-conta | yes | no | 0.387 | 0.202 | 0.279 | 6e-15 | |
| Q80TE7 | 1490 | Leucine-rich repeat-conta | yes | no | 0.387 | 0.202 | 0.279 | 6e-15 | |
| Q96NW7 | 1537 | Leucine-rich repeat-conta | yes | no | 0.378 | 0.191 | 0.289 | 9e-15 |
| >sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 176 bits (447), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 161/325 (49%), Gaps = 63/325 (19%)
Query: 14 LFFFYKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEE 73
+F GT AIEGIFLD+ +K + +P F M NLRL K Y K E
Sbjct: 1143 VFINDTGTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCSKAEEKHG-------- 1193
Query: 74 QLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEK 133
V P GL+YLP KLR LHW+ YPL +LP +F P+NLVELNL S ++ W+G+K
Sbjct: 1194 ------VSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKK 1247
Query: 134 A--CVP------------------------SSIQNFKYLSA------------------- 148
A C SS N +++
Sbjct: 1248 ARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKL 1307
Query: 149 --LSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSS 206
L+ KGC L + PS + +N S C L FP+IS V LY+G + I+E+PSS
Sbjct: 1308 VFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSS 1367
Query: 207 IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYS 266
I+ L LE LDL + LK + TS KL+ L TL L GC++LE FP+ +M+ L+ +
Sbjct: 1368 IKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDL 1427
Query: 267 DRTPITELPSSFENLPGL-EVLFVE 290
RT I ELPSS L L E+LFV+
Sbjct: 1428 SRTDIKELPSSISYLTALDELLFVD 1452
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 135/475 (28%), Positives = 203/475 (42%), Gaps = 130/475 (27%)
Query: 15 FFFYKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYV--PKFYEIEKLPSMSTE 72
F +G++ IEG+FLD S ++ +L P AF NM NLRL K Y P+ + + P+ S
Sbjct: 492 FKRAQGSEEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIYCSNPEVHPVINFPTGS-- 548
Query: 73 EQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGE 132
L LP +LR LHW+ YPL++LP NF P++LVE+N+ S++++ W G
Sbjct: 549 -------------LHSLPNELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGT 595
Query: 133 KA---------CVPSSIQNF------KYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYC 177
K C + + + L + +GC L++FP+ + +N S C
Sbjct: 596 KNLEMLRTIRLCHSHHLVDIDDLLKAENLEVIDLQGCTRLQNFPAAGRLLRLRVVNLSGC 655
Query: 178 VNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSL 237
+ + +I + +L+L + I +P +ST R L
Sbjct: 656 IKIKSVLEIPPNIEKLHLQGTGILALP----------------------VSTVKPNHREL 693
Query: 238 VTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDN 297
V L P + E++E L T + E SS ++L L L ++DCS L +
Sbjct: 694 VNF-------LTEIPGLSEELERL-------TSLLESNSSCQDLGKLICLELKDCSCLQS 739
Query: 298 LPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES---FPRTFLLGLS 354
LP N+ +L+ L LD S C L S FPR
Sbjct: 740 LP-NMANLD------------------------LNVLDLSGCSSLNSIQGFPR------- 767
Query: 355 AMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ 414
+ L++ A+RE+PQ SLEIL G+ SLP M+ L F
Sbjct: 768 FLKQLYLGGTAIREVPQ---LPQSLEILNAHGSCLRSLP----NMANLEF---------- 810
Query: 415 SLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLN 469
LK L L C L+++ P L+ L G LR +P+LPL L+ LN
Sbjct: 811 --------LKVLDLSGCSELETIQGFPRNLKELYFAG-TTLREVPQLPLSLEVLN 856
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum. Arabidopsis thaliana (taxid: 3702) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 145/538 (26%), Positives = 231/538 (42%), Gaps = 127/538 (23%)
Query: 22 DAIEGIFLDLSKIK-------GINLDPRAFTNMS---NLRLFKFYVPKFYEIEKLPSMST 71
+A + I+LD+S K +NL+ + N++ NLR F +++ P
Sbjct: 658 NATKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSDVD-FPEGRN 716
Query: 72 E---EQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQP 128
E E ++K LP GLDYL R +P F+P+ L LN+R K E+
Sbjct: 717 EIVVEDCFWNK-NLPAGLDYLD----------CLTRCMPCEFRPEQLAFLNVRGYKHEKL 765
Query: 129 WEGEKA---------------------------------------CVPSSIQNFKYLSAL 149
WEG ++ +PS+I N L L
Sbjct: 766 WEGIQSLGSLEGMDLSESENLTEIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRL 825
Query: 150 SFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIEC 209
K C L P++++ T++ S C +L FP IS + LYL +AIEE+PS+I
Sbjct: 826 EMKECTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIGN 885
Query: 210 LTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269
L L L+++ C L+ + T L SL TL L GC +L FP I E +K +Y + T
Sbjct: 886 LHRLVRLEMKKCTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLI---SESIKWLYLENT 941
Query: 270 PITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLY-YILAAASAISQLPSSVALS 328
I E+P L+ L + +C L LP IG+L+ L + + + + LP V LS
Sbjct: 942 AIEEIPD-LSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVNLS 1000
Query: 329 NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNN 388
+++ LD S C L +FP I I +L YL
Sbjct: 1001 SLM-ILDLSGCSSLRTFPL---------------------ISTNIVWL------YLENTA 1032
Query: 389 FESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLD 448
E +P+ I + +L + +++ L+ LP D L SL +L D
Sbjct: 1033 IEEIPSTIGNLHRLVKLEMKECTGLEVLP-----------TDVN-LSSLMIL-------D 1073
Query: 449 LTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQ------LLTVRNCNRLQSL 500
L+GC+ LR+ P + ++ L L++ ++ E+P C++ +L + C RL+++
Sbjct: 1074 LSGCSSLRTFPLISTRIECLYLQNT----AIEEVPCCIEDFTRLTVLMMYCCQRLKTI 1127
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Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (281), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 146/341 (42%), Gaps = 71/341 (20%)
Query: 22 DAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQ 81
+ IEG+FLD S + ++ AF NM NLRLFK Y S+ ++ +
Sbjct: 492 EEIEGMFLDTSNL-SFDIKHVAFDNMLNLRLFKIY-------------SSNPEVHHVNNF 537
Query: 82 LPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKA------- 134
L L LP LR LHW+ YPL+ LP NF P +LVE+N+ S++++ W G K
Sbjct: 538 LKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTI 597
Query: 135 --CVPSSIQNF------KYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQI 186
C + + + L + +GC L+SFP+ + +N S C + FP+I
Sbjct: 598 RLCHSQQLVDIDDLLKAQNLEVVDLQGCTRLQSFPATGQLLHLRVVNLSGCTEIKSFPEI 657
Query: 187 SGKVTRLYLGQSAIEEVPSSI------------------ECLTDLEVLDLRGCKRLKRIS 228
+ L L + I E+P SI +++LE DL+ L +IS
Sbjct: 658 PPNIETLNLQGTGIIELPLSIVKPNYRELLNLLAEIPGLSGVSNLEQSDLKPLTSLMKIS 717
Query: 229 TSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLF 288
TS+ L L L C L P ++ NL L+ L
Sbjct: 718 TSYQNPGKLSCLELNDCSRLRSLPNMV------------------------NLELLKALD 753
Query: 289 VEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 329
+ CS+L+ + +L+ LY + A + QLP S+ N
Sbjct: 754 LSGCSELETIQGFPRNLKELYLVGTAVRQVPQLPQSLEFFN 794
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 147/330 (44%), Gaps = 80/330 (24%)
Query: 20 GTDAIEGIFLDLSKIKG-INLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYS 78
GT + GI LD+ +IK + + + F M NL KFY+ S ++++
Sbjct: 525 GTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYM----------SSPIDDKMKV- 573
Query: 79 KVQLPN-GLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKAC-- 135
K+QLP GL YLP+ LR LHWD YPL PS+F+P+ LVELN+ SK+++ W G +
Sbjct: 574 KLQLPEEGLSYLPQ-LRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRN 632
Query: 136 -------------------------------------VPSSIQNFKYLSALSFKGCQSLR 158
+PSSI+N ++L L C+ L
Sbjct: 633 LRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLE 692
Query: 159 SFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDL 218
P+N++ ++F YC L FP+IS + L L +AI EVP S++ +
Sbjct: 693 IIPTNINLPSLEVLHFRYCTRLQTFPEISTNIRLLNLIGTAITEVPPSVKYWS------- 745
Query: 219 RGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSF 278
++ I K++ LV H P +LEK+ + + +P
Sbjct: 746 ----KIDEICMERAKVKRLV-----------HVPYVLEKL-----CLRENKELETIPRYL 785
Query: 279 ENLPGLEVLFVEDCSKLDNLPDNIGSLEYL 308
+ LP L+++ + C + +LP GS+ L
Sbjct: 786 KYLPRLQMIDISYCINIISLPKLPGSVSAL 815
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 169/652 (25%), Positives = 245/652 (37%), Gaps = 205/652 (31%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK 79
GT A+E I++ S + +A NM LR+F +
Sbjct: 526 GTMAMEAIWVS-SYSSTLRFSNQAVKNMKRLRVFNM----------------------GR 562
Query: 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSS 139
+DYLP LR YP + PS F+ K LV L LR + + W E +PS
Sbjct: 563 SSTHYAIDYLPNNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWT-ETKHLPS- 620
Query: 140 IQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQ-- 197
LR I+ S+ L P +G Y+
Sbjct: 621 -----------------LRR------------IDLSWSKRLTRTPDFTGMPNLEYVNLYQ 651
Query: 198 -SAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILE 256
S +EEV S+ C + + L L CK LKR + SL L L C +LE PEI
Sbjct: 652 CSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPC--VNVESLEYLGLRSCDSLEKLPEIYG 709
Query: 257 KME-----HLK---------RIYSDRTPITEL-----------PSSFENLPGLEVLFVED 291
+M+ H++ I+ +T +T+L PSS L L L V
Sbjct: 710 RMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSG 769
Query: 292 CSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN-----MLRSL-DSSHCKGLESF 345
CSKL++LP+ IG L+ L A+ + I + PSS+ N M R D H + F
Sbjct: 770 CSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFE----F 825
Query: 346 PRTFLLGLSAMGLLHIS--DYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLR 403
P GL ++ L++S + +P+EI LSSL+ L LS NNFE LP+ I Q+
Sbjct: 826 P-PVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLG--- 881
Query: 404 FIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPL 463
L+SLDL C L LPELP
Sbjct: 882 ---------------------------------------ALQSLDLKDCQRLTQLPELPP 902
Query: 464 CLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSP 523
L L++ DC+M L L+T R +KL +
Sbjct: 903 ELNELHV-DCHM-----ALKFIHYLVTKR-----------------------KKLHR--- 930
Query: 524 DLQWAPESLKSAAICFEFTNCLKLNGKANNKILADSLLRIRHMAIASLRLGYEMAINEKL 583
+KL+ A+N + + I+S+R ++++ ++ L
Sbjct: 931 ---------------------VKLD-DAHNDTMYNLFAYTMFQNISSMR--HDISASDSL 966
Query: 584 SELRGSLIVLPGS----EIPDWFSNQSSGSSICIQLPPHSSC-RNLIGFAFC 630
S L V G +IP WF +Q SS+ + LP + +GFA C
Sbjct: 967 S-----LTVFTGQPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAVC 1013
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Nicotiana glutinosa (taxid: 35889) |
| >sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 154/371 (41%), Gaps = 85/371 (22%)
Query: 21 TDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKV 80
+ IE IFLD S +K ++ AF NM NL+ K Y I S +
Sbjct: 516 AEHIESIFLDTSNVK-FDVKHDAFKNMFNLKFLKIYNSCSKYI--------------SGL 560
Query: 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACV---- 136
P GLD LP +LR LHW+ YPL++LP +F +LV+L++ S++ + K V
Sbjct: 561 NFPKGLDSLPYELRLLHWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKR 620
Query: 137 ---PSSIQ--------NFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQ 185
S+Q + + + +GC L+ FP +N S C + F
Sbjct: 621 LILSHSLQLVECDILIYAQNIELIDLQGCTGLQRFPDTSQLQNLRVVNLSGCTEIKCFSG 680
Query: 186 ISGKVTRLYLGQSAIEEVP------------------SSIECLTDLEVLDLRGCKRLKRI 227
+ + L+L + I E+P + +E +D+E +DL L +
Sbjct: 681 VPPNIEELHLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATV 740
Query: 228 STSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVL 287
+++ + LV L + C NL P+++ +L L+VL
Sbjct: 741 TSNNHVMGKLVCLNMKYCSNLRGLPDMV------------------------SLESLKVL 776
Query: 288 FVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGL----- 342
++ CS+L+ + +L+ LY +AI +LP L N L L++ CK L
Sbjct: 777 YLSGCSELEKIMGFPRNLKKLY---VGGTAIRELPQ---LPNSLEFLNAHGCKHLKSINL 830
Query: 343 --ESFPRTFLL 351
E PR F+
Sbjct: 831 DFEQLPRHFIF 841
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 158/343 (46%), Gaps = 41/343 (11%)
Query: 134 ACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIE-----FPQISG 188
+ +P+SI + L L ++ FP N+ +TI VN I F Q+
Sbjct: 82 SSLPTSIASLVNLKELDISK-NGVQEFPENIKCCKCLTI-IEASVNPISKLPDGFTQLLN 139
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
+T+LYL + +E +P++ L L +L+LR LK + S KL L L LG
Sbjct: 140 -LTQLYLNDAFLEFLPANFGRLVKLRILELRE-NHLKTLPKSMHKLAQLERLD-LGNNEF 196
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSK-------------- 294
PE+L+++++L+ ++ D + LP S L++L D SK
Sbjct: 197 SELPEVLDQIQNLRELWMDNNALQVLPGSIGK---LKMLVYLDMSKNRIETVDMDISGCE 253
Query: 295 -----------LDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLE 343
L LPD+IG L+ L + + ++ LP+++ ++L D S C LE
Sbjct: 254 ALEDLLLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCS-CNELE 312
Query: 344 SFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLR 403
S P T L ++ L + + + E+P+EI ++ ++ L N E LP I QM +LR
Sbjct: 313 SLPPTIGY-LHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLR 371
Query: 404 FIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLES 446
++L D N L++LP LK L + QS ++P E+
Sbjct: 372 VLNLSD-NRLKNLPFSFTKLKELAALWLSDNQSKALIPLQTEA 413
|
Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression. Rattus norvegicus (taxid: 10116) |
| >sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 158/343 (46%), Gaps = 41/343 (11%)
Query: 134 ACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIE-----FPQISG 188
+ +P+SI + L L ++ FP N+ +TI VN I F Q+
Sbjct: 82 SSLPTSIASLVNLKELDISK-NGVQEFPENIKCCKCLTI-IEASVNPISKLPDGFTQLLN 139
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
+T+LYL + +E +P++ L L +L+LR LK + S KL L L LG
Sbjct: 140 -LTQLYLNDAFLEFLPANFGRLVKLRILELRE-NHLKTLPKSMHKLAQLERLD-LGNNEF 196
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSK-------------- 294
PE+L+++++L+ ++ D + LP S L++L D SK
Sbjct: 197 SELPEVLDQIQNLRELWMDNNALQVLPGSIGK---LKMLVYLDMSKNRIETVDMDISGCE 253
Query: 295 -----------LDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLE 343
L LPD+IG L+ L + + ++ LP+++ ++L D S C LE
Sbjct: 254 ALEDLLLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCS-CNELE 312
Query: 344 SFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLR 403
S P T L ++ L + + + E+P+EI ++ ++ L N E LP I QM +LR
Sbjct: 313 SLPPTIGY-LHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLR 371
Query: 404 FIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLES 446
++L D N L++LP LK L + QS ++P E+
Sbjct: 372 VLNLSD-NRLKNLPFSFTKLKELAALWLSDNQSKALIPLQTEA 413
|
Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression. Mus musculus (taxid: 10090) |
| >sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 157/339 (46%), Gaps = 44/339 (12%)
Query: 138 SSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIE-----FPQISGKVTR 192
+S+ N K L +S G Q FP N+ +TI VN I F Q+ +T+
Sbjct: 89 ASLVNLKELD-ISKNGVQE---FPENIKCCKCLTI-IEASVNPISKLPDGFTQLLN-LTQ 142
Query: 193 LYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFP 252
LYL + +E +P++ L L +L+LR LK + S KL L L LG P
Sbjct: 143 LYLNDAFLEFLPANFGRLVKLRILELRE-NHLKTLPKSMHKLAQLERLD-LGNNEFGELP 200
Query: 253 EILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSK------------------ 294
E+L+++++L+ ++ D + LP S L++L D SK
Sbjct: 201 EVLDQIQNLRELWMDNNALQVLPGSIGK---LKMLVYLDMSKNRIETVDMDISGCEALED 257
Query: 295 -------LDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPR 347
L LPD+IG L+ L + + ++ LP+++ ++L D S C LES P
Sbjct: 258 LLLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCS-CNELESLPS 316
Query: 348 TFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHL 407
T L ++ L + + + E+P+EI ++ ++ L N E LP I QM +LR ++L
Sbjct: 317 TIGY-LHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNL 375
Query: 408 EDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLES 446
D N L++LP LK L + QS ++P E+
Sbjct: 376 SD-NRLKNLPFSFTKLKELAALWLSDNQSKALIPLQTEA 413
|
Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 779 | ||||||
| 255544956 | 1403 | leucine-rich repeat containing protein, | 0.860 | 0.477 | 0.297 | 4e-71 | |
| 224145030 | 1435 | tir-nbs-lrr resistance protein [Populus | 0.768 | 0.417 | 0.316 | 5e-69 | |
| 224127917 | 1470 | tir-nbs-lrr resistance protein [Populus | 0.767 | 0.406 | 0.314 | 1e-68 | |
| 224145021 | 1561 | tir-nbs-lrr resistance protein [Populus | 0.783 | 0.390 | 0.308 | 5e-68 | |
| 359486075 | 1291 | PREDICTED: TMV resistance protein N-like | 0.780 | 0.470 | 0.305 | 4e-67 | |
| 255563202 | 1158 | leucine-rich repeat containing protein, | 0.473 | 0.318 | 0.384 | 9e-67 | |
| 147770134 | 1414 | hypothetical protein VITISV_040107 [Viti | 0.780 | 0.429 | 0.305 | 1e-66 | |
| 359486073 | 1296 | PREDICTED: TMV resistance protein N-like | 0.789 | 0.474 | 0.290 | 1e-65 | |
| 224089412 | 679 | predicted protein [Populus trichocarpa] | 0.799 | 0.917 | 0.299 | 1e-63 | |
| 451798990 | 1335 | TMV resistance protein N-like protein 7 | 0.827 | 0.483 | 0.297 | 2e-63 |
| >gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 248/834 (29%), Positives = 380/834 (45%), Gaps = 164/834 (19%)
Query: 19 KGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYS 78
+GT A EGIFLD+SKI+ ++L AF+ M NLRL KFY F + +E L
Sbjct: 532 RGTFATEGIFLDISKIEKVDLSSVAFSKMWNLRLLKFYHNSFLSWKNPTGFVSESTLDSR 591
Query: 79 KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKAC--- 135
+GL LP KL +LHW YP +LPSNF +NLVELN+ S+V++ W G K
Sbjct: 592 -----DGLQSLPNKLCFLHWHGYPWESLPSNFSMENLVELNMPFSQVKELWTGVKHLQKL 646
Query: 136 ------------------------------------VPSSIQNFKYLSALSFKGCQSLRS 159
+PSSIQ + L LS C+ L+S
Sbjct: 647 KLLDLHDSELLVTLPDLSSASNLEKIILNNCTSLLEIPSSIQCLRKLVCLSLSNCKELQS 706
Query: 160 FPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLR 219
PS + T+N S C NL +FP+ISG++ L+L + +EE PSS++ L L +L L
Sbjct: 707 LPSLIPLKYLKTLNLSSCSNLKKFPEISGEIEELHLDGTGLEEWPSSVQYLDKLRLLSLD 766
Query: 220 GCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFE 279
C+ LK + S L SL L L C +L++FP+++ +++L T I ELPSS
Sbjct: 767 HCEDLKSLPGSI-HLNSLDNLDLSWCSSLKNFPDVVGNIKYLN---VGHTAIEELPSSIG 822
Query: 280 NLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHC 339
+L L L ++D +++ LP +IG+L L + S+I +LPSS+ + L L+ +
Sbjct: 823 SLVSLTKLNLKD-TEIKELPSSIGNLSSLVELNLKESSIKELPSSIGCLSSLVKLNIA-V 880
Query: 340 KGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQM 399
+E P + L LS++ ++ + +P I L+SL L L+ + LP I +
Sbjct: 881 VDIEELPSS-LGQLSSLVEFNLEKSTLTALPSSIGCLTSLVKLNLAVTEIKELPPSIGCL 939
Query: 400 SQLRFIHLEDFNMLQSLP----ELPLCLKYLHLIDCKMLQSLPVLPFCLESLD---LTGC 452
S L ++L ML SLP EL CL+ L+L + L+S+P L+ L L C
Sbjct: 940 SSLVELNLSQCPMLGSLPFSIGELK-CLEKLYLCGLRRLRSIPSSIRELKRLQDVYLNHC 998
Query: 453 NMLRSLPELPLC------------------------------------------------ 464
L LP L C
Sbjct: 999 TKLSKLPSLSGCSSLRDLVLSYSGIVKVPGSLGYLSSLQVLLLKGNNFMRIPATIRQLSW 1058
Query: 465 LQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPD 524
L+ L++ C L++LPELP +++L NC L+++ L+ QE + SPD
Sbjct: 1059 LEVLDISYCKRLKALPELPQRIRVLVAHNCTSLKTVSSPLIQFQESQ--------EQSPD 1110
Query: 525 LQWAPESLKSAAICFEFTNCLKLNGKANNKILADSLLRIRHMAIASLRL--GYEMAINEK 582
++ F F NC+ L A + I+ +LL+ +H+A A L L YE
Sbjct: 1111 DKYG----------FTFANCVSLEKNARSNIVESALLKTQHLATAVLELLTSYEEI---- 1156
Query: 583 LSELRGSLIVLPGSEIPDWFSNQSSGSSICIQLPPHSSCRNLIGFAFCAVLDSKKVDSDC 642
L ++ PGSEIP+ F Q++G+S+ LP L+GF FCAV++ +
Sbjct: 1157 ---LVSPVVCFPGSEIPECFRYQNTGASVTTLLPSKWHNNKLVGFTFCAVIELEN----- 1208
Query: 643 FRYFYVSFQFDLEIKTLSETKHVD-LGYNSRYIEDL-----IDSDRVILGFKPCLNVGFP 696
R++ F F + + E ++ D L + S+ I + ++D V L C+ +
Sbjct: 1209 -RHYQDGFTFQCDCRI--ENEYGDSLEFTSKEIGEWGNQFEFETDHVFLWNTSCIYILTE 1265
Query: 697 DGYHH-----TIATFKF--FAERKF---------YKIKRCGLCPVYANPSETKD 734
+ Y A F+F + E ++ +K+K G PVYA + D
Sbjct: 1266 ERYEQLRKNSCTAIFEFACYTEDEYKVMLPGANSFKVKNSGFNPVYAKDEKEWD 1319
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 242/764 (31%), Positives = 353/764 (46%), Gaps = 165/764 (21%)
Query: 21 TDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKV 80
T+ +EG+FLD+S+I+ I L AF M NLRL K Y S + ++ V
Sbjct: 539 TEKVEGMFLDVSEIREIELSSTAFARMYNLRLLKIY----------NSAAGDK----CTV 584
Query: 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEK------- 133
LP+GL+ L +LRYLHWD YPL +LP NF+P+NLVELNL SKV+Q W G++
Sbjct: 585 HLPSGLESLSHELRYLHWDGYPLTSLPCNFRPQNLVELNLSSSKVKQLWRGDQNLGNLKD 644
Query: 134 --------------------------------ACVPSSIQNFKYLSALSFKGCQSLRSFP 161
PSSIQ+ L L +GC+ L + P
Sbjct: 645 VNLSNCEHITFLPDLSKARNLERLNLQFCKSLVKFPSSIQHLDKLVDLDLRGCKRLINLP 704
Query: 162 SNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGC 221
S ++ C T+N S C NL + P+ +GK+T L L ++A+EE+P SI L+ L L+L+ C
Sbjct: 705 SRINSSCLETLNLSGCANLKKCPETAGKLTYLNLNETAVEELPQSIGELSGLVTLNLKNC 764
Query: 222 KRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENL 281
K + + + L+SL+ + + GC ++ FP+ + +L Y + T I ELPSS L
Sbjct: 765 KLVLNLPENIYLLKSLLIVDISGCSSISRFPDFSWNIRYL---YLNGTAIEELPSSIGGL 821
Query: 282 PGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKG 341
L L + C++L NLP SA+S+L L LD S C
Sbjct: 822 RELIYLDLVGCNRLKNLP----------------SAVSKL-------GCLEKLDLSGCSS 858
Query: 342 LESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSG-NNFESLPAIIKQMS 400
+ FP+ + L++ A+REIP I L L L+L FE LP+ I ++
Sbjct: 859 ITEFPKVS----RNIRELYLDGTAIREIPSSIECLCELNELHLRNCKQFEILPSSICKLK 914
Query: 401 QLRFIHLEDFNMLQSLPEL---PLCLKYLHL-----------------------IDCKML 434
+LR ++L + PE+ +CL+YL+L +CK L
Sbjct: 915 KLRRLNLSGCLQFRDFPEVLEPMVCLRYLYLEQTRITKLPSPIGNLKGLACLEVGNCKYL 974
Query: 435 QSLPVLPF------------CLESLDLTGCNMLRSLPELPLCLQYL-NLE----DCNMLR 477
+ + CL L+L GC SL E+P L L +LE N LR
Sbjct: 975 EDIHCFVGLQLSKRHRVDLDCLRKLNLDGC----SLSEVPDSLGLLSSLEVLDLSGNNLR 1030
Query: 478 SLP---ELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKS 534
++P LQ L +RNC RLQSLPE+ L +LD + L+ + + ++
Sbjct: 1031 TIPISINKLFELQYLGLRNCKRLQSLPELPPRLSKLDVDNCQSLNYL---VSRSSTVVEG 1087
Query: 535 AAICFEFTNCLKLNGKANNKILADSLLRIRHMAIASLRLGYEMAINEKLSELRGSLIVLP 594
F FTNCL+L N+IL SLL+ + + + RL +++ + E S LP
Sbjct: 1088 NIFEFIFTNCLRL--PVVNQILEYSLLKFQ---LYTKRLYHQLP---DVPEGACSF-CLP 1138
Query: 595 GSEIPDWFSNQSSGSSICIQLPPHSSCRNLIGFAFCAVLDSKKVDSDCFRYFYVSFQFDL 654
G P+WFS+QS GS QL H +GF+ CAV+ FR S L
Sbjct: 1139 GDVTPEWFSHQSWGSIATFQLSSHWVNSEFLGFSLCAVI--------AFR----SISHSL 1186
Query: 655 EIKTLSETKHVDLGYNSRYI-------EDLIDSDRVILGFKPCL 691
++K ++ + RY E IDS + +GF PCL
Sbjct: 1187 QVKCTYHFRNEHGDSHDRYCYLYGWYDEKRIDSAHIFVGFDPCL 1230
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 233/741 (31%), Positives = 339/741 (45%), Gaps = 143/741 (19%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK 79
GT +EGIFLD+SKI+ I L A M LRL K Y E +
Sbjct: 524 GTGKVEGIFLDVSKIREIELSSTALGRMYKLRLLKIY--------------NSEAGVKCR 569
Query: 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEK------ 133
V LP+GL+ L ++LRYLHWD YPL +LPSNF+P+NLVE+NL CSKV + W G++
Sbjct: 570 VHLPHGLESLSEELRYLHWDGYPLTSLPSNFRPQNLVEINLSCSKVNRLWRGDQNLVNLK 629
Query: 134 ---------------------------------ACVPSSIQNFKYLSALSFKGCQSLRSF 160
VPSSIQ+ L L +GC+ L +
Sbjct: 630 DVNLSNCEHITFLPDLSKARNLERLNLQFCTSLVKVPSSIQHLDRLVDLDLRGCERLVNL 689
Query: 161 PSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRG 220
PS ++ C T+N S C NL + P+ + K+T L L ++A+EE+P SI L+ L L+L+
Sbjct: 690 PSRINSSCLETLNLSGCANLKKCPETARKLTYLNLNETAVEELPQSIGELSGLVALNLKN 749
Query: 221 CKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFEN 280
CK L + + L SL+ + + GC ++ P+ + +L Y + T I ELPSS +
Sbjct: 750 CKLLVNLPENMYLLTSLLLVDISGCSSISRLPDFSRNIRYL---YLNGTAIEELPSSIGD 806
Query: 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCK 340
L L L + CS + P +++ LY +AI ++PSS+ L L +CK
Sbjct: 807 LRKLIYLNLSGCSSITEFPKVSNNIKELYL---DGTAIREIPSSIDCLFELVELHLRNCK 863
Query: 341 GLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGN-NFESLPAIIKQM 399
E P + I L LE L LSG F P +++ M
Sbjct: 864 QFEILPSS------------------------ICTLRKLERLNLSGCLQFRDFPEVLEPM 899
Query: 400 SQLRFIHLEDFNMLQSLP------------ELPLCLKYLHLIDC----KMLQSLPVLPFC 443
LR+++LE+ + LP E+ C KYL+ I+C ++ + L +
Sbjct: 900 VCLRYLYLEE-TRITKLPSPIGNLKGLACLEVGNC-KYLNDIECFVDLQLSERWVDLDY- 956
Query: 444 LESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLC------LQLLTVRNCNRL 497
L L+L GC+ + +P+ CL L + D + + +PL LQ L +RNC RL
Sbjct: 957 LRKLNLDGCH-ISVVPDSLGCLSSLEVLDLSG-NNFSTIPLSINKLSELQYLGLRNCKRL 1014
Query: 498 QSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGKANNKILA 557
+SLPE+ L +LDA E L+ + +K F FTNCL
Sbjct: 1015 ESLPELPPRLSKLDADNCESLNYLGSS---SSTVVKGNIFEFIFTNCL------------ 1059
Query: 558 DSLLRIRHM---AIASLRLGYEMAINEKLSELRGSL-IVLPGSEIPDWFSNQSSGSSICI 613
SL RI + A+ RL Y +++ L G+ LPG P W S+QS GS++
Sbjct: 1060 -SLCRINQILPYALKKFRL-YTKRLHQLTDVLEGACSFFLPGGVSPQWLSHQSWGSTVTC 1117
Query: 614 QLPPHSSCRNLIGFAFCAVLDSKKVDSDCFRYFYVSFQFDLEIKTLSETKHVDLGY---N 670
QL H + +GF+ CAV+ F F S Q +E Y +
Sbjct: 1118 QLSSHWANSKFLGFSLCAVI--------AFHSFGHSLQVKCTYHFSNEHGDSHDLYCYLH 1169
Query: 671 SRYIEDLIDSDRVILGFKPCL 691
Y E IDS+ +++GF PCL
Sbjct: 1170 GWYDEKRIDSEHILVGFDPCL 1190
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 236/766 (30%), Positives = 353/766 (46%), Gaps = 156/766 (20%)
Query: 19 KGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYS 78
+GT +EGIFLD+SKI+ I L A M LRL K Y E
Sbjct: 523 QGTGKVEGIFLDVSKIREIELSSTALERMYKLRLLKIY--------------NSEAGVKC 568
Query: 79 KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACV-- 136
+V LP+GL+ L ++LRYLHWD YPL +LPSNF+P+NLVE+NL CSKV + W G + V
Sbjct: 569 RVHLPHGLESLSEELRYLHWDGYPLTSLPSNFRPQNLVEINLSCSKVNRLWRGHQNLVNL 628
Query: 137 -------------------------------------PSSIQNFKYLSALSFKGCQSLRS 159
PSS+Q+ L L +GC+ L +
Sbjct: 629 KDVNLSNCEHITFMPDLSKARNLERLNLQFCTSLVKFPSSVQHLDKLVDLDLRGCKRLIN 688
Query: 160 FPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLR 219
PS ++ C T+N S C NL + P+ + K+T L L ++A+EE+P SI L L L+L+
Sbjct: 689 LPSRINSSCLETLNVSGCANLKKCPETARKLTYLNLNETAVEELPQSIGELNGLVALNLK 748
Query: 220 GCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFE 279
CK L + + L+SL+ + GC ++ P+ + +L Y + T I ELPSS
Sbjct: 749 NCKLLVNLPENMYLLKSLLIADISGCSSISRLPDFSRNIRYL---YLNGTAIEELPSSIG 805
Query: 280 NLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHC 339
+L L L + C++L NLP SA+S+L L LD S C
Sbjct: 806 DLRELIYLDLGGCNRLKNLP----------------SAVSKLVC-------LEKLDLSGC 842
Query: 340 KGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSG-NNFESLPAIIKQ 398
+ FP+ + + L+++ A+REIP I L L L+L FE LP+ I +
Sbjct: 843 SNITEFPKVS----NTIKELYLNGTAIREIPSSIECLFELAELHLRNCKQFEILPSSICK 898
Query: 399 MSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPVLPF----CLESLDLTG 451
+ +L+ ++L + PE+ +CL+YL+L ++ + LP P L L++
Sbjct: 899 LRKLQRLNLSGCVQFRDFPEVLEPMVCLRYLYLEQTRITK-LPS-PIGNLKGLACLEVGN 956
Query: 452 CNMLRSLP-----ELPL-----CLQYLNLEDC----------------------NMLRSL 479
C LR + +LP CL+ LNL+ C N RS+
Sbjct: 957 CQHLRDIECIVDLQLPERCKLDCLRKLNLDGCQIWEVPDSLGLVSSLEVLDLSGNNFRSI 1016
Query: 480 P---ELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAA 536
P LQ L +RNC L+SLPE+ L +LDA L + + +++
Sbjct: 1017 PISINKLFELQYLGLRNCRNLESLPELPPRLSKLDADNCWSLRT----VSCSSTAVEGNI 1072
Query: 537 ICFEFTNCLKLNGKANNKILADSLLRIRHMAIASLRLGYEM-AINEKLSELRGSLIVLPG 595
F FTNC +L + N+IL SLL+ + + + RL +++ + E+ LPG
Sbjct: 1073 FEFIFTNCKRL--RRINQILEYSLLKFQ---LYTKRLYHQLPDVPEEACSF-----CLPG 1122
Query: 596 SEIPDWFSNQSSGSSICIQLPPHSSCRNLIGFAFCAVLD----SKKVDSDCFRYFYVSFQ 651
P+WFS+QS GS + QL H + +GF+ CAV+ S + C +F+
Sbjct: 1123 DMTPEWFSHQSWGSIVTFQLSSHWAHTKFLGFSLCAVIAFHSFSHSLQVKCTYHFHNEHG 1182
Query: 652 FDLEIKTLSETKHVDLGYN------SRYIEDLIDSDRVILGFKPCL 691
+ L HV G + Y E I+S + +G PCL
Sbjct: 1183 ---DSHDLYCYLHVCYGNDLYCYLHDWYGEKRINSKHIFVGLDPCL 1225
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 241/790 (30%), Positives = 348/790 (44%), Gaps = 182/790 (23%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYS- 78
GT+A+EG+ L+LS +K ++ FT M+ LR+ +FY + + + + + Y+
Sbjct: 530 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTE 589
Query: 79 -KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEK---- 133
K L +L LR L+WD YPL++LPSNF P+ L+EL + S++EQ WEG K
Sbjct: 590 CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 649
Query: 134 ------------------------------AC-----VPSSIQNFKYLSALSFKGCQSLR 158
C V SI K L L+ +GC++L+
Sbjct: 650 LKFIELSHSQHLIKAPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLK 709
Query: 159 SFPSNLHFVCPVTINFSYCVNLIEFPQISG---KVTRLYLGQSAIEEVPSSIECLTDLEV 215
SF S++H + S C L + P++ G ++ L L +AI+ +P SIE L L +
Sbjct: 710 SFLSSIHLESLQILTLSGCSKLKKLPEVQGAMDNLSELSLKGTAIKGLPLSIEYLNGLAL 769
Query: 216 LDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELP 275
+L CK L+ + KL+SL TLIL CL L+ PEI E ME LK ++ D T + ELP
Sbjct: 770 FNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLRELP 829
Query: 276 SSFENLPGL------------------------EVLFVEDCSKLDNLPDNIGSLEYLYYI 311
SS E+L GL + L + CS+L LPD++GSL+ L +
Sbjct: 830 SSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLLKL 889
Query: 312 LAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ 371
A S I ++PSS+ L L+ L + CKG S R L L R P
Sbjct: 890 KANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSL-------------RASPT 936
Query: 372 EIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDC 431
+ LSSL +L+ L+ ++L D N+L+ LP L L ++C
Sbjct: 937 DGLRLSSLTVLH-----------------SLKKLNLSDRNLLEG--ALPSDLSSLSWLEC 977
Query: 432 KMLQSLPVLPFCLESLDLTGCNMLR---SLPELPLCLQYLNLEDCNMLRSLPELPLCLQL 488
LDL+ N + SL LP L+ L +E C L+SLPELP ++
Sbjct: 978 ---------------LDLSRNNFITVPTSLSRLP-HLRRLIVEHCKNLQSLPELPSSIKE 1021
Query: 489 LTVRNCNRLQ--SLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLK 546
L +C L+ S P L+ K FEF+NC +
Sbjct: 1022 LLANDCTSLETFSYPSSAYPLR------------------------KFGDFNFEFSNCFR 1057
Query: 547 LNGKANNKILADSLLRIRHMAIASLRLGYEMAINE---KLSELRGSLIVLPGSEIPDWFS 603
L G + + L IR +AS++ MA +E + E R +V PGS IP+WF+
Sbjct: 1058 LVGNEQSDTVEAILQEIR--LVASIQ--KSMAPSEHSARYGESRYDAVV-PGSRIPEWFT 1112
Query: 604 NQSSGSSICIQLPPHSSCRNLIGFAFCAVLDSK----KVDSDCFRYFYVSFQFDLEIKT- 658
+QS G SI ++LPP N IG A CAV K K+ + S F L+ T
Sbjct: 1113 HQSEGDSITVELPPGCYNTNSIGLAACAVFHPKFSMGKIGRSAYFSVNESGGFSLDNTTS 1172
Query: 659 --LSETKHVDLGYNSRYIEDLIDSDRVILGFKPCLNVGFPDGYHHTIATFKFFAERKFYK 716
S+ H+ GY R+I G V D AT K E
Sbjct: 1173 MHFSKADHIWFGY------------RLISG------VDLRDHLKVAFATSKVPGE----V 1210
Query: 717 IKRCGLCPVY 726
+K+CG+ VY
Sbjct: 1211 VKKCGVRLVY 1220
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 261 bits (667), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 239/434 (55%), Gaps = 65/434 (14%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK 79
GT+AI GI L +S+ + + L+ AFT +SNL KF + + EE+ K
Sbjct: 565 GTEAIVGILLGMSEARKLELNRNAFTRISNL---KFLILRMSN----NCGGFEEE---CK 614
Query: 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSS 139
VQ P GL+ LP++LRYL+W YPL+ LP+NF P NL+ELN S++E WEG+K VPSS
Sbjct: 615 VQFPEGLESLPQQLRYLYWHGYPLKFLPANFHPTNLIELNFPYSRLEGLWEGDK--VPSS 672
Query: 140 IQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSA 199
I L+ +S + +++RSFP+ + T++ S C NL FP++S + LYL ++A
Sbjct: 673 IGQLTKLTFMSLRCSKNIRSFPTTIDLQSLETLDLSGCSNLKIFPEVSRNIRYLYLNETA 732
Query: 200 IEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKME 259
I+EVP SIE L+ L VL+++ C L+ I ++ KL+SL LIL GC LE FPEILE
Sbjct: 733 IQEVPLSIEHLSKLVVLNMKNCNELECIPSTIFKLKSLGVLILSGCKKLESFPEILETTN 792
Query: 260 HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS 319
HL+ + D T + LP +F NL L +L DCSKL LP N+ +L+ L + A +S
Sbjct: 793 HLQHLSLDETAMVNLPDTFCNLKALNMLNFSDCSKLGKLPKNMKNLKSLAELRAGGCNLS 852
Query: 320 QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSL 379
LP+ ++ YLSS+
Sbjct: 853 TLPA------------------------------------------------DLKYLSSI 864
Query: 380 EILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPV 439
L LSG+NF+++PA I Q+S+LR+I++ LQSLPELP ++YL+ DC+ L S+
Sbjct: 865 VELNLSGSNFDTMPAGINQLSKLRWINVTGCKRLQSLPELPPRIRYLNARDCRSLVSISG 924
Query: 440 LP-----FCLESLD 448
L C SLD
Sbjct: 925 LKQLFELGCSNSLD 938
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 241/790 (30%), Positives = 348/790 (44%), Gaps = 182/790 (23%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYS- 78
GT+A+EG+ L+LS +K ++ FT M+ LR+ +FY + + + + + Y+
Sbjct: 503 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVXRFYDAQIWGSSWIWRRNDRYKSPYTE 562
Query: 79 -KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEK---- 133
K L +L LR L+WD YPL++LPSNF P+ L+EL + S++EQ WEG K
Sbjct: 563 CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 622
Query: 134 ------------------------------AC-----VPSSIQNFKYLSALSFKGCQSLR 158
C V SI K L L+ +GC++L+
Sbjct: 623 LKFIELSHSQHLIKXPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLK 682
Query: 159 SFPSNLHFVCPVTINFSYCVNLIEFPQISGKV---TRLYLGQSAIEEVPSSIECLTDLEV 215
SF S++H + S C L + P++ G + + L L +AI+ +P SIE L L +
Sbjct: 683 SFLSSIHLESLQILTLSGCSKLKKXPEVQGAMDNLSELSLKGTAIKGLPLSIEYLNGLAL 742
Query: 216 LDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELP 275
+L CK L+ + KL+SL TLIL CL L+ PEI E ME LK ++ D T + ELP
Sbjct: 743 FNLEECKSLESLPGCXFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLRELP 802
Query: 276 SSFENLPGL------------------------EVLFVEDCSKLDNLPDNIGSLEYLYYI 311
SS E+L GL + L + CS+L LPD++GSL+ L +
Sbjct: 803 SSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLLKL 862
Query: 312 LAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ 371
A S I ++PSS+ L L+ L + CKG S R L L R P
Sbjct: 863 KANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSL-------------RASPT 909
Query: 372 EIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDC 431
+ LSSL +L+ L+ ++L D N+L+ LP L L ++C
Sbjct: 910 DGLRLSSLTVLH-----------------SLKKLNLSDRNLLEG--ALPSDLSSLSWLEC 950
Query: 432 KMLQSLPVLPFCLESLDLTGCNMLR---SLPELPLCLQYLNLEDCNMLRSLPELPLCLQL 488
LDL+ N + SL LP L+ L +E C L+SLPELP ++
Sbjct: 951 ---------------LDLSRNNFITVPTSLSRLPH-LRRLIVEHCKNLQSLPELPSSIKE 994
Query: 489 LTVRNCNRLQ--SLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLK 546
L +C L+ S P L+ K FEF+NC +
Sbjct: 995 LLANDCTSLETFSYPSSAYPLR------------------------KFGDFNFEFSNCFR 1030
Query: 547 LNGKANNKILADSLLRIRHMAIASLRLGYEMAINE---KLSELRGSLIVLPGSEIPDWFS 603
L G + + L IR +AS++ MA +E + E R +V PGS IP+WF+
Sbjct: 1031 LVGNEQSDTVEAILQEIR--LVASIQ--KSMAPSEHSARYGESRYDAVV-PGSRIPEWFT 1085
Query: 604 NQSSGSSICIQLPPHSSCRNLIGFAFCAVLDSK----KVDSDCFRYFYVSFQFDLEIKT- 658
+QS G SI ++LPP N IG A CAV K K+ + S F L+ T
Sbjct: 1086 HQSEGDSITVELPPGCYNTNSIGLAACAVFHPKFSMGKIGRSAYFSVNESGGFSLDNTTS 1145
Query: 659 --LSETKHVDLGYNSRYIEDLIDSDRVILGFKPCLNVGFPDGYHHTIATFKFFAERKFYK 716
S+ H+ GY R+I G V D AT K E
Sbjct: 1146 MHFSKADHIWFGY------------RLISG------VDLRDHLKVAFATSKVPGE----V 1183
Query: 717 IKRCGLCPVY 726
+K+CG+ VY
Sbjct: 1184 VKKCGVRLVY 1193
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 228/784 (29%), Positives = 349/784 (44%), Gaps = 169/784 (21%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYS- 78
GT+A+EG+ L+LS +K ++ FT M+ LR+ +FY + + + + + Y+
Sbjct: 535 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTE 594
Query: 79 -KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEK---- 133
K L +L LR L+WD YPL++LPSNF P+ L+EL + S++EQ WEG K
Sbjct: 595 CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 654
Query: 134 ------------------------------AC-----VPSSIQNFKYLSALSFKGCQSLR 158
C V SI K L L+ +GC++L+
Sbjct: 655 LKFIELSHSQHLIKTPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLK 714
Query: 159 SFPSNLHFVCPVTINFSYCVNLIEFPQISGKV---TRLYLGQSAIEEVPSSIECLTDLEV 215
SF S++H + S C L +FP++ G + + L L +AI+ +P SIE L L +
Sbjct: 715 SFLSSIHLESLQILTLSGCSKLKKFPEVQGPMDNFSELSLKGTAIKGLPLSIEYLNGLAL 774
Query: 216 LDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELP 275
L+L CK L+ + + KL+SL TLIL C L+ PEI E ME LK ++ D T + ELP
Sbjct: 775 LNLEECKSLESLPSCIFKLKSLKTLILSNCSRLKKLPEIGENMESLKELFLDDTGLRELP 834
Query: 276 SSFENLPGL------------------------EVLFVEDCSKLDNLPDNIGSLEYLYYI 311
SS E+L GL + L + CS+L LPD++GSL+ L +
Sbjct: 835 SSIEHLNGLVLLKLKNCKRLASLPESFCKLTSLQTLTLSGCSELKKLPDDMGSLQCLLKL 894
Query: 312 LAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ 371
A S I ++P+S+ L L+ L + CKG S + L L R P
Sbjct: 895 KANGSGIQEVPTSITLLTKLQVLSLAGCKGGGSKSKNLALSL-------------RASPT 941
Query: 372 EIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDC 431
+ LSSL +L+ L+ ++L D N+L+ LP L L ++C
Sbjct: 942 DGLRLSSLTVLH-----------------SLKKLNLSDCNLLEG--ALPSDLSSLSWLEC 982
Query: 432 KMLQSLPVLPFCLESLDLTGCNMLR--SLPELPLCLQYLNLEDCNMLRSLPELPLCLQLL 489
LDL+ + + SL LP L+ L LE C LRSLPELP ++ L
Sbjct: 983 ---------------LDLSRNSFITVPSLSRLPR-LERLILEHCKSLRSLPELPSSVEEL 1026
Query: 490 TVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKL-- 547
+C + LE +S S W S + EF NC +L
Sbjct: 1027 LANDC------------------TSLETISNPSSAYAWR----NSGHLYSEFCNCFRLVE 1064
Query: 548 NGKANNKILADSLLRIRHMAIASLRLGYEMAINEKLSELRGSL-----IVLPGSEIPDWF 602
N +++N +++LR +RL + + S+++ L V+PGS IP+WF
Sbjct: 1065 NEQSDN---VEAILR-------GIRLVASIPNSVAPSDIQRDLSIVYDAVVPGSSIPEWF 1114
Query: 603 SNQSSGSSICIQLPPHSSCRNLIGFAFCAVLDSKKVDSDCFRYFYVSFQFDLEIKTLSET 662
++QS S+ ++LPPH L+G A C V + R Y S E S
Sbjct: 1115 THQSERCSVTVELPPHWCNTRLMGLAVCVVFHANIGMGKFGRSAYFSMN---ESGGFSLH 1171
Query: 663 KHVDLGYNSRYIEDLIDSDRVILGFKPCLNVGFPDGYHHTIATFKFFAERKFYKIKRCGL 722
V + ++ +D + G++P F H +F + R +K+CG+
Sbjct: 1172 NTVSMHFSK--------ADHIWFGYRPLFGDVFSSSIDHLKVSFA-GSNRAGEVVKKCGV 1222
Query: 723 CPVY 726
V+
Sbjct: 1223 RLVF 1226
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089412|ref|XP_002335049.1| predicted protein [Populus trichocarpa] gi|222832778|gb|EEE71255.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 236/789 (29%), Positives = 364/789 (46%), Gaps = 166/789 (21%)
Query: 20 GTDAIEGIFLDLSKI-KGINLDPRAFTNMSNLRLFKFYVPKFYEIEK--LPSMSTEEQLS 76
GT+ IEGI LD+SK+ + I+L AF M LR FY + + +K LP
Sbjct: 1 GTEEIEGISLDMSKLSRQIHLKSDAFEMMDGLRFLNFYGRPYSQDDKMHLP--------- 51
Query: 77 YSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKAC- 135
P GL+YLP KLRYL WD +P ++LP F+ ++LVEL+LR SK+ + W G K
Sbjct: 52 ------PTGLEYLPNKLRYLRWDGFPSKSLPLAFRAEHLVELHLRESKLVKLWTGVKDVG 105
Query: 136 --------------------------------------VPSSIQNFKYLSALSFKGCQSL 157
VPSS+Q L ++ + C +L
Sbjct: 106 NLRTIDLSKSSYLTELPDLSMAKNLVSLRLKDCPSLTEVPSSLQYLDKLEYINLRCCYNL 165
Query: 158 RSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLD 217
RSFP L+ ++ C++L P IS + L L ++I+EVP SI L+VLD
Sbjct: 166 RSFPM-LYSKVLRKLSIYQCLDLTTCPTISQNMKSLRLWGTSIKEVPQSIT--GKLKVLD 222
Query: 218 LRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS 277
L GC ++ + FPE+ +E L + T I E+PSS
Sbjct: 223 LWGCSKMTK------------------------FPEVSGDIEEL---WLSETAIQEVPSS 255
Query: 278 FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSS 337
+ L L L + CSKL++LP+ +E L Y+ + + I +LPSS+ LR LD S
Sbjct: 256 IQFLTRLRELEMNGCSKLESLPEITVPMESLEYLGLSETGIKELPSSIQSLTRLRDLDMS 315
Query: 338 HCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLPAII 396
C LES P + + ++ L++S ++EIP +++SL+IL L G + LP+ I
Sbjct: 316 GCSKLESLPE-ITVPMESLVELNLSKTGIKEIPSISFKHMTSLKILKLDGTPLKELPSSI 374
Query: 397 KQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKM--LQSLPVL---PFCLESLDLTG 451
+ +++L+ + + + L+S PE+ + ++ L ++ ++ LP+ CL+ L L G
Sbjct: 375 QFLTRLQSLDMSGCSKLESFPEITVPMESLAELNLSKTGIKELPLSIKDMVCLKKLTLEG 434
Query: 452 CNMLRSLPELPL------CLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILL 505
+ ELPL CL+ L L +++LPELP L+ L R+C+ L+++ I+
Sbjct: 435 T----PIKELPLSIKDMVCLEELTLHGTP-IKALPELPPSLRYLRTRDCSSLETVTSII- 488
Query: 506 CLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGKANNKILADSLLRIRH 565
++ + ++FTNC K++ K L+ H
Sbjct: 489 -------------------------NIGRLQLRWDFTNCFKVDQKP--------LIEAMH 515
Query: 566 MAIASLRLGYEMAINEKLSELRGSLI--VLPGSEIPDWFSNQSSGSSICIQLPPHSSCRN 623
+ I S G E+ RG +I VLPGSEIP+WF ++ GSS+ IQLP S+C
Sbjct: 516 LKIQS---GEEIP--------RGGIIEMVLPGSEIPEWFGDKGVGSSLTIQLP--SNCHQ 562
Query: 624 LIGFAFCAVLDSKKVDSDCFRYFYVSFQFDLEIKTLSETKHVDLGYNSRYIEDLIDSDRV 683
L G AFC V D YF V ++ S + V + YN DSD +
Sbjct: 563 LKGIAFCLVFLLPLPSRDL--YFDVHVKYKNGEHFASRERQV-ISYNL----GTCDSDHM 615
Query: 684 ILGFKPCLNVGFPDGYHHTIATFKFFAERKFYKIKRCGLCPVYANPSETKDNTFTINFAT 743
IL ++ L P+ Y + + TFKF+ + K + G P E K ++F
Sbjct: 616 ILQYR--LVNQLPENYGNEV-TFKFYLLEEDNKGRMVG--DESQRPFELKSWGVYLHFDE 670
Query: 744 EVWKLDDLP 752
+ DLP
Sbjct: 671 NLPADTDLP 679
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 245/824 (29%), Positives = 351/824 (42%), Gaps = 179/824 (21%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKF----------YVPKFYEIEKLPSM 69
GT+A+EGIFLDLS K +N AFT M LRL K Y+ K I +
Sbjct: 526 GTEAVEGIFLDLSASKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDV 585
Query: 70 STEEQLSYS--KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQ 127
E Y+ K+ L +L LR L+W YPL++ PSNF P+ LVELN+ S+++Q
Sbjct: 586 WIERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQ 645
Query: 128 PWEGEKA----------------------CVPS-----------------SIQNFKYLSA 148
PWEG+K VP+ SI K L
Sbjct: 646 PWEGKKGFEKLKSIKLSHSQHLTKIPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIF 705
Query: 149 LSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRL---YLGQSAIEEVPS 205
L+ +GC+ L+SF S++H + S C L +FP++ G + L L +AI+ +P
Sbjct: 706 LNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPL 765
Query: 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY 265
SIE LT L +L+L+ CK L+ + S KL+SL TLIL C L+ PEI E ME L ++
Sbjct: 766 SIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELF 825
Query: 266 SDRTPITELPSSFENLPGLEVLFVEDCSKL------------------------DNLPDN 301
D + I ELPSS L GL L +++C KL +LPDN
Sbjct: 826 LDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLRTLTLCGCSELKDLPDN 885
Query: 302 IGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHI 361
+GSL+ L + A S + ++P S+ L L+ L + CKG ES R +
Sbjct: 886 LGSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMI----------- 934
Query: 362 SDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHL-EDFNMLQSLPELP 420
++ P E L S LY SL +I Q L L D + SL L
Sbjct: 935 --FSFHSSPTEELRLPSFSGLY-------SLRVLILQRCNLSEGALPSDLGSIPSLERLD 985
Query: 421 LCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLP 480
L S +P L+G + LRSL LE C L+SLP
Sbjct: 986 LSR-----------NSFITIP-----ASLSGLSRLRSL----------TLEYCKSLQSLP 1019
Query: 481 ELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFE 540
ELP ++ L +C L++ S SK DL+ F
Sbjct: 1020 ELPSSVESLNAHSCTSLETFT----------CSSSAYTSKKFGDLR------------FN 1057
Query: 541 FTNCLKLNGKANNKILADSLLRIRHMAIASLRLGYEMAINEKLSELRGSLIVLPGSEIPD 600
FTNC +L + I+ L I+ M+ L + I +E ++PG+ IP+
Sbjct: 1058 FTNCFRLGENQGSDIVGAILEGIQLMSSIPKFLVPDRGIPTPHNEYNA---LVPGNRIPE 1114
Query: 601 WFSNQSSGSSICIQLPPHSSCRNLIGFAFCAVLDSKKV-----DSDCFRYFYVSFQFDLE 655
WF +QS G S+ I+LP H L+G AFCA L+ K ++ + V + D
Sbjct: 1115 WFRHQSVGCSVNIELPQHWYNTKLMGLAFCAALNFKGAMDGNPGTEPSSFGLVCYLNDCF 1174
Query: 656 IKTLSETKHVDLGYNSRYI----EDLIDSDRVILGF------KPCLNVGFPDGYHHTIAT 705
++T G +S Y I+SD + + + CL F + +A+
Sbjct: 1175 VET---------GLHSLYTPPEGSKFIESDHTLFEYISLARLEICLGNWFRKLSDNVVAS 1225
Query: 706 FKFFAERKFYKIKRCGLCPVYANPSETKDNTFTINFATEVWKLD 749
F ++K+CG+ VY + KD + F T W D
Sbjct: 1226 FALTGSDG--EVKKCGIRLVYE--EDEKDGGCSFPFGT-TWPGD 1264
|
Source: Vitis labrusca Species: Vitis labrusca Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 779 | ||||||
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.732 | 0.441 | 0.285 | 5.4e-39 | |
| TAIR|locus:2118106 | 1219 | AT4G12010 [Arabidopsis thalian | 0.508 | 0.324 | 0.313 | 1e-36 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.530 | 0.347 | 0.302 | 2.7e-36 | |
| TAIR|locus:2081810 | 1226 | AT3G51570 [Arabidopsis thalian | 0.338 | 0.215 | 0.336 | 2.4e-30 | |
| TAIR|locus:2153207 | 1165 | AT5G45060 [Arabidopsis thalian | 0.341 | 0.228 | 0.337 | 1.3e-29 | |
| TAIR|locus:2118116 | 1895 | WRKY19 [Arabidopsis thaliana ( | 0.332 | 0.136 | 0.351 | 1.1e-27 | |
| TAIR|locus:2094498 | 1981 | AT3G25510 [Arabidopsis thalian | 0.564 | 0.222 | 0.279 | 4.5e-27 | |
| TAIR|locus:2115870 | 1234 | AT4G08450 [Arabidopsis thalian | 0.485 | 0.306 | 0.284 | 3.8e-26 | |
| TAIR|locus:2153072 | 1229 | AT5G51630 [Arabidopsis thalian | 0.536 | 0.340 | 0.264 | 1.5e-25 | |
| TAIR|locus:2151491 | 1123 | AT5G46450 [Arabidopsis thalian | 0.460 | 0.319 | 0.259 | 2.7e-25 |
| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 5.4e-39, P = 5.4e-39
Identities = 184/644 (28%), Positives = 284/644 (44%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK 79
GT +EGI L+LS+I + RAF +SNL+L FY +S + + ++
Sbjct: 523 GTQLVEGISLNLSEISEVFASDRAFEGLSNLKLLNFY-----------DLSFDGE---TR 568
Query: 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSS 139
V LPNGL YLP+KLRYL WD YPL+T+PS F P+ LVEL + S +E+ W+G
Sbjct: 569 VHLPNGLSYLPRKLRYLRWDGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDG-------- 620
Query: 140 IQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEF-PQISGK--VTRLYLG 196
IQ + L + C+ L P +N SYC +L+E P I ++ YL
Sbjct: 621 IQPLRNLKKMDLSRCKYLVEVPDLSKATNLEELNLSYCQSLVEVTPSIKNLKGLSCFYLT 680
Query: 197 QSA-IEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEIL 255
++++P I L LE + + GC LK R L L +E P +
Sbjct: 681 NCIQLKDIPIGI-ILKSLETVGMSGCSSLKHFPEISWNTRRLY----LSSTKIEELPSSI 735
Query: 256 EKMEHLKRI-YSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGXXXXXXXXXXX 314
++ L ++ SD + LPS +L L+ L ++ C +L+NLPD +
Sbjct: 736 SRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENLPDTLQNLTSLETLEVS 795
Query: 315 XXXXXXXXXXVALS-NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA-VREIPQE 372
V+ S +LR ++S +E P + LS + L IS+ + +P
Sbjct: 796 GCLNVNEFPRVSTSIEVLRISETS----IEEIPAR-ICNLSQLRSLDISENKRLASLPVS 850
Query: 373 IAYLSSLEILYLSGNN-FESLPAIIKQ-MSQLRFIHLEDFNMLQSLPELPLCLKYLHLID 430
I+ L SLE L LSG + ES P I Q MS LR+ L D ++ LPE L L ++
Sbjct: 851 ISELRSLEKLKLSGCSVLESFPLEICQTMSCLRWFDL-DRTSIKELPENIGNLVALEVLQ 909
Query: 431 CK--MLQSLPVLPFCLESLDL--------TGCNMLRSL-PELPLC--LQYLNLEDCNMXX 477
+++ P L L + T +L SL P L L+ L+L + NM
Sbjct: 910 ASRTVIRRAPWSIARLTRLQVLAIGNSFFTPEGLLHSLCPPLSRFDDLRALSLSNMNMTE 969
Query: 478 XXXXXXXXXXXXTVR-NCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAA 536
+ + N + +P + L L+ L + LQ P+ L
Sbjct: 970 IPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLNLNNCQR----LQALPDELPRGL 1025
Query: 537 ICFEFTNCLKL---NGKANN----KILADSLLRIRHMAIASLRLGYEMAINEKLSELRGS 589
+ +C L +G N K++A + ++ A + N KL +
Sbjct: 1026 LYIYIHSCTSLVSISGCFNQYCLRKLVASNCYKLDQAAQILIHR------NLKLESAKPE 1079
Query: 590 LIVLPGSEIPDWFSNQSSGSSICIQLPPHSSCRNLIGFAFCAVL 633
PGS+IP F++Q G S+ IQLP S +++GF+ C ++
Sbjct: 1080 HSYFPGSDIPTCFNHQVMGPSLNIQLPQSESSSDILGFSACIMI 1123
|
|
| TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 136/434 (31%), Positives = 214/434 (49%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK 79
GTD I GIFLD SK++ + L +AF M NL+ K Y + S E + K
Sbjct: 537 GTDKIRGIFLDTSKLRAMRLSAKAFQGMYNLKYLKIY-------DSHCSRGCEAEF---K 586
Query: 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSS 139
+ L GL +LP +L YLHW YPL+++P +F PKNLV+L L S++E+ W+ EK
Sbjct: 587 LHLRRGLSFLPNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDV---G 643
Query: 140 IQNFKYLS-ALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRL-YLGQ 197
+ + LS +++ + C L +N H + +N C +L + P + +L YL
Sbjct: 644 MLKWVDLSHSINLRQCLGL----ANAHNL--ERLNLEGCTSLKKLPSTINCLEKLIYLNL 697
Query: 198 ---SAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI 254
+++ +P I+ + L+ L L GC LK+ F + V ++LL ++ PE
Sbjct: 698 RDCTSLRSLPKGIKTQS-LQTLILSGCSSLKK----FPLISENVEVLLLDGTVIKSLPES 752
Query: 255 LEKMEHLKRI-YSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGXXXXXXXXXX 313
++ L + + + L S L L+ L + CS+L+ P+
Sbjct: 753 IQTFRRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLM 812
Query: 314 XXXXXXXXXXXVALSNMLR-SL--DSSHCKGLESF-PRTFLLGLSAMGLLHISDYAVREI 369
+ LSN+ SL SSH F P T LG S + L++S ++ ++
Sbjct: 813 DDTSITEMPKMMHLSNIKTFSLCGTSSHVSVSMFFMPPT--LGCSRLTDLYLSRCSLYKL 870
Query: 370 PQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLI 429
P I LSSL+ L LSGNN E+LP Q++ L++ L+ ML+SLP LP L+YL
Sbjct: 871 PDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAH 930
Query: 430 DCKMLQSL--PVLP 441
+C+ L++L P+ P
Sbjct: 931 ECESLETLANPLTP 944
|
|
| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 137/453 (30%), Positives = 221/453 (48%)
Query: 20 GTDAIEGIFLDLSK-IKG-INLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSY 77
GT + GI L+LS I+G IN+ RAF M NL+ +F+ P Y +
Sbjct: 552 GTRTLIGIDLELSGVIEGVINISERAFERMCNLQFLRFHHP--YG-----------DRCH 598
Query: 78 SKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVP 137
+ LP GL ++ +KLR LHW+ YPL LP F P+ LV++N+R S +E+ W+G + P
Sbjct: 599 DILYLPQGLSHISRKLRLLHWERYPLTCLPPKFNPEFLVKINMRDSMLEKLWDGNE---P 655
Query: 138 SSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLY--- 194
I+N K++ LSF C +L+ P + C++L+E P G T L
Sbjct: 656 --IRNLKWMD-LSF--CVNLKELPDFSTATNLQELRLINCLSLVELPSSIGNATNLLELD 710
Query: 195 -LGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPE 253
+ S++ ++PSSI LT+L+ L L C L ++ +SF + SL L L GC +L P
Sbjct: 711 LIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPS 770
Query: 254 ILEKMEHLKRIYSDR-TPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGXXXXXXXXX 312
+ + +LK++Y+D + + +LPSS N L+ L + +CS L P ++
Sbjct: 771 SIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLN 830
Query: 313 XXXXXXXXXXXXVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA-VREIPQ 371
+ L+SL S C L P T + + + L++ + + E+P
Sbjct: 831 LSGCLSLVKLPSIGNVINLQSLYLSDCSSLMELPFT-IENATNLDTLYLDGCSNLLELPS 889
Query: 372 EIAYLSSLEILYLSG-NNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC---LKYLH 427
I +++L+ LYL+G ++ + LP++++ L+ + L + L LP L YL
Sbjct: 890 SIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLD 949
Query: 428 LIDCKMLQSL-----PVLPFCLESLDLTGCNML 455
+ +C L L PV+P L LD C L
Sbjct: 950 VSNCSSLLELNLVSHPVVPDSL-ILDAGDCESL 981
|
|
| TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 100/297 (33%), Positives = 158/297 (53%)
Query: 24 IEGIFLDLSKIKG-INLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL 82
+ GIFL+++++K ++LD F +M LR K Y S ++ +K+ L
Sbjct: 549 VRGIFLNMNEMKREMSLDSCTFKSMCGLRYLKIY----------SSHCPQQCKPNNKINL 598
Query: 83 PNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEK-ACVP---- 137
P+GL++ K++RYLHW +PL+ +P +F P+NLV+L L SK+E+ W +K P
Sbjct: 599 PDGLNFPLKEVRYLHWLEFPLKEIPPDFNPQNLVDLKLPHSKIERIWSDDKHKDTPKLKW 658
Query: 138 ---SSIQNFKYLSALS---------FKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQ 185
S N +S LS KGC SL+S P ++ V + S C NL EF
Sbjct: 659 VNLSHSSNLWDISGLSKAQRLVFLNLKGCTSLKSLPE-INLVSLEILILSNCSNLKEFRV 717
Query: 186 ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC 245
IS + LYL ++I+E+P + L L +L+++GC +LK L++L LIL C
Sbjct: 718 ISQNLETLYLDGTSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLDDLKALKELILSDC 777
Query: 246 LNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNI 302
L++FP I E+++ L+ + D T ITE+P + L+ L + + +LPDNI
Sbjct: 778 WKLQNFPAICERIKVLEILRLDTTTITEIPM----ISSLQCLCLSKNDHISSLPDNI 830
|
|
| TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 101/299 (33%), Positives = 151/299 (50%)
Query: 20 GTDAIEGIFLDLSKIK-GINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYS 78
G + GIFLDLS++K +LD F NM NLR K Y S E L+ +
Sbjct: 553 GAANVRGIFLDLSEVKVETSLDREHFKNMRNLRYLKLY----------NSHCPHECLTNN 602
Query: 79 KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEG------- 131
K+ +P+GL+ K++R LHW +PL LP++F P NLV+L L S++E+ W+G
Sbjct: 603 KINMPDGLELPLKEVRCLHWLKFPLEELPNDFDPINLVDLKLPYSEIERLWDGVKDTPVL 662
Query: 132 --------EKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEF 183
K C S + + L L+ +GC SL S +++ T+ S C N EF
Sbjct: 663 KWVDLNHSSKLCSLSGLSKAQNLQRLNLEGCTSLESL-RDVNLTSLKTLTLSNCSNFKEF 721
Query: 184 PQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILL 243
P I + LYL ++I ++P ++ L L +L+++ CK L+ I T +L++L L+L
Sbjct: 722 PLIPENLKALYLDGTSISQLPDNVGNLKRLVLLNMKDCKVLETIPTCVSELKTLQKLVLS 781
Query: 244 GCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNI 302
GC L+ FPEI LK + D T I +P LP ++ L + L LP I
Sbjct: 782 GCSKLKEFPEI--NKSSLKILLLDGTSIKTMPQ----LPSVQYLCLSRNDHLIYLPAGI 834
|
|
| TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 102/290 (35%), Positives = 150/290 (51%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK 79
GT AIEGIFLD+ +K + +P F M NLRL K Y K EE+
Sbjct: 1149 GTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCSK-----------AEEKHG--- 1193
Query: 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKA--CVP 137
V P GL+YLP KLR LHW+ YPL +LP +F P+NLVELNL S ++ W+G+KA C
Sbjct: 1194 VSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTT 1253
Query: 138 -SSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQ-IS--GKVTRL 193
SS++ K + LS+ L P I+ C +L+ Q IS K+ L
Sbjct: 1254 NSSLEKLKKMR-LSYS--DQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFL 1310
Query: 194 YL-GQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFP 252
L G S +E +PS ++ L LEVL+L GC +L +F ++ V + +G ++ P
Sbjct: 1311 NLKGCSKLENIPSMVD-LESLEVLNLSGCSKLG----NFPEISPNVKELYMGGTMIQEIP 1365
Query: 253 EILEKMEHLKRIYSDRTP-ITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301
++ + L+++ + + + LP+S L LE L + C L+ PD+
Sbjct: 1366 SSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDS 1415
|
|
| TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 132/472 (27%), Positives = 210/472 (44%)
Query: 24 IEGIFLDLSKI--KGINLDPRAFTNMSNLRLFKFYVPKF--YEIEKLPSMSTEEQLSY-S 78
I G+ DLSK + N+ + MSNL+ +F + S++ ++
Sbjct: 547 IIGMDFDLSKNGEEVTNISEKGLQRMSNLQFIRFDGRSCARHSSNLTVVRSSDNNCAHPD 606
Query: 79 KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPS 138
V L+Y +++R LHW + LPS F P+ LVELN+ S WEG KA
Sbjct: 607 TVNALQDLNYQFQEIRLLHWINFRRLCLPSTFNPEFLVELNMPSSTCHTLWEGSKA---- 662
Query: 139 SIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYL--- 195
++N K++ LS+ SL+ P + YCV+L++ P GK+ +L +
Sbjct: 663 -LRNLKWMD-LSYS--ISLKELPDLSTATNLEELILKYCVSLVKVPSCVGKLGKLQVLCL 718
Query: 196 -GQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI 254
G ++I E+PS + +T L+ LDL C L + +S +L L L GCL L P
Sbjct: 719 HGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNLDL-GCLRLLKLPLS 777
Query: 255 LEKMEHLKR-IYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGXXXXXXXXXX 313
+ K +LK+ I + + + ELP N L+ L + +CS L LP +IG
Sbjct: 778 IVKFTNLKKFILNGCSSLVELPF-MGNATNLQNLDLGNCSSLVELPSSIGNAINLQNLDL 836
Query: 314 XXXXXXXXX-XXVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA-VREIPQ 371
+ + L LD C L P T + ++ + L +S + + E+P
Sbjct: 837 SNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIP-TSIGHVTNLWRLDLSGCSSLVELPS 895
Query: 372 EIAYLSSLEILYLSG-NNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELP---LCLKYLH 427
+ +S L++L L +N LP+ + L + L + L LP L+ L+
Sbjct: 896 SVGNISELQVLNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQELN 955
Query: 428 LIDCKMLQSLPVLP---FCLESLDLTGCNMLRSLPE-LPL-CLQYLNLEDCN 474
L +C L LP L +L L C L +LP + L L+ L+L DC+
Sbjct: 956 LCNCSNLVKLPSSIGNLHLLFTLSLARCQKLEALPSNINLKSLERLDLTDCS 1007
|
|
| TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 119/418 (28%), Positives = 193/418 (46%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK 79
GT + GI LD+ +I+ ++L AF M NLR K Y ++S +E K
Sbjct: 528 GTRKVLGISLDMDEIEELHLQVDAFKKMLNLRFLKLYTNT--------NISEKED----K 575
Query: 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSS 139
+ LP +YLP LR L W +P+R +PS+F PK LV+L + SK+E+ W+G
Sbjct: 576 LLLPKEFNYLPNTLRLLSWQRFPMRCMPSDFFPKYLVKLLMPGSKLEKLWDG-------- 627
Query: 140 IQNFKYLSALSFKGCQSLRSFPSNLHFVCPV-TINFSYCVNLIEFPQISGKVTRL-YLGQ 197
+ + L ++ G ++L+ FP NL + T++ +C++L+E P G + +L YL
Sbjct: 628 VMPLQCLKNMNLFGSENLKEFP-NLSLATNLETLSLGFCLSLVEVPSTIGNLNKLTYLNM 686
Query: 198 SA---IEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI 254
S +E+ P+ + L L L L GC RLK F + S ++ + L L +E FP
Sbjct: 687 SGCHNLEKFPADVN-LKSLSDLVLNGCSRLK----IFPAISSNISELCLNSLAVEEFPSN 741
Query: 255 LEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPD-NIGXXXXXXXXXX 313
L +E+L + +L + L L+ + + D L +PD ++
Sbjct: 742 LH-LENLVYLLIWGMTSVKLWDGVKVLTSLKTMHLRDSKNLKEIPDLSMASNLLILNLEQ 800
Query: 314 XXXXXXXXXXXVALSNMLRSLDSSHCKGLESFPRTF-LLGLSAMGLLHISDYAVREIPQE 372
L N++ LD S C LE+FP L L + L S + P
Sbjct: 801 CISIVELPSSIRNLHNLIE-LDMSGCTNLETFPTGINLQSLKRINLARCSRLKI--FPDI 857
Query: 373 IAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLID 430
+S L+ LS E +P I+ S+L+++ + NML+ + LK+L +D
Sbjct: 858 STNISELD---LSQTAIEEVPLWIENFSKLKYLIMGKCNMLEYVFLNISKLKHLKSVD 912
|
|
| TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 124/469 (26%), Positives = 208/469 (44%)
Query: 20 GTDAIEGIFLDLSKIKG-INLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYS 78
GT+ + GI L+ +I G +++D ++F M NL+ K + E S E LS
Sbjct: 519 GTETVLGISLNTLEINGTLSVDDKSFQGMHNLQFLKVF-------ENWRRGSGEGILS-- 569
Query: 79 KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPS 138
LP GL+ LP+KLR LHW +PLR +PSNFK + LV L + S++E+ WEG
Sbjct: 570 ---LPQGLNSLPRKLRLLHWYKFPLRCMPSNFKAEYLVNLEMAYSQLERLWEGT------ 620
Query: 139 SIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRL-YLGQ 197
Q L + ++L+ P + V ++ C +L+ P + +L L
Sbjct: 621 --QQLGSLKKMDLSKSENLKEIPDLSYAVNLEEMDLCSCKSLVTLPSSVRNLDKLRVLRM 678
Query: 198 SA---IEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKL-RSLVTLILLGCLNLEHFPE 253
S+ +E +P+ + L L++L+L C +L+ SF ++ R++ L L G E
Sbjct: 679 SSCSNVEVLPTDLN-LESLDLLNLEDCSQLR----SFPQISRNISILNLSGTAIDEESSL 733
Query: 254 ILEKMEHLKRIYSDRTPITELPSSF--ENLPGLEVLFVEDCSKLDNLPDNIGXXXXXXXX 311
+E M L + D P+ LPS+F E+L L + SKL+ L +
Sbjct: 734 WIENMSRLTHLRWDFCPLKSLPSNFRQEHLVSLHMTH----SKLEKLWEGAQPFGNLVNI 789
Query: 312 XXXXXXXXXXXXXVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IP 370
++ L +LD CK L + P + + LS + L++ E +P
Sbjct: 790 DLSLSEKLKEFPNLSKVTNLDTLDLYGCKSLVTVPSS-IQSLSKLTELNMRRCTGLEALP 848
Query: 371 QEIAYLSSLEILYLSG-NNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELP---LCLKYL 426
++ L SL L LSG + + P I + + +L L D ++ +P L L
Sbjct: 849 TDVN-LESLHTLDLSGCSKLTTFPKISRNIERL----LLDDTAIEEVPSWIDDFFELTTL 903
Query: 427 HLIDCKMLQSLP--VLPF-CLESLDLTGCNMLRSLPELPLCLQYLNLED 472
+ CK L+++ + C+E + + C L + + + L D
Sbjct: 904 SMKGCKRLRNISTSICELKCIEVANFSDCERLTEFDDASMVRRILRTID 952
|
|
| TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 106/409 (25%), Positives = 181/409 (44%)
Query: 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK 79
GT + GI LD+++ G+ + AF M NL FY + ++ +++
Sbjct: 527 GTKKVLGIALDINETDGLYIHESAFKGMRNLLFLNFYTKQ------------KKDVTW-- 572
Query: 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSS 139
L G D+LP KLR L W+ YPLR +PSNF+P+NLV+L + SK+E+ W+G
Sbjct: 573 -HLSEGFDHLPPKLRLLSWEKYPLRCMPSNFRPENLVKLQMCESKLEKLWDG-------- 623
Query: 140 IQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT-INFSYCVNLIEFP---QISGKVTRLYL 195
+ + L + +G ++L+ P +L + ++ S C +L+E Q ++ L +
Sbjct: 624 VHSLTGLRNMDLRGSENLKEIP-DLSLATNLKKLDVSNCTSLVELSSTIQNLNQLEELQM 682
Query: 196 GQSA-IEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFP-E 253
+ +E +P I L L L+L GC +L+ SF + + ++ + L +E FP E
Sbjct: 683 ERCENLENLPIGIN-LESLYCLNLNGCSKLR----SFPDISTTISELYLSETAIEEFPTE 737
Query: 254 I-LEKMEHL-------KRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGXX 305
+ LE + +L ++++ P+T L + P L LF+ D L LP +
Sbjct: 738 LHLENLYYLGLYDMKSEKLWKRVQPLTPLMTMLS--PSLTKLFLSDIPSLVELPSSFQNL 795
Query: 306 XXXXXXXXXXXXXXXXXXXVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA 365
+L LD S C L SFP + + L+ +
Sbjct: 796 HNLEHLNIARCTNLETLPTGVNLELLEQLDFSGCSRLRSFPD---ISTNIFSLV-LDGTG 851
Query: 366 VREIPQEIAYLSSLEILYLSG-NNFESLPAIIKQMSQLRFIHLEDFNML 413
+ E+P I L L + G NN + + I ++ +L + D L
Sbjct: 852 IEEVPWWIEDFYRLSFLSMIGCNNLQGVSLNISKLEKLETVDFSDCEAL 900
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00190624 | tir-nbs-lrr resistance protein (1436 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 779 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 7e-41 | |
| PRK15387 | 788 | PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss | 3e-09 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 5e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 6e-07 | |
| PRK15387 | 788 | PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss | 2e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-06 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 8e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 0.001 | |
| pfam07725 | 20 | pfam07725, LRR_3, Leucine Rich Repeat | 0.003 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 7e-41
Identities = 171/665 (25%), Positives = 266/665 (40%), Gaps = 203/665 (30%)
Query: 19 KGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYS 78
GT + GI LD+ +I +++ AF M NL KFY K+ +Q
Sbjct: 529 TGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKW------------DQKKEV 576
Query: 79 KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPS 138
+ LP G DYLP KLR L WD YPLR +PSNF+P+NLV+L ++ SK+E+ W+G
Sbjct: 577 RWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG------- 629
Query: 139 SIQNFKYLSALSFKGCQSLRSFP-----SNLHFVCPVTINFSYCVNLIEFPQISGKVTRL 193
+ + L + +G ++L+ P +NL T+ S C +L+E
Sbjct: 630 -VHSLTGLRNIDLRGSKNLKEIPDLSMATNLE-----TLKLSDCSSLVE----------- 672
Query: 194 YLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPE 253
+PSSI+ L LE LD+ C+ L+ + T L+SL L L GC L+ FP
Sbjct: 673 ---------LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP- 721
Query: 254 ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILA 313
++ NI L L
Sbjct: 722 -------------------------------------------DISTNISWL-DLD---- 733
Query: 314 AASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI 373
+AI + PS++ L N+ L L M + + P
Sbjct: 734 -ETAIEEFPSNLRLENL------------------DELILCEMKSEKLWERVQPLTPLMT 774
Query: 374 AYLSSLEILYLSGN-NFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCK 432
SL L+LS + LP+ I+ + +L ++L + +C
Sbjct: 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKL---------------------EHLEIENCI 813
Query: 433 MLQSLPV---LPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLC---- 485
L++LP L LESLDL+GC+ LR+ P++ + LNL + E+P
Sbjct: 814 NLETLPTGINLES-LESLDLSGCSRLRTFPDISTNISDLNLSRT----GIEEVPWWIEKF 868
Query: 486 --LQLLTVRNCNRLQSL-PEI--LLCLQELDASVLEKLSKHS--------PDLQWAPESL 532
L L + CN LQ + I L L+ +D S L++ S S
Sbjct: 869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSK 928
Query: 533 KSAAICFEFTNCLKLNGKANNKILADSLLRIRHMAIASLRLGYEMAINEKLSELRGSLIV 592
+ +C F NC L+ +A LL+ + + ++
Sbjct: 929 LPSTVCINFINCFNLDQEA--------LLQQQSIFKQ---------------------LI 959
Query: 593 LPGSEIPDWFSNQSSGSS-ICIQLPPHSSCRNLIGFAFCAVLDSKKVDSDCFRYFYVSFQ 651
L G E+P +F+++++G+S I L S C+ F CAV VDS+ F F +S
Sbjct: 960 LSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAV-----VDSESF--FIISVS 1012
Query: 652 FDLEI 656
FD+++
Sbjct: 1013 FDIQV 1017
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (145), Expect = 3e-09
Identities = 65/171 (38%), Positives = 78/171 (45%), Gaps = 23/171 (13%)
Query: 359 LHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLR-----FIHLEDF--- 410
L I D + +P L +LE+ SGN SLP + + +L HL
Sbjct: 227 LVIPDNNLTSLPALPPELRTLEV---SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG 283
Query: 411 --------NMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELP 462
N L SLP LP L+ L + D L SLP LP L L N L SLP LP
Sbjct: 284 LCKLWIFGNQLTSLPVLPPGLQELSVSD-NQLASLPALPSELCKL-WAYNNQLTSLPTLP 341
Query: 463 LCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDAS 513
LQ L++ D N L SLP LP L L N NRL SLP + L+EL S
Sbjct: 342 SGLQELSVSD-NQLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVS 390
|
Length = 788 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (127), Expect = 5e-07
Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 44/249 (17%)
Query: 238 VTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDN 297
+T ++L L+ PE L+ ++K +Y++ +T +P++
Sbjct: 201 ITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIPAT-------------------- 238
Query: 298 LPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMG 357
LPD I +E + + I++LP L + L+SLD H K + P L
Sbjct: 239 LPDTIQEMEL------SINRITELPER--LPSALQSLDLFHNK-ISCLPENLPEELRY-- 287
Query: 358 LLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP 417
L + D ++R +P + S + L + N+ +LP + L+ + + N L SLP
Sbjct: 288 -LSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLPP--GLKTLEAGE-NALTSLP 341
Query: 418 E-LPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPE-LPLCLQYLNLEDCNM 475
LP L+ L + ++ LP + +LD++ N L +LPE LP LQ + N+
Sbjct: 342 ASLPPELQVLDVSKNQITVLPETLPPTITTLDVSR-NALTNLPENLPAALQIMQASRNNL 400
Query: 476 LRSLPE-LP 483
+R LPE LP
Sbjct: 401 VR-LPESLP 408
|
Length = 754 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 7/205 (3%)
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
+ L L + IE +PS + L +L+ LDL L + L +L L L G +
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KI 198
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYL 308
P +E + L+ + I EL SS NL L L + +KL++LP++IG+L L
Sbjct: 199 SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL-SNNKLEDLPESIGNLSNL 257
Query: 309 YYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE 368
+ + + IS + S +L+N LR LD S + P LL L L + + +
Sbjct: 258 ETLDLSNNQISSISSLGSLTN-LRELDLSGNSLSNALPLIALLLLL---LELLLNLLLTL 313
Query: 369 IPQEIAYLSSLEILYLSGNNFESLP 393
E+ S L + N S P
Sbjct: 314 KALELKLNSILLNNNILSNGETSSP 338
|
Length = 394 |
| >gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 2e-06
Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 377 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQS 436
S L+ L +S N SLP + ++ +L + N L SLP LP LK L ++ L S
Sbjct: 342 SGLQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKEL-IVSGNRLTS 396
Query: 437 LPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCN- 495
LPVLP L+ L ++G N L SLP LP L L++ N L LPE + L T N
Sbjct: 397 LPVLPSELKELMVSG-NRLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEG 454
Query: 496 ------RLQSLPEI 503
LQ+L EI
Sbjct: 455 NPLSERTLQALREI 468
|
Length = 788 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 32/274 (11%)
Query: 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250
L L + + S + LT+L LDL + I L+S + + L +E
Sbjct: 96 PSLDLNLNRLRSNISELLELTNLTSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNKIES 154
Query: 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY 310
P L + +LK + +++LP NL L L + +K+ +LP I L L
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEE 213
Query: 311 ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP 370
+ + ++I +L SS+ S+ K L L +S+ + ++P
Sbjct: 214 LDLSNNSIIELLSSL-----------SNLKNLS--------------GLELSNNKLEDLP 248
Query: 371 QEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLID 430
+ I LS+LE L LS N S+ ++ ++ LR + L N L + L L L +
Sbjct: 249 ESIGNLSNLETLDLSNNQISSISSLGS-LTNLRELDL-SGNSLSNALPLIALLLLLLELL 306
Query: 431 CKMLQSLPVLPFCLESLDLT---GCNMLRSLPEL 461
+L +L L L S+ L N S PE
Sbjct: 307 LNLLLTLKALELKLNSILLNNNILSNGETSSPEA 340
|
Length = 394 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 27/209 (12%)
Query: 202 EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHL 261
E+P+ I + L+VLDL G + +I S L SL L L + P L +M+ L
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214
Query: 262 KRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS- 319
K IY ++ E+P L L L + + +P ++G+L+ L Y+ + +S
Sbjct: 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274
Query: 320 QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSL 379
+P S+ L SLD L G EIP+ + L +L
Sbjct: 275 PIPPSIFSLQKLISLD---------LSDNSLSG---------------EIPELVIQLQNL 310
Query: 380 EILYLSGNNFE-SLPAIIKQMSQLRFIHL 407
EIL+L NNF +P + + +L+ + L
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQVLQL 339
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 76/292 (26%), Positives = 123/292 (42%), Gaps = 48/292 (16%)
Query: 151 FKGCQSLRSFP-SNLHFVCPVTINFSYCV-------NLI--EFPQISGKVTRLYL----G 196
F SLR SN +F + + N++ E P G + L + G
Sbjct: 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173
Query: 197 QSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL--EHFPEI 254
+ ++P+S+ LT LE L L + + +I +++SL I LG NL E EI
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL-KWIYLGYNNLSGEIPYEI 232
Query: 255 --LEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYIL 312
L + HL +Y++ T +PSS NL L+ LF+ +P +I SL+ L
Sbjct: 233 GGLTSLNHLDLVYNNLT--GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL---- 286
Query: 313 AAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHI-SDYAVREIPQ 371
IS S +LS + L ++ L + +LH+ S+ +IP
Sbjct: 287 -----ISLDLSDNSLSGEIPEL---------------VIQLQNLEILHLFSNNFTGKIPV 326
Query: 372 EIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC 422
+ L L++L L N F +P + + + L + L N+ +PE LC
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLC 377
|
Length = 968 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 13/232 (5%)
Query: 260 HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS 319
+ + + LPSS L L++L S LD +N+ +L L + + +
Sbjct: 48 NRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLD-GSENLLNLLPLPSLDLNLNRLR 106
Query: 320 QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGL--LHISDYAVREIPQEIAYLS 377
S + L SLD + P L+GL L L +SD + +P + L
Sbjct: 107 SNISELLELTNLTSLDLD-NNNITDIPP--LIGLLKSNLKELDLSDNKIESLPSPLRNLP 163
Query: 378 SLEILYLSGNNFESLPAIIKQMSQLRFIHLED--FNMLQSLPELPLCLKYLHLIDCKMLQ 435
+L+ L LS N+ LP ++ +S L + L + L EL L+ L L + +++
Sbjct: 164 NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE 223
Query: 436 SLPVLPFCLESLDLTGCNM----LRSLPELPLCLQYLNLEDCNMLRSLPELP 483
L L L N L L+ L+L N + S+ L
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL-SNNQISSISSLG 274
|
Length = 394 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 10/207 (4%)
Query: 202 EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHL 261
E+P ++ +L VLDL I C +L LIL P+ L L
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406
Query: 262 KRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPD---NIGSLEYLYYILAAASA 317
+R+ + ELPS F LP + L + + + + ++ SL+ L LA
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS--LARNKF 464
Query: 318 ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR-EIPQEIAYL 376
LP S S L +LD S + + PR LS + L +S+ + EIP E++
Sbjct: 465 FGGLPDSFG-SKRLENLDLSRNQFSGAVPRKL-GSLSELMQLKLSENKLSGEIPDELSSC 522
Query: 377 SSLEILYLSGNNFE-SLPAIIKQMSQL 402
L L LS N +PA +M L
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVL 549
|
Length = 968 |
| >gnl|CDD|191828 pfam07725, LRR_3, Leucine Rich Repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 114 NLVELNLRCSKVEQPWEGEK 133
NLVELNLR SK+E+ WEG K
Sbjct: 1 NLVELNLRYSKLEKLWEGTK 20
|
This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model. Length = 20 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 779 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.96 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.95 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.93 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.82 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.8 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.72 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.71 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.7 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.65 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.54 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.53 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.52 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.44 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.32 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.25 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.97 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.97 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.95 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.94 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.92 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.87 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.85 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.84 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.8 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.76 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.67 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.65 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.64 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.5 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.43 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.42 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.36 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.34 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.31 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.18 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.0 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.89 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.78 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.75 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.71 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.59 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.5 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.49 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.45 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.35 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.32 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.31 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.31 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.27 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.16 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.93 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.14 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.83 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.82 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.81 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.2 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.96 | |
| PF07725 | 20 | LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le | 94.45 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.18 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.15 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.62 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 92.61 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.29 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 91.63 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.57 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 84.41 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 84.2 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 84.2 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 82.78 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 80.57 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=512.65 Aligned_cols=571 Identities=29% Similarity=0.467 Sum_probs=388.6
Q ss_pred eeecchhhHHHhhcCcccccEEEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecC
Q 004022 4 FCFRLTHSLFLFFFYKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLP 83 (779)
Q Consensus 4 ~c~~~~~i~~vL~~~~g~~~i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~ 83 (779)
+-|+++||++||++++|+++|++|++|++......+.+++|.+|++|++|.++.+.+. ........+|
T Consensus 514 ~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~------------~~~~~~~~lp 581 (1153)
T PLN03210 514 FLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWD------------QKKEVRWHLP 581 (1153)
T ss_pred eEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccc------------ccccceeecC
Confidence 5688999999999999999999999999999989999999999999999999877542 0112346789
Q ss_pred CCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCC
Q 004022 84 NGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSN 163 (779)
Q Consensus 84 ~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~ 163 (779)
+++..+|.+||.|+|.+|+++.+|..|.+.+|++|+|++|+++.+|+|.+ .+++|+.|+|++|..++.+|.+
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~--------~l~~Lk~L~Ls~~~~l~~ip~l 653 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH--------SLTGLRNIDLRGSKNLKEIPDL 653 (1153)
T ss_pred cchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccc--------cCCCCCEEECCCCCCcCcCCcc
Confidence 99999999999999999999999999999999999999999999877754 8999999999999889999999
Q ss_pred CCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecc
Q 004022 164 LHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILL 243 (779)
Q Consensus 164 ~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~ 243 (779)
..+++|+.|++++|..+ ..+|.+++++++|+.|++++|..++.+|..+ ++++|+.|+++
T Consensus 654 s~l~~Le~L~L~~c~~L--------------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 654 SMATNLETLKLSDCSSL--------------------VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred ccCCcccEEEecCCCCc--------------------cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 99999999999999877 7788889999999999999999999999866 69999999999
Q ss_pred cccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCc
Q 004022 244 GCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPS 323 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~ 323 (779)
+|..++.+|.. ..+|++|++++|.++.+|..+ .+++|+.|.+.++.... ++..+..+. +.
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~---------------~~ 772 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPLT---------------PL 772 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh-ccccccccc---------------hh
Confidence 99988888864 468999999999999999865 58889999887754321 111111110 00
Q ss_pred cccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCC-CccCCcccCCCCCccEEEEecCC-CccCChhccCCCC
Q 004022 324 SVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA-VREIPQEIAYLSSLEILYLSGNN-FESLPAIIKQMSQ 401 (779)
Q Consensus 324 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~~p~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~ 401 (779)
.....++|+.|++++|.....+|.. +..+++|+.|++++|. +..+|..+ .+++|+.|++++|. +..+|.. .++
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred hhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccc
Confidence 1112344555555555544444443 3455555555555553 33354443 45555555555542 3333321 234
Q ss_pred CCEEEcCCCCCCCcCCC---CCCCccEEEEecCCCCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCcCCcc
Q 004022 402 LRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRS 478 (779)
Q Consensus 402 L~~L~Ls~n~~~~~~~~---~~~~L~~L~l~~c~~l~~lp~l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~~L~~ 478 (779)
|+.|++++|.+. .+|. .+++|+.|++++|+.++.+|....+ +++|+.|++++|..|..
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~------------------L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK------------------LKHLETVDFSDCGALTE 908 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccc------------------ccCCCeeecCCCccccc
Confidence 444444444332 1221 1122222444444444443321100 13455555555555543
Q ss_pred cCCCCCCccEEEEecCCCCCCccccccCCcccchhhhhhhccCCCCCcccccccccccceeecccccccCcccchhhhHH
Q 004022 479 LPELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGKANNKILAD 558 (779)
Q Consensus 479 l~~~~~sL~~L~i~~C~~L~~lp~~l~~L~~L~~~~~~~l~~~~p~l~~lp~~l~~~l~~l~~~~C~~l~~~~~~~i~~~ 558 (779)
++-.........+.+ + ... . + ++...+.|.+|.++++.++.
T Consensus 909 ~~l~~~~~~~~~~~~---------------------n--~~~------~----~-p~~~~l~f~nC~~L~~~a~l----- 949 (1153)
T PLN03210 909 ASWNGSPSEVAMATD---------------------N--IHS------K----L-PSTVCINFINCFNLDQEALL----- 949 (1153)
T ss_pred ccCCCCchhhhhhcc---------------------c--ccc------c----C-CchhccccccccCCCchhhh-----
Confidence 321000000000000 0 000 0 1 12345778999999976642
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhhhcccccccEEEecCCCCCccccccCCCceEE-EECCCCCCCCCcceeEEEEEEccCC
Q 004022 559 SLLRIRHMAIASLRLGYEMAINEKLSELRGSLIVLPGSEIPDWFSNQSSGSSIC-IQLPPHSSCRNLIGFAFCAVLDSKK 637 (779)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~gf~~c~v~~~~~ 637 (779)
+. + .....+++||.+||+||.||+.|++++ |++|+.|....|.||++|+|+++..
T Consensus 950 ---~~------------------~---~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~ 1005 (1153)
T PLN03210 950 ---QQ------------------Q---SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSES 1005 (1153)
T ss_pred ---cc------------------c---ccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCc
Confidence 10 0 011238899999999999999999999 9999999988999999999998776
Q ss_pred CCCCc-ceeeEeeEEEecccccc---CCCCeeEEecccccccccccccceEEceeecc-----ccCC-CCCceeEEEEEE
Q 004022 638 VDSDC-FRYFYVSFQFDLEIKTL---SETKHVDLGYNSRYIEDLIDSDRVILGFKPCL-----NVGF-PDGYHHTIATFK 707 (779)
Q Consensus 638 ~~~~~-~~~~~~~~~~~~~~~~~---~~~dh~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~-~~~~~~~~~~f~ 707 (779)
..... ...+.+.|.|....+.. ...+|+|+.|... .|.+ .|+-+. +... ...|+|+.+.|+
T Consensus 1006 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 1076 (1153)
T PLN03210 1006 FFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKG--------SHLV-IFDCCFPLNEDNAPLAELNYDHVDIQFR 1076 (1153)
T ss_pred cccCCCceeEEEEEEEECCCCCccccCCCceeEeeeccc--------cceE-EecccccccccccchhccCCceeeEEEE
Confidence 43221 12566778887776542 3478888887542 1211 111111 1101 125888889998
Q ss_pred EccccceeEEEeeeeeeeecCCCC
Q 004022 708 FFAERKFYKIKRCGLCPVYANPSE 731 (779)
Q Consensus 708 f~~~~~~~~vk~CGv~lvy~~~~~ 731 (779)
|......++||+||||++|.++..
T Consensus 1077 ~~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1077 LTNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred EecCCCCeEEEeeeEEEeccCCCc
Confidence 877655579999999999966543
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=420.99 Aligned_cols=486 Identities=20% Similarity=0.220 Sum_probs=275.7
Q ss_pred EEEeecccccccccChhhhhcccCCceEeeccCcccc-cc-----cCCCCccccccccce-eecCCCCCCCCCCceEEEc
Q 004022 26 GIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYE-IE-----KLPSMSTEEQLSYSK-VQLPNGLDYLPKKLRYLHW 98 (779)
Q Consensus 26 ~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~-i~-----~l~~l~~~~~~~~~~-~~l~~~l~~l~~~L~~L~l 98 (779)
...||++++......+.+|..+++|++|++++|.+++ ++ .+++|..+....... ..+|. ..+ .+|++|++
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l-~~L~~L~L 147 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI-PNLETLDL 147 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--ccc-CCCCEEEC
Confidence 3445555555444457789999999999999998852 21 112222222111110 01221 112 34555555
Q ss_pred cCCCCC-CCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEec
Q 004022 99 DTYPLR-TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFS 175 (779)
Q Consensus 99 ~~n~l~-~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~ 175 (779)
++|.+. .+|..+ .+++|++|+|++|.+... +|.+++++++|++|+|++|.+...+|. +..+++|+.|+++
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-------IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCccccc-------CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 555543 334444 455555555555554432 455555555555555555554444443 3345555555555
Q ss_pred CCcCccccCCc---CCCccEEEecCcCCc-ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 176 YCVNLIEFPQI---SGKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 176 ~~~~l~~~~~~---~~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
+|.....+|.. +.+|+.|++++|.+. .+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 55544444432 234555555555543 44445555555555555555555555555555555555555555555555
Q ss_pred chhhhcCccCcEeecCCcCCC-cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccCcc
Q 004022 252 PEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVALSN 329 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~ 329 (779)
|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+. .+.++...+.+|..+..++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 555555555555555555554 33444555555555555555555555555555555555 4444444444555555555
Q ss_pred ccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhccCCCCCCEEEc
Q 004022 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHL 407 (779)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 407 (779)
+|+.|++++|.+.+..|.. +..+++|+.|++++|.++. +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 5555555555555544433 3456666777777666664 5666666677777777777666 44455666777777777
Q ss_pred CCCCCCCcCCCCC--CCccEEEEecCCCCCCCCC----CCCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCcc
Q 004022 408 EDFNMLQSLPELP--LCLKYLHLIDCKMLQSLPV----LPFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRS 478 (779)
Q Consensus 408 s~n~~~~~~~~~~--~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~~ 478 (779)
++|.+.+.+|..+ .+|+.|++++|.....+|. ++ +|++|++++|.+.+.+|.. +++|++|++++|.....
T Consensus 460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 538 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538 (968)
T ss_pred cCceeeeecCcccccccceEEECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence 7777766666533 5677777777766555543 22 6777888888777777753 36788888888776666
Q ss_pred cCCC---CCCccEEEEecCCCCCCccccc---cCCcccchhhhhhhccCCCC
Q 004022 479 LPEL---PLCLQLLTVRNCNRLQSLPEIL---LCLQELDASVLEKLSKHSPD 524 (779)
Q Consensus 479 l~~~---~~sL~~L~i~~C~~L~~lp~~l---~~L~~L~~~~~~~l~~~~p~ 524 (779)
+|.. +++|+.|++++|.....+|..+ .+|+.|++++| .+.+.+|.
T Consensus 539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N-~l~~~~p~ 589 (968)
T PLN00113 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN-HLHGSLPS 589 (968)
T ss_pred CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC-cceeeCCC
Confidence 6643 4678888888877666778655 35667777766 34444443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=403.44 Aligned_cols=464 Identities=20% Similarity=0.239 Sum_probs=400.1
Q ss_pred eeccccccc-ccChhhhhcccCCceEeeccCcccccc---cCCCCccccccccce-eecCCCCCCCCCCceEEEccCCCC
Q 004022 29 LDLSKIKGI-NLDPRAFTNMSNLRLFKFYVPKFYEIE---KLPSMSTEEQLSYSK-VQLPNGLDYLPKKLRYLHWDTYPL 103 (779)
Q Consensus 29 Ld~s~~~~~-~l~~~~f~~l~~Lr~L~l~~n~l~~i~---~l~~l~~~~~~~~~~-~~l~~~l~~l~~~L~~L~l~~n~l 103 (779)
||++++... .++...|.++++||+|++++|.+++.- .++++..+....... ..+|..+..+ .+|++|++++|.+
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~l 176 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVL 176 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC-CCCCEEECccCcc
Confidence 566666543 677778889999999999999987422 345555555444332 3567778888 5999999999998
Q ss_pred C-CCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCc
Q 004022 104 R-TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNL 180 (779)
Q Consensus 104 ~-~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l 180 (779)
. .+|..+ ++++|++|+|++|.+... +|..++++++|++|+|++|.+...+|. +.++++|++|++++|...
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQ-------IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCc-------CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 5 678777 899999999999998764 899999999999999999998878876 667999999999999887
Q ss_pred cccCCcC---CCccEEEecCcCCc-ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhh
Q 004022 181 IEFPQIS---GKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILE 256 (779)
Q Consensus 181 ~~~~~~~---~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 256 (779)
..+|..+ .+|+.|++++|.+. .+|.++.++++|++|++++|.+.+.+|..+..+++|+.|++++|...+..|..+.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 7777654 57899999999985 6788999999999999999999999999999999999999999999999999999
Q ss_pred cCccCcEeecCCcCCC-cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccCccccCee
Q 004022 257 KMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSL 334 (779)
Q Consensus 257 ~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L 334 (779)
.+++|+.|++++|.+. .+|..++.+++|+.|++++|++.+.+|..+..+++|+. .+.++...+.+|..+..+++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 9999999999999998 68888999999999999999999999999999899988 777777778899999999999999
Q ss_pred eccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhccCCCCCCEEEcCCCCC
Q 004022 335 DSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNM 412 (779)
Q Consensus 335 ~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~ 412 (779)
++++|.+.+..|.. +..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+. .+|.. ...++|+.|++++|.+
T Consensus 410 ~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 410 RLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQF 487 (968)
T ss_pred ECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCcc
Confidence 99999998877765 6789999999999999988 6777888999999999999987 55554 4568999999999999
Q ss_pred CCcCCCC---CCCccEEEEecCCCCCCCCC----CCCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCcccCCC
Q 004022 413 LQSLPEL---PLCLKYLHLIDCKMLQSLPV----LPFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPEL 482 (779)
Q Consensus 413 ~~~~~~~---~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~~~ 482 (779)
.+.+|.. +++|+.|++++|.....+|. ++ +|++|++++|.+.+.+|.. +++|+.|++++|.....+|..
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK-KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCcc-CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 9988874 47899999999988777764 33 8999999999999998874 478999999999988888854
Q ss_pred ---CCCccEEEEecCCCCCCcccc
Q 004022 483 ---PLCLQLLTVRNCNRLQSLPEI 503 (779)
Q Consensus 483 ---~~sL~~L~i~~C~~L~~lp~~ 503 (779)
+++|+.|++++|+-...+|..
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCc
Confidence 468999999999887788854
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-31 Score=279.02 Aligned_cols=376 Identities=19% Similarity=0.155 Sum_probs=300.3
Q ss_pred EEEeecccccccccChhhhhccc--CCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCC
Q 004022 26 GIFLDLSKIKGINLDPRAFTNMS--NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPL 103 (779)
Q Consensus 26 ~i~Ld~s~~~~~~l~~~~f~~l~--~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l 103 (779)
+..||+++.+.-.++...+.+.- .-++|++++|.++.+ -+.++.++| +|+.+++..|.+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i------------------d~~~f~nl~-nLq~v~l~~N~L 114 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI------------------DFEFFYNLP-NLQEVNLNKNEL 114 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccC------------------cHHHHhcCC-cceeeeeccchh
Confidence 45578887765555555555543 345599999988521 133556675 999999999999
Q ss_pred CCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCCCCCCCCCcEEEecCCcCcc
Q 004022 104 RTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPSNLHFVCPVTINFSYCVNLI 181 (779)
Q Consensus 104 ~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~~~~l~~L~~L~L~~~~~l~ 181 (779)
+.+|... ...+|+.|+|.+|.|+.+ -..++..++.|+.|||+.|.+.. ..|.+..-.++++|+|++|.+..
T Consensus 115 t~IP~f~~~sghl~~L~L~~N~I~sv-------~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~ 187 (873)
T KOG4194|consen 115 TRIPRFGHESGHLEKLDLRHNLISSV-------TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT 187 (873)
T ss_pred hhcccccccccceeEEeeeccccccc-------cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc
Confidence 9999887 556799999999999986 44567789999999999998544 23345566899999999998765
Q ss_pred cc---CCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhc
Q 004022 182 EF---PQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEK 257 (779)
Q Consensus 182 ~~---~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~ 257 (779)
.- .+.+.+|..|.|++|.|+.+|. .|.+|++|+.|+|..|.+...-...|.++++|+.|.|..|.+...-...|..
T Consensus 188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG 267 (873)
T ss_pred cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence 32 3445578899999999999997 5667999999999998865443556889999999999999988877788899
Q ss_pred CccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC-ccccCccccCeee
Q 004022 258 MEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP-SSVALSNMLRSLD 335 (779)
Q Consensus 258 l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp-~~l~~l~~L~~L~ 335 (779)
+.++++|+|..|.++.+.. |+.+++.|+.|++++|.+...-++++.-.++|+++....+.+..++ ..+..+..|++|+
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 9999999999999998865 5889999999999999998888888888899999555555566555 5578899999999
Q ss_pred ccCCCCCCccChhhccCCCCCcEEEecCCCCcc-C---CcccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCCC
Q 004022 336 SSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-I---PQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 336 l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~---p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n 410 (779)
+++|.+... ....+.++.+|++|+|++|.+.- + ...+..+++|+.|++.||++..+| ..+.++++|++|+|.+|
T Consensus 348 Ls~Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 348 LSHNSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred ccccchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 999987654 33447889999999999998765 2 334778999999999999999999 67999999999999999
Q ss_pred CCCCcCCCCC--CCccEEEE
Q 004022 411 NMLQSLPELP--LCLKYLHL 428 (779)
Q Consensus 411 ~~~~~~~~~~--~~L~~L~l 428 (779)
.+...-|..| ..|++|.+
T Consensus 427 aiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 427 AIASIQPNAFEPMELKELVM 446 (873)
T ss_pred cceeecccccccchhhhhhh
Confidence 9988777755 34666654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-29 Score=262.79 Aligned_cols=358 Identities=17% Similarity=0.106 Sum_probs=213.3
Q ss_pred EEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCC
Q 004022 25 EGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR 104 (779)
Q Consensus 25 ~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~ 104 (779)
..-.||++++....++...|.++++|+.+++.+|.++.|+.. .... .+|+.|+|.+|.|+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-------------------~~~s-ghl~~L~L~~N~I~ 138 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-------------------GHES-GHLEKLDLRHNLIS 138 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-------------------cccc-cceeEEeeeccccc
Confidence 334599999998899999999999999999999999644432 2222 24555555555554
Q ss_pred CCCCCC--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC-CCCCCCCCCCcEEEecCCcCcc
Q 004022 105 TLPSNF--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS-FPSNLHFVCPVTINFSYCVNLI 181 (779)
Q Consensus 105 ~lp~~~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~-~p~~~~l~~L~~L~L~~~~~l~ 181 (779)
++.+.- .++.|+.|||+.|.|+.+. -.+|..-.++++|+|++|.+.+. ...|.++.+|..|.|+.|...+
T Consensus 139 sv~se~L~~l~alrslDLSrN~is~i~-------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 139 SVTSEELSALPALRSLDLSRNLISEIP-------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred cccHHHHHhHhhhhhhhhhhchhhccc-------CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 444332 3444555555555554431 11222334455555555543331 1123344455555555544332
Q ss_pred ccC---CcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhc
Q 004022 182 EFP---QISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEK 257 (779)
Q Consensus 182 ~~~---~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~ 257 (779)
--+ +.+++|+.|+|..|.|..+ -..|..|++|+.|.+..|.+.+.-...|..+.++++|+|+.|+....-...+-+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 111 1223444555555555444 224455555555555555544444444555555555555555554444444555
Q ss_pred CccCcEeecCCcCCCcC-CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCc-cccCccccCeee
Q 004022 258 MEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPS-SVALSNMLRSLD 335 (779)
Q Consensus 258 l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~-~l~~l~~L~~L~ 335 (779)
++.|+.|++++|.|..+ ++++...++|+.|+|+.|.+...-+.+|..+..|+.+..+.+.+..+.+ .|..+++|++|+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 55555555555555544 2334555555555555555555555555555555554444444444433 467788999999
Q ss_pred ccCCCCCCccC--hhhccCCCCCcEEEecCCCCccCCc-ccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCCC
Q 004022 336 SSHCKGLESFP--RTFLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 336 l~~n~~~~~~~--~~~~~~l~~L~~L~Ls~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n 410 (779)
+++|.+...+. ...+.++++|+.|.+.+|++..+|. ++..+++|+.|+|.+|.+.++. ..|..+ .|++|.+..-
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 99998876543 3347789999999999999999875 5889999999999999988654 678888 8888877653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-30 Score=261.20 Aligned_cols=419 Identities=21% Similarity=0.264 Sum_probs=309.7
Q ss_pred ccccEEEEEeecccccccccChhhhhcccCCceEeeccCcccccc----cCCCCccccccccceeecCCCCCCCCCCceE
Q 004022 20 GTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE----KLPSMSTEEQLSYSKVQLPNGLDYLPKKLRY 95 (779)
Q Consensus 20 g~~~i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~----~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~ 95 (779)
.++.+.--.++++.+....+. ..+.++..|.+|++.+|+++.++ .+.++..+..+......+|+.+..++ +|+.
T Consensus 41 wW~qv~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~-~l~~ 118 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLI-SLVK 118 (565)
T ss_pred hhhhcchhhhhhccCchhhcc-HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhh-hhhh
Confidence 345566666777777654444 46778888888888888877433 34556666666666678898888885 9999
Q ss_pred EEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEe
Q 004022 96 LHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINF 174 (779)
Q Consensus 96 L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L 174 (779)
|+.+.|.++.+|+.+ .+..|+.|+..+|+|+. +|+.+.++.+|..|++.+|+.....|+...++.|++|+.
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~s--------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQISS--------LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhcccccccc--------CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence 999999999998887 88899999999999988 688888999999999999986666666777999999998
Q ss_pred cCCcCccccCCcCCC---ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCccccccc-CCCCCCcEEecccccCCcc
Q 004022 175 SYCVNLIEFPQISGK---VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSF-CKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 175 ~~~~~l~~~~~~~~~---L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~L~~~~~~~~ 250 (779)
..| .++.+|+.++. |..|++..|.|..+| .|+.+..|++|.+..|. ++.+|... ..+.+|.+|++.+|+ +++
T Consensus 191 ~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke 266 (565)
T KOG0472|consen 191 NSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKE 266 (565)
T ss_pred chh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-ccc
Confidence 877 46778877765 455678889999999 78888999999998876 55666554 489999999999865 566
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCC----------------------------------
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLD---------------------------------- 296 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~---------------------------------- 296 (779)
.|+.+..+.+|.+||+++|.|+.+|.+++++ +|+.|.+.+|++-+
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 8888999999999999999999999999999 99999998887522
Q ss_pred ---CCCC-CCCC---chhHHHHHhhc--------------------------ccCCcCCccccCccccCe-eeccCCCCC
Q 004022 297 ---NLPD-NIGS---LEYLYYILAAA--------------------------SAISQLPSSVALSNMLRS-LDSSHCKGL 342 (779)
Q Consensus 297 ---~lp~-~l~~---l~~L~~~~~~~--------------------------~~~~~lp~~l~~l~~L~~-L~l~~n~~~ 342 (779)
..|. .+.. +.+.+.+.... +.+..+|..+..+..+.+ +.+++|. .
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~-i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK-I 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc-c
Confidence 0011 1111 11122211111 122233444444444444 3444444 4
Q ss_pred CccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC---C
Q 004022 343 ESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE---L 419 (779)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~---~ 419 (779)
+.++.. +..+++|..|++++|.+.++|..++.+..|+.|+++.|.|..+|.++-.+..|+.+-.++|++...-+. .
T Consensus 425 sfv~~~-l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 425 SFVPLE-LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred ccchHH-HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 434433 678999999999999999999999999999999999999999998887777777766666665544444 3
Q ss_pred CCCccEEEEecCCCCCCCCCCC--CCccEEEeeCCCCC
Q 004022 420 PLCLKYLHLIDCKMLQSLPVLP--FCLESLDLTGCNML 455 (779)
Q Consensus 420 ~~~L~~L~l~~c~~l~~lp~l~--~~L~~L~ls~n~~l 455 (779)
..+|+.|++.+|...+.-|.+. .+|++|+++||++.
T Consensus 504 m~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 4778889998886443333332 38999999999986
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-30 Score=269.09 Aligned_cols=358 Identities=20% Similarity=0.247 Sum_probs=180.9
Q ss_pred ccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCC
Q 004022 47 MSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKV 125 (779)
Q Consensus 47 l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i 125 (779)
++-.|-.|+++|.+ ++..+|.++..+ .++++|.|....+..+|... .+.+|++|.+++|++
T Consensus 6 LpFVrGvDfsgNDF-----------------sg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L 67 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDF-----------------SGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL 67 (1255)
T ss_pred cceeecccccCCcC-----------------CCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh
Confidence 34466677777777 345666666666 47777777777777777666 667777777777776
Q ss_pred CCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCC-CCCCCCCCcEEEecCCcCccccCCcC---CCccEEEecCcCC
Q 004022 126 EQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFP-SNLHFVCPVTINFSYCVNLIEFPQIS---GKVTRLYLGQSAI 200 (779)
Q Consensus 126 ~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p-~~~~l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~L~~n~i 200 (779)
.. +...+..++.|+.+++..|++-. .+| +++.+..|..|+|++|+ +++.|..+ .++-+|+|++|+|
T Consensus 68 ~~--------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 68 IS--------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred Hh--------hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCcc
Confidence 65 34445556666666666555322 223 35556666666666654 34444443 2445556666666
Q ss_pred cccCccc-CCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC--cCCcc
Q 004022 201 EEVPSSI-ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT--ELPSS 277 (779)
Q Consensus 201 ~~lp~~l-~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~--~lp~~ 277 (779)
..||..+ -+|+.|-.|+|++|+ +..+|+.+..+..|++|.|++|.+...-...+..|++|+.|.+++++-+ .+|.+
T Consensus 139 etIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 6655533 355555555665544 4444555555555555555555443222222233444444444444433 34444
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCc
Q 004022 278 FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMG 357 (779)
Q Consensus 278 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 357 (779)
+..+.+|..++++.|+ +..+|..+.++.+|+.+..+.+.+..+....+...+|++|+++.|+++..+.. ...++.|+
T Consensus 218 ld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a--vcKL~kL~ 294 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA--VCKLTKLT 294 (1255)
T ss_pred hhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH--HhhhHHHH
Confidence 4444444444444432 23334444444444442222233333333334444455555555544433222 22444455
Q ss_pred EEEecCCCCcc--CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC--CCCCccEEEEecCCC
Q 004022 358 LLHISDYAVRE--IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE--LPLCLKYLHLIDCKM 433 (779)
Q Consensus 358 ~L~Ls~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~--~~~~L~~L~l~~c~~ 433 (779)
.|.+.+|.++- +|+.++.+..|+.+..++|.+.-+|+.+..+..|+.|.|+.|.+.+.... +++.|+.|++..|++
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcC
Confidence 55555444332 55555555555555555555555555555555555555554444332111 234444555555554
Q ss_pred CC
Q 004022 434 LQ 435 (779)
Q Consensus 434 l~ 435 (779)
+.
T Consensus 375 LV 376 (1255)
T KOG0444|consen 375 LV 376 (1255)
T ss_pred cc
Confidence 43
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-29 Score=262.51 Aligned_cols=348 Identities=21% Similarity=0.287 Sum_probs=265.0
Q ss_pred hhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEE
Q 004022 41 PRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELN 119 (779)
Q Consensus 41 ~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~ 119 (779)
|.....|++++.|.|...++ ..+|+.+..+ .+|++|.+++|++.++-... .++.|+.++
T Consensus 25 P~~v~qMt~~~WLkLnrt~L-------------------~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKL-------------------EQVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred chhHHHhhheeEEEechhhh-------------------hhChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 45678899999999988776 4677777777 58888888888877776665 777888888
Q ss_pred CCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCCcC----CCccEEE
Q 004022 120 LRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQIS----GKVTRLY 194 (779)
Q Consensus 120 L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~----~~L~~L~ 194 (779)
+++|++..- | +|..+..+..|.+||||+|+ +++.|. +...+++-.|+|++|++ ..+|..+ ..|-.|+
T Consensus 85 ~R~N~LKns--G----iP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 85 VRDNNLKNS--G----IPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhccccccC--C----CCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhc
Confidence 888877652 2 67777788888888888887 555665 45577788888887764 3455432 3455678
Q ss_pred ecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccC-CcccchhhhcCccCcEeecCCcCCCc
Q 004022 195 LGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLN-LEHFPEILEKMEHLKRIYSDRTPITE 273 (779)
Q Consensus 195 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~-~~~~p~~l~~l~~L~~L~L~~n~i~~ 273 (779)
|++|.+..+|+.+..|.+|++|.|++|.+...--..+-.+++|++|.+++.+. +..+|..+..+.+|..++++.|.+..
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI 236 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc
Confidence 88888888888888888888888888875432112233377788888877543 34678888888888888888888888
Q ss_pred CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCc-cChhhccC
Q 004022 274 LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES-FPRTFLLG 352 (779)
Q Consensus 274 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~ 352 (779)
+|..+.++++|+.|+|++|.+. .+....+...+|+.+..+.+.+..+|..+..+++|+.|.+.+|++.-. +|+. ++.
T Consensus 237 vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGK 314 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGK 314 (1255)
T ss_pred chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc-hhh
Confidence 8888888888888888887654 344445566677776666677888888888888888888888876544 3333 567
Q ss_pred CCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC
Q 004022 353 LSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE 418 (779)
Q Consensus 353 l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~ 418 (779)
+..|+.+..++|.+.-+|+.++.+..|+.|.|+.|.+.++|+.+.-++.|+.|++..|+.+...|.
T Consensus 315 L~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 888888888888888899999999999999999999999999999999999999999988766554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-28 Score=265.77 Aligned_cols=425 Identities=21% Similarity=0.173 Sum_probs=305.7
Q ss_pred EEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCC
Q 004022 26 GIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRT 105 (779)
Q Consensus 26 ~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~ 105 (779)
.+.|+++.+-.+..+-++..+.-+|+.|++++|.++ .+|..+..++ +|+.|+++.|.+++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-------------------~fp~~it~l~-~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-------------------SFPIQITLLS-HLRQLNLSRNYIRS 82 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-------------------cCCchhhhHH-HHhhcccchhhHhh
Confidence 445666666555555667777777999999999884 6677777774 88888888888888
Q ss_pred CCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEE------------
Q 004022 106 LPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTI------------ 172 (779)
Q Consensus 106 lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L------------ 172 (779)
+|... ++.+|++|.|.+|.+.. +|.++..+++|++|++++|.+....+.+..+..++.+
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l~~--------lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRLQS--------LPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred Cchhhhhhhcchhheeccchhhc--------CchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 88666 78888888888888876 6888888888888888888754332223334444444
Q ss_pred -------EecCCcCccccCCcCCCccE-EEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEeccc
Q 004022 173 -------NFSYCVNLIEFPQISGKVTR-LYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLG 244 (779)
Q Consensus 173 -------~L~~~~~l~~~~~~~~~L~~-L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~ 244 (779)
++..+.....++.....++. |+|.+|.+. ...+.++.+|+.|....|++.... -..++|+.|+.+.
T Consensus 155 ~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 155 QTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADH 228 (1081)
T ss_pred cccchhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhccchhhhhhhhcccceEE----ecCcchheeeecc
Confidence 44444444555555556666 777777776 334555667777777766543321 1256788888888
Q ss_pred ccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCcc
Q 004022 245 CLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSS 324 (779)
Q Consensus 245 ~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~ 324 (779)
|.+....+.. --.+|++++++.|.++.+|+|++.+.+|+.+.+..|.+ ..+|..+....+|+.+....+.++.+|..
T Consensus 229 n~l~~~~~~p--~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~ 305 (1081)
T KOG0618|consen 229 NPLTTLDVHP--VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPF 305 (1081)
T ss_pred Ccceeecccc--ccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCc
Confidence 8777443321 23579999999999999999999999999999999877 77888899999999988888899999999
Q ss_pred ccCccccCeeeccCCCCCCccChhh------------------------ccCCCCCcEEEecCCCCcc-CCcccCCCCCc
Q 004022 325 VALSNMLRSLDSSHCKGLESFPRTF------------------------LLGLSAMGLLHISDYAVRE-IPQEIAYLSSL 379 (779)
Q Consensus 325 l~~l~~L~~L~l~~n~~~~~~~~~~------------------------~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L 379 (779)
...+++|++|++..|.+...++... -..++.|+.|++.+|.+++ .-..+.++..|
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 9999999999999998766533211 1234567778888888887 44457788899
Q ss_pred cEEEEecCCCccCC-hhccCCCCCCEEEcCCCCCCCcCCC---CCCCccEEEEecCCCCCCCCCCC--CCccEEEeeCCC
Q 004022 380 EILYLSGNNFESLP-AIIKQMSQLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLPVLP--FCLESLDLTGCN 453 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~---~~~~L~~L~l~~c~~l~~lp~l~--~~L~~L~ls~n~ 453 (779)
+.|+|++|++.++| ..+.+++.|++|+||+|++.+. |. ....|++|...+|. +..+|++. +.|+.+|+|.|+
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccch
Confidence 99999999999888 4578899999999999877543 33 23567777666653 45566432 289999999998
Q ss_pred CCCC-CCC-CC-CCccEEeeecCcCCcccCCCCCCccEE
Q 004022 454 MLRS-LPE-LP-LCLQYLNLEDCNMLRSLPELPLCLQLL 489 (779)
Q Consensus 454 ~l~~-l~~-~~-~~L~~L~l~~c~~L~~l~~~~~sL~~L 489 (779)
+... +|. .+ ++|++||++++..+..-..-++.++.+
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSL 502 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhh
Confidence 7653 333 33 789999999988754443333333333
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-29 Score=250.37 Aligned_cols=396 Identities=21% Similarity=0.203 Sum_probs=239.9
Q ss_pred cccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCC
Q 004022 46 NMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSK 124 (779)
Q Consensus 46 ~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~ 124 (779)
.-..|+.|++++|.++ .+.+++..++ .|.+|++++|.+..+|+.+ .+..++.|+.++|+
T Consensus 43 ~qv~l~~lils~N~l~-------------------~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ 102 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE-------------------VLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK 102 (565)
T ss_pred hhcchhhhhhccCchh-------------------hccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccch
Confidence 3456888999999885 3344444442 5555555555555555554 55555555555555
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEE-----------------------EecCCcCcc
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTI-----------------------NFSYCVNLI 181 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L-----------------------~L~~~~~l~ 181 (779)
+.+ +|..++.+.+|+.|+.++|.+..-.+++..+..|+.+ ++.+|....
T Consensus 103 ls~--------lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~ 174 (565)
T KOG0472|consen 103 LSE--------LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA 174 (565)
T ss_pred Hhh--------ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhh
Confidence 554 4555555555555555555433333334444444444 444443322
Q ss_pred ccCCc--CCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchh-hhcC
Q 004022 182 EFPQI--SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI-LEKM 258 (779)
Q Consensus 182 ~~~~~--~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-l~~l 258 (779)
..|.. +..|++|+...|.++.+|+.++.+.+|..|++..|+ +..+| .|.++..|++|+++.|.+. .+|.. ..++
T Consensus 175 l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L 251 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHL 251 (565)
T ss_pred CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHH-hhHHHHhccc
Confidence 22211 234666666667777777777777777777777766 34455 3666777777777665443 34444 4478
Q ss_pred ccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhccc--------------------
Q 004022 259 EHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASA-------------------- 317 (779)
Q Consensus 259 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~-------------------- 317 (779)
.+|..||+..|+++++|..+..+++|+.||+++|.+ ..+|.+++++ .|+. .+.++..
T Consensus 252 ~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR 329 (565)
T ss_pred ccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH
Confidence 888888888888888888888888888888888654 4567777766 4444 2222210
Q ss_pred -------CC----------cCCc----cccCccccCeeeccCCCCCCccChhhcc-CCCCCcEEEecCCCCcc-------
Q 004022 318 -------IS----------QLPS----SVALSNMLRSLDSSHCKGLESFPRTFLL-GLSAMGLLHISDYAVRE------- 368 (779)
Q Consensus 318 -------~~----------~lp~----~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~~------- 368 (779)
+. ..+. ......+.+.|++++-+++..+...+-. .-.-....+++.|.+.+
T Consensus 330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 00 0000 0112334666666666555443332211 11123444555554443
Q ss_pred -----------------CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEE
Q 004022 369 -----------------IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHL 428 (779)
Q Consensus 369 -----------------~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l 428 (779)
+|..+..+++|..|+|++|-+..+|..++.+..|+.|+++.|.+ ..+|.. +..++.+-.
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtlla 488 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLA 488 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHh
Confidence 44456678999999999999999999999999999999999944 233432 233444444
Q ss_pred ecCCCCCCCCCC----CCCccEEEeeCCCCCCCCCC--CCCCccEEeeecCcCC
Q 004022 429 IDCKMLQSLPVL----PFCLESLDLTGCNMLRSLPE--LPLCLQYLNLEDCNML 476 (779)
Q Consensus 429 ~~c~~l~~lp~l----~~~L~~L~ls~n~~l~~l~~--~~~~L~~L~l~~c~~L 476 (779)
+++ .+.+++.- ..+|.+||+.+|.+....|. ..++|++|++++++.-
T Consensus 489 s~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 489 SNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccc-cccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 444 44555431 23799999999998877665 4589999999998754
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=260.52 Aligned_cols=300 Identities=25% Similarity=0.364 Sum_probs=222.1
Q ss_pred CCcEEEecCCcCccccCCcC--CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccc
Q 004022 168 CPVTINFSYCVNLIEFPQIS--GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC 245 (779)
Q Consensus 168 ~L~~L~L~~~~~l~~~~~~~--~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 245 (779)
+|+.|.+.++. .+.+|..+ .+|+.|++.++.+..++..+..+++|+.|++++|..++.+|. ++.+++|++|+|++|
T Consensus 590 ~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCC-CCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 45555555543 23344332 456666666666788888888899999999999888888885 788999999999999
Q ss_pred cCCcccchhhhcCccCcEeecCCc-CCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCcc
Q 004022 246 LNLEHFPEILEKMEHLKRIYSDRT-PITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSS 324 (779)
Q Consensus 246 ~~~~~~p~~l~~l~~L~~L~L~~n-~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~ 324 (779)
..+..+|..++.+++|+.|++++| .++.+|..+ ++++|+.|++++|..++.+|..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----------------------- 723 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----------------------- 723 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc-----------------------
Confidence 988999999999999999999985 677888765 7899999999998766555431
Q ss_pred ccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC--------cccCCCCCccEEEEecCC-CccCChh
Q 004022 325 VALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP--------QEIAYLSSLEILYLSGNN-FESLPAI 395 (779)
Q Consensus 325 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p--------~~l~~l~~L~~L~Ls~n~-l~~lp~~ 395 (779)
.++|+.|++++|.+... |.. ..+++|+.|.+.++....++ ......++|+.|+|++|. +..+|..
T Consensus 724 ---~~nL~~L~L~~n~i~~l-P~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 724 ---STNISWLDLDETAIEEF-PSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred ---cCCcCeeecCCCccccc-ccc--ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 24566777777765443 222 14667777777665432221 112335789999999985 5588988
Q ss_pred ccCCCCCCEEEcCCCCCCCcCCCC--CCCccEEEEecCCCCCCCCCCCCCccEEEeeCCCCCCCCCC---CCCCccEEee
Q 004022 396 IKQMSQLRFIHLEDFNMLQSLPEL--PLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNL 470 (779)
Q Consensus 396 l~~l~~L~~L~Ls~n~~~~~~~~~--~~~L~~L~l~~c~~l~~lp~l~~~L~~L~ls~n~~l~~l~~---~~~~L~~L~l 470 (779)
++++++|+.|++++|..++.+|.. +++|++|++++|..++.+|..+.+|++|++++|.+.. +|. .+++|+.|++
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDM 876 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCcc-ChHHHhcCCCCCEEEC
Confidence 999999999999999888888763 5788999999999988888888888888888887653 443 3477888888
Q ss_pred ecCcCCcccCCC---CCCccEEEEecCCCCCCc
Q 004022 471 EDCNMLRSLPEL---PLCLQLLTVRNCNRLQSL 500 (779)
Q Consensus 471 ~~c~~L~~l~~~---~~sL~~L~i~~C~~L~~l 500 (779)
.+|+.++.+|.. +++|+.|++++|.+|+.+
T Consensus 877 ~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 877 NGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 888888887753 356777778888766543
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-25 Score=243.29 Aligned_cols=372 Identities=21% Similarity=0.243 Sum_probs=184.5
Q ss_pred cEEEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCC
Q 004022 23 AIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYP 102 (779)
Q Consensus 23 ~i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~ 102 (779)
.|.--.||++.+....++ ..+..+.+|+.|+++.|.|. .+|...... ++|++|.|.+|.
T Consensus 44 ~v~L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i~-------------------~vp~s~~~~-~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYIR-------------------SVPSSCSNM-RNLQYLNLKNNR 102 (1081)
T ss_pred eeeeEEeeccccccccCC-chhhhHHHHhhcccchhhHh-------------------hCchhhhhh-hcchhheeccch
Confidence 566677999998765555 47888899999999999884 444445555 467777777777
Q ss_pred CCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCc----------------------------------
Q 004022 103 LRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLS---------------------------------- 147 (779)
Q Consensus 103 l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~---------------------------------- 147 (779)
+..+|..+ .+++|+.|++++|++.. +|..+..+..+.
T Consensus 103 l~~lP~~~~~lknl~~LdlS~N~f~~--------~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 103 LQSLPASISELKNLQYLDLSFNHFGP--------IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred hhcCchhHHhhhcccccccchhccCC--------CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence 77777666 66777777777776655 222222222222
Q ss_pred -------EEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeC
Q 004022 148 -------ALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRG 220 (779)
Q Consensus 148 -------~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~ 220 (779)
.|||++|... .-+...+.+|+.|....|.. ..+-..-.+++.|+.+.|.+..+-.. ..-.+|++++++.
T Consensus 175 ~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~l-s~l~~~g~~l~~L~a~~n~l~~~~~~-p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 175 DIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQL-SELEISGPSLTALYADHNPLTTLDVH-PVPLNLQYLDISH 250 (1081)
T ss_pred chhhhheeeecccchhh--hhhhhhccchhhhhhhhccc-ceEEecCcchheeeeccCcceeeccc-cccccceeeecch
Confidence 2444444432 11111122222222111111 00011111233333333333321111 1123455555555
Q ss_pred CCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCC
Q 004022 221 CKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPD 300 (779)
Q Consensus 221 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~ 300 (779)
+++ ..+|++++.+.+|+.+....|.+ ..+|..+..+.+|+.|.+..|.+..+|...+.+++|++|+|..|++. .+|+
T Consensus 251 n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 251 NNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred hhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccch
Confidence 442 23344455555555555555444 33444444455555555555555555554555555555555554332 2222
Q ss_pred CC--------------------------CCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCC
Q 004022 301 NI--------------------------GSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGL 353 (779)
Q Consensus 301 ~l--------------------------~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 353 (779)
.+ .....|+. .+.++......-+.+.++++|+.|++++|++.. +|...+..+
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kl 406 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKL 406 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhch
Confidence 11 12344444 222333333333444555555555555555433 333334555
Q ss_pred CCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCc-CCC-CC-CCccEEEEec
Q 004022 354 SAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQS-LPE-LP-LCLKYLHLID 430 (779)
Q Consensus 354 ~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~-~~~-~~-~~L~~L~l~~ 430 (779)
..|++|+||+|.++.+|..+..++.|++|...+|++..+| .+.++++|+.+|++.|++... +|. .+ ++|++|++++
T Consensus 407 e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 407 EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccC
Confidence 5555555555555555555555555555555555555555 455555666666555555432 222 22 4555555555
Q ss_pred CC
Q 004022 431 CK 432 (779)
Q Consensus 431 c~ 432 (779)
|.
T Consensus 486 N~ 487 (1081)
T KOG0618|consen 486 NT 487 (1081)
T ss_pred Cc
Confidence 54
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=206.01 Aligned_cols=263 Identities=18% Similarity=0.193 Sum_probs=200.8
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
+.-..|+++++.++.+|..+. .+|+.|++.+|+++. +|. .+++|++|+|++|+ ++.+|.. .++|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~--------LP~---lp~~Lk~LdLs~N~-LtsLP~l--p~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQ-LTSLPVL--PPGLL 265 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCC--------CCC---CCCCCcEEEecCCc-cCcccCc--ccccc
Confidence 456789999999999998774 489999999999997 453 35789999999997 4566753 46899
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|++++|. +..+|..+.+|+.|++++|.+..+|.. .++|+.|++++|++.+ +|.. ..+|+.|.+++|.+..
T Consensus 266 ~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 266 ELSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred eeeccCCc-hhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 99999886 456777777888999999998888863 4678889998887554 4542 3457778888776543
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+|.. ..+|+.|++++|+++.+|.. ..+|+.|++++|.+. .+|.. ..+
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~------------------------~LP~l---~~~ 383 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT------------------------SLPAL---PSG 383 (788)
T ss_pred cccc---ccccceEecCCCccCCCCCC---Ccccceehhhccccc------------------------cCccc---ccc
Confidence 4431 24688888888888887763 346667777766543 22321 246
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCC
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 410 (779)
|+.|++++|.+... |. ..++|+.|++++|.++.+|.. ..+|+.|++++|+++.+|..+..+++|+.|+|++|
T Consensus 384 L~~LdLs~N~Lt~L-P~----l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 384 LKELIVSGNRLTSL-PV----LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cceEEecCCcccCC-CC----cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 89999999988763 32 246899999999999998864 35788999999999999999999999999999999
Q ss_pred CCCCcCCC
Q 004022 411 NMLQSLPE 418 (779)
Q Consensus 411 ~~~~~~~~ 418 (779)
++.+..+.
T Consensus 456 ~Ls~~~~~ 463 (788)
T PRK15387 456 PLSERTLQ 463 (788)
T ss_pred CCCchHHH
Confidence 99876554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=202.33 Aligned_cols=243 Identities=19% Similarity=0.187 Sum_probs=157.1
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.+|+.|++.+|.++.+|.. +++|++|+|++|+|+. +|. ..++|+.|++++|. +..+|.. ..+|+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lts--------LP~---lp~sL~~L~Ls~N~-L~~Lp~l--p~~L~ 285 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTS--------LPV---LPPGLLELSIFSNP-LTHLPAL--PSGLC 285 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCc--------ccC---cccccceeeccCCc-hhhhhhc--hhhcC
Confidence 3566666666666666642 4566666666666665 232 13456666666665 3344431 24566
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|++++|.. ..+|..+.+|+.|++++|.+..+|... .+|+.|++++|.+. .+|. + ..+|+.|+|++|.+..
T Consensus 286 ~L~Ls~N~L-t~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~-l--p~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 286 KLWIFGNQL-TSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPT-L--PSGLQELSVSDNQLAS- 356 (788)
T ss_pred EEECcCCcc-ccccccccccceeECCCCccccCCCCc---ccccccccccCccc-cccc-c--ccccceEecCCCccCC-
Confidence 666666643 355555566777777777777666532 34666777776643 3443 1 2467777777766553
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|.+.. +|. . .++
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~-----------------------l---~s~ 403 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPV-----------------------L---PSE 403 (788)
T ss_pred CCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC-CCC-----------------------c---ccC
Confidence 4432 24677788888888877753 3567888888776442 332 1 246
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc-cCChhc
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE-SLPAII 396 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l 396 (779)
|+.|++++|.+... |. .+.+|+.|++++|.++.+|..+..+++|+.|+|++|.++ ..+..+
T Consensus 404 L~~LdLS~N~LssI-P~----l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTSL-PM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCCC-Cc----chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 88888888887653 32 235788999999999999999999999999999999998 334444
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-19 Score=180.41 Aligned_cols=243 Identities=19% Similarity=0.163 Sum_probs=161.5
Q ss_pred EEEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccC-CC
Q 004022 24 IEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDT-YP 102 (779)
Q Consensus 24 i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~-n~ 102 (779)
...|.|| .|.+..+++.+|+.+++||.|||++|.|+.|. |+.+..+. +|-.|-+.+ |+
T Consensus 69 tveirLd--qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~------------------p~AF~GL~-~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 69 TVEIRLD--QNQISSIPPGAFKTLHRLRRLDLSKNNISFIA------------------PDAFKGLA-SLLSLVLYGNNK 127 (498)
T ss_pred ceEEEec--cCCcccCChhhccchhhhceecccccchhhcC------------------hHhhhhhH-hhhHHHhhcCCc
Confidence 3445555 45556799999999999999999999997432 44455553 444444433 66
Q ss_pred CCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCc
Q 004022 103 LRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCV 178 (779)
Q Consensus 103 l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~ 178 (779)
|+++|.. | ++..|+.|.+.-|++.-+ ..+.|..+++|..|.+.+|.+ ..++. +.++..++.+.+..|.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Ci-------r~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCI-------RQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcch-------hHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCc
Confidence 7777755 3 666677777766666654 445566666666666666653 33332 4456666666665554
Q ss_pred Cc------------cccCCcCC-------------------------CccEE----EecCcCCcccCc-ccCCCCCccEE
Q 004022 179 NL------------IEFPQISG-------------------------KVTRL----YLGQSAIEEVPS-SIECLTDLEVL 216 (779)
Q Consensus 179 ~l------------~~~~~~~~-------------------------~L~~L----~L~~n~i~~lp~-~l~~l~~L~~L 216 (779)
.. ...|..++ .++.+ ....+.....|. .|..|++|+.|
T Consensus 200 ~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 200 FICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred cccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 21 01111111 11111 111122222332 46788999999
Q ss_pred eeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCCCCCCCEEeccCCCCC
Q 004022 217 DLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 217 ~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~ 295 (779)
++++|++.+.-+.+|.++..+++|.|..|++...-...|.++..|+.|+|.+|+|+.+ |..|..+.+|.+|++-.|++.
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999998888888899999999999999887766677788999999999999999966 555888999999988877653
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-17 Score=188.43 Aligned_cols=247 Identities=23% Similarity=0.300 Sum_probs=152.0
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.+...|+++++.++.+|..+ +++|+.|+|++|+|+. +|..+. ++|++|++++|. ++.+|... ..+|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lts--------LP~~l~--~nL~~L~Ls~N~-LtsLP~~l-~~~L~ 244 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKS--------LPENLQ--GNIKTLYANSNQ-LTSIPATL-PDTIQ 244 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCc--------CChhhc--cCCCEEECCCCc-cccCChhh-hcccc
Confidence 56788999999999998765 3579999999999987 454443 588899998887 44555421 23566
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|++++|.. ..+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.+. .
T Consensus 245 ~L~Ls~N~L---------------------~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~ 297 (754)
T PRK15370 245 EMELSINRI---------------------TELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-T 297 (754)
T ss_pred EEECcCCcc---------------------CcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-c
Confidence 666666653 44444332 34555555554433 3444332 35555555555433 2
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+|..+. ++|+.|++++|.++.+|..+ .++|+.|++++|.+.+ +|. .+ .++
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~-----------------------~l--~~s 347 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPA-----------------------SL--PPE 347 (754)
T ss_pred Ccccch--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CCh-----------------------hh--cCc
Confidence 333221 35666677777776666543 2567777776665432 221 11 145
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhc----cCCCCCCEEE
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAII----KQMSQLRFIH 406 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~ 406 (779)
|+.|++++|.+.. +|.. -.++|+.|++++|.++.+|..+. .+|+.|++++|+++.+|..+ ..++++..|+
T Consensus 348 L~~L~Ls~N~L~~-LP~~---lp~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 348 LQVLDVSKNQITV-LPET---LPPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred ccEEECCCCCCCc-CChh---hcCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEE
Confidence 7777777776653 2322 13577888888888877776543 36888888888888777543 3457777777
Q ss_pred cCCCCCC
Q 004022 407 LEDFNML 413 (779)
Q Consensus 407 Ls~n~~~ 413 (779)
+.+|++.
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 7777764
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-17 Score=186.14 Aligned_cols=206 Identities=17% Similarity=0.279 Sum_probs=161.0
Q ss_pred cCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCC
Q 004022 48 SNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQ 127 (779)
Q Consensus 48 ~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~ 127 (779)
.+...|+++++.++ .+|..+ |.+|+.|++++|.++.+|..+. .+|++|++++|+++.
T Consensus 178 ~~~~~L~L~~~~Lt-------------------sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~Lts 234 (754)
T PRK15370 178 NNKTELRLKILGLT-------------------TIPACI---PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTS 234 (754)
T ss_pred cCceEEEeCCCCcC-------------------cCCccc---ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCcccc
Confidence 45788888888774 456543 4689999999999999998764 589999999999987
Q ss_pred ccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcC-CCccEEEecCcCCcccCcc
Q 004022 128 PWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS-GKVTRLYLGQSAIEEVPSS 206 (779)
Q Consensus 128 l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~-~~L~~L~L~~n~i~~lp~~ 206 (779)
+|..+. .+|+.|+|++|.+ ..+|... ..+|+.|++++|... .+|..+ .+|+.|++++|.+..+|..
T Consensus 235 --------LP~~l~--~~L~~L~Ls~N~L-~~LP~~l-~s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 235 --------IPATLP--DTIQEMELSINRI-TELPERL-PSALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred --------CChhhh--ccccEEECcCCcc-CcCChhH-hCCCCEEECcCCccC-ccccccCCCCcEEECCCCccccCccc
Confidence 555443 5799999999985 4676533 358999999988654 667644 4899999999999999876
Q ss_pred cCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCE
Q 004022 207 IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEV 286 (779)
Q Consensus 207 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~ 286 (779)
+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.+.. +|..+. ++|+.|++++|.++.+|..+ .++|+.
T Consensus 302 lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~ 371 (754)
T PRK15370 302 LP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL--PPTITT 371 (754)
T ss_pred ch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh--cCCcCE
Confidence 54 57999999998865 456544 3689999999987654 666553 68999999999999998765 368999
Q ss_pred EeccCCCCCCCCCC
Q 004022 287 LFVEDCSKLDNLPD 300 (779)
Q Consensus 287 L~L~~~~~~~~lp~ 300 (779)
|++++|++. .+|.
T Consensus 372 LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 372 LDVSRNALT-NLPE 384 (754)
T ss_pred EECCCCcCC-CCCH
Confidence 999998765 4554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-18 Score=171.03 Aligned_cols=361 Identities=19% Similarity=0.197 Sum_probs=212.3
Q ss_pred eeecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC
Q 004022 79 KVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS 156 (779)
Q Consensus 79 ~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~ 156 (779)
-..+|. .+|..-..++|+.|.|+.||.. | .+++|+.|||++|+|+.+ -|++|..++.|..|-+.++..
T Consensus 58 L~eVP~---~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-------~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 58 LTEVPA---NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-------APDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred cccCcc---cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-------ChHhhhhhHhhhHHHhhcCCc
Confidence 344554 4567889999999999999976 5 899999999999999998 788999999999988888555
Q ss_pred CCCCCC--CCCCCCCcEEEecCCcCccc---cCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCc-----
Q 004022 157 LRSFPS--NLHFVCPVTINFSYCVNLIE---FPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLK----- 225 (779)
Q Consensus 157 l~~~p~--~~~l~~L~~L~L~~~~~l~~---~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~----- 225 (779)
++.+|. |.++..|+.|.+.-|...-. ....+.++..|.+..|.+..++. ++..+..++.+.+..|.+..
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 788886 67789999988887765432 22345567777888888888887 77788888888887766321
Q ss_pred -------ccccccCCCCCCcEEecccccCCcccchhhhc-CccCc-EeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 226 -------RISTSFCKLRSLVTLILLGCLNLEHFPEILEK-MEHLK-RIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 226 -------~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~-l~~L~-~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
..|..+++..-..-..+.+..+-..-+..+.. +..+. .+....+.....|.. |..+++|++|++++|++.
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 22222333322222222222221111111111 11111 111112223333433 677777888888777766
Q ss_pred CCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccC
Q 004022 296 DNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIA 374 (779)
Q Consensus 296 ~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~ 374 (779)
+.-+.+|..+.++ ++|.+..|++.. +....|.++..|+.|+|.+|+++. .|..|.
T Consensus 288 ~i~~~aFe~~a~l-----------------------~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 288 RIEDGAFEGAAEL-----------------------QELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred hhhhhhhcchhhh-----------------------hhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 6555555444444 444444444322 222225566666666666666666 455566
Q ss_pred CCCCccEEEEecCCCc------cCChhcc-----------CCCCCCEEEcCCCCCCC---------------cCCCCCCC
Q 004022 375 YLSSLEILYLSGNNFE------SLPAIIK-----------QMSQLRFIHLEDFNMLQ---------------SLPELPLC 422 (779)
Q Consensus 375 ~l~~L~~L~Ls~n~l~------~lp~~l~-----------~l~~L~~L~Ls~n~~~~---------------~~~~~~~~ 422 (779)
.+.+|.+|+|-.|.+- .+-+|+. .-..++.+.+++..+.. .-|..-+.
T Consensus 344 ~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c 423 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTC 423 (498)
T ss_pred ccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcch
Confidence 6666666666655332 1112221 12234455554433221 11112234
Q ss_pred ccEEEEecCCCCCCCC-CCCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCc
Q 004022 423 LKYLHLIDCKMLQSLP-VLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCN 474 (779)
Q Consensus 423 L~~L~l~~c~~l~~lp-~l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~ 474 (779)
+.+..=..++.++.+| .+|....+|++.+|.+.....+.+.+| .+++++++
T Consensus 424 ~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~~~~~l-~~dls~n~ 475 (498)
T KOG4237|consen 424 LDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDELLRSL-LLDLSNNR 475 (498)
T ss_pred hhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHHHHhhh-hcccccCc
Confidence 5555444555666666 366667777777777665544455566 66776643
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-16 Score=167.57 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=81.2
Q ss_pred ccEEeeeCCCCCc----ccccccCCC-CCCcEEecccccCCc----ccchhhhcCccCcEeecCCcCCC-----cCCccC
Q 004022 213 LEVLDLRGCKRLK----RISTSFCKL-RSLVTLILLGCLNLE----HFPEILEKMEHLKRIYSDRTPIT-----ELPSSF 278 (779)
Q Consensus 213 L~~L~L~~~~~~~----~lp~~l~~l-~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~-----~lp~~l 278 (779)
|++|++++|.... .+...+..+ ++|+.|++++|.+.. .++..+..+++|++|++++|.++ .++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 5555555554431 112223333 555555555555442 22333444455555555555554 122233
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhh----ccCCC
Q 004022 279 ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTF----LLGLS 354 (779)
Q Consensus 279 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~~l~ 354 (779)
..+++|+.|++++|.+.+.. ...++..+..+++|++|++++|.+........ ....+
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~-------------------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEG-------------------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred HhCCCCCEEeccCCccChHH-------------------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 34455666666555432110 01111223344556666666655443111110 11235
Q ss_pred CCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCccC-----ChhccCC-CCCCEEEcCCCC
Q 004022 355 AMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFESL-----PAIIKQM-SQLRFIHLEDFN 411 (779)
Q Consensus 355 ~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~l-----p~~l~~l-~~L~~L~Ls~n~ 411 (779)
.|+.|++++|.+++ +...+..+++|+++++++|.++.- ...+... +.|+++++.+++
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 56666666665542 233344445666666666666522 2223333 556665555543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-16 Score=142.15 Aligned_cols=164 Identities=23% Similarity=0.304 Sum_probs=98.2
Q ss_pred CCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-
Q 004022 85 GLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS- 162 (779)
Q Consensus 85 ~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~- 162 (779)
+++.+ .+...|.+++|+++.+|+.+ .+.+|+.|++.+|+|++ +|.+++.+++|+.|+++-|++ ..+|.
T Consensus 28 gLf~~-s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--------lp~~issl~klr~lnvgmnrl-~~lprg 97 (264)
T KOG0617|consen 28 GLFNM-SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--------LPTSISSLPKLRILNVGMNRL-NILPRG 97 (264)
T ss_pred cccch-hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--------cChhhhhchhhhheecchhhh-hcCccc
Confidence 45555 37777888888888888877 88888888888888887 688888888888888887773 33443
Q ss_pred CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEec
Q 004022 163 NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLIL 242 (779)
Q Consensus 163 ~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 242 (779)
|..++.|+.|++..|.... ..+|..|..++.|+.|.+++|. .+.+|..++++++|+.|.+
T Consensus 98 fgs~p~levldltynnl~e-------------------~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNE-------------------NSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSL 157 (264)
T ss_pred cCCCchhhhhhcccccccc-------------------ccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEee
Confidence 5556677777776665432 2334444444444444444433 2233334444444444444
Q ss_pred ccccCCcccchhhhcCccCcEeecCCcCCCcCCccCC
Q 004022 243 LGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFE 279 (779)
Q Consensus 243 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~ 279 (779)
..|..+ .+|..++.++.|++|.+.+|.++.+|..++
T Consensus 158 rdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 158 RDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred ccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 443322 244555555555555555555555554433
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-16 Score=141.75 Aligned_cols=171 Identities=23% Similarity=0.321 Sum_probs=126.5
Q ss_pred CCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC-CCCCCCCCcEEEecCCcCcc
Q 004022 103 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP-SNLHFVCPVTINFSYCVNLI 181 (779)
Q Consensus 103 l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~ 181 (779)
+..+|..|.+.+...|.|++|+++. +|+.+..+.+|+.|++.+|++ +++| .++.+++|+.|+++-|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~--------vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl-- 91 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTV--------VPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRL-- 91 (264)
T ss_pred HhhcccccchhhhhhhhcccCceee--------cCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhh--
Confidence 3467788889999999999999987 788888999999999988884 4444 355677777777665543
Q ss_pred ccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCc-ccccccCCCCCCcEEecccccCCcccchhhhcCcc
Q 004022 182 EFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLK-RISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH 260 (779)
Q Consensus 182 ~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 260 (779)
..+|..||.++.|+.||+.+|++.+ .+|..|..+..|+.|+|++|. .+.+|..++++++
T Consensus 92 -------------------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~ 151 (264)
T KOG0617|consen 92 -------------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTN 151 (264)
T ss_pred -------------------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcc
Confidence 5677788888888888888776543 567777777778888887754 4556777778888
Q ss_pred CcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCc
Q 004022 261 LKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSL 305 (779)
Q Consensus 261 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l 305 (779)
|+.|.+..|.+-++|..++.++.|++|.+.+|.+ ..+|+.++++
T Consensus 152 lqil~lrdndll~lpkeig~lt~lrelhiqgnrl-~vlppel~~l 195 (264)
T KOG0617|consen 152 LQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL-TVLPPELANL 195 (264)
T ss_pred eeEEeeccCchhhCcHHHHHHHHHHHHhccccee-eecChhhhhh
Confidence 8888888888777887777777888887777543 3445544443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-14 Score=155.29 Aligned_cols=259 Identities=16% Similarity=0.117 Sum_probs=161.1
Q ss_pred EEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC----CCC-CCCCCCCcEEEecCCcCccccCCcCCCcc
Q 004022 117 ELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS----FPS-NLHFVCPVTINFSYCVNLIEFPQISGKVT 191 (779)
Q Consensus 117 ~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~----~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~ 191 (779)
.|+|..+.++.- . ....+..+.+|+.|++++|.+... ++. +...++|++|+++++.... .+
T Consensus 2 ~l~L~~~~l~~~---~---~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~------- 67 (319)
T cd00116 2 QLSLKGELLKTE---R---ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IP------- 67 (319)
T ss_pred ccccccCccccc---c---hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cc-------
Confidence 466777776621 0 334455667788888888774321 222 3345667777777654321 00
Q ss_pred EEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCC---CcEEecccccCCc----ccchhhhcC-ccCcE
Q 004022 192 RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRS---LVTLILLGCLNLE----HFPEILEKM-EHLKR 263 (779)
Q Consensus 192 ~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~ 263 (779)
..+..++..+..+++|+.|++++|.+....+..+..+.+ |++|++++|.... .+...+..+ ++|+.
T Consensus 68 ------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 68 ------RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ------hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 111334556677889999999988876555555544444 9999999887663 233455666 88899
Q ss_pred eecCCcCCC-----cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccC
Q 004022 264 IYSDRTPIT-----ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSH 338 (779)
Q Consensus 264 L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~ 338 (779)
|++++|.++ .++..+..+++|++|++++|.+.+.. ...++..+..+++|+.|++++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------------~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG-------------------IRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH-------------------HHHHHHHHHhCCCCCEEeccC
Confidence 999988887 34445667778888888887654311 011222233456788888888
Q ss_pred CCCCCccCh---hhccCCCCCcEEEecCCCCcc-CCcc----c-CCCCCccEEEEecCCCc-----cCChhccCCCCCCE
Q 004022 339 CKGLESFPR---TFLLGLSAMGLLHISDYAVRE-IPQE----I-AYLSSLEILYLSGNNFE-----SLPAIIKQMSQLRF 404 (779)
Q Consensus 339 n~~~~~~~~---~~~~~l~~L~~L~Ls~~~l~~-~p~~----l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~ 404 (779)
|.+...... ..+..+++|++|++++|.+++ .... + ...+.|++|++++|.++ .+...+..+++|++
T Consensus 203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~ 282 (319)
T cd00116 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282 (319)
T ss_pred CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence 876543211 124467788888888887765 1111 1 12467888888888775 33445666678888
Q ss_pred EEcCCCCCCC
Q 004022 405 IHLEDFNMLQ 414 (779)
Q Consensus 405 L~Ls~n~~~~ 414 (779)
+++++|.+..
T Consensus 283 l~l~~N~l~~ 292 (319)
T cd00116 283 LDLRGNKFGE 292 (319)
T ss_pred EECCCCCCcH
Confidence 8888877664
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-12 Score=151.75 Aligned_cols=209 Identities=23% Similarity=0.241 Sum_probs=101.5
Q ss_pred CCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC-CCCCCC--CCCCCCCcEEEecCCc
Q 004022 102 PLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS-LRSFPS--NLHFVCPVTINFSYCV 178 (779)
Q Consensus 102 ~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~-l~~~p~--~~~l~~L~~L~L~~~~ 178 (779)
.....|........+...+-+|.+..+ +.+. ..++|++|-+.+|.. +..++. |..++.|+.||+++|.
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~--------~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEHI--------AGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred CccccccccchhheeEEEEeccchhhc--------cCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC
Confidence 334455544555666666666666553 2222 334677776666652 334443 4557777777777776
Q ss_pred CccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcC
Q 004022 179 NLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKM 258 (779)
Q Consensus 179 ~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l 258 (779)
.. .++|..++.|-+||+|+++++. +..+|..+.+++.|.+|++..+.....+|.....+
T Consensus 583 ~l--------------------~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 583 SL--------------------SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred cc--------------------CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhc
Confidence 66 4445555555555555555543 23445555555555555555544444444444445
Q ss_pred ccCcEeecCCcCCCc---CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH---HHh-hcccCCcCCccccCcccc
Q 004022 259 EHLKRIYSDRTPITE---LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY---ILA-AASAISQLPSSVALSNML 331 (779)
Q Consensus 259 ~~L~~L~L~~n~i~~---lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~---~~~-~~~~~~~lp~~l~~l~~L 331 (779)
.+|++|.+....... .-..+.++.+|+.+....... .+-..+..+..|.. .+. .+......+..+..+.+|
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L 719 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNL 719 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCc
Confidence 555555554433110 111123444444444433221 11111233333333 111 122333444445566666
Q ss_pred CeeeccCCCCC
Q 004022 332 RSLDSSHCKGL 342 (779)
Q Consensus 332 ~~L~l~~n~~~ 342 (779)
+.|.+.+|.+.
T Consensus 720 ~~L~i~~~~~~ 730 (889)
T KOG4658|consen 720 EELSILDCGIS 730 (889)
T ss_pred ceEEEEcCCCc
Confidence 66666666654
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-12 Score=147.62 Aligned_cols=122 Identities=30% Similarity=0.359 Sum_probs=99.3
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCC-Ccccc-cccCCCCCCcEEecccccCCcccchhhhcCccCcEee
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR-LKRIS-TSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY 265 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~-~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 265 (779)
...+...+-+|.+..++....+ ++|++|-+.++.. ...++ ..|..++.|+.|+|++|...+.+|+.++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4567777888888888776654 4799999998863 33333 3477799999999999999999999999999999999
Q ss_pred cCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH
Q 004022 266 SDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY 310 (779)
Q Consensus 266 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 310 (779)
++++.++.+|.+++++..|.+|++..+.....+|.....+.+|++
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 999999999999999999999999987776666655555666666
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.5e-10 Score=121.39 Aligned_cols=177 Identities=28% Similarity=0.417 Sum_probs=104.5
Q ss_pred CccEEEecCcCCcccCcccCCCC-CccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 189 KVTRLYLGQSAIEEVPSSIECLT-DLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~~l~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
.++.|++.+|.+..++...+.+. +|+.|++++|++ ..+|..+..+++|+.|++++|.+.. +|...+..++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheecc
Confidence 45666666666677777666664 777777777663 3333345566666666666654433 33333355666666666
Q ss_pred CcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccCh
Q 004022 268 RTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPR 347 (779)
Q Consensus 268 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~ 347 (779)
+|.+..+|..++....|++|.+++|... ..+..+
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~------------------------~~~~~~---------------------- 228 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSII------------------------ELLSSL---------------------- 228 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcce------------------------ecchhh----------------------
Confidence 6666666665444444555555554311 111122
Q ss_pred hhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCC
Q 004022 348 TFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP 417 (779)
Q Consensus 348 ~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~ 417 (779)
..+.++..+.+.+|.+..++..++.++++++|++++|.++.++. +..+.+|+.|+++++.+....+
T Consensus 229 ---~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 229 ---SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ---hhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 24444444555555555556666667777777777777777766 6777777777777766655544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-10 Score=119.71 Aligned_cols=204 Identities=18% Similarity=0.143 Sum_probs=106.4
Q ss_pred CCCCCccEEeeeCCCCCcccc--cccCCCCCCcEEecccccCCc--ccchhhhcCccCcEeecCCcCCCcCCcc--CCCC
Q 004022 208 ECLTDLEVLDLRGCKRLKRIS--TSFCKLRSLVTLILLGCLNLE--HFPEILEKMEHLKRIYSDRTPITELPSS--FENL 281 (779)
Q Consensus 208 ~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~n~i~~lp~~--l~~l 281 (779)
.++.+|+...|.++.. +..+ .....+++++.|+|++|-+.. .+......+++|+.|+++.|.+...-++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3456666666666542 2222 234456667777776654432 2344556677777777777776643332 2346
Q ss_pred CCCCEEeccCCCCCCCCC-CCCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEE
Q 004022 282 PGLEVLFVEDCSKLDNLP-DNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLL 359 (779)
Q Consensus 282 ~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 359 (779)
++|+.|.++.|.+...-- ..+..+++|+. .+.+++.+.........+..|++|+|++|.+...........++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 677777777776543211 11123334444 2333322222222233445566666666666655433334556666666
Q ss_pred EecCCCCcc--CCcc-----cCCCCCccEEEEecCCCccCC--hhccCCCCCCEEEcCCCCC
Q 004022 360 HISDYAVRE--IPQE-----IAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNM 412 (779)
Q Consensus 360 ~Ls~~~l~~--~p~~-----l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~ 412 (779)
+++.|.+.+ .|+. ...+++|++|++..|++..++ ..+..+++|+.|.+..|.+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 666666665 3332 344566666666666665444 2344455555555444443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=113.35 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCCcEEEecCCCCccCCcccCCCCCccEEEEecC-CCccCChhccCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEecC
Q 004022 353 LSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGN-NFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDC 431 (779)
Q Consensus 353 l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c 431 (779)
+.+++.|++++|.++.+|. -.++|++|.+++| +++.+|..+ .++|+.|++++|..+. .++.+|+.|++. +
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~---sLP~sLe~L~L~-~ 121 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS---GLPESVRSLEIK-G 121 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc---ccccccceEEeC-C
Confidence 4555566666555555551 1234555555543 344444332 1345555555443222 222334444443 2
Q ss_pred CCCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCcCC--cccC-CCCCCccEEEEecCCCCCCccccc-cCC
Q 004022 432 KMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNML--RSLP-ELPLCLQLLTVRNCNRLQSLPEIL-LCL 507 (779)
Q Consensus 432 ~~l~~lp~l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~~L--~~l~-~~~~sL~~L~i~~C~~L~~lp~~l-~~L 507 (779)
.....++.+| ++|+.|.+.++... ..++ .+|++|+.|.|.+|..+. +|+.+ .+|
T Consensus 122 n~~~~L~~LP---------------------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SL 179 (426)
T PRK15386 122 SATDSIKNVP---------------------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESL 179 (426)
T ss_pred CCCcccccCc---------------------chHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccC
Confidence 2223344444 44555554332211 1112 133455555555555332 33322 245
Q ss_pred cccchhhhhhhccCCCCCcccccccccccceeecccccccCcc
Q 004022 508 QELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGK 550 (779)
Q Consensus 508 ~~L~~~~~~~l~~~~p~l~~lp~~l~~~l~~l~~~~C~~l~~~ 550 (779)
+.|++..+ .|..+......+|..+ .+.|.+|.++..+
T Consensus 180 k~L~ls~n-----~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~ 216 (426)
T PRK15386 180 QSITLHIE-----QKTTWNISFEGFPDGL-DIDLQNSVLLSPD 216 (426)
T ss_pred cEEEeccc-----ccccccCccccccccc-EechhhhcccCHH
Confidence 55554432 1222222333455556 8889999887643
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-10 Score=121.29 Aligned_cols=197 Identities=21% Similarity=0.261 Sum_probs=136.7
Q ss_pred EEEccCCCC-CCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCC-CCcEEeccCCCCCCCCC-CCCCCCCCcE
Q 004022 95 YLHWDTYPL-RTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFK-YLSALSFKGCQSLRSFP-SNLHFVCPVT 171 (779)
Q Consensus 95 ~L~l~~n~l-~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~-~L~~L~Ls~n~~l~~~p-~~~~l~~L~~ 171 (779)
.+....+.+ ..+........+..|++.+|.+++ +|.....+. +|+.|++++|. ...+| ....+++|+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~--------i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD--------IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKN 167 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc--------Cccccccchhhcccccccccc-hhhhhhhhhccccccc
Confidence 455666655 333333355666677777766666 455555553 67777776666 33332 4555667777
Q ss_pred EEecCCcCccccCC--cCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 172 INFSYCVNLIEFPQ--ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 172 L~L~~~~~l~~~~~--~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
|++++|+.....+. ...+|+.|++++|.+..+|..++....|++|.+++|.... .+..+.++.++..+.+.++...
T Consensus 168 L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~- 245 (394)
T COG4886 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE- 245 (394)
T ss_pred cccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-
Confidence 77776654432222 4566777777777788898877777789999999886333 3445777888888887765543
Q ss_pred ccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIG 303 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~ 303 (779)
.++..++.++++++|++++|.++.++. ++.+.+++.|+++++......|....
T Consensus 246 ~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 246 DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence 347778889999999999999999988 89999999999999888776665433
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-11 Score=127.46 Aligned_cols=171 Identities=22% Similarity=0.270 Sum_probs=119.9
Q ss_pred CceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.-...+++.|++..+|..+ .+..|+.|.|.+|.|.. +|.++.++..|++|||+.|+ +..+|.-.-.--|+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~--------ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLk 146 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT--------IPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLPLK 146 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcccee--------cchhhhhhhHHHHhhhccch-hhcCChhhhcCcce
Confidence 3456778888888888777 66778888888888776 67788888888888888887 44444433233344
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|.++ +|+++.+|..++.+.+|..|+.+.|. +..+|..++++.+|+.|.+..|... .
T Consensus 147 vli~s---------------------NNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~-~ 203 (722)
T KOG0532|consen 147 VLIVS---------------------NNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE-D 203 (722)
T ss_pred eEEEe---------------------cCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh-h
Confidence 44444 44557777777777777788877776 4455666777778888877776544 3
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCC
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 295 (779)
+|+.+..+ .|..||++.|++..+|-.|.+|+.|++|-|.+|++.
T Consensus 204 lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 204 LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 55555544 477788888888888888888888888888776653
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-09 Score=102.50 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCcccc-CCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCc
Q 004022 103 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQ-NFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCV 178 (779)
Q Consensus 103 l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~-~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~ 178 (779)
|+.+|...++.++++|+|++|.|+.+ +.++ .+.+|+.|+|++|. ++.++.+..+++|++|++++|.
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~I---------e~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTI---------ENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR 75 (175)
T ss_dssp ------------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS-
T ss_pred cccccccccccccccccccccccccc---------cchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC
Confidence 33444433444455555555555432 1122 24455555555554 2333344444444444444443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.2e-10 Score=119.13 Aligned_cols=189 Identities=23% Similarity=0.299 Sum_probs=96.1
Q ss_pred EEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCC
Q 004022 192 RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPI 271 (779)
Q Consensus 192 ~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i 271 (779)
..+++.|++.++|..+..+..|+.+.+..|. ...+|..++++..|..|+|+.|++. .+|..++.++ |+.|-+++|++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 3455555555555554444445555444433 2334444444444444444443322 2333333332 44444444444
Q ss_pred CcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhcc
Q 004022 272 TELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLL 351 (779)
Q Consensus 272 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 351 (779)
+.+|..++.+..|..|+.+. +.+..+|..++.+.+|+.|++..|++...++.. .
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~------------------------nei~slpsql~~l~slr~l~vrRn~l~~lp~El--~ 209 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSK------------------------NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL--C 209 (722)
T ss_pred ccCCcccccchhHHHhhhhh------------------------hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH--h
Confidence 44444444444444444443 344455555555556666666655555443332 1
Q ss_pred CCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhc---cCCCCCCEEEcCCC
Q 004022 352 GLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAII---KQMSQLRFIHLEDF 410 (779)
Q Consensus 352 ~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l---~~l~~L~~L~Ls~n 410 (779)
.-.|..||++.|++..+|..|..|..|++|-|.+|.+++-|..+ +...-.|+|+..-|
T Consensus 210 -~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 -SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 23366667777777777777777777777777777777666443 22333455555555
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.7e-10 Score=115.42 Aligned_cols=196 Identities=19% Similarity=0.161 Sum_probs=107.5
Q ss_pred CCceEEEccCCCCCCCCC--CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCC--CC
Q 004022 91 KKLRYLHWDTYPLRTLPS--NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSN--LH 165 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~--~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~--~~ 165 (779)
.+||...+++++....+. .. .+++++.|||+.|-+.. |+. +-.-...|++|+.|+|+.|++..-.... ..
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-w~~----v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-WFP----VLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-HHH----HHHHHHhcccchhcccccccccCCccccchhh
Confidence 578888888888877774 23 78888888888887765 221 2223447888888888888754433332 23
Q ss_pred CCCCcEEEecCCcCcc----ccCCcCCCccEEEecCcC-CcccCcccCCCCCccEEeeeCCCCCccc-ccccCCCCCCcE
Q 004022 166 FVCPVTINFSYCVNLI----EFPQISGKVTRLYLGQSA-IEEVPSSIECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVT 239 (779)
Q Consensus 166 l~~L~~L~L~~~~~l~----~~~~~~~~L~~L~L~~n~-i~~lp~~l~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~ 239 (779)
++.|+.|.++.|.... .+...+++|..|+|..|. +..-..+...+..|+.|+|++|.+...- -...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 6778888888886543 222334555566665553 2111122233455666666665543321 012444555555
Q ss_pred EecccccCCcc-cchh-----hhcCccCcEeecCCcCCCcCCc--cCCCCCCCCEEeccC
Q 004022 240 LILLGCLNLEH-FPEI-----LEKMEHLKRIYSDRTPITELPS--SFENLPGLEVLFVED 291 (779)
Q Consensus 240 L~L~~~~~~~~-~p~~-----l~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~ 291 (779)
|+++.|.+... .|+. ...+++|++|++..|+|.++++ .+..+++|+.|.+..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 55555544321 1221 2344556666666666554443 133344444444433
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-09 Score=100.19 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=37.4
Q ss_pred hhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCC
Q 004022 44 FTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCS 123 (779)
Q Consensus 44 f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n 123 (779)
+.+..++|.|+|.+|.|+.| +++.....+|+.|++++|.+++++..-.+++|++|++++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--------------------e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--------------------ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN 74 (175)
T ss_dssp -----------------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS
T ss_pred cccccccccccccccccccc--------------------cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCC
Confidence 34555789999999988522 2344222589999999999999886558899999999999
Q ss_pred CCCCccCCCCcccCccc-cCCCCCcEEeccCCCCCC--CCCCCCCCCCCcEEEecCCcC
Q 004022 124 KVEQPWEGEKACVPSSI-QNFKYLSALSFKGCQSLR--SFPSNLHFVCPVTINFSYCVN 179 (779)
Q Consensus 124 ~i~~l~~g~~~~lp~~~-~~l~~L~~L~Ls~n~~l~--~~p~~~~l~~L~~L~L~~~~~ 179 (779)
+|+++ ...+ ..+++|++|++++|++.. .+-.+..+++|+.|++.+|+.
T Consensus 75 ~I~~i--------~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 75 RISSI--------SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ---S---------CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCCcc--------ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 99874 3333 368899999999988432 233345577788888877765
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-09 Score=105.84 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=16.9
Q ss_pred cCccCcEeecCCcCCCcCC--ccCCCCCCCCEEeccCCCC
Q 004022 257 KMEHLKRIYSDRTPITELP--SSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 257 ~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~~~~ 294 (779)
++-+|..||+++|+|..+. .+++++|.|+++.|.+|++
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 3334444444444444332 2344555555555544443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-08 Score=103.89 Aligned_cols=136 Identities=22% Similarity=0.342 Sum_probs=93.1
Q ss_pred ccCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEecCCCCCCCCC-CCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCc
Q 004022 396 IKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPV-LPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCN 474 (779)
Q Consensus 396 l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~ 474 (779)
+..+.+++.|++++| .+..+|.++.+|++|.+++|..+..+|. +|.+|++|++++|..+..+| ++|+.|++. +.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~-~n 122 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIK-GS 122 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeC-CC
Confidence 334566666666666 4455566666777788888888777774 67788888888886555554 678888885 45
Q ss_pred CCcccCCCCCCccEEEEecCCCC--CCccccc-cCCcccchhhhhhhccCCCCCcccccccccccceeecccc
Q 004022 475 MLRSLPELPLCLQLLTVRNCNRL--QSLPEIL-LCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNC 544 (779)
Q Consensus 475 ~L~~l~~~~~sL~~L~i~~C~~L--~~lp~~l-~~L~~L~~~~~~~l~~~~p~l~~lp~~l~~~l~~l~~~~C 544 (779)
....++.+|++|+.|.+.+++.. ..+|..+ .+|+.|.+.+|.. ..+|+.+|.+++.|.+.++
T Consensus 123 ~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~--------i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 123 ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN--------IILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc--------ccCcccccccCcEEEeccc
Confidence 55567778889999998664422 2334333 4788888887632 2467778888888888664
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.1e-10 Score=111.38 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=28.9
Q ss_pred CCCCcEEecccccCCc----ccchhhhcCccCcEeecCCcCCC-----cCCccCCCCCCCCEEeccCCC
Q 004022 234 LRSLVTLILLGCLNLE----HFPEILEKMEHLKRIYSDRTPIT-----ELPSSFENLPGLEVLFVEDCS 293 (779)
Q Consensus 234 l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~ 293 (779)
-+.|+++...+|..-. .+...+...+.|+.+.+..|.|. -+...+..+++|+.|+|.+|.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 3445555555444321 22334455555666666555554 122334555555555555544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-09 Score=104.38 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=52.2
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
..|..||+++|.|+.+..+. -.+.++.|++++|.|..+ ..+..+++|+.|||++|.+......-..+-|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v---------~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV---------QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee---------hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 46778888888888877776 457788888888887753 33667788888888887633222222335555
Q ss_pred cEEEecCCc
Q 004022 170 VTINFSYCV 178 (779)
Q Consensus 170 ~~L~L~~~~ 178 (779)
+.|.|++|.
T Consensus 355 KtL~La~N~ 363 (490)
T KOG1259|consen 355 KTLKLAQNK 363 (490)
T ss_pred eeeehhhhh
Confidence 555555553
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-08 Score=101.48 Aligned_cols=198 Identities=18% Similarity=0.232 Sum_probs=108.2
Q ss_pred ccCCCCCccEEeeeCCCCCcc----cccccCCCCCCcEEeccccc---CCcccch-------hhhcCccCcEeecCCcCC
Q 004022 206 SIECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCL---NLEHFPE-------ILEKMEHLKRIYSDRTPI 271 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~---~~~~~p~-------~l~~l~~L~~L~L~~n~i 271 (779)
.+..+..++.|++++|.+-.. +...+.+.++|+..++++-- ....+|+ .+...++|++|+||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 445677888999999876432 33446667788888887621 1122333 344566888888888877
Q ss_pred C-cCC----ccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccC
Q 004022 272 T-ELP----SSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP 346 (779)
Q Consensus 272 ~-~lp----~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~ 346 (779)
. .-+ .-+..+..|++|.|.+|.+...--..++ ..|...- . ......-+.|+++....|++.....
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~-~-------~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA-V-------NKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH-H-------HhccCCCcceEEEEeeccccccccH
Confidence 6 222 2245577777777777654321111010 0011100 0 0112334567777777766544321
Q ss_pred h---hhccCCCCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCc-----cCChhccCCCCCCEEEcCCCCCC
Q 004022 347 R---TFLLGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 347 ~---~~~~~l~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
. ..+...+.|+.+.+..|.+.. +...+..+++|+.|||+.|-|+ .+...+..+++|+.|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 1 124445666666666666543 2334566666666666666665 23344556666666666555443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.1e-07 Score=105.44 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=56.8
Q ss_pred ccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC-cCCccCCCCCCCCEEeccC
Q 004022 213 LEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVED 291 (779)
Q Consensus 213 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~ 291 (779)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+. .+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666666666666666666666666666666666666666666666666666665 4555566666666666666
Q ss_pred CCCCCCCCCCCC
Q 004022 292 CSKLDNLPDNIG 303 (779)
Q Consensus 292 ~~~~~~lp~~l~ 303 (779)
|++.+.+|..+.
T Consensus 500 N~l~g~iP~~l~ 511 (623)
T PLN03150 500 NSLSGRVPAALG 511 (623)
T ss_pred CcccccCChHHh
Confidence 666666665544
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-08 Score=110.26 Aligned_cols=174 Identities=23% Similarity=0.260 Sum_probs=105.5
Q ss_pred CCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCC
Q 004022 86 LDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNL 164 (779)
Q Consensus 86 l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~ 164 (779)
+..+ .+|..|++.+|.++.+.... .+.+|++|++++|.|++++. +..++.|+.|++++|. +..+..+.
T Consensus 91 l~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---------l~~l~~L~~L~l~~N~-i~~~~~~~ 159 (414)
T KOG0531|consen 91 LSKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---------LSTLTLLKELNLSGNL-ISDISGLE 159 (414)
T ss_pred cccc-cceeeeeccccchhhcccchhhhhcchheeccccccccccc---------hhhccchhhheeccCc-chhccCCc
Confidence 4444 57888888888888777733 77888888888888877633 2266667788888877 45555555
Q ss_pred CCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcc-cCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecc
Q 004022 165 HFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSS-IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILL 243 (779)
Q Consensus 165 ~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~ 243 (779)
.+++|+.+++++|.. ..+... ...+.+|+.+.+.+|.+...- .+..+..+..+++.
T Consensus 160 ~l~~L~~l~l~~n~i---------------------~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRI---------------------VDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLL 216 (414)
T ss_pred cchhhhcccCCcchh---------------------hhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcc
Confidence 566666666666655 333332 345556666666665533221 12223333333444
Q ss_pred cccCCcccchhhhcCc--cCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCC
Q 004022 244 GCLNLEHFPEILEKME--HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~--~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 295 (779)
.|.+...-+ +..+. +|+.+++++|.+..++..+..+..+..|++.++...
T Consensus 217 ~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 217 DNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 444332111 11112 377888888888877666777888888888776553
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.7e-07 Score=103.16 Aligned_cols=107 Identities=23% Similarity=0.169 Sum_probs=81.6
Q ss_pred CCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCC
Q 004022 145 YLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR 223 (779)
Q Consensus 145 ~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~ 223 (779)
.++.|+|++|.+.+.+|. +..+++|+.|+|++|... ..+|..++.+++|+.|+|++|.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--------------------g~iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--------------------GNIPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--------------------CcCChHHhCCCCCCEEECCCCCC
Confidence 467788888887666665 556788888888877665 56777778888888888888888
Q ss_pred CcccccccCCCCCCcEEecccccCCcccchhhhcC-ccCcEeecCCcCC
Q 004022 224 LKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKM-EHLKRIYSDRTPI 271 (779)
Q Consensus 224 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l-~~L~~L~L~~n~i 271 (779)
.+.+|..++.+++|+.|+|++|.+.+.+|..+..+ .++..+++.+|..
T Consensus 479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 88888888888888888888888888888777653 4566777777754
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-07 Score=71.09 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=46.5
Q ss_pred CceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCC
Q 004022 92 KLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 155 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~ 155 (779)
+|++|++++|.++.+|.. | .+++|++|++++|.++.+ -|.+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-------~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-------PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-------ETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-------CHHHHcCCCCCCEEeCcCCc
Confidence 788888888888888864 4 788888888888888875 55678888888888888876
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8e-08 Score=106.34 Aligned_cols=171 Identities=20% Similarity=0.211 Sum_probs=110.0
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
..++.+.++.|.++.+-... .+++|+.|++.+|+|+.+ ...+..+++|++|++++|. ++.+..+..++.|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i--------~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L 142 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI--------ENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLL 142 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhc--------ccchhhhhcchheeccccc-cccccchhhccch
Confidence 35556666666666633323 667777777777777663 2224466777777777776 4444444555555
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc-cccCCCCCCcEEecccccCC
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~ 248 (779)
+.|++++|. |..+. .+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus 143 ~~L~l~~N~---------------------i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 143 KELNLSGNL---------------------ISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhheeccCc---------------------chhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 555555554 45544 44558999999999998765544 2 467899999999998765
Q ss_pred cccchhhhcCccCcEeecCCcCCCcCCccCCCCCC--CCEEeccCCCCCC
Q 004022 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPG--LEVLFVEDCSKLD 296 (779)
Q Consensus 249 ~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~--L~~L~L~~~~~~~ 296 (779)
.. +.+..+..+..+++..|.++.+-. +..+.. |+.++++++.+..
T Consensus 200 ~i--~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 200 EI--EGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred cc--cchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccc
Confidence 42 233344455556888888886643 223333 8999999987654
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-06 Score=67.38 Aligned_cols=57 Identities=28% Similarity=0.350 Sum_probs=30.3
Q ss_pred CccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccc
Q 004022 189 KVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC 245 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 245 (779)
+|+.|++++|.+..+|. .+..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555553 4455555555555555544444444555555555555554
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.4e-07 Score=89.74 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=66.4
Q ss_pred CceEEEccCCCCCCCCCC--C--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCC-CCC
Q 004022 92 KLRYLHWDTYPLRTLPSN--F--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSN-LHF 166 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~--~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~-~~l 166 (779)
-+..|-+.++.|...... | ....+++|||.+|.|+. |.. +..-+.+|+.|++|+|+.|.+...+... ...
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-Wse----I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-WSE----IGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-HHH----HHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 444566667766554433 2 67788999999999886 544 3344568899999999888865544333 345
Q ss_pred CCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCC
Q 004022 167 VCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCK 222 (779)
Q Consensus 167 ~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~ 222 (779)
.+|+.|.|.|..... +.....+..+++++.|.++.|.
T Consensus 121 ~nl~~lVLNgT~L~w-------------------~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSW-------------------TQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cceEEEEEcCCCCCh-------------------hhhhhhhhcchhhhhhhhccch
Confidence 566666665543221 3334445566666666666653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.9e-07 Score=91.02 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=28.0
Q ss_pred ccEEEecCcCCc--ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC
Q 004022 190 VTRLYLGQSAIE--EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 190 L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 248 (779)
|+.|+|++..|+ .+..-+..+.+|+.|.+.++++...+...+.+-.+|+.|+|+.|+..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc
Confidence 444444444442 23333344455555555555544444444444555555555555443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.7e-07 Score=89.54 Aligned_cols=165 Identities=24% Similarity=0.183 Sum_probs=114.5
Q ss_pred cccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecC-CCccC--ChhccCCCCCCE
Q 004022 329 NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGN-NFESL--PAIIKQMSQLRF 404 (779)
Q Consensus 329 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n-~l~~l--p~~l~~l~~L~~ 404 (779)
+.|+.||++...++..--...+..+..|+.|.+.++.+.+ +-..++.-.+|+.|+|+++ .+++. .-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588899988877766555557788999999999999988 6677888899999999996 56633 345789999999
Q ss_pred EEcCCCCCCCcCC-----CCCCCccEEEEecCCCCCCCC-------CCCCCccEEEeeCCCCCCCC--CC--CCCCccEE
Q 004022 405 IHLEDFNMLQSLP-----ELPLCLKYLHLIDCKMLQSLP-------VLPFCLESLDLTGCNMLRSL--PE--LPLCLQYL 468 (779)
Q Consensus 405 L~Ls~n~~~~~~~-----~~~~~L~~L~l~~c~~l~~lp-------~l~~~L~~L~ls~n~~l~~l--~~--~~~~L~~L 468 (779)
|+|+.|...+..- ..-+.|+.|++++|..--... ..| .|.+||+|.|..+..- .. .++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp-~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC-ceeeeccccccccCchHHHHHHhcchheee
Confidence 9999998766442 234778889999886422111 123 6777777777655431 11 23677777
Q ss_pred eeecCcCCccc----CCCCCCccEEEEecC
Q 004022 469 NLEDCNMLRSL----PELPLCLQLLTVRNC 494 (779)
Q Consensus 469 ~l~~c~~L~~l----~~~~~sL~~L~i~~C 494 (779)
.++.|-.+--- -...++|..|++.||
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 77777544210 023467777777776
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3e-07 Score=100.95 Aligned_cols=129 Identities=19% Similarity=0.087 Sum_probs=84.2
Q ss_pred CccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchh-hhcCccCcEeecC
Q 004022 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI-LEKMEHLKRIYSD 267 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~L~ 267 (779)
+|...+.++|.+..+..++.-++.|+.|||++|++...- .+..++.|++|+|++|.+.. +|.. ...+ .|+.|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhh-hheeeeec
Confidence 567777777888878778877888888888888765542 46677888888888766543 2321 2222 37778888
Q ss_pred CcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCc
Q 004022 268 RTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES 344 (779)
Q Consensus 268 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 344 (779)
+|.++++-. +.++.+|+.||+++|-+.+. ..| .-+..+..|+.|.+.||++.-.
T Consensus 241 nN~l~tL~g-ie~LksL~~LDlsyNll~~h-----seL-----------------~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 241 NNALTTLRG-IENLKSLYGLDLSYNLLSEH-----SEL-----------------EPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ccHHHhhhh-HHhhhhhhccchhHhhhhcc-----hhh-----------------hHHHHHHHHHHHhhcCCccccC
Confidence 887777643 67777788888777543221 000 0123456677888888876543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2e-06 Score=94.60 Aligned_cols=116 Identities=22% Similarity=0.156 Sum_probs=86.5
Q ss_pred hcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC
Q 004022 314 AASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP 393 (779)
Q Consensus 314 ~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp 393 (779)
.++.+..+...+.-++.|+.|++++|++...- .+..++.|++|||++|.+..+|..-..--.|+.|.|++|.++++-
T Consensus 172 syN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~ 248 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR 248 (1096)
T ss_pred chhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh
Confidence 34445555666777888999999999887654 366899999999999999988764322234999999999988876
Q ss_pred hhccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCC
Q 004022 394 AIIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKM 433 (779)
Q Consensus 394 ~~l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~ 433 (779)
.+.++.+|+.||+++|-+.+.-.- .+..|+.|++.+|+.
T Consensus 249 -gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 249 -GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 478899999999999876653221 235677788888764
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.5e-05 Score=54.95 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC
Q 004022 355 AMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP 393 (779)
Q Consensus 355 ~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp 393 (779)
+|++|++++|+++++|..++.+++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666665555566666666666666655544
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=1.6e-05 Score=79.01 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=94.2
Q ss_pred CCCCCcEEecccccCCc--ccchhhhcCccCcEeecCCcCCCcCCccC-CCCCCCCEEeccCCCCCCC-CCCCCCCchhH
Q 004022 233 KLRSLVTLILLGCLNLE--HFPEILEKMEHLKRIYSDRTPITELPSSF-ENLPGLEVLFVEDCSKLDN-LPDNIGSLEYL 308 (779)
Q Consensus 233 ~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~n~i~~lp~~l-~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L 308 (779)
..+.++.|+|.+|.+.. ++...+.+++.|+.|+++.|++...-..+ ..+.+|+.|.|.+..+... .-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35677888888876653 45556778888888888888776432222 3456778887776544321 12223344444
Q ss_pred HH-HHhhcccCCc-CC-cccc-CccccCeeeccCCCCCCccCh-hhccCCCCCcEEEecCCCCccC--CcccCCCCCccE
Q 004022 309 YY-ILAAASAISQ-LP-SSVA-LSNMLRSLDSSHCKGLESFPR-TFLLGLSAMGLLHISDYAVREI--PQEIAYLSSLEI 381 (779)
Q Consensus 309 ~~-~~~~~~~~~~-lp-~~l~-~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~Ls~~~l~~~--p~~l~~l~~L~~ 381 (779)
+. .++.++.... +. .... .-+.+++|....|........ .....+|++..+.+..|.+.+. ......++.+--
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 44 3332211000 00 0000 011233333333321110000 0023466777777777766653 234555666677
Q ss_pred EEEecCCCccCC--hhccCCCCCCEEEcCCCCCCC
Q 004022 382 LYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 382 L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
|+|+.|++.+.. +.+..+++|..|.++++++..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 777777776544 446677777776666555543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=2e-06 Score=89.21 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=17.6
Q ss_pred CCcEEeccCCCCCCCCCC---CCCCCCCcEEEecCCcCc
Q 004022 145 YLSALSFKGCQSLRSFPS---NLHFVCPVTINFSYCVNL 180 (779)
Q Consensus 145 ~L~~L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~~~~l 180 (779)
.|+.|.+++|.-...-+- ...++++++|.+.+|..+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i 177 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI 177 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceec
Confidence 455566666553322111 123566666666666543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=52.18 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=32.3
Q ss_pred CCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCC
Q 004022 377 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 377 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
++|++|++++|+++.+|..+++|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999998765
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0002 Score=67.59 Aligned_cols=87 Identities=11% Similarity=-0.018 Sum_probs=60.0
Q ss_pred CCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCC--CCCCCC
Q 004022 86 LDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSL--RSFPSN 163 (779)
Q Consensus 86 l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l--~~~p~~ 163 (779)
+.....+.-.+|++.|.+..++..-.++.|..|.|.+|+|+.+ -|.--..+++|+.|.|.+|.+. +++..+
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I-------~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRI-------DPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceee-------ccchhhhccccceEEecCcchhhhhhcchh
Confidence 3334457778888888888777666888888888888888876 2322335677888888887732 234445
Q ss_pred CCCCCCcEEEecCCcC
Q 004022 164 LHFVCPVTINFSYCVN 179 (779)
Q Consensus 164 ~~l~~L~~L~L~~~~~ 179 (779)
..++.|+.|.+-+|+.
T Consensus 110 a~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccCCccceeeecCCch
Confidence 6677777777777654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=6.1e-06 Score=85.72 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=20.5
Q ss_pred CCCCCccEEEEecCCCc--cCChhccCCCCCCEEEcCCCCCC
Q 004022 374 AYLSSLEILYLSGNNFE--SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 374 ~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
..+..|+.+.|+++... ..-+.+..+++|+.+++.+|...
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 34455555555555433 22234555556666666655544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.35 E-value=7.7e-06 Score=80.11 Aligned_cols=61 Identities=21% Similarity=0.071 Sum_probs=31.5
Q ss_pred CCCCcEEecccccCCc----ccchhhhcCccCcEeecCCcCCCc------CCccCCCCCCCCEEeccCCCC
Q 004022 234 LRSLVTLILLGCLNLE----HFPEILEKMEHLKRIYSDRTPITE------LPSSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 234 l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~~------lp~~l~~l~~L~~L~L~~~~~ 294 (779)
-+.|++.....|++.. .....+..-.+|+++.+..|.|.. +-..+..+.+|+.|+|.+|.+
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 3445555555544321 112223334567777777776651 112244566777777777654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.32 E-value=3.8e-05 Score=75.42 Aligned_cols=151 Identities=20% Similarity=0.188 Sum_probs=84.4
Q ss_pred hhhcCccCcEeecCCcCCC-cCCc----cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCc
Q 004022 254 ILEKMEHLKRIYSDRTPIT-ELPS----SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALS 328 (779)
Q Consensus 254 ~l~~l~~L~~L~L~~n~i~-~lp~----~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l 328 (779)
.+-++++|+..+|+.|.+. +.|. .++.-+.|++|.+++|..-..--..++ +.|.+ +..+.. ...-
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~-la~nKK-------aa~k 156 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFH-LAYNKK-------AADK 156 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHH-HHHHhh-------hccC
Confidence 3445566666666666665 3332 245667788888877643211111111 01111 111111 2234
Q ss_pred cccCeeeccCCCCCCccCh---hhccCCCCCcEEEecCCCCcc------CCcccCCCCCccEEEEecCCCcc-----CCh
Q 004022 329 NMLRSLDSSHCKGLESFPR---TFLLGLSAMGLLHISDYAVRE------IPQEIAYLSSLEILYLSGNNFES-----LPA 394 (779)
Q Consensus 329 ~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~Ls~~~l~~------~p~~l~~l~~L~~L~Ls~n~l~~-----lp~ 394 (779)
|.|++.....|++...... ..+..-.+|+.+.+..|.|.. +-..+..+.+|+.|||+.|-++. +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 5677888877776543221 112333578888888887654 12235567888888888887772 234
Q ss_pred hccCCCCCCEEEcCCCCCCC
Q 004022 395 IIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 395 ~l~~l~~L~~L~Ls~n~~~~ 414 (779)
.+...+.|+.|.+.+|-+..
T Consensus 237 al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred Hhcccchhhhccccchhhcc
Confidence 45667778887777776544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=4.2e-06 Score=73.59 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=64.1
Q ss_pred CCceEEEccCCCCCCCCCCC--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVC 168 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~ 168 (779)
.+|...++++|.++++|..| .++-++.|+|++|.|++ +|..+..++.|+.|+++.|.+......+..+.+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--------vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--------VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--------chHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence 47888999999999999888 67789999999999998 788899999999999999985544333445666
Q ss_pred CcEEEecCCcC
Q 004022 169 PVTINFSYCVN 179 (779)
Q Consensus 169 L~~L~L~~~~~ 179 (779)
|-.|+..+|..
T Consensus 125 l~~Lds~~na~ 135 (177)
T KOG4579|consen 125 LDMLDSPENAR 135 (177)
T ss_pred HHHhcCCCCcc
Confidence 66666655543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00046 Score=65.26 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=70.1
Q ss_pred ceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCC-CCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLH-FVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~-l~~L~ 170 (779)
=+.+++.++.+..+.... ...+...+||++|.+..+ ..|..++.|.+|.|..|++...-|.+.. +++|+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l---------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL---------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLK 91 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc---------ccCCCccccceEEecCCcceeeccchhhhccccc
Confidence 455666666654443322 455667777777777653 2233666777777777765544444333 44555
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcccc---cccCCCCCCcEEecccc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKRIS---TSFCKLRSLVTLILLGC 245 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp---~~l~~l~~L~~L~L~~~ 245 (779)
.|.+.+|. |.++-+ .+..+++|++|.+-+|.....-- -.+..+++|+.||..+-
T Consensus 92 ~L~LtnNs---------------------i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 92 TLILTNNS---------------------IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eEEecCcc---------------------hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 55555554 344332 34556778888877776433211 12556777777777653
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=9.5e-05 Score=85.74 Aligned_cols=128 Identities=17% Similarity=0.138 Sum_probs=82.7
Q ss_pred CCCcEEeccCCCCCC-CCCC--CCCCCCCcEEEecCCcCc----cccCCcCCCccEEEecCcCCcccCcccCCCCCccEE
Q 004022 144 KYLSALSFKGCQSLR-SFPS--NLHFVCPVTINFSYCVNL----IEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVL 216 (779)
Q Consensus 144 ~~L~~L~Ls~n~~l~-~~p~--~~~l~~L~~L~L~~~~~l----~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 216 (779)
.+|++||++|..... ..|. ...+|+|+.|.+.+-... ..+-..+++|..||+++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 578888888865432 2332 223888888888874332 23445677888888888888877 678888888888
Q ss_pred eeeCCCCCc-ccccccCCCCCCcEEecccccCCccc------chhhhcCccCcEeecCCcCCC
Q 004022 217 DLRGCKRLK-RISTSFCKLRSLVTLILLGCLNLEHF------PEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 217 ~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~------p~~l~~l~~L~~L~L~~n~i~ 272 (779)
.+.+-.+.. ..-..+.+|++|+.||+|........ -+.-..+|+|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 887754432 11123556888888888875543321 111224677777777777665
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00013 Score=84.50 Aligned_cols=143 Identities=24% Similarity=0.294 Sum_probs=86.9
Q ss_pred cccCeeeccCCCCCCc-cChhhccCCCCCcEEEecCCCCcc--CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEE
Q 004022 329 NMLRSLDSSHCKGLES-FPRTFLLGLSAMGLLHISDYAVRE--IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFI 405 (779)
Q Consensus 329 ~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~Ls~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 405 (779)
.+|+.|+++|...... .+.....-+|+|+.|.+++-.+.. +.....++|+|..||+|+++++.+ .+++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5677788877544322 233334567888888888765543 334456778888888888888777 567888888888
Q ss_pred EcCCCCCCC--cCCC--CCCCccEEEEecCCCCCCC----------CCCCCCccEEEeeCCCCCCCCCC----CCCCccE
Q 004022 406 HLEDFNMLQ--SLPE--LPLCLKYLHLIDCKMLQSL----------PVLPFCLESLDLTGCNMLRSLPE----LPLCLQY 467 (779)
Q Consensus 406 ~Ls~n~~~~--~~~~--~~~~L~~L~l~~c~~l~~l----------p~l~~~L~~L~ls~n~~l~~l~~----~~~~L~~ 467 (779)
.+.+-.+.. .+-. .+.+|+.||++.-+....- -.+| .|+.||.|+..+.+.+-+ ..++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 777755543 1112 2366777777665543321 1244 777787777666543322 2255555
Q ss_pred EeeecC
Q 004022 468 LNLEDC 473 (779)
Q Consensus 468 L~l~~c 473 (779)
+.+-+|
T Consensus 280 i~~~~~ 285 (699)
T KOG3665|consen 280 IAALDC 285 (699)
T ss_pred hhhhhh
Confidence 555443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=3.6e-05 Score=67.89 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=89.0
Q ss_pred ccccEEEEEeecccccccccCh--hhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEE
Q 004022 20 GTDAIEGIFLDLSKIKGINLDP--RAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLH 97 (779)
Q Consensus 20 g~~~i~~i~Ld~s~~~~~~l~~--~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~ 97 (779)
+.++.|.=.+|++..+.+.+.. ..+.+...|+..+|++|.+. .+|+.+...++.++.|+
T Consensus 23 cedakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-------------------~fp~kft~kf~t~t~lN 83 (177)
T KOG4579|consen 23 CEDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-------------------KFPKKFTIKFPTATTLN 83 (177)
T ss_pred hHHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-------------------hCCHHHhhccchhhhhh
Confidence 3445556667777776554543 33456667888899999883 67777776666899999
Q ss_pred ccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC
Q 004022 98 WDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP 161 (779)
Q Consensus 98 l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p 161 (779)
+.+|.+.++|..+ .++.|+.|+++.|.+.. .|..+..|.+|-.|+..+|.. ..+|
T Consensus 84 l~~neisdvPeE~Aam~aLr~lNl~~N~l~~--------~p~vi~~L~~l~~Lds~~na~-~eid 139 (177)
T KOG4579|consen 84 LANNEISDVPEELAAMPALRSLNLRFNPLNA--------EPRVIAPLIKLDMLDSPENAR-AEID 139 (177)
T ss_pred cchhhhhhchHHHhhhHHhhhcccccCcccc--------chHHHHHHHhHHHhcCCCCcc-ccCc
Confidence 9999999999988 89999999999999987 688888899999999988873 3443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0022 Score=63.40 Aligned_cols=104 Identities=22% Similarity=0.168 Sum_probs=64.9
Q ss_pred CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCC--CCcc-CCcccCCCCCccEEEEecCCCccCC--hhccCCCC
Q 004022 327 LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY--AVRE-IPQEIAYLSSLEILYLSGNNFESLP--AIIKQMSQ 401 (779)
Q Consensus 327 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~--~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~ 401 (779)
.+..|+.|++.++.+++... +..+++|+.|.++.| .+.. ++.....+|+|++|++++|++..+. ..+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~---~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN---FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeeccc---CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 44556666666655544322 446778888888888 4444 4444555688999999999877432 23667777
Q ss_pred CCEEEcCCCCCCCcC------CCCCCCccEEEEecCCC
Q 004022 402 LRFIHLEDFNMLQSL------PELPLCLKYLHLIDCKM 433 (779)
Q Consensus 402 L~~L~Ls~n~~~~~~------~~~~~~L~~L~l~~c~~ 433 (779)
|..|++.+|.-...- ..++++|++|+-.++..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 888888877665521 12445666665555443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0042 Score=61.46 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=55.8
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCC--CCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSL--RSFPSNLHFVC 168 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l--~~~p~~~~l~~ 168 (779)
..|+.|.+.+..++++...-.+++|+.|.++.|...-. .| ++....++++|++|++++|++. ..++.+..+.+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~-~~----l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS-GG----LEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCccccc-cc----ceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 46777777777776665555777888888888833211 01 3333445688888888888743 34555566777
Q ss_pred CcEEEecCCcCc
Q 004022 169 PVTINFSYCVNL 180 (779)
Q Consensus 169 L~~L~L~~~~~l 180 (779)
|..|++..|...
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 888888887654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0038 Score=70.80 Aligned_cols=89 Identities=27% Similarity=0.293 Sum_probs=42.0
Q ss_pred cCCCCCccEEeeeCC-CCCcccc----cccCCCCCCcEEecccccC-Ccccchhhh-cCccCcEeecCCcC-CC--cCCc
Q 004022 207 IECLTDLEVLDLRGC-KRLKRIS----TSFCKLRSLVTLILLGCLN-LEHFPEILE-KMEHLKRIYSDRTP-IT--ELPS 276 (779)
Q Consensus 207 l~~l~~L~~L~L~~~-~~~~~lp----~~l~~l~~L~~L~L~~~~~-~~~~p~~l~-~l~~L~~L~L~~n~-i~--~lp~ 276 (779)
....+.|+.|++++| ......+ .....+++|+.|+++++.. ....-..+. .+++|++|.+.++. ++ .+-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 344556666666552 2111111 1123345666666666552 222222222 25566666655444 33 2222
Q ss_pred cCCCCCCCCEEeccCCCCC
Q 004022 277 SFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 277 ~l~~l~~L~~L~L~~~~~~ 295 (779)
....+++|++|++++|...
T Consensus 290 i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhcCcccEEeeecCccc
Confidence 2445666777777666544
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.00059 Score=67.48 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=64.8
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC--hhccCCCCCCEE
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFI 405 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L 405 (779)
+.+.+.|+..||.+...-- ...++.|+.|.|+-|.++.+. .+..++.|++|+|..|.|.++. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4556778888887655321 347888899999988888753 3567888999999999888776 347888999998
Q ss_pred EcCCCCCCCcCCC
Q 004022 406 HLEDFNMLQSLPE 418 (779)
Q Consensus 406 ~Ls~n~~~~~~~~ 418 (779)
.|..|+-.+.-+.
T Consensus 94 WL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 94 WLDENPCCGEAGQ 106 (388)
T ss_pred hhccCCcccccch
Confidence 8888877665543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.065 Score=48.36 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=50.9
Q ss_pred cChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCc
Q 004022 39 LDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLV 116 (779)
Q Consensus 39 l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~ 116 (779)
+...+|.++++|+.+.+.. .+ ..+++..+....+|+.+.+.++ +..++.. | .+.+|+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~-------------------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~ 61 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TI-------------------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLE 61 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T---------------------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-E
T ss_pred ECHHHHhCCCCCCEEEECC-Ce-------------------eEeChhhccccccccccccccc-ccccceeeeecccccc
Confidence 5567788888888888763 23 2455544444357777777764 6666654 3 566777
Q ss_pred EEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecC
Q 004022 117 ELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSY 176 (779)
Q Consensus 117 ~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~ 176 (779)
.+.+.. .+..+ -...|..+++|+.+++..+ ...++. +.+. +|+.+.+..
T Consensus 62 ~i~~~~-~~~~i-------~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 62 SITFPN-NLKSI-------GDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETS-TT-EE--------TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccc-ccccc-------ccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777765 44433 2234556777777777553 222222 3334 666665543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.0054 Score=69.50 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=95.0
Q ss_pred CCCCCccEEeeeCCCCCc-ccccccC-CCCCCcEEecccccC-Cc-ccchhhhcCccCcEeecCCcCCC---cCCccCCC
Q 004022 208 ECLTDLEVLDLRGCKRLK-RISTSFC-KLRSLVTLILLGCLN-LE-HFPEILEKMEHLKRIYSDRTPIT---ELPSSFEN 280 (779)
Q Consensus 208 ~~l~~L~~L~L~~~~~~~-~lp~~l~-~l~~L~~L~L~~~~~-~~-~~p~~l~~l~~L~~L~L~~n~i~---~lp~~l~~ 280 (779)
..+.+|+.|+++++.... ..-..+. .+++|++|.+.+|.. .. .+-.....+++|++|+++++... .+.....+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 345677777777776322 1111122 266777777777763 22 23344556677888887765543 12222334
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccC---CcCCccccCccccCeeeccCCCCCCccChhhccCCCCC
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAI---SQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAM 356 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~---~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 356 (779)
+++|+.|.+..+.. +..++. .+.++... .........+++++.+.+..+..........+.+++.|
T Consensus 320 c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 320 CPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred CcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 55555554433221 333333 22222221 11223345677788888877773222212334455555
Q ss_pred cEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC--hhccC-CCCCCEEEcCCCCCCC
Q 004022 357 GLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP--AIIKQ-MSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 357 ~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~-l~~L~~L~Ls~n~~~~ 414 (779)
+ ..+..+ ......++.|+++.+...+.. ..... +..++.+++.++....
T Consensus 390 ~-~~l~~~--------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 390 T-ESLELR--------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred c-hHHHHH--------hccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 2 222111 112223788888887654322 11222 6777888888876654
|
|
| >PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.025 Score=32.25 Aligned_cols=20 Identities=65% Similarity=0.994 Sum_probs=18.1
Q ss_pred CCcEEECCCCCCCCccCCCC
Q 004022 114 NLVELNLRCSKVEQPWEGEK 133 (779)
Q Consensus 114 ~L~~L~L~~n~i~~l~~g~~ 133 (779)
+|++|+|.+++++.+|+|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999973
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model. |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.017 Score=34.25 Aligned_cols=19 Identities=53% Similarity=0.761 Sum_probs=10.6
Q ss_pred ccEEEEecCCCccCChhcc
Q 004022 379 LEILYLSGNNFESLPAIIK 397 (779)
Q Consensus 379 L~~L~Ls~n~l~~lp~~l~ 397 (779)
|++|+|++|+++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5556666665555554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.0022 Score=63.62 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=18.6
Q ss_pred ccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcc
Q 004022 190 VTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKR 226 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~ 226 (779)
|+.|+|..|.|..+.+ .+.++++|+.|.|..|.-.+.
T Consensus 65 LkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 65 LKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 3333333344444433 345666666666666654443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.21 Score=44.92 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=40.6
Q ss_pred cccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc-C
Q 004022 201 EEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-F 278 (779)
Q Consensus 201 ~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l 278 (779)
..++. .+..+++|+.+.+..+ ....-...+.++++|+.+.+.. .....-...+..+++|+.+.+..+ +..++.. +
T Consensus 24 ~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f 100 (129)
T PF13306_consen 24 KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSF 100 (129)
T ss_dssp -EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhh
Confidence 44443 4555667777777653 2332233466666777777754 222223345566777777777654 5555443 5
Q ss_pred CCCCCCCEEeccC
Q 004022 279 ENLPGLEVLFVED 291 (779)
Q Consensus 279 ~~l~~L~~L~L~~ 291 (779)
.+. +|+.+.+..
T Consensus 101 ~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 101 SNC-NLKEINIPS 112 (129)
T ss_dssp TT--T--EEE-TT
T ss_pred cCC-CceEEEECC
Confidence 555 777776654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.072 Score=31.49 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=8.5
Q ss_pred ccEEEecCcCCcccCcccC
Q 004022 190 VTRLYLGQSAIEEVPSSIE 208 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~~l~ 208 (779)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 3444444444455554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.083 Score=29.02 Aligned_cols=16 Identities=50% Similarity=0.673 Sum_probs=6.1
Q ss_pred CccEEEEecCCCccCC
Q 004022 378 SLEILYLSGNNFESLP 393 (779)
Q Consensus 378 ~L~~L~Ls~n~l~~lp 393 (779)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554443
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.1 Score=28.69 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=7.5
Q ss_pred CceEEEccCCCCCCCC
Q 004022 92 KLRYLHWDTYPLRTLP 107 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp 107 (779)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.0055 Score=59.24 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=74.0
Q ss_pred cChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcE
Q 004022 39 LDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVE 117 (779)
Q Consensus 39 l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~ 117 (779)
++-..+....+.+.||++.|++ +.+-..+..+ ..|..|+++.|.+..+|.++ ..+.++.
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~-------------------vn~~~n~s~~-t~~~rl~~sknq~~~~~~d~~q~~e~~~ 92 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRL-------------------VNLGKNFSIL-TRLVRLDLSKNQIKFLPKDAKQQRETVN 92 (326)
T ss_pred cchhhhhccceeeeehhhhhHH-------------------HhhccchHHH-HHHHHHhccHhhHhhChhhHHHHHHHHH
Confidence 4455677788889999988876 3444555555 58888999999999999998 7888899
Q ss_pred EECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 118 LNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 118 L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
+++..|+.++ .|.+++.+++++++++.++.+..
T Consensus 93 ~~~~~n~~~~--------~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 93 AASHKNNHSQ--------QPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred HHhhccchhh--------CCccccccCCcchhhhccCcchH
Confidence 9999998888 78889999999999998887543
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.41 E-value=0.019 Score=64.02 Aligned_cols=188 Identities=20% Similarity=0.148 Sum_probs=97.7
Q ss_pred CccEEeeeCCCCCcc----cccccCCCCCCcEEecccccCCcccc----hhhhcC-ccCcEeecCCcCCCc-----CCcc
Q 004022 212 DLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLEHFP----EILEKM-EHLKRIYSDRTPITE-----LPSS 277 (779)
Q Consensus 212 ~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~~p----~~l~~l-~~L~~L~L~~n~i~~-----lp~~ 277 (779)
.+..|.+.+|.+... +...+.....|+.|++++|.+...-- +.+... ..|++|++..+.++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 366777777765433 22334556777777777766552211 112221 345555555555542 2333
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccCh---hhccCCC
Q 004022 278 FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPR---TFLLGLS 354 (779)
Q Consensus 278 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~ 354 (779)
+.....++.++++.|.+...- .+.. ...++..+....++++|++++|.++..... ..+...+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g--------~~~l-------~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~ 232 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELG--------LLVL-------SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE 232 (478)
T ss_pred HhcccchhHHHHHhcccchhh--------hHHH-------hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence 444556666666665443100 0000 001111233456677777777776533111 1123333
Q ss_pred C-CcEEEecCCCCcc-----CCcccCCC-CCccEEEEecCCCc-----cCChhccCCCCCCEEEcCCCCCCC
Q 004022 355 A-MGLLHISDYAVRE-----IPQEIAYL-SSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 355 ~-L~~L~Ls~~~l~~-----~p~~l~~l-~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
. +..|++..|.+.+ +...+..+ ..++.++++.|.++ .+...+..+++++.+.+++|++..
T Consensus 233 ~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 233 SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4 5557777776664 22334444 56777777777776 344556667777777777776643
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=84.20 E-value=0.73 Score=28.33 Aligned_cols=20 Identities=45% Similarity=0.519 Sum_probs=14.6
Q ss_pred CCCccEEEEecCCCccCChh
Q 004022 376 LSSLEILYLSGNNFESLPAI 395 (779)
Q Consensus 376 l~~L~~L~Ls~n~l~~lp~~ 395 (779)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677888888888877754
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=84.20 E-value=0.73 Score=28.33 Aligned_cols=20 Identities=45% Similarity=0.519 Sum_probs=14.6
Q ss_pred CCCccEEEEecCCCccCChh
Q 004022 376 LSSLEILYLSGNNFESLPAI 395 (779)
Q Consensus 376 l~~L~~L~Ls~n~l~~lp~~ 395 (779)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677888888888877754
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.78 E-value=0.043 Score=53.30 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=72.1
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
.||++.++...+. ..|+.++.|..|+++.|.+ ..+|+++..+ ..++.++++.|..+..|
T Consensus 46 vld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~-------------------~~~~~d~~q~-~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 46 VLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQI-------------------KFLPKDAKQQ-RETVNAASHKNNHSQQP 104 (326)
T ss_pred eehhhhhHHHhhc-cchHHHHHHHHHhccHhhH-------------------hhChhhHHHH-HHHHHHHhhccchhhCC
Confidence 4778888766665 4688999999999999988 4788888888 69999999999999999
Q ss_pred CCC-CCCCCcEEECCCCCCCCccCCC
Q 004022 108 SNF-KPKNLVELNLRCSKVEQPWEGE 132 (779)
Q Consensus 108 ~~~-~l~~L~~L~L~~n~i~~l~~g~ 132 (779)
.++ ..++++++++..|.+..-|.|.
T Consensus 105 ~s~~k~~~~k~~e~k~~~~~~~~~~~ 130 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEFFRKLFGF 130 (326)
T ss_pred ccccccCCcchhhhccCcchHHHHhH
Confidence 999 8999999999999988777665
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.57 E-value=0.015 Score=64.75 Aligned_cols=170 Identities=26% Similarity=0.307 Sum_probs=100.6
Q ss_pred ccCcccCCCCCccEEeeeCCCCCcc----cccccCCC-CCCcEEecccccCCcc----cchhhhcCccCcEeecCCcCCC
Q 004022 202 EVPSSIECLTDLEVLDLRGCKRLKR----ISTSFCKL-RSLVTLILLGCLNLEH----FPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 202 ~lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l-~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
.+...+.....|..|++++|.+... +-..+... ..|++|.+..|..... +.+.+.....++.++++.|.+.
T Consensus 106 ~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 106 ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 4445566677788888888775421 11122222 5667777777776543 4556666788888888888875
Q ss_pred c-----CCccCC----CCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc-cCeeeccCCCCC
Q 004022 273 E-----LPSSFE----NLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM-LRSLDSSHCKGL 342 (779)
Q Consensus 273 ~-----lp~~l~----~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~-L~~L~l~~n~~~ 342 (779)
. ++..+. ...++++|.+.+|..... .+. .+...+...+. +..|++..|.+.
T Consensus 186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~------~c~-------------~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 186 ELGLLVLSQALESAASPLSSLETLKLSRCGVTSS------SCA-------------LLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH------HHH-------------HHHHHHhccchhhHHHHHHhcCcc
Confidence 1 222233 466777787777765421 011 11111222333 555677766655
Q ss_pred CccCh---hhccCC-CCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCc
Q 004022 343 ESFPR---TFLLGL-SAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 343 ~~~~~---~~~~~l-~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
..... ..+..+ ..++.++++.|.+++ +...+..++.+++|.++.|.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 43111 112333 567888888888776 4455667778999999998776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 779 | ||||
| 3cvr_A | 571 | Crystal Structure Of The Full Length Ipah3 Length = | 9e-09 | ||
| 1g9u_A | 454 | Crystal Structure Of Yopm-leucine Rich Effector Pro | 2e-06 | ||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 6e-06 | ||
| 3g06_A | 622 | The Salmonella Virulence Effector Ssph2 Functions A | 1e-04 |
| >pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3 Length = 571 | Back alignment and structure |
|
| >pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454 | Back alignment and structure |
|
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
| >pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 4e-42
Identities = 70/359 (19%), Positives = 120/359 (33%), Gaps = 58/359 (16%)
Query: 139 SIQNFKYLSALSFKGCQSLRSFPSNLH-FVCPVTINFSYCVNLIEFPQISGKVTRLYLGQ 197
+ L F+G +LR + L + + + + +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQIETRTG 65
Query: 198 SAIEEVPSSIECLTD--LEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEIL 255
A++ +E T L+LR L + +L L + + L P+ +
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTM 123
Query: 256 EKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAA 315
++ L+ + R P+ LP+S +L L L + C +L LP+ + S +
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS------- 176
Query: 316 SAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAY 375
L + L+SL +R +P IA
Sbjct: 177 GEHQGLVN-------LQSLRLEWTG-------------------------IRSLPASIAN 204
Query: 376 LSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDC 431
L +L+ L + + +L I + +L + L L++ P LK L L DC
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDC 263
Query: 432 KMLQSLPV----LPFCLESLDLTGCNMLRSLPELP---LCLQYLNLEDCNMLRSLPELP 483
L +LP+ L LE LDL GC L LP L + + + P
Sbjct: 264 SNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 51/313 (16%), Positives = 95/313 (30%), Gaps = 50/313 (15%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQ-LPNGLD 87
L + + + + E + ++ + L+
Sbjct: 17 LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76
Query: 88 YLP-KKLRYLHWDTYPLRTLPSN-FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKY 145
L + PL P F+ +L + + + + + +P ++Q F
Sbjct: 77 DATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME--------LPDTMQQFAG 128
Query: 146 LSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVNLIEFPQISGKV-------------- 190
L L+ LR+ P+++ ++ C L E P+
Sbjct: 129 LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 191 ---------------------TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIST 229
L + S + + +I L LE LDLRGC L+
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 230 SFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY-SDRTPITELPSSFENLPGLEVLF 288
F L LIL C NL P + ++ L+++ ++ LPS LP ++
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307
Query: 289 VEDCSKLDNLPDN 301
V L +
Sbjct: 308 VPPHL-QAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 47/217 (21%), Positives = 82/217 (37%), Gaps = 40/217 (18%)
Query: 41 PRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDT 100
P + +++ LR + + E+ +LP + L L+ L +
Sbjct: 143 PASIASLNRLR--ELSIRACPELTELPE-------PLASTDASGEHQGL-VNLQSLRLEW 192
Query: 101 YPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS 159
+R+LP++ +NL L +R S + + +I + L L +GC +LR+
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSA--------LGPAIHHLPKLEELDLRGCTALRN 244
Query: 160 FPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYL-GQSAIEEVPSSIECLTDLEVLDL 218
+P F L RL L S + +P I LT LE LDL
Sbjct: 245 YPPI----------FGGRAPL----------KRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 219 RGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEIL 255
RGC L R+ + +L + +++ L +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 27/193 (13%)
Query: 370 PQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELP-LCLKYLHL 428
+ S E LY G+ +L +SQ + + D N S +
Sbjct: 5 HHHHHHSSGRENLYFQGST--ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET 62
Query: 429 IDCKMLQSLPVLPF-----CLESLDLTGCNMLRSLPE----LPLCLQYLNLEDCNMLRSL 479
+ L++ L +L+L L P+ L LQ++ + D L L
Sbjct: 63 RTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLS-HLQHMTI-DAAGLMEL 119
Query: 480 PELPLCLQLLTVRN--CNRLQSLP-EI--LLCLQELDASVLEKLSKHSPDLQWAPESLKS 534
P+ L N L++LP I L L+EL +L++ PE L S
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE-------LPEPLAS 172
Query: 535 AAICFEFTNCLKL 547
E + L
Sbjct: 173 TDASGEHQGLVNL 185
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-37
Identities = 108/479 (22%), Positives = 187/479 (39%), Gaps = 60/479 (12%)
Query: 41 PRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDT 100
P N+ + + + E E+ EQ + +L D L ++ L +
Sbjct: 27 PVEAENVKSKTEYYNA---WSEWERNAPPGNGEQREMAVSRLR---DCLDRQAHELELNN 80
Query: 101 YPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSF 160
L +LP P +L L C+ + + +P Q+ K L + L
Sbjct: 81 LGLSSLPEL--PPHLESLVASCNSLTE--------LPELPQSLKSLLVDNNNLKA-LSDL 129
Query: 161 PSNLHFVCPVTINFSYCVNLIEFPQISG--KVTRLYLGQSAIEEVPSSIECLTDLEVLDL 218
P L + S L + P++ + + + ++++++P LE +
Sbjct: 130 PPLL-----EYLGVSNN-QLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAA 180
Query: 219 RGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSF 278
+ L+ + L L + +L+ P++ L+ I + + ELP
Sbjct: 181 GNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDLPLS---LESIVAGNNILEELPE-L 233
Query: 279 ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSH 338
+NLP L ++ D + L LPD SLE L + + +LP S L LD S
Sbjct: 234 QNLPFLTTIYA-DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQS------LTFLDVSE 286
Query: 339 CKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQ 398
+ L+ S +R + SLE L +S N LPA+ +
Sbjct: 287 NI-FSGLSEL----PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPALPPR 338
Query: 399 MSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSL 458
+ +L FN L +PELP LK LH+ L+ P +P +E L + + L +
Sbjct: 339 LERLIA----SFNHLAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRM--NSHLAEV 391
Query: 459 PELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLC-LQELDASVLE 516
PELP L+ L++ + N LR P++P ++ L + N R+ E +L+ V E
Sbjct: 392 PELPQNLKQLHV-ETNPLREFPDIPESVEDLRM-NSERVVDPYEFAHETTDKLEDDVFE 448
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 7e-36
Identities = 99/421 (23%), Positives = 168/421 (39%), Gaps = 54/421 (12%)
Query: 107 PSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLH- 165
P N L E S + + +P +N K + + R+ P
Sbjct: 5 PRNVSNTFLQEPLRHSSNLTE--------MPVEAENVKSKTEYYNAWSEWERNAPPGNGE 56
Query: 166 ---------FVCPVT----INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTD 212
C + + L P++ + L +++ E+P + L
Sbjct: 57 QREMAVSRLRDCLDRQAHELELNNL-GLSSLPELPPHLESLVASCNSLTELPELPQSLKS 115
Query: 213 LEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT 272
L V + LK +S L L + LE PE+ + LK I D +
Sbjct: 116 LLVDNN----NLKALSDLPPLLEYL----GVSNNQLEKLPEL-QNSSFLKIIDVDNNSLK 166
Query: 273 ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLR 332
+LP P LE + + +L+ LP+ + +L +L I A +++ +LP + L
Sbjct: 167 KLPDL---PPSLEFIAAGNN-QLEELPE-LQNLPFLTAIYADNNSLKKLPDL--PLS-LE 218
Query: 333 SLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESL 392
S+ + + LE P L L + ++ + ++ +P SLE L + N L
Sbjct: 219 SIVAGNNI-LEELP--ELQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNYLTDL 272
Query: 393 PAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGC 452
P + + ++ L N+ L ELP L YL+ + ++SL LP LE L+++
Sbjct: 273 PELPQSLTFLDVSE----NIFSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSN- 326
Query: 453 NMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDA 512
N L LP LP L+ L N L +PELP L+ L V N L+ P+I +++L
Sbjct: 327 NKLIELPALPPRLERLIA-SFNHLAEVPELPQNLKQLHVEY-NPLREFPDIPESVEDLRM 384
Query: 513 S 513
+
Sbjct: 385 N 385
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 3e-25
Identities = 73/275 (26%), Positives = 112/275 (40%), Gaps = 34/275 (12%)
Query: 260 HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS 319
L+ + +TE+P EN+ + N P G + A+S
Sbjct: 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM--------AVS 63
Query: 320 QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSL 379
+L L L+ ++ GL S P + L S ++ E+P+ L SL
Sbjct: 64 RLRDC--LDRQAHELELNNL-GLSSLPEL----PPHLESLVASCNSLTELPELPQSLKSL 116
Query: 380 EILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC--LKYLHLIDCKMLQSL 437
+ + LP L ++ + N L+ LPEL LK + + + L+ L
Sbjct: 117 LVDNNNLKALSDLP------PLLEYLGV-SNNQLEKLPELQNSSFLKIIDVDNNS-LKKL 168
Query: 438 PVLPFCLESLDLTGCNMLRSLPELPLC--LQYLNLEDCNMLRSLPELPLCLQLLTVRNCN 495
P LP LE + G N L LPEL L + D N L+ LP+LPL L+ + N N
Sbjct: 169 PDLPPSLEFIAA-GNNQLEELPELQNLPFLTAIYA-DNNSLKKLPDLPLSLESIVAGN-N 225
Query: 496 RLQSLPEI--LLCLQELDAS--VLEKLSKHSPDLQ 526
L+ LPE+ L L + A +L+ L P L+
Sbjct: 226 ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLE 260
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 369 IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE---------- 418
I + L+ +N +P + + + ++ P
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 419 ------LPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLED 472
L L L + L SLP LP LESL CN L LPELP L+ L +++
Sbjct: 63 SRLRDCLDRQAHELELNNLG-LSSLPELPPHLESLVA-SCNSLTELPELPQSLKSLLVDN 120
Query: 473 CNMLRSLPELPLCLQLLTVRNCNRLQSLPEI--LLCLQELDAS 513
N L++L +LP L+ L V N N+L+ LPE+ L+ +D
Sbjct: 121 -NNLKALSDLPPLLEYLGVSN-NQLEKLPELQNSSFLKIIDVD 161
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 32/136 (23%), Positives = 44/136 (32%), Gaps = 23/136 (16%)
Query: 412 MLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESL---DLTGCNMLRSLPE-------- 460
M + + L L +PV ++S R+ P
Sbjct: 1 MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 461 --------LPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDA 512
L L L + L SLPELP L+ L +CN L LPE+ L+ L
Sbjct: 61 AVSRLRDCLDRQAHELELNNLG-LSSLPELPPHLESLVA-SCNSLTELPELPQSLKSLLV 118
Query: 513 SVLE--KLSKHSPDLQ 526
LS P L+
Sbjct: 119 DNNNLKALSDLPPLLE 134
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-31
Identities = 85/538 (15%), Positives = 168/538 (31%), Gaps = 83/538 (15%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFY------VPKFYEIEKLPSMSTEEQLSYSKVQL 82
L L+ P A ++ L++ F + + E+L +EE+ ++
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387
Query: 83 PNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQN 142
++L + P K ++L+ +++ + +IQ
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN-LTNRITFISKAIQR 446
Query: 143 FKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202
L + F + + + E
Sbjct: 447 LTKLQIIYFANSP-FTYDN----------------------IAVDWEDANSDYAKQ-YEN 482
Query: 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLIL---------LGCLNLEHFPE 253
S L DL ++L C + ++ L L +L + + +
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542
Query: 254 ILEKMEHLKRIYSDRTPITELPSS--FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYI 311
+ ++ Y + E P+S + + L +L K+ +L G+ L +
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEA-FGTNVKLTDL 600
Query: 312 LAAASAISQLPSSV-ALSNMLRSLDSSHCKGLESFPRTFLLG-LSAMGLLHISDYAVREI 369
+ I ++P A ++ + L SH K L+ P F + MG + S +
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659
Query: 370 PQEI------AYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLC 422
+ I + + LS N + P + S + I L + N++ S+PE L
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN-NLMTSIPENSLK 718
Query: 423 LKYLHLIDCKMLQSL-----------PVLPFC----LESLDLTGCNMLRSLPELPLCLQY 467
K + + +L ++ L ++D++ N S P PL
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQ 777
Query: 468 L---------NLEDCNMLRSLPELPLCLQLLTVRN--CNRLQSLPEILLC-LQELDAS 513
L + E +LR P L N ++ + E L L LD +
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIA 835
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-24
Identities = 82/557 (14%), Positives = 165/557 (29%), Gaps = 102/557 (18%)
Query: 7 RLTHSLFLFFFYKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKL 66
T S LF + T + ++ + ++ L + + + E++ +
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417
Query: 67 PSMSTEEQLSYSKVQLPNGLDYLP------KKLRYLHWDTYPLRTLPSNFKPKNLVELNL 120
S L N + ++ KL+ +++ P ++
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477
Query: 121 RCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP--VTINFSYCV 178
+ + E S N K L+ + C ++ P L + P ++N +
Sbjct: 478 KQYENE----------ELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACN- 525
Query: 179 NLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRI--STSFCKLRS 236
I Q+ TRL + +++ + L+ S S K+
Sbjct: 526 RGISAAQLKADWTRL----------ADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVK 574
Query: 237 LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295
L L + + H L + D I E+P +E L KL
Sbjct: 575 LGLLDCVHN-KVRHLEAF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KL 631
Query: 296 DNLPD--NIGSLEYLYYILAAASAISQLPSSVALSNM------LRSLDSSHCKGLESFPR 347
+P+ N S+ + + + + I +++ S ++ S+ + ++ FP
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPT 690
Query: 348 TFLLGLSAMGLLHISDYAVREIPQEIAY-------------------------------- 375
S + + +S+ + IP+
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750
Query: 376 -LSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKML 434
L L + +S N F S P SQL+ + ++L
Sbjct: 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI---------------RHQRDAEGNRIL 795
Query: 435 QSLPVLPFC----LESLDLTGCNMLRSLPELPLC-LQYLNLEDCNMLRSLPELPLCLQLL 489
+ P L L + G N +R + E L L++ D N S+ +C +
Sbjct: 796 RQWPTG-ITTCPSLIQLQI-GSNDIRKVDEKLTPQLYILDIAD-NPNISIDVTSVCPYIE 852
Query: 490 TVRNCNRLQSLPEILLC 506
+I C
Sbjct: 853 AGMYVLLYDKTQDIRGC 869
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 2e-21
Identities = 45/327 (13%), Positives = 93/327 (28%), Gaps = 36/327 (11%)
Query: 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLIL-----LGCLNLEHFPEILEKMEH 260
++ + L L G R+ + +L L L L E+ M
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 261 LK--RIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAI 318
+ RI + NL L + ++ + + I + I
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 319 SQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSS 378
+ + ++ L+ + ++ + + + L
Sbjct: 438 TFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYE----NEELSWSNLKD 492
Query: 379 LEILYLSGNNF-ESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSL 437
L + L LP + + +L+ +++ N S +L L +
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNI-ACNRGISAAQLKADWTRLA----DDEDTG 547
Query: 438 PVLPFCLESLDLTGCNMLRSLP-ELPLC----LQYLNLEDCNMLRSLPELPLC--LQLLT 490
P ++ + N L P L L L+ N +R L L L
Sbjct: 548 P----KIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVH-NKVRHLEAFGTNVKLTDLK 601
Query: 491 VRNCNRLQSLPEILLC----LQELDAS 513
+ N+++ +PE ++ L S
Sbjct: 602 LDY-NQIEEIPEDFCAFTDQVEGLGFS 627
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 2e-20
Identities = 67/472 (14%), Positives = 137/472 (29%), Gaps = 96/472 (20%)
Query: 24 IEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLP 83
++ + K + +++N+ +L + L
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVE--------------------LYNC----- 501
Query: 84 NGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKAC--VPSSIQ 141
+ LP L L L LN+ C++ + + +
Sbjct: 502 PNMTQLPDFLYDL----------------PELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 142 NFKYLSALSFKGCQSLRSFPSNLHFV-CP--VTINFSYCVNLIEFPQISG--KVTRLYLG 196
+ L FP++ ++ + + K+T L L
Sbjct: 546 TGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLD 603
Query: 197 QSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRI--STSFCKLRSLVTLIL----LGCLNLE 249
+ IEE+P +E L K LK I + + + ++ +G
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662
Query: 250 HFPEI-LEKMEHLKRIYSDRTPITELP-SSFENLPGLEVLFVEDCSKLDNLPDN------ 301
+ K + + I + P F + + + + + ++P+N
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKD 721
Query: 302 --IGSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTF--LLGLSA 355
+ L I + ++ L + + L ++D S+ SFP L A
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKA 780
Query: 356 MGLLHISDYA----VREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFN 411
G+ H D +R+ P I SL L + N+ + + QL + + D N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIAD-N 837
Query: 412 MLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPL 463
S+ +C P + + L +R L +
Sbjct: 838 PNISIDVTSVC---------------PYIEAGMYVLLYDKTQDIRGCDALGI 874
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 8e-12
Identities = 42/273 (15%), Positives = 89/273 (32%), Gaps = 39/273 (14%)
Query: 274 LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRS 333
+N + L + +PD IG L L + + + +
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374
Query: 334 L-DSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYL-------S 385
+ + + + + FL + L + A+ P E+ + + L
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNL 433
Query: 386 GNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFC-- 443
N + I+++++L+ I+ + + + + + K ++ +
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFAN-SPFTYDNI-AVDWEDANSDYAKQYENEELSWSNLK 491
Query: 444 -LESLDLTGCNMLRSLPE----LPLCLQYLNLEDCNMLRSLPELPL-------------C 485
L ++L C + LP+ LP LQ LN+ CN S +L
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLP-ELQSLNI-ACNRGISAAQLKADWTRLADDEDTGPK 549
Query: 486 LQLLTVRNCNRLQSLPEI-----LLCLQELDAS 513
+Q+ + N L+ P ++ L LD
Sbjct: 550 IQIFYMGY-NNLEEFPASASLQKMVKLGLLDCV 581
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-26
Identities = 64/444 (14%), Positives = 131/444 (29%), Gaps = 70/444 (15%)
Query: 113 KNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS---NLHFVCP 169
L L L + P I ++F F
Sbjct: 105 TELEVLALGSHGEKVNERLF---GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161
Query: 170 VTINFSYCVNLIEFPQISG---KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKR 226
+ + + S K T++ + I V ++ LT L + +
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAE 221
Query: 227 ISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY-SDRTPITELPSSFENLPGLE 285
+ + +L+ + ++ L + + +T+LP+ + LP ++
Sbjct: 222 NICEAWENENSEYAQQYKTEDLK-----WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276
Query: 286 VLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESF 345
++ V + + Q + + ++ + + L++F
Sbjct: 277 LINVACN-RGISGEQLKDDW--------------QALADAPVGEKIQIIYIGYNN-LKTF 320
Query: 346 PRTFLLG-LSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLR 403
P L + +G+L + L L L+ N +PA Q+
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380
Query: 404 FIHLEDFNMLQSLPELPLC-----LKYLHL-------IDCKMLQSLPVLPFC---LESLD 448
+ N L+ +P + + + +D K L PF + S++
Sbjct: 381 NLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 449 LTGCNMLRSLPELPLC----LQYLNLEDCNMLRSLPELPLCLQLLTVRNC---------- 494
L N + P+ L +NL NML +P+ L + +N
Sbjct: 440 L-SNNQISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497
Query: 495 NRLQSLP-EILLC----LQELDAS 513
N+L L + L +D S
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLS 521
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 8e-22
Identities = 74/512 (14%), Positives = 156/512 (30%), Gaps = 89/512 (17%)
Query: 27 IFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL---P 83
+ + + ++ + S+ +++ Q+
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192
Query: 84 NGLDYLPK------KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVP 137
N + ++ K KLR + P +N + K
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----------ED 242
Query: 138 SSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP--VTINFSYCVNLIEFPQISG------- 188
N K L+ + C +L P+ L P IN + I Q+
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACN-RGISGEQLKDDWQALAD 300
Query: 189 -----KVTRLYLGQSAIEEV--PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLI 241
K+ +Y+G + ++ +S++ + L +L+ + L+ +F L +L
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLN 359
Query: 242 LLGCLNLEHFP-EILEKMEHLKRIYSDRTPITELPSSFE--NLPGLEVLFVE-------D 291
L + P E ++ + + +P+ F+ ++ + + D
Sbjct: 360 LAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418
Query: 292 CSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTF 349
D L + I + + IS+ P + S L S++ L P+
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FSTGSPLSSINLMGNM-LTEIPKNS 476
Query: 350 LLG-------LSAMGLLHISDYAVREIPQEIAY--LSSLEILYLSGNNFESLPAIIKQMS 400
L + + + + ++ + L L + LS N+F P S
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536
Query: 401 QLRFIHLEDF------NMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNM 454
L+ + + L+ PE + C L L + G N
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPE--------GITLCPSLT----------QLQI-GSND 577
Query: 455 LRSLPELPL-CLQYLNLEDCNMLRSLPELPLC 485
+R + E + L+++D N S+ +C
Sbjct: 578 IRKVNEKITPNISVLDIKD-NPNISIDLSYVC 608
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-19
Identities = 53/359 (14%), Positives = 111/359 (30%), Gaps = 60/359 (16%)
Query: 187 SGKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCK-LRSLVTLILLG 244
+G+VT L L VP +I LT+LEVL L K + + ++
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 245 CLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGS 304
+ + + ++ E+ L + + ++ +
Sbjct: 140 KMRMHYQKTFVDYD------------------PREDFSDLIKDCINSDPQQKSIKKSSRI 181
Query: 305 LEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY 364
I ++ I+ + +V LR + +
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY-- 238
Query: 365 AVREIPQEIAYLSSLEILYLSGNNF-ESLPAIIKQMSQLRFIHLEDFNMLQSLPELPL-- 421
+ + L L + + LP +K + +++ I++ N S +L
Sbjct: 239 --KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV-ACNRGISGEQLKDDW 295
Query: 422 ----------CLKYLHLIDCKMLQSLPVLPF-----CLESLDLTGCNMLRSLPELPLC-- 464
++ +++ L++ PV L L+ + LP
Sbjct: 296 QALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354
Query: 465 LQYLNLEDCNMLRSLPELPLC-----LQLLTVRNCNRLQSLPEILLC-----LQELDAS 513
L LNL N + +P C ++ L+ + N+L+ +P I + +D S
Sbjct: 355 LASLNLAY-NQITEIPA-NFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFS 410
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 7e-25
Identities = 61/183 (33%), Positives = 89/183 (48%), Gaps = 10/183 (5%)
Query: 333 SLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI--AYLSSLEILYLSGNNFE 390
S +S + + + + E + ++ L L+ N
Sbjct: 14 SQNSFYNT-ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72
Query: 391 SLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLT 450
SLP + Q+ + + N L SLPELP L+YL D + L +LP LP L+ LD+
Sbjct: 73 SLPDNLPP--QITVLEITQ-NALISLPELPASLEYLDACDNR-LSTLPELPASLKHLDVD 128
Query: 451 GCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQEL 510
N L LPELP L+Y+N ++ N L LPELP L++L+VRN N+L LPE+ L+ L
Sbjct: 129 N-NQLTMLPELPALLEYINADN-NQLTMLPELPTSLEVLSVRN-NQLTFLPELPESLEAL 185
Query: 511 DAS 513
D S
Sbjct: 186 DVS 188
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 1e-19
Identities = 61/371 (16%), Positives = 117/371 (31%), Gaps = 49/371 (13%)
Query: 248 LEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIG-SLE 306
+ +K E +R L + L + L +LPDN+ +
Sbjct: 26 YADYFSAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRL-NLSSLPDNLPPQIT 83
Query: 307 YLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366
L +A+ LP ++ L LD+ + L + P +++ L + + +
Sbjct: 84 VLE---ITQNALISLPEL--PAS-LEYLDACDNR-LSTLPEL----PASLKHLDVDNNQL 132
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYL 426
+P+ + LE + N LP + L + + + N L LPELP L+ L
Sbjct: 133 TMLPELP---ALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPELPESLEAL 185
Query: 427 HLIDCKMLQSLPVLPFCLESLDLTGC------NMLRSLPE----LPLCLQYLNLEDCNML 476
+ L+SLP +P + T N + +PE L + LED N L
Sbjct: 186 DVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD-PTCTIILED-NPL 242
Query: 477 RSLPELPLCLQLLTVRNCNRLQSLPEILLC-------LQELDASVLEKLSKHSPDLQWAP 529
S L Q L + + + + W
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302
Query: 530 ESLKSAAICFEFTNCLKLNGKANNKILADSLLRIRHMAIASLRLGYEMAINEKLSELRGS 589
+ A F +L+ + + + ++ ++ + +L + +
Sbjct: 303 FEHEEHANTF-SAFLDRLSDTVSARNTSGFREQVAAWLEK-------LSASAELRQQSFA 354
Query: 590 LIVLPGSEIPD 600
+ D
Sbjct: 355 VAADATESCED 365
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 3e-16
Identities = 45/250 (18%), Positives = 77/250 (30%), Gaps = 27/250 (10%)
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
+ + L L + + +P ++ + VL++ L + L L L
Sbjct: 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLPELPASLEYLD----ACDNRL 112
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYL 308
PE+ ++HL D +T LP LE + ++ +L LP+ SLE L
Sbjct: 113 STLPELPASLKHL---DVDNNQLTMLPEL---PALLEYINADNN-QLTMLPELPTSLEVL 165
Query: 309 YYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTF--LLGLSAMGL-LHISDYA 365
+ ++ LP + L +LD S LES P + +
Sbjct: 166 S---VRNNQLTFLPEL--PES-LEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENR 218
Query: 366 VREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKY 425
+ IP+ I L + L N S +
Sbjct: 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA---QPDYHGPRIYFSMSDGQQNT 275
Query: 426 LHLIDCKMLQ 435
LH +
Sbjct: 276 LHRPLADAVT 285
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 2e-10
Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 10/134 (7%)
Query: 382 LYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLP-VL 440
+ L NN SL + + + + F+ + L + + L L
Sbjct: 3 IMLPINNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQAL----PGENRNEAVSLLKECL 57
Query: 441 PFCLESLDLTGCNMLRSLP-ELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQS 499
L L L SLP LP + L + N L SLPELP L+ L + NRL +
Sbjct: 58 INQFSELQL-NRLNLSSLPDNLPPQITVLEITQ-NALISLPELPASLEYLDACD-NRLST 114
Query: 500 LPEILLCLQELDAS 513
LPE+ L+ LD
Sbjct: 115 LPELPASLKHLDVD 128
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 3e-21
Identities = 76/453 (16%), Positives = 161/453 (35%), Gaps = 61/453 (13%)
Query: 62 EIEKLPSMSTEEQLSYSKVQLPN--GLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELN 119
+I +++ + + K + + L ++ L D ++++ NL ++N
Sbjct: 16 QIFTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNLTQIN 74
Query: 120 LRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVN 179
+++ + ++N L + Q + + N
Sbjct: 75 FSNNQLTDI---------TPLKNLTKLVDILMNNNQ-IADIT-----------PLANLTN 113
Query: 180 LIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVT 239
L T L L + I ++ ++ LT+L L+L + IS + L SL
Sbjct: 114 L----------TGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQ 160
Query: 240 LILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLP 299
L N + L + L+R+ ++++ L LE L + ++ ++
Sbjct: 161 LSFG---NQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNN-QISDIT 215
Query: 300 DNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLL 359
+G L L + + + + + +L+N L LD ++ + + + L GL+ + L
Sbjct: 216 -PLGILTNLDELSLNGNQLKDIGTLASLTN-LTDLDLANNQ-ISNLA--PLSGLTKLTEL 270
Query: 360 HISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPEL 419
+ + I +A L++L L L+ N E + I + L ++ L N + + +
Sbjct: 271 KLGANQISNIS-PLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYF-NNISDISPV 327
Query: 420 PLC--LKYLHLIDCKMLQSLPVLPFC--LESLDLTGCNMLRSLPELPLC--LQYLNLEDC 473
L+ L + K + + L + L N + L L + L L D
Sbjct: 328 SSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGH-NQISDLTPLANLTRITQLGLND- 384
Query: 474 NMLRSLPE--LPLCLQLLTVRNCNRLQSLPEIL 504
+ P TV+N P +
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 40/206 (19%), Positives = 83/206 (40%), Gaps = 22/206 (10%)
Query: 318 ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLS 377
I+Q+ + AL+ ++ +T L ++ L ++ I + YL+
Sbjct: 14 INQIFTDTALAE-KMKTVLGKTNVTDTVSQTDLDQVTT---LQADRLGIKSID-GVEYLN 68
Query: 378 SLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC--LKYLHLIDCKMLQ 435
+L + S N + +K +++L I + + N + + L L L L + + +
Sbjct: 69 NLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFNNQ-IT 125
Query: 436 SLPVLPFC--LESLDLTGCNMLRSLPELPLC--LQYLNLEDCNMLRSLPELPLC--LQLL 489
+ L L L+L+ N + + L LQ L+ N + L L L+ L
Sbjct: 126 DIDPLKNLTNLNRLELSS-NTISDISALSGLTSLQQLSFG--NQVTDLKPLANLTTLERL 182
Query: 490 TVRNCNRLQSLPEI--LLCLQELDAS 513
+ + N++ + + L L+ L A+
Sbjct: 183 DISS-NKVSDISVLAKLTNLESLIAT 207
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 1e-20
Identities = 67/370 (18%), Positives = 117/370 (31%), Gaps = 51/370 (13%)
Query: 153 GCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTD 212
G L + P L T+ NL P + ++ L + + + +P L +
Sbjct: 48 GESGLTTLPDCL-PAHITTLVIPDN-NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLE 105
Query: 213 LEVLDLRGCK------RLKRISTSFCKLRSLVTLIL------LGCLNLEHFPEILEKMEH 260
L + L ++ +L SL L + L P + ++
Sbjct: 106 LSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCK 165
Query: 261 LKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQ 320
L ++ +T LP L + L V D +L +LP L L+ A + ++
Sbjct: 166 L---WAYNNQLTSLPMLPSGL---QELSVSDN-QLASLPTLPSELYKLW---AYNNRLTS 215
Query: 321 LPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLE 380
LP+ S L+ L S + L S P S + L +S + +P S L
Sbjct: 216 LPAL--PSG-LKELIVSGNR-LTSLPVL----PSELKELMVSGNRLTSLPMLP---SGLL 264
Query: 381 ILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVL 440
L + N LP + +S ++LE N L + + S P
Sbjct: 265 SLSVYRNQLTRLPESLIHLSSETTVNLEG-NPLSERTLQA----------LREITSAP-- 311
Query: 441 PFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSL 500
S + +M + +L D + E + + +
Sbjct: 312 ---GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAF 368
Query: 501 PEILLCLQEL 510
L L E
Sbjct: 369 SLFLDRLSET 378
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 8e-19
Identities = 53/160 (33%), Positives = 68/160 (42%), Gaps = 23/160 (14%)
Query: 372 EIAYLSSLEILYLSGNNFESLPAII------------------KQMSQLRFIHLEDFNML 413
+ +L + + +LP + +LR + + N L
Sbjct: 35 RACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSG-NQL 93
Query: 414 QSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDC 473
SLP LP L L + L LP LP L L + G N L SLP LP LQ L++ D
Sbjct: 94 TSLPVLPPGLLELSIFSNP-LTHLPALPSGLCKLWIFG-NQLTSLPVLPPGLQELSVSD- 150
Query: 474 NMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDAS 513
N L SLP LP L L N N+L SLP + LQEL S
Sbjct: 151 NQLASLPALPSELCKLWAYN-NQLTSLPMLPSGLQELSVS 189
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 54/332 (16%), Positives = 101/332 (30%), Gaps = 46/332 (13%)
Query: 63 IEKLP-SMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLR 121
+ LP +LS L L LP L L L +LP P L EL++
Sbjct: 93 LTSLPVLPPGLLELSIFSNPL-THLPALPSGLCKLWIFGNQLTSLPVL--PPGLQELSVS 149
Query: 122 CSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLI 181
+++ +P+ L A + + SL PS L ++ S L
Sbjct: 150 DNQLAS--------LPALPSELCKLWAYNNQ-LTSLPMLPSGL-----QELSVSDN-QLA 194
Query: 182 EFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLI 241
P + ++ +L+ + + +P+ L +L V RL + +L+ L+
Sbjct: 195 SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN----RLTSLPVLPSELKELM--- 247
Query: 242 LLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301
+ L P + + L R +T LP S +L + +E L
Sbjct: 248 -VSGNRLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGN-PLSERTLQ 302
Query: 302 IGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHI 361
+ ++ S+ S + D + L +
Sbjct: 303 A---------------LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE 347
Query: 362 SDYAVREIPQEIAYLSSLEILYLSGNNFESLP 393
+ A + + + L +
Sbjct: 348 GEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 2e-20
Identities = 65/367 (17%), Positives = 128/367 (34%), Gaps = 48/367 (13%)
Query: 189 KVTRLYLGQSAIEEVPSS--IECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGC 245
+ L L + + + + LT+L+ L + + I F L SL L +
Sbjct: 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA- 157
Query: 246 LNLEHF-PEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCS---------- 293
L+L ++ + L+ + + + + L + L + L + D +
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217
Query: 294 --------KLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESF 345
K ++ + E +L I +L L L + +
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA-IIKQMSQLR 403
+ + LHI + + + + L ++ + + + +P + + L
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337
Query: 404 FIHLEDFNMLQSLPELPLC-------LKYLHLIDCKMLQSLPVLPFC------LESLDLT 450
F+ L + N++ L+ L L L+S+ L SLD++
Sbjct: 338 FLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDIS 395
Query: 451 GCNMLRSLPE---LPLCLQYLNLEDCNMLRSLP-ELPLCLQLLTVRNCNRLQSLPEILLC 506
N +P+ P +++LNL +R + +P L++L V N N L S L
Sbjct: 396 R-NTFHPMPDSCQWPEKMRFLNLSS-TGIRVVKTCIPQTLEVLDVSN-NNLDSFSLFLPR 452
Query: 507 LQELDAS 513
LQEL S
Sbjct: 453 LQELYIS 459
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 2e-15
Identities = 74/489 (15%), Positives = 153/489 (31%), Gaps = 82/489 (16%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDY 88
LDLS +L F +S+L+ + + L ++
Sbjct: 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138
Query: 89 LP-------KKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSS 139
+ L L LR S K +++ L L S+ E
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI-------F 191
Query: 140 IQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSA 199
+ L + +L F + V V+ L +
Sbjct: 192 ADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRG-----------SVLTDES 239
Query: 200 IEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKME 259
E+ + + +L ++ C + + + L + + +
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL-------- 291
Query: 260 HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS 319
H+ + Y + + L ++ + VE+ SK+ +P +
Sbjct: 292 HIPQFYLFYDL----STVYSLLEKVKRITVEN-SKVFLVPCS---------------FSQ 331
Query: 320 QLPSSVALSNMLRSLDSSHCK--GLESFPRTFLLGLSAMGLLHISD---YAVREIPQEIA 374
L S L LD S ++ L +S ++++ + +
Sbjct: 332 HLKS-------LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 375 YLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP-ELPLCLKYLHLIDCKM 433
L +L L +S N F +P + ++RF++L ++ + +P L+ L + +
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS-TGIRVVKTCIPQTLEVLDVSNNN- 442
Query: 434 LQSLPVLPFCLESLDLTGCNMLRSLPELPLC--LQYLNLEDCNMLRSLPELPLCLQLLTV 491
L S + L+ L ++ N L++LP+ L L + + N L+S+P+
Sbjct: 443 LDSFSLFLPRLQELYISR-NKLKTLPDASLFPVLLVMKISR-NQLKSVPDGIF------- 493
Query: 492 RNCNRLQSL 500
LQ +
Sbjct: 494 DRLTSLQKI 502
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 66/397 (16%), Positives = 134/397 (33%), Gaps = 49/397 (12%)
Query: 28 FLDLSKIKGIN-LDPRAFTNMSNLRLFKFYVPKFYEIEK-----LPSMSTEE----QLSY 77
L + ++ + + F +++L + + + + + ++
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186
Query: 78 SKVQLPNGLDYLPK-KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACV 136
+ L + +LR + + LP + + +L R S + + +
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT---DESFNEL 243
Query: 137 PSSIQNFKYLSALSFKGC--QSLRSFPSNLH--FVCPVTINFSYCVNL----IEFPQIS- 187
++ LS + F C L F + + L
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303
Query: 188 ------GKVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRI----STSFCKLRS 236
KV R+ + S + VP S + L LE LDL + S S
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPS 362
Query: 237 LVTLILLGCL--NLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSK 294
L TL+L +++ EIL +++L + R +P S + + L +
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-G 421
Query: 295 LDNLPDNI-GSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGL 353
+ + I +LE L + + + L L+ L S K L++ P L
Sbjct: 422 IRVVKTCIPQTLEVLD---VSNNNLDSFSLF--LPR-LQELYISRNK-LKTLPDASLF-- 472
Query: 354 SAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNF 389
+ ++ IS ++ +P I L+SL+ ++L N +
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 7e-10
Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 23/227 (10%)
Query: 318 ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYL 376
+ +PS L+ ++SLD S K + L + + +L + + I + L
Sbjct: 17 FTSIPSG--LTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 377 SSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLC-----LKYLHLID 430
SLE L LS N+ SL + +S L++++L N Q+L L L+ L + +
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL-MGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 431 CKMLQSLPVLPFC----LESLDLTGCNMLRSLPELPLC----LQYLNLEDCNMLRSLPEL 482
+ + + F L L++ LR+ L + +L L L
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191
Query: 483 PLCLQLLTVRN--CNRLQSLPEILLCLQELDASVLEKLSKHSPDLQW 527
L + L L + E+ S ++KL+ L
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVS-SPMKKLAFRGSVLTD 237
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 29/171 (16%)
Query: 377 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC----LKYLHLIDCK 432
+ + +F S+P+ + + ++ + L FN + + L L+ L L +
Sbjct: 5 DASGVCDGRSRSFTSIPSGL--TAAMKSLDL-SFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 433 MLQSLPVLPFC----LESLDLTGCNMLRSLPELPLC----LQYLNLEDCNMLRSLPELPL 484
+ ++ F LE LDL+ N L SL L+YLNL N ++L L
Sbjct: 62 -INTIEGDAFYSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVTSL 118
Query: 485 C-----LQLLTVRNCNRLQSLPEILLC----LQELDAS--VLEKLSKHSPD 524
LQ L + N + I L EL+ L S
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 5e-20
Identities = 88/520 (16%), Positives = 157/520 (30%), Gaps = 84/520 (16%)
Query: 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQ-LPNGL 86
+LDLS+ + ++ +A+ + +L L+ + +Q G
Sbjct: 60 WLDLSRCEIETIEDKAWHGLHHLSNLI--------------------LTGNPIQSFSPGS 99
Query: 87 DYLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSIQNFK 144
L L L +L S L +LN+ + + +P+ N
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK------LPAYFSNLT 153
Query: 145 YLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP 204
L + +++ N +L + L + + I+ +
Sbjct: 154 NLVHVDLSYNY-IQTITVN---------------DLQFLRENPQVNLSLDMSLNPIDFIQ 197
Query: 205 SSIECLTDLEVLDLRGCKRLKRISTSFC------KLRSLVTLILLGCLNLEHFPE-ILEK 257
L L LRG I + + L+ NLE F I+E
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257
Query: 258 MEHLKR--IYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAA 314
+ + T F L + + + + L D + +
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFK-WQSLSII 315
Query: 315 ASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIA 374
+ Q P+ L L+SL + KG SF + L LS + L +
Sbjct: 316 RCQLKQFPTL-DLPF-LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373
Query: 375 YLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC-----LKYLHLI 429
+SL L LS N + A + +L+ + + + L+ + E L YL +
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDIS 432
Query: 430 DCKMLQSLPVLPFC----LESLDLTGCNMLRSLPELPLC----LQYLNLEDCNMLRSLPE 481
+ F L +L + G + + L +L+L L +
Sbjct: 433 YTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK-CQLEQISW 490
Query: 482 LPL----CLQLLTVRNCNRLQSLPEILLC----LQELDAS 513
LQLL + + N L L L LD S
Sbjct: 491 GVFDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLDCS 529
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 68/384 (17%), Positives = 125/384 (32%), Gaps = 56/384 (14%)
Query: 179 NLIEFPQ-ISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRS 236
L + P I + L + ++ + S ++L+ LDL C+ ++ L
Sbjct: 22 KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 237 LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCS-- 293
L LIL G P + L+ + + T + L S L L+ L V
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 294 --KLDNLPDNIGSLEYLY-------YILAAASA------------------ISQLPSSVA 326
KL N+ +L ++ I I + A
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ-A 200
Query: 327 LSNM-LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ---------EIAYL 376
+ L L + +T L L+ + + + ++ E
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
Query: 377 SSLEILYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPLC--LKYLHLIDCKM 433
+++ L+ N S ++ + + L ++ L ++P + L +I C+
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG-VSIKYLEDVPKHFKWQSLSIIRCQ- 318
Query: 434 LQSLPVLPF-CLESLDLTGCNMLRSLPELPL-CLQYLNLEDCNMLRSLPELPL----CLQ 487
L+ P L L+SL LT S ++ L L YL+L N L
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR-NALSFSGCCSYSDLGTNS 377
Query: 488 LLTVR-NCNRLQSLPEILLCLQEL 510
L + + N + + L+EL
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEEL 401
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-14
Identities = 61/296 (20%), Positives = 96/296 (32%), Gaps = 23/296 (7%)
Query: 137 PSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS-GKVTRLYL 195
+SA+S G S++ +++ C L +FP + + L L
Sbjct: 278 IVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRC-QLKQFPTLDLPFLKSLTL 335
Query: 196 GQSAIEEVPSSIECLTDLEVLDLRGCK--RLKRISTSFCKLRSLVTLILLGCLNLEHFPE 253
+ + L L LDL S S SL L L
Sbjct: 336 TMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL-DLSFNGAIIMSA 393
Query: 254 ILEKMEHLKRIYSDRTPITELP--SSFENLPGLEVLFVEDCSKLDNLPDNI----GSLEY 307
+E L+ + + + + S+F +L L L + D I SL
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNT 452
Query: 308 LYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA 365
L +A S S+ +N L LD S C+ LE L + LL++S
Sbjct: 453 LK--MAGNSFKDNTLSN-VFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNN 508
Query: 366 VREIPQE-IAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFNMLQSLPEL 419
+ + L SL L S N E+ + L F +L N + + E
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL-TNNSVACICEH 563
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 9e-20
Identities = 75/468 (16%), Positives = 142/468 (30%), Gaps = 66/468 (14%)
Query: 21 TDAIEGIFLDLSKIKGINL--------DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTE 72
+ + ++ + L L++ F I L
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ---NNAIHYLS----- 169
Query: 73 EQLSYSKVQLPNGLDYLPK-KLRYLHWDTYPLRTLPSN-FKPKNLVELNLRCSKVEQPWE 130
+ L + L+ + + + F LN ++
Sbjct: 170 ----------KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 131 GEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS--- 187
K S+IQ+ + + L + +IN + +
Sbjct: 220 --KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK--HYFFNISSNTFH 275
Query: 188 --GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVTLILLG 244
+ L L + + E+PS + L+ L+ L L + + + S SL L + G
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKG 334
Query: 245 -CLNLEHFPEILEKMEHLKRIYSDRTPITELPS---SFENLPGLEVLFVEDCSKLDNLPD 300
LE LE +E+L+ + I NL L+ L + + +L
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKT 393
Query: 301 NI----GSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLS 354
LE L LA + + + N+ L+ L+ SH L+ GL
Sbjct: 394 EAFKECPQLELLD--LAF-TRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLP 449
Query: 355 AMGLLHISD----YAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 409
A+ L++ + + L LEIL LS + S+ + + + L
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL-S 508
Query: 410 FNMLQSLPELPLC-LKYLHL-IDCKMLQSLPVLPFC----LESLDLTG 451
N L S L LK ++L + + + +++L
Sbjct: 509 HNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ 556
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-18
Identities = 65/442 (14%), Positives = 122/442 (27%), Gaps = 63/442 (14%)
Query: 103 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS 162
L +P P + L + + ++ L+ L CQ +
Sbjct: 24 LNEIPGTL-PNSTECLEFSFNVLPTIQ-------NTTFSRLINLTFLDLTRCQ-IYWIHE 74
Query: 163 NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGC 221
+ F L L L + + + + L+ L
Sbjct: 75 DT---------FQSQHRL----------DTLVLTANPLIFMAETALSGPKALKHLFFIQT 115
Query: 222 KRLKRI-STSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFE 279
+ I ++L +L L E LK + I L
Sbjct: 116 -GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174
Query: 280 NLPGLEVLFVEDCS-KLDNLPDNIGSLEYLYYI-LAAASAISQLPSSVALSNM--LRSLD 335
+L L + + + + + + + S + L
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234
Query: 336 SSHCKGLESFPRTFLLGLSAMGL--LHISDYAVREIPQEI-AYLSSLEILYLSGNNFESL 392
E GL M + +++ + I S L+ L L+ + L
Sbjct: 235 FEDMD-DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293
Query: 393 PAIIKQMSQLRFIHLEDFNMLQSLPELPLC----LKYLHLIDCKMLQSLPVLPFC----L 444
P+ + +S L+ + L N ++L ++ L +L + L L
Sbjct: 294 PSGLVGLSTLKKLVL-SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 445 ESLDLTGCNMLRSLPELPLC------LQYLNLEDCNMLRSLPELPLCLQLLTVRNC--NR 496
LDL+ + + + L LQ LNL L E L + + R
Sbjct: 353 RELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 497 LQSLP-----EILLCLQELDAS 513
L+ + L L+ L+ S
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLS 433
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 7e-18
Identities = 87/518 (16%), Positives = 153/518 (29%), Gaps = 80/518 (15%)
Query: 28 FLDLS--KIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMS-------TEEQLSYS 78
L+ S + I F+ + NL +I + + L+ +
Sbjct: 37 CLEFSFNVLPTIQ--NTTFSRLINLTFLDLT---RCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 79 KVQ-LPNGLDYLPKKLRYLHWDTYPLRTLPSNF--KPKNLVELNLRCSKVEQPWEGEKAC 135
+ + PK L++L + + ++ K L L L + +
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI------- 144
Query: 136 VPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYL 195
+ L L F+ + S L L
Sbjct: 145 KLPKGFPTEKLKVLDFQNNA-IHYLSKED---------MSSLQQA--------TNLSLNL 186
Query: 196 GQSAIEEVPSSIECLTDLEVLDLRGCKRLKRI--STSFCKLRSLVTLILLGCLNLEHFPE 253
+ I + + L+ G + L I ++SL + + P
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 254 ILEKME--HLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY 310
+ E + ++ I + + ++F GL+ L + L LP + L L
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKK 305
Query: 311 ILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD---YA 365
++ +A+ L + SN L L L L + L +S
Sbjct: 306 LVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364
Query: 366 VREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPL--- 421
++ LS L+ L LS N SL K+ QL + L F L+
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL-AFTRLKVKDAQSPFQN 423
Query: 422 --CLKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPELPLC-------LQYL 468
LK L+L L F L+ L+L G N L+ L
Sbjct: 424 LHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQG-NHFPKGNIQKTNSLQTLGRLEIL 481
Query: 469 NLEDCNMLRSLPELPL----CLQLLTVRNCNRLQSLPE 502
L C+ L S+ + + + + + NRL S
Sbjct: 482 VLSFCD-LSSIDQHAFTSLKMMNHVDLSH-NRLTSSSI 517
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 27/152 (17%)
Query: 380 EILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC----LKYLHLIDCKMLQ 435
+ +P + + + FN+L ++ L +L L C+ +
Sbjct: 15 KTYNCENLGLNEIPGTL--PNSTECLEF-SFNVLPTIQNTTFSRLINLTFLDLTRCQ-IY 70
Query: 436 SLPVLPFC----LESLDLTGCNMLRSLPELPLC----LQYLNLEDCNMLRSLPELPLC-- 485
+ F L++L LT N L + E L L++L + S+ +PL
Sbjct: 71 WIHEDTFQSQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQ-TGISSIDFIPLHNQ 128
Query: 486 --LQLLTVRNCNRLQSLPEILLC----LQELD 511
L+ L + + N + S+ L+ LD
Sbjct: 129 KTLESLYLGS-NHISSIKLPKGFPTEKLKVLD 159
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 8e-19
Identities = 93/521 (17%), Positives = 170/521 (32%), Gaps = 89/521 (17%)
Query: 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQ-LPNGL 86
LDLS+ + ++ A+ ++S+L L+ + +Q L G
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHLSTLI--------------------LTGNPIQSLALGA 95
Query: 87 DYLPKKLRYLHWDTYPLRTLPSNF--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFK 144
L+ L L +L + K L ELN+ + ++ +P N
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK------LPEYFSNLT 149
Query: 145 YLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP 204
L L + ++S +L Q+ L L + + +
Sbjct: 150 NLEHLDLSSNK-IQSIYCT---------------DLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 205 SSIECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVTLIL-----LGCLNLEHFPE-ILEK 257
L L LR + T L L L NLE F + LE
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 258 MEHLK----RIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIG--SLEYLYYI 311
+ +L R+ + ++ F L + + + ++ + D ++L +
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELV 312
Query: 312 LAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ 371
Q P+ S L+ L + KG +F L L + L Q
Sbjct: 313 ---NCKFGQFPTLKLKS--LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 372 EIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC-----LKYL 426
+SL+ L LS N ++ + + QL + + L+ + E + L YL
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF-QHSNLKQMSEFSVFLSLRNLIYL 426
Query: 427 HLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPELPLC----LQYLNLEDCNMLRS 478
+ + F LE L + G + + L +L+L L
Sbjct: 427 DISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQ 484
Query: 479 LPELPLC----LQLLTVRNCNRLQSLPEILLC----LQELD 511
L LQ+L + + N+L+S+P+ + LQ++
Sbjct: 485 LSPTAFNSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQKIW 524
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 5e-16
Identities = 66/349 (18%), Positives = 122/349 (34%), Gaps = 29/349 (8%)
Query: 179 NLIEFPQ-ISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRS 236
N + P + L L + + + S S +L+VLDL C+ ++ L
Sbjct: 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77
Query: 237 LVTLILLGCLNLEHFP-EILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCS- 293
L TLIL G ++ + L+++ + T + L + +L L+ L V
Sbjct: 78 LSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 294 KLDNLPDNIGSLEYLYYILAAASAISQLPSSV-----ALSNMLRSLDSSHCKGLESFPRT 348
+ LP+ +L L ++ +++ I + + + + SLD S +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPG 195
Query: 349 FLLGLSAMGL-LHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHL 407
+ L L + ++ + I L+ LE+ L F + L
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG-------NLEKFDK 248
Query: 408 EDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELP--LCL 465
L +L L YL ++ L + S L + + +
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVS-VTIERVKDFSYNFGW 306
Query: 466 QYLNLEDCNMLRSLPELPL-CLQLLTVRNCNRLQSLPEI--LLCLQELD 511
Q+L L + P L L L+ LT + N+ + L L+ LD
Sbjct: 307 QHLELVN-CKFGQFPTLKLKSLKRLTFTS-NKGGNAFSEVDLPSLEFLD 353
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 7e-13
Identities = 49/262 (18%), Positives = 92/262 (35%), Gaps = 15/262 (5%)
Query: 137 PSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS-GKVTRLYL 195
+S+ S + + + C +FP + + RL
Sbjct: 275 IDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNC-KFGQFPTLKLKSLKRLTF 332
Query: 196 GQSAIEEVPSSIECLTDLEVLDLRGCK--RLKRISTSFCKLRSLVTLILLGCLNLEHFPE 253
+ S ++ L LE LDL S S SL L L +
Sbjct: 333 TSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS 390
Query: 254 ILEKMEHLKRIYSDRTPITELP--SSFENLPGLEVLFVEDCSKLDNLPDNI-GSLEYLYY 310
+E L+ + + + ++ S F +L L L + + I L L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEV 449
Query: 311 ILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE 368
+ A ++ + + + L LD S C+ LE T LS++ +L+++ ++
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 369 IPQEI-AYLSSLEILYLSGNNF 389
+P I L+SL+ ++L N +
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 53/301 (17%), Positives = 104/301 (34%), Gaps = 57/301 (18%)
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLC--- 422
+IP + S + L LS N L + +L+ + L +Q++ +
Sbjct: 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLS 76
Query: 423 -LKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPELPLC----LQYLNLEDC 473
L L L +QSL + F L+ L L SL P+ L+ LN+
Sbjct: 77 HLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAH- 133
Query: 474 NMLRSLPELPLC-----LQLLTVRNCNRLQSLPEILLC------------------LQEL 510
N+++S L+ L + + N++QS+ L + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 511 DASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGKANNKILADS-LLRIRHMAIA 569
+++ H L+ +SL C + L+++ + + L + A+
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 570 SLRLGYEMAINEKLSELRGSLIVLPGSEIPDWFSNQSSGSSICI------QLPPHSSCRN 623
L N + E R + + +I D F+ ++ SS + ++ S
Sbjct: 253 GLC-------NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305
Query: 624 L 624
Sbjct: 306 W 306
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 3e-18
Identities = 51/358 (14%), Positives = 119/358 (33%), Gaps = 39/358 (10%)
Query: 180 LIEFPQISGKVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRIST-SFCKLRSL 237
+ E Q + + S++++ +S+ + +++ LDL G L +IS L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKL 60
Query: 238 VTLIL----------------LGCLNLEH-FPEILEKMEHLKRIYSDRTPITELPSSFEN 280
L L L L+L + + + L ++ +++ I+ + S
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS--R 118
Query: 281 LPGLEVLFVEDCSKLDNLPDN-IGSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSS 337
G + +++ + K+ L D G + Y+ + I + + ++ L L+
Sbjct: 119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 338 HCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIK 397
+ + + + + L +S + + E + + + L N + ++
Sbjct: 178 YNF-IYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234
Query: 398 QMSQLRFIHLEDFNMLQ--SLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNML 455
L L N +L + + + + + ++ L C +
Sbjct: 235 FSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE-------EECTVP 286
Query: 456 RSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDAS 513
C + L + L +L L RL+ E +E+DA
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 49/442 (11%), Positives = 111/442 (25%), Gaps = 71/442 (16%)
Query: 29 LDLS--KIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGL 86
LDLS + I + L L LS + + L
Sbjct: 39 LDLSGNPLSQI--SAADLAPFTKLELL--------------------NLSSNVLYETLDL 76
Query: 87 DYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYL 146
+ L LR L + ++ L ++ L+ + + + V S +
Sbjct: 77 ESLS-TLRTLDLNNNYVQELLVG---PSIETLHAANNNISR--------VSCSR--GQGK 122
Query: 147 SALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSS 206
+ + + + L L + I+ V +
Sbjct: 123 KNIYLANNK-ITMLRDLD---------EGCRSRV----------QYLDLKLNEIDTVNFA 162
Query: 207 --IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRI 264
LE L+L+ + + L TL L L + + I
Sbjct: 163 ELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWI 219
Query: 265 YSDRTPITELPSSFENLPGLEVLFVEDCS-KLDNLPDNIGSLEYLYYI-LAAASAISQLP 322
+ + + LE + L D + + + ++
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279
Query: 323 SSVALSNMLRSLDSSHCKGLES--FPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLE 380
L + C+ L + R L LL + E +
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339
Query: 381 ILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPV 439
+ + ++ + + + + L +D + Q++
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKK-KALDEQVSNGRRA--HAELDGTLQQAVGQ 396
Query: 440 LPFCLESLDLTGCNMLRSLPEL 461
+ + + + +LR++ +
Sbjct: 397 IELQHATEEQSPLQLLRAIVKR 418
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 39/272 (14%), Positives = 77/272 (28%), Gaps = 19/272 (6%)
Query: 178 VNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSL 237
VN E S + L L + I +V + L+ LDL +L + F +
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGV 216
Query: 238 VTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT--ELPSSFENLPGLEVLFVEDCSKL 295
+ L L + L ++L+ L F ++ + + KL
Sbjct: 217 TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275
Query: 296 DNLPD------NIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTF 349
+ +G A +L + + L S S + LE
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE---- 331
Query: 350 LLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAIIK-QMSQLRFIHL 407
+ + R + ++ + L + + + ++L
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391
Query: 408 EDF--NMLQSLPELPLCLKYLHLIDCKMLQSL 437
+ LQ E L+ L I + +
Sbjct: 392 QAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 21/161 (13%)
Query: 365 AVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLC- 422
A+ EI Q + +I ++ ++ + A + + ++ + L N L + L
Sbjct: 1 AIHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDL-SGNPLSQISAADLAP 56
Query: 423 ---LKYLHLIDCKMLQSLPVLPF--CLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLR 477
L+ L+L L L L +LDL N ++ L P ++ L+ + N +
Sbjct: 57 FTKLELLNLSSNV-LYETLDLESLSTLRTLDLNN-NYVQELLVGPS-IETLHAAN-NNIS 112
Query: 478 SLPELPLC-LQLLTVRNCNRLQSLPEILLC----LQELDAS 513
+ + + + N N++ L ++ +Q LD
Sbjct: 113 RVSCSRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLK 152
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 5e-18
Identities = 57/319 (17%), Positives = 116/319 (36%), Gaps = 34/319 (10%)
Query: 231 FCKLRSLVTLILLGCLNLEHFPEILEK------MEHLKRIYSDRTPITELPSS-FENLPG 283
C +L + ++++ + + + + K + + + +LP++ ++
Sbjct: 11 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70
Query: 284 LEVLFVEDCSKLDNLPDNI-GSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCK 340
+E+L + D +++ + + + +AI LP N+ L L
Sbjct: 71 VELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERND 128
Query: 341 GLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAIIKQM 399
L S PR + L +S+ + I + +SL+ L LS N + + +
Sbjct: 129 -LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLI 185
Query: 400 SQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFC-LESLDLTGCNMLRSL 458
L ++ +N+L +L ++ L + + L L L N L
Sbjct: 186 PSLFHANV-SYNLLSTLAIPI-AVEELDASHNS-INVVRGPVNVELTILKLQH-NNLTDT 241
Query: 459 PELPLC--LQYLNLEDCNMLRSLPELPLC----LQLLTVRNCNRLQSLPEI---LLCLQE 509
L L ++L N L + P L+ L + N NRL +L + L+
Sbjct: 242 AWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKV 299
Query: 510 LDAS--VLEKLSKHSPDLQ 526
LD S L + ++ P
Sbjct: 300 LDLSHNHLLHVERNQPQFD 318
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 5e-16
Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 17/243 (6%)
Query: 189 KVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVTLILLGCL 246
+T L L ++ + +P I L L + L+RI +F SL L L
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN- 175
Query: 247 NLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLE 306
L H L + L ++ L +E L ++ + +
Sbjct: 176 RLTHVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHN-SINVVRGPV--NV 226
Query: 307 YLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366
L + + ++ + L +D S+ + LE + + + L+IS+ +
Sbjct: 227 ELTILKLQHNNLTDTAWLLNYPG-LVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL 284
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC-LKY 425
+ + +L++L LS N+ + Q +L ++L D N + +L LK
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL-DHNSIVTLKLSTHHTLKN 343
Query: 426 LHL 428
L L
Sbjct: 344 LTL 346
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 60/329 (18%), Positives = 106/329 (32%), Gaps = 57/329 (17%)
Query: 25 EGIFLDLSKIKGINL--------DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLS 76
+ +++ +NL D AF ++ +
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL--------------------YMG 101
Query: 77 YSKV-QLPNGLDYLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNL---RCSKVEQPWE 130
++ + LP + L L + L +LP F L L++ ++E
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE---- 157
Query: 131 GEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKV 190
+ Q L L + L +L N SY NL+ I V
Sbjct: 158 ------DDTFQATTSLQNLQLSSNR-LTHVDLSL-IPSLFHANVSY--NLLSTLAIPIAV 207
Query: 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250
L ++I V + +L +L L+ L + LV + L LE
Sbjct: 208 EELDASHNSINVVRGPV--NVELTILKLQHN-NLTDTAW-LLNYPGLVEVD-LSYNELEK 262
Query: 251 FPE-ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLY 309
KM+ L+R+Y + L + +P L+VL + L ++ N + L
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 321
Query: 310 YILAAASAISQLPSSVALSNMLRSLDSSH 338
+ ++I L S L++L SH
Sbjct: 322 NLYLDHNSIVTLKLS-THHT-LKNLTLSH 348
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 47/301 (15%), Positives = 88/301 (29%), Gaps = 82/301 (27%)
Query: 25 EGIFLDLSKIKGINL--------DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLS 76
GIF + K+ +++ + F ++L+ L QLS
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ-------------NL-------QLS 173
Query: 77 YSKVQLPNGLDYLP----KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGE 132
N L ++ L + + L TL + EL+ + +
Sbjct: 174 S------NRLTHVDLSLIPSLFHANVSYNLLSTLAIPI---AVEELDASHNSINV----- 219
Query: 133 KACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTR 192
V + L+ L + L L+E
Sbjct: 220 ---VRGPV--NVELTILKLQHNN-LTDTAW-----------LLNYPGLVE---------- 252
Query: 193 LYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251
+ L + +E++ + LE L + RL ++ + +L L L +L H
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHV 310
Query: 252 PEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVED----CSKLDNLPDNIGSLEY 307
+ + L+ +Y D I L L+ L + C+ L L N+
Sbjct: 311 ERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 368
Query: 308 L 308
Sbjct: 369 D 369
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-17
Identities = 92/549 (16%), Positives = 172/549 (31%), Gaps = 97/549 (17%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLF-----KFYVPKFYEIEKLPSMSTEEQLSYSKVQLP 83
L L + F NL K +L ++ E LS
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL-QELLLSN------ 154
Query: 84 NGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNF 143
N + L + F +L +L L +++++ P
Sbjct: 155 NKIQALKSEE-------------LDIFANSSLKKLELSSNQIKEF-------SPGCFHAI 194
Query: 144 KYLSALSFKGCQSLRSFPSNLHFVCPVT----INFSYCVNLIEFPQISG------KVTRL 193
L L Q S L T ++ S L + +T L
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTML 253
Query: 194 YLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF- 251
L + + V S L LE L S S L ++ L L +
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313
Query: 252 --------PEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVED-CSKLDNLPDN 301
+ ++ L+ + + I + + F L L+ L + + + L L +
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373
Query: 302 IGS---LEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLSAM 356
L+ + + IS++ S A S + L LD + + GL +
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432
Query: 357 GLLHISDYAVREIPQE-IAYLSSLEILYLSGNNFESL---PAIIKQMSQLRFIHLEDFNM 412
+++S ++ + A + SL+ L L +++ P+ + + L + L + N
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN-NN 491
Query: 413 LQSLPELPLC----LKYLHL-------IDCKMLQSLPVLPFC----LESLDLTGCNMLRS 457
+ ++ + L L+ L L + P+ L L+L N
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDE 550
Query: 458 LPELPL----CLQYLNLEDCNMLRSLPELPLC----LQLLTVRNCNRLQSLPEILLC--- 506
+P L+ ++L N L +LP L+ L ++ N + S+ + +
Sbjct: 551 IPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAF 608
Query: 507 --LQELDAS 513
L ELD
Sbjct: 609 RNLTELDMR 617
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-16
Identities = 68/394 (17%), Positives = 131/394 (33%), Gaps = 61/394 (15%)
Query: 171 TINFSYCVNLIEFPQ-ISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDL---------- 218
+ S+ L + P + +T L L + + + ++ + L LD+
Sbjct: 8 VADCSHL-KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 219 ---RGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF-----------PEILEKMEHLKRI 264
+ LK ++ +L L C NL K ++L +
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126
Query: 265 YSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDN---IGSLEYLYYILAAASAISQ 320
++ + L L+ L + + K+ L I + L + +++ I +
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 321 LPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLSAMGL--LHISDYAVREIPQEI--- 373
+ L L ++ + S L L+ + L +S+ +
Sbjct: 186 FSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 374 AYLSSLEILYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPLC----LKYLHL 428
++L +L LS NN + + QL + LE +N +Q L L ++YL+L
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE-YNNIQHLFSHSLHGLFNVRYLNL 303
Query: 429 IDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLC--- 485
+S L SL + L L++LN+ED N + +
Sbjct: 304 -----KRSFTKQSISLASLPKIDDFSFQWLKC----LEHLNMED-NDIPGIKSNMFTGLI 353
Query: 486 -LQLLTVRNCNRLQSLPEILLCLQELDASVLEKL 518
L+ L++ N + L S L L
Sbjct: 354 NLKYLSLSN-SFTSLRTLTNETFVSLAHSPLHIL 386
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 4e-16
Identities = 71/343 (20%), Positives = 126/343 (36%), Gaps = 43/343 (12%)
Query: 208 ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF-PEILEKMEHLKRIYS 266
+C EV D +L ++ ++ L L L + L +
Sbjct: 1 KCTVSHEVADCSHL-KLTQVPDDL--PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDV 56
Query: 267 DRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDN-IGSLEYLYYILAAASAISQLPSS 324
I++L P + LP L+VL ++ +L L D L + +++I ++ ++
Sbjct: 57 GFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115
Query: 325 VALSNM--LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQE---IAYLSSL 379
L +LD SH L S + L + L +S+ ++ + E I SSL
Sbjct: 116 -PFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173
Query: 380 EILYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPLC-------LKYLHLIDC 431
+ L LS N + P + +L + L + L LC ++ L L +
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNLSLSNS 232
Query: 432 KMLQSLPVLPFC------LESLDLTGCNMLRSLPELPLC----LQYLNLEDCNMLRSLPE 481
+ L + F L LDL+ N L + L+Y LE N ++ L
Sbjct: 233 Q-LSTTSNTTFLGLKWTNLTMLDLSY-NNLNVVGNDSFAWLPQLEYFFLEY-NNIQHLFS 289
Query: 482 LPLC----LQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSK 520
L ++ L ++ QS+ L L ++D + L
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSIS--LASLPKIDDFSFQWLKC 330
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 5e-16
Identities = 89/545 (16%), Positives = 167/545 (30%), Gaps = 112/545 (20%)
Query: 28 FLDLS--KIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQ-LPN 84
LD+ I + +P + L++ L ++++ L +
Sbjct: 53 SLDVGFNTISKL--EPELCQKLPMLKVL--------------------NLQHNELSQLSD 90
Query: 85 GLDYLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSIQN 142
L LH + ++ + +N F KNL+ L+L + + +
Sbjct: 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-------KLGTQVQ 143
Query: 143 FKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202
+ L L + + ++ +L + L L + I+E
Sbjct: 144 LENLQELLLSNN--------KIQALKSEELDIFANSSLKK----------LELSSNQIKE 185
Query: 203 V-PSSIECLTDLEVLDLRGCKRLKRISTSFC---KLRSLVTLILLGCLNLEHFPEIL--- 255
P + L L L + ++ C S+ L L L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLG 244
Query: 256 EKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAA 314
K +L + + + SF LP LE F+E + ++ L + Y+
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 315 ASAISQLPSSVALSN----------MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY 364
S Q S +L L L+ + GL + L +S+
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNS 363
Query: 365 AV--REIPQEI---AYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPE 418
R + E S L IL L+ N + + + L + L + Q L
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423
Query: 419 LPLC----LKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPELPLC------ 464
+ ++L K L F L+ L L L+++ P
Sbjct: 424 QEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRR-VALKNVDSSPSPFQPLRN 481
Query: 465 LQYLNLEDCNMLRSLPELPLC----LQLLTVRNCNRLQSLPE------------ILLCLQ 508
L L+L + N + ++ + L L++L +++ N L L + L L
Sbjct: 482 LTILDLSN-NNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 509 ELDAS 513
L+
Sbjct: 540 ILNLE 544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 8e-14
Identities = 84/430 (19%), Positives = 152/430 (35%), Gaps = 59/430 (13%)
Query: 83 PNGLDYLPKKLRYLHWDTYPLRTLPSN--FKPKNLVELNLRCSKVEQPWEGEKACVPSSI 140
+ +LP+ L Y + ++ L S+ N+ LNL+ S +Q S+
Sbjct: 265 NDSFAWLPQ-LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS---------ISL 314
Query: 141 QNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAI 200
+ + SF+ + L N+ I + LI + L L S
Sbjct: 315 ASLPKIDDFSFQWLKCLEHL--NMEDNDIPGIKSNMFTGLI-------NLKYLSLSNSFT 365
Query: 201 EEVPSSIE-----CLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC-LNLEHFPEI 254
+ E + L +L+L K K S +F L L L L + E +
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 255 LEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDC--SKLDNLPDNIGSLEYLYYI 311
+E++ IY +L +SF +P L+ L + +D+ P L L +
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 312 LAAASAISQLPSSVALSNM--LRSLDSSHCK-------GLESFPRTFLLGLSAMGLLHIS 362
+ + I+ + L + L LD H P FL GLS + +L++
Sbjct: 486 DLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 363 DYAVREIPQE-IAYLSSLEILYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELP 420
EIP E L L+I+ L NN +L ++ L+ ++L N++ S+ +
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL-QKNLITSVEKKV 603
Query: 421 LC-----LKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLC----------L 465
L L + + + + + ++ T + L LC +
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH-TNIPELSSHYLCNTPPHYHGFPV 662
Query: 466 QYLNLEDCNM 475
+ + C
Sbjct: 663 RLFDTSSCKD 672
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 44/318 (13%), Positives = 108/318 (33%), Gaps = 36/318 (11%)
Query: 182 EFPQISGKVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVT 239
E Q + + S++++ +S+ + +++ LDL G L +IS L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLEL 62
Query: 240 LIL----------------LGCLNLEH-FPEILEKMEHLKRIYSDRTPITELPSSFENLP 282
L L L L+L + + + L ++ +++ I+ +
Sbjct: 63 LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC--SRGQ 120
Query: 283 GLEVLFVEDCSKLDNLPDN-IGSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHC 339
G + +++ + K+ L D G + Y+ + I + + ++ L L+ +
Sbjct: 121 GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 340 KGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQM 399
+ + + + L +S + + E + + + L N + ++
Sbjct: 180 F-IYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236
Query: 400 SQLRFIHLEDFNMLQ--SLPELPLCLKYLHLIDCKMLQSLPVLPF---CLESLDLTGCNM 454
L L N +L + + + + + ++ L + +L G
Sbjct: 237 QNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295
Query: 455 LRSLPELPLCLQYLNLED 472
LP P + + L
Sbjct: 296 CEDLPA-PFADRLIALGH 312
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 39/268 (14%), Positives = 94/268 (35%), Gaps = 40/268 (14%)
Query: 252 PEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDN-IGSLEYLY 309
EI + K + + + +S ++ ++ L + L + + L
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLE 61
Query: 310 YILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI 369
+ +++ + + +LS LR+LD ++ ++ ++ LH ++ + +
Sbjct: 62 LLNLSSNVLYETLDLESLST-LRTLDLNNNY-VQELLV-----GPSIETLHAANNNISRV 114
Query: 370 PQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHL 428
+ +YL+ N L S+++++ L N + ++
Sbjct: 115 SCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL-KLNEIDTVNF-AELAASSDT 170
Query: 429 IDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLC--LQYLNLEDCNMLRSLPE----L 482
LE L+L N + + + L+ L+L N L +
Sbjct: 171 ---------------LEHLNLQY-NFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSA 213
Query: 483 PLCLQLLTVRNCNRLQSLPEILLCLQEL 510
+ +++RN N+L + + L Q L
Sbjct: 214 AG-VTWISLRN-NKLVLIEKALRFSQNL 239
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 27/155 (17%), Positives = 60/155 (38%), Gaps = 18/155 (11%)
Query: 369 IPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLC----L 423
I + + +I ++ ++ + A + + ++ + L N L + L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL-SGNPLSQISAADLAPFTKL 60
Query: 424 KYLHLIDCKMLQSLPVLPFC--LESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPE 481
+ L+L L L L +LDL N ++ L P ++ L+ + N + +
Sbjct: 61 ELLNLSSNV-LYETLDLESLSTLRTLDLNN-NYVQELLVGP-SIETLHAAN-NNISRVSC 116
Query: 482 LPL-CLQLLTVRNCNRLQSLPEILLC----LQELD 511
+ + + N N++ L ++ +Q LD
Sbjct: 117 SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLD 150
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 44/353 (12%), Positives = 87/353 (24%), Gaps = 70/353 (19%)
Query: 21 TDAIEGIFLDLSKIKGINL--------DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTE 72
A+ + +K ++L + L L
Sbjct: 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL------------------- 63
Query: 73 EQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGE 132
LS + + L+ L LR L + ++ L ++ L+ + + +
Sbjct: 64 -NLSSNVLYETLDLESLS-TLRTLDLNNNYVQELLV---GPSIETLHAANNNISR----- 113
Query: 133 KACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTR 192
V S + + + + +
Sbjct: 114 ---VSCSR--GQGKKNIYLANNK-ITMLRDLD---------EGCRSRV----------QY 148
Query: 193 LYLGQSAIEEVP--SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250
L L + I+ V LE L+L+ + + L TL L L
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLSSN-KLAF 205
Query: 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCS-KLDNLPDNIGSLEYLY 309
+ + I + + + LE + L D + +
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265
Query: 310 YILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHIS 362
+ A + +L + +L E P F L A+G H
Sbjct: 266 TV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 3e-17
Identities = 72/349 (20%), Positives = 128/349 (36%), Gaps = 75/349 (21%)
Query: 143 FKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202
F YL+A + C ++ + S CP S C S + +++ + + E
Sbjct: 21 FVYLTAQVWILCAAIAAAASAGPQNCP-----SVC-------SCSNQFSKVVCTRRGLSE 68
Query: 203 VPSSIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGCLNLEHFPE-ILEKMEH 260
VP I ++ L+L ++ I +F L L L L ++ +
Sbjct: 69 VPQGI--PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLAS 124
Query: 261 LKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS 319
L + +T +PS +FE L L L++ + ++++P A +
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSY---------------AFN 168
Query: 320 QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSL 379
++PS L LD K LE GL + L++ ++++P + L L
Sbjct: 169 RVPS-------LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGL 220
Query: 380 EILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLP 438
E L +SGN+F + +S L+ + + + + + L
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWV-MNSQVSLIER-------------NAFDGLA 266
Query: 439 VLPFCLESLDLTGCNMLRSLPE-----LPLCLQYLNLE------DCNML 476
L L+L N L SLP L L L+L DC++L
Sbjct: 267 S----LVELNLAH-NNLSSLPHDLFTPLRY-LVELHLHHNPWNCDCDIL 309
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 31/167 (18%)
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPE-----LP 420
E+PQ I S+ L L NN + + A + + L + L N ++ + L
Sbjct: 67 SEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLA 123
Query: 421 LCLKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPE-----LPLCLQYLNLE 471
L L L D L +P F L L L N + S+P +P L L+L
Sbjct: 124 S-LNTLELFDNW-LTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVP-SLMRLDLG 179
Query: 472 DCNMLRSLPE-----LPLCLQLLTVRNCNRLQSLPEI--LLCLQELD 511
+ L + E L L+ L + ++ +P + L+ L+EL+
Sbjct: 180 ELKKLEYISEGAFEGLFN-LKYLNLGM-CNIKDMPNLTPLVGLEELE 224
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 53/267 (19%), Positives = 84/267 (31%), Gaps = 59/267 (22%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKV-QLPNG-L 86
L+L + + F ++ +L QL + + Q+ G
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLE--------------------VLQLGRNSIRQIEVGAF 119
Query: 87 DYLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSI-QNF 143
+ L L L L +PS F+ L EL LR + +E +PS
Sbjct: 120 NGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES--------IPSYAFNRV 170
Query: 144 KYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEV 203
L L + L F NL L LG I+++
Sbjct: 171 PSLMRLDLGELKKLEYISEGA---------FEGLFNL----------KYLNLGMCNIKDM 211
Query: 204 PSSIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGCLNLEHFPE-ILEKMEHL 261
P ++ L LE L++ G I SF L SL L ++ + + + L
Sbjct: 212 P-NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASL 268
Query: 262 KRIYSDRTPITELPSS-FENLPGLEVL 287
+ ++ LP F L L L
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVEL 295
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 6e-17
Identities = 74/411 (18%), Positives = 122/411 (29%), Gaps = 60/411 (14%)
Query: 137 PSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLG 196
P N L L + + + Q+ L L
Sbjct: 142 PEYFSNLTNLEHLDLSSN--------KIQSIYCTDLRV--------LHQMPLLNLSLDLS 185
Query: 197 QSAIEEVPSSIECLTDLEVLDLRGCK-RLKRISTSFCKLRSLVTLIL-----LGCLNLEH 250
+ + + L L LR L + T L L L NLE
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245
Query: 251 FPE-ILEKMEHLK----RIYSDRTPITELPSSFENLPGLEVLFVEDC--SKLDNLPDNIG 303
F + LE + +L R+ + ++ F L + + ++ + N
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-F 304
Query: 304 SLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD 363
++L Q P+ S L+ L + KG +F L L + L
Sbjct: 305 GWQHLEL---VNCKFGQFPTLKLKS--LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359
Query: 364 YAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC- 422
Q +SL+ L LS N ++ + + QL + + L+ + E +
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF-QHSNLKQMSEFSVFL 418
Query: 423 ----LKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPELPLC----LQYLNL 470
L YL + + F LE L + G + + L +L+L
Sbjct: 419 SLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 471 EDCNMLRSLPELPLC----LQLLTVRNCNRLQSLPEILLC----LQELDAS 513
L L LQ+L + + N SL LQ LD S
Sbjct: 478 SQ-CQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYS 526
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 60/342 (17%), Positives = 110/342 (32%), Gaps = 21/342 (6%)
Query: 84 NGLDYLPKKLRYLHWDTYPLRTLPSNFKP-KNLVELNLRCSKVEQPWEGEKACVPSSIQN 142
GL+ L + + S + NL R + ++ + +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD----IIDLFNC 280
Query: 143 FKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS-GKVTRLYLGQSAIE 201
+S+ S + + + C +FP + + RL +
Sbjct: 281 LTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGG 338
Query: 202 EVPSSIECLTDLEVLDLRGCK--RLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKME 259
S ++ L LE LDL S S SL L L + +E
Sbjct: 339 NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLE 396
Query: 260 HLKRIYSDRTPITEL--PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASA 317
L+ + + + ++ S F +L L L + L L + A ++
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 318 ISQLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD-YAVREIPQEIA 374
+ + + L LD S C+ LE T LS++ +L++S
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515
Query: 375 YLSSLEILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQ 414
L+SL++L S N+ + + S L F++L N
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL-TQNDFA 556
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 26/169 (15%)
Query: 367 REIPQEIAYLSSLEILYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPLC--- 422
+IP + S + L LS N L +L+ + L +Q++ +
Sbjct: 20 YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL-SRCEIQTIEDGAYQSLS 76
Query: 423 -LKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPELPLC----LQYLNLEDC 473
L L L +QSL + F L+ L N L SL P+ L+ LN+
Sbjct: 77 HLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH- 133
Query: 474 NMLRSLPELPLC-----LQLLTVRNCNRLQSL-PEILLCLQELDASVLE 516
N+++S L+ L + + N++QS+ L L ++ L
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLS 181
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 7e-17
Identities = 96/571 (16%), Positives = 181/571 (31%), Gaps = 73/571 (12%)
Query: 28 FLDLSKIKGINLDPRAFTNMSNL--------RLFKFYVPKFYEIEKLPSMSTEEQLS--- 76
LDL K L P AF + +L L + Y L ++ +L
Sbjct: 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY-FRNLKAL---TRLDLSK 132
Query: 77 --YSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP----SNFKPKNLVELNLRCSKVEQPWE 130
+ L L L+ + + + + + + K L +L + +
Sbjct: 133 NQIRSLYLHPSFGKLN-SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 131 GEKACVPSSIQNFKYLSALSFKGCQ----SLRSFPSNLHFVCPVTINFSYCVNLIEF--- 183
+ + +N L L G +F + + ++ ++ + F
Sbjct: 192 VDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250
Query: 184 -----------PQISGKVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRI-STS 230
V L L + + S + E L DL+VL+L K + +I +
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEA 309
Query: 231 FCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFV 289
F L +L L L L E + + + I + I + +F+ L L+ L +
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Query: 290 EDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTF 349
DN I + + I + + + LP ++ + S + F
Sbjct: 370 R-----DNALTTIHFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSENRLENLDILYF 421
Query: 350 LLGLSAMGLLHISDYAVREIPQE--IAYLSSLEILYLSGNNFESL------PAIIKQMSQ 401
LL + + +L ++ + + SLE L+L N + + + +S
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 402 LRFIHLEDFNMLQSLPELPLC----LKYLHLIDCKMLQSLPVLPFC--LESLDLTGCNML 455
L+ ++L + N L SLP L+ L L + L L LE LD++ N L
Sbjct: 482 LQVLYL-NHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDLPANLEILDISR-NQL 538
Query: 456 RSLPELPL-CLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDASV 514
+ L L++ + + L N + P + C+ S
Sbjct: 539 LAPNPDVFVSLSVLDITHNKFICECELSTF-INWLNHTN-VTIAGPPADIYCVYPDSFSG 596
Query: 515 LEKLSKHSPDLQWAPESLKSAAICFEFTNCL 545
+ S + F
Sbjct: 597 VSLFSLSTEGCDEEEVLKSLKFSLFIVCTVT 627
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 4e-14
Identities = 98/543 (18%), Positives = 174/543 (32%), Gaps = 117/543 (21%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL---PNG 85
L LS + +F + L+L +L L
Sbjct: 29 LLLSFNYIRTVTASSFPFLEQLQLL--------------------ELGSQYTPLTIDKEA 68
Query: 86 LDYLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSIQNF 143
LP LR L + + L + F+ +L EL L +
Sbjct: 69 FRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA--------------- 112
Query: 144 KYLSALSFKGCQSLRS--FPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIE 201
L F+ ++L N + +F +L + + I
Sbjct: 113 -VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL----------KSIDFSSNQIF 161
Query: 202 EVP-SSIECLT--DLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF------- 251
V +E L L L R+S + K + ++L L++
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221
Query: 252 -----------PEILEKMEHLKRIYSDRTPITELP-SSFENLP--GLEVLFVEDCSKLDN 297
L H+ I + ++F L + L + + +
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFS 280
Query: 298 LPDNI-GSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLS 354
L + +L+ L + A + I+++ A + L+ L+ S+ L + GL
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNL-LGELYSSNFYGLP 338
Query: 355 AMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 413
+ + + + I + +L L+ L L N ++ + + I L N L
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFL-SGNKL 393
Query: 414 QSLPELPLCLKYLHLIDCKMLQSLPVLPFC-----LESLDLTGCNMLRSLPELPLC---- 464
+LP++ L +HL + + L++L +L F L+ L L N S
Sbjct: 394 VTLPKINLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTPSENP 451
Query: 465 -LQYLNLEDCNMLRSLPELPLC---------LQLLTVRNCNRLQSLPEI----LLCLQEL 510
L+ L L NML+ E LC LQ+L + + N L SLP L L+ L
Sbjct: 452 SLEQLFL-GENMLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGL 509
Query: 511 DAS 513
+
Sbjct: 510 SLN 512
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 96/523 (18%), Positives = 175/523 (33%), Gaps = 100/523 (19%)
Query: 28 FLDLSK-IKGINLDPRAFTNMSNLRLFKFYVPKFYEIEK-----LPSMSTEEQLSYSKVQ 81
L+L + +D AF N+ NLR+ K Y + L + E +L + +
Sbjct: 52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL-FELRLYFCGLS 110
Query: 82 LP--------------------NGLDYLP--------KKLRYLHWDTYPLRTLP----SN 109
N + L L+ + + + + +
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170
Query: 110 FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169
+ K L +L + + + + +N L L S +
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILDV----------SGNGWTVD 219
Query: 170 VTINFSYCVNLIEFPQISG--KVTRLYLGQSAIEEVPSSI---ECLTDLEVLDLRGCKRL 224
+T NFS ++ + + + G I++ + + + LDL +
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FV 278
Query: 225 KRI-STSFCKLRSLVTLILLGCLNLEHFPE-ILEKMEHLKRIYSDRTPITELPS-SFENL 281
+ S F L+ L L L + + +++L+ + + EL S +F L
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337
Query: 282 PGLEVLFVEDCSKLDNLPDNI----GSLEYLYYILAAASAISQLPSSVALSNMLRSLDSS 337
P + + ++ + + D L+ L A + I +PS + + S
Sbjct: 338 PKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS-------IPDIFLS 389
Query: 338 HCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQE--IAYLSSLEILYLSGNNFESLP-- 393
K L + P+ L +H+S+ + + + + L+IL L+ N F S
Sbjct: 390 GNK-LVTLPKINLTANL----IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
Query: 394 AIIKQMSQLRFIHLEDFNMLQSLPELPLC---------LKYLHLIDCKMLQSLPVLPFC- 443
+ L + L + NMLQ E LC L+ L+L L SLP F
Sbjct: 445 QTPSENPSLEQLFLGE-NMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSH 502
Query: 444 ---LESLDLTGCNMLRSLPE--LPLCLQYLNLEDCNMLRSLPE 481
L L L N L L LP L+ L++ N L +
Sbjct: 503 LTALRGLSLNS-NRLTVLSHNDLPANLEILDISR-NQLLAPNP 543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 3e-13
Identities = 66/368 (17%), Positives = 114/368 (30%), Gaps = 49/368 (13%)
Query: 168 CPVTINFSYC--VNLIEFPQISGKVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRL 224
C ++ NL + PQ+ RL L + I V +S L L++L+L
Sbjct: 2 CSFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61
Query: 225 KRI-STSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL---PSSFEN 280
I +F L +L L L P+ + + HL + +++ F N
Sbjct: 62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
Query: 281 LPGLEVLFVEDCS----KLDNLPDNIGSLEYLYYILAAASAISQLPSSVALS-NMLRSLD 335
L L L + L + SL+ + S N + +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID-----------------FSSNQIFLVC 164
Query: 336 SSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAI 395
+ L+ +F L+A L + + LEIL +SGN +
Sbjct: 165 EHELEPLQGKTLSFFS-LAANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITG 222
Query: 396 IKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNML 455
+ + + + + D L + LDL+ +
Sbjct: 223 N-FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRHLDLSH-GFV 278
Query: 456 RSLPELPL----CLQYLNLEDCNMLRSLPELPLC----LQLLTVRNCNRLQSLPEI---- 503
SL L+ LNL N + + + LQ+L + N L L
Sbjct: 279 FSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYG 336
Query: 504 LLCLQELD 511
L + +D
Sbjct: 337 LPKVAYID 344
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 51/290 (17%), Positives = 83/290 (28%), Gaps = 51/290 (17%)
Query: 246 LNLEHFPEILEKMEHLKRIYSDRTPITELP-SSFENLPGLEVLFVEDCSKLDNLPDNIGS 304
NL P++L +R+ I + SSF L L++L + +
Sbjct: 14 CNLTQVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE--- 67
Query: 305 LEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD- 363
A LP+ LR LD K + GL + L +
Sbjct: 68 ------------AFRNLPN-------LRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFC 107
Query: 364 --YAVREIPQEIAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQSLPE- 418
L +L L LS N SL +++ L+ I N + + E
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF-SSNQIFLVCEH 166
Query: 419 --LPLCLKYLHLIDCKM--LQSLPVLPFC----------LESLDLTGCNMLRSLPEL-PL 463
PL K L L S + + LE LD++G +
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226
Query: 464 CLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDAS 513
+ + + + + N L ++ LD S
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR--SSVRHLDLS 274
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 31/192 (16%)
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLC--- 422
++PQ L++ E L LS N ++ A + QL+ + L ++ +
Sbjct: 17 TQVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73
Query: 423 -LKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNM-LRSLPELPLC----LQYLNLED 472
L+ L L K + L F L L L C + L + L L+L
Sbjct: 74 NLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132
Query: 473 CNMLRSLPELPL-----CLQLLTVRNCNRLQSLPEILLC------LQELDASVLEKLSKH 521
N +RSL P L+ + + N++ + E L L + S+
Sbjct: 133 -NQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 522 SPDLQWAPESLK 533
S D +
Sbjct: 191 SVDWGKCMNPFR 202
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 8e-17
Identities = 57/341 (16%), Positives = 112/341 (32%), Gaps = 25/341 (7%)
Query: 189 KVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVTLILLGCL 246
+T L L ++ + +P I L L + L+RI +F SL L L
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN- 181
Query: 247 NLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNI-GSL 305
L H L + L ++ L +E L ++ + + L
Sbjct: 182 RLTHVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHN-SINVVRGPVNVEL 234
Query: 306 EYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA 365
L + ++ + L +D S+ + LE + + + L+IS+
Sbjct: 235 TILK---LQHNNLTDTAWLLNYPG-LVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR 289
Query: 366 VREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLK 424
+ + + +L++L LS N+ + Q +L ++L+ N + +L LK
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH-NSIVTLKLSTHHTLK 348
Query: 425 YLHL----IDCKMLQSLPVLPFCLESLDL-TGCNMLRSLPELPLCLQYLNLEDCNMLRSL 479
L L DC L++L D C + L C + +L+ +
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408
Query: 480 PELPL-CLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLS 519
+ C+ ++ + + L
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 65/503 (12%), Positives = 150/503 (29%), Gaps = 95/503 (18%)
Query: 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKV-QLPNGL 86
L+L+ ++ +D AF ++ + ++ + LP +
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKL--------------------YMGFNAIRYLPPHV 118
Query: 87 DYLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSIQNFK 144
L L + L +LP F L L++ S N +
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM------------------SNNNLE 160
Query: 145 YLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP 204
+ +F+ SL+ L L + + V
Sbjct: 161 RIEDDTFQATTSLQ---------------------------------NLQLSSNRLTHVD 187
Query: 205 SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRI 264
S+ + L ++ ++ ++ L ++ L +
Sbjct: 188 LSL--IPSLFHANVSYNL-----LSTLAIPIAVEELDASHN-SINVVRG--PVNVELTIL 237
Query: 265 YSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNI-GSLEYLYYILAAASAISQLPS 323
+T+ N PGL + + +L+ + + ++ L + + + + L
Sbjct: 238 KLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNL 295
Query: 324 SVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILY 383
L+ LD SH L R + L++ ++ + +L+ L
Sbjct: 296 YGQPIPTLKVLDLSHNH-LLHVERNQ-PQFDRLENLYLDHNSIVTLKLST--HHTLKNLT 351
Query: 384 LSGNNFE--SLPAIIKQMSQLRFIHLE-DFNMLQSLPELPLCLKYLHLIDCKMLQSLPVL 440
LS N+++ SL A+ + +++ + + L C + ++LQ + +
Sbjct: 352 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALT 411
Query: 441 PF-CLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQS 499
C+ ++ + Y+ + L+ +L + L
Sbjct: 412 SVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNE 471
Query: 500 LPEILLCLQELDASVLEKLSKHS 522
+ LQ L A + L ++
Sbjct: 472 QIQQEQLLQGLHAEIDTNLRRYR 494
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 54/425 (12%), Positives = 119/425 (28%), Gaps = 80/425 (18%)
Query: 25 EGIFLDLSKIKGINL--------DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLS 76
+F ++ + + L F N L +S
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL--------------------SMS 155
Query: 77 YSKVQLPNGLDYLP-------KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPW 129
N L+ + L+ L + L + + +L N+ + +
Sbjct: 156 N------NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL-IPSLFHANVSYNLL---- 204
Query: 130 EGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISG- 188
S++ + L + + V + + NL + +
Sbjct: 205 --------STLAIPIAVEELDASHNS-INVVRGPV-NVELTILKLQHN-NLTDTAWLLNY 253
Query: 189 -KVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCL 246
+ + L + +E++ + LE L + RL ++ + +L L L
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN- 311
Query: 247 NLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVED----CSKLDNLPDNI 302
+L H + + L+ +Y D I L L+ L + C+ L L N+
Sbjct: 312 HLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNV 369
Query: 303 GSLEYLY--------YILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLS 354
Y L + L +L+ + + +
Sbjct: 370 ARPAVDDADQHCKIDYQLEHGLCCKESDKPY-LDRLLQYIALTSVVEKVQRAQGRCSATD 428
Query: 355 AMGLLHISDYAVRE---IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFN 411
+ + + + + +P + E+ L + I+Q L+ +H E
Sbjct: 429 TINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT 488
Query: 412 MLQSL 416
L+
Sbjct: 489 NLRRY 493
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-16
Identities = 62/305 (20%), Positives = 121/305 (39%), Gaps = 63/305 (20%)
Query: 187 SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGC 245
S + +++ + + EVP I T+ +L+L +++ I SF LR L L L
Sbjct: 42 SNQFSKVICVRKNLREVPDGI--STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN 98
Query: 246 LNLEHFPE-ILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIG 303
++ + +L + +T +P+ +F L L+ L++ + ++++P
Sbjct: 99 -HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPS--- 153
Query: 304 SLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD 363
A +++PS LR LD K L GLS + L+++
Sbjct: 154 ------------YAFNRIPS-------LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 364 YAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLC 422
+REIP + L L+ L LSGN+ ++ + + L+ + + + +Q +
Sbjct: 195 CNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM-IQSQIQVIER---- 248
Query: 423 LKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPE-----LPLCLQYLNLE------ 471
+L L ++L N L LP L L+ ++L
Sbjct: 249 ---------NAFDNLQS----LVEINLAH-NNLTLLPHDLFTPLHH-LERIHLHHNPWNC 293
Query: 472 DCNML 476
+C++L
Sbjct: 294 NCDIL 298
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 31/167 (18%)
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPE-----LP 420
RE+P I ++ +L L N + + K + L + L N ++++ L
Sbjct: 56 REVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLA 112
Query: 421 LCLKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPE-----LPLCLQYLNLE 471
L L L D + L ++P F L+ L L N + S+P +P L+ L+L
Sbjct: 113 -NLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIP-SLRRLDLG 168
Query: 472 DCNMLRSLPE-----LPLCLQLLTVRNCNRLQSLPEI--LLCLQELD 511
+ L + E L L+ L + L+ +P + L+ L ELD
Sbjct: 169 ELKRLSYISEGAFEGLSN-LRYLNLAM-CNLREIPNLTPLIKLDELD 213
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 55/267 (20%), Positives = 87/267 (32%), Gaps = 59/267 (22%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKV-QLPNG-L 86
L+L + + + +F ++ +L QLS + + + G
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLE--------------------ILQLSRNHIRTIEIGAF 108
Query: 87 DYLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSI-QNF 143
+ L L L L T+P+ F L EL LR + +E +PS
Sbjct: 109 NGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES--------IPSYAFNRI 159
Query: 144 KYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEV 203
L L + L F NL L L + E+
Sbjct: 160 PSLRRLDLGELKRLSYISEGA---------FEGLSNL----------RYLNLAMCNLREI 200
Query: 204 PSSIECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVTLILLGCLNLEHFPE-ILEKMEHL 261
P ++ L L+ LDL G L I SF L L L ++ ++ + ++ L
Sbjct: 201 P-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSL 257
Query: 262 KRIYSDRTPITELPSS-FENLPGLEVL 287
I +T LP F L LE +
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERI 284
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 58/353 (16%), Positives = 131/353 (37%), Gaps = 29/353 (8%)
Query: 62 EIEKLPSMSTEEQLSYSKVQL--PNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELN 119
+I ++ + K + + L + + L + ++ NL LN
Sbjct: 14 QIFPDADLAEGIRAVLQKASVTDVVTQEEL-ESITKLVVAGEKVASIQGIEYLTNLEYLN 72
Query: 120 LRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVN 179
L +++ S + N L+ L + + + + + + N
Sbjct: 73 LNGNQITDI---------SPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNED-N 121
Query: 180 LIEFPQISG--KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSL 237
+ + ++ K+ L LG + S + +T L L + K +K ++ L L
Sbjct: 122 ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVT-PIANLTDL 179
Query: 238 VTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDN 297
+L L +E L + L + IT++ N+ L L + + K+ +
Sbjct: 180 YSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KITD 235
Query: 298 LPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMG 357
L + +L L ++ + IS + + L+ L+ L+ + + L LS +
Sbjct: 236 LS-PLANLSQLTWLEIGTNQISDINAVKDLTK-LKMLNVGSNQ-ISDIS--VLNNLSQLN 290
Query: 358 LLHISDYAVR-EIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 409
L +++ + E + I L++L L+LS N+ + + +S++ +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 50/287 (17%), Positives = 108/287 (37%), Gaps = 25/287 (8%)
Query: 237 LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLD 296
TL L + FP + R + +T++ + E L + L V K+
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGE-KVA 57
Query: 297 NLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAM 356
++ I L L Y+ + I+ + L L +L K + L L+ +
Sbjct: 58 SIQG-IEYLTNLEYLNLNGNQITDISPLSNLVK-LTNLYIGTNK-ITDIS--ALQNLTNL 112
Query: 357 GLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSL 416
L++++ + +I +A L+ + L L N+ S + + M+ L ++ + + + ++ +
Sbjct: 113 RELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDV 170
Query: 417 PELPLC--LKYLHLIDCKMLQSLPVLPFC--LESLDLTGCNMLRSLPELPLC--LQYLNL 470
+ L L L + ++ + L L N + + + L L +
Sbjct: 171 TPIANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTA-YVNQITDITPVANMTRLNSLKI 228
Query: 471 EDCNMLRSLPELPLC--LQLLTVRNCNRLQSLPEI--LLCLQELDAS 513
+ N + L L L L + N++ + + L L+ L+
Sbjct: 229 GN-NKITDLSPLANLSQLTWLEIGT-NQISDINAVKDLTKLKMLNVG 273
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 61/305 (20%), Positives = 107/305 (35%), Gaps = 30/305 (9%)
Query: 148 ALSFKGCQSLRSFPSNLHFVCPV----TINFSYC--VNLIEFPQ-ISGKVTRLYLGQSAI 200
A + G L S P +CP + C + L P+ IS T L L + I
Sbjct: 7 AETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDI 66
Query: 201 EEVP-SSIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGCLNLEHFPEILEKM 258
E+ + L L L L K + +I +F LR L L + +L P L
Sbjct: 67 SELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPS- 123
Query: 259 EHLKRIYSDRTPITELP-SSFENLPGLEVLFVED-CSKLDNLPDNIGSLEYLYYILAAAS 316
L + I ++P F L + + + + L Y+ + +
Sbjct: 124 -SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 317 AISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AY 375
++ +P L L H K +++ LL S + L + +R I ++
Sbjct: 183 KLTGIPKD-LPET-LNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239
Query: 376 LSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC----------LKY 425
L +L L+L N +PA + + L+ ++L N + + C
Sbjct: 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNG 298
Query: 426 LHLID 430
+ L +
Sbjct: 299 ISLFN 303
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 60/241 (24%), Positives = 93/241 (38%), Gaps = 34/241 (14%)
Query: 291 DCS--KLDNLPDNI-GSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESF 345
CS L +P I L L + IS+L + L +L + K +
Sbjct: 39 QCSDLGLKAVPKEISPDTTLLD--LQN-NDISELRKD-DFKGLQHLYALVLVNNK-ISKI 93
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRF 404
L + L+IS + EIP + SSL L + N +P + + +
Sbjct: 94 HEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151
Query: 405 IHLEDFNMLQSLPELP-----LCLKYLHLIDCKMLQSLPV-LPFCLESLDLTGCNMLRSL 458
I + N L++ P L L YL + + K L +P LP L L L N ++++
Sbjct: 152 IEMGG-NPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDLPETLNELHLDH-NKIQAI 208
Query: 459 PELPL----CLQYLNLEDCNMLRSLPE-----LPLCLQLLTVRNCNRLQSLPEILLCLQE 509
L L L L N +R + LP L+ L + N N+L +P L L+
Sbjct: 209 ELEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLP-TLRELHLDN-NKLSRVPAGLPDLKL 265
Query: 510 L 510
L
Sbjct: 266 L 266
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 41/233 (17%)
Query: 191 TRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCK-RLKRISTSFCKLRSLVTLILLGCLNL 248
L + + I +VP + L ++ +++ G L L + L
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KL 184
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEY 307
P+ L E L ++ D I + L L + ++ + +
Sbjct: 185 TGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENG------ 235
Query: 308 LYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR 367
++S LP+ LR L + K L P L + ++++ +
Sbjct: 236 ---------SLSFLPT-------LRELHLDNNK-LSRVPAGLP-DLKLLQVVYLHTNNIT 277
Query: 368 EIPQEI-------AYLSSLEILYLSGNNFESL---PAIIKQMSQLRFIHLEDF 410
++ + + L N PA + ++ I ++
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 43/272 (15%), Positives = 82/272 (30%), Gaps = 72/272 (26%)
Query: 29 LDLS--KIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL--PN 84
LDL I L F + +L L +K+
Sbjct: 59 LDLQNNDIS--ELRKDDFKGLQHL--------------------YALVLVNNKISKIHEK 96
Query: 85 GLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFK 144
L KL+ L+ L +P N P +LVEL + +
Sbjct: 97 AFSPLR-KLQKLYISKNHLVEIPPNL-PSSLVELRI------------------HDNRIR 136
Query: 145 YLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISG------KVTRLYLGQS 198
+ F G +++ + N +E K+ L + ++
Sbjct: 137 KVPKGVFSGLRNMNCI--EMGG------------NPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 199 AIEEVPSSIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGCLNLEHFPE-ILE 256
+ +P + L L L K ++ I + L L L + L
Sbjct: 183 KLTGIPKDL--PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLS 238
Query: 257 KMEHLKRIYSDRTPITELPSSFENLPGLEVLF 288
+ L+ ++ D ++ +P+ +L L+V++
Sbjct: 239 FLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY 270
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 45/265 (16%), Positives = 82/265 (30%), Gaps = 60/265 (22%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK-VQLPNGLD 87
L L K + +AF+ + L+ +S + V++P
Sbjct: 83 LVLVNNKISKIHEKAFSPLRKLQKLY--------------------ISKNHLVEIPPN-- 120
Query: 88 YLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSIQNFKY 145
LP L L +R +P F +N+ + + + +E A
Sbjct: 121 -LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK------ 173
Query: 146 LSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS 205
L+ L + L P +L L L+L + I+ +
Sbjct: 174 LNYLRISEAK-LTGIPKDL---------PE---TL----------NELHLDHNKIQAIEL 210
Query: 206 -SIECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKR 263
+ + L L L + ++ I S L +L L L L P L ++ L+
Sbjct: 211 EDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQV 268
Query: 264 IYSDRTPITELPS-SFENLPGLEVL 287
+Y IT++ F +
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKR 293
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 9e-15
Identities = 69/334 (20%), Positives = 125/334 (37%), Gaps = 47/334 (14%)
Query: 89 LPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYL 146
+P + R L ++TL + F +L EL L + V +
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS------------------AV 71
Query: 147 SALSFKGCQSLRSFPSNLHFVCPVTIN---FSYCVNLIEFPQISGKVTRLYLGQSAIEEV 203
+F +LR+ L I F+ NL T+L + ++ I +
Sbjct: 72 EPGAFNNLFNLRTL--GLRSNRLKLIPLGVFTGLSNL----------TKLDISENKIVIL 119
Query: 204 PSSI-ECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGCLNLEHFP-EILEKMEH 260
+ + L +L+ L++ L IS +F L SL L L C NL P E L +
Sbjct: 120 LDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHG 177
Query: 261 LKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS 319
L + I + SF+ L L+VL + LD + N L + ++
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
Query: 320 QLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYL 376
+P A+ ++ LR L+ S+ + + + L L + + + + + L
Sbjct: 238 AVPYL-AVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295
Query: 377 SSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 409
+ L +L +SGN +L + + L + L+
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 58/282 (20%), Positives = 101/282 (35%), Gaps = 38/282 (13%)
Query: 246 LNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNI-- 302
PE + + + + I L F + P LE L + + + +
Sbjct: 21 KRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFN 77
Query: 303 --GSLEYLYYILAAASAISQLPSSV--ALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGL 358
+L L ++ + +P V LSN L LD S K + L +
Sbjct: 78 NLFNLRTLG---LRSNRLKLIPLGVFTGLSN-LTKLDISENK-IVILLDYMFQDLYNLKS 132
Query: 359 LHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSL 416
L + D + I + L+SLE L L N S+P + + L + L + ++
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-LNINAI 191
Query: 417 PELPL----CLKYLHLIDCKMLQSLPVLPFC---LESLDLTGCNMLRSLPE-----LPLC 464
+ LK L + L ++ L SL +T CN L ++P L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVY- 249
Query: 465 LQYLNLEDCNMLRSLPELPLC----LQLLTVRNCNRLQSLPE 502
L++LNL N + ++ L LQ + + +L +
Sbjct: 250 LRFLNLSY-NPISTIEGSMLHELLRLQEIQLVG-GQLAVVEP 289
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 53/203 (26%)
Query: 191 TRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249
L L I + + L L+VL++ L ++ + +L +L + C NL
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLT 237
Query: 250 HFPE-ILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEY 307
P + + +L+ + PI+ + L L+ +
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI-------------------Q 278
Query: 308 LYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR 367
L L ++ P F GL+ + +L++S +
Sbjct: 279 LV------------------GGQLAVVE----------PYAF-RGLNYLRVLNVSGNQLT 309
Query: 368 EIPQEI-AYLSSLEILYLSGNNF 389
+ + + + +LE L L N
Sbjct: 310 TLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 52/285 (18%), Positives = 91/285 (31%), Gaps = 78/285 (27%)
Query: 25 EGIFLDLSKIKGINLD--------PRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLS 76
G+F LS + +++ F ++ NL+ L ++
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK-------------SL-------EVG 136
Query: 77 YSKVQLPNGLDYLP-------KKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQ 127
N L Y+ L L + L ++P+ L+ L LR
Sbjct: 137 D------NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL---- 186
Query: 128 PWEGEKACVPSSIQNFKYLSALSFKGCQSLRS-FPSNLHFVCPVTINFSYCVNLIEFPQI 186
N + SFK L+ S+ ++ +T N Y +NL
Sbjct: 187 --------------NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL------ 226
Query: 187 SGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLG 244
T L + + VP ++ L L L+L + I +L L + L+G
Sbjct: 227 ----TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVG 281
Query: 245 CLNLEHFPE-ILEKMEHLKRIYSDRTPITELP-SSFENLPGLEVL 287
L + +L+ + +T L S F ++ LE L
Sbjct: 282 G-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 55/285 (19%), Positives = 104/285 (36%), Gaps = 33/285 (11%)
Query: 166 FVCPVTINFSYCVN--LIEFPQ-ISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGC 221
F C + C + L + P+ + L L + I E+ + L +L L L
Sbjct: 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 222 KRLKRIST-SFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFE 279
K + +IS +F L L L L L+ PE + K L+ + IT++ F
Sbjct: 87 K-ISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPK--TLQELRVHENEITKVRKSVFN 142
Query: 280 NLPGLEVLFVED-CSKLDNLPDNI----GSLEYLYYILAAASAISQLPSSVALSNMLRSL 334
L + V+ + K + + L Y+ +A + I+ +P + L L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR--IADTN-ITTIPQG-LPPS-LTEL 197
Query: 335 DSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLP 393
K + L GL+ + L +S ++ + A L L+L+ N +P
Sbjct: 198 HLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256
Query: 394 AIIKQMSQLRFIHLEDFNMLQSLPELPLC----------LKYLHL 428
+ ++ ++L + N + ++ C + L
Sbjct: 257 GGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSL 300
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 37/243 (15%)
Query: 291 DCS--KLDNLPDNI-GSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESF 345
CS L+ +P ++ L L + I+++ N+ L +L + K +
Sbjct: 37 QCSDLGLEKVPKDLPPDTALLD--LQN-NKITEIKDG-DFKNLKNLHTLILINNK-ISKI 91
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRF 404
L + L++S ++E+P+++ +L+ L + N + + ++Q+
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 405 IHLEDFNMLQSLP-------ELPLCLKYLHLIDCKMLQSLPV-LPFCLESLDLTGCNMLR 456
+ L N L+S + L Y+ + D + ++P LP L L L G N +
Sbjct: 150 VELGT-NPLKSSGIENGAFQGMK-KLSYIRIADTN-ITTIPQGLPPSLTELHLDG-NKIT 205
Query: 457 SLPELPL----CLQYLNLEDCNMLRSLPE-----LPLCLQLLTVRNCNRLQSLPEILLCL 507
+ L L L L N + ++ P L+ L + N N+L +P L
Sbjct: 206 KVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPH-LRELHLNN-NKLVKVPGGLADH 262
Query: 508 QEL 510
+ +
Sbjct: 263 KYI 265
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 30/210 (14%), Positives = 75/210 (35%), Gaps = 17/210 (8%)
Query: 191 TRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCK-RLKRIS-TSFCKLRSLVTLILLGCLN 247
L + ++ I +V S+ L + V++L + I +F ++ L + + N
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-N 182
Query: 248 LEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNI-GSL 305
+ P+ L L ++ D IT++ + S + L L L + + + + +
Sbjct: 183 ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANT 239
Query: 306 EYLYYILAAASAISQLPSSVALSNMLRSLDSSHCK----GLESF-PRTFLLGLSAMGLLH 360
+L + + + ++P +A ++ + + G F P + ++ +
Sbjct: 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
Query: 361 ISD--YAVREIPQEI-AYLSSLEILYLSGN 387
+ EI + + L
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 45/271 (16%), Positives = 83/271 (30%), Gaps = 65/271 (23%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSK-VQLPNGLD 87
L L K + P AF + L LS ++ +LP
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLY--------------------LSKNQLKELPEK-- 118
Query: 88 YLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSIQNFKY 145
+PK L+ L + + + F ++ + L + ++ A Q K
Sbjct: 119 -MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----FQGMKK 172
Query: 146 LSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS 205
LS + + + P L P + T L+L + I +V +
Sbjct: 173 LSYIRIADTN-ITTIPQGL------------------PPSL----TELHLDGNKITKVDA 209
Query: 206 -SIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKR 263
S++ L +L L L + + S L L L L P L ++++
Sbjct: 210 ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQV 267
Query: 264 IYSDRTPITELPSS-------FENLPGLEVL 287
+Y I+ + S+ +
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 46/276 (16%), Positives = 85/276 (30%), Gaps = 73/276 (26%)
Query: 29 LDLS--KIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL--PN 84
LDL KI + F N+ NL L +K+ P
Sbjct: 57 LDLQNNKIT--EIKDGDFKNLKNL--------------------HTLILINNKISKISPG 94
Query: 85 GLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFK 144
L KL L+ L+ LP PK L EL +
Sbjct: 95 AFAPLV-KLERLYLSKNQLKELPEKM-PKTLQELRV------------------HENEIT 134
Query: 145 YLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS-------GKVTRLYLGQ 197
+ F G + L N ++ I K++ + +
Sbjct: 135 KVRKSVFNGLNQMIVV--ELGT------------NPLKSSGIENGAFQGMKKLSYIRIAD 180
Query: 198 SAIEEVPSSIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGCLNLEHFPE-IL 255
+ I +P + L L L G ++ ++ S L +L L L ++ L
Sbjct: 181 TNITTIPQGL--PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSL 236
Query: 256 EKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVED 291
HL+ ++ + + ++P + ++V+++ +
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 5e-14
Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 34/237 (14%)
Query: 291 DCS--KLDNLPDNI-GSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCK-GLES 344
C+ L ++P I S L ++ + LP + L L S +
Sbjct: 13 RCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKG 68
Query: 345 FPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA--IIKQMSQL 402
G +++ L +S V + L LE L +N + + + + L
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 403 RFIHLEDFNMLQSLPE-----LPLCLKYLHLIDCKMLQSLPVLPFC----LESLDLTGCN 453
++ + + L L+ L + ++ F L LDL+
Sbjct: 129 IYLDISH-THTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-C 185
Query: 454 MLRSLPELPL----CLQYLNLEDCNMLRSLPELPLC----LQLLTVRNCNRLQSLPE 502
L L LQ LN+ N SL P LQ+L N + + +
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKK 240
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 60/320 (18%), Positives = 103/320 (32%), Gaps = 94/320 (29%)
Query: 103 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS 162
L ++P+ P + L L +K + L F L
Sbjct: 19 LTSVPTGI-PSSATRLELESNK------------------LQSLPHGVFDKLTQLT---- 55
Query: 163 NLHFVCPVTINFSYCVNLIEFPQISGKV-------TRLYLGQSAIEEVPSSIECLTDLEV 215
++ S N + F + L L + + + S+ L LE
Sbjct: 56 --------KLSLSS--NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105
Query: 216 LDLRGCKRLKRIS--TSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITE 273
LD + LK++S + F LR+L+ L + T
Sbjct: 106 LDFQHS-NLKQMSEFSVFLSLRNLIYLDI------------------------SHTHTRV 140
Query: 274 LPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLR 332
+ F L LEVL + S +N + ++L + L
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPD---------------IFTELRN-------LT 178
Query: 333 SLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFES 391
LD S C+ LE T LS++ +L++S + L+SL++L S N+ +
Sbjct: 179 FLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Query: 392 LP--AIIKQMSQLRFIHLED 409
+ S L F++L
Sbjct: 238 SKKQELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 52/294 (17%), Positives = 86/294 (29%), Gaps = 85/294 (28%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSY---SKVQLPNG 85
L+L K +L F ++ L KL LS S +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQL-------------TKL-------SLSSNGLSFKGCCSQ 72
Query: 86 LDYLPKKLRYLHWDTYPLRTLPSNFKP-KNLVELNLRCSKVEQPWEGEKACVPSSIQNFK 144
D+ L+YL + T+ SNF + L L+ + S ++Q E
Sbjct: 73 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS------------ 120
Query: 145 YLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP 204
F ++L L + +
Sbjct: 121 -----VFLSLRNLI---------------------------------YLDISHTHTRVAF 142
Query: 205 SSI-ECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVTLILLGCLNLEHFPE-ILEKMEHL 261
+ I L+ LEVL + G + F +LR+L L L C LE + L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL 201
Query: 262 KRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNI-----GSLEYLY 309
+ + L + ++ L L+VL + + SL +L
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLN 254
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 43/235 (18%)
Query: 261 LKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLP----DNIGSLEYLYYILAAA 315
+RI+ I+ +P+ SF L +L++ L + + LE L L+
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLD--LSDN 90
Query: 316 SAISQLPSSV--ALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI 373
+ + + + L L +L C L+ GL+A+ L++ D A++ +P +
Sbjct: 91 AQLRSVDPATFHGLGR-LHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 374 -AYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDC 431
L +L L+L GN S+P + + L + L N + +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ-NRVAHVHP------------- 194
Query: 432 KMLQSLPVLPFCLESLDLTGCNMLRSLPELPL----CLQYLNLE------DCNML 476
+ L L +L L N L +LP L LQYL L DC
Sbjct: 195 HAFRDLGR----LMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 27/155 (17%)
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPE-----LP 420
+ +P I ++ + ++L GN +PA + L + L N+L + L
Sbjct: 24 QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLA 80
Query: 421 LCLKYLHLIDCKMLQSLPVLPF----CLESLDLTGCNMLRSLPE-----LPLCLQYLNLE 471
L L+ L L D L+S+ F L +L L L+ L L LQYL L+
Sbjct: 81 L-LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR-CGLQELGPGLFRGLAA-LQYLYLQ 137
Query: 472 DCNMLRSLPELPLC----LQLLTVRNCNRLQSLPE 502
D N L++LP+ L L + NR+ S+PE
Sbjct: 138 D-NALQALPDDTFRDLGNLTHLFLHG-NRISSVPE 170
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 34/240 (14%), Positives = 86/240 (35%), Gaps = 32/240 (13%)
Query: 177 CVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRIST-SFCKL 234
C ++ P + L L ++ + +PS + L ++ + + L+++ + SF L
Sbjct: 20 CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79
Query: 235 RSLVTLILLGCLNLEHFP-EILEKMEHLKRIYSDRTPITELP--SSFENLPGLEVLFVED 291
+ + + NL + + L+++ LK + T + P + + +L + D
Sbjct: 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139
Query: 292 CSKLDNLPDNI-GSLEYLYYILAAAS-AISQLPSSV-ALSNMLRSLDSSHCKGLESFPRT 348
+ ++P N L L + + + + L ++ + K L +
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKD 198
Query: 349 FLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHL 407
G+ S +L +S + +LP+ ++ + +L +
Sbjct: 199 AFGGVY----------------------SGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 38/229 (16%), Positives = 70/229 (30%), Gaps = 36/229 (15%)
Query: 291 DCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRT 348
C + +P S + L L + + +PS A SN+ + + S L+
Sbjct: 19 TCKDIQRIPSLPPSTQTLK--LIE-THLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESH 74
Query: 349 FLLGLSAMGLLHISDY-AVREIPQEI-AYLSSLEILYLSGNNFESLPAI--IKQMSQLRF 404
LS + + I + + I + L L+ L + + P + +
Sbjct: 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI 134
Query: 405 IHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPEL--- 461
+ + D + S+P Q L +L L N S+
Sbjct: 135 LEITDNPYMTSIPV-------------NAFQGLCNE---TLTLKLYN-NGFTSVQGYAFN 177
Query: 462 PLCLQYLNLEDCNMLRSLPE-----LPLCLQLLTVRNCNRLQSLPEILL 505
L + L L + + + LL V + +LP L
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKGL 225
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 55/394 (13%), Positives = 101/394 (25%), Gaps = 82/394 (20%)
Query: 146 LSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS 205
++ L +L ++ + L T L + + ++
Sbjct: 76 ITTLDLSQNTNLTYL--ACDSNKLTNLDVTPLTKL----------TYLNCDTNKLTKLDV 123
Query: 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY 265
S L L+ L I S L L + + L +
Sbjct: 124 SQ--NPLLTYLNCARNT-LTEIDVS--HNTQLTELDCHLNKKIT--KLDVTPQTQLTTLD 176
Query: 266 SDRTPITELPSSFENLPGLEVLFVEDCSKLDNLP-DNIGSLEYLYYILAAASAISQLPSS 324
ITEL L L + + L + L +L S
Sbjct: 177 CSFNKITELD--VSQNKLLNRLNCDTN-NITKLDLNQNIQLTFLD--------CS----- 220
Query: 325 VALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYL 384
SN L +D + L S + E+ LS L L+
Sbjct: 221 ---SNKLTEIDVTPLTQLTY--------------FDCSVNPLTELDVST--LSKLTTLHC 261
Query: 385 SGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLKYLHL-------IDCKMLQS 436
+ + + +QL + E ++ L L L +D
Sbjct: 262 IQTDLLEID--LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319
Query: 437 LPVLPFC----LESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVR 492
L L + L LD++ L+ L+ + ++ + L
Sbjct: 320 LVYL-YLNNTELTELDVSHNTK----------LKSLSCVN-AHIQDFSSVGKIPALNNNF 367
Query: 493 NC-NRLQSLPEILLCLQELDASVLEKLSKHSPDL 525
+ ++P+ L L +V L +
Sbjct: 368 EAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 51/339 (15%), Positives = 104/339 (30%), Gaps = 57/339 (16%)
Query: 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQ-PWEGEKACVPSSIQNFKYLSAL 149
KL YL+ DT L L + + L LN + + + K ++ L
Sbjct: 106 TKLTYLNCDTNKLTKLDVS-QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL 164
Query: 150 SFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIEC 209
L + + F ++ S L RL + I ++ +
Sbjct: 165 DVTPQTQLTTL--DCSFNKITELDVSQNKLL----------NRLNCDTNNITKLD--LNQ 210
Query: 210 LTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269
L LD K L I L L L + + L ++ +T
Sbjct: 211 NIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQT 264
Query: 270 PITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 329
+ E+ + + L E C K+ L ++ LY + +
Sbjct: 265 DLLEIDLT--HNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQ-------------AA 307
Query: 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNF 389
+ LD S L L++++ + E+ +++ + L+ L +
Sbjct: 308 GITELDLSQNPKLVY--------------LYLNNTELTELD--VSHNTKLKSLSCVNAHI 351
Query: 390 ESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHL 428
+ + + ++ L + ++P+ L L +
Sbjct: 352 QDFSS-VGKIPALNNNFEAE-GQTITMPKETLTNNSLTI 388
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 38/190 (20%), Positives = 60/190 (31%), Gaps = 26/190 (13%)
Query: 329 NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNN 388
++ L S L + ++ I L+ L L + NN
Sbjct: 31 QATDTISEEQLATLTS------LDCHNSSITDMT---------GIEKLTGLTKLICTSNN 75
Query: 389 FESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC-LKYLHLIDCKMLQSLPVLPF-CLES 446
+L + Q + L ++ + N L +L PL L YL+ K L L V L
Sbjct: 76 ITTLD--LSQNTNLTYLACDS-NKLTNLDVTPLTKLTYLNCDTNK-LTKLDVSQNPLLTY 131
Query: 447 LDLTGCNMLRSLPELPL-CLQYLNLEDCNMLRSLPELPL-CLQLLTVRNCNRLQSLP-EI 503
L+ N L + L L+ + L P L L N++ L
Sbjct: 132 LNCAR-NTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF-NKITELDVSQ 189
Query: 504 LLCLQELDAS 513
L L+
Sbjct: 190 NKLLNRLNCD 199
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 3e-12
Identities = 41/230 (17%), Positives = 93/230 (40%), Gaps = 24/230 (10%)
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
+ + L + ++ + + L ++ + +K + L ++ L L G L
Sbjct: 22 ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KL 77
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDC--SKLDNLPDNIGSLE 306
+ L +++L ++ D I +L SS ++L L+ L +E S ++ L ++ LE
Sbjct: 78 TDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDINGL-VHLPQLE 134
Query: 307 YLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366
LY + I+ + L+ L +L + + L GL+ + L++S +
Sbjct: 135 SLY---LGNNKITDITVLSRLTK-LDTLSLEDNQ-ISDIV--PLAGLTKLQNLYLSKNHI 187
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSL 416
++ + +A L +L++L L +L N +++
Sbjct: 188 SDL-RALAGLKNLDVLELFSQE-------CLNKPINHQSNLVVPNTVKNT 229
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 81/344 (23%), Positives = 121/344 (35%), Gaps = 48/344 (13%)
Query: 187 SGKVTRLYLG----QSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLIL 242
KVT + L V SS+ LT LE L L +S F SL +L L
Sbjct: 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDL 107
Query: 243 LGCLNLEHFPEILE-----KMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCS---- 293
+ ++ L + S+ S L LEVL + S
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFL-NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 294 --KLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLL 351
L D G L++L ++ + S N L LD S P FL
Sbjct: 167 NVVGWVLSDGCGELKHLA--ISGNKISGDVDVS-RCVN-LEFLDVSSNNFSTGIP--FLG 220
Query: 352 GLSAMGLLHISDYAVR-EIPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLED 409
SA+ L IS + + + I+ + L++L +S N F +P + + L+++ L +
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAE 278
Query: 410 FNMLQ-SLPE-----LPLCLKYLHLIDCKMLQSLPV----LPFCLESLDLTGCNMLRSLP 459
N +P+ L L L ++P LESL L+ N LP
Sbjct: 279 -NKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSL-LESLALSSNNFSGELP 335
Query: 460 ELPLC----LQYLNLEDCNMLRSLPE----LPLCLQLLTVRNCN 495
L L+ L+L LPE L L L + + N
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 13/236 (5%)
Query: 202 EVPSSIECLTDLEVLDLRGCKRLK-RISTSFCKLRSLVTLILLGCLNLE-HFPEILEKME 259
++P ++ ++L L L L I +S L L L L LE P+ L ++
Sbjct: 409 KIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVK 466
Query: 260 HLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAI 318
L+ + D +T E+PS N L + + + +P IG LE L + + ++
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 319 S-QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLS 377
S +P+ + L LD + + P + I+ + I
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG----KRYVYIKNDG 582
Query: 378 SLEILYLSGNNFE---SLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLID 430
+ + +GN E + ++S ++ + +D
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 6e-10
Identities = 68/375 (18%), Positives = 124/375 (33%), Gaps = 66/375 (17%)
Query: 106 LPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQ---NFKYLSALSFKGCQSLRSFP- 161
+ K +L L+L + + L L+ G +
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGA-------NVVGWVLSDGCGELKHLAISGNKISGDVDV 196
Query: 162 SNLHFVCPVTINFSYCVNLI-EFPQISG--KVTRLYLGQSAIE-EVPSSIECLTDLEVLD 217
S + ++ S N P + + L + + + + +I T+L++L+
Sbjct: 197 SRCVNL--EFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 218 LRG-----------CKRLKRISTSFCKL------------RSLVTLILLGCLNLE-HFPE 253
+ K L+ +S + K +L L L G + P
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPP 312
Query: 254 ILEKMEHLKRIYSDRTPIT-ELP-SSFENLPGLEVLFVEDCSKLDNLPDNIG----SLEY 307
L+ + + ELP + + GL+VL + LP+++ SL
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 308 LYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD-Y 364
L L++ + + ++ + L+ L + P L S + LH+S Y
Sbjct: 373 LD--LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNY 429
Query: 365 AVREIPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNMLQ-SLPELPLC 422
IP + LS L L L N E +P + + L + L DFN L +P
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL-DFNDLTGEIPS---- 484
Query: 423 LKYLHLIDCKMLQSL 437
L +C L +
Sbjct: 485 ----GLSNCTNLNWI 495
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 9e-10
Identities = 70/388 (18%), Positives = 123/388 (31%), Gaps = 74/388 (19%)
Query: 114 NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTIN 173
+ ++L P + V SS+ + L +L S +++
Sbjct: 51 KVTSIDLSSK----PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106
Query: 174 FSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTS-FC 232
S +SG VT +S+ + L+ L++ S
Sbjct: 107 LSRN-------SLSGPVT-----------TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148
Query: 233 KLRSLVTLILLGC-LNLEHFPEI--LEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLF 288
KL SL L L ++ + + LK + I+ ++ S LE L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLD 206
Query: 289 VEDCSKLDNLPD--NIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP 346
V + +P + +L++L ++ +++ L+ L+ S +
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLD--ISGNKLSGDFSRAISTCTELKLLNISSNQ------ 258
Query: 347 RTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE-SLPA-IIKQMSQLRF 404
+G IP L SL+ L L+ N F +P + L
Sbjct: 259 ---FVG---------------PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 405 IHLEDFNMLQ-SLP-ELPLC--LKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLR 456
+ L N ++P C L+ L L LP+ L+ LDL+
Sbjct: 299 LDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 457 SLPE----LPLCLQYLNLEDCNMLRSLP 480
LPE L L L+L N +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPIL 385
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 3e-09
Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 13/208 (6%)
Query: 202 EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE-HFPEILEKMEH 260
E+PS + T+L + L + I +L +L L L + + P L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRS 539
Query: 261 LKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS 319
L + + +P++ G I + A + +
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA----GKRYVYIKNDGMKKECHGAGNLLE 595
Query: 320 ---QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR-EIPQEIAY 375
+ + + + TF +M L +S + IP+EI
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 376 LSSLEILYLSGNNFE-SLPAIIKQMSQL 402
+ L IL L N+ S+P + + L
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGL 682
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 47/315 (14%), Positives = 86/315 (27%), Gaps = 77/315 (24%)
Query: 136 VPSSIQNFKYLSAL-------------SFKGCQSLRSFP-SNLHFVCPVTINFSYCVNLI 181
+PSS+ + L L ++L + + S C NL
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL- 492
Query: 182 EFPQISGKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTL 240
+ L + + E+P I L +L +L L I RSL+ L
Sbjct: 493 ---------NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 241 IL------------LGCLNLE--------HFPEILEKMEHLKRIYSDRTPIT---ELPSS 277
L + + + ++ K + +
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 278 FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS-QLPSSVALSNMLRSLDS 336
L + + + + ++ + + +S +P + L L+
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 337 SHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAII 396
H + G IP E+ L L IL LS N + I
Sbjct: 664 GH---------NDISG---------------SIPDEVGDLRGLNILDLSSNKLDG--RIP 697
Query: 397 KQMSQLRFIHLEDFN 411
+ MS L L + +
Sbjct: 698 QAMSALTM--LTEID 710
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 31/232 (13%)
Query: 188 GKVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRISTS--FCKLRSLVTLILLG 244
G + L L + + + SS + L+ L L+L G K + + F L L L +
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGN 158
Query: 245 CLNLEHFPE-ILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLP--- 299
+ L+ + D + + S +++ + L + + L
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIF 217
Query: 300 -DNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGL 358
D S+E L L + LD+ H L + L+
Sbjct: 218 VDVTSSVECLE-----------------LRDT--DLDTFHFSELSTGETNSLIKKFTFRN 258
Query: 359 LHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 409
+ I+D ++ ++ + + +S L L S N +S+P I +++ L+ I L
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 6e-08
Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 53/258 (20%)
Query: 291 DCS--KLDNLPDNI-GSLEYLYYILAAASAISQLPSSV--ALSNMLRSLDSSHCKGLESF 345
S L+++P + +++ L + + I+ + +S N L++L + + +
Sbjct: 37 KGSSGSLNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVN-LQALVLTSNG-INTI 91
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA---------- 394
L ++ L +S + + LSSL L L GN +++L
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 395 ---IIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFC----LESL 447
+ M I +DF L L+ L + LQS + L
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTF-------LEELEIDASD-LQSYEPKSLKSIQNVSHL 203
Query: 448 DLTGCNMLRSLPEL---------PLCLQYLNLEDCNMLRSLPELP--LCLQLLTVRN--- 493
L L E+ L L+ +L+ + L ++ T RN
Sbjct: 204 ILHM-KQHILLLEIFVDVTSSVECLELRDTDLDTFH-FSELSTGETNSLIKKFTFRNVKI 261
Query: 494 -CNRLQSLPEILLCLQEL 510
L + ++L + L
Sbjct: 262 TDESLFQVMKLLNQISGL 279
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 43/301 (14%), Positives = 84/301 (27%), Gaps = 70/301 (23%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQ-LPNGL- 86
LDLS + + NL L+ + + +
Sbjct: 57 LDLSNNRITYISNSDLQRCVNL--------------------QALVLTSNGINTIEEDSF 96
Query: 87 DYLPKKLRYLHWDTYPLRTLPSN-FKP-KNLVELNLRCSKVEQPWEGEKACVPSSI--QN 142
L L +L L L S+ FKP +L LNL + + + + +
Sbjct: 97 SSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--------TLGETSLFSH 147
Query: 143 FKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202
L L + F+ L L + S ++
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKD---------FAGLTFL----------EELEIDASDLQS 188
Query: 203 VPS-SIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLIL----LGCLNLEHFPEI-- 254
S++ + ++ L L + + S+ L L L +
Sbjct: 189 YEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247
Query: 255 --LEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLP----DNIGSLEYL 308
L K + + + ++ + GL L +L ++P D + SL+ +
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKI 306
Query: 309 Y 309
+
Sbjct: 307 W 307
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 54/306 (17%), Positives = 106/306 (34%), Gaps = 31/306 (10%)
Query: 260 HLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLP----DNIGSLEYLYYILAA 314
+ + T + + +F LE + + L+ + N+ L + +
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR--IEK 88
Query: 315 ASAISQLPSSV--ALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD-YAVREIPQ 371
A+ + + L N L+ L S+ ++ P + LL I D + I +
Sbjct: 89 ANNLLYINPEAFQNLPN-LQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146
Query: 372 E-IAYLSS-LEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPL----CLKY 425
LS IL+L+ N + + +QL ++L D N L+ LP
Sbjct: 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206
Query: 426 LHLIDCKMLQSLPVLPF-CLESLDLTGCNMLRSLPELPLC--LQYLNLE-----DC--NM 475
L + + + SLP L+ L L+ LP L L +L N
Sbjct: 207 LDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANW 265
Query: 476 LRSLPEL-PLCLQLLTVRNCNRL-QSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLK 533
R + EL P+C + + + + + Q+ + ++ ++S + + +
Sbjct: 266 RRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEV 325
Query: 534 SAAICF 539
C
Sbjct: 326 VDVTCS 331
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 8e-11
Identities = 41/256 (16%), Positives = 88/256 (34%), Gaps = 44/256 (17%)
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
++ G+S + + + L + L G + I L +L+ L L +
Sbjct: 20 NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-QI 75
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDC--SKLDNLPDNIGSLE 306
L+ + + + P+ + S+ L ++ L + + + L + +L+
Sbjct: 76 TDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPL-AGLSNLQ 132
Query: 307 YLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366
LY + I+ + L+N L+ L + + +SD
Sbjct: 133 VLY---LDLNQITNISPLAGLTN-LQYLSIGNAQ--------------------VSDL-- 166
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC--LK 424
+A LS L L N + + + L +HL++ N + + L L
Sbjct: 167 ----TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKN-NQISDVSPLANTSNLF 220
Query: 425 YLHLIDCKMLQSLPVL 440
+ L + + + PV
Sbjct: 221 IVTLTNQT-ITNQPVF 235
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 53/286 (18%), Positives = 99/286 (34%), Gaps = 66/286 (23%)
Query: 113 KNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTI 172
N +++ S V + + ++ LS G + +
Sbjct: 19 ANAIKIAAGKSNVTDT---------VTQADLDGITTLSAFGTG-VTTIE----------- 57
Query: 173 NFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFC 232
Y NL L L + I ++ + ++ LT + L+L G LK +S +
Sbjct: 58 GVQYLNNL----------IGLELKDNQITDL-APLKNLTKITELELSGNP-LKNVS-AIA 104
Query: 233 KLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDC 292
L+S+ TL L L + +L+ +Y D IT + S L L+ L + +
Sbjct: 105 GLQSIKTLDLTS--TQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNA 161
Query: 293 SKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLG 352
++ +L + +L L + A + IS + +L N L + + +
Sbjct: 162 -QVSDL-TPLANLSKLTTLKADDNKISDISPLASLPN-LIEVHLKNNQ------------ 206
Query: 353 LSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQ 398
ISD +A S+L I+ L+ + P
Sbjct: 207 --------ISDV------SPLANTSNLFIVTLTNQTITNQPVFYNN 238
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 8e-11
Identities = 87/551 (15%), Positives = 163/551 (29%), Gaps = 169/551 (30%)
Query: 281 LPGLEVLFVED--CSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSH 338
L E FV++ C + ++P +I S E + +I+ + A+S + +L S
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG------TLRLFWTLLSKQ 75
Query: 339 CKGLESFPRTFLLGLSAMGLLHISDY-----AVREIPQE-----IAYLSSLEILYLSGNN 388
+ ++ F + + +Y ++ ++ Y+ + LY
Sbjct: 76 EEMVQKF----------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 389 FESLP-AIIKQMSQLRFIHLEDFNMLQSL-PELPLCL-------K--------------- 424
F + ++ +LR L L P + + K
Sbjct: 126 FAKYNVSRLQPYLKLR-------QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 425 -------YLHLIDC-------KMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 470
+L+L +C +MLQ L L +D + + L + +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKL------LYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 471 EDCNMLRSLPELPLCLQLL-TVRNCNRLQSLP---EILLCLQELDASVLEKLS----KHS 522
E +L+S CL +L V+N + +ILL + V + LS H
Sbjct: 233 ELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR--FKQVTDFLSAATTTHI 289
Query: 523 P--DLQWAPESLKSAAICFEFTNC----LKLNGKANN--------KILADSLLRI---RH 565
+ ++ ++ +C L N + + D L +H
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 566 MAIASLRLGYEMAINE-KLSELRG---SLIVLP-GSEIPD------WFSNQSSGSSICIQ 614
+ L E ++N + +E R L V P + IP WF S + +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 615 LPPHSSCRNLIGFAFCAVLDSKKVDSDCFRYFYVSFQFDLEIKTLSETK-HVDLGYNSRY 673
K+ S +L++K +E H
Sbjct: 410 -----KLHKY----SLVEKQPKE-----STISIPSIYLELKVKLENEYALH--------- 446
Query: 674 IEDLIDSDRVILGFKPCLNVGFP---DGY------HHTIAT-----FKFFAERKFY---- 715
++D + F + P D Y HH F R +
Sbjct: 447 -RSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVFLDFR 501
Query: 716 ----KIKRCGL 722
KI+
Sbjct: 502 FLEQKIRHDST 512
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 1e-10
Identities = 85/581 (14%), Positives = 183/581 (31%), Gaps = 128/581 (22%)
Query: 7 RLTHSLFLF--FFYKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE 64
++ +L LF K + ++ F++ + + ++ +KF + +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQ-KFVE----EVLRIN------------YKFLMSPIKTEQ 102
Query: 65 KLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSK 124
+ PSM T + +L N K LR +P V +
Sbjct: 103 RQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI------ 155
Query: 125 VEQPWEGEKAC-----VPSSIQNFKYLSA-------LSFKGCQSLRSFPSNL-----HFV 167
+G ++K L+ K C S + L
Sbjct: 156 -----DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 168 CPVTINFSYCVNL-IEFPQISGKVTRLYLGQSAIEEVPSSIECLTD------LEVLDLRG 220
T + N+ + I ++ RL + + + L + +L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENCLLVLLNVQNAKAWNAFNL-S 265
Query: 221 CKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD--RTPITELPSSF 278
CK L ++T F ++ ++ ++L+H L E +K + +LP
Sbjct: 266 CKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREV 322
Query: 279 ENL-PGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALS-NMLRSLDS 336
P + E DN + + +L + + S N+L +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN-----WKHV------NCDKLTTIIESSLNVLEPAEY 371
Query: 337 SHC-KGLESFPRTFLLGLSAMGLL--HISDYAVREIPQEIAYLSSLEILYLSGNNFE--- 390
L FP + + + L+ + V + ++ S +E E
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-----KQPKESTI 426
Query: 391 SLPAII----KQMSQLRFIH---LEDFNMLQSLP---ELPLCL-----KYL--HLIDCKM 433
S+P+I ++ +H ++ +N+ ++ +P L ++ HL + +
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 434 LQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVR- 492
+ + + LD L Q + + S L QL +
Sbjct: 487 PERMTLFRMVF--LDF---RFLE---------QKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 493 ----NCNRL-QSLPEILLCLQELDASVLEKLSKHSPDLQWA 528
N + + + IL L +++ +++ SK++ L+ A
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLIC--SKYTDLLRIA 571
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 20/240 (8%)
Query: 203 VPSSIECLTDLEVLDLRGCK--RLKRISTSFCKLRSLVTLILLGCLNLE-HFPEILEKME 259
+ + + LDL G + I +S L L L + G NL P + K+
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 260 HLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAI 318
L +Y T ++ +P + L L + LP +I SL L I + I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 319 S-QLPSSVA-LSNMLRSLDSSHCKGLE-SFPRTFLLGLSAMGLLHISDYAVR-EIPQEIA 374
S +P S S + S+ S + L P T + + +S + +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT--FANLNLAFVDLSRNMLEGDASVLFG 218
Query: 375 YLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNML-----QSLPELPLCLKYLHL 428
+ + ++L+ N+ L + L + L N + Q L +L L L++
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDL-RNNRIYGTLPQGLTQLKF-LHSLNV 275
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 41/359 (11%)
Query: 191 TRLYLGQSAIEEVPSSIE--CLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCLN 247
L L + + +P E LT L L L + +++ L L+ L +
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLDLLPVAHLHLSCILLDLVSYH 182
Query: 248 LEHFPEILEKMEHLKRIYSDRTPITELPS----SFENLPGLEV----LFVEDCSKLDNLP 299
++ ++ + ++ P + S L L++ L E+C +L
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242
Query: 300 DNIGSLEYLYYILAAASAISQLPSSVALSNM----LRSLDSSHCKGLESFPRTFL----L 351
+ L + + S + L+ + E R
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302
Query: 352 GLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAII-KQMSQLRFIHLED 409
L ++ + H+ + + + + + + I LS ++ + + S F++
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362
Query: 410 FNMLQSLP-ELPLCLKYLHLIDCKM--LQSLPVLPFCLESLDLTGC--NMLRSLP----- 459
N+ + LK L + + L++ + +++ L SL
Sbjct: 363 -NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421
Query: 460 ---ELPLCLQYLNLEDCNMLRSLPE-LPLCLQLLTVRNCNRLQSLPE---ILLCLQELD 511
+ LNL + S+ LP +++L + + NR+ S+P+ L LQEL+
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELN 479
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 60/418 (14%), Positives = 133/418 (31%), Gaps = 56/418 (13%)
Query: 155 QSLRSFPSNLHFVCPVTI---NFSYC-------VNLIE------FPQISGKVTRLYLGQS 198
Q + + HFVC + + + + V+ + + L L Q+
Sbjct: 3 QDRKPIVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQN 62
Query: 199 AIEEVPSS-IECLTDLEVLDLRGCKRLKRISTS-FCKLRSLVTLILLGCLN-LEHFPEIL 255
+I E+ I L++L VL L R++ + F + L L + N L++
Sbjct: 63 SISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV--SHNRLQNIS--C 117
Query: 256 EKMEHLKRIYSDRTPITELPSS--FENLPGLEVLFVE-------DCSKLDNLPDNIGSLE 306
M L+ + LP F NL L L + D + +L + L+
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177
Query: 307 YL-YYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA 365
+ Y+I + Q+P++ L + + S L LS + L +
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237
Query: 366 VREIPQEIAYLSSLEILYLSGNNFESLPAI----IKQMSQLRFIHLEDFNMLQSLPELPL 421
+ E+ +L + L ++ + ++++ + + + +
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297
Query: 422 CLKYLHLIDCKM-------LQSLPVLPFC----LESLDLTGCNMLRSLPELPLC----LQ 466
L + + + L+ + + +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI-SDTPFIHMVCPPSPSSFT 356
Query: 467 YLNLEDCNMLRSLPELPLCLQLLTVRNC--NRLQSLPEILLCLQELDASVLEKLSKHS 522
+LN S+ + L+ L N L++ ++ L + + + +S +S
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 57/298 (19%), Positives = 101/298 (33%), Gaps = 37/298 (12%)
Query: 291 DCSKL------DNLPDNIGSLEYLYYILAAASAISQLPSSV--ALSNMLRSLDSSHCKGL 342
D S +LP +L L ++IS+L LS LR L SH + +
Sbjct: 37 DYSNRNLTHVPKDLPPRTKAL-SLSQ-----NSISELRMPDISFLSE-LRVLRLSHNR-I 88
Query: 343 ESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP--AIIKQMS 400
S L + L +S ++ I ++SL L LS N+F+ LP ++
Sbjct: 89 RSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146
Query: 401 QLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKML-QSLPVLPFCLESLDLTGCNMLRSLP 459
+L F+ L + L LP+ +L I ++ + + +
Sbjct: 147 KLTFLGLSA-AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET--------ESLQIPNTT 197
Query: 460 ELPLCLQYLNLEDCNMLRSLPELPLCLQL----LTVRNCNRLQSLPEILLCLQELDASVL 515
L L +L + S+ L LQL L NC RL + L L L
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALG-HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256
Query: 516 EKLSKHSPDLQWAPESLKSAAI-CFEFTNCLKLNGKANNKILADSLLRIRHMAIASLR 572
+ + + + N + + + + S ++ + I ++
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNL-TITERIDREEFTYSETALKSLMIEHVK 313
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 53/391 (13%), Positives = 118/391 (30%), Gaps = 50/391 (12%)
Query: 40 DPRAFTNMSNLRLFKFYVPKFYEIE-------KLPSMSTEEQLSYSKVQLPNGLDYLPKK 92
+ F N++ L KF +++ L + + + K L
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197
Query: 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFK 152
+ +L + L ++ N L L L K+ S + L ++ +
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257
Query: 153 GCQ-SLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLT 211
+ + + F P + + NL + EE S L
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLT------------ITERIDREEFTYSETALK 305
Query: 212 DLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI-LEKMEHLKRIYSDRTP 270
L + ++ L + + + + +L + + + +
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364
Query: 271 ITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 329
T+ L L+ L ++ + L N + S L
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQR-NGLKNFFKVALMT-------------KNMSSLETLDV 410
Query: 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLH--ISDYAVREIPQEIAYLSSLEILYLSGN 387
L SL+S ++ + + + L ++ R +P +++L L N
Sbjct: 411 SLNSLNSHAYDRTCAWAES----ILVLNLSSNMLTGSVFRCLPP------KVKVLDLHNN 460
Query: 388 NFESLPAIIKQMSQLRFIHLEDFNMLQSLPE 418
S+P + + L+ +++ N L+S+P+
Sbjct: 461 RIMSIPKDVTHLQALQELNV-ASNQLKSVPD 490
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 64/394 (16%), Positives = 124/394 (31%), Gaps = 66/394 (16%)
Query: 28 FLDLS--KIKGINLDPRAFTNMSNLRL-FKFYVPKFYEIEKLPSMSTEE------QLSYS 78
FL LS K + ++L P A ++S + L Y K E E L +T S
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209
Query: 79 KVQLPNGLDYLP-KKLRYLHWDTYPLRTLPSNFKP--KNLVELNLRCSKVEQPWEGEKAC 135
VQ+ ++ L +L + + + L + + LN+ +E W+
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269
Query: 136 V----PSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS---- 187
P ++ + L+ F + + + I + F + +
Sbjct: 270 FQFFWPRPVEYL-NIYNLTITERIDREEFTYSETALKSLMIEHVK-NQVFLFSKEALYSV 327
Query: 188 -GKVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC 245
++ L S + + L+ + L+ L TLIL
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL--- 384
Query: 246 LNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSK-------LDNL 298
R + + L D S D
Sbjct: 385 ---------------------QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Query: 299 PDNIGSLEYLYYILAAASAISQLPSSV--ALSNMLRSLDSSHCKGLESFPRTFLLGLSAM 356
S+ L + + L SV L ++ LD + + + S P+ L A+
Sbjct: 424 CAWAESILVLN------LSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVT-HLQAL 475
Query: 357 GLLHISDYAVREIPQEI-AYLSSLEILYLSGNNF 389
L+++ ++ +P + L+SL+ ++L N +
Sbjct: 476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 51/241 (21%), Positives = 86/241 (35%), Gaps = 46/241 (19%)
Query: 261 LKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLP----DNIGSLEYLYYILAAA 315
K + P+ L S SF + P L+VL + C ++ + ++ L L L
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLI--LTGN 86
Query: 316 SAISQLPSSV--ALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI 373
I L LS+ L+ L + L S + L + L+++ ++
Sbjct: 87 P-IQSLALGAFSGLSS-LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 374 A--YLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDC 431
L++LE L LS N +S+ L+ L ++PL L L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYC----------------TDLRVLHQMPLLNLSLDLSLN 187
Query: 432 KMLQSLPVLPFC---LESLDLTGCNMLRSLPELPL----CLQYLNLE------DCNMLRS 478
+ + F L+ L L N L+S+P+ LQ + L C +
Sbjct: 188 P-MNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 245
Query: 479 L 479
L
Sbjct: 246 L 246
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 27/154 (17%)
Query: 368 EIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPE-----LPL 421
+IP + S + L LS N L + +L+ + L +Q++ + L
Sbjct: 21 KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSH 77
Query: 422 CLKYLHLIDCKMLQSLPVLPF----CLESLDLTGCNMLRSLPELPLC----LQYLNLEDC 473
L L L +QSL + F L+ L N L SL P+ L+ LN+
Sbjct: 78 -LSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH- 133
Query: 474 NMLRSLPELPLC-----LQLLTVRNCNRLQSLPE 502
N+++S L+ L + + N++QS+
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYC 166
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 64/415 (15%), Positives = 127/415 (30%), Gaps = 64/415 (15%)
Query: 149 LSFKGCQSLRSFPSNLHFVCP--VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSS 206
+ C ++ P+ + P ++ + +F + G + +
Sbjct: 48 VFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADF-----NLVPDGWGGYVYPWIEAM 100
Query: 207 IECLTDLEVLDLRGCKR----LKRISTSFCKLRSLVTLILLGCLNL--EHFPEILEKMEH 260
T LE + L+ L+ I+ SF + LV L C + I +
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV---LSSCEGFSTDGLAAIAATCRN 157
Query: 261 LKRIYSDRTPITE-----LPSSFENLPGLEVLFVEDCSK------LDNLPDNIGSLEYLY 309
LK + + + + L + L L + + L+ L +L+ L
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217
Query: 310 YILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH--------- 360
L A + +L + + + L L + L ++ G
Sbjct: 218 --LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275
Query: 361 ISDYAVREIPQEIAYLSSLEILYLSGNNF--ESLPAIIKQMSQLRFIHLEDF---NMLQS 415
+ + S L L LS L ++ Q +L+ + + D+ L+
Sbjct: 276 AVPAYLPAVYS---VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332
Query: 416 LPELPLCLKYLHLIDCKMLQSLPVLPFCLESLD--LTGCNMLRSLPELPLCLQYLNLEDC 473
L L+ L + + P + + L GC L S+ L C
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-----------LYFC 381
Query: 474 NML--RSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQ 526
+ +L + +T ++ L L+ LD + +H DL+
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG-FGAIVEHCKDLR 435
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 5e-09
Identities = 61/379 (16%), Positives = 115/379 (30%), Gaps = 67/379 (17%)
Query: 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKR---------------ISTSFCKLR 235
++++G + I + ++L+G I
Sbjct: 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105
Query: 236 SLVTLILLGC-LNLEHFPEILEKMEHLKRIY-SDRTPITE--LPSSFENLPGLEVLFVED 291
L + L + + I + ++ K + S + L + L+ L + +
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165
Query: 292 CSK-------LDNLPDNIGSLEYL----YYILAAASAISQLPSSVALSNMLRSLDSSHCK 340
L + PD SL L + SA+ +L V L+SL +
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL---VTRCPNLKSLKLNRAV 222
Query: 341 GLESFPR-----TFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNN---FESL 392
LE L L G V E+ LSG L
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL-SGCKELRCLSGFWDAVPAYL 281
Query: 393 PAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGC 452
PA+ S+L ++L Y + +++ L P L+ L +
Sbjct: 282 PAVYSVCSRLTTLNLS----------------YATVQSYDLVKLLCQCPK-LQRLWVLDY 324
Query: 453 NMLRSLPELPLC---LQYLNLEDCNMLRSLPELPLCLQLLT--VRNCNRLQSLPEILLCL 507
L L L+ L + P + L Q L C +L+S+ L
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV---LYFC 381
Query: 508 QELDASVLEKLSKHSPDLQ 526
+++ + L ++++ P++
Sbjct: 382 RQMTNAALITIARNRPNMT 400
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 58/437 (13%), Positives = 124/437 (28%), Gaps = 78/437 (17%)
Query: 113 KNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGC-----QSLRSFPSNLHFV 167
L E+ L+ V C+ ++FK L C L + + +
Sbjct: 105 TWLEEIRLKRMVVT------DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158
Query: 168 CPVTINFSYCVN-----LIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCK 222
+ + S + L FP + L + A E S++E L + C
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL-------VTRCP 211
Query: 223 RLKRISTSFCKLRSLVTLILLGCLNLEHF-----------------PEILEKMEHLKRIY 265
LK + + + +L LE L + L+ +
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271
Query: 266 SDRTPITE-LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSS 324
+ LP+ + L L + + L +L + +L
Sbjct: 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS---------YDLVKLLCQCPKLQRLWVL 322
Query: 325 VALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYL 384
+ + + +S CK L + +++ + + L S+ + +
Sbjct: 323 DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFC 381
Query: 385 SGNNFESLPAIIKQMSQLRFIHLEDFNM--------------LQSLPELPLCLKYLHLID 430
+L I + + L ++ E L+ L L
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441
Query: 431 CKMLQSLPVLPFC---LESLDLTGCNM----LRSLPELPLCLQYLNLEDCN-----MLRS 478
+ + +E L + + + L+ L + DC +L +
Sbjct: 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501
Query: 479 LPELPLCLQLLTVRNCN 495
+L ++ L + +C+
Sbjct: 502 ASKLE-TMRSLWMSSCS 517
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 66/411 (16%), Positives = 127/411 (30%), Gaps = 76/411 (18%)
Query: 113 KNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFV--CP- 169
+NL EL+LR S V+ + + L +L+ S SF + V CP
Sbjct: 156 RNLKELDLRESDVDDV---SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212
Query: 170 -VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR----- 223
++ + V +E++ + ++ LE L G
Sbjct: 213 LKSLKLNRAVP--------------------LEKLATLLQRAPQLEELGTGGYTAEVRPD 252
Query: 224 -LKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT--ELPSSFEN 280
+S + + L L + P + L + + +L
Sbjct: 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312
Query: 281 LPGLEVLFVEDC---SKLDNLPDNIGSLEYL------YYILAAASAISQ--LPSSVALSN 329
P L+ L+V D + L+ L L L +++ A+++ L S
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372
Query: 330 MLRSLDSS--------------HCKGLESFPRTFLLGLSAMGL-LHISDYAVREIPQEIA 374
L S+ + + F + + L L D I +
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE--- 429
Query: 375 YLSSLEILYLSGN-NFESLPAIIKQMSQLRFIHLEDFN--------MLQSLPEL-PLCLK 424
+ L L LSG + I ++ + + +L L L ++
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489
Query: 425 YLHLIDCKMLQSLPVLPFCLESLDLTGCNM-LRSLPELPLCLQYLNLEDCN 474
D +L + L + SL ++ C++ + L + LN+E +
Sbjct: 490 DCPFGDKALLANASKLE-TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 68/364 (18%), Positives = 124/364 (34%), Gaps = 62/364 (17%)
Query: 179 NLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRIST-SFCKLRS 236
L + P++ V + L ++I E+ S L DL+ L + I +F L S
Sbjct: 21 GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80
Query: 237 LVTLILLGCLNLEHFPE-ILEKMEHLKRIYSDRTPITEL---PSSFENLPGLEVLFVEDC 292
L+ L L + +L+ + + + + F+ L LE+L + D
Sbjct: 81 LIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 293 S----KLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348
+ + + N+ L L N ++S+ +
Sbjct: 140 NIKKIQPASFFLNMRRFHVLD--LT--------------FNKVKSICEEDLLNFQG-KHF 182
Query: 349 FLLGLSAMGLLHISDYAVREIPQEIAY-LSSLEILYLSGNNFESLPAIIKQMSQLRFIHL 407
LL LS++ L +++Y + + +S+ L LSGN F+ A RF
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA-------KRFFDA 235
Query: 408 EDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPF------CLESLDLTGCNMLRSLPE- 460
+QSL L + F +++ DL+ + + +L +
Sbjct: 236 IAGTKIQSLI-LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKS 293
Query: 461 ----LPLCLQYLNLEDCNMLRSLPE-----LPLCLQLLTVRNCNRLQSLPEI----LLCL 507
L+ L L N + + + L L L + N L S+ L L
Sbjct: 294 VFSHFTD-LEQLTLAQ-NEINKIDDNAFWGLTH-LLKLNLSQ-NFLGSIDSRMFENLDKL 349
Query: 508 QELD 511
+ LD
Sbjct: 350 EVLD 353
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 9e-07
Identities = 57/309 (18%), Positives = 103/309 (33%), Gaps = 43/309 (13%)
Query: 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFY------VPKFYEIEKLPSMSTEEQLSYSKVQ 81
L + G L F +++L + + + L+++KV+
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF-HVLDLTFNKVK 167
Query: 82 -LPNG-LDYLPKK-LRYLHWDTYPLRTLPSN----------FKPKNLVELNLRCSKVEQP 128
+ L K L + L+ + FK ++ L+L +
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF--- 224
Query: 129 WEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISG 188
++ A++ QSL S NF N +
Sbjct: 225 ---------KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275
Query: 189 KVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGCL 246
V L +S I + S+ TDLE L L + +I +F L L+ L L
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQN- 333
Query: 247 NLEHFPE-ILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLP----D 300
L + E ++ L+ + I L SF LP L+ L ++ +L ++P D
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFD 392
Query: 301 NIGSLEYLY 309
+ SL+ ++
Sbjct: 393 RLTSLQKIW 401
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 39/227 (17%), Positives = 65/227 (28%), Gaps = 28/227 (12%)
Query: 342 LESFPRTFLLGLSAMGLLHISDYAVREIPQEIA--YLSSLEILYLSGNNFESLPA-IIKQ 398
+ T L + L + + + LSSL IL L N F L
Sbjct: 42 IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101
Query: 399 MSQLRFIHLEDFNMLQSLPELP-------LCLKYLHLIDCKMLQSL-PVLPF----CLES 446
++ L + L L L L+ L L D ++ + P F
Sbjct: 102 LANLEVLTL-TQCNLDGAV-LSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHV 158
Query: 447 LDLTGCNMLRSLPEL------PLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSL 500
LDLT N ++S+ E L L L+ + L N + S+
Sbjct: 159 LDLTF-NKVKSICEEDLLNFQGKHFTLLRL-SSITLQDMN--EYWLGWEKCGNPFKNTSI 214
Query: 501 PEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKL 547
+ L S+ ++ + L ++
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 49/290 (16%), Positives = 89/290 (30%), Gaps = 65/290 (22%)
Query: 189 KVTRLYLGQSAIEEV---PSSIECLTDLEVLDLRGCKRLKRIS--TSFCKLRSLVTLIL- 242
+ L L Q ++ + + LT LE+L LR +K+I + F +R L L
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLT 162
Query: 243 ------------------------LGCLNLEHFPEI---------LEKMEHLKRIYSDRT 269
L + L+ E K + +
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222
Query: 270 PITELPSS-FENLPGLEVLFVEDCSKLDNLPD-----NIGSLEYLYYILAAASAISQLPS 323
E + F + + S N+ N + + AS +
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282
Query: 324 SVALSNMLRSLDSSHCKGL-------------ESFPRTFLLGLSAMGLLHISDYAVREIP 370
S + + +L S GL+ + L++S + I
Sbjct: 283 S---KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339
Query: 371 QEI-AYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPE 418
+ L LE+L LS N+ +L + L+ + L+ N L+S+P+
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLKSVPD 388
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 9e-10
Identities = 54/281 (19%), Positives = 93/281 (33%), Gaps = 45/281 (16%)
Query: 246 LNLEHFPEILEKMEHLKRIYSDRTPITEL----PSSFENLPGLEVLFVEDCSKLDNLPDN 301
+L F +I+ K LKR+ I + GL+ L +E+ P
Sbjct: 56 ADLGQFTDII-KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114
Query: 302 IGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHI 361
+ L + + L N+ + + L+ + + L LS I
Sbjct: 115 LLEATGP-----------DL-NILNLRNVSWATRDAWLAELQQWLKPGLKVLS------I 156
Query: 362 SDYAVREIP-QEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELP 420
+ +++ +L L LS N +I + L+F L+ +
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN------ 210
Query: 421 LCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLC-----LQYLNLEDCNM 475
++ + + + L+ LDL N LR P C L LNL
Sbjct: 211 AGMETPSGVCSALAAARV----QLQGLDL-SHNSLRDAAGAPSCDWPSQLNSLNLSF-TG 264
Query: 476 LRSLPE-LPLCLQLLTVRNCNRLQSLPEILLC--LQELDAS 513
L+ +P+ LP L +L + NRL P + L
Sbjct: 265 LKQVPKGLPAKLSVLDLSY-NRLDRNPSPDELPQVGNLSLK 304
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 33/209 (15%)
Query: 291 DCS--KLDNLPDNI-GSLEYLYYILAAASAISQLPSSVALS-NMLRSLDSSHCKGLESFP 346
+C L LP ++ L+ + + + + + L L+ + L
Sbjct: 16 NCDKRNLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQ 71
Query: 347 RTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFI 405
L +G L +S ++ +P L +L +L +S N SLP ++ + +L+ +
Sbjct: 72 -VDG-TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 406 HLEDFNMLQSLPE-----LPLCLKYLHLIDCKMLQSLPVLPF----CLESLDLTGCNMLR 456
+L+ N L++LP P L+ L L + L LP L++L L N L
Sbjct: 130 YLKG-NELKTLPPGLLTPTPK-LEKLSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLY 185
Query: 457 SLPEL---PLCLQYLNLE------DCNML 476
++P+ L + L +C +L
Sbjct: 186 TIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 6e-09
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 27/151 (17%)
Query: 369 IPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLP---ELPLCLK 424
+P ++ IL+LS N + + ++L ++L+ L L LP+ L
Sbjct: 25 LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVDGTLPV-LG 80
Query: 425 YLHLIDCKMLQSLPVLPF---CLESLDLTGCNMLRSLPE-----LPLCLQYLNLEDCNML 476
L L + LQSLP+L L LD+ N L SLP L LQ L L+ N L
Sbjct: 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDV-SFNRLTSLPLGALRGLGE-LQELYLKG-NEL 136
Query: 477 RSLPE-----LPLCLQLLTVRNCNRLQSLPE 502
++LP P L+ L++ N N L LP
Sbjct: 137 KTLPPGLLTPTPK-LEKLSLAN-NNLTELPA 165
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 41/228 (17%), Positives = 71/228 (31%), Gaps = 37/228 (16%)
Query: 187 SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCL 246
+ + + +P + D +L L + L L L
Sbjct: 9 VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA- 65
Query: 247 NLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLP----DNI 302
L + + L + + LP + LP L VL V +L +LP +
Sbjct: 66 ELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGL 123
Query: 303 GSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHIS 362
G L+ LY L N L++L P + L ++
Sbjct: 124 GELQELY--LK--------------GNELKTLP----------PGLL-TPTPKLEKLSLA 156
Query: 363 DYAVREIPQEI-AYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 409
+ + E+P + L +L+ L L N+ ++P L F L
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 2e-09
Identities = 47/272 (17%), Positives = 87/272 (31%), Gaps = 28/272 (10%)
Query: 201 EEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSL---VTLILLGCLNLEHFPEILEK 257
+++P + + C LK +C+ + + L LE
Sbjct: 311 DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELES 370
Query: 258 MEHLKRIYSDRTPI-TELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAAS 316
+ L+ + + + L L E L + + Y +
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLYE-KETLQYFSTL-KAVDPMRAAYLDDLRSK 428
Query: 317 AISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYL 376
+ + +R L +H L L L + L +S +R +P +A L
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKD-LTVLC--HLEQLLLVTHLDLSHNRLRALPPALAAL 485
Query: 377 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQS 436
LE+L S N E++ + + +L+ + L + N LQ + + L S
Sbjct: 486 RCLEVLQASDNALENVDG-VANLPRLQELLLCN-NRLQQSAAI------------QPLVS 531
Query: 437 LPVLPFCLESLDLTGCNMLRSLPELPLCLQYL 468
P L L+L G N L + L +
Sbjct: 532 CP----RLVLLNLQG-NSLCQEEGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 8e-06
Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 19/168 (11%)
Query: 137 PSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNL----------IEFPQI 186
++Q F L A+ L S V V + + +
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ 461
Query: 187 SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCL 246
VT L L + + +P ++ L LEVL L+ + L L L+L
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN- 518
Query: 247 NLEHFPEI--LEKMEHLKRIYSDRTPITELPSS----FENLPGLEVLF 288
L+ I L L + + + E LP + +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 39/207 (18%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
+ + L + ++ + + L ++ + +K + L ++ L L G L
Sbjct: 25 ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KL 80
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDC--SKLDNLPDNIGSLE 306
+ L +++L ++ D + +L SS ++L L+ L +E S ++ L ++ LE
Sbjct: 81 TDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDINGL-VHLPQLE 137
Query: 307 YLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366
LY + I+ + L+ L +L + + L GL+ + L++S +
Sbjct: 138 SLY---LGNNKITDITVLSRLTK-LDTLSLEDNQ-ISDIV--PLAGLTKLQNLYLSKNHI 190
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLP 393
++ + +A L +L++L L + P
Sbjct: 191 SDL-RALAGLKNLDVLELFSQECLNKP 216
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 5e-09
Identities = 57/359 (15%), Positives = 97/359 (27%), Gaps = 53/359 (14%)
Query: 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS----TSFCKLRSLVTLILLGCL 246
+ + +L L L+G R + + VT I
Sbjct: 53 EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112
Query: 247 NLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLE 306
L+ H +R+ + L + LE L ++ CS + +
Sbjct: 113 QLKSV--------HFRRMIVSDLDLDRLAKAR--ADDLETLKLDKCSGF--------TTD 154
Query: 307 YLYYILAAASAISQL--PSSVALSNMLRSLD--SSHCKGLESFPRTFLLGLSAMGLLHIS 362
L I+ I L S + L + H LE L IS
Sbjct: 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV------LNFYMTEFAKIS 208
Query: 363 DYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE---- 418
+ I + SL + + L K + L N +PE
Sbjct: 209 PKDLETIAR---NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265
Query: 419 ----LPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNML--RSLPELPLC--LQYLNL 470
LC L + + L + LDL + + C L+ L
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325
Query: 471 EDCNMLRSLPELPLC---LQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQ 526
+ R L L L+ L + Q + + + L L++ +L+
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS--QRG-LIALAQGCQELE 381
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 61/410 (14%), Positives = 125/410 (30%), Gaps = 67/410 (16%)
Query: 103 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGC-----QSL 157
L L + +L LN ++ + + + +N + L ++
Sbjct: 184 LHELAQHNT--SLEVLNFYMTEFAKISP---KDLETIARNCRSLVSVKVGDFEILELVGF 238
Query: 158 RSFPSNLHFVCPVTINFSYCVNLIEFPQISG-KVTRLYLGQSAIEEVPSSIECLTDLEVL 216
+NL C ++N + + K+ RL L E+P + L
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298
Query: 217 DLRGCKRL-KRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY---------- 265
DL + T K +L L + + + + LKR+
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358
Query: 266 -SDRTPITE--LPSSFENLPGLEVLFVEDCSKLDN-----LPDNIGSLEYL-YYILAAAS 316
+ +++ L + + LE + V S + N + + +L +L
Sbjct: 359 EDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREE 417
Query: 317 AISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYL 376
I+ LP + ++L CK L F G ++D + I Q Y
Sbjct: 418 RITDLPLDNGVRSLLI-----GCKKLRRFAFYLRQGG-------LTDLGLSYIGQ---YS 462
Query: 377 SSLEILYLSGNNF--ESLPAIIKQMSQLRFIHLED--------FNMLQSLPELPLCLKYL 426
++ + L E L + L+ + + + LP L+YL
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS----LRYL 518
Query: 427 HLIDCKMLQSLPVL-----PFC-LESLDLTGCNMLRSLPELPLCLQYLNL 470
+ + + L P+ +E + + E+ ++
Sbjct: 519 WVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 25/183 (13%)
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA-IIKQMSQLR 403
L+ + L +S + I E + +L L LS N+ +L + + L
Sbjct: 56 AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115
Query: 404 FIHLEDFNMLQSLPE-----LPLCLKYLHLIDCKMLQSLPVLPFC-------LESLDLTG 451
+ L N + + + L+ L+L + + PV L LDL+
Sbjct: 116 VLLL-YNNHIVVVDRNAFEDMAQ-LQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS 172
Query: 452 CNMLRSLPE-----LP-LCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILL 505
N L+ LP LP L L + N L +L R + + E L
Sbjct: 173 -NKLKKLPLTDLQKLPAWVKNGLYLHN-NPLECDCKLYQLFSHWQYRQLSSVMDFQEDLY 230
Query: 506 CLQ 508
C+
Sbjct: 231 CMH 233
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 32/178 (17%), Positives = 68/178 (38%), Gaps = 18/178 (10%)
Query: 179 NLIEFPQ-ISGKVTRLYLGQSAIEEVPSSI--ECLTDLEVLDLRGCKRLKRIST-SFCKL 234
L PQ + L L + + + + LT+L L L L IS+ +F +
Sbjct: 29 QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPV 87
Query: 235 RSLVTLILLGCLNLEHFP-EILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDC 292
+L L L +L + ++ L+ + I + +FE++ L+ L++
Sbjct: 88 PNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 293 SKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFL 350
++ P ++ + + +L SN L+ L + + L ++ + L
Sbjct: 147 -QISRFPVE---------LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 55/363 (15%), Positives = 122/363 (33%), Gaps = 48/363 (13%)
Query: 189 KVTRLYLGQSAIEEVPSS--IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCL 246
+ L L +A + +P ++ L+ L L K L L++LG
Sbjct: 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150
Query: 247 NLEH-----FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301
E + + H+ +++ L S + + LE+ ++ + +
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFP-TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209
Query: 302 IGSLE-----------YLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFL 350
+ L L I ++ ++ V + + S+ K
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT-VWYFSISNVKLQGQLDFRDF 268
Query: 351 ----LGLSAMGLLHISDYAVREIPQEIAY--LSSLEILYLSGNNFESLPA-IIKQMSQLR 403
L A+ + + PQ Y S++ I + + + ++S
Sbjct: 269 DYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327
Query: 404 FIHLEDFNMLQSLPELPLC----LKYLHLIDCKMLQSLPVLPFC------LESLDLTGCN 453
+ N+L L+ L L + L+ L + L+ LD++ +
Sbjct: 328 HLDF-SNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 454 MLRSLPE----LPLCLQYLNLEDCNMLRSLPE--LPLCLQLLTVRNCNRLQSLPEILLCL 507
+ + L LN+ N+L LP +++L + + N+++S+P+ ++ L
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSS-NILTDTIFRCLPPRIKVLDLHS-NKIKSIPKQVVKL 443
Query: 508 QEL 510
+ L
Sbjct: 444 EAL 446
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 59/401 (14%), Positives = 129/401 (32%), Gaps = 24/401 (5%)
Query: 29 LDLS--KIKGINLDPRAFTNMSNLRLFK---FYVPKFYEIEKLPSMSTEEQLSYSKVQLP 83
LDLS K+ I+ P N+ +L L +P E + + + L S L
Sbjct: 74 LDLSHNKLVKISCHP--TVNLKHLDLSFNAFDALPICKEFGNMSQL---KFLGLSTTHLE 128
Query: 84 NGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGE-KACVPSSIQN 142
L T P+ L + N + P E + S++
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188
Query: 143 FKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202
L + K L + + N L + + T +
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNP----KLSNLTLNNIETTWNSFIRILQLV 244
Query: 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLK 262
+++ + + L+G + S L++L ++ + I E ++
Sbjct: 245 WHTTVWYF-SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303
Query: 263 RIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQL 321
+ + + L + D + +N G L L ++ + + +L
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363
Query: 322 PSSV----ALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLS 377
+ + L+ LD S + ++ L++S + +
Sbjct: 364 SKIAEMTTQMKS-LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPP 421
Query: 378 SLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE 418
+++L L N +S+P + ++ L+ +++ N L+S+P+
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNV-ASNQLKSVPD 461
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 43/209 (20%), Positives = 74/209 (35%), Gaps = 22/209 (10%)
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPE-----LP 420
+P++++ IL +S N L I +S+LR + + N +Q L
Sbjct: 13 IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILII-SHNRIQYLDISVFKFNQ 69
Query: 421 LCLKYLHLIDCKMLQSLPVLPF-CLESLDLTGCNMLRSLPELPL-----CLQYLNLEDCN 474
L+YL L K L + P L+ LDL+ N +LP L++L L
Sbjct: 70 E-LEYLDLSHNK-LVKISCHPTVNLKHLDLSF-NAFDALPICKEFGNMSQLKFLGLST-T 125
Query: 475 MLRSLPELPLCL--QLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPESL 532
L LP+ + E LQ+ + L + + + + +
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185
Query: 533 KSAAICFEFTNCLKLNGKANNKILADSLL 561
E +N +K + N S+L
Sbjct: 186 VKTVANLELSN-IKCVLEDNKCSYFLSIL 213
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 50/376 (13%), Positives = 111/376 (29%), Gaps = 28/376 (7%)
Query: 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLD 87
FL LS +++ ++ + E E + S V N
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178
Query: 88 YLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLS 147
+ L + L + L + + + N +
Sbjct: 179 HFI-----LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233
Query: 148 ALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSI 207
SF L + +F + ++ +F + L + Q +
Sbjct: 234 WNSFIRILQLVWHTTVWYFSIS-NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292
Query: 208 EC----LTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKR 263
+++ + + K+ + L L + E + L+
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Query: 264 IYSDRTPITELP---SSFENLPGLEVLFVEDCSKLDNLP----DNIGSLEYLYYILAAAS 316
+ + EL + L+ L + S + SL L
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM------ 406
Query: 317 AISQLPSSV--ALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI- 373
+ + L ++ L ++ LD K ++S P+ + L A+ L+++ ++ +P I
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVV-KLEALQELNVASNQLKSVPDGIF 464
Query: 374 AYLSSLEILYLSGNNF 389
L+SL+ ++L N +
Sbjct: 465 DRLTSLQKIWLHTNPW 480
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 25/186 (13%)
Query: 291 DCS--KLDNLPDNI-GSLEYLYYILAAASAISQLPSSV--ALSNMLRSLDSSHCKGLESF 345
DCS KL +P NI + L ++ +S LPS L+ LR L + K L++
Sbjct: 22 DCSSKKLTAIPSNIPADTKKLDL---QSNKLSSLPSKAFHRLTK-LRLLYLNDNK-LQTL 76
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA-IIKQMSQLR 403
P L + L ++D ++ +P + L +L L L N +SLP + +++L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 404 FIHLEDFNMLQSLPE-----LPLCLKYLHLIDCKMLQSLPVLPF----CLESLDLTGCNM 454
++ L N LQSLP+ L LK L L + + L+ +P F L++L L N
Sbjct: 137 YLSLGY-NELQSLPKGVFDKLTS-LKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDN-NQ 192
Query: 455 LRSLPE 460
L+ +PE
Sbjct: 193 LKRVPE 198
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 36/145 (24%)
Query: 369 IPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPE-----LPLC 422
IP I + + L L N SLP+ ++++LR ++L D N LQ+LP L
Sbjct: 31 IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELK-N 86
Query: 423 LKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPE- 481
L+ L + D K LQ+LP+ + L L L L+ N L+SLP
Sbjct: 87 LETLWVTDNK-LQALPI-------------GVFDQLVNL----AELRLDR-NQLKSLPPR 127
Query: 482 ----LPLCLQLLTVRNCNRLQSLPE 502
L L L++ N LQSLP+
Sbjct: 128 VFDSLTK-LTYLSLGY-NELQSLPK 150
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-08
Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 39/208 (18%)
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
LGQS+ + + + L + L + + T ++ L + +
Sbjct: 24 AYLNGLLGQSSTANI--TEAQMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNI-HA 78
Query: 249 EHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEY 307
++ + + +L+R+ +T + + L L +L + + D++ I +L
Sbjct: 79 TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137
Query: 308 LYYI-LAAASAISQLPSSVALSNM--LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY 364
+ I L+ AI+ + L + L+SL+ + DY
Sbjct: 138 VNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG--------------------VHDY 174
Query: 365 AVREIPQEIAYLSSLEILYLSGNNFESL 392
+ I L LY
Sbjct: 175 ------RGIEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 9e-05
Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 27/172 (15%)
Query: 359 LHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHL-----EDFNML 413
+ + I + A ++SL + L+ N L I+ ++ + + ++N +
Sbjct: 28 GLLGQSSTANITE--AQMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYNPI 84
Query: 414 QSLPELPLCLKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNM----LRSLPELPLCL 465
L L+ L ++ + S + L LD++ L + LP +
Sbjct: 85 SGLSN----LERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-KV 138
Query: 466 QYLNLEDCNMLRSLPELPLC--LQLLTVRNCNRLQSLPEI--LLCLQELDAS 513
++L + + L L+ L ++ + + I L +L A
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQF-DGVHDYRGIEDFPKLNQLYAF 189
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 24/143 (16%)
Query: 376 LSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP---ELPLCLKYLHLIDCK 432
L+S++ + + ++ +S+ I + + +R++ L N L + EL L YL L
Sbjct: 40 LNSIDQIIANNSDIKSVQGI-QYLPNVRYLAL-GGNKLHDISALKELTN-LTYLIL-TGN 95
Query: 433 MLQSLPVLPFC----LESLDLTGCNMLRSLPE----LPLCLQYLNLEDCNMLRSLPE--- 481
LQSLP F L+ L L N L+SLP+ L YLNL N L+SLP+
Sbjct: 96 QLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVF 153
Query: 482 --LPLCLQLLTVRNCNRLQSLPE 502
L L L + + N+LQSLPE
Sbjct: 154 DKLTN-LTELDL-SYNQLQSLPE 174
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 32/182 (17%), Positives = 73/182 (40%), Gaps = 17/182 (9%)
Query: 255 LEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAA 314
+ + + + +T+L S + L G++ ++ + +L + L + +
Sbjct: 15 DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS-NIQSL-AGMQFFTNLKELHLS 71
Query: 315 ASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGL--LHISDYAVREIPQE 372
+ IS L L+ L L + + L G+ + L L + + +R+
Sbjct: 72 HNQISDLSPLKDLTK-LEELSVNRNR------LKNLNGIPSACLSRLFLDNNELRDT-DS 123
Query: 373 IAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC--LKYLHLID 430
+ +L +LEIL + N +S+ + +S+L + L N + + L + ++ L
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWIDLTG 181
Query: 431 CK 432
K
Sbjct: 182 QK 183
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 36/207 (17%), Positives = 75/207 (36%), Gaps = 40/207 (19%)
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
+ LG+ ++ ++ S + L+ ++ + ++SL
Sbjct: 20 NAVKQNLGKQSVTDL-VSQKELSGVQNFNG-----------DNSNIQSL----------- 56
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDC--SKLDNLPDNIGSLE 306
++ +LK ++ I++L S ++L LE L V L+ +P L
Sbjct: 57 ----AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSA--CLS 109
Query: 307 YLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366
L+ + + S + L N L L + K L+S L LS + +L + +
Sbjct: 110 RLF---LDNNELRDTDSLIHLKN-LEILSIRNNK-LKSIV--MLGFLSKLEVLDLHGNEI 162
Query: 367 REIPQEIAYLSSLEILYLSGNNFESLP 393
+ L + + L+G + P
Sbjct: 163 TNTG-GLTRLKKVNWIDLTGQKCVNEP 188
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 315 ASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI- 373
A+ L N L L + + L+ L GL + L I +R + +
Sbjct: 18 DGALDSLHHLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 374 AYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 409
+ L L LS N ESL Q L+ + L
Sbjct: 77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 34/131 (25%)
Query: 359 LHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE 418
L + + + +L LY+ L+ + L D + L E
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQ------------HLQHLELRDL---RGLGE 57
Query: 419 LPLCLKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPE---LPLCLQYLNLE 471
L+ L ++ L+ + F L L+L+ N L SL L LQ L L
Sbjct: 58 ----LRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLS 111
Query: 472 ------DCNML 476
C +
Sbjct: 112 GNPLHCSCALR 122
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 21/128 (16%)
Query: 368 EIPQEIAYLSSLEILYLSGNNFESLPAII-KQMSQLRFIHLEDFNMLQSLPE---LPLC- 422
EIP + ++ + L N + +P +LR I L + N + L L
Sbjct: 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRS 81
Query: 423 LKYLHLIDCKMLQSLPVLPFC----LESLDLTGCNMLRSLPE-----LPLCLQYLNLEDC 473
L L L K + LP F L+ L L N + L L L L+L D
Sbjct: 82 LNSLVLYGNK-ITELPKSLFEGLFSLQLLLL-NANKINCLRVDAFQDLHN-LNLLSLYD- 137
Query: 474 NMLRSLPE 481
N L+++ +
Sbjct: 138 NKLQTIAK 145
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 20/131 (15%)
Query: 342 LESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA-IIKQM 399
++ P + + +S+ + E+ + L SL L L GN LP + + +
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103
Query: 400 SQLRFIHLEDFNMLQSLPE-----LPLCLKYLHLIDCKMLQSLPVLPF----CLESLDLT 450
L+ + L N + L L L L L D K LQ++ F ++++ L
Sbjct: 104 FSLQLLLLNA-NKINCLRVDAFQDLHN-LNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLA 160
Query: 451 G------CNML 455
C++
Sbjct: 161 QNPFICDCHLK 171
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 27/194 (13%)
Query: 330 MLRSLDSSHCK----GLESFPR-TFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYL 384
L++L + + + + + L+ L+ G S++A++ + ++ S L+ L L
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNL 175
Query: 385 SGNNF---ESLPAIIKQ-MSQLRFIHLEDFNML---QSLPELPLC---LKYLHLIDCKML 434
S + + + + ++L + L L L +L L D ML
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235
Query: 435 --QSLPVLPFC--LESLDLTGCNML--RSLPELPLC--LQYLNLEDCNMLRSLPELPLCL 486
L+ L L+ C + +L EL L+ L + +L L L
Sbjct: 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL 295
Query: 487 QLLTVRNCNRLQSL 500
L + NC+ ++
Sbjct: 296 PHLQI-NCSHFTTI 308
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 44/299 (14%), Positives = 93/299 (31%), Gaps = 37/299 (12%)
Query: 154 CQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDL 213
C+ S+ + + + +S V +S +++ + +
Sbjct: 36 CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95
Query: 214 EVLDLRGCKRLKR-ISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY-SDRTPI 271
+ +DL + + L L L G + L K +L R+ S +
Sbjct: 96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155
Query: 272 TE--LPSSFENLPGLEVLFVEDCSKLDN------LPDNIGSLEYLYYILAAASAISQLPS 323
+E L + + L+ L + C + ++ L S +
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN-----LSGYRKNLQ 210
Query: 324 SVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILY 383
LS ++R C L L + + + + E L+ L+ L
Sbjct: 211 KSDLSTLVR-----RCPNLVH--------LDLSDSVMLKNDCFQ----EFFQLNYLQHLS 253
Query: 384 LSGNNF---ESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPV 439
LS E+L + ++ L+ + + +L L L +L I+C ++
Sbjct: 254 LSRCYDIIPETLLE-LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ-INCSHFTTIAR 310
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 342 LESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA-IIKQM 399
L + GL+ + L++ ++ + + L+ L L L+ N SLP + +
Sbjct: 47 LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106
Query: 400 SQLRFIHLEDFNMLQSLPE-----LPLCLKYLHLIDCKMLQSLPVLPF----CLESLDLT 450
+QL ++L N L+SLP L LK L L + LQS+P F L++L L+
Sbjct: 107 TQLDKLYLGG-NQLKSLPSGVFDRLTK-LKELRL-NTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 451 GCNMLRSLPE 460
N L+S+P
Sbjct: 164 T-NQLQSVPH 172
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 30/132 (22%)
Query: 380 EILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKML 434
E L L +L + +++L +++L+ N LQ+L L L L L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGL-ANNQL 95
Query: 435 QSLPVLPF----CLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLT 490
SLP+ F L+ L L G N L+SLP + L +L L+L
Sbjct: 96 ASLPLGVFDHLTQLDKLYL-GGNQLKSLPS-------------GVFDRLTKLKE-LRL-- 138
Query: 491 VRNCNRLQSLPE 502
N N+LQS+P
Sbjct: 139 --NTNQLQSIPA 148
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 380 EILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE-----LPLCLKYLHLIDCKML 434
LYL GN F +P + L I L + N + +L + L L L L
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQ-LLTLIL-SYNRL 90
Query: 435 QSLPVLPF----CLESLDLTGCNMLRSLPE 460
+ +P F L L L G N + +PE
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHG-NDISVVPE 119
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 291 DCS--KLDNLPDNI-GSLEYLYYILAAASAISQLPSSVALSNM--LRSLDSSHCKGLESF 345
DCS KL+ +P++I L + + L ++ + LR ++ S+ K +
Sbjct: 17 DCSNQKLNKIPEHIPQYTAELR---LNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDI 72
Query: 346 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA-IIKQMSQLR 403
G S + + ++ + + ++ L SL+ L L N + +S +R
Sbjct: 73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 404 FIHLEDFNMLQSLPE 418
+ L D N + ++
Sbjct: 133 LLSLYD-NQITTVAP 146
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 25/157 (15%)
Query: 361 ISDYAVREIPQEIAYLSSLEILYLSGNNF-----ESLPAIIKQMSQLRFIHLEDFNMLQS 415
I+ + + + S++ + LSGN L I L D +
Sbjct: 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV 75
Query: 416 LPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNM-------LRSLPELPLCLQYL 468
E+P L+ L + L P L ++ L+ L L++L
Sbjct: 76 KDEIPEALRLL----LQALLKCPK----LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 127
Query: 469 NLEDCNM----LRSLPE-LPLCLQLLTVRNCNRLQSL 500
L + + + L +N L+S+
Sbjct: 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 376 LSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC--LKYLHL----- 428
L L G + + + Q I D N ++ L PL LK L +
Sbjct: 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSD-NEIRKLDGFPLLRRLKTLLVNNNRI 76
Query: 429 --IDCKMLQSLPVLPFCLESLDLTGCNMLRSLPEL-PL----CLQYLNLEDC 473
I + Q+LP L L LT N L L +L PL L YL +
Sbjct: 77 CRIGEGLDQALP----DLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 359 LHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQS--- 415
LH + ++ ++ L + + L LS NN E + + + M LR + L N+++
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSL-GRNLIKKIEN 87
Query: 416 LPELPLCLKYLHLIDCKM--LQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDC 473
L + L+ L + ++ L + L L L ++ N + + E+ L
Sbjct: 88 LDAVADTLEELWISYNQIASLSGIEKLV-NLRVLYMSN-NKITNWGEI------DKLAAL 139
Query: 474 NMLRSL 479
+ L L
Sbjct: 140 DKLEDL 145
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 779 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.98 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.96 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.96 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.95 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.95 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.94 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.94 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.93 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.93 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.92 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.92 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.91 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.9 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.89 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.89 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.89 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.89 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.89 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.88 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.88 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.88 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.87 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.87 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.87 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.87 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.87 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.86 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.85 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.85 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.85 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.83 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.82 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.81 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.81 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.81 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.81 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.8 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.8 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.8 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.79 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.78 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.78 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.78 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.77 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.76 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.76 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.76 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.75 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.74 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.74 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.73 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.73 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.73 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.72 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.72 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.72 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.71 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.7 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.69 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.66 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.66 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.65 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.64 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.62 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.62 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.62 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.58 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.58 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.57 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.57 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.57 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.55 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.55 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.54 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.54 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.54 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.52 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.49 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.45 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.44 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.43 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.4 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.39 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.37 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.35 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.34 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.33 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.32 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.31 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.29 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.25 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.23 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.23 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.23 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.14 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.14 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.1 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.09 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.09 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.05 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.0 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.99 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.98 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.84 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.79 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.72 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.66 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.64 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.54 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.51 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.45 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.4 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.21 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.04 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.66 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.61 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.57 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.51 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.32 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.23 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.81 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.73 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.26 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 93.57 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=422.38 Aligned_cols=455 Identities=18% Similarity=0.200 Sum_probs=316.9
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
.+|++|++++|.+...+..+ .+++|++|+|++|.++.. +|.+++++++|++|++++|.+.+.+|.. .+++|
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L 271 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-------FSRAISTCTELKLLNISSNQFVGPIPPL-PLKSL 271 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-------HHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTC
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-------ccHHHhcCCCCCEEECCCCcccCccCcc-ccCCC
Confidence 47777777777776533335 677777777777777643 6777778888888888888766666655 77788
Q ss_pred cEEEecCCcCccccCCcC----CCccEEEecCcCCc-ccCcccCCCCCccEEeeeCCCCCcccccc-cCCCCCCcEEecc
Q 004022 170 VTINFSYCVNLIEFPQIS----GKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTS-FCKLRSLVTLILL 243 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~----~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~ 243 (779)
++|++++|...+.+|..+ .+|+.|++++|.+. .+|..++++++|++|++++|.+.+.+|.. +..+++|++|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 888888887766666554 56788888888875 66777888888888888888777677765 7778888888888
Q ss_pred cccCCcccchhhhcCc-cCcEeecCCcCCC-cCCccCCC--CCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccC
Q 004022 244 GCLNLEHFPEILEKME-HLKRIYSDRTPIT-ELPSSFEN--LPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAI 318 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~-~L~~L~L~~n~i~-~lp~~l~~--l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~ 318 (779)
+|.+.+.+|..+..++ +|++|++++|.++ .+|..+.. +++|+.|++++|.+.+.+|..+..+++|+. .+.+|...
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 8877777777777776 7777777777766 44555544 667777777777777777777777777777 55555555
Q ss_pred CcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhc
Q 004022 319 SQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAII 396 (779)
Q Consensus 319 ~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l 396 (779)
+.+|..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+++ +|..+..+++|++|+|++|+++ .+|.++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 567777777777777777777777666554 4567777777777777775 6777777777777777777777 667777
Q ss_pred cCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCCCCCCC----------------------------------
Q 004022 397 KQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPV---------------------------------- 439 (779)
Q Consensus 397 ~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l~~lp~---------------------------------- 439 (779)
+.+++|+.|++++|++.+.+|.. .++|+.|++++|+....+|.
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 77777777777777777777653 36677777777754333321
Q ss_pred -------------------------------------C--CCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCc
Q 004022 440 -------------------------------------L--PFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLR 477 (779)
Q Consensus 440 -------------------------------------l--~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~ 477 (779)
+ ..+|+.|++++|++.+.+|.. +++|+.|++++|.-..
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 0 026889999999999999864 4789999999988777
Q ss_pred ccCCC---CCCccEEEEecCCCCCCccccc---cCCcccchhhhhhhccCCCCCc---ccccc-cccc--cceeeccccc
Q 004022 478 SLPEL---PLCLQLLTVRNCNRLQSLPEIL---LCLQELDASVLEKLSKHSPDLQ---WAPES-LKSA--AICFEFTNCL 545 (779)
Q Consensus 478 ~l~~~---~~sL~~L~i~~C~~L~~lp~~l---~~L~~L~~~~~~~l~~~~p~l~---~lp~~-l~~~--l~~l~~~~C~ 545 (779)
.+|.. +++|+.|++++|.-...+|..+ ..|+.|++++| ++++..|... .++.. +..+ +--.-+..|.
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N-~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCD 749 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS-EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC-cccccCCCchhhccCCHHHhcCCchhcCCCCcCCC
Confidence 88853 5789999999977666888765 46778888887 5666666542 22211 1111 0001123677
Q ss_pred ccCcccchhh
Q 004022 546 KLNGKANNKI 555 (779)
Q Consensus 546 ~l~~~~~~~i 555 (779)
.-..+.|.+|
T Consensus 750 ~~~~~~~~~~ 759 (768)
T 3rgz_A 750 PSNADGYAHH 759 (768)
T ss_dssp SCC-------
T ss_pred CCccCCCCCC
Confidence 7666777655
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=412.77 Aligned_cols=437 Identities=21% Similarity=0.214 Sum_probs=325.6
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
+|++|++++|.+........+++|++|+|++|.++.. +|. ++++++|++|++++|.+.+.+|. +.++++|+
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG-------IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSC-------CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCC-------Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 5555555555544333334566666666666666542 343 66777777777777776555554 55577777
Q ss_pred EEEecCCcCccccCC-cCCCccEEEecCcCCc-ccCcccCCC-CCccEEeeeCCCCCcccccccCCCCCCcEEecccccC
Q 004022 171 TINFSYCVNLIEFPQ-ISGKVTRLYLGQSAIE-EVPSSIECL-TDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLN 247 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~-~~~~L~~L~L~~n~i~-~lp~~l~~l-~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 247 (779)
+|++++|.....+|. .+.+|++|++++|.+. .+|..++.+ ++|++|++++|.+.+.+|..++.+++|++|++++|.+
T Consensus 251 ~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp EEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence 777777766554443 3457778888888776 777777664 8888888888887777888888888888888888887
Q ss_pred Ccccchh-hhcCccCcEeecCCcCCC-cCCccCCCCC-CCCEEeccCCCCCCCCCCCCCC--chhHHH-HHhhcccCCcC
Q 004022 248 LEHFPEI-LEKMEHLKRIYSDRTPIT-ELPSSFENLP-GLEVLFVEDCSKLDNLPDNIGS--LEYLYY-ILAAASAISQL 321 (779)
Q Consensus 248 ~~~~p~~-l~~l~~L~~L~L~~n~i~-~lp~~l~~l~-~L~~L~L~~~~~~~~lp~~l~~--l~~L~~-~~~~~~~~~~l 321 (779)
.+.+|.. +..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+.+.+|..+.. +++|+. .+.+|...+.+
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 7777765 788888888888888887 7777777776 8888888888887777777766 677777 56666666688
Q ss_pred CccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhccCC
Q 004022 322 PSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQM 399 (779)
Q Consensus 322 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l 399 (779)
|..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+.. +|..+..+++|++|++++|+++ .+|..+..+
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 888999999999999999988777665 6788999999999999885 8888999999999999999998 788889999
Q ss_pred CCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCCCCCCC----CCCCccEEEeeCCCCCCCCCCC-----------
Q 004022 400 SQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPV----LPFCLESLDLTGCNMLRSLPEL----------- 461 (779)
Q Consensus 400 ~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ls~n~~l~~l~~~----------- 461 (779)
++|++|++++|++.+.+|.. +++|++|++++|+....+|. ++ +|+.|++++|++.+.+|..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 99999999999999888874 47899999999987666663 33 8999999999887766631
Q ss_pred --------------------------------------------------------------CCCccEEeeecCcCCccc
Q 004022 462 --------------------------------------------------------------PLCLQYLNLEDCNMLRSL 479 (779)
Q Consensus 462 --------------------------------------------------------------~~~L~~L~l~~c~~L~~l 479 (779)
+++|+.|++++|.-...+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 245788888888766677
Q ss_pred CCC---CCCccEEEEecCCCCCCccccc---cCCcccchhhhhhhccCCCCCccccccccc--ccceeeccccc
Q 004022 480 PEL---PLCLQLLTVRNCNRLQSLPEIL---LCLQELDASVLEKLSKHSPDLQWAPESLKS--AAICFEFTNCL 545 (779)
Q Consensus 480 ~~~---~~sL~~L~i~~C~~L~~lp~~l---~~L~~L~~~~~~~l~~~~p~l~~lp~~l~~--~l~~l~~~~C~ 545 (779)
|.. +++|+.|++++|.-...+|..+ .+|+.|++++| ++++ .+|+.+.. .++.|++++|.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-~l~g------~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDG------RIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEE------CCCGGGGGCCCCSEEECCSSE
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-cccC------cCChHHhCCCCCCEEECcCCc
Confidence 743 5688889998876666888765 46677777776 2222 33444332 36777877764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=378.36 Aligned_cols=418 Identities=18% Similarity=0.137 Sum_probs=247.1
Q ss_pred EEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCC
Q 004022 27 IFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 27 i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~l 106 (779)
-.||++++....+.+.+|.++++||+|++++|.++ ...|..+..+ .+|++|++++|.++.+
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------------------WIHEDTFQSQ-HRLDTLVLTANPLIFM 96 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------------------EECTTTTTTC-TTCCEEECTTCCCSEE
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccc------------------eeChhhccCc-cccCeeeCCCCccccc
Confidence 34666667666777788888888888888888774 2345667777 4888888888888776
Q ss_pred -CCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCCCCCCCCCcEEEecCCcCcccc
Q 004022 107 -PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPSNLHFVCPVTINFSYCVNLIEF 183 (779)
Q Consensus 107 -p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~~~~l~~L~~L~L~~~~~l~~~ 183 (779)
|..+ .+++|++|++++|+++.+ .|..++++++|++|++++|.+.. ..|.+.++++|++|++++|......
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSI-------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCG-------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred ChhhhcccccccEeeccccCcccC-------CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 4455 788888888888888874 35667788888888888888655 4466777888888888888766544
Q ss_pred CC---cCCCcc--EEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc--------------------------cccC
Q 004022 184 PQ---ISGKVT--RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS--------------------------TSFC 232 (779)
Q Consensus 184 ~~---~~~~L~--~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp--------------------------~~l~ 232 (779)
+. .+.+|+ .|++++|.+..+++......+|+.|++++|....... ..+.
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred hhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhc
Confidence 43 345666 7888888888777766666778888888775221111 1111
Q ss_pred CCC--CCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH
Q 004022 233 KLR--SLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY 310 (779)
Q Consensus 233 ~l~--~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 310 (779)
.+. +|+.|++++|.+.+..+..++.+++|++|++++|.++++|..+..+++|++|++++|.+.+..|..+
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~-------- 321 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA-------- 321 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG--------
T ss_pred hhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh--------
Confidence 111 5666666666666555556666666777777776666666666666677777776666555444444
Q ss_pred HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC---CcccCCCCCccEEEEecC
Q 004022 311 ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI---PQEIAYLSSLEILYLSGN 387 (779)
Q Consensus 311 ~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~---p~~l~~l~~L~~L~Ls~n 387 (779)
..+++|++|++++|.+....+...+..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 322 ---------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 322 ---------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp ---------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred ---------------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence 44455555555555544444333344455555555555555442 334455555555555555
Q ss_pred CCccC-ChhccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCCCCCCCC----CCCCccEEEeeCCCCCCC-
Q 004022 388 NFESL-PAIIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKMLQSLPV----LPFCLESLDLTGCNMLRS- 457 (779)
Q Consensus 388 ~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ls~n~~l~~- 457 (779)
.++.+ |..+..+++|+.|++++|.+.+..+. .+++|++|++++|......|. ++ +|++|++++|.+.+.
T Consensus 387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGN 465 (606)
T ss_dssp SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGE
T ss_pred cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccc
Confidence 54432 33445555555555555554443322 124455555555543222221 22 455555555554431
Q ss_pred CC-----CCCCCccEEeeecCcCCcccCC---CCCCccEEEEecC
Q 004022 458 LP-----ELPLCLQYLNLEDCNMLRSLPE---LPLCLQLLTVRNC 494 (779)
Q Consensus 458 l~-----~~~~~L~~L~l~~c~~L~~l~~---~~~sL~~L~i~~C 494 (779)
++ ..+++|++|++++|......|. .+++|+.|++++|
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 11 1124555555555433222222 2245555555554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=373.05 Aligned_cols=477 Identities=20% Similarity=0.163 Sum_probs=274.2
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccc-----cCCCCccccccccceeecCCC-CCCCCCCceEEEccCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE-----KLPSMSTEEQLSYSKVQLPNG-LDYLPKKLRYLHWDTY 101 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~-----~l~~l~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~n 101 (779)
.||++++....+.+.+|.++++|++|++++|.++++. .+++|..+......-..+|.. +..+ .+|++|++++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSN 107 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC-CCCCEEECCCC
Confidence 3556666666788889999999999999999887542 345555555555444556653 5555 48888888888
Q ss_pred CCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC---CCCCCCCcEEEecC
Q 004022 102 PLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS---NLHFVCPVTINFSY 176 (779)
Q Consensus 102 ~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~ 176 (779)
.++.+|. .| .+++|++|+|++|.++.. .|..++++++|++|++++|.+....+. ...+++|+.|++++
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSST-------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCC-------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ccCccChhHccccCCCCEEECCCCccccc-------CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 8877764 34 778888888888877764 556677778888888877775443332 22456777777777
Q ss_pred CcCccccCCcC------------------------------CCccEEEecCcCCccc-CcccCCCCC--ccEEeeeCCCC
Q 004022 177 CVNLIEFPQIS------------------------------GKVTRLYLGQSAIEEV-PSSIECLTD--LEVLDLRGCKR 223 (779)
Q Consensus 177 ~~~l~~~~~~~------------------------------~~L~~L~L~~n~i~~l-p~~l~~l~~--L~~L~L~~~~~ 223 (779)
|......|..+ .+|+.|++++|.+..+ |..+..++. |++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 75543333211 3455566666665444 334544433 77777777776
Q ss_pred CcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC------cCCc----cCCCCCCCCEEeccCCC
Q 004022 224 LKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT------ELPS----SFENLPGLEVLFVEDCS 293 (779)
Q Consensus 224 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~------~lp~----~l~~l~~L~~L~L~~~~ 293 (779)
.+..|..+..+++|++|++++|.+.+..|..+..+++|++|+++++... .+|. .+..+++|+.|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 6666666677777777777777766666666777777777777654332 3332 46667777777777777
Q ss_pred CCCCCCCCCCCchhHHH-HHhhcc----------------------------cCCcCCccccCccccCeeeccCCCCCCc
Q 004022 294 KLDNLPDNIGSLEYLYY-ILAAAS----------------------------AISQLPSSVALSNMLRSLDSSHCKGLES 344 (779)
Q Consensus 294 ~~~~lp~~l~~l~~L~~-~~~~~~----------------------------~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 344 (779)
+.+..+..+..+++|+. .+.++. .....|..+..+++|+.|++++|.+.+.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 66666666666666666 333322 1112233444455555555555555444
Q ss_pred cChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc---cCChhccCCCCCCEEEcCCCCCCCcCCCC-
Q 004022 345 FPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE---SLPAIIKQMSQLRFIHLEDFNMLQSLPEL- 419 (779)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~- 419 (779)
++...+.++++|+.|++++|.+.. .+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..+..
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 433334455555555555555544 2334455555555555555443 34455555555555555555555433332
Q ss_pred --CCCccEEEEecCCCCCC------------CCCCCCCccEEEeeCCCCCCCCCC---CCCCccEEeeecCcCCcccCCC
Q 004022 420 --PLCLKYLHLIDCKMLQS------------LPVLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNLEDCNMLRSLPEL 482 (779)
Q Consensus 420 --~~~L~~L~l~~c~~l~~------------lp~l~~~L~~L~ls~n~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~ 482 (779)
.++|++|++++|..... +..++ +|++|++++|.+....+. .+++|++|++++| .++.+|..
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 578 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPAS 578 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCC-CCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHh
Confidence 24555555555543211 11111 555666655555432222 1245556666543 33344421
Q ss_pred ----CCCccEEEEecCCCCCCccc-----cccCCcccchhhh
Q 004022 483 ----PLCLQLLTVRNCNRLQSLPE-----ILLCLQELDASVL 515 (779)
Q Consensus 483 ----~~sL~~L~i~~C~~L~~lp~-----~l~~L~~L~~~~~ 515 (779)
+++|+.|++++| .++.+|. .+.+|+.|++.++
T Consensus 579 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred HhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCC
Confidence 245556666553 4444443 2345555555554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=377.54 Aligned_cols=452 Identities=17% Similarity=0.118 Sum_probs=337.3
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCC-
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL- 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~l- 106 (779)
.||++++....+.+.+|+++++||+|++++|.++ ...|..+..+ ++|++|++++|.++.+
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------~i~~~~~~~l-~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE------------------TIEDKAWHGL-HHLSNLILTGNPIQSFS 96 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------------------EECTTTTTTC-TTCCEEECTTCCCCCCC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCccc------------------ccCHHHhhch-hhcCEeECCCCcccccC
Confidence 3566666666778888888999999999888874 2235566777 5999999999999988
Q ss_pred CCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCC-CCCCCCCcEEEecCCcCcccc
Q 004022 107 PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPS-NLHFVCPVTINFSYCVNLIEF 183 (779)
Q Consensus 107 p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~-~~~l~~L~~L~L~~~~~l~~~ 183 (779)
|..| ++++|++|+|++|.++.+ .+..++++++|++|++++|.+.. .+|. +.++++|++|++++|......
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASL-------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCS-------SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred hhhcCCcccCCEEEccCCccccc-------cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 6667 899999999999999875 44678899999999999998765 5666 667999999999999877666
Q ss_pred CCcCCC-------ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCC-cccccccCCCCCCcEEec-------------
Q 004022 184 PQISGK-------VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRL-KRISTSFCKLRSLVTLIL------------- 242 (779)
Q Consensus 184 ~~~~~~-------L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~L------------- 242 (779)
+..+.. +..|++++|.+..++.......+|+.|++++|... ...|..+.++++|+.+.+
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 665543 34899999999999987777779999999999865 345555666777766655
Q ss_pred --------------------ccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCC
Q 004022 243 --------------------LGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNI 302 (779)
Q Consensus 243 --------------------~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l 302 (779)
..+...+..|. +..+++|+.|+++++.++.+| .+..+++|+.|++++|.+ +.+|. +
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~ 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C
Confidence 33344445555 788899999999999999888 788899999999999888 77773 4
Q ss_pred CCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCcc--ChhhccCCCCCcEEEecCCCCccCCcccCCCCCc
Q 004022 303 GSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESF--PRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSL 379 (779)
Q Consensus 303 ~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L 379 (779)
.+++|+. .+.++.....+ .+..+++|++|++++|.+.+.. +. .+..+++|+.|++++|.+..+|..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L 401 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEEECCCCTTCTTC
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCccccchhhccCCCCC
Confidence 7777777 55555444433 4567788888888888776542 22 2567788888888888888877778888888
Q ss_pred cEEEEecCCCccCC--hhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCCCC-CCC----CCCCccEEEe
Q 004022 380 EILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQS-LPV----LPFCLESLDL 449 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l~~-lp~----l~~~L~~L~l 449 (779)
++|++++|.++.++ ..+..+++|+.|++++|.+.+..|.. .++|++|++++|..... +|. ++ +|++|++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~L 480 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDL 480 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEEC
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-CCCEEEC
Confidence 88888888877554 36778888888888888877766653 36788888888765432 332 23 7888888
Q ss_pred eCCCCCCCCCCC---CCCccEEeeecCcCCcccCC---CCCCccEEEEecCCCCCCcccccc----CCcccchhhh
Q 004022 450 TGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPE---LPLCLQLLTVRNCNRLQSLPEILL----CLQELDASVL 515 (779)
Q Consensus 450 s~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~~---~~~sL~~L~i~~C~~L~~lp~~l~----~L~~L~~~~~ 515 (779)
++|.+.+..|.. +++|++|++++|......|. .+++|+.|++++|. ++.+|..+. +|+.|++.++
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 888877766653 36788888888755444443 34678888888754 667776543 3555666555
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=364.26 Aligned_cols=435 Identities=17% Similarity=0.171 Sum_probs=276.5
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccc-----cCCCCccccccccceeec-CCCCCCCCCCceEEEccCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE-----KLPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTY 101 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~-----~l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n 101 (779)
.||++++....+.+.+|+++++|++|++++|.++++. .+++|..+......-..+ +..+..+ ++|++|++++|
T Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n 139 (606)
T 3t6q_A 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSN 139 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC-TTCCEEECCSS
T ss_pred EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccC-CcccEEECCCC
Confidence 4677777777888999999999999999999997542 233444444333333333 3345555 47777777777
Q ss_pred CCCCC--CCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCc--EEeccCCCCCCCCCCCCCCCCCcEEEecCC
Q 004022 102 PLRTL--PSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLS--ALSFKGCQSLRSFPSNLHFVCPVTINFSYC 177 (779)
Q Consensus 102 ~l~~l--p~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~--~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~ 177 (779)
.++.+ |..+.+++|++|++++|.++.+ .|..++.+++|+ .|++++|.+....|......+|+.|++++|
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYL-------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEE-------CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred cccccCcccccCCcccCEEEcccCccccc-------ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 77765 4444777777777777777764 455677777777 777777776666666666677777777776
Q ss_pred cCccccCC-----------------------------cC--CCccEEEecCcCCcccCcc-cCCCCCccEEeeeCCCCCc
Q 004022 178 VNLIEFPQ-----------------------------IS--GKVTRLYLGQSAIEEVPSS-IECLTDLEVLDLRGCKRLK 225 (779)
Q Consensus 178 ~~l~~~~~-----------------------------~~--~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~ 225 (779)
......+. .+ .+|+.|++++|.+..++.. ++.+++|++|++++|.+.
T Consensus 213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 291 (606)
T 3t6q_A 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291 (606)
T ss_dssp SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence 52211110 00 1567777777777776653 677777888888777644
Q ss_pred ccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC-cCCcc-CCCCCCCCEEeccCCCCCCCCCCCCC
Q 004022 226 RISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSS-FENLPGLEVLFVEDCSKLDNLPDNIG 303 (779)
Q Consensus 226 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~ 303 (779)
.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.. +..+++|+.|++++|.+.+..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----- 366 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD----- 366 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE-----
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc-----
Confidence 56667777777888888777777766777777777888888777776 55554 777777788877777665433
Q ss_pred CchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC-C-cccCCCCCccE
Q 004022 304 SLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-P-QEIAYLSSLEI 381 (779)
Q Consensus 304 ~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~-p-~~l~~l~~L~~ 381 (779)
..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+... + ..+..+++|++
T Consensus 367 ----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 367 ----------------CCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp ----------------ESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred ----------------CcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 01333455666666666666655443332 45566666666666666552 2 23566666666
Q ss_pred EEEecCCCccC-ChhccCCCCCCEEEcCCCCCCCc-CC-----CCCCCccEEEEecCCCCCCCC----CCCCCccEEEee
Q 004022 382 LYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQS-LP-----ELPLCLKYLHLIDCKMLQSLP----VLPFCLESLDLT 450 (779)
Q Consensus 382 L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~-~~-----~~~~~L~~L~l~~c~~l~~lp----~l~~~L~~L~ls 450 (779)
|++++|.++.. |..+..+++|++|++++|++.+. ++ ..+++|++|++++|......| .++ +|++|+++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls 508 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK-MMNHVDLS 508 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECC
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc-CCCEEECC
Confidence 66666666643 34566666666666666666542 11 123566666666665433222 222 67777777
Q ss_pred CCCCCCCCCCCC---CCccEEeeecCcCCcccCCC---CCCccEEEEecCC
Q 004022 451 GCNMLRSLPELP---LCLQYLNLEDCNMLRSLPEL---PLCLQLLTVRNCN 495 (779)
Q Consensus 451 ~n~~l~~l~~~~---~~L~~L~l~~c~~L~~l~~~---~~sL~~L~i~~C~ 495 (779)
+|++.+..|..+ ++| +|++++|......|.. +++|+.|++++|+
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 777766655433 456 7777776544333322 3577778877765
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=370.47 Aligned_cols=456 Identities=20% Similarity=0.201 Sum_probs=324.2
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeec-CCCCCCCCCCceEEEccCCCCCCC-
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTL- 106 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n~l~~l- 106 (779)
||++++....+.+.+|.++++||+|++++|... ..+ |..+..+ .+|++|++++|.++.+
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~------------------~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP------------------LTIDKEAFRNL-PNLRILDLGSSKIYFLH 89 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCC------------------CEECTTTTSSC-TTCCEEECTTCCCCEEC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCc------------------cccCHHHhcCC-CCCCEEECCCCcCcccC
Confidence 455555555667777888888888888877442 244 5567777 4888999988888877
Q ss_pred CCCC-CCCCCcEEECCCCCCCCccCCCCcccCcc--ccCCCCCcEEeccCCCCCCCCC--CCCCCCCCcEEEecCCcCcc
Q 004022 107 PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSS--IQNFKYLSALSFKGCQSLRSFP--SNLHFVCPVTINFSYCVNLI 181 (779)
Q Consensus 107 p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~--~~~l~~L~~L~Ls~n~~l~~~p--~~~~l~~L~~L~L~~~~~l~ 181 (779)
|..| .+++|++|+|++|.++.. +|.. |+++++|++|+|++|.+.+..+ .+.++++|++|++++|....
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDA-------VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSC-------CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred HhHccCCcccCEeeCcCCCCCcc-------cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 5566 888888999988888753 3433 7788888888888888665544 26678888888888887766
Q ss_pred ccCCcC-----CCccEEEecCcCCcc-cCcccCCCCC------ccEEeeeCCCCCcccccccC-----------------
Q 004022 182 EFPQIS-----GKVTRLYLGQSAIEE-VPSSIECLTD------LEVLDLRGCKRLKRISTSFC----------------- 232 (779)
Q Consensus 182 ~~~~~~-----~~L~~L~L~~n~i~~-lp~~l~~l~~------L~~L~L~~~~~~~~lp~~l~----------------- 232 (779)
..+..+ .+|+.|++++|.+.. .|..++.+.+ |+.|++++|.+....+..+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 555443 577888888887753 4445554444 88888888865544433222
Q ss_pred -------------------C--CCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCC-ccCCCCCCCCEEecc
Q 004022 233 -------------------K--LRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELP-SSFENLPGLEVLFVE 290 (779)
Q Consensus 233 -------------------~--l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~ 290 (779)
+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++ ..+..+++|+.|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 1 257888888888777777777888888888888888887664 457788888888888
Q ss_pred CCCCCCCCCCCCCCchhHHH-HHhhcccCCcC-CccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc
Q 004022 291 DCSKLDNLPDNIGSLEYLYY-ILAAASAISQL-PSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE 368 (779)
Q Consensus 291 ~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~ 368 (779)
+|.+.+..|..+..+++|+. .+.++ .+..+ +..+..+++|+.|++++|.+... ..+++|+.|++++|.++.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCC------SSCCSCSEEEEESCCCCC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCcc------cCCCCcchhccCCCCccc
Confidence 88777777777778887777 44444 34444 34577788888888888877642 236778888888888877
Q ss_pred CCcccCCCCCccEEEEecCCCccCCh--hccCCCCCCEEEcCCCCCCCcC----CCCCCCccEEEEecCCCCCC------
Q 004022 369 IPQEIAYLSSLEILYLSGNNFESLPA--IIKQMSQLRFIHLEDFNMLQSL----PELPLCLKYLHLIDCKMLQS------ 436 (779)
Q Consensus 369 ~p~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~~~~~~----~~~~~~L~~L~l~~c~~l~~------ 436 (779)
+|.. ..+++.|++++|+++.++. .+..+++|+.|++++|.+.+.. +...++|+.|++++|..-..
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 7653 4567888888888876653 4568899999999999887543 23457899999998865321
Q ss_pred ---CCCCCCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCcccCC--CCCCccEEEEecCCCCCCccccccCCc
Q 004022 437 ---LPVLPFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPE--LPLCLQLLTVRNCNRLQSLPEILLCLQ 508 (779)
Q Consensus 437 ---lp~l~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~~--~~~sL~~L~i~~C~~L~~lp~~l~~L~ 508 (779)
+..++ +|++|++++|.+.+..+.. +++|++|++++| .+..++. .+++|+.|+++++.-....|..+.+|+
T Consensus 473 ~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 473 WDVFEGLS-HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp SSCSSCBC-CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred hhhhcCcc-cccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhHhCCcC
Confidence 22233 7889999999888777653 378899999887 4555553 236899999999665555566777888
Q ss_pred ccchhhhhhhccCCC
Q 004022 509 ELDASVLEKLSKHSP 523 (779)
Q Consensus 509 ~L~~~~~~~l~~~~p 523 (779)
.|++.+| .+...|+
T Consensus 551 ~l~l~~N-p~~C~c~ 564 (844)
T 3j0a_A 551 VLDITHN-KFICECE 564 (844)
T ss_dssp EEEEEEE-CCCCSSS
T ss_pred EEEecCC-Ccccccc
Confidence 8888776 2333443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=365.96 Aligned_cols=388 Identities=15% Similarity=0.185 Sum_probs=256.5
Q ss_pred cCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCC------------------------
Q 004022 48 SNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPL------------------------ 103 (779)
Q Consensus 48 ~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l------------------------ 103 (779)
.+++.|+|+++.++ ..+|..+..+ ++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~------------------g~lp~~l~~L-~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (636)
T 4eco_A 81 GRVTGLSLEGFGAS------------------GRVPDAIGQL-TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141 (636)
T ss_dssp CCEEEEECTTSCCE------------------EEECGGGGGC-TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHH
T ss_pred CCEEEEEecCcccC------------------CcCChHHhcC-ccceEEECcCCccccCCccccccccccCchHHHHHHH
Confidence 57899999999885 5788888888 5999999988843
Q ss_pred ------------------------------------------------------CCCCCCC-CCCCCcEEECCCCCCCCc
Q 004022 104 ------------------------------------------------------RTLPSNF-KPKNLVELNLRCSKVEQP 128 (779)
Q Consensus 104 ------------------------------------------------------~~lp~~~-~l~~L~~L~L~~n~i~~l 128 (779)
+.+|..+ ++++|++|+|++|.++..
T Consensus 142 ~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~ 221 (636)
T 4eco_A 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAE 221 (636)
T ss_dssp HTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGG
T ss_pred HhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccc
Confidence 2356555 677788888887777651
Q ss_pred -----cCCCC-----cccCcccc--CCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCc-Ccc-ccCCcC------
Q 004022 129 -----WEGEK-----ACVPSSIQ--NFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCV-NLI-EFPQIS------ 187 (779)
Q Consensus 129 -----~~g~~-----~~lp~~~~--~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~-~l~-~~~~~~------ 187 (779)
|.... +.+|..++ ++++|++|+|++|.+.+.+|. +.++++|++|++++|. ... .+|..+
T Consensus 222 ~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~ 301 (636)
T 4eco_A 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301 (636)
T ss_dssp GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS
T ss_pred cccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcc
Confidence 10000 00567777 777888888887777777775 4557778888888776 444 455433
Q ss_pred ---CCccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCcc-C
Q 004022 188 ---GKVTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH-L 261 (779)
Q Consensus 188 ---~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~-L 261 (779)
.+|+.|++++|.+..+|. .++++++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |
T Consensus 302 ~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L 379 (636)
T 4eco_A 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379 (636)
T ss_dssp GGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTC
T ss_pred ccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccC
Confidence 567777787777777777 77777778888887777766777 6777777788888777665 66777777777 7
Q ss_pred cEeecCCcCCCcCCccCCCCC--CCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCC
Q 004022 262 KRIYSDRTPITELPSSFENLP--GLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHC 339 (779)
Q Consensus 262 ~~L~L~~n~i~~lp~~l~~l~--~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n 339 (779)
++|++++|.++.+|..+..++ +|+.|++++|.+.+..|..+... ......+++|+.|++++|
T Consensus 380 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~----------------~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL----------------DPTPFKGINVSSINLSNN 443 (636)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT----------------CSSCCCCCCEEEEECCSS
T ss_pred cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc----------------ccccccCCCCCEEECcCC
Confidence 888888777777777666544 77778887777777666655410 000114456666666666
Q ss_pred CCCCccChhhccCCCCCcEEEecCCCCccCCcccCC--------CCCccEEEEecCCCccCChhcc--CCCCCCEEEcCC
Q 004022 340 KGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAY--------LSSLEILYLSGNNFESLPAIIK--QMSQLRFIHLED 409 (779)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~--------l~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~Ls~ 409 (779)
.+.. ++...+..+++|+.|++++|.++.+|..... +++|++|+|++|+++.+|..+. .+++|+.|++++
T Consensus 444 ~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 444 QISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CCCS-CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS
T ss_pred ccCc-CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC
Confidence 6663 3333345566666666666666665554322 1266666666666666666655 666666666666
Q ss_pred CCCCCcCCCC---CCCccEEEEec------CCCCCCCCC----CCCCccEEEeeCCCCCCCCCC-CCCCccEEeeecCcC
Q 004022 410 FNMLQSLPEL---PLCLKYLHLID------CKMLQSLPV----LPFCLESLDLTGCNMLRSLPE-LPLCLQYLNLEDCNM 475 (779)
Q Consensus 410 n~~~~~~~~~---~~~L~~L~l~~------c~~l~~lp~----l~~~L~~L~ls~n~~l~~l~~-~~~~L~~L~l~~c~~ 475 (779)
|++.+ +|.. .++|+.|++++ |.....+|. ++ +|++|++++|.+ +.+|. ..++|++|++++|+.
T Consensus 523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTT
T ss_pred CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC-CCCEEECCCCcC-CccCHhHhCcCCEEECcCCCC
Confidence 66665 4442 35666666643 333344442 22 677777777777 55554 447788888887754
Q ss_pred C
Q 004022 476 L 476 (779)
Q Consensus 476 L 476 (779)
.
T Consensus 600 ~ 600 (636)
T 4eco_A 600 I 600 (636)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=354.35 Aligned_cols=472 Identities=16% Similarity=0.133 Sum_probs=369.4
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
.+|+++.....++.... ++|+.|++++|.++ ...+..+..+ ++|++|++++|.++.++
T Consensus 15 ~~~c~~~~l~~ip~~~~---~~l~~L~Ls~n~l~------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~i~ 72 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP---SSTKNIDLSFNPLK------------------ILKSYSFSNF-SELQWLDLSRCEIETIE 72 (606)
T ss_dssp EEECTTSCCSSCCTTSC---TTCCEEECTTSCCC------------------EECTTTTTTC-TTCCEEECTTCCCCEEC
T ss_pred ceEccCCCcccCCCCCC---CCcCEEECCCCCcC------------------EeChhhccCC-ccCcEEeCCCCcccccC
Confidence 57787777767776433 78999999999985 2234467777 59999999999999885
Q ss_pred C-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC-CCCCCCCCcEEEecCCcCcc-cc
Q 004022 108 S-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP-SNLHFVCPVTINFSYCVNLI-EF 183 (779)
Q Consensus 108 ~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p-~~~~l~~L~~L~L~~~~~l~-~~ 183 (779)
. .| ++++|++|+|++|.++.+ .|.+|+++++|++|+|++|.+....+ .+.++++|++|++++|.... .+
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSF-------SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCC-------CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC
T ss_pred HHHhhchhhcCEeECCCCccccc-------ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec
Confidence 4 56 899999999999999985 68899999999999999999655443 36779999999999998765 55
Q ss_pred CCc---CCCccEEEecCcCCcccCc-ccCCCCCc----cEEeeeCCCCCcccccccCCCCCCcEEecccccCC-cccchh
Q 004022 184 PQI---SGKVTRLYLGQSAIEEVPS-SIECLTDL----EVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL-EHFPEI 254 (779)
Q Consensus 184 ~~~---~~~L~~L~L~~n~i~~lp~-~l~~l~~L----~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~-~~~p~~ 254 (779)
|.. +.+|+.|++++|.+..++. .++.+++| ++|++++|.+.+..+..+. ..+|++|++++|... +..|..
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~ 224 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTC 224 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccccc-CceeeeeeccCCccchhHHHHH
Confidence 654 4679999999999987754 56655554 4899999987665555444 459999999999876 456777
Q ss_pred hhcCccCcEeec---------------------------------CCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCC
Q 004022 255 LEKMEHLKRIYS---------------------------------DRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301 (779)
Q Consensus 255 l~~l~~L~~L~L---------------------------------~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 301 (779)
++.+++|+.+++ ..+.+......+..+++|+.|++++|.+ ..+| .
T Consensus 225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~ 302 (606)
T 3vq2_A 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-D 302 (606)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-C
T ss_pred hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhh-h
Confidence 888888777665 3344443333377889999999999887 4566 7
Q ss_pred CCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC---CcccCCCC
Q 004022 302 IGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI---PQEIAYLS 377 (779)
Q Consensus 302 l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~---p~~l~~l~ 377 (779)
+..+++|+. .+.+|.. +.+|. + .+++|+.|++++|......+ +..+++|+.|++++|.++.. |..+..++
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECC---CCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred ccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchh---hccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 888889998 5555544 88884 5 99999999999997666542 56899999999999999875 78889999
Q ss_pred CccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCC-C---CCCCccEEEEecCCCCCCCCC----CCCCccEEEe
Q 004022 378 SLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP-E---LPLCLKYLHLIDCKMLQSLPV----LPFCLESLDL 449 (779)
Q Consensus 378 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~-~---~~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~l 449 (779)
+|++|++++|.++.+|..+..+++|+.|++++|.+.+..+ . .+++|++|++++|......|. ++ +|++|++
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l 455 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKM 455 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEEC
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC-CCCEEEC
Confidence 9999999999999999899999999999999999988776 2 358899999999986554443 33 8999999
Q ss_pred eCCCCCCC-CCCC---CCCccEEeeecCcCCcccCC---CCCCccEEEEecCCCCCCccccc---cCCcccchhhhhhhc
Q 004022 450 TGCNMLRS-LPEL---PLCLQYLNLEDCNMLRSLPE---LPLCLQLLTVRNCNRLQSLPEIL---LCLQELDASVLEKLS 519 (779)
Q Consensus 450 s~n~~l~~-l~~~---~~~L~~L~l~~c~~L~~l~~---~~~sL~~L~i~~C~~L~~lp~~l---~~L~~L~~~~~~~l~ 519 (779)
++|.+.+. +|.. +++|++|++++|......|. .+++|++|++++|.-....|..+ .+|+.|++++|
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N---- 531 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN---- 531 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS----
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC----
Confidence 99998873 5543 48999999999865555454 35799999999985444446655 46778888877
Q ss_pred cCCCCCcccccc---cccccceeecccccc
Q 004022 520 KHSPDLQWAPES---LKSAAICFEFTNCLK 546 (779)
Q Consensus 520 ~~~p~l~~lp~~---l~~~l~~l~~~~C~~ 546 (779)
.+..+|.. ++..++.+.+.+++-
T Consensus 532 ----~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 532 ----RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ----CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred ----cCcccCHhHhhhcccCcEEEccCCCc
Confidence 35556655 333578888877653
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=349.13 Aligned_cols=498 Identities=17% Similarity=0.163 Sum_probs=344.2
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCccccccc-----CCCCccccccccceeec-CCCCCCCCCCceEEEccCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEK-----LPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTY 101 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~-----l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n 101 (779)
.+|+++.....++.. +. ++|++|++++|.++++.. ++++..+......-..+ |..+..+ ++|++|++++|
T Consensus 8 ~~~cs~~~L~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n 83 (680)
T 1ziw_A 8 VADCSHLKLTQVPDD-LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHN 83 (680)
T ss_dssp EEECCSSCCSSCCSC-SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSS
T ss_pred eeECCCCCccccccc-cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCC
Confidence 477777766666653 32 789999999999986542 34444444433332333 3345556 58899999988
Q ss_pred CCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCc
Q 004022 102 PLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCV 178 (779)
Q Consensus 102 ~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~ 178 (779)
.++.+|.. | .+++|++|+|++|+++.+ .|.+|+++++|++|++++|.+....|. +.++++|++|++++|.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKI-------KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCC-------CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred ccCccChhhhccCCCCCEEECCCCccCcc-------ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 88888874 5 888899999998888764 456788888999999988887665555 5568889999998887
Q ss_pred CccccCC-----cCCCccEEEecCcCCcccCc-ccCCC---------------------------CCccEEeeeCCCCCc
Q 004022 179 NLIEFPQ-----ISGKVTRLYLGQSAIEEVPS-SIECL---------------------------TDLEVLDLRGCKRLK 225 (779)
Q Consensus 179 ~l~~~~~-----~~~~L~~L~L~~n~i~~lp~-~l~~l---------------------------~~L~~L~L~~~~~~~ 225 (779)
.....+. ...+|+.|++++|.+..++. .++.+ ++|+.|++++|.+.+
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 6544332 22578888998888876653 33333 456666777776666
Q ss_pred ccccccCCCCC--CcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCCCCCCCEEeccCCCCCC-----C
Q 004022 226 RISTSFCKLRS--LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLD-----N 297 (779)
Q Consensus 226 ~lp~~l~~l~~--L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~-----~ 297 (779)
..|..+..++. |++|++++|.+.+..|..++.+++|++|++++|.++.+ |..+..+++|+.|++++|...+ .
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 66666666644 77777777777766667777777777777777777754 3457777777777777654332 2
Q ss_pred CCC----CCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCc-cChhhcc--CCCCCcEEEecCCCCcc-
Q 004022 298 LPD----NIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLES-FPRTFLL--GLSAMGLLHISDYAVRE- 368 (779)
Q Consensus 298 lp~----~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~--~l~~L~~L~Ls~~~l~~- 368 (779)
+|. .+..+++|+. .+.++...+..+..+..+++|++|++++|.+... ++...+. ..++|+.|++++|.++.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 222 5566677777 4444444444455677778888888887764322 2211121 23578888888888888
Q ss_pred CCcccCCCCCccEEEEecCCCc-cCC-hhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCC--CCCCC--
Q 004022 369 IPQEIAYLSSLEILYLSGNNFE-SLP-AIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKML--QSLPV-- 439 (779)
Q Consensus 369 ~p~~l~~l~~L~~L~Ls~n~l~-~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l--~~lp~-- 439 (779)
.|..+..+++|+.|++++|.++ .+| ..+..+++|++|++++|.+.+..+.. .++|+.|++++|..- ..+|.
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 4667888999999999999987 465 67889999999999999876655543 478999999988642 23332
Q ss_pred --CCCCccEEEeeCCCCCCCCCCC---CCCccEEeeecCcCCcccC------------CCCCCccEEEEecCCCCCCccc
Q 004022 440 --LPFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLP------------ELPLCLQLLTVRNCNRLQSLPE 502 (779)
Q Consensus 440 --l~~~L~~L~ls~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~------------~~~~sL~~L~i~~C~~L~~lp~ 502 (779)
++ +|++|++++|.+.+..+.. +++|++|++++|. +..++ ..+++|+.|++++| .++.+|.
T Consensus 477 ~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~ 553 (680)
T 1ziw_A 477 QPLR-NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553 (680)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ccCC-CCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH
Confidence 33 8999999999988766653 4789999999975 33321 23478999999985 6778885
Q ss_pred c----ccCCcccchhhhhhhccCCCCCcccccc-cc--cccceeecccccccC
Q 004022 503 I----LLCLQELDASVLEKLSKHSPDLQWAPES-LK--SAAICFEFTNCLKLN 548 (779)
Q Consensus 503 ~----l~~L~~L~~~~~~~l~~~~p~l~~lp~~-l~--~~l~~l~~~~C~~l~ 548 (779)
. +.+|+.|+++++ .+..+|.. +. ..++.+.+.++ ++.
T Consensus 554 ~~~~~l~~L~~L~Ls~N--------~l~~l~~~~~~~l~~L~~L~L~~N-~l~ 597 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLN--------NLNTLPASVFNNQVSLKSLNLQKN-LIT 597 (680)
T ss_dssp TTTTTCTTCCEEECCSS--------CCCCCCTTTTTTCTTCCEEECTTS-CCC
T ss_pred HHcccccCcceeECCCC--------CCCcCCHhHhCCCCCCCEEECCCC-cCC
Confidence 3 456777777766 45555554 22 34788888877 344
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=361.98 Aligned_cols=307 Identities=15% Similarity=0.162 Sum_probs=243.8
Q ss_pred CCCCCCCCCC-CCCCCcEEECCCCCCCCc-----cCCC-----CcccCcccc--CCCCCcEEeccCCCCCCCCCC-CCCC
Q 004022 101 YPLRTLPSNF-KPKNLVELNLRCSKVEQP-----WEGE-----KACVPSSIQ--NFKYLSALSFKGCQSLRSFPS-NLHF 166 (779)
Q Consensus 101 n~l~~lp~~~-~l~~L~~L~L~~n~i~~l-----~~g~-----~~~lp~~~~--~l~~L~~L~Ls~n~~l~~~p~-~~~l 166 (779)
|.++.+|..+ ++++|++|+|++|+++.. |... ...+|..++ ++++|++|+|++|.+.+.+|. +.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 6666688877 889999999999988760 0000 001688877 999999999999988888886 5669
Q ss_pred CCCcEEEecCCc-Ccc-ccCCc----------CCCccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcccccccC
Q 004022 167 VCPVTINFSYCV-NLI-EFPQI----------SGKVTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKRISTSFC 232 (779)
Q Consensus 167 ~~L~~L~L~~~~-~l~-~~~~~----------~~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp~~l~ 232 (779)
++|+.|++++|. ... .+|.. +++|+.|++++|.+..+|. .++++++|+.|++++|.+. .+| .+.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 999999999997 544 45543 3489999999999999999 8999999999999999877 888 799
Q ss_pred CCCCCcEEecccccCCcccchhhhcCcc-CcEeecCCcCCCcCCccCCCCCC--CCEEeccCCCCCCCCCCCCCCchhHH
Q 004022 233 KLRSLVTLILLGCLNLEHFPEILEKMEH-LKRIYSDRTPITELPSSFENLPG--LEVLFVEDCSKLDNLPDNIGSLEYLY 309 (779)
Q Consensus 233 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~-L~~L~L~~n~i~~lp~~l~~l~~--L~~L~L~~~~~~~~lp~~l~~l~~L~ 309 (779)
.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++.+|..+..++. |+.|++++|.+.+.+|..
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l-------- 663 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI-------- 663 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC--------
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc--------
Confidence 9999999999999877 88888999999 99999999999999988877754 999999999887765532
Q ss_pred HHHhhcccCCcCCcccc--CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCC--------CCc
Q 004022 310 YILAAASAISQLPSSVA--LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYL--------SSL 379 (779)
Q Consensus 310 ~~~~~~~~~~~lp~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l--------~~L 379 (779)
+..+. .+++|+.|++++|.+. .+|...+..+++|+.|++++|.+..+|..+... ++|
T Consensus 664 ------------~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 664 ------------SCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp ------------SSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred ------------hhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence 11122 3457889999999887 455555667888999999999888887765432 389
Q ss_pred cEEEEecCCCccCChhcc--CCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCC
Q 004022 380 EILYLSGNNFESLPAIIK--QMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCK 432 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp~~l~--~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~ 432 (779)
+.|+|++|+++.+|..+. .+++|+.|+|++|.+.+ +|.. +++|+.|++++|+
T Consensus 731 ~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred cEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 999999999998888886 88999999999988876 5542 3667777776643
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=353.61 Aligned_cols=470 Identities=18% Similarity=0.101 Sum_probs=360.2
Q ss_pred EEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCC-CC
Q 004022 26 GIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYP-LR 104 (779)
Q Consensus 26 ~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~-l~ 104 (779)
+...|+++.....++. -.++|+.|+|++|.++ ...+..+..+ .+|++|++++|. +.
T Consensus 6 ~~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~------------------~i~~~~~~~l-~~L~~LdLs~n~~~~ 62 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIR------------------TVTASSFPFL-EQLQLLELGSQYTPL 62 (844)
T ss_dssp TEEEEESCCCSSCCCS----SCTTCCEEEEESCCCC------------------EECSSSCSSC-CSCSEEEECTTCCCC
T ss_pred ceEEEccCCCCCCCCC----CCCCcCEEECCCCcCC------------------ccChhHCccc-ccCeEEeCCCCCCcc
Confidence 3467777777666765 4589999999999985 2346677778 599999999995 56
Q ss_pred CC-CCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC---CCCCCCCcEEEecCCcC
Q 004022 105 TL-PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS---NLHFVCPVTINFSYCVN 179 (779)
Q Consensus 105 ~l-p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~---~~~l~~L~~L~L~~~~~ 179 (779)
.+ |..| ++++|++|+|++|.++.+ .|.+|+++++|++|+|++|.+...+|. +.++++|++|++++|..
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSSKIYFL-------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTCCCCEE-------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCccc-------CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence 77 5566 899999999999999986 688999999999999999997765554 67899999999999987
Q ss_pred ccccC----CcCCCccEEEecCcCCccc-CcccCCC--CCccEEeeeCCCCCcccccccCCCCC------CcEEeccccc
Q 004022 180 LIEFP----QISGKVTRLYLGQSAIEEV-PSSIECL--TDLEVLDLRGCKRLKRISTSFCKLRS------LVTLILLGCL 246 (779)
Q Consensus 180 l~~~~----~~~~~L~~L~L~~n~i~~l-p~~l~~l--~~L~~L~L~~~~~~~~lp~~l~~l~~------L~~L~L~~~~ 246 (779)
....+ ..+.+|+.|++++|.+..+ +..++.+ ++|+.|++++|.+.+..|..+..+.+ |++|++++|.
T Consensus 136 ~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 66443 3457899999999999654 5566666 89999999999998888877766665 9999999997
Q ss_pred CCcccchhhhc--------------------------------------CccCcEeecCCcCCCcCC-ccCCCCCCCCEE
Q 004022 247 NLEHFPEILEK--------------------------------------MEHLKRIYSDRTPITELP-SSFENLPGLEVL 287 (779)
Q Consensus 247 ~~~~~p~~l~~--------------------------------------l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L 287 (779)
.....+..+.. .++|+.|++++|.+..++ ..+..+++|+.|
T Consensus 216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 295 (844)
T 3j0a_A 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295 (844)
T ss_dssp SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence 65544433321 267899999999988664 458889999999
Q ss_pred eccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCC
Q 004022 288 FVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366 (779)
Q Consensus 288 ~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l 366 (779)
++++|.+.+..|..+..+++|+. .+.+|......|..+..+++|+.|++++|.+....+. .+..+++|+.|++++|.+
T Consensus 296 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ-TFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS-CSCSCCCCCEEEEETCCS
T ss_pred ECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh-hhcCCCCCCEEECCCCCC
Confidence 99999888888888888888888 5555554455577888899999999999987665444 367889999999999988
Q ss_pred ccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCC----CCCCCccEEEEecCCCCCCC----C
Q 004022 367 REIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLIDCKMLQSL----P 438 (779)
Q Consensus 367 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~----~~~~~L~~L~l~~c~~l~~l----p 438 (779)
+.++. +++|+.|++++|+++.+|.. ..+++.|++++|.+.+.-. ..+++|+.|++++|...... +
T Consensus 375 ~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 375 TTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp CCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred CcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 87654 78899999999999888753 5678899999988766322 14688999999999754322 1
Q ss_pred CCCCCccEEEeeCCCCCCCC-----CC---CCCCccEEeeecCcCCcccCC----CCCCccEEEEecCCCCCCccccc--
Q 004022 439 VLPFCLESLDLTGCNMLRSL-----PE---LPLCLQYLNLEDCNMLRSLPE----LPLCLQLLTVRNCNRLQSLPEIL-- 504 (779)
Q Consensus 439 ~l~~~L~~L~ls~n~~l~~l-----~~---~~~~L~~L~l~~c~~L~~l~~----~~~sL~~L~i~~C~~L~~lp~~l-- 504 (779)
....+|++|++++|.+.... +. .+++|++|++++|. +..++. .+++|+.|++++| +++.+|...
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 525 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP 525 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc-ccccChhHccchhhhheeECCCC-CCCccChhhhh
Confidence 22348999999999886332 22 23789999999984 444442 3579999999996 678777543
Q ss_pred cCCcccchhhhhhhccCCCCCcccccccccccceeeccc
Q 004022 505 LCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTN 543 (779)
Q Consensus 505 ~~L~~L~~~~~~~l~~~~p~l~~lp~~l~~~l~~l~~~~ 543 (779)
.+|+.|++++| .+...+...-..+..+.+.+
T Consensus 526 ~~L~~L~Ls~N--------~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 526 ANLEILDISRN--------QLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp SCCCEEEEEEE--------CCCCCCSCCCSSCCEEEEEE
T ss_pred ccccEEECCCC--------cCCCCChhHhCCcCEEEecC
Confidence 58999999988 23222222122466677654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=344.47 Aligned_cols=448 Identities=18% Similarity=0.199 Sum_probs=249.9
Q ss_pred ecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC
Q 004022 30 DLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN 109 (779)
Q Consensus 30 d~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~ 109 (779)
|++++....+.+.+|.++++||+|++++|.++ ...|..+..+ .+|++|++++|.++.+|..
T Consensus 32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 32 DLSFNKITYIGHGDLRACANLQVLILKSSRIN------------------TIEGDAFYSL-GSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp ECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------------------EECTTTTTTC-TTCCEEECTTSCCCSCCHH
T ss_pred ECcCCccCccChhhhhcCCcccEEECCCCCcC------------------ccChhhcccc-ccCCEEECCCCccCccCHH
Confidence 33444444444555555666666666655553 1222344444 3666666666666655543
Q ss_pred -C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC--CCCCCCCCcEEEecCCcCccccCC
Q 004022 110 -F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP--SNLHFVCPVTINFSYCVNLIEFPQ 185 (779)
Q Consensus 110 -~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p--~~~~l~~L~~L~L~~~~~l~~~~~ 185 (779)
+ .+++|++|++++|.++.+. .|..++++++|++|++++|...+.+| .+.++++|++|++++|......|.
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLG------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSC------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred HhccCCCCcEEECCCCcccccc------hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 3 5566666666666655320 34455566666666666665444444 244566666666666655544444
Q ss_pred cCC---CccEEEecCcCCcccCccc-CCCCCccEEeeeCCCCCccc--c-cccCCCCCCcEEecccccCCcccc----hh
Q 004022 186 ISG---KVTRLYLGQSAIEEVPSSI-ECLTDLEVLDLRGCKRLKRI--S-TSFCKLRSLVTLILLGCLNLEHFP----EI 254 (779)
Q Consensus 186 ~~~---~L~~L~L~~n~i~~lp~~l-~~l~~L~~L~L~~~~~~~~l--p-~~l~~l~~L~~L~L~~~~~~~~~p----~~ 254 (779)
.+. +|+.|++++|.+..+|..+ +.+++|++|++++|.+.+.. | .....+++|+.|++++|...+..+ ..
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 432 3455556665555555433 34556666666665544321 1 112234556666666655443222 22
Q ss_pred hhcCccCcEeecCCcCCCcCCc-------cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 255 LEKMEHLKRIYSDRTPITELPS-------SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 255 l~~l~~L~~L~L~~n~i~~lp~-------~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
+..+++|+.+++++|.+..++. .+..+++|+.|++.++.+.... ....++.....
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~------------------~~~~l~~~~~~ 308 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY------------------LFYDLSTVYSL 308 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG------------------GSCCCCHHHHH
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh------------------hcccchhhhhh
Confidence 3445566666666655543321 1344555666666554322110 01112222334
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CC---cccCCCCCccEEEEecCCCccCC---hhccCCC
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IP---QEIAYLSSLEILYLSGNNFESLP---AIIKQMS 400 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p---~~l~~l~~L~~L~Ls~n~l~~lp---~~l~~l~ 400 (779)
.++|+.|++++|.+. .+|...+..+++|+.|++++|.+.+ +| ..++.+++|++|++++|+++.++ ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 456777777777765 3444434567777777777777766 32 23566777777777777777665 3467777
Q ss_pred CCCEEEcCCCCCCCcCCC---CCCCccEEEEecCCCCCCCCC-CCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCcCC
Q 004022 401 QLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLPV-LPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNML 476 (779)
Q Consensus 401 ~L~~L~Ls~n~~~~~~~~---~~~~L~~L~l~~c~~l~~lp~-l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~~L 476 (779)
+|++|++++|.+. .+|. .+++|++|++++|. +..+|. +|.+|++|++++|++.+.+ ..+++|++|++++| .+
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N-~l 463 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFS-LFLPRLQELYISRN-KL 463 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSS-CC
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhc-ccCChhcEEECCCC-cc
Confidence 7777777777665 4454 23667777777775 334442 4457888888888776643 34477888888876 45
Q ss_pred cccCCC--CCCccEEEEecCCCCCCccc-c---ccCCcccchhhhhhhccCCCCCcc
Q 004022 477 RSLPEL--PLCLQLLTVRNCNRLQSLPE-I---LLCLQELDASVLEKLSKHSPDLQW 527 (779)
Q Consensus 477 ~~l~~~--~~sL~~L~i~~C~~L~~lp~-~---l~~L~~L~~~~~~~l~~~~p~l~~ 527 (779)
+.+|.. +++|+.|++++| .++.+|+ . +.+|+.|++.+| .+...||.+.+
T Consensus 464 ~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~ 518 (549)
T 2z81_A 464 KTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTN-PWDCSCPRIDY 518 (549)
T ss_dssp SSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSS-CBCCCHHHHHH
T ss_pred CcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCC-CccCCCccHHH
Confidence 566642 567888888875 4555543 2 346677777776 34455554433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=342.45 Aligned_cols=460 Identities=15% Similarity=0.096 Sum_probs=319.7
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
.|.+++....+++..+ ++|++|++++|.++ ...|..+..+ ++|++|++++|.++.++.
T Consensus 10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~------------------~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~ 67 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKIT------------------YIGHGDLRAC-ANLQVLILKSSRINTIEG 67 (549)
T ss_dssp EECTTSCCSSCCSCCC---TTCCEEECCSSCCC------------------EECSSTTSSC-TTCCEEECTTSCCCEECT
T ss_pred EECCCCccccccccCC---CCccEEECcCCccC------------------ccChhhhhcC-CcccEEECCCCCcCccCh
Confidence 3555555556665433 68999999999884 2335567777 589999999999988874
Q ss_pred -CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCC-CCCCCCCCcEEEecCCcCccccC
Q 004022 109 -NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFP-SNLHFVCPVTINFSYCVNLIEFP 184 (779)
Q Consensus 109 -~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p-~~~~l~~L~~L~L~~~~~l~~~~ 184 (779)
.| .+++|++|+|++|+++.+ .|.+|+++++|++|++++|.+.. ..| .+.++++|++|++++|...+.+|
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSL-------SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSC-------CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred hhccccccCCEEECCCCccCcc-------CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 45 889999999999998874 45568899999999999998654 333 46678899999999887655444
Q ss_pred C-c---CCCccEEEecCcCCcc-cCcccCCCCCccEEeeeCCCCCcccccc-cCCCCCCcEEecccccCCccc---chhh
Q 004022 185 Q-I---SGKVTRLYLGQSAIEE-VPSSIECLTDLEVLDLRGCKRLKRISTS-FCKLRSLVTLILLGCLNLEHF---PEIL 255 (779)
Q Consensus 185 ~-~---~~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~---p~~l 255 (779)
. . +.+|+.|++++|.+.. +|..++.+++|++|++++|... .+|.. +..+++|++|++++|.+.+.. ....
T Consensus 141 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 219 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219 (549)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSC
T ss_pred HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchh
Confidence 2 2 3456666777766654 4556666677777777766543 23332 244666777777766655421 1122
Q ss_pred hcCccCcEeecCCcCCC-----cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 256 EKMEHLKRIYSDRTPIT-----ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 256 ~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
..+++|+.|++++|.++ .++..+..+++|+.+++++|...+...- . ......+..+++
T Consensus 220 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~--~---------------~~~~~~~~~l~~ 282 (549)
T 2z81_A 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF--N---------------PSESDVVSELGK 282 (549)
T ss_dssp CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC--C---------------CCTTTCCCCCTT
T ss_pred hhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc--c---------------ccchhhhhhhcc
Confidence 34566677777666655 2333445566777777776654332100 0 001123456788
Q ss_pred cCeeeccCCCCCCccCh----hhccCCCCCcEEEecCCCCccCCccc-CCCCCccEEEEecCCCcc-CC---hhccCCCC
Q 004022 331 LRSLDSSHCKGLESFPR----TFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFES-LP---AIIKQMSQ 401 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~----~~~~~l~~L~~L~Ls~~~l~~~p~~l-~~l~~L~~L~Ls~n~l~~-lp---~~l~~l~~ 401 (779)
|+.|++.++.+...... ......++|+.|++++|.+..+|..+ ..+++|++|++++|.++. +| ..++.+++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 99999998876543210 01234578999999999999999876 579999999999999984 33 34788999
Q ss_pred CCEEEcCCCCCCCcC-----CCCCCCccEEEEecCCCCCCCCC---CCCCccEEEeeCCCCCCCCCCCCCCccEEeeecC
Q 004022 402 LRFIHLEDFNMLQSL-----PELPLCLKYLHLIDCKMLQSLPV---LPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDC 473 (779)
Q Consensus 402 L~~L~Ls~n~~~~~~-----~~~~~~L~~L~l~~c~~l~~lp~---l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c 473 (779)
|+.|++++|.+.+.. ...+++|++|++++|+ +..+|. ...+|++|++++|.+.......+++|++|++++|
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSS
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCC
Confidence 999999999986532 3456899999999995 446664 2348999999999977544445679999999997
Q ss_pred cCCcccCCCCCCccEEEEecCCCCCCcccc--ccCCcccchhhhhhhccCCCCCcccccc-cc--cccceeecccccc
Q 004022 474 NMLRSLPELPLCLQLLTVRNCNRLQSLPEI--LLCLQELDASVLEKLSKHSPDLQWAPES-LK--SAAICFEFTNCLK 546 (779)
Q Consensus 474 ~~L~~l~~~~~sL~~L~i~~C~~L~~lp~~--l~~L~~L~~~~~~~l~~~~p~l~~lp~~-l~--~~l~~l~~~~C~~ 546 (779)
.+..++..+++|++|++++| +++.+|.. +.+|+.|+++++ .+..+|.. +. ..++.+.+.+|+-
T Consensus 442 -~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 442 -NLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN--------QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -CCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS--------CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -ChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC--------ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 46666677889999999996 67889864 568899998887 23333322 22 3478888888764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=343.23 Aligned_cols=375 Identities=15% Similarity=0.183 Sum_probs=299.4
Q ss_pred CCceEEEccCCCCC-CCCCCC-CCCCCcEEECCCCCCC------C-----------------------------------
Q 004022 91 KKLRYLHWDTYPLR-TLPSNF-KPKNLVELNLRCSKVE------Q----------------------------------- 127 (779)
Q Consensus 91 ~~L~~L~l~~n~l~-~lp~~~-~l~~L~~L~L~~n~i~------~----------------------------------- 127 (779)
.+++.|+++++.++ .+|..+ .+++|++|+|++|.+. .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 38999999999996 788777 9999999999999651 0
Q ss_pred -------------------------cc-----CCCCcccCccccCCCCCcEEeccCCCCCCC-----------------C
Q 004022 128 -------------------------PW-----EGEKACVPSSIQNFKYLSALSFKGCQSLRS-----------------F 160 (779)
Q Consensus 128 -------------------------l~-----~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~-----------------~ 160 (779)
++ .... .+|.+|+++++|++|+|++|.+.+. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~-~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE-EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCc-cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 00 0011 1788899999999999999986663 6
Q ss_pred CC-CC--CCCCCcEEEecCCcCccccCCcC---CCccEEEecCcC-Cc--ccCcccCCC------CCccEEeeeCCCCCc
Q 004022 161 PS-NL--HFVCPVTINFSYCVNLIEFPQIS---GKVTRLYLGQSA-IE--EVPSSIECL------TDLEVLDLRGCKRLK 225 (779)
Q Consensus 161 p~-~~--~l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~L~~n~-i~--~lp~~l~~l------~~L~~L~L~~~~~~~ 225 (779)
|. +. ++++|++|++++|...+.+|..+ .+|+.|++++|. +. .+|..++.+ ++|++|++++|.+.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 76 44 68999999999998888888665 467888888887 76 488877766 88899999888876
Q ss_pred cccc--ccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCC-CCEEeccCCCCCCCCCCCC
Q 004022 226 RIST--SFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPG-LEVLFVEDCSKLDNLPDNI 302 (779)
Q Consensus 226 ~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~-L~~L~L~~~~~~~~lp~~l 302 (779)
.+|. .++.+++|++|++++|.+.+.+| .++.+++|++|++++|.++.+|..+..+++ |+.|++++|.+. .+|..+
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 7787 78888889999998888887888 788888889999998888888888888888 999988887765 444432
Q ss_pred CCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhcc-------CCCCCcEEEecCCCCccCCccc-C
Q 004022 303 GSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLL-------GLSAMGLLHISDYAVREIPQEI-A 374 (779)
Q Consensus 303 ~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-------~l~~L~~L~Ls~~~l~~~p~~l-~ 374 (779)
.. ..+++|+.|++++|.+.+..|.. +. .+++|+.|++++|.++.+|..+ .
T Consensus 397 ~~---------------------~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 454 (636)
T 4eco_A 397 DA---------------------KSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454 (636)
T ss_dssp CT---------------------TCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred hh---------------------cccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence 21 12448999999999998876654 33 5679999999999999988764 5
Q ss_pred CCCCccEEEEecCCCccCChhccC--------CCCCCEEEcCCCCCCCcCCC-----CCCCccEEEEecCCCCCCCCC--
Q 004022 375 YLSSLEILYLSGNNFESLPAIIKQ--------MSQLRFIHLEDFNMLQSLPE-----LPLCLKYLHLIDCKMLQSLPV-- 439 (779)
Q Consensus 375 ~l~~L~~L~Ls~n~l~~lp~~l~~--------l~~L~~L~Ls~n~~~~~~~~-----~~~~L~~L~l~~c~~l~~lp~-- 439 (779)
.+++|++|+|++|.++.+|..+.. +++|+.|++++|.+. .+|. .+++|++|++++|+... +|.
T Consensus 455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~ 532 (636)
T 4eco_A 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532 (636)
T ss_dssp TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhh
Confidence 689999999999999998864332 239999999999988 5664 35789999999997654 663
Q ss_pred --CCCCccEEEee------CCCCCCCCCCC---CCCccEEeeecCcCCcccCC-CCCCccEEEEecCC
Q 004022 440 --LPFCLESLDLT------GCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPE-LPLCLQLLTVRNCN 495 (779)
Q Consensus 440 --l~~~L~~L~ls------~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~~-~~~sL~~L~i~~C~ 495 (779)
++ +|++|+++ +|.+.+.+|.. +++|++|++++|.. +.+|. ..++|+.|++++|+
T Consensus 533 ~~l~-~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 533 LNSS-TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp GGCS-SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCT
T ss_pred hcCC-CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCC
Confidence 33 89999994 57778888864 48899999999876 88886 45799999999975
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=333.60 Aligned_cols=439 Identities=17% Similarity=0.146 Sum_probs=333.0
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeec-CCCCCCCCCCceEEEccCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n~l~~l 106 (779)
.||++++....+.+.+|.++++|++|++++|.++ .+ +..+..+ .+|++|++++|.++.+
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------------------~i~~~~~~~l-~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------------------TIEDGAYQSL-SHLSTLILTGNPIQSL 91 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-------------------EECTTTTTTC-TTCCEEECTTCCCCEE
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCC-------------------ccCcccccCc-hhCCEEeCcCCcCCcc
Confidence 3566777767788889999999999999999884 34 3456666 5999999999999888
Q ss_pred CC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCC-CCCCCCCcEEEecCCcCccc
Q 004022 107 PS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPS-NLHFVCPVTINFSYCVNLIE 182 (779)
Q Consensus 107 p~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~-~~~l~~L~~L~L~~~~~l~~ 182 (779)
|. .| .+++|++|++++|+++.+ .+..++++++|++|++++|.+.. .+|. +.++++|++|++++|.....
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCS-------TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CHhhhcCccccccccccccccccC-------CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 74 45 899999999999999874 23368899999999999998665 4565 56699999999999987655
Q ss_pred cCCcC---CCc----cEEEecCcCCcccCcccCCCCCccEEeeeCCCCC-cccccccCCCCC------------------
Q 004022 183 FPQIS---GKV----TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRL-KRISTSFCKLRS------------------ 236 (779)
Q Consensus 183 ~~~~~---~~L----~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~------------------ 236 (779)
.+..+ .+| +.|++++|.+..++.......+|+.|++++|... ..++..+..++.
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 45444 345 7889999999888765555558999999887321 111222222222
Q ss_pred --------------CcEEecccc-cCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCC
Q 004022 237 --------------LVTLILLGC-LNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301 (779)
Q Consensus 237 --------------L~~L~L~~~-~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 301 (779)
++.++++++ ...+..|..+..+++|++|++++|.++.+|..+..+ +|+.|++++|.+. .+|.
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~- 321 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT- 321 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB-
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc-
Confidence 344555555 445566778888999999999999999999988888 9999999998876 5554
Q ss_pred CCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccC-hhhccCCCCCcEEEecCCCCccCCcccCCCCCc
Q 004022 302 IGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP-RTFLLGLSAMGLLHISDYAVREIPQEIAYLSSL 379 (779)
Q Consensus 302 l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L 379 (779)
..+++|+. .+.++......+. ..+++|++|++++|.+..... ...+..+++|+.|++++|.+..++..+..+++|
T Consensus 322 -~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L 398 (570)
T 2z63_A 322 -LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398 (570)
T ss_dssp -CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred -ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCC
Confidence 35566666 4555544444443 678999999999999876531 123568999999999999999988779999999
Q ss_pred cEEEEecCCCccCC--hhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCC-CCCC----CCCCCccEEEe
Q 004022 380 EILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKML-QSLP----VLPFCLESLDL 449 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l-~~lp----~l~~~L~~L~l 449 (779)
++|++++|.++..+ ..+..+++|++|++++|.+.+..|.. +++|++|++++|... ..+| .++ +|++|++
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~~L~l 477 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDL 477 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEEC
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-CCCEEEC
Confidence 99999999998664 46889999999999999998877764 478999999999754 2344 333 8999999
Q ss_pred eCCCCCCCCCCC---CCCccEEeeecCcCCcccC-C---CCCCccEEEEecCCCCCCcc
Q 004022 450 TGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLP-E---LPLCLQLLTVRNCNRLQSLP 501 (779)
Q Consensus 450 s~n~~l~~l~~~---~~~L~~L~l~~c~~L~~l~-~---~~~sL~~L~i~~C~~L~~lp 501 (779)
++|.+.+..|.. +++|++|++++|. +..++ . .+++|+.|++++|+--...|
T Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 999998887754 3789999999985 44444 2 34789999999976444433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=334.13 Aligned_cols=460 Identities=16% Similarity=0.175 Sum_probs=353.0
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
.+|+++.....++.. + .++++.|++++|.+++ ..+..+..+ ++|++|++++|.++.++
T Consensus 11 ~~~c~~~~l~~ip~~-l--~~~l~~L~Ls~n~l~~------------------~~~~~~~~l-~~L~~L~Ls~n~i~~i~ 68 (570)
T 2z63_A 11 TYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRH------------------LGSYSFFSF-PELQVLDLSRCEIQTIE 68 (570)
T ss_dssp EEECCSSCCSSCCSS-S--CSSCCEEECCSCCCCE------------------ECTTTTTTC-SSCCEEECTTCCCCEEC
T ss_pred EEEeCCCCccccCCC-c--cccccEEEccCCccCc------------------cChhHhhCC-CCceEEECCCCcCCccC
Confidence 466666655566642 2 2579999999999851 223466677 59999999999999887
Q ss_pred CC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCcc-c
Q 004022 108 SN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLI-E 182 (779)
Q Consensus 108 ~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~-~ 182 (779)
.. | ++++|++|+|++|+++.+ .|.+|+++++|++|++++|.+. .++. +.++++|++|++++|.... .
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (570)
T 2z63_A 69 DGAYQSLSHLSTLILTGNPIQSL-------ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140 (570)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred cccccCchhCCEEeCcCCcCCcc-------CHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceec
Confidence 54 5 899999999999999875 5678999999999999999854 4443 7789999999999998765 4
Q ss_pred cCCc---CCCccEEEecCcCCcccC-cccCCCCCc----cEEeeeCCCCCcccccccCCCCCCcEEecccccCC-cccch
Q 004022 183 FPQI---SGKVTRLYLGQSAIEEVP-SSIECLTDL----EVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL-EHFPE 253 (779)
Q Consensus 183 ~~~~---~~~L~~L~L~~n~i~~lp-~~l~~l~~L----~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~-~~~p~ 253 (779)
+|.. +.+|+.|++++|.+..++ ..++.+++| +.|++++|.+.+..|..+... +|+.|++++|... ..++.
T Consensus 141 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH
T ss_pred ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhh
Confidence 5654 468999999999998775 467777777 899999998877777766654 8999999887432 22333
Q ss_pred hhhcCccCc--------------------------------EeecCCc-CCC-cCCccCCCCCCCCEEeccCCCCCCCCC
Q 004022 254 ILEKMEHLK--------------------------------RIYSDRT-PIT-ELPSSFENLPGLEVLFVEDCSKLDNLP 299 (779)
Q Consensus 254 ~l~~l~~L~--------------------------------~L~L~~n-~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp 299 (779)
.+..+++++ .++++++ .+. .+|..+..+++|+.|++++|.+. .+|
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~ 298 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK 298 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCC
T ss_pred hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhh
Confidence 444444333 3333333 222 45667888999999999998765 688
Q ss_pred CCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC---CcccCCC
Q 004022 300 DNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI---PQEIAYL 376 (779)
Q Consensus 300 ~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~---p~~l~~l 376 (779)
..+..+ +|+......+.+..+|. ..+++|+.|++++|.+....+. ..+++|+.|++++|.++.. +..+..+
T Consensus 299 ~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 299 DFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp BCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred hhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCcccccccccccc
Confidence 888888 88884444445567776 4789999999999998776654 5789999999999999875 6778899
Q ss_pred CCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCCCCCCCC----CCCCccEEE
Q 004022 377 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKMLQSLPV----LPFCLESLD 448 (779)
Q Consensus 377 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~l~~lp~----l~~~L~~L~ 448 (779)
++|++|++++|.++.+|..+..+++|+.|++++|.+.+..+. ..++|++|++++|......|. ++ +|++|+
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~ 451 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLK 451 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEE
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC-cCcEEE
Confidence 999999999999998887799999999999999998876552 358899999999976554443 33 899999
Q ss_pred eeCCCCC-CCCCCC---CCCccEEeeecCcCCcccCCC---CCCccEEEEecCCCCCCccc-c---ccCCcccchhhhhh
Q 004022 449 LTGCNML-RSLPEL---PLCLQYLNLEDCNMLRSLPEL---PLCLQLLTVRNCNRLQSLPE-I---LLCLQELDASVLEK 517 (779)
Q Consensus 449 ls~n~~l-~~l~~~---~~~L~~L~l~~c~~L~~l~~~---~~sL~~L~i~~C~~L~~lp~-~---l~~L~~L~~~~~~~ 517 (779)
+++|.+. +.+|.. +++|++|++++|......|.. +++|+.|++++| +++.+|. . +.+|+.|++.++ .
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~ 529 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN-P 529 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC-c
Confidence 9999987 456653 489999999998655554543 578999999997 5666663 3 357788888877 5
Q ss_pred hccCCCCCccc
Q 004022 518 LSKHSPDLQWA 528 (779)
Q Consensus 518 l~~~~p~l~~l 528 (779)
+...||...++
T Consensus 530 ~~~~~~~~~~~ 540 (570)
T 2z63_A 530 WDCSCPRIDYL 540 (570)
T ss_dssp BCCCTTTTHHH
T ss_pred ccCCCcchHHH
Confidence 67778776543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=318.79 Aligned_cols=382 Identities=21% Similarity=0.260 Sum_probs=204.1
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCC-------------cEEeccCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYL-------------SALSFKGCQS 156 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L-------------~~L~Ls~n~~ 156 (779)
.+|++|++++|.++.+|..+ ++++|++|++++|.+... +|.+++++++| ++|++++|.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~-------~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~- 82 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERN-------APPGNGEQREMAVSRLRDCLDRQAHELELNNLG- 82 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHT-------SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCccccc-------CCcccccchhcchhhhhhhhccCCCEEEecCCc-
Confidence 58999999999999999888 899999999999988743 78888888865 999999988
Q ss_pred CCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCC
Q 004022 157 LRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRS 236 (779)
Q Consensus 157 l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 236 (779)
++.+|.. .++|++|++++|.... +|....+|+.|++++|.+..++... ++|++|++++|.+.+ +| .++++++
T Consensus 83 l~~lp~~--~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 83 LSSLPEL--PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp CSCCCSC--CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred cccCCCC--cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 5556663 4789999999887655 7888889999999999998877532 689999999988765 77 4889999
Q ss_pred CcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcc
Q 004022 237 LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAAS 316 (779)
Q Consensus 237 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~ 316 (779)
|++|++++|.+.+ +|.. ..+|++|++++|.++.+| .++.+++|+.|++++|.+.+ +|... ++|+......+
T Consensus 155 L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n 225 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNN 225 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSS
T ss_pred CCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCC
Confidence 9999999987665 5543 358999999999999988 58999999999999987654 44322 12222111122
Q ss_pred cCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhc
Q 004022 317 AISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAII 396 (779)
Q Consensus 317 ~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l 396 (779)
.+..+|. ++.+++|++|++++|.+.+... .+++|+.|++++|.+.++|.. +++|++|++++|.++.+|..
T Consensus 226 ~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~- 295 (454)
T 1jl5_A 226 ILEELPE-LQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL- 295 (454)
T ss_dssp CCSSCCC-CTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC-
T ss_pred cCCcccc-cCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc-
Confidence 2333442 4444455555555544443211 224445555555544444432 24445555555544443321
Q ss_pred cCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEecCCCCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCcCC
Q 004022 397 KQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNML 476 (779)
Q Consensus 397 ~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c~~l~~lp~l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~~L 476 (779)
.++|+.|++++|.+.+ ++..+++|++|++++|.. ..+|..+.+|++|++++|.+. .+|..+++|++|++++|. +
T Consensus 296 --~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l-~~lp~~~~~L~~L~L~~N~l~-~lp~~l~~L~~L~L~~N~-l 369 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKL-IELPALPPRLERLIASFNHLA-EVPELPQNLKQLHVEYNP-L 369 (454)
T ss_dssp --CTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSC-C
T ss_pred --CCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcc-ccccccCCcCCEEECCCCccc-cccchhhhccEEECCCCC-C
Confidence 1344455555444433 233334445555544432 224433334555555544443 233333445555554432 2
Q ss_pred cccCCCCCCccEEEEecCCCCCCccccccCCcccchhhh
Q 004022 477 RSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVL 515 (779)
Q Consensus 477 ~~l~~~~~sL~~L~i~~C~~L~~lp~~l~~L~~L~~~~~ 515 (779)
..+|..|.++..|. .+.....+|..+.+|+.|+++++
T Consensus 370 ~~l~~ip~~l~~L~--~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 370 REFPDIPESVEDLR--MNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp SSCCCCCTTCCEEE--CCC--------------------
T ss_pred CcCCCChHHHHhhh--hcccccccccccCcCCEEECCCC
Confidence 22222233333322 12233344444466777777776
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=326.42 Aligned_cols=408 Identities=16% Similarity=0.133 Sum_probs=288.7
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
||++++....+.+.+|.++++|++|++++|.++ ...|+.+..+ .+|++|++++|.++.+|.
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------------------~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQ------------------YLDISVFKFN-QELEYLDLSHNKLVKISC 86 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC------------------EEEGGGGTTC-TTCCEEECCSSCCCEEEC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccC------------------CcChHHhhcc-cCCCEEecCCCceeecCc
Confidence 455555555677777888888888888888774 2235566677 488888888888888887
Q ss_pred CCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC--cEEEecCCcC--ccccC
Q 004022 109 NFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP--VTINFSYCVN--LIEFP 184 (779)
Q Consensus 109 ~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L--~~L~L~~~~~--l~~~~ 184 (779)
. .+++|++|+|++|.++.+ . +|..|+++++|++|++++|.+.. ..+..+++| +.|++++|.. ....|
T Consensus 87 ~-~l~~L~~L~L~~N~l~~~---~---~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~ 157 (520)
T 2z7x_B 87 H-PTVNLKHLDLSFNAFDAL---P---ICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDP 157 (520)
T ss_dssp C-CCCCCSEEECCSSCCSSC---C---CCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCT
T ss_pred c-ccCCccEEeccCCccccc---c---chhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccc
Confidence 7 888888888888888752 1 56788888888888888887544 345556777 8888888877 66667
Q ss_pred CcCCCcc----EEEecCcCCc-ccC-cccCCCCCccEEeeeCCC-------CCcccccccCCCCCCcEEecccccCCccc
Q 004022 185 QISGKVT----RLYLGQSAIE-EVP-SSIECLTDLEVLDLRGCK-------RLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 185 ~~~~~L~----~L~L~~n~i~-~lp-~~l~~l~~L~~L~L~~~~-------~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
..+..++ .+++++|.+. .++ ..+.++++|+.|++++|. ..+.+| .+..+++|+.|++++|...+..
T Consensus 158 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHH
T ss_pred ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHH
Confidence 7776654 5566666653 233 356678888888888876 445555 5777888888888887765433
Q ss_pred chhhh---cCccCcEeecCCcCCC-cCCccC-----CCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC
Q 004022 252 PEILE---KMEHLKRIYSDRTPIT-ELPSSF-----ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP 322 (779)
Q Consensus 252 p~~l~---~l~~L~~L~L~~n~i~-~lp~~l-----~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp 322 (779)
+..+. ..++|++|++++|.++ .+|..+ +.+++|+.+++++|.+ .+|.
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~---------------------- 292 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ---------------------- 292 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT----------------------
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch----------------------
Confidence 22221 2458888888888888 788877 7888888888888765 3331
Q ss_pred ccccCc---cccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCcc---CChh
Q 004022 323 SSVALS---NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFES---LPAI 395 (779)
Q Consensus 323 ~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~---lp~~ 395 (779)
..+..+ .+|+.|++++|.+..... ...+++|++|++++|.+++ +|..+..+++|++|++++|+++. +|..
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred hhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence 112222 568999999998765431 2578899999999999988 78888999999999999999985 4567
Q ss_pred ccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCCCCCCC-CCCCCccEEEeeCCCCCCCCCC---CCCCccE
Q 004022 396 IKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKMLQSLP-VLPFCLESLDLTGCNMLRSLPE---LPLCLQY 467 (779)
Q Consensus 396 l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~l~~lp-~l~~~L~~L~ls~n~~l~~l~~---~~~~L~~ 467 (779)
+..+++|++|++++|.+.+.+|. .+++|++|++++|.....+| .++.+|++|++++|.+. .+|. .+++|++
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQE 448 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence 88999999999999998875553 24677777777776554444 23346777777777665 4443 2366677
Q ss_pred EeeecCcCCcccCCC----CCCccEEEEecC
Q 004022 468 LNLEDCNMLRSLPEL----PLCLQLLTVRNC 494 (779)
Q Consensus 468 L~l~~c~~L~~l~~~----~~sL~~L~i~~C 494 (779)
|++++| .++.+|.. +++|+.|+++++
T Consensus 449 L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 449 LNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 777665 34455532 235555555554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=313.55 Aligned_cols=406 Identities=19% Similarity=0.229 Sum_probs=203.5
Q ss_pred ChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCC-CCCCCC-CCCC---
Q 004022 40 DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR-TLPSNF-KPKN--- 114 (779)
Q Consensus 40 ~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~-~lp~~~-~l~~--- 114 (779)
.|+.+. .++||.|++++|.+. .+|..+..+ ++|++|++++|.+. .+|..+ .+.+
T Consensus 4 ~p~~~~-~~~L~~L~l~~n~l~-------------------~iP~~i~~L-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 62 (454)
T 1jl5_A 4 NPRNVS-NTFLQEPLRHSSNLT-------------------EMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAV 62 (454)
T ss_dssp ---------------------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHH
T ss_pred cccccc-cccchhhhcccCchh-------------------hCChhHhcc-cchhhhhccCCcccccCCcccccchhcch
Confidence 344443 466777777777663 455555555 35555555555543 455444 3333
Q ss_pred ----------CcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC
Q 004022 115 ----------LVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP 184 (779)
Q Consensus 115 ----------L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~ 184 (779)
|++|++++|.++. +|. -.++|++|++++|.+.+ +|.. +++|++|++++|... .++
T Consensus 63 l~l~~c~~~~l~~L~l~~~~l~~--------lp~---~~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~-~l~ 127 (454)
T 1jl5_A 63 SRLRDCLDRQAHELELNNLGLSS--------LPE---LPPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLK-ALS 127 (454)
T ss_dssp HHHHHHHHHTCSEEECTTSCCSC--------CCS---CCTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCS-CCC
T ss_pred hhhhhhhccCCCEEEecCCcccc--------CCC---CcCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccC-ccc
Confidence 2555555555554 222 12455555555555332 4432 255555555555332 333
Q ss_pred CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEe
Q 004022 185 QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRI 264 (779)
Q Consensus 185 ~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 264 (779)
....+|++|++++|.+..+| .++++++|++|++++|++.+ +|.. ..+|++|++++|.+.+ +| .++.+++|++|
T Consensus 128 ~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 128 DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAI 200 (454)
T ss_dssp SCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence 33345666666666665555 35566666666666655433 3432 2356666666655444 34 35556666666
Q ss_pred ecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCc
Q 004022 265 YSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES 344 (779)
Q Consensus 265 ~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 344 (779)
++++|.++.+|... ++|+.|++++|.+. .+|. ++.+++|+......+.+..+|.. +++|+.|++++|.+.+.
T Consensus 201 ~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 201 YADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp ECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCC
T ss_pred ECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCccccc
Confidence 66666665555432 35666666665444 4442 55555555522223334445542 47899999999988763
Q ss_pred cChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCCCCCcc
Q 004022 345 FPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLK 424 (779)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~ 424 (779)
+. .+++|+.|++++|.++++|.. .++|++|++++|.++.++.. .++|+.|++++|.+.+ +|..+++|+
T Consensus 273 -~~----~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~~~~L~ 340 (454)
T 1jl5_A 273 -PE----LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPALPPRLE 340 (454)
T ss_dssp -CC----CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCCCTTCC
T ss_pred -Cc----ccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-ccccCCcCC
Confidence 32 347899999999998886532 36899999999998876531 2589999999988776 777788999
Q ss_pred EEEEecCCCCCCCCCCCCCccEEEeeCCCCCC--CCCCCCCCccEEeeecCcCCcccCCCCCCccEEEEecCCCCCCccc
Q 004022 425 YLHLIDCKMLQSLPVLPFCLESLDLTGCNMLR--SLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPE 502 (779)
Q Consensus 425 ~L~l~~c~~l~~lp~l~~~L~~L~ls~n~~l~--~l~~~~~~L~~L~l~~c~~L~~l~~~~~sL~~L~i~~C~~L~~lp~ 502 (779)
+|++++|. ++.+|..+.+|++|++++|++.+ .+| ..+..|. .+.....+|..+++|+.|++++++ ++.+|.
T Consensus 341 ~L~L~~N~-l~~lp~~l~~L~~L~L~~N~l~~l~~ip---~~l~~L~--~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~ 413 (454)
T 1jl5_A 341 RLIASFNH-LAEVPELPQNLKQLHVEYNPLREFPDIP---ESVEDLR--MNSHLAEVPELPQNLKQLHVETNP-LREFPD 413 (454)
T ss_dssp EEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCC---TTCCEEE--CCC----------------------------
T ss_pred EEECCCCc-cccccchhhhccEEECCCCCCCcCCCCh---HHHHhhh--hcccccccccccCcCCEEECCCCc-CCcccc
Confidence 99999885 45677766789999999998877 555 3444443 345566677777888888888854 443333
Q ss_pred cccCCcccchhhh
Q 004022 503 ILLCLQELDASVL 515 (779)
Q Consensus 503 ~l~~L~~L~~~~~ 515 (779)
...+++.|++..+
T Consensus 414 iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 414 IPESVEDLRMNSE 426 (454)
T ss_dssp -------------
T ss_pred chhhHhheeCcCc
Confidence 3334555555544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=329.54 Aligned_cols=325 Identities=18% Similarity=0.191 Sum_probs=260.4
Q ss_pred cCCcC---CCccEEEecCcCCcc------------------cCcccC--CCCCccEEeeeCCCCCcccccccCCCCCCcE
Q 004022 183 FPQIS---GKVTRLYLGQSAIEE------------------VPSSIE--CLTDLEVLDLRGCKRLKRISTSFCKLRSLVT 239 (779)
Q Consensus 183 ~~~~~---~~L~~L~L~~n~i~~------------------lp~~l~--~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 239 (779)
+|..+ .+|+.|+|++|.+.. +|..++ ++++|++|+|++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66543 578888888888877 999988 9999999999999999999999999999999
Q ss_pred Eeccccc-CCc-ccchhhhcCc-------cCcEeecCCcCCCcCCc--cCCCCCCCCEEeccCCCCCCCCCCCCCCchhH
Q 004022 240 LILLGCL-NLE-HFPEILEKME-------HLKRIYSDRTPITELPS--SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYL 308 (779)
Q Consensus 240 L~L~~~~-~~~-~~p~~l~~l~-------~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 308 (779)
|+|++|. +.+ .+|..++.++ +|++|++++|.++.+|. .++.+++|+.|++++|.+. .+| .++.+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 9999998 666 7888877776 99999999999999999 8999999999999999887 788 88999999
Q ss_pred HHHHhhcccCCcCCccccCccc-cCeeeccCCCCCCccChhhccCC--CCCcEEEecCCCCccC-C---cccC--CCCCc
Q 004022 309 YYILAAASAISQLPSSVALSNM-LRSLDSSHCKGLESFPRTFLLGL--SAMGLLHISDYAVREI-P---QEIA--YLSSL 379 (779)
Q Consensus 309 ~~~~~~~~~~~~lp~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~Ls~~~l~~~-p---~~l~--~l~~L 379 (779)
+.+....+.+..+|..+..+++ |+.|++++|.+.. +|.. +... ++|+.|++++|.+... | ..+. .+++|
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCCc-Cchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 9944444555689988999999 9999999999884 4432 3333 4599999999998773 2 2233 34589
Q ss_pred cEEEEecCCCccCChhc-cCCCCCCEEEcCCCCCCCcCCC-CCC----------CccEEEEecCCCCCCCCC-C----CC
Q 004022 380 EILYLSGNNFESLPAII-KQMSQLRFIHLEDFNMLQSLPE-LPL----------CLKYLHLIDCKMLQSLPV-L----PF 442 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~~~~~~~~-~~~----------~L~~L~l~~c~~l~~lp~-l----~~ 442 (779)
+.|+|++|.++.+|..+ ..+++|+.|+|++|.+. .+|. .+. +|+.|++++|.. ..+|. + ..
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLP 753 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCGGGSTTTCT
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC-ccchHHhhhccCC
Confidence 99999999999999765 58999999999999887 5554 222 899999999954 46663 1 13
Q ss_pred CccEEEeeCCCCCCCCCC---CCCCccEEeeec------CcCCcccCCC---CCCccEEEEecCCCCCCccccc-cCCcc
Q 004022 443 CLESLDLTGCNMLRSLPE---LPLCLQYLNLED------CNMLRSLPEL---PLCLQLLTVRNCNRLQSLPEIL-LCLQE 509 (779)
Q Consensus 443 ~L~~L~ls~n~~l~~l~~---~~~~L~~L~l~~------c~~L~~l~~~---~~sL~~L~i~~C~~L~~lp~~l-~~L~~ 509 (779)
+|+.|++++|.+.+ +|. .+++|+.|++++ |.....+|.. +++|+.|++++|. ++.+|..+ .+|+.
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~~~L~~ 831 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLTPQLYI 831 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCCSSSCE
T ss_pred CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhcCCCCE
Confidence 89999999999887 564 348899999987 4444556643 5689999999875 48888754 47888
Q ss_pred cchhhh
Q 004022 510 LDASVL 515 (779)
Q Consensus 510 L~~~~~ 515 (779)
|++++|
T Consensus 832 LdLs~N 837 (876)
T 4ecn_A 832 LDIADN 837 (876)
T ss_dssp EECCSC
T ss_pred EECCCC
Confidence 888777
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=320.53 Aligned_cols=404 Identities=14% Similarity=0.103 Sum_probs=220.1
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+|..+. ++|++|++++|.++.++. .| .+++|++|+|++|+++.+ .|.+|+++++|++|+|++|.+.
T Consensus 14 ~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~- 82 (520)
T 2z7x_B 14 HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-------DISVFKFNQELEYLDLSHNKLV- 82 (520)
T ss_dssp SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-------EGGGGTTCTTCCEEECCSSCCC-
T ss_pred ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-------ChHHhhcccCCCEEecCCCcee-
Confidence 4554433 466777777777666653 33 666677777777766654 4556666777777777766633
Q ss_pred CCCCCCCCCCCcEEEecCCcCcc-ccCCc---CCCccEEEecCcCCcccCcccCCCCCc--cEEeeeCCCC--Ccccccc
Q 004022 159 SFPSNLHFVCPVTINFSYCVNLI-EFPQI---SGKVTRLYLGQSAIEEVPSSIECLTDL--EVLDLRGCKR--LKRISTS 230 (779)
Q Consensus 159 ~~p~~~~l~~L~~L~L~~~~~l~-~~~~~---~~~L~~L~L~~n~i~~lp~~l~~l~~L--~~L~L~~~~~--~~~lp~~ 230 (779)
.+|.. .+++|++|++++|.... .+|.. +.+|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..
T Consensus 83 ~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 83 KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc
Confidence 55555 66666666666666543 23332 3456666666666654 234445555 6666666665 4444444
Q ss_pred cCCCC-CCcEEecccccCCcccc-hhhhcCccCcEeecCCcC-------CCcCCccCCCCCCCCEEeccCCCCCCCCCCC
Q 004022 231 FCKLR-SLVTLILLGCLNLEHFP-EILEKMEHLKRIYSDRTP-------ITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301 (779)
Q Consensus 231 l~~l~-~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~n~-------i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 301 (779)
+..+. ....+++++|...+.++ ..+..+++|+.|++++|. +......++.+++|+.|++++|.+.+..+..
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 44333 12233334443333222 223445555555555554 2211123455555555555554432211100
Q ss_pred CC---CchhHHH-HHhhcccCCcCCccc-----cCccccCeeeccCCCCCCccChhhccCC---CCCcEEEecCCCCccC
Q 004022 302 IG---SLEYLYY-ILAAASAISQLPSSV-----ALSNMLRSLDSSHCKGLESFPRTFLLGL---SAMGLLHISDYAVREI 369 (779)
Q Consensus 302 l~---~l~~L~~-~~~~~~~~~~lp~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~~l---~~L~~L~Ls~~~l~~~ 369 (779)
+. ..++|+. .+.++...+.+|..+ +.+++|+.+++++|.+ .+|...+..+ .+|+.|++++|.+...
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc
Confidence 00 0011222 122222222444444 5666777777777766 2331111111 4577777777776654
Q ss_pred CcccCCCCCccEEEEecCCCcc-CChhccCCCCCCEEEcCCCCCCC--cCC---CCCCCccEEEEecCCCCCCCCC----
Q 004022 370 PQEIAYLSSLEILYLSGNNFES-LPAIIKQMSQLRFIHLEDFNMLQ--SLP---ELPLCLKYLHLIDCKMLQSLPV---- 439 (779)
Q Consensus 370 p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~~~~--~~~---~~~~~L~~L~l~~c~~l~~lp~---- 439 (779)
+. ...+++|++|++++|.++. +|..+..+++|++|++++|.+.+ .+| ..+++|++|++++|.....+|.
T Consensus 318 ~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 318 LC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred cc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 31 2566777777777777774 56667777777777777777765 333 2446777777777765443442
Q ss_pred CCCCccEEEeeCCCCCCCCCCCC-CCccEEeeecCcCCcccCC---CCCCccEEEEecCCCCCCcccc
Q 004022 440 LPFCLESLDLTGCNMLRSLPELP-LCLQYLNLEDCNMLRSLPE---LPLCLQLLTVRNCNRLQSLPEI 503 (779)
Q Consensus 440 l~~~L~~L~ls~n~~l~~l~~~~-~~L~~L~l~~c~~L~~l~~---~~~sL~~L~i~~C~~L~~lp~~ 503 (779)
...+|++|++++|.+.+.+|..+ ++|++|++++| .++.+|. .+++|+.|++++| +++.+|..
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 11367777777777766655544 57777777776 3445553 2456777777774 45566654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=307.13 Aligned_cols=363 Identities=16% Similarity=0.100 Sum_probs=190.9
Q ss_pred CceEEEccCCCCCCCC-CCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCC-CCCCCC
Q 004022 92 KLRYLHWDTYPLRTLP-SNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFP-SNLHFV 167 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp-~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p-~~~~l~ 167 (779)
+|++|++++|.++.++ ..| .+++|++|+|++|+|+. +|.. .+++|++|+|++|.+.. .+| .+.+++
T Consensus 77 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--------ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--------ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--------cCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence 5555555555555442 223 45555555555555544 3333 45555555555554332 122 233455
Q ss_pred CCcEEEecCCcCccccCCcCCCc--cEEEecCcCC--c-ccCcccCCCC--CccEEeeeCCCCCccccc-ccCCCCCCcE
Q 004022 168 CPVTINFSYCVNLIEFPQISGKV--TRLYLGQSAI--E-EVPSSIECLT--DLEVLDLRGCKRLKRIST-SFCKLRSLVT 239 (779)
Q Consensus 168 ~L~~L~L~~~~~l~~~~~~~~~L--~~L~L~~n~i--~-~lp~~l~~l~--~L~~L~L~~~~~~~~lp~-~l~~l~~L~~ 239 (779)
+|++|++++|.........+.+| +.|++++|.+ . ..|..+..+. .| .+++++|.+.+.++. .+..+++|+.
T Consensus 147 ~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp TCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred cccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEE
Confidence 55555555554433222222333 5555555544 1 2233333222 11 233344443332222 2334556666
Q ss_pred EecccccC----CcccchhhhcCccCcEeecCCcCCC-----cCCccCCCCCCCCEEeccCCCCCCCCCCCC-----CCc
Q 004022 240 LILLGCLN----LEHFPEILEKMEHLKRIYSDRTPIT-----ELPSSFENLPGLEVLFVEDCSKLDNLPDNI-----GSL 305 (779)
Q Consensus 240 L~L~~~~~----~~~~p~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l-----~~l 305 (779)
|++++|.. .......+..+++|+.|++.++.+. .++..+ ..++|++|++++|.+.+.+|..+ .++
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L 304 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETAL 304 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccc
Confidence 66665431 1122233455556555555554443 222221 12367777777776666666655 444
Q ss_pred hhHHH-HHhhcccCCcCCc-ccc---CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCc
Q 004022 306 EYLYY-ILAAASAISQLPS-SVA---LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSL 379 (779)
Q Consensus 306 ~~L~~-~~~~~~~~~~lp~-~l~---~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L 379 (779)
+.|+. ....+ .+ .+|. .+. ...+|+.|++++|.+..... ...+++|++|++++|.+++ +|..+..+++|
T Consensus 305 ~~L~~~~~~~~-~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 379 (562)
T 3a79_B 305 KSLMIEHVKNQ-VF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379 (562)
T ss_dssp CEEEEEEEEEC-CC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSC
T ss_pred hheehhhcccc-ee-ecChhhhhhhhccCcceEEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhhcccCCC
Confidence 44443 22221 11 3331 111 12568889998888754321 2578889999999998888 77788888999
Q ss_pred cEEEEecCCCccCC---hhccCCCCCCEEEcCCCCCCCcCCC----CCCCccEEEEecCCCCCCCCC-CCCCccEEEeeC
Q 004022 380 EILYLSGNNFESLP---AIIKQMSQLRFIHLEDFNMLQSLPE----LPLCLKYLHLIDCKMLQSLPV-LPFCLESLDLTG 451 (779)
Q Consensus 380 ~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~l~~c~~l~~lp~-l~~~L~~L~ls~ 451 (779)
++|++++|+++.++ ..+..+++|+.|++++|.+.+.+|. .+++|++|++++|.....+|. ++.+|++|++++
T Consensus 380 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~ 459 (562)
T 3a79_B 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHN 459 (562)
T ss_dssp CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCS
T ss_pred CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCC
Confidence 99999999888665 4578889999999998888775554 235566666666654333332 223555555555
Q ss_pred CCCCCCCCC---CCCCccEEeeec
Q 004022 452 CNMLRSLPE---LPLCLQYLNLED 472 (779)
Q Consensus 452 n~~l~~l~~---~~~~L~~L~l~~ 472 (779)
|.+. .+|. .+++|++|++++
T Consensus 460 N~l~-~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 460 NRIM-SIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp SCCC-CCCTTTTSSCCCSEEECCS
T ss_pred CcCc-ccChhhcCCCCCCEEECCC
Confidence 5444 2322 124455555544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=291.88 Aligned_cols=325 Identities=16% Similarity=0.099 Sum_probs=155.6
Q ss_pred CCCCCCCCCCceEEEccCCCCC-CCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC
Q 004022 83 PNGLDYLPKKLRYLHWDTYPLR-TLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS 159 (779)
Q Consensus 83 ~~~l~~l~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~ 159 (779)
|..+..+ ++|++|++++|.+. .++. .| .+++|++|+|++|+++.+ .|..|+++++|++|+|++|.+.+.
T Consensus 47 ~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~ 118 (455)
T 3v47_A 47 ETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-------ETGAFNGLANLEVLTLTQCNLDGA 118 (455)
T ss_dssp TTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-------CTTTTTTCTTCCEEECTTSCCBTH
T ss_pred hhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-------ChhhccCcccCCEEeCCCCCCCcc
Confidence 4444455 35666666666553 3432 23 556666666666665543 455555666666666666654432
Q ss_pred CCC---CCCCCCCcEEEecCCcCccccCC----cCCCccEEEecCcCCcccC-cccCCC--CCccEEeeeCCCCCccccc
Q 004022 160 FPS---NLHFVCPVTINFSYCVNLIEFPQ----ISGKVTRLYLGQSAIEEVP-SSIECL--TDLEVLDLRGCKRLKRIST 229 (779)
Q Consensus 160 ~p~---~~~l~~L~~L~L~~~~~l~~~~~----~~~~L~~L~L~~n~i~~lp-~~l~~l--~~L~~L~L~~~~~~~~lp~ 229 (779)
.+. +..+++|++|++++|......|. .+.+|+.|++++|.+..++ ..+..+ .+|+.|++++|.+....+.
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~ 198 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT
T ss_pred ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchh
Confidence 221 44455666666666554443332 2345555666665554432 233333 4556666665554432221
Q ss_pred c--------cCCCCCCcEEecccccCCcccchhhhcC---ccCcEeecCCcCCCcCCc-----------cCC--CCCCCC
Q 004022 230 S--------FCKLRSLVTLILLGCLNLEHFPEILEKM---EHLKRIYSDRTPITELPS-----------SFE--NLPGLE 285 (779)
Q Consensus 230 ~--------l~~l~~L~~L~L~~~~~~~~~p~~l~~l---~~L~~L~L~~n~i~~lp~-----------~l~--~l~~L~ 285 (779)
. +..+++|++|++++|.+.+..|..+... ++|+.|++++|....... .+. ..++|+
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 1 2234556666666665555555544433 555666665554331110 011 124566
Q ss_pred EEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCC
Q 004022 286 VLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY 364 (779)
Q Consensus 286 ~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~ 364 (779)
.|++++|.+.+..|..+..+++|+. .+.++......|..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|
T Consensus 279 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM-FENLDKLEVLDLSYN 357 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-GTTCTTCCEEECCSS
T ss_pred EEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH-hcCcccCCEEECCCC
Confidence 6666665554444433332222222 11111111112233444455555555555554333222 345555555555555
Q ss_pred CCccC-CcccCCCCCccEEEEecCCCccCCh-hccCCCCCCEEEcCCCCCCCcC
Q 004022 365 AVREI-PQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSL 416 (779)
Q Consensus 365 ~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~~~~~ 416 (779)
.++.+ |..+..+++|++|+|++|+++.+|. .+..+++|+.|++++|++....
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 55552 4445555555555555555555443 2345555555555555544433
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=302.32 Aligned_cols=376 Identities=15% Similarity=0.105 Sum_probs=203.5
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeec-CCCCCCCCCCceEEEccCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
||++++....+.+.+|.++++|++|++++|.++ .+ |+.+..+ ++|++|++++|.++.+|
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------~~~~~~~~~l-~~L~~L~Ls~N~l~~lp 116 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-------------------SLDFHVFLFN-QDLEYLDVSHNRLQNIS 116 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-------------------EECTTTTTTC-TTCCEEECTTSCCCEEC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCC-------------------cCCHHHhCCC-CCCCEEECCCCcCCccC
Confidence 344444444555555666666666666666553 34 5667777 59999999999999999
Q ss_pred CCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC--cEEEecCCcC--cccc
Q 004022 108 SNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP--VTINFSYCVN--LIEF 183 (779)
Q Consensus 108 ~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L--~~L~L~~~~~--l~~~ 183 (779)
.. .+++|++|+|++|+++.+. +|..|+++++|++|++++|.+.. ..+..+++| +.|++++|.. ....
T Consensus 117 ~~-~l~~L~~L~Ls~N~l~~l~------~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 117 CC-PMASLRHLDLSFNDFDVLP------VCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp SC-CCTTCSEEECCSSCCSBCC------CCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred cc-ccccCCEEECCCCCccccC------chHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccC
Confidence 88 9999999999999998731 45789999999999999998654 244556666 9999999987 4444
Q ss_pred CCcCC-----------------------------CccEEEecCcCC-----cccCcccCCCC------------------
Q 004022 184 PQISG-----------------------------KVTRLYLGQSAI-----EEVPSSIECLT------------------ 211 (779)
Q Consensus 184 ~~~~~-----------------------------~L~~L~L~~n~i-----~~lp~~l~~l~------------------ 211 (779)
|..+. +|+.|++++|.. ......+..++
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 44433 334444444420 00111112222
Q ss_pred ---------CccEEeeeCCCCCccccccc-----CCCCCCcEEecccccCCcccc-hhhhc---CccCcEeecCCcCCCc
Q 004022 212 ---------DLEVLDLRGCKRLKRISTSF-----CKLRSLVTLILLGCLNLEHFP-EILEK---MEHLKRIYSDRTPITE 273 (779)
Q Consensus 212 ---------~L~~L~L~~~~~~~~lp~~l-----~~l~~L~~L~L~~~~~~~~~p-~~l~~---l~~L~~L~L~~n~i~~ 273 (779)
+|++|++++|.+.+.+|..+ ..++.|+.+++..+.. .+| +.+.. ..+|++|++++|.+..
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc
Confidence 44444444444444444433 3333333333333322 222 11111 1346666666666554
Q ss_pred CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcC---CccccCccccCeeeccCCCCCCccChhhc
Q 004022 274 LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQL---PSSVALSNMLRSLDSSHCKGLESFPRTFL 350 (779)
Q Consensus 274 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~l---p~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 350 (779)
++. ...+++|+.|++++|.+.+..|..+..+++|+.+....+.+..+ |..+..+++|+.|++++|.+.+..+...+
T Consensus 346 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 346 MVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred ccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 331 24566777777777766665555555544444422222222222 22344444555555555544443333333
Q ss_pred cCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEe
Q 004022 351 LGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLI 429 (779)
Q Consensus 351 ~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~ 429 (779)
..+++|+.|++++|.+++ +|..+. ++|++|++++|+++.+|..+..+++|+.|++++|.+.+ +|..
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~---------- 491 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDG---------- 491 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTT----------
T ss_pred cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHH----------
Confidence 444455555555554433 222221 34555555555555454444444555554444444331 2211
Q ss_pred cCCCCCCCCCCCCCccEEEeeCCCCCC
Q 004022 430 DCKMLQSLPVLPFCLESLDLTGCNMLR 456 (779)
Q Consensus 430 ~c~~l~~lp~l~~~L~~L~ls~n~~l~ 456 (779)
.+..++ +|++|++++|++..
T Consensus 492 ------~~~~l~-~L~~L~l~~N~~~c 511 (562)
T 3a79_B 492 ------VFDRLT-SLQYIWLHDNPWDC 511 (562)
T ss_dssp ------STTTCT-TCCCEECCSCCBCC
T ss_pred ------HHhcCC-CCCEEEecCCCcCC
Confidence 011122 77888888887654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=288.41 Aligned_cols=297 Identities=15% Similarity=0.175 Sum_probs=184.4
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
+|++|++++|.++.++....+++|++|++++|.++.+ +. +.++++|++|++++|. ...++.+.++++|+.
T Consensus 91 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--------~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 91 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--------DP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--------GG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred cCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--------hH-HcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 5566666665555555422555566666655555542 22 4555556666665555 233444555555555
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
|+++++.........+.+|+.|++++|.+..++ .+..+++|++|++++|.+.+..| ++.+++|++|++++|.+.+.
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence 555422111111122344555555555555443 24455555555555555443333 44455555555555544331
Q ss_pred chhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCcccc
Q 004022 252 PEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNML 331 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L 331 (779)
..+..+++|++|++++|.++.++. +..+++|+.|++++|.+ ..++. +..+++|
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l------------------------~~~~~-~~~l~~L 289 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI------------------------SNISP-LAGLTAL 289 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC------------------------CCCGG-GTTCTTC
T ss_pred -hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCcc------------------------Ccccc-ccCCCcc
Confidence 234455555555555555555443 45555555555555443 33333 6678899
Q ss_pred CeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCC
Q 004022 332 RSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 332 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 411 (779)
+.|++++|.+.+..+ +..+++|+.|++++|.+++++. +..+++|++|++++|.++.++ .+..+++|+.|++++|+
T Consensus 290 ~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 290 TNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCc
Confidence 999999999887655 5688999999999999988655 778899999999999999875 68899999999999999
Q ss_pred CCCcCCC-CCCCccEEEEecCCCC
Q 004022 412 MLQSLPE-LPLCLKYLHLIDCKML 434 (779)
Q Consensus 412 ~~~~~~~-~~~~L~~L~l~~c~~l 434 (779)
+.+..|- .+++|+.|++++|+..
T Consensus 365 l~~~~~~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 365 ISDLTPLANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCBCGGGTTCTTCCEEECCCEEEE
T ss_pred cCccchhhcCCCCCEEeccCCccc
Confidence 8877662 4588999999998643
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=288.95 Aligned_cols=310 Identities=15% Similarity=0.101 Sum_probs=224.3
Q ss_pred ChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEE
Q 004022 40 DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELN 119 (779)
Q Consensus 40 ~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~ 119 (779)
.+..++++++|++|++++|.++ .+| ++..+ ++|++|++++|.++.+| ...+++|++|+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~ 91 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSIT-------------------DMT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLA 91 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCC-------------------CCT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEE
T ss_pred cccChhHcCCCCEEEccCCCcc-------------------cCh-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEE
Confidence 3446889999999999999885 334 46666 48999999999988886 33788899999
Q ss_pred CCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCc-
Q 004022 120 LRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQS- 198 (779)
Q Consensus 120 L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n- 198 (779)
+++|.++. ++ ++++++|++|++++|.+. .+| +..+++|++|++++|.....-.....+|+.|++++|
T Consensus 92 Ls~N~l~~--------~~--~~~l~~L~~L~L~~N~l~-~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 92 CDSNKLTN--------LD--VTPLTKLTYLNCDTNKLT-KLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK 159 (457)
T ss_dssp CCSSCCSC--------CC--CTTCTTCCEEECCSSCCS-CCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCS
T ss_pred CcCCCCce--------ee--cCCCCcCCEEECCCCcCC-eec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCC
Confidence 99998886 33 678889999999998754 455 777889999999988766533345567888888888
Q ss_pred CCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccC
Q 004022 199 AIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSF 278 (779)
Q Consensus 199 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l 278 (779)
.++.+ .++.+++|++|++++|.+.+ +| +..+++|+.|++++|.+.+. .++.+++|++|++++|.++.+| +
T Consensus 160 ~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~ 229 (457)
T 3bz5_A 160 KITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--V 229 (457)
T ss_dssp CCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--C
T ss_pred ccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--c
Confidence 45555 47788889999999887655 44 77788899999988877664 3778888999999999988887 7
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcE
Q 004022 279 ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGL 358 (779)
Q Consensus 279 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 358 (779)
+.+++|+.|++++|++.+..+..+.+++.|. ....+|+.|++++|...+.++ ...+++|+.
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~----------------l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~ 290 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELDVSTLSKLTTLH----------------CIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKE 290 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCCCTTCTTCCEEE----------------CTTCCCSCCCCTTCTTCCEEE---CTTCTTCCC
T ss_pred cccCCCCEEEeeCCcCCCcCHHHCCCCCEEe----------------ccCCCCCEEECCCCccCCccc---ccccccCCE
Confidence 8888999999998887765433333332111 011345666666666555544 235666666
Q ss_pred EEecCCCCcc-CCc--------ccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCC
Q 004022 359 LHISDYAVRE-IPQ--------EIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 359 L~Ls~~~l~~-~p~--------~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
|++++|...+ +|. .+..+++|++|++++|+++.++ ++.+++|+.|++++|++.+
T Consensus 291 L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB
T ss_pred EECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCC
Confidence 6666665332 221 1445577888888888887764 7777888887777777654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=285.17 Aligned_cols=341 Identities=17% Similarity=0.229 Sum_probs=279.9
Q ss_pred hcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCC
Q 004022 45 TNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSK 124 (779)
Q Consensus 45 ~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~ 124 (779)
..+++|+.|+++++.++ .+| ++..+ ++|++|++++|.++.+|....+++|++|++++|.
T Consensus 43 ~~l~~l~~L~l~~~~i~-------------------~l~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~ 101 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-------------------SID-GVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 101 (466)
T ss_dssp HHHHTCCEEECCSSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred hHhccccEEecCCCCCc-------------------cCc-chhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCc
Confidence 45778999999999874 344 35566 5999999999999999883399999999999999
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC--CcCCCccEEEecCcCCcc
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP--QISGKVTRLYLGQSAIEE 202 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~--~~~~~L~~L~L~~n~i~~ 202 (779)
++. ++. ++++++|++|++++|. .+.++.+.++++|++|++++|.... ++ ..+.+|+.|+++ +.+..
T Consensus 102 l~~--------~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 102 IAD--------ITP-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp CCC--------CGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE-ESCCC
T ss_pred ccc--------Chh-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC-CcccC
Confidence 987 344 8899999999999998 4556668889999999999997543 33 345688999996 45555
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLP 282 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~ 282 (779)
++. ++++++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..| ++.+++|++|++++|.++.++ .+..++
T Consensus 170 ~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~ 243 (466)
T 1o6v_A 170 LKP-LANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLT 243 (466)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCT
T ss_pred chh-hccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCC
Confidence 543 8889999999999988554 33 37889999999999988776655 778999999999999999875 478899
Q ss_pred CCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEec
Q 004022 283 GLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHIS 362 (779)
Q Consensus 283 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls 362 (779)
+|+.|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~------------------------~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 244 NLTDLDLANNQISNL------------------------AP-LSGLTKLTELKLGANQISNISP---LAGLTALTNLELN 295 (466)
T ss_dssp TCSEEECCSSCCCCC------------------------GG-GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECC
T ss_pred CCCEEECCCCccccc------------------------hh-hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcC
Confidence 999999999875432 11 5678899999999999887655 5689999999999
Q ss_pred CCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCC--CCCCccEEEEecCCCCCCCC--
Q 004022 363 DYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE--LPLCLKYLHLIDCKMLQSLP-- 438 (779)
Q Consensus 363 ~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~--~~~~L~~L~l~~c~~l~~lp-- 438 (779)
+|.+.+++. +..+++|+.|++++|+++.++. +..+++|+.|++++|++.+. +. .+++|+.|++++|+.....|
T Consensus 296 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~ 372 (466)
T 1o6v_A 296 ENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPLA 372 (466)
T ss_dssp SSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGGGT
T ss_pred CCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccchhh
Confidence 999999765 7889999999999999998776 88999999999999988764 33 45899999999997654444
Q ss_pred CCCCCccEEEeeCCCCCC
Q 004022 439 VLPFCLESLDLTGCNMLR 456 (779)
Q Consensus 439 ~l~~~L~~L~ls~n~~l~ 456 (779)
.++ +|++|++++|++.+
T Consensus 373 ~l~-~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 373 NLT-RITQLGLNDQAWTN 389 (466)
T ss_dssp TCT-TCCEEECCCEEEEC
T ss_pred cCC-CCCEEeccCCcccC
Confidence 233 89999999998765
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=298.74 Aligned_cols=432 Identities=17% Similarity=0.133 Sum_probs=266.9
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCC-CCCCCCCCceEEEccCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPN-GLDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~n~l~~l 106 (779)
.||++++....+++.+|.++++||+|+|++|.|+ .++. .+..+ ++|++|+|++|+++.+
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-------------------~i~~~~f~~L-~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------------------TIEDGAYQSL-SHLSTLILTGNPIQSL 115 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-------------------EECTTTTTTC-TTCCEEECTTCCCCEE
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-------------------CcChhHhcCC-CCCCEEEccCCcCCCC
Confidence 4677777777788888888888888888888874 4544 45566 5899999999999988
Q ss_pred CCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC-CCCC-CCCCCCCcEEEecCCcCccc
Q 004022 107 PSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPS-NLHFVCPVTINFSYCVNLIE 182 (779)
Q Consensus 107 p~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~-~~p~-~~~l~~L~~L~L~~~~~l~~ 182 (779)
|.. | ++++|++|+|++|+++.+ .+..|+++++|++|+|++|.+.. ..|. +..+++|++|++++|.....
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l-------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCS-------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CHHHhcCCCCCCEEECCCCcCCCC-------ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 864 5 789999999999998875 44568889999999999988654 3455 44588999999998876655
Q ss_pred cCCcCC-------CccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcc-cccccCC---------------------
Q 004022 183 FPQISG-------KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKR-ISTSFCK--------------------- 233 (779)
Q Consensus 183 ~~~~~~-------~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~-lp~~l~~--------------------- 233 (779)
.+..+. ....++++.|.+..++........++.+++.++..... .+..+..
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 444432 23467788888877776655555566666665532211 1111111
Q ss_pred ------------------------------------CCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc
Q 004022 234 ------------------------------------LRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS 277 (779)
Q Consensus 234 ------------------------------------l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~ 277 (779)
+.+++.+.+.++.... ...+.....|+.|++.++.+..++.
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~- 345 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPT- 345 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCC-
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCc-
Confidence 2223333333322211 1124445677888888877766554
Q ss_pred CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhccc--CCcCCccccCccccCeeeccCCCCCCccChhhccCCC
Q 004022 278 FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASA--ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLS 354 (779)
Q Consensus 278 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~--~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 354 (779)
..++.|+.+++..+..... .....+++|+. .+..+.. ....+.....+.+|+.+++..+........ +..++
T Consensus 346 -~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~--~~~l~ 420 (635)
T 4g8a_A 346 -LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN--FLGLE 420 (635)
T ss_dssp -CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC--CTTCT
T ss_pred -ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc--ccccc
Confidence 2355666666666544322 12234444444 2222211 122344455666777777777665443332 34667
Q ss_pred CCcEEEecCCCCccC--CcccCCCCCccEEEEecCCCccC-ChhccCCCCCCEEEcCCCCCCCc-CCC---CCCCccEEE
Q 004022 355 AMGLLHISDYAVREI--PQEIAYLSSLEILYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQS-LPE---LPLCLKYLH 427 (779)
Q Consensus 355 ~L~~L~Ls~~~l~~~--p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~-~~~---~~~~L~~L~ 427 (779)
+|+.++++.++.... +..+..+++++.++++.|.+..+ +..+..+++|+.|++++|..... .|. .+++|++|+
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 777777777665552 23456667777777777777643 35566677777777777765443 333 235677777
Q ss_pred EecCCCCCCCC----CCCCCccEEEeeCCCCCCCCCC---CCCCccEEeeecCcCCcccCC----CCCCccEEEEecCC
Q 004022 428 LIDCKMLQSLP----VLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNLEDCNMLRSLPE----LPLCLQLLTVRNCN 495 (779)
Q Consensus 428 l~~c~~l~~lp----~l~~~L~~L~ls~n~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~----~~~sL~~L~i~~C~ 495 (779)
+++|+.....| .++ +|++|++++|++.+..+. .+++|++|++++|.-....|+ .+++|+.|++++++
T Consensus 501 Ls~N~L~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTSCCCEECTTTTTTCT-TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCccCCcChHHHcCCC-CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 77775332222 233 677777777777665554 236777888877654433333 23578888887754
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=286.42 Aligned_cols=351 Identities=15% Similarity=0.111 Sum_probs=253.9
Q ss_pred CCCCceEEEccCCCCCCC-CCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCC
Q 004022 89 LPKKLRYLHWDTYPLRTL-PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLH 165 (779)
Q Consensus 89 l~~~L~~L~l~~n~l~~l-p~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~ 165 (779)
++++|++|++++|.++.+ |..+ .+++|++|+|++|.+... . .+..|.++++|++|+|++|.+....|. +.+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~---i---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 101 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV---I---RNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE---E---CTTTTTTCTTCCEEECTTCTTCEECTTTTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce---E---CcccccccccCCEEeCCCCccCccChhhccC
Confidence 446888999998888877 4455 888899999988887531 0 355688888899999988886665554 566
Q ss_pred CCCCcEEEecCCcCccccC-----CcCCCccEEEecCcCCccc-Ccc-cCCCCCccEEeeeCCCCCcccccccCCC--CC
Q 004022 166 FVCPVTINFSYCVNLIEFP-----QISGKVTRLYLGQSAIEEV-PSS-IECLTDLEVLDLRGCKRLKRISTSFCKL--RS 236 (779)
Q Consensus 166 l~~L~~L~L~~~~~l~~~~-----~~~~~L~~L~L~~n~i~~l-p~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l--~~ 236 (779)
+++|++|++++|......+ ..+.+|+.|++++|.+..+ |.. ++++++|++|++++|.+.+..+..+..+ .+
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 8888888888887764332 2345778888888888766 333 6778888888888887777666666555 57
Q ss_pred CcEEecccccCCcccchh--------hhcCccCcEeecCCcCCCc-CCccCC---CCCCCCEEeccCCCCCCCCCCCCCC
Q 004022 237 LVTLILLGCLNLEHFPEI--------LEKMEHLKRIYSDRTPITE-LPSSFE---NLPGLEVLFVEDCSKLDNLPDNIGS 304 (779)
Q Consensus 237 L~~L~L~~~~~~~~~p~~--------l~~l~~L~~L~L~~n~i~~-lp~~l~---~l~~L~~L~L~~~~~~~~lp~~l~~ 304 (779)
|+.|++++|......+.. +..+++|++|++++|.++. .|..+. ..++|+.|++++|...+.... ...
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~ 260 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTN 260 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhh
Confidence 778888877765543322 2345678888888887763 333332 237788888877765443211 000
Q ss_pred chhHHHHHhhcccCCcCCcccc--CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC-CcccCCCCCccE
Q 004022 305 LEYLYYILAAASAISQLPSSVA--LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEI 381 (779)
Q Consensus 305 l~~L~~~~~~~~~~~~lp~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~-p~~l~~l~~L~~ 381 (779)
+ ....+..+. ..++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.++ |..+..+++|++
T Consensus 261 ~------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 261 F------------KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp S------------CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred h------------ccCcccccccccccCceEEEecCccccccchhh-cccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 0 000111122 2468999999999998776654 67899999999999999984 668899999999
Q ss_pred EEEecCCCccC-ChhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCCCCCCCC-C---CCCccEEEeeCCC
Q 004022 382 LYLSGNNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPV-L---PFCLESLDLTGCN 453 (779)
Q Consensus 382 L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~l~~lp~-l---~~~L~~L~ls~n~ 453 (779)
|+|++|.++.+ |..+..+++|+.|++++|.+.+..|.. +++|++|++++|... .+|. . ..+|++|++++|+
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCC
Confidence 99999999976 567899999999999999998877754 478999999998654 4442 1 1389999999999
Q ss_pred CCCCCCC
Q 004022 454 MLRSLPE 460 (779)
Q Consensus 454 ~l~~l~~ 460 (779)
+....|.
T Consensus 407 l~~~~~~ 413 (455)
T 3v47_A 407 WDCSCPR 413 (455)
T ss_dssp BCCCTTT
T ss_pred cccCCCc
Confidence 9876653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=268.14 Aligned_cols=304 Identities=19% Similarity=0.231 Sum_probs=223.6
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRC 122 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~ 122 (779)
.+..+++|+.|+++++.++ .++ ++..+ ++|++|++++|.++.+|....+++|++|++++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-------------------~~~-~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~ 97 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-------------------SIQ-GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGT 97 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred cchhcccccEEEEeCCccc-------------------cch-hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccC
Confidence 4678999999999999884 343 35666 59999999999999998844899999999999
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCC--cCCCccEEEecCcCC
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQ--ISGKVTRLYLGQSAI 200 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~--~~~~L~~L~L~~n~i 200 (779)
|.++. + +++..+++|++|++++|.+ ..++.+..+++|+.|++++|.....++. ...+|+.|++++|.+
T Consensus 98 n~i~~--------~-~~~~~l~~L~~L~l~~n~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 98 NKITD--------I-SALQNLTNLRELYLNEDNI-SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp SCCCC--------C-GGGTTCTTCSEEECTTSCC-CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CcccC--------c-hHHcCCCcCCEEECcCCcc-cCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc
Confidence 99986 3 3588999999999999984 5566688899999999999977655443 345677778877777
Q ss_pred cccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCC
Q 004022 201 EEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFEN 280 (779)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~ 280 (779)
..++. +..+++|++|++++|.+... +. +..+++|+.|++++|...+..+ +..+++|++|++++|.++.++. +..
T Consensus 168 ~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~ 241 (347)
T 4fmz_A 168 KDVTP-IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LAN 241 (347)
T ss_dssp CCCGG-GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred CCchh-hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhc
Confidence 76665 66777788888877765443 33 6667777888877776655433 6677777788887777777766 777
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
+++|+.|++++|.+... ..+..+++|+.|++++|.+... + .+..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~ 293 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI-------------------------NAVKDLTKLKMLNVGSNQISDI-S--VLNNLSQLNSLF 293 (347)
T ss_dssp CTTCCEEECCSSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEE
T ss_pred CCCCCEEECCCCccCCC-------------------------hhHhcCCCcCEEEccCCccCCC-h--hhcCCCCCCEEE
Confidence 77777777777654321 1245567777777777776654 2 245677777777
Q ss_pred ecCCCCcc-CCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCC
Q 004022 361 ISDYAVRE-IPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNM 412 (779)
Q Consensus 361 Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~ 412 (779)
+++|.+.+ .+..+..+++|++|++++|.++.++. +..+++|+.|++++|++
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 77777766 34556777777777777777776665 67777777777777765
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=277.89 Aligned_cols=298 Identities=21% Similarity=0.239 Sum_probs=210.7
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+|.++ +.+|++|++++|.++.++. .| .+++|++|+|++|.++.+ .|.+|.++++|++|+|++|.+.
T Consensus 25 ~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~- 93 (477)
T 2id5_A 25 AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-------EPGAFNNLFNLRTLGLRSNRLK- 93 (477)
T ss_dssp SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCC-
T ss_pred cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-------ChhhhhCCccCCEEECCCCcCC-
Confidence 556543 4688999999999888854 45 888999999999988875 5778888899999999888744
Q ss_pred CCCC--CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCC
Q 004022 159 SFPS--NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRS 236 (779)
Q Consensus 159 ~~p~--~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 236 (779)
.+|. +.++++|++|++++|... ...+..+..+++|++|++++|.+....+..+.++++
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~--------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIV--------------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCC--------------------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred ccCcccccCCCCCCEEECCCCccc--------------------cCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 4443 456888888888887654 333556777888888888888777766777788888
Q ss_pred CcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhc
Q 004022 237 LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAA 315 (779)
Q Consensus 237 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~ 315 (779)
|++|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+..+.+|...
T Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------- 220 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC------------- 220 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT-------------
T ss_pred CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc-------------
Confidence 8888888887776666678888888888888888887655 47788888888888877666554422
Q ss_pred ccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cccCCCCCccEEEEecCCCccC-C
Q 004022 316 SAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESL-P 393 (779)
Q Consensus 316 ~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~l-p 393 (779)
....+|+.|++++|.+.. .+...+..+++|+.|++++|.++.++ ..+..+++|++|+|++|+++.+ |
T Consensus 221 ----------~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 221 ----------LYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp ----------TTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred ----------ccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence 223367777777776654 33333566677777777777776643 3466677777777777777644 4
Q ss_pred hhccCCCCCCEEEcCCCCCCCcCCCC---CCCccEEEEecCCC
Q 004022 394 AIIKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKM 433 (779)
Q Consensus 394 ~~l~~l~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~l~~c~~ 433 (779)
..+..+++|+.|++++|.+.+..+.. .++|++|++++|+.
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 56667777777777777665544332 35677777776653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=266.79 Aligned_cols=286 Identities=15% Similarity=0.151 Sum_probs=207.8
Q ss_pred cccCCceEeeccCcccccccCCCCccccccccceeecCCCC-CCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCC
Q 004022 46 NMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGL-DYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRC 122 (779)
Q Consensus 46 ~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l-~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~ 122 (779)
.+++||.|++++|.++ .+|..+ ..+ ++|++|++++|.++.++. .+ .+++|++|+|++
T Consensus 43 ~l~~l~~l~l~~~~l~-------------------~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 102 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-------------------KLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102 (390)
T ss_dssp GGCCCSEEEEESCEES-------------------EECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccCCceEEEecCCchh-------------------hCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCC
Confidence 4678888888888773 566553 345 588888888888888765 45 788888888888
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCC
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAI 200 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i 200 (779)
|.++.+ .|..|+++++|++|+|++|.+. .+|. +.++++|++|++++|...
T Consensus 103 n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-------------------- 154 (390)
T 3o6n_A 103 NAIRYL-------PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-------------------- 154 (390)
T ss_dssp SCCCCC-------CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CCCCcC-------CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC--------------------
Confidence 888775 5566788888888888888744 4544 356777777777777653
Q ss_pred cccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCC
Q 004022 201 EEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFEN 280 (779)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~ 280 (779)
...+..++.+++|++|++++|.+... .+..+++|+.|++++|.... +...++|++|++++|.++.+|...
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~-- 224 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV-- 224 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--
T ss_pred ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccccc--
Confidence 22234567777888888887775543 24557778888887775543 233457888888888888776533
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
.++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+.. +..+++|+.|+
T Consensus 225 ~~~L~~L~l~~n~l~~~-------------------------~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~ 278 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT-------------------------AWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLY 278 (390)
T ss_dssp CSSCCEEECCSSCCCCC-------------------------GGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEE
T ss_pred cccccEEECCCCCCccc-------------------------HHHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEE
Confidence 47788888888765431 23556778888888888877665544 56788888888
Q ss_pred ecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCc
Q 004022 361 ISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQS 415 (779)
Q Consensus 361 Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~ 415 (779)
+++|.++.+|..+..+++|++|++++|.++.+|..+..+++|+.|++++|++...
T Consensus 279 L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee
Confidence 8888888887777788888888888888888887788888888888888876543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=269.94 Aligned_cols=337 Identities=15% Similarity=0.114 Sum_probs=257.9
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
||++++....++ +|..+++|++|++++|.++ .+| +..+ ++|++|++++|.++.+|
T Consensus 47 L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~-------------------~~~--~~~l-~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 47 LDCHNSSITDMT--GIEKLTGLTKLICTSNNIT-------------------TLD--LSQN-TNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp EECCSSCCCCCT--TGGGCTTCSEEECCSSCCS-------------------CCC--CTTC-TTCSEEECCSSCCSCCC-
T ss_pred EEccCCCcccCh--hhcccCCCCEEEccCCcCC-------------------eEc--cccC-CCCCEEECcCCCCceee-
Confidence 555665554553 6999999999999999985 233 5566 59999999999999986
Q ss_pred CCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC-CcC
Q 004022 109 NFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP-QIS 187 (779)
Q Consensus 109 ~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~-~~~ 187 (779)
...+++|++|++++|+++. +| ++.+++|++|++++|.+.. ++ +..+++|++|++++|...+.++ ..+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~--------l~--~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~~~~l 169 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK--------LD--VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLDVTPQ 169 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC--------CC--CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCCCTTC
T ss_pred cCCCCcCCEEECCCCcCCe--------ec--CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCcccccccccC
Confidence 3389999999999999987 33 7799999999999998554 43 7789999999999997666553 345
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
.+|+.|++++|.++.+| ++.+++|+.|++++|.+.+. .+..+++|++|++++|.+.+ +| ++.+++|+.|+++
T Consensus 170 ~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 170 TQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp TTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred CcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 78999999999999988 88999999999999987664 38889999999999998877 56 8899999999999
Q ss_pred CcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccCh
Q 004022 268 RTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPR 347 (779)
Q Consensus 268 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~ 347 (779)
+|.++.+| ++.+++|+.|+++.+++... .+.+|...+.+| ++.+++|+.|++++|...+.++.
T Consensus 242 ~N~l~~~~--~~~l~~L~~L~l~~n~L~~L-------------~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 242 VNPLTELD--VSTLSKLTTLHCIQTDLLEI-------------DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTCCCSCC-------------CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCcCCCcC--HHHCCCCCEEeccCCCCCEE-------------ECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 99999887 56778888888777543221 122333344444 35678888888888876554332
Q ss_pred -------hhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCCC
Q 004022 348 -------TFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELP 420 (779)
Q Consensus 348 -------~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 420 (779)
..+...++|+.|++++|.++.++ ++.+++|+.|++++|+++.++ .|..|++++|.+.+. ..+
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~-------~L~~L~l~~n~l~g~--~~~ 373 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-------SVGKIPALNNNFEAE--GQT 373 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT-------TGGGSSGGGTSEEEE--EEE
T ss_pred CCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc-------ccccccccCCcEEec--cee
Confidence 12456789999999999999974 889999999999999988653 445555666555443 112
Q ss_pred CCccEEEEecCCCCCCCC
Q 004022 421 LCLKYLHLIDCKMLQSLP 438 (779)
Q Consensus 421 ~~L~~L~l~~c~~l~~lp 438 (779)
..|+.+++++|..-..+|
T Consensus 374 ~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 374 ITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp EECCCBCCBTTBEEEECC
T ss_pred eecCccccccCcEEEEcC
Confidence 234445555554444444
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=258.27 Aligned_cols=301 Identities=16% Similarity=0.158 Sum_probs=249.3
Q ss_pred cEEEEEeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCC
Q 004022 23 AIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYP 102 (779)
Q Consensus 23 ~i~~i~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~ 102 (779)
.++.+.+. ++....++ +|..+++|++|++++|.++ .++. +..+ ++|++|++++|.
T Consensus 45 ~L~~L~l~--~~~i~~~~--~~~~~~~L~~L~l~~n~i~-------------------~~~~-~~~l-~~L~~L~L~~n~ 99 (347)
T 4fmz_A 45 SITKLVVA--GEKVASIQ--GIEYLTNLEYLNLNGNQIT-------------------DISP-LSNL-VKLTNLYIGTNK 99 (347)
T ss_dssp TCSEEECC--SSCCCCCT--TGGGCTTCCEEECCSSCCC-------------------CCGG-GTTC-TTCCEEECCSSC
T ss_pred cccEEEEe--CCccccch--hhhhcCCccEEEccCCccc-------------------cchh-hhcC-CcCCEEEccCCc
Confidence 45555444 44444444 4899999999999999885 2333 5566 599999999999
Q ss_pred CCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccc
Q 004022 103 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIE 182 (779)
Q Consensus 103 l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~ 182 (779)
++.+|....+++|++|++++|.++. ++. +..+++|++|++++|.....++.+..+++|++|++++|.....
T Consensus 100 i~~~~~~~~l~~L~~L~l~~n~i~~--------~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (347)
T 4fmz_A 100 ITDISALQNLTNLRELYLNEDNISD--------ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170 (347)
T ss_dssp CCCCGGGTTCTTCSEEECTTSCCCC--------CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred ccCchHHcCCCcCCEEECcCCcccC--------chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc
Confidence 9999865599999999999999987 344 7899999999999998888888888999999999999986543
Q ss_pred c-CCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccC
Q 004022 183 F-PQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHL 261 (779)
Q Consensus 183 ~-~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L 261 (779)
. ...+.+|+.|++++|.+..++. +..+++|+.|++++|.+....+ +..+++|++|++++|.+....+ +..+++|
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 171 TPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp GGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 3 2456789999999999998887 8889999999999998765544 7889999999999998766544 8899999
Q ss_pred cEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCC
Q 004022 262 KRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKG 341 (779)
Q Consensus 262 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~ 341 (779)
++|++++|.++.++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 246 ~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 246 TWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI-------------------------SVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp CEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC-------------------------GGGGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC-------------------------hhhcCCCCCCEEECcCCcC
Confidence 99999999999884 588999999999999865431 2356789999999999998
Q ss_pred CCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc
Q 004022 342 LESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 342 ~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
.+..+.. +..+++|+.|++++|.+++++. +..+++|++|++++|.++
T Consensus 300 ~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 300 GNEDMEV-IGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGGGHHH-HHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCcChhH-hhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 7765544 6789999999999999999766 888999999999999875
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=274.22 Aligned_cols=309 Identities=18% Similarity=0.171 Sum_probs=259.6
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcE
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVT 171 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~ 171 (779)
-+.++.+++.++.+|..+ +++|++|+|++|+|+.+ .|..|.++++|++|+|++|.+....|. +.++++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 84 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTL-------NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEE-------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceE-------CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCE
Confidence 467888999999999876 36899999999999985 567889999999999999986655454 566788888
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
|++++|.. ..+|. .+.++++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 85 L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 85 LGLRSNRL---------------------KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp EECCSSCC---------------------CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred EECCCCcC---------------------CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 88877754 55665 578899999999999999888888899999999999999999888
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCcc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 329 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~ 329 (779)
.+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+ ..+..++
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-----------------------~~~~~l~ 200 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-----------------------YSFKRLY 200 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-----------------------TCSCSCT
T ss_pred ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-----------------------hhcccCc
Confidence 888999999999999999999998865 8999999999999987654332 3456778
Q ss_pred ccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCc-ccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEc
Q 004022 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHL 407 (779)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L 407 (779)
+|+.|++++|...+..+...+ ...+|+.|++++|.++.+|. .+..+++|+.|+|++|.++.++ ..+..+++|+.|++
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred ccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEEC
Confidence 999999999998877766543 34599999999999999884 6899999999999999999776 56899999999999
Q ss_pred CCCCCCCcCCCC---CCCccEEEEecCCCCCCCCC--C--CCCccEEEeeCCCCC
Q 004022 408 EDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPV--L--PFCLESLDLTGCNML 455 (779)
Q Consensus 408 s~n~~~~~~~~~---~~~L~~L~l~~c~~l~~lp~--l--~~~L~~L~ls~n~~l 455 (779)
++|.+.+..|.. .++|++|++++|.. ..++. + ..+|++|++++|++.
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSSCCSEECTTTBTTCTTCCEEECCSSCC-SCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCccceECHHHhcCcccCCEEECCCCcC-ceeCHhHcCCCcccCEEEccCCCcc
Confidence 999998877764 47899999999954 44442 1 128999999999875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=276.89 Aligned_cols=303 Identities=16% Similarity=0.144 Sum_probs=208.9
Q ss_pred cccCCceEeeccCcccccccCCCCccccccccceeecCCCC-CCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCC
Q 004022 46 NMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGL-DYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRC 122 (779)
Q Consensus 46 ~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l-~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~ 122 (779)
.+.+++.|++++|.++ .+|..+ ..+ ++|++|++++|.++.++. .| .+++|++|+|++
T Consensus 49 ~l~~l~~l~l~~~~l~-------------------~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 108 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-------------------KLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108 (597)
T ss_dssp GGCCCSEEEESSCEES-------------------EECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCceEEEeeCCCCC-------------------CcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC
Confidence 3566777777777663 455543 334 477777777777776664 34 677777777777
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCC
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAI 200 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i 200 (779)
|.++.+ .|..|+++++|++|+|++|.+. .+|. +.++++|++|++++|...
T Consensus 109 n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-------------------- 160 (597)
T 3oja_B 109 NAIRYL-------PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-------------------- 160 (597)
T ss_dssp SCCCCC-------CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CcCCCC-------CHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC--------------------
Confidence 777664 4555677777777777777644 3333 345667777777666543
Q ss_pred cccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCC
Q 004022 201 EEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFEN 280 (779)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~ 280 (779)
...|..++.+++|++|++++|.+.+. + +..+++|+.|++++|.+.+ +...++|+.|++++|.++.++..+
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~-- 230 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV-- 230 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--
T ss_pred CCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc--
Confidence 22334677778888888888775543 2 4557778888888775543 234457888888888887776543
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
.++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..+.. +..+++|+.|+
T Consensus 231 ~~~L~~L~L~~n~l~~-------------------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~ 284 (597)
T 3oja_B 231 NVELTILKLQHNNLTD-------------------------TAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLY 284 (597)
T ss_dssp CSCCCEEECCSSCCCC-------------------------CGGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEE
T ss_pred CCCCCEEECCCCCCCC-------------------------ChhhccCCCCCEEECCCCccCCCCHHH-hcCccCCCEEE
Confidence 3678888888876543 133566778888888888887765554 56788888888
Q ss_pred ecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEecCC
Q 004022 361 ISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCK 432 (779)
Q Consensus 361 Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c~ 432 (779)
+++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|.+.+.....+++|+.|++++|+
T Consensus 285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred CCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 888888888877778888888888888888888888888888888888887765544444555555555554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=257.53 Aligned_cols=297 Identities=14% Similarity=0.090 Sum_probs=199.8
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecC-CCCCCCCCCceEEEccCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLP-NGLDYLPKKLRYLHWDTYPLRTLP 107 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~n~l~~lp 107 (779)
++++++....+++..|.++++|++|++++|.++ .++ ..+..+ ++|++|++++|.++.+|
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-------------------~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-------------------EIDTYAFAYA-HTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCC-------------------EECTTTTTTC-TTCCEEECCSSCCCCCC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCccc-------------------ccChhhccCC-CCcCEEECCCCCCCcCC
Confidence 445555566788899999999999999999885 344 466666 59999999999999987
Q ss_pred CC-C-CCCCCcEEECCCCCCCCccCCCCcccCc-cccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCcccc
Q 004022 108 SN-F-KPKNLVELNLRCSKVEQPWEGEKACVPS-SIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEF 183 (779)
Q Consensus 108 ~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~-~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~ 183 (779)
.. + .+++|++|+|++|.++.+ |. .|.++++|++|++++|.+....|. +.++++|++|++++|.....-
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~~l--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLSSL--------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred HHHhcCCCCCCEEECCCCccCcC--------CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 65 5 899999999999999974 44 468999999999999997665554 667999999999998765443
Q ss_pred CCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcE
Q 004022 184 PQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKR 263 (779)
Q Consensus 184 ~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 263 (779)
...+.+|+.|++++|.+..++. .++|++|++++|.+... |.. ..++|++|++++|.+.+. ..+..+++|++
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~~~----~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 252 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVE 252 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEEEC----CSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred cccccccceeecccccccccCC----CCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccE
Confidence 4445566666666666554432 24566666666554332 221 134555555555544432 33445555555
Q ss_pred eecCCcCCCcC-CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCC
Q 004022 264 IYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGL 342 (779)
Q Consensus 264 L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~ 342 (779)
|++++|.++.+ |..+..+++| +.|++++|.+.
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L-----------------------------------------------~~L~L~~n~l~ 285 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRL-----------------------------------------------ERLYISNNRLV 285 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSC-----------------------------------------------CEEECCSSCCC
T ss_pred EECCCCcCCCcChhHccccccC-----------------------------------------------CEEECCCCcCc
Confidence 55555555433 3334444444 44444444444
Q ss_pred CccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCC
Q 004022 343 ESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
+.... ...+++|+.|++++|.+..+|..+..+++|++|++++|.++.++ +..+++|+.|++++|++.
T Consensus 286 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 286 ALNLY--GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp EEECS--SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred ccCcc--cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 32211 23566777777777777777766667777777777777777765 667777777777777654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=272.88 Aligned_cols=394 Identities=20% Similarity=0.190 Sum_probs=222.4
Q ss_pred EeecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCC-CCCCCCCceEEEccCCCCCCC
Q 004022 28 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNG-LDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~n~l~~l 106 (779)
.||++++....+++++|+++++|++|+|++|+++ .+|.+ +..+ .+|++|++++|.++.+
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-------------------~l~~~~f~~L-~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-------------------SLALGAFSGL-SSLQKLVAVETNLASL 139 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-------------------EECGGGGTTC-TTCCEEECTTSCCCCS
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-------------------CCCHHHhcCC-CCCCEEECCCCcCCCC
Confidence 4677777777899999999999999999999985 44443 4455 5888888888888888
Q ss_pred CCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC----------------------
Q 004022 107 PSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS---------------------- 162 (779)
Q Consensus 107 p~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~---------------------- 162 (779)
|.. | .+++|++|+|++|.++.+ . +|..++.+++|++|+|++|++.+..+.
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~---~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSF---K---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCC---C---CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ChhhhhcCcccCeeccccCccccC---C---CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence 764 4 778888888888887652 1 466777788888888888775432221
Q ss_pred ------CCCCCCCcEEEecCCcCccc------------------------------------------------------
Q 004022 163 ------NLHFVCPVTINFSYCVNLIE------------------------------------------------------ 182 (779)
Q Consensus 163 ------~~~l~~L~~L~L~~~~~l~~------------------------------------------------------ 182 (779)
......++.+++.++.....
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 11112223333333211100
Q ss_pred -------cCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhh
Q 004022 183 -------FPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEIL 255 (779)
Q Consensus 183 -------~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l 255 (779)
......+++.+.+.++.+..++ .+.....|+.|++.+|.+....+. .+..|+.+.+..+...... ..
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~ 367 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SE 367 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CC
T ss_pred cccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--cc
Confidence 0001123444555555444443 234456677777777654332221 2334444444443322211 12
Q ss_pred hcCccCcEeecCCcCCCc---CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCC-ccccCccc
Q 004022 256 EKMEHLKRIYSDRTPITE---LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLP-SSVALSNM 330 (779)
Q Consensus 256 ~~l~~L~~L~L~~n~i~~---lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp-~~l~~l~~ 330 (779)
..+++|+.|++++|.+.. .+..+..+.+|+.|++..+.... .+..+..+++|+. .+..++.....+ ..+..+++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccc
Confidence 234444444444444431 12223334444444444433222 2222333333333 222222222222 23455666
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc--CCcccCCCCCccEEEEecCCCccC-ChhccCCCCCCEEEc
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE--IPQEIAYLSSLEILYLSGNNFESL-PAIIKQMSQLRFIHL 407 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 407 (779)
++.++++.|.+....+.. +..++.|+.|++++|.... .|..+..+++|++|+|++|+++.+ |..+.++++|+.|+|
T Consensus 447 l~~l~ls~n~l~~~~~~~-~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp CCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccccc-cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 777777777665554433 4566777777777775433 556667777777777777777755 355677777777777
Q ss_pred CCCCCCCcCCC---CCCCccEEEEecCCCCCCCC----CCCCCccEEEeeCCCCC
Q 004022 408 EDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLP----VLPFCLESLDLTGCNML 455 (779)
Q Consensus 408 s~n~~~~~~~~---~~~~L~~L~l~~c~~l~~lp----~l~~~L~~L~ls~n~~l 455 (779)
++|.+.+..+. .+++|+.|++++|+.....| .++.+|++|++++|++.
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 77766655443 23567777777775543333 34568899999998764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=267.59 Aligned_cols=300 Identities=13% Similarity=0.080 Sum_probs=204.3
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
++++++....+++..|.++++|++|++++|.++ ...|..+..+ .+|++|++++|.++.+|.
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~------------------~~~~~~~~~l-~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------------------EIDTYAFAYA-HTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCC------------------EECTTTTTTC-TTCCEEECCSSCCCCCCT
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC------------------CCChHHhcCC-CCCCEEECCCCcCCCCCH
Confidence 555666667789999999999999999999985 2234466677 599999999999999886
Q ss_pred C-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCC
Q 004022 109 N-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQ 185 (779)
Q Consensus 109 ~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~ 185 (779)
. | .+++|++|+|++|.++.+ .+..|+++++|++|+|++|.+....|. +.++++|+.|++++|......+.
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 189 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSL-------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCC-------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG
T ss_pred HHHcCCCCCCEEEeeCCCCCCC-------CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh
Confidence 5 4 899999999999999974 334468999999999999997766665 66799999999999987654445
Q ss_pred cCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEee
Q 004022 186 ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY 265 (779)
Q Consensus 186 ~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 265 (779)
.+++|+.|++++|.+..++ ..++|+.|++++|.+... +..+ .++|+.|++++|.+.+ +..+..+++|+.|+
T Consensus 190 ~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~ 260 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVD 260 (597)
T ss_dssp GCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred hhhhhhhhhcccCcccccc----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEE
Confidence 5566666666666665443 234566666666654322 2211 2455555555555443 23445555555555
Q ss_pred cCCcCCCcC-CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCc
Q 004022 266 SDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES 344 (779)
Q Consensus 266 L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 344 (779)
+++|.++.+ |..++.+++|+.|+|+ +|.+.+.
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls-----------------------------------------------~N~l~~l 293 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRLERLYIS-----------------------------------------------NNRLVAL 293 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECT-----------------------------------------------TSCCCEE
T ss_pred CCCCccCCCCHHHhcCccCCCEEECC-----------------------------------------------CCCCCCC
Confidence 555555533 3344445555555554 4444432
Q ss_pred cChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCC
Q 004022 345 FPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
... ...+++|+.|++++|.+..+|..+..+++|+.|+|++|.++.+| +..+++|+.|++++|++..
T Consensus 294 ~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 294 NLY--GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp ECS--SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred Ccc--cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 211 23566777777777777777776777777777777777777665 5667777777777777643
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=241.87 Aligned_cols=266 Identities=18% Similarity=0.178 Sum_probs=187.6
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
.+|++++++++.++.+|..+. ++|++|+|++|+++.+ .+..|+++++|++|+|++|.+....|. +.++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEI-------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCB-------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEe-------ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 479999999999999998764 6899999999999985 445788999999999999986665454 5668888
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
++|++++|.. ..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|....
T Consensus 103 ~~L~Ls~n~l---------------------~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 103 ERLYLSKNQL---------------------KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CEEECCSSCC---------------------SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CEEECCCCcC---------------------CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 8888887764 44444443 567777777776665555556667777777777766643
Q ss_pred --ccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 250 --HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 250 --~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
..+..+..+++|++|++++|.++.+|..+. ++|+.|++++|.+.+.. |..+..
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~-----------------------~~~~~~ 214 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVD-----------------------AASLKG 214 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEEC-----------------------TGGGTT
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccC-----------------------HHHhcC
Confidence 456667777777777777777777776543 67777777776554332 233455
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChh-cc------CCC
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAI-IK------QMS 400 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~------~l~ 400 (779)
+++|+.|++++|.+.+..+.. +..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++.. +. ..+
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 667777777777766544432 4567777777777777777777777777777777777777766532 22 235
Q ss_pred CCCEEEcCCCCCC
Q 004022 401 QLRFIHLEDFNML 413 (779)
Q Consensus 401 ~L~~L~Ls~n~~~ 413 (779)
.|+.|++++|++.
T Consensus 294 ~l~~l~l~~N~~~ 306 (330)
T 1xku_A 294 SYSGVSLFSNPVQ 306 (330)
T ss_dssp CCSEEECCSSSSC
T ss_pred cccceEeecCccc
Confidence 6666666666653
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=243.44 Aligned_cols=265 Identities=15% Similarity=0.157 Sum_probs=157.2
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
.+|++++++++.++.+|..+ .++|++|++++|.++.+ .|.+|.++++|++|++++|.+....|. +.++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISEL-------RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCcc-------CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 37999999999999999876 36899999999999875 566888999999999999986655454 5668888
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC-
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL- 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~- 248 (779)
++|++++|... .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 105 ~~L~L~~n~l~---------------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 105 QKLYISKNHLV---------------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CEEECCSSCCC---------------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred CEEECCCCcCC---------------------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 88888887653 3333322 44455555544443333333444555555555554442
Q ss_pred -cccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 249 -EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 249 -~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
+..+..+..+ +|++|++++|.++.+|..+. ++|+.|++++|.+.+..+ ..+..
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~-----------------------~~l~~ 215 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL-----------------------EDLLR 215 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT-----------------------TSSTT
T ss_pred CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCH-----------------------HHhcC
Confidence 1334444444 55555555555555555432 455555555554433222 22334
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCCh-hccC------CC
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-IIKQ------MS 400 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~------l~ 400 (779)
+++|+.|++++|.+.+..+.. +..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++. .+.. .+
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGS-LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTG-GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCCCEEECCCCcCCcCChhH-hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 445555555555554433322 345556666666666666666555666666666666666665542 2222 24
Q ss_pred CCCEEEcCCCCCC
Q 004022 401 QLRFIHLEDFNML 413 (779)
Q Consensus 401 ~L~~L~Ls~n~~~ 413 (779)
+|+.|++++|++.
T Consensus 295 ~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 295 YYNGISLFNNPVP 307 (332)
T ss_dssp CBSEEECCSSSSC
T ss_pred cccceEeecCccc
Confidence 4555555555543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=229.41 Aligned_cols=285 Identities=17% Similarity=0.168 Sum_probs=184.8
Q ss_pred ccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCC
Q 004022 47 MSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSK 124 (779)
Q Consensus 47 l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~ 124 (779)
..+|+.++++++.++ .+|..+ +++|++|++++|.++.++. .+ .+++|++|+|++|.
T Consensus 30 ~c~l~~l~~~~~~l~-------------------~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-------------------KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87 (330)
T ss_dssp EEETTEEECTTSCCC-------------------SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCeEEEecCCCcc-------------------ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc
Confidence 447899999988774 566544 3689999999999999987 45 89999999999999
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccC
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP 204 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp 204 (779)
++.+ .|..|+.+++|++|++++|.+ +.+|.... ++|++|++++|... .++
T Consensus 88 l~~~-------~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~-~~L~~L~l~~n~l~---------------------~~~ 137 (330)
T 1xku_A 88 ISKI-------SPGAFAPLVKLERLYLSKNQL-KELPEKMP-KTLQELRVHENEIT---------------------KVR 137 (330)
T ss_dssp CCCB-------CTTTTTTCTTCCEEECCSSCC-SBCCSSCC-TTCCEEECCSSCCC---------------------BBC
T ss_pred CCee-------CHHHhcCCCCCCEEECCCCcC-CccChhhc-ccccEEECCCCccc---------------------ccC
Confidence 9985 688899999999999999984 46665332 67777777777653 333
Q ss_pred c-ccCCCCCccEEeeeCCCCCc--ccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCC
Q 004022 205 S-SIECLTDLEVLDLRGCKRLK--RISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFEN 280 (779)
Q Consensus 205 ~-~l~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~ 280 (779)
. .+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|..+. ++|++|++++|.++.+ |..+..
T Consensus 138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT
T ss_pred HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC
Confidence 2 34555666666666655432 344445556666666666554432 333222 5566666666666654 344666
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+..... . +..+++|+.|+
T Consensus 215 l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~lp~-~-l~~l~~L~~L~ 269 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDN-----------------------GSLANTPHLRELHLNNNKLVKVPG-G-LADHKYIQVVY 269 (330)
T ss_dssp CTTCCEEECCSSCCCEECT-----------------------TTGGGSTTCCEEECCSSCCSSCCT-T-TTTCSSCCEEE
T ss_pred CCCCCEEECCCCcCceeCh-----------------------hhccCCCCCCEEECCCCcCccCCh-h-hccCCCcCEEE
Confidence 6666666666654433221 123445566666666666553322 2 34667777777
Q ss_pred ecCCCCccCCcc-cC------CCCCccEEEEecCCCc---cCChhccCCCCCCEEEcCCCC
Q 004022 361 ISDYAVREIPQE-IA------YLSSLEILYLSGNNFE---SLPAIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 361 Ls~~~l~~~p~~-l~------~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~n~ 411 (779)
+++|.++.++.. +. ..++|+.|++++|.+. ..|..+..+++|+.+++++|+
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 777777765432 22 2467888888888776 234678888888888888874
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=236.79 Aligned_cols=283 Identities=16% Similarity=0.166 Sum_probs=202.4
Q ss_pred cCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCC
Q 004022 48 SNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKV 125 (779)
Q Consensus 48 ~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i 125 (779)
.+|+.++++++.++ .+|..+ +++|++|++++|.++.++. .+ .+++|++|+|++|++
T Consensus 33 c~l~~l~~~~~~l~-------------------~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 90 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-------------------AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90 (332)
T ss_dssp EETTEEECCSSCCS-------------------SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCEEECCCCCcc-------------------ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc
Confidence 47999999999874 566554 3589999999999999865 45 899999999999999
Q ss_pred CCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc
Q 004022 126 EQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS 205 (779)
Q Consensus 126 ~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~ 205 (779)
+.+ .|.+|+++++|++|++++|.+ +.+|.... ++|++|++++|.. ..++.
T Consensus 91 ~~~-------~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~-~~L~~L~l~~n~i---------------------~~~~~ 140 (332)
T 2ft3_A 91 SKI-------HEKAFSPLRKLQKLYISKNHL-VEIPPNLP-SSLVELRIHDNRI---------------------RKVPK 140 (332)
T ss_dssp CEE-------CGGGSTTCTTCCEEECCSSCC-CSCCSSCC-TTCCEEECCSSCC---------------------CCCCS
T ss_pred Ccc-------CHhHhhCcCCCCEEECCCCcC-CccCcccc-ccCCEEECCCCcc---------------------CccCH
Confidence 975 678899999999999999985 46665332 6677777766654 44444
Q ss_pred -ccCCCCCccEEeeeCCCCC--cccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCC-ccCCCC
Q 004022 206 -SIECLTDLEVLDLRGCKRL--KRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELP-SSFENL 281 (779)
Q Consensus 206 -~l~~l~~L~~L~L~~~~~~--~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l 281 (779)
.+..+++|++|++++|.+. +..+..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.++.++ ..+..+
T Consensus 141 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCC
Confidence 4667777777777777663 2455556656 77777777776554 444332 57777788887777665 457777
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEe
Q 004022 282 PGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHI 361 (779)
Q Consensus 282 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L 361 (779)
++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+... |.. +..+++|+.|++
T Consensus 217 ~~L~~L~L~~N~l~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~l-p~~-l~~l~~L~~L~l 271 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIEN-----------------------GSLSFLPTLRELHLDNNKLSRV-PAG-LPDLKLLQVVYL 271 (332)
T ss_dssp TTCSCCBCCSSCCCCCCT-----------------------TGGGGCTTCCEEECCSSCCCBC-CTT-GGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCh-----------------------hHhhCCCCCCEEECCCCcCeec-Chh-hhcCccCCEEEC
Confidence 788888887776544322 2345667777788877777643 332 457788888888
Q ss_pred cCCCCccCCcc-cCC------CCCccEEEEecCCCc--c-CChhccCCCCCCEEEcCCCC
Q 004022 362 SDYAVREIPQE-IAY------LSSLEILYLSGNNFE--S-LPAIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 362 s~~~l~~~p~~-l~~------l~~L~~L~Ls~n~l~--~-lp~~l~~l~~L~~L~Ls~n~ 411 (779)
++|.++.++.. +.. .++|+.|++++|.+. . .|..+..+++|+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88888876532 322 467899999999876 3 44678889999999998875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=238.53 Aligned_cols=184 Identities=15% Similarity=0.173 Sum_probs=94.7
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCc-cCcEeecCCcCCC-cCCccCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKME-HLKRIYSDRTPIT-ELPSSFEN 280 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~L~~n~i~-~lp~~l~~ 280 (779)
+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.++ .+|..+..
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 333344444444444444444434444444444444444444444444444444443 4444444444444 33333444
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
++ |+.|++++|.+.+.. |..+..+++|+.|++++|.+.+..+. +..+++|++|+
T Consensus 197 l~-L~~L~Ls~N~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~ 250 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDA-----------------------SVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLD 250 (313)
T ss_dssp CC-CSEEECCSSEEEECC-----------------------GGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEE
T ss_pred Cc-ccEEECcCCcccCcC-----------------------CHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEE
Confidence 43 444444444332221 22233344455555555554443333 34566777777
Q ss_pred ecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhccCCCCCCEEEcCCCCCC
Q 004022 361 ISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 361 Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
+++|.+++ +|..+..+++|++|+|++|+++ .+|.. ..+++|+.+++++|+..
T Consensus 251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 77777763 6667777777777777777776 55553 66777777777777643
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=237.95 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=219.9
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.++++|++++|.++.+|..+. ++|++|+|++|+|+. +|. .+++|++|+|++|. ++.+|. .+++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~--------lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLL 104 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSC--------CCC---CCTTCCEEEECSCC-CSCCCC--CCTTCC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCC--------CCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCC
Confidence 468999999999999998775 899999999999987 455 57899999999998 456776 789999
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|.. ..+|..+.+|+.|++++|.+..+|.. +++|++|++++|.+.+ +|. .+.+|+.|++++|.+..
T Consensus 105 ~L~Ls~N~l-~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 105 ELSIFSNPL-THLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp EEEECSCCC-CCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred EEECcCCcC-CCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 999999865 45677888999999999999999875 4889999999997654 454 35789999999987665
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+| ..+++|+.|++++|.++.+|.. +++|+.|++++|.+.. + |. .+++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l-----------------------~~---~~~~ 222 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-L-----------------------PA---LPSG 222 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-C-----------------------CC---CCTT
T ss_pred Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-c-----------------------CC---CCCC
Confidence 55 4578899999999999998864 5789999999876542 2 22 2378
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCC
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 410 (779)
|+.|++++|.+.+.. ..+++|+.|++++|.++.+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++|
T Consensus 223 L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 223 LKELIVSGNRLTSLP-----VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSC
T ss_pred CCEEEccCCccCcCC-----CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCC
Confidence 999999999887643 367899999999999999887 678999999999999999999999999999999999
Q ss_pred CCCCcCCC
Q 004022 411 NMLQSLPE 418 (779)
Q Consensus 411 ~~~~~~~~ 418 (779)
++.+..|.
T Consensus 295 ~l~~~~~~ 302 (622)
T 3g06_A 295 PLSERTLQ 302 (622)
T ss_dssp CCCHHHHH
T ss_pred CCCCcCHH
Confidence 98876654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-26 Score=239.19 Aligned_cols=242 Identities=17% Similarity=0.153 Sum_probs=155.1
Q ss_pred CCCcEEEecCCcCcc--ccCCcC---CCccEEEecC-cCCc-ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcE
Q 004022 167 VCPVTINFSYCVNLI--EFPQIS---GKVTRLYLGQ-SAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVT 239 (779)
Q Consensus 167 ~~L~~L~L~~~~~l~--~~~~~~---~~L~~L~L~~-n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 239 (779)
.+++.|++++|...+ .+|..+ .+|++|++++ |.+. .+|..++++++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777776654 444332 3455666653 4443 45555556666666666665555555555555666666
Q ss_pred EecccccCCcccchhhhcCccCcEeecCCcCCC-cCCccCCCCC-CCCEEeccCCCCCCCCCCCCCCchhHHHHHhhccc
Q 004022 240 LILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLP-GLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASA 317 (779)
Q Consensus 240 L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~ 317 (779)
|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+.+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~--------------------- 188 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--------------------- 188 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE---------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec---------------------
Confidence 666665555555555666666666666666665 5555555555 56666666554433
Q ss_pred CCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc-cCChhc
Q 004022 318 ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE-SLPAII 396 (779)
Q Consensus 318 ~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l 396 (779)
.+|..+..++ |+.|++++|.+.+..+.. +..+++|+.|++++|.++..+..+..+++|++|+|++|.++ .+|..+
T Consensus 189 --~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 189 --KIPPTFANLN-LAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp --ECCGGGGGCC-CSEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred --cCChHHhCCc-ccEEECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH
Confidence 3344455555 888888888877655543 56788888888888888775555777888888888888887 777788
Q ss_pred cCCCCCCEEEcCCCCCCCcCCCC--CCCccEEEEecCCC
Q 004022 397 KQMSQLRFIHLEDFNMLQSLPEL--PLCLKYLHLIDCKM 433 (779)
Q Consensus 397 ~~l~~L~~L~Ls~n~~~~~~~~~--~~~L~~L~l~~c~~ 433 (779)
..+++|+.|++++|++.+.+|.. +++|+.|++.+|+.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 88888888888888877777653 24455555555543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=234.29 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=155.3
Q ss_pred CCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCC
Q 004022 91 KKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHF 166 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l 166 (779)
++|++|++++|.++.+|. .+ .+++|++|++++|+++.+ .|.+|.++++|++|++++|.+. .+|. +.++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l 123 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-------EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPL 123 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-------CHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCC
Confidence 356666666666665554 23 556666666666665543 3445555666666666665533 2322 3344
Q ss_pred CCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc--ccCCCCCccEEeeeCCCCCcc-cccccCCCCCCcEEecc
Q 004022 167 VCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS--SIECLTDLEVLDLRGCKRLKR-ISTSFCKLRSLVTLILL 243 (779)
Q Consensus 167 ~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~L~ 243 (779)
++|++|++++| .+..+|. .+..+++|++|++++|...+. .+..+.++++|++|+++
T Consensus 124 ~~L~~L~L~~n---------------------~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 124 SSLTFLNLLGN---------------------PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp TTCSEEECTTC---------------------CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred ccCCEEECCCC---------------------CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 45555544444 3455655 567777788888877743333 34557777777777777
Q ss_pred cccCCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC
Q 004022 244 GCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP 322 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp 322 (779)
+|.+.+..|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+..
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------------ 244 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------------ 244 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------------
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc------------------
Confidence 7777776677777777777777777777766654 334667777777776554432221100
Q ss_pred ccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCccCChh-c
Q 004022 323 SSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFESLPAI-I 396 (779)
Q Consensus 323 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l 396 (779)
......++.++++++.+.+ +|..+..+++|++|++++|+++.+|.. +
T Consensus 245 ---------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 245 ---------------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp -----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ---------------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 1123445555555555443 566677788888888888888888866 4
Q ss_pred cCCCCCCEEEcCCCCCCCcCC
Q 004022 397 KQMSQLRFIHLEDFNMLQSLP 417 (779)
Q Consensus 397 ~~l~~L~~L~Ls~n~~~~~~~ 417 (779)
..+++|++|++++|++....|
T Consensus 298 ~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCCCCEEEeeCCCccCcCC
Confidence 788888888888887765443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-24 Score=225.75 Aligned_cols=217 Identities=24% Similarity=0.362 Sum_probs=165.3
Q ss_pred ccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCC
Q 004022 47 MSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKV 125 (779)
Q Consensus 47 l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i 125 (779)
..+++.|++++|.++ .+|..+..+ .+|++|++++|.++.+|..+ .+++|++|+|++|.+
T Consensus 80 ~~~l~~L~L~~n~l~-------------------~lp~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l 139 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-------------------QFPDQAFRL-SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139 (328)
T ss_dssp STTCCEEEEESSCCS-------------------SCCSCGGGG-TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC
T ss_pred ccceeEEEccCCCch-------------------hcChhhhhC-CCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc
Confidence 478999999999883 678888887 59999999999999999887 899999999999999
Q ss_pred CCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCC----------CCCCCcEEEecCCcCccccCCc---CCCccE
Q 004022 126 EQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNL----------HFVCPVTINFSYCVNLIEFPQI---SGKVTR 192 (779)
Q Consensus 126 ~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~----------~l~~L~~L~L~~~~~l~~~~~~---~~~L~~ 192 (779)
+. +|..++++++|++|++++|...+.+|... ++++|++|++++|... .+|.. +.+|+.
T Consensus 140 ~~--------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 140 RA--------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp CC--------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred cc--------CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 86 78889999999999999988888888743 2777888888777554 55543 345677
Q ss_pred EEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC
Q 004022 193 LYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 193 L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
|++++|.+..+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|.+.
T Consensus 211 L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 77777777777766777777777777777777777766777777777777777777777776777777777777775544
Q ss_pred -cCCccCCCCCCCCEEeccCC
Q 004022 273 -ELPSSFENLPGLEVLFVEDC 292 (779)
Q Consensus 273 -~lp~~l~~l~~L~~L~L~~~ 292 (779)
.+|.+++.+++|+.+++..+
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGG
T ss_pred hhccHHHhhccCceEEeCCHH
Confidence 56666777777777766653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-27 Score=266.22 Aligned_cols=350 Identities=16% Similarity=0.102 Sum_probs=216.3
Q ss_pred EeecccccccccCh-hhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCC
Q 004022 28 FLDLSKIKGINLDP-RAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL 106 (779)
Q Consensus 28 ~Ld~s~~~~~~l~~-~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~l 106 (779)
.||++++....... ..|..+++|+.|++++|.+++. ....++..+..+ ++|++|++++|.++..
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--------------~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~ 71 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--------------RCKDISSALRVN-PALAELNLRSNELGDV 71 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH--------------HHHHHHHHHHTC-TTCCEEECTTCCCHHH
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH--------------HHHHHHHHHHhC-CCcCEEeCCCCcCChH
Confidence 45555554333333 3488999999999999988411 112445556666 4899999999998642
Q ss_pred C--CCC-CCC----CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC------CCCCCCCcEEE
Q 004022 107 P--SNF-KPK----NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS------NLHFVCPVTIN 173 (779)
Q Consensus 107 p--~~~-~l~----~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~------~~~l~~L~~L~ 173 (779)
. ..+ .+. +|++|+|++|+++...-+. ++..+..+++|++|+|++|.+....+. ....++|++|+
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~---l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV---LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH---HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH---HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE
Confidence 1 111 333 7999999999988421011 677888999999999999985432111 12256799999
Q ss_pred ecCCcCcccc----CC---cCCCccEEEecCcCCcccC-cccC-----CCCCccEEeeeCCCCCcc----cccccCCCCC
Q 004022 174 FSYCVNLIEF----PQ---ISGKVTRLYLGQSAIEEVP-SSIE-----CLTDLEVLDLRGCKRLKR----ISTSFCKLRS 236 (779)
Q Consensus 174 L~~~~~l~~~----~~---~~~~L~~L~L~~n~i~~lp-~~l~-----~l~~L~~L~L~~~~~~~~----lp~~l~~l~~ 236 (779)
+++|...... +. ...+|+.|++++|.+.... ..+. ..++|++|++++|.+... ++..+..+++
T Consensus 149 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 228 (461)
T 1z7x_W 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT
T ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCC
Confidence 9998765422 21 2357777777777764321 1111 245777777777765542 4555666777
Q ss_pred CcEEecccccCCccc-----chhhhcCccCcEeecCCcCCCc-----CCccCCCCCCCCEEeccCCCCCCCCCCCCCCch
Q 004022 237 LVTLILLGCLNLEHF-----PEILEKMEHLKRIYSDRTPITE-----LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLE 306 (779)
Q Consensus 237 L~~L~L~~~~~~~~~-----p~~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 306 (779)
|++|++++|.+.... +..+..+++|++|++++|.++. ++..+..+++|++|++++|.+....+.
T Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~------ 302 (461)
T 1z7x_W 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR------ 302 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH------
T ss_pred ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH------
Confidence 777777777654332 1222246777777777777775 566666677777777777654221100
Q ss_pred hHHHHHhhcccCCcCCccc-cCccccCeeeccCCCCCCccCh---hhccCCCCCcEEEecCCCCccC-Cc----ccC-CC
Q 004022 307 YLYYILAAASAISQLPSSV-ALSNMLRSLDSSHCKGLESFPR---TFLLGLSAMGLLHISDYAVREI-PQ----EIA-YL 376 (779)
Q Consensus 307 ~L~~~~~~~~~~~~lp~~l-~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~Ls~~~l~~~-p~----~l~-~l 376 (779)
. +...+ ...++|++|++++|.+...... ..+..+++|++|++++|.+++. +. .+. ..
T Consensus 303 ~-------------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 303 L-------------LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp H-------------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred H-------------HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 0 00001 1234677777777776554211 1134567777777777776652 22 222 25
Q ss_pred CCccEEEEecCCCc-----cCChhccCCCCCCEEEcCCCCCCC
Q 004022 377 SSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 377 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
++|++|++++|.++ .+|..+..+++|++|++++|++..
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 67777777777777 566667777777777777776643
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=222.96 Aligned_cols=156 Identities=24% Similarity=0.416 Sum_probs=91.3
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
.++++|++++|.++.+|..+ .+++|++|+|++|.++. +|..++++++|++|+|++|.+. .+|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~--------lp~~~~~l~~L~~L~Ls~n~l~-~lp-------- 143 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME--------LPDTMQQFAGLETLTLARNPLR-ALP-------- 143 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC--------CCSCGGGGTTCSEEEEESCCCC-CCC--------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc--------hhHHHhccCCCCEEECCCCccc-cCc--------
Confidence 36667777777766666655 66666666666666664 5666666666666666666533 333
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccC---------CCCCCcEE
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFC---------KLRSLVTL 240 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~---------~l~~L~~L 240 (779)
..++++++|++|++++|...+.+|..+. ++++|++|
T Consensus 144 -----------------------------------~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L 188 (328)
T 4fcg_A 144 -----------------------------------ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188 (328)
T ss_dssp -----------------------------------GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEE
T ss_pred -----------------------------------HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEE
Confidence 3344444444444444444444443332 35666666
Q ss_pred ecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCC
Q 004022 241 ILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLP 299 (779)
Q Consensus 241 ~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 299 (779)
++++|.+. .+|..++.+++|++|++++|.++.+|..++.+++|+.|++++|++.+.+|
T Consensus 189 ~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp EEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred ECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH
Confidence 66665544 55555666666666666666666666666666666666666665554443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=229.35 Aligned_cols=270 Identities=17% Similarity=0.169 Sum_probs=224.1
Q ss_pred hcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCC
Q 004022 45 TNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSK 124 (779)
Q Consensus 45 ~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~ 124 (779)
....+++.|++++|.++ .+|..+. ++|++|++++|.++.+|. .+++|++|+|++|+
T Consensus 37 c~~~~l~~L~ls~n~L~-------------------~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~ 92 (622)
T 3g06_A 37 CLNNGNAVLNVGESGLT-------------------TLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ 92 (622)
T ss_dssp HHHHCCCEEECCSSCCS-------------------CCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCC
T ss_pred ccCCCCcEEEecCCCcC-------------------ccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc
Confidence 34457999999999884 6666554 599999999999999998 67899999999999
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccC
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP 204 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp 204 (779)
|+. +|. .+++|++|+|++|. ++.+|. .+++|+.|++++|.. ..+|..+.+|+.|++++|.+..+|
T Consensus 93 l~~--------lp~---~l~~L~~L~Ls~N~-l~~l~~--~l~~L~~L~L~~N~l-~~lp~~l~~L~~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 93 LTS--------LPV---LPPGLLELSIFSNP-LTHLPA--LPSGLCKLWIFGNQL-TSLPVLPPGLQELSVSDNQLASLP 157 (622)
T ss_dssp CSC--------CCC---CCTTCCEEEECSCC-CCCCCC--CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCC
T ss_pred CCc--------CCC---CCCCCCEEECcCCc-CCCCCC--CCCCcCEEECCCCCC-CcCCCCCCCCCEEECcCCcCCCcC
Confidence 987 555 77999999999998 455666 678999999999974 568888899999999999999988
Q ss_pred cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCC
Q 004022 205 SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGL 284 (779)
Q Consensus 205 ~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L 284 (779)
.. +.+|+.|++++|.+.. +| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|
T Consensus 158 ~~---~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L 223 (622)
T 3g06_A 158 AL---PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGL 223 (622)
T ss_dssp CC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTC
T ss_pred Cc---cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCC
Confidence 64 4689999999988654 56 447899999999988765 444 357899999999999999864 5899
Q ss_pred CEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCC
Q 004022 285 EVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY 364 (779)
Q Consensus 285 ~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~ 364 (779)
+.|++++|.+.+ + | ..+++|+.|++++|.+..... .+++|+.|++++|
T Consensus 224 ~~L~Ls~N~L~~-l-----------------------p---~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 224 KELIVSGNRLTS-L-----------------------P---VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRN 271 (622)
T ss_dssp CEEECCSSCCSC-C-----------------------C---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS
T ss_pred CEEEccCCccCc-C-----------------------C---CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCC
Confidence 999999986543 2 2 245789999999999875433 6789999999999
Q ss_pred CCccCCcccCCCCCccEEEEecCCCcc-CChhccCC
Q 004022 365 AVREIPQEIAYLSSLEILYLSGNNFES-LPAIIKQM 399 (779)
Q Consensus 365 ~l~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l 399 (779)
.++.+|..+..+++|+.|+|++|.++. .|..+..+
T Consensus 272 ~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 999999999999999999999999983 44544443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=223.09 Aligned_cols=244 Identities=23% Similarity=0.209 Sum_probs=172.4
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
...+.++.++..++.+|..+. ++|++|+|++|+|+.+ .|..|.++++|++|+|++|.+....+. +.++++|
T Consensus 54 ~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 54 NQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMI-------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125 (452)
T ss_dssp SSSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceE-------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccC
Confidence 356788888889999987664 6899999999999875 577888999999999999885544433 5557777
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 248 (779)
++|++++|.. ..+|. .+..+++|++|++++|.+....+..+..+++|++|++++|...
T Consensus 126 ~~L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l 184 (452)
T 3zyi_A 126 NTLELFDNWL---------------------TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184 (452)
T ss_dssp CEEECCSSCC---------------------SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC
T ss_pred CEEECCCCcC---------------------CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc
Confidence 7777777654 44443 4677788888888887766555556777888888888876666
Q ss_pred cccch-hhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 249 EHFPE-ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 249 ~~~p~-~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
+.++. .+..+++|++|++++|.++.+|. +..+++|+.|++++|.+.
T Consensus 185 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~-------------------------------- 231 (452)
T 3zyi_A 185 EYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFP-------------------------------- 231 (452)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCS--------------------------------
T ss_pred cccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCc--------------------------------
Confidence 55544 46677777777777777776653 555556666666555433
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCccCC-hhccCCCCCCEE
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFI 405 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 405 (779)
+..+.. +.++++|+.|++++|.+.. .+..+..+++|+.|+|++|+++.+| ..+..+++|+.|
T Consensus 232 ---------------~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 232 ---------------EIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp ---------------EECGGG-GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred ---------------ccCccc-ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 322222 4566667777777777766 3556777888888888888888776 446778888888
Q ss_pred EcCCCCC
Q 004022 406 HLEDFNM 412 (779)
Q Consensus 406 ~Ls~n~~ 412 (779)
++++|++
T Consensus 296 ~L~~Np~ 302 (452)
T 3zyi_A 296 HLHHNPW 302 (452)
T ss_dssp ECCSSCE
T ss_pred EccCCCc
Confidence 8888764
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=222.52 Aligned_cols=244 Identities=20% Similarity=0.194 Sum_probs=171.3
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
...+.++.++..++.+|..+. ++++.|+|++|+|+.+ .+..|.++++|++|+|++|.+....+. +.++++|
T Consensus 43 ~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 43 NQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQII-------KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp TTSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEE-------CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCee-------CHHHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 356788888999999998764 6889999999999875 556788899999999998875433322 4556777
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 248 (779)
++|++++|.. ..++. .+..+++|++|++++|.+....+..+..+++|++|++++|...
T Consensus 115 ~~L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l 173 (440)
T 3zyj_A 115 NTLELFDNRL---------------------TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173 (440)
T ss_dssp CEEECCSSCC---------------------SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC
T ss_pred CEEECCCCcC---------------------CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc
Confidence 7777766644 44544 5677788888888887766555556777888888888776665
Q ss_pred cccch-hhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 249 EHFPE-ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 249 ~~~p~-~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
+.++. .+..+++|++|++++|.++.+|. +..+++|+.|++++|.+.+..|.
T Consensus 174 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~--------------------------- 225 (440)
T 3zyj_A 174 SYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPG--------------------------- 225 (440)
T ss_dssp CEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTT---------------------------
T ss_pred ceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChh---------------------------
Confidence 55543 56777777777777777777664 55666666666666544332221
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC-CcccCCCCCccEEEEecCCCccCC-hhccCCCCCCEE
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFI 405 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 405 (779)
. +.++++|+.|++++|.++.+ +..+..+++|+.|+|++|+++.+| ..+..+++|+.|
T Consensus 226 --------------------~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 226 --------------------S-FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp --------------------T-TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred --------------------h-hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 1 34566666777777776663 455777788888888888888776 346778888888
Q ss_pred EcCCCCC
Q 004022 406 HLEDFNM 412 (779)
Q Consensus 406 ~Ls~n~~ 412 (779)
+|++|++
T Consensus 285 ~L~~Np~ 291 (440)
T 3zyj_A 285 HLHHNPW 291 (440)
T ss_dssp ECCSSCE
T ss_pred EcCCCCc
Confidence 8887764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-23 Score=216.18 Aligned_cols=244 Identities=20% Similarity=0.234 Sum_probs=133.9
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC---CCCCCCCCCCc
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS---FPSNLHFVCPV 170 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~---~p~~~~l~~L~ 170 (779)
+.++++++.++.+|..+. ++|++|+|++|+++.+ .+..|.++++|++|+|++|.+... .+.+.++++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSL-------PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCC-------CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCcc-------CHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 356666666777766543 5677777777776653 222356667777777776653211 11122344444
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc-cccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|++++|. +..+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 82 ~L~Ls~n~---------------------i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 82 YLDLSFNG---------------------VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp EEECCSCS---------------------EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred EEECCCCc---------------------cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc
Confidence 44444443 34555555566666666666665443332 345556666666666666555
Q ss_pred ccchhhhcCccCcEeecCCcCCCc--CCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITE--LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL 327 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~ 327 (779)
..+..+..+++|++|++++|.++. +|..+..+++|+.|++++|.+.+..| ..+..
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~ 197 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-----------------------TAFNS 197 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----------------------TTTTT
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-----------------------HHhcC
Confidence 555666666666666666666654 55556666666666666655433222 22333
Q ss_pred ccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCcc-CCcccCCCC-CccEEEEecCCCc
Q 004022 328 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLS-SLEILYLSGNNFE 390 (779)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~-~L~~L~Ls~n~l~ 390 (779)
+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+ .|..+..++ +|++|+|++|.++
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 445555555555544433222 3455556666666665555 334445543 5666666666554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=212.11 Aligned_cols=222 Identities=17% Similarity=0.154 Sum_probs=142.3
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTI 172 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L 172 (779)
++++.+++.++.+|..+ +++|++|++++|.++.+ .+..|..+++|++|++++|.+....|. +.++++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~-------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHV-------PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCcc-------CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 67788888888888655 46788888888888774 445677888888888888875544343 5557777777
Q ss_pred EecCCcCccccCCcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 173 NFSYCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 173 ~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
++++|..+ ..+ |..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..
T Consensus 86 ~l~~n~~l--------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 86 DLSDNAQL--------------------RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp ECCSCTTC--------------------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred eCCCCCCc--------------------cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 77776533 333 445666677777777777666655666666777777777776666555
Q ss_pred chhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 252 PEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
+..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..|. .+..+++
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------~~~~l~~ 202 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-----------------------AFRDLGR 202 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----------------------TTTTCTT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh-----------------------HccCccc
Confidence 55566677777777777777766653 66677777777776655433322 2334455
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCc
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR 367 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~ 367 (779)
|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 203 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 203 LMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEE
T ss_pred ccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCcc
Confidence 5556665555554322 22445555555555555544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-26 Score=253.92 Aligned_cols=362 Identities=15% Similarity=0.118 Sum_probs=243.6
Q ss_pred CCCceEEEccCCCCCCCCCC--C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC-CC-C
Q 004022 90 PKKLRYLHWDTYPLRTLPSN--F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP-SN-L 164 (779)
Q Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p-~~-~ 164 (779)
|++|++|++++|.++..+.. + .+++|++|+|++|+++...... ++..+..+++|++|+|++|.+....+ .+ .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~---l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD---ISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHH---HHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHH---HHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 35788999998888755422 3 6788999999998887421001 56677788899999998887543222 11 1
Q ss_pred CCC----CCcEEEecCCcCcc----ccC---CcCCCccEEEecCcCCccc-----Ccc-cCCCCCccEEeeeCCCCCcc-
Q 004022 165 HFV----CPVTINFSYCVNLI----EFP---QISGKVTRLYLGQSAIEEV-----PSS-IECLTDLEVLDLRGCKRLKR- 226 (779)
Q Consensus 165 ~l~----~L~~L~L~~~~~l~----~~~---~~~~~L~~L~L~~n~i~~l-----p~~-l~~l~~L~~L~L~~~~~~~~- 226 (779)
.++ +|++|++++|.... .++ ....+|+.|++++|.+... ... ....++|++|++++|.+...
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 233 68899998887653 223 3445788888888887532 222 22356788899988876653
Q ss_pred ---cccccCCCCCCcEEecccccCCcccchhhh-----cCccCcEeecCCcCCCc-----CCccCCCCCCCCEEeccCCC
Q 004022 227 ---ISTSFCKLRSLVTLILLGCLNLEHFPEILE-----KMEHLKRIYSDRTPITE-----LPSSFENLPGLEVLFVEDCS 293 (779)
Q Consensus 227 ---lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~-----~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~~~ 293 (779)
++..+..+++|++|++++|.+....+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 355566778889999988876554443333 35688899998888885 56667778888999888876
Q ss_pred CCCCCCCCCCCchhHHHHHhhcccCCcC-CccccCccccCeeeccCCCCCCc----cChhhccCCCCCcEEEecCCCCcc
Q 004022 294 KLDNLPDNIGSLEYLYYILAAASAISQL-PSSVALSNMLRSLDSSHCKGLES----FPRTFLLGLSAMGLLHISDYAVRE 368 (779)
Q Consensus 294 ~~~~lp~~l~~l~~L~~~~~~~~~~~~l-p~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~Ls~~~l~~ 368 (779)
+.... + ..+ +..+..+++|++|++++|.+... ++.. +..+++|++|++++|.+.+
T Consensus 239 l~~~~---------~----------~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 239 LGDVG---------M----------AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNELGD 298 (461)
T ss_dssp CHHHH---------H----------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCCHH
T ss_pred CChHH---------H----------HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCCCch
Confidence 43210 0 001 11123467888999998877654 2222 4567889999999888765
Q ss_pred -----CCccc-CCCCCccEEEEecCCCcc-----CChhccCCCCCCEEEcCCCCCCCcCCC--------CCCCccEEEEe
Q 004022 369 -----IPQEI-AYLSSLEILYLSGNNFES-----LPAIIKQMSQLRFIHLEDFNMLQSLPE--------LPLCLKYLHLI 429 (779)
Q Consensus 369 -----~p~~l-~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~~~~~~~~--------~~~~L~~L~l~ 429 (779)
+...+ ...++|++|++++|.++. ++..+..+++|++|++++|.+....+. ..++|++|+++
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 22222 234688999999988873 456677888999999998876543221 24688999999
Q ss_pred cCCCCC----CCC----CCCCCccEEEeeCCCCCCC--------CCCCCCCccEEeeecCcC
Q 004022 430 DCKMLQ----SLP----VLPFCLESLDLTGCNMLRS--------LPELPLCLQYLNLEDCNM 475 (779)
Q Consensus 430 ~c~~l~----~lp----~l~~~L~~L~ls~n~~l~~--------l~~~~~~L~~L~l~~c~~ 475 (779)
+|..-. .+| ..+ +|++|++++|++.+. ++....+|+.|.+.++..
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~-~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANH-SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCC-CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CCCCChhhHHHHHHHHHhCC-CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 886432 333 234 899999999987643 444446788888877643
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-24 Score=226.15 Aligned_cols=257 Identities=14% Similarity=0.090 Sum_probs=143.6
Q ss_pred ceEEEccCCCCCCCCCCC--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNF--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
++.++++.+.+...+..+ .+++|++|+|++|+++.+ .|..|..+++|++|+|++|.+.... ++..+++|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~ 83 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-------SAADLAPFTKLELLNLSSNVLYETL-DLESLSTLR 83 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-------CHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC-------CHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCC
Confidence 344444444443332222 345666666666666553 3445666666666666666543322 255566666
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|... .++ ...+|+.|++++|.+..++.. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 84 ~L~Ls~n~l~-~l~-~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 84 TLDLNNNYVQ-ELL-VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp EEECCSSEEE-EEE-ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred EEECcCCccc-ccc-CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 6666665432 111 113444444444444444432 245566666666555554444455555555555555555544
Q ss_pred cchhh-hcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCcc
Q 004022 251 FPEIL-EKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 329 (779)
Q Consensus 251 ~p~~l-~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~ 329 (779)
.+..+ ..+++|++|++++|.++.++.. ..+ +
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l-----------------------------------------------~ 191 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVF-----------------------------------------------A 191 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECC-CCC-----------------------------------------------T
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccc-ccc-----------------------------------------------c
Confidence 44433 2455555555555555544321 123 4
Q ss_pred ccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc--cCChhccCCCCCCEEEc
Q 004022 330 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE--SLPAIIKQMSQLRFIHL 407 (779)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L 407 (779)
+|++|++++|.+.+..+. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++ .+|..+..+++|+.+++
T Consensus 192 ~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 192 KLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cCCEEECCCCcCCcchhh--hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 444444444444433222 44667777777777777777777788888888888888887 66777888888888777
Q ss_pred CCCC
Q 004022 408 EDFN 411 (779)
Q Consensus 408 s~n~ 411 (779)
++++
T Consensus 270 ~~~~ 273 (317)
T 3o53_A 270 QTVK 273 (317)
T ss_dssp HHHH
T ss_pred CCch
Confidence 6443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=209.75 Aligned_cols=225 Identities=17% Similarity=0.140 Sum_probs=124.3
Q ss_pred CceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCC
Q 004022 92 KLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCP 169 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L 169 (779)
+|++|++++|.++.+|.. | .+++|++|+|++|.++.+ +. .|..+..+++|++|++++|.+....+.+.++++|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~---~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK--GC---CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE--EE---EEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc--cC---cccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 444444444444444443 2 444445555544444421 00 1233334444455555444432211123344444
Q ss_pred cEEEecCCcCccccC----CcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCc-ccccccCCCCCCcEEecc
Q 004022 170 VTINFSYCVNLIEFP----QISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLK-RISTSFCKLRSLVTLILL 243 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~----~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~ 243 (779)
++|++++|......+ ..+.+|+.|++++|.+..+ +..+..+++|++|++++|.+.+ .+|..+..+++|++|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 444444443322111 1223445555555554433 3456667777777777776655 466667777777777777
Q ss_pred cccCCcccchhhhcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC
Q 004022 244 GCLNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP 322 (779)
Q Consensus 244 ~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp 322 (779)
+|.+.+..|..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.+..|..
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------- 242 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--------------------- 242 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS---------------------
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH---------------------
Confidence 777766667777777777777777777776655 4677777777777777665544433
Q ss_pred ccccCc-cccCeeeccCCCCCCc
Q 004022 323 SSVALS-NMLRSLDSSHCKGLES 344 (779)
Q Consensus 323 ~~l~~l-~~L~~L~l~~n~~~~~ 344 (779)
+..+ ++|+.|++++|++...
T Consensus 243 --~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 243 --LQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp --CCCCCTTCCEEECTTCCEECS
T ss_pred --HHhhhccCCEEEccCCCeecc
Confidence 2233 3677777777766543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=215.93 Aligned_cols=236 Identities=17% Similarity=0.151 Sum_probs=194.0
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
+++++.....++... .++|+.|+|++|.++ ...+..+..+ ++|++|++++|.++.++.
T Consensus 59 v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~ 116 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGI---PSNTRYLNLMENNIQ------------------MIQADTFRHL-HHLEVLQLGRNSIRQIEV 116 (452)
T ss_dssp EECCSSCCSSCCSCC---CTTCSEEECCSSCCC------------------EECTTTTTTC-TTCCEEECCSSCCCEECT
T ss_pred EEECCCCcCccCCCC---CCCccEEECcCCcCc------------------eECHHHcCCC-CCCCEEECCCCccCCcCh
Confidence 444444444454322 258999999999885 2335567777 599999999999998874
Q ss_pred -CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccC
Q 004022 109 -NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFP 184 (779)
Q Consensus 109 -~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~ 184 (779)
.| .+++|++|+|++|+++.+ .+..|..+++|++|+|++|.+. .+|. +.++++|+.|++++|..+..++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVI-------PSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBC-------CTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred hhccCcccCCEEECCCCcCCcc-------ChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 45 899999999999999875 4456888999999999999854 4443 6679999999999988777666
Q ss_pred C----cCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCcc
Q 004022 185 Q----ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH 260 (779)
Q Consensus 185 ~----~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 260 (779)
. .+.+|+.|++++|.+..+| .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+..+++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 4 3568999999999999887 5788999999999999988888888999999999999999998888889999999
Q ss_pred CcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 261 LKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 261 L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
|+.|++++|.++.+|.. +..+++|+.|++++|+..
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999999999988865 788999999999998653
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=214.79 Aligned_cols=237 Identities=17% Similarity=0.145 Sum_probs=190.2
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
+++++.....++.... ++++.|+|++|.++ ...+..+..+ ++|++|++++|.++.++.
T Consensus 48 v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~------------------~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~ 105 (440)
T 3zyj_A 48 VICVRKNLREVPDGIS---TNTRLLNLHENQIQ------------------IIKVNSFKHL-RHLEILQLSRNHIRTIEI 105 (440)
T ss_dssp EECCSCCCSSCCSCCC---TTCSEEECCSCCCC------------------EECTTTTSSC-SSCCEEECCSSCCCEECG
T ss_pred EEeCCCCcCcCCCCCC---CCCcEEEccCCcCC------------------eeCHHHhhCC-CCCCEEECCCCcCCccCh
Confidence 4455544445554322 67889999999884 1223566667 599999999999988874
Q ss_pred C-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCC
Q 004022 109 N-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQ 185 (779)
Q Consensus 109 ~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~ 185 (779)
. | .+++|++|+|++|+|+.+ .+..|..+++|++|+|++|.+....+. +.++++|++|++++|..+..++.
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTI-------PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSC-------CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred hhccCCccCCEEECCCCcCCee-------CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 3 5 789999999999999875 344688899999999999985433332 66789999999999877776654
Q ss_pred ----cCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccC
Q 004022 186 ----ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHL 261 (779)
Q Consensus 186 ----~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L 261 (779)
.+.+|+.|++++|.+..+| .+..+++|++|++++|.+.+..|..|.++++|++|++++|.+....+..+..+++|
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred chhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 3568899999999999888 47889999999999998888878889999999999999999888888889999999
Q ss_pred cEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 262 KRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 262 ~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
++|++++|.++.+|.. +..+++|+.|+|++|+..
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999999999988765 788999999999998753
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=203.54 Aligned_cols=207 Identities=21% Similarity=0.284 Sum_probs=179.1
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+|.++ +++|++|++++|.++.+|.. + .+++|++|+|++|.++.+ .|.+|..+++|++|++++|...+
T Consensus 25 ~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 25 AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-------DAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSCTTCC
T ss_pred cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-------CHhhcCCccCCCEEeCCCCCCcc
Confidence 556543 46999999999999999864 5 899999999999999875 57789999999999999998555
Q ss_pred CC-CC-CCCCCCCcEEEecCCcCccccCCc---CCCccEEEecCcCCcccCcc-cCCCCCccEEeeeCCCCCcccccccC
Q 004022 159 SF-PS-NLHFVCPVTINFSYCVNLIEFPQI---SGKVTRLYLGQSAIEEVPSS-IECLTDLEVLDLRGCKRLKRISTSFC 232 (779)
Q Consensus 159 ~~-p~-~~~l~~L~~L~L~~~~~l~~~~~~---~~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~ 232 (779)
.+ |. +.++++|++|++++|......+.. +.+|+.|++++|.+..++.. ++.+++|++|++++|.+.+..+..+.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 55 43 667999999999999877655544 46899999999999988864 78999999999999987766666689
Q ss_pred CCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCC
Q 004022 233 KLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDN 297 (779)
Q Consensus 233 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~ 297 (779)
.+++|++|++++|.+.+..|..+..+++|++|++++|.++.++.. +..+++|+.|++++|++...
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 999999999999999888899999999999999999999998865 89999999999999987543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-23 Score=221.27 Aligned_cols=248 Identities=19% Similarity=0.167 Sum_probs=160.1
Q ss_pred CCceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCcccc-------CCCCCcEEeccCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQ-------NFKYLSALSFKGCQSLRSFPS 162 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~-------~l~~L~~L~Ls~n~~l~~~p~ 162 (779)
.+|++|++++|.+ .+|..+ .. |++|+|++|.++.. . +|..+. ++++|++|+|++|.+.+.+|.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~---~---~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAA---R---IPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEE---E---CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCC---C---cCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 4678888888888 777654 22 88888888887542 1 455444 678888888888876666665
Q ss_pred C---CCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCC-----CCccEEeeeCCCCCcccccccCCC
Q 004022 163 N---LHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECL-----TDLEVLDLRGCKRLKRISTSFCKL 234 (779)
Q Consensus 163 ~---~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l-----~~L~~L~L~~~~~~~~lp~~l~~l 234 (779)
. ..+++|++|++++|.. ..+|..++.+ ++|++|++++|.+.+..|..++.+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l---------------------~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSW---------------------ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBC---------------------SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred HHHHhcCCCccEEEccCCCC---------------------cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 2 4566666666666654 3334444443 677777777777666655667777
Q ss_pred CCCcEEecccccCCcc--cchhh--hcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH
Q 004022 235 RSLVTLILLGCLNLEH--FPEIL--EKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY 310 (779)
Q Consensus 235 ~~L~~L~L~~~~~~~~--~p~~l--~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 310 (779)
++|++|++++|...+. ++..+ ..+++|++|++++|.++.++...
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------------------------------- 220 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC-------------------------------- 220 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH--------------------------------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH--------------------------------
Confidence 7777777777665543 22333 55556666666665555322100
Q ss_pred HHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc
Q 004022 311 ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 311 ~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
...+..+++|++|++++|.+.+..+...+..+++|+.|++++|.++.+|..+. ++|++|+|++|+++
T Consensus 221 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 221 -----------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp -----------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC
T ss_pred -----------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC
Confidence 00112334455555555555444332224456788888888888888887766 88999999999998
Q ss_pred cCChhccCCCCCCEEEcCCCCCCC
Q 004022 391 SLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 391 ~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
.+|. +..+++|++|++++|++.+
T Consensus 288 ~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 288 RNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CChh-HhhCCCCCEEeccCCCCCC
Confidence 8876 8888999998888887754
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-22 Score=212.32 Aligned_cols=224 Identities=17% Similarity=0.127 Sum_probs=151.6
Q ss_pred CccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 189 KVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
+|+.|++++|.+..++. .+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..++.+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56666666666677766 67888888888888888777667778888888888888887776555668888888888888
Q ss_pred CcCCCcCCc--cCCCCCCCCEEeccCCCCCCC-CCCCCCCchhHHH-HHhhcccCCcCCccccCccccCeeeccCCCCCC
Q 004022 268 RTPITELPS--SFENLPGLEVLFVEDCSKLDN-LPDNIGSLEYLYY-ILAAASAISQLPSSVALSNMLRSLDSSHCKGLE 343 (779)
Q Consensus 268 ~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 343 (779)
+|.++.+|. .+..+++|+.|++++|+..+. .+..+..+++|+. .+.++......|..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 888888876 578888888888888754333 3445666666655 444444334445666667777777777776543
Q ss_pred ccChhhccCCCCCcEEEecCCCCccCCcc----cCCCCCccEEEEecCCCc-----cCChhccCCCCCCEEEcCCCCCC
Q 004022 344 SFPRTFLLGLSAMGLLHISDYAVREIPQE----IAYLSSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 344 ~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~----l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
.+...+..+++|+.|++++|.++.++.. ....+.++.++++++.++ .+|..+..+++|+.|++++|.+.
T Consensus 213 -~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 213 -LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp -HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred -chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 3333344567777777777776663321 233456667777776655 35666677777777777776554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-24 Score=248.34 Aligned_cols=366 Identities=15% Similarity=0.100 Sum_probs=202.8
Q ss_pred hhhcccCCceEeeccCccccc--ccC----CC-Ccccccccccee---ecCCCCCCCCCCceEEEccCCCCCCCCC----
Q 004022 43 AFTNMSNLRLFKFYVPKFYEI--EKL----PS-MSTEEQLSYSKV---QLPNGLDYLPKKLRYLHWDTYPLRTLPS---- 108 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i--~~l----~~-l~~~~~~~~~~~---~l~~~l~~l~~~L~~L~l~~n~l~~lp~---- 108 (779)
.+..+++|+.|+|++|.+++. ..+ +. |..+........ .++.....+ ++|++|++++|.++....
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC-RKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHC-TTCSEEECTTCEEECCCSHHHH
T ss_pred HHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhC-CCCCEEECccccccCcchhHHH
Confidence 344889999999999987631 111 12 333333222211 111112244 488888888887654332
Q ss_pred -CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccc---
Q 004022 109 -NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIE--- 182 (779)
Q Consensus 109 -~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~--- 182 (779)
.. .+++|++|++++|.++.+..+. ++..+.++++|++|++++|.+.. +|. +.++++|++|+++++.....
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKD---LETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHH---HHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HHHhcCCCccEEEeeccCCCccCHHH---HHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHH
Confidence 12 6778888888888886331111 45556678888888888877443 443 44578888888875433211
Q ss_pred cC---CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc-cccCCCCCCcEEecccccCCcccchhhhcC
Q 004022 183 FP---QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCLNLEHFPEILEKM 258 (779)
Q Consensus 183 ~~---~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l 258 (779)
.+ ....+|+.|.+.++....+|..+..+++|++|++++|.+..... ..+..+++|++|+++++.....++.....+
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 11 22357788888887777777777788888888888887433322 335678888888888543334455556677
Q ss_pred ccCcEeecCC-----------cCCCc--CCccCCCCCCCCEEeccCCCCCCCCCCCCCC-chhHHH-HHh---hcccCCc
Q 004022 259 EHLKRIYSDR-----------TPITE--LPSSFENLPGLEVLFVEDCSKLDNLPDNIGS-LEYLYY-ILA---AASAISQ 320 (779)
Q Consensus 259 ~~L~~L~L~~-----------n~i~~--lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~-l~~L~~-~~~---~~~~~~~ 320 (779)
++|++|++++ +.++. ++.....+++|+.|+++.+.+.+..+..+.. +++|+. .+. .++.++.
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 8888888883 45542 2333445788888888655544322222111 222222 111 1222322
Q ss_pred CC------ccccCccccCeeeccCCC--CCCccChhhccCCCCCcEEEecCCCCcc--CCcccCCCCCccEEEEecCCCc
Q 004022 321 LP------SSVALSNMLRSLDSSHCK--GLESFPRTFLLGLSAMGLLHISDYAVRE--IPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 321 lp------~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
.| ..+..+++|+.|++++|. +...........+++|+.|++++|.+++ ++..+..+++|++|+|++|.++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 21 123345555555554433 2222111112235555555555555544 3333445555555555555544
Q ss_pred --cCChhccCCCCCCEEEcCCCCCC
Q 004022 391 --SLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 391 --~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
.++..+..+++|++|++++|++.
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCC
Confidence 13333444555555555555543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-22 Score=222.84 Aligned_cols=233 Identities=15% Similarity=0.069 Sum_probs=129.7
Q ss_pred CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEE
Q 004022 114 NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRL 193 (779)
Q Consensus 114 ~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L 193 (779)
+|++|+|++|.++.+ .|..|+.+++|++|+|++|.+....| +..+++|++|++++|... .++. ..+|+.|
T Consensus 35 ~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~~-~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPLSQI-------SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELLV-GPSIETL 104 (487)
T ss_dssp GCCEEECCSSCCCCC-------CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEEE-CTTCCEE
T ss_pred CccEEEeeCCcCCCC-------CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCCC-CCCcCEE
Confidence 444444444444442 33344455555555555554322222 444455555555544322 1111 1344444
Q ss_pred EecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhh-cCccCcEeecCCcCCC
Q 004022 194 YLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILE-KMEHLKRIYSDRTPIT 272 (779)
Q Consensus 194 ~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~L~~n~i~ 272 (779)
++++|.+..++.. .+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.++
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 4444444444432 345666666666666555555566666666666666666555555543 4566666666666655
Q ss_pred cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccC
Q 004022 273 ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLG 352 (779)
Q Consensus 273 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 352 (779)
.+|. ...+++|+.|+ +++|.+.+.++. +..
T Consensus 183 ~~~~-~~~l~~L~~L~-----------------------------------------------Ls~N~l~~~~~~--~~~ 212 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLD-----------------------------------------------LSSNKLAFMGPE--FQS 212 (487)
T ss_dssp EEEC-CCCCTTCCEEE-----------------------------------------------CCSSCCCEECGG--GGG
T ss_pred cccc-cccCCCCCEEE-----------------------------------------------CCCCCCCCCCHh--HcC
Confidence 5433 22344444444 444444433332 345
Q ss_pred CCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc--cCChhccCCCCCCEEEcC
Q 004022 353 LSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE--SLPAIIKQMSQLRFIHLE 408 (779)
Q Consensus 353 l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls 408 (779)
+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++.|+.++++
T Consensus 213 l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 67777777777777777777778888888888888877 667777788888777765
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-24 Score=245.79 Aligned_cols=375 Identities=14% Similarity=0.027 Sum_probs=236.2
Q ss_pred CCCCCceEEEccCCCC----CCCCCCC-------------CCCCCcEEECCCCCCCCccCCCCcccCccccC-C-CCCcE
Q 004022 88 YLPKKLRYLHWDTYPL----RTLPSNF-------------KPKNLVELNLRCSKVEQPWEGEKACVPSSIQN-F-KYLSA 148 (779)
Q Consensus 88 ~l~~~L~~L~l~~n~l----~~lp~~~-------------~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~-l-~~L~~ 148 (779)
.+ ++|++|++++++. ..+|..+ .+++|++|+|++|.++.. .+..+.. + .+|++
T Consensus 71 ~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~-------~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 71 RF-PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL-------DLDRLAKARADDLET 142 (592)
T ss_dssp HC-TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-------HHHHHHHHHGGGCCE
T ss_pred hC-CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHH-------HHHHHHHhccccCcE
Confidence 44 3799999988653 2333222 478899999998877642 3344444 3 34999
Q ss_pred EeccCCCCCC--CCCCC-CCCCCCcEEEecCCcCcc-------ccCCcCCCccEEEecCcCCc-----ccCcccCCCCCc
Q 004022 149 LSFKGCQSLR--SFPSN-LHFVCPVTINFSYCVNLI-------EFPQISGKVTRLYLGQSAIE-----EVPSSIECLTDL 213 (779)
Q Consensus 149 L~Ls~n~~l~--~~p~~-~~l~~L~~L~L~~~~~l~-------~~~~~~~~L~~L~L~~n~i~-----~lp~~l~~l~~L 213 (779)
|+|++|.... .++.+ .++++|++|++++|.... .++...++|+.|++++|.+. .++..+.++++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 9998886321 12222 257889999999887532 23445678888888888875 344455677888
Q ss_pred cEEeeeCCCCCcccccccCCCCCCcEEecccccCC---cccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEecc
Q 004022 214 EVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL---EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVE 290 (779)
Q Consensus 214 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~---~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~ 290 (779)
++|++++|...+ +|..+..+++|++|+++.+... ...+..+..+++|+.|+++++....+|..+..+++|++|+++
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEET
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecC
Confidence 888888877544 5666777888888888764333 233455667788888888887767777777788888888888
Q ss_pred CCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecC-------
Q 004022 291 DCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD------- 363 (779)
Q Consensus 291 ~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~------- 363 (779)
+|.+.... ++..+..+++|+.|+++++ +...........+++|++|++++
T Consensus 302 ~~~l~~~~----------------------~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 302 YALLETED----------------------HCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp TCCCCHHH----------------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred CCcCCHHH----------------------HHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 87632211 1122455677778777732 22221122234567788888873
Q ss_pred ----CCCcc--CCcccCCCCCccEEEEecCCCcc-CChhccC-CCCCCEEEcCC---CCCCCcCCC---------CCCCc
Q 004022 364 ----YAVRE--IPQEIAYLSSLEILYLSGNNFES-LPAIIKQ-MSQLRFIHLED---FNMLQSLPE---------LPLCL 423 (779)
Q Consensus 364 ----~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~Ls~---n~~~~~~~~---------~~~~L 423 (779)
+.+++ ++.....+++|++|+++.|+++. .+..+.. +++|+.|++++ ++..+..|. ..++|
T Consensus 359 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp SSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred ccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 34443 23333456788888887777762 2333433 77788888863 223333221 24678
Q ss_pred cEEEEecCCC-CC-----CCCCCCCCccEEEeeCCCCCCC-CC---CCCCCccEEeeecCcCCcc--cC---CCCCCccE
Q 004022 424 KYLHLIDCKM-LQ-----SLPVLPFCLESLDLTGCNMLRS-LP---ELPLCLQYLNLEDCNMLRS--LP---ELPLCLQL 488 (779)
Q Consensus 424 ~~L~l~~c~~-l~-----~lp~l~~~L~~L~ls~n~~l~~-l~---~~~~~L~~L~l~~c~~L~~--l~---~~~~sL~~ 488 (779)
++|+++.|.. +. .+.....+|++|++++|.+.+. ++ ...++|++|++++|+ +.. ++ ..+++|+.
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCe
Confidence 8888876653 11 1111123788888888876541 11 234788888888887 331 22 23578889
Q ss_pred EEEecCC
Q 004022 489 LTVRNCN 495 (779)
Q Consensus 489 L~i~~C~ 495 (779)
|++++|+
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 9999887
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-22 Score=213.82 Aligned_cols=245 Identities=15% Similarity=0.160 Sum_probs=170.4
Q ss_pred hhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCC--CCCCC--------C
Q 004022 42 RAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRT--LPSNF--------K 111 (779)
Q Consensus 42 ~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~--lp~~~--------~ 111 (779)
+.+..+++|+.|++++|.+ .+|..+. ..|++|++++|.++. +|..+ .
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--------------------~~p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 93 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--------------------ADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLG 93 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--------------------CCCHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHT
T ss_pred EEEccCCCceeEeeccccc--------------------ccHHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcC
Confidence 3567788899999998876 3343332 348888888888854 44433 4
Q ss_pred CCCCcEEECCCCCCCCccCCCCcccCccc--cCCCCCcEEeccCCCCCCCCCC-CCCC-----CCCcEEEecCCcCcccc
Q 004022 112 PKNLVELNLRCSKVEQPWEGEKACVPSSI--QNFKYLSALSFKGCQSLRSFPS-NLHF-----VCPVTINFSYCVNLIEF 183 (779)
Q Consensus 112 l~~L~~L~L~~n~i~~l~~g~~~~lp~~~--~~l~~L~~L~Ls~n~~l~~~p~-~~~l-----~~L~~L~L~~~~~l~~~ 183 (779)
+++|++|+|++|+++.. +|..+ ..+++|++|+|++|.+... |. +..+ ++|++|++++|..
T Consensus 94 l~~L~~L~L~~n~l~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l---- 161 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGT-------APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS---- 161 (312)
T ss_dssp TSCCCEEEEEEEBCBSC-------CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC----
T ss_pred cCCccEEEccCCcccch-------hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC----
Confidence 88999999999998854 67665 7899999999999986555 54 2233 6666666666654
Q ss_pred CCcCCCccEEEecCcCCcccC-cccCCCCCccEEeeeCCCCCcc--ccccc--CCCCCCcEEecccccCCc--ccc-hhh
Q 004022 184 PQISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKR--ISTSF--CKLRSLVTLILLGCLNLE--HFP-EIL 255 (779)
Q Consensus 184 ~~~~~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~--lp~~l--~~l~~L~~L~L~~~~~~~--~~p-~~l 255 (779)
..++ ..++.+++|++|++++|++.+. ++..+ ..+++|++|++++|.+.+ .++ ..+
T Consensus 162 -----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 162 -----------------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp -----------------CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred -----------------ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 4444 6788899999999999987665 33344 789999999999988763 222 445
Q ss_pred hcCccCcEeecCCcCCCcCC--ccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCe
Q 004022 256 EKMEHLKRIYSDRTPITELP--SSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRS 333 (779)
Q Consensus 256 ~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~ 333 (779)
..+++|++|++++|.++..+ ..+..+++|+.|++++|.+. .+|. .+.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-----------------------~~~------- 273 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK-----------------------GLP------- 273 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS-----------------------SCC-------
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh-----------------------hcc-------
Confidence 67789999999999888754 33555677777777776543 2222 111
Q ss_pred eeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc
Q 004022 334 LDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE 390 (779)
Q Consensus 334 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~ 390 (779)
++|+.|++++|.++++|. +..+++|++|++++|.++
T Consensus 274 --------------------~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 --------------------AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --------------------SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred --------------------CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 455666666666666655 666777777777777665
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=207.50 Aligned_cols=253 Identities=12% Similarity=-0.024 Sum_probs=196.6
Q ss_pred ecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC
Q 004022 30 DLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN 109 (779)
Q Consensus 30 d~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~ 109 (779)
|++......+....+..+++|+.|++++|.+++ ..|..+..+ ++|++|++++|.++.++..
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~------------------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~ 76 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ------------------ISAADLAPF-TKLELLNLSSNVLYETLDL 76 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC------------------CCHHHHTTC-TTCCEEECTTSCCEEEEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCc------------------CCHHHhhCC-CcCCEEECCCCcCCcchhh
Confidence 344444444555677788899999999998851 123456666 5999999999999877763
Q ss_pred CCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCc---
Q 004022 110 FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQI--- 186 (779)
Q Consensus 110 ~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~--- 186 (779)
..+++|++|++++|+++.+ + ..++|++|++++|.+....+ ..+++|++|++++|......+..
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l--------~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~ 142 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQEL--------L----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGC 142 (317)
T ss_dssp TTCTTCCEEECCSSEEEEE--------E----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGG
T ss_pred hhcCCCCEEECcCCccccc--------c----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhc
Confidence 3889999999999998863 2 44899999999998554333 23788999999999876654433
Q ss_pred CCCccEEEecCcCCcccC-ccc-CCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEe
Q 004022 187 SGKVTRLYLGQSAIEEVP-SSI-ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRI 264 (779)
Q Consensus 187 ~~~L~~L~L~~n~i~~lp-~~l-~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 264 (779)
+.+|+.|++++|.+..++ ..+ ..+++|++|++++|.+... +. ...+++|++|++++|.+.+ +|..+..+++|++|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEE
Confidence 467999999999998764 444 4789999999999986554 43 4459999999999988775 45558999999999
Q ss_pred ecCCcCCCcCCccCCCCCCCCEEeccCCCCC-CCCCCCCCCchhHHH-HHhhcccC
Q 004022 265 YSDRTPITELPSSFENLPGLEVLFVEDCSKL-DNLPDNIGSLEYLYY-ILAAASAI 318 (779)
Q Consensus 265 ~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~-~~~~~~~~ 318 (779)
++++|.++.+|..+..+++|+.|++++|++. +.+|..+..+++|+. .+.++..+
T Consensus 220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 9999999999999999999999999999987 667777778888888 55544433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-21 Score=218.00 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=164.3
Q ss_pred CCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVC 168 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~ 168 (779)
++|++|++++|.++.++. .| .+++|++|+|++|.++.. ++ ++.+++|++|+|++|.+. .+|. .++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~-l~~l~~L~~L~Ls~N~l~-~l~~---~~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--------LD-LESLSTLRTLDLNNNYVQ-ELLV---GPS 100 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE--------EE-CTTCTTCCEEECCSSEEE-EEEE---CTT
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC--------cc-cccCCCCCEEEecCCcCC-CCCC---CCC
Confidence 489999999999998874 45 899999999999999863 33 889999999999999843 3432 389
Q ss_pred CcEEEecCCcCccccCCcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccC-CCCCCcEEeccccc
Q 004022 169 PVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFC-KLRSLVTLILLGCL 246 (779)
Q Consensus 169 L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~ 246 (779)
|+.|++++|......+..+.+|+.|++++|.+..+ |..++.+++|++|++++|.+.+..|..+. .+++|++|+|++|.
T Consensus 101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999998887777889999999999999877 45788999999999999999888888776 79999999999998
Q ss_pred CCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCC
Q 004022 247 NLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 247 ~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 295 (779)
+.+. +. ...+++|++|++++|.++.+|..+..+++|+.|++++|.+.
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred cccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 7765 32 34689999999999999999988888999999999987654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-19 Score=184.91 Aligned_cols=206 Identities=23% Similarity=0.204 Sum_probs=163.4
Q ss_pred CccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 189 KVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
+|+.|++++|.+..++. .+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46666666666677765 78888999999999988776666678889999999999988888777888899999999999
Q ss_pred CcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccC
Q 004022 268 RTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP 346 (779)
Q Consensus 268 ~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~ 346 (779)
+|.++.++. .++.+++|++|++++|.+.+. .+|..+..+++|++|++++|.+.+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCcCCH
Confidence 999988776 588899999999998765431 135567778889999999998877544
Q ss_pred hhhccCCCCCc----EEEecCCCCccCCcccCCCCCccEEEEecCCCccCChh-ccCCCCCCEEEcCCCCCCCcCC
Q 004022 347 RTFLLGLSAMG----LLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAI-IKQMSQLRFIHLEDFNMLQSLP 417 (779)
Q Consensus 347 ~~~~~~l~~L~----~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~~~~~~~ 417 (779)
.. +..+++|+ .|++++|.+..++.......+|++|++++|.++.+|.. +..+++|+.|++++|++....+
T Consensus 167 ~~-~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 167 TD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GG-GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HH-hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 32 33444444 89999999999877766667899999999999988854 6889999999999998765443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-19 Score=184.03 Aligned_cols=183 Identities=17% Similarity=0.141 Sum_probs=118.0
Q ss_pred eecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCC
Q 004022 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSL 157 (779)
Q Consensus 80 ~~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l 157 (779)
..+|..+ |.+|++|++++|.++.++. .+ .+++|++|++++|+++.+ .+..|.++++|++|+|++|.+.
T Consensus 20 ~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 20 YKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-------EDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp SSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCC
T ss_pred cccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-------CHHHccCCcCCCEEECCCCccC
Confidence 4566544 4689999999999988876 45 889999999999998875 4557888999999999998865
Q ss_pred CCCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCc-ccccccCCC
Q 004022 158 RSFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLK-RISTSFCKL 234 (779)
Q Consensus 158 ~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~-~lp~~l~~l 234 (779)
...+. +.++++|++|++++|... .++. .++.+++|++|++++|.+.. .+|..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLA---------------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCC---------------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred ccChhhhcCCccccEEECCCCCcc---------------------ccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence 54443 566888888888877654 2222 35555556666665555443 235555555
Q ss_pred CCCcEEecccccCCcccchhhhcCccCc----EeecCCcCCCcCCccCCCCCCCCEEeccCCC
Q 004022 235 RSLVTLILLGCLNLEHFPEILEKMEHLK----RIYSDRTPITELPSSFENLPGLEVLFVEDCS 293 (779)
Q Consensus 235 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~----~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~ 293 (779)
++|++|++++|.+.+..+..+..+++|+ +|++++|.++.++.......+|+.|++++|.
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc
Confidence 5666666655555554444454444444 5555555555555444444455555555544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-19 Score=183.65 Aligned_cols=198 Identities=16% Similarity=0.166 Sum_probs=171.3
Q ss_pred CCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCC
Q 004022 87 DYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHF 166 (779)
Q Consensus 87 ~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l 166 (779)
..+ .+|++++++++.++.+|..+. +++++|+|++|.++.+ .+..|..+++|++|+|++|.+ +.++....+
T Consensus 7 ~~l-~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l 76 (290)
T 1p9a_G 7 SKV-ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTF-------SLATLMPYTRLTQLNLDRAEL-TKLQVDGTL 76 (290)
T ss_dssp ECS-TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEE-------EGGGGTTCTTCCEEECTTSCC-CEEECCSCC
T ss_pred ccc-CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCcc-------CHHHhhcCCCCCEEECCCCcc-CcccCCCCC
Confidence 344 489999999999999998764 7899999999999875 567889999999999999984 455656789
Q ss_pred CCCcEEEecCCcCccccCCc---CCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEec
Q 004022 167 VCPVTINFSYCVNLIEFPQI---SGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLIL 242 (779)
Q Consensus 167 ~~L~~L~L~~~~~l~~~~~~---~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 242 (779)
++|++|++++|... .+|.. +.+|+.|++++|.+..+|. .+..+++|++|++++|++....+..+..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 99999999999754 55543 4689999999999999884 6899999999999999987776667888999999999
Q ss_pred ccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCC
Q 004022 243 LGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 243 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 295 (779)
++|.+....+..+..+++|++|++++|.++.+|..+..+++|+.|++++|+..
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 99988876667788999999999999999999999999999999999998764
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-19 Score=182.96 Aligned_cols=197 Identities=17% Similarity=0.119 Sum_probs=147.2
Q ss_pred CccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCC
Q 004022 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 268 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 268 (779)
+++.++++++.+..+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+ . +.+++|++|++++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSH 86 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCS
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCC
Confidence 44555555555566766554 577778888777766666677777888888888776654332 2 6778888888888
Q ss_pred cCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 269 TPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 269 n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
|.++.+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+.
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~-----------------------~~~~~l~~L~~L~L~~N~l~~~~~~- 142 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPL-----------------------GALRGLGELQELYLKGNELKTLPPG- 142 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCS-----------------------STTTTCTTCCEEECTTSCCCCCCTT-
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCH-----------------------HHHcCCCCCCEEECCCCCCCccChh-
Confidence 8888888878888888888888876543322 3355677788888888887765443
Q ss_pred hccCCCCCcEEEecCCCCccCCcc-cCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCC
Q 004022 349 FLLGLSAMGLLHISDYAVREIPQE-IAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
.+..+++|+.|++++|.++.+|.. +..+++|+.|+|++|+++.+|..+..+++|+.|++++|++.
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 366788999999999999887765 57789999999999999999988888889999888888764
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=186.18 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=94.1
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
+|+.|++++|.++.++....+++|++|++++|.++. + ..+..+++|++|++++|.+....+. +.++++|+
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--------I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--------C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--------c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 455555555555444433344555555555555443 1 2344555555555555543322222 23455555
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccC-cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|++++|... .++ ..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 113 ~L~L~~n~l~---------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 113 ELVLVENQLQ---------------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp EEECTTSCCC---------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCcCC---------------------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 5555554432 222 223444555555555554443333334445555555555555444
Q ss_pred ccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccCCcCCccccC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAISQLPSSVAL 327 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~~~lp~~l~~ 327 (779)
..+..++.+++|++|++++|.++.++.. +..+++|+.|++++|++.+. ++.|+. ....+...+.+|..++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 4444445555555555555555554443 45555556666555544332 223444 33344444455555444
Q ss_pred c
Q 004022 328 S 328 (779)
Q Consensus 328 l 328 (779)
+
T Consensus 245 ~ 245 (272)
T 3rfs_A 245 V 245 (272)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=178.70 Aligned_cols=198 Identities=18% Similarity=0.245 Sum_probs=127.8
Q ss_pred ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 190 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
.+.++++++.++.+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555555566665443 45666666666655444445666666666666666655444445566667777777777
Q ss_pred CCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 270 PITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 270 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
.++.+|.. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~Ls~n~l~~~~~~- 151 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPP-----------------------RVFDSLTKLTYLSLGYNELQSLPKG- 151 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-----------------------TTTTTCTTCCEEECCSSCCCCCCTT-
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCH-----------------------HHhCcCcCCCEEECCCCcCCccCHh-
Confidence 76666543 5666777777776665433222 2234556667777777766554332
Q ss_pred hccCCCCCcEEEecCCCCccCCc-ccCCCCCccEEEEecCCCccCCh-hccCCCCCCEEEcCCCCCC
Q 004022 349 FLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~~ 413 (779)
.+..+++|+.|++++|.++.++. .+..+++|++|+|++|.++.+|. .+..+++|+.|++++|++.
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 25677888888888888877654 46778888888888888887774 4777888888888877654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=178.06 Aligned_cols=199 Identities=20% Similarity=0.208 Sum_probs=145.0
Q ss_pred CCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCC
Q 004022 49 NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVE 126 (779)
Q Consensus 49 ~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~ 126 (779)
+++.++++++.++ .+|..+ +.+|++|++++|.++.+|. .| .+++|++|+|++|.++
T Consensus 17 ~~~~l~~~~~~l~-------------------~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-------------------AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp TTTEEECTTSCCS-------------------SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS
T ss_pred CCCEEEccCCCCC-------------------ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC
Confidence 4667777777663 344433 3467777777777777765 34 6777777777777777
Q ss_pred CccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc
Q 004022 127 QPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS 205 (779)
Q Consensus 127 ~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~ 205 (779)
.+ .+..|..+++|++|++++|.+....+. +.++++|++|++++|.. ..++.
T Consensus 75 ~i-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------------~~~~~ 126 (270)
T 2o6q_A 75 TL-------PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL---------------------KSLPP 126 (270)
T ss_dssp CC-------CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCC---------------------CCCCT
T ss_pred ee-------ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCcc---------------------CeeCH
Confidence 64 233456677777777777764433222 34466666666666544 55544
Q ss_pred -ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCC
Q 004022 206 -SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPG 283 (779)
Q Consensus 206 -~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~ 283 (779)
.++.+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.+|.. +..+++
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 568899999999999987766555688899999999999988877777788999999999999999988875 888999
Q ss_pred CCEEeccCCCCCCC
Q 004022 284 LEVLFVEDCSKLDN 297 (779)
Q Consensus 284 L~~L~L~~~~~~~~ 297 (779)
|+.|++++|+....
T Consensus 207 L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 207 LKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCBCCS
T ss_pred CCEEEecCCCeeCC
Confidence 99999999876543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-22 Score=234.59 Aligned_cols=374 Identities=15% Similarity=0.092 Sum_probs=230.7
Q ss_pred CCceEEEccCCCC-CC---CCCC------------C-CCCCCcEEECCCCCCCCccCCCCcccCcccc-CCCCCcEEecc
Q 004022 91 KKLRYLHWDTYPL-RT---LPSN------------F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQ-NFKYLSALSFK 152 (779)
Q Consensus 91 ~~L~~L~l~~n~l-~~---lp~~------------~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~-~l~~L~~L~Ls 152 (779)
++|++|++++++. .. .|.. + .+++|++|+|+++.++.. .+..+. .+++|++|+|+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-------~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-------CLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-------HHHHHHHHCTTCCEEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-------HHHHHHHhCCCCcEEeCC
Confidence 4789999988762 22 2221 1 567899999999887643 334443 68899999999
Q ss_pred CCCCCCC--CCCCC-CCCCCcEEEecCCcCcc-------ccCCcCCCccEEEecCcC--C--cccCcccCCCCCccEEee
Q 004022 153 GCQSLRS--FPSNL-HFVCPVTINFSYCVNLI-------EFPQISGKVTRLYLGQSA--I--EEVPSSIECLTDLEVLDL 218 (779)
Q Consensus 153 ~n~~l~~--~p~~~-~l~~L~~L~L~~~~~l~-------~~~~~~~~L~~L~L~~n~--i--~~lp~~l~~l~~L~~L~L 218 (779)
+|...+. ++.+. ++++|++|++++|.... .++....+|+.|+++++. + ..++..+..+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 8853433 44433 58899999999887332 333455688888888876 2 122223345688889998
Q ss_pred eCCCCCcccccccCCCCCCcEEecccccC------CcccchhhhcCccCcEe-ecCCcCCCcCCccCCCCCCCCEEeccC
Q 004022 219 RGCKRLKRISTSFCKLRSLVTLILLGCLN------LEHFPEILEKMEHLKRI-YSDRTPITELPSSFENLPGLEVLFVED 291 (779)
Q Consensus 219 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~------~~~~p~~l~~l~~L~~L-~L~~n~i~~lp~~l~~l~~L~~L~L~~ 291 (779)
++|...+.++..+..+++|++|+++.+.. ...++..+.++++|+.| .+.+.....++..+..+++|++|++++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTT
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccC
Confidence 88865666777777788888888766542 12344567778888888 555544445665555678888888888
Q ss_pred CCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecC--------
Q 004022 292 CSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD-------- 363 (779)
Q Consensus 292 ~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~-------- 363 (779)
|.+.... ++..+..+++|++|++++| +...........+++|+.|++.+
T Consensus 299 ~~l~~~~----------------------l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 299 ATVQSYD----------------------LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp CCCCHHH----------------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred CCCCHHH----------------------HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 7632110 1112345677788888777 22111111123467788887743
Q ss_pred -CCCcc--CCcccCCCCCccEEEEecCCCccC-Chhc-cCCCCCCEEEcC-----CCCCCCcCCC---------CCCCcc
Q 004022 364 -YAVRE--IPQEIAYLSSLEILYLSGNNFESL-PAII-KQMSQLRFIHLE-----DFNMLQSLPE---------LPLCLK 424 (779)
Q Consensus 364 -~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l-~~l~~L~~L~Ls-----~n~~~~~~~~---------~~~~L~ 424 (779)
+.+++ +......+++|++|.+..|.++.. +..+ ..+++|+.|+++ +|...+..|. ..++|+
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 23332 111122367788887777777632 2223 357788888887 3344443221 236788
Q ss_pred EEEEecCCCCCC-----CCCCCCCccEEEeeCCCCCCCCC----CCCCCccEEeeecCcCCcc----cCCCCCCccEEEE
Q 004022 425 YLHLIDCKMLQS-----LPVLPFCLESLDLTGCNMLRSLP----ELPLCLQYLNLEDCNMLRS----LPELPLCLQLLTV 491 (779)
Q Consensus 425 ~L~l~~c~~l~~-----lp~l~~~L~~L~ls~n~~l~~l~----~~~~~L~~L~l~~c~~L~~----l~~~~~sL~~L~i 491 (779)
+|++++ .+.. +.....+|++|++++|.+.+... ..+++|++|++++|+.-.. +...+++|+.|++
T Consensus 436 ~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 436 RLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp EEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred EEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 888855 2221 11112378888888888644322 2247899999999875221 1123578999999
Q ss_pred ecCCC
Q 004022 492 RNCNR 496 (779)
Q Consensus 492 ~~C~~ 496 (779)
++|+.
T Consensus 514 ~~~~~ 518 (594)
T 2p1m_B 514 SSCSV 518 (594)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 99974
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-19 Score=177.61 Aligned_cols=203 Identities=14% Similarity=0.149 Sum_probs=118.1
Q ss_pred ccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCC-CCcccccccCCCCCCcEEeccc-ccCCcccchhhh
Q 004022 180 LIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCK-RLKRISTSFCKLRSLVTLILLG-CLNLEHFPEILE 256 (779)
Q Consensus 180 l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~-~~~~lp~~l~~l~~L~~L~L~~-~~~~~~~p~~l~ 256 (779)
++.+|....+++.|++++|.+..+|. .++.+++|++|++++|+ +....+..+.++++|++|++++ |.+....+..+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 44444433356666777777777776 67788888888888886 4444444677888888888887 565555556777
Q ss_pred cCccCcEeecCCcCCCcCCccCCCCCCCC---EEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccC-
Q 004022 257 KMEHLKRIYSDRTPITELPSSFENLPGLE---VLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLR- 332 (779)
Q Consensus 257 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~---~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~- 332 (779)
.+++|++|++++|.++.+|. +..+++|+ .|++++|.....+|. ..+..+++|+
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----------------------~~~~~l~~L~~ 159 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV----------------------NAFQGLCNETL 159 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT----------------------TTTTTTBSSEE
T ss_pred CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc----------------------ccccchhccee
Confidence 88888888888888887776 66677776 777777622222211 1233445555
Q ss_pred eeeccCCCCCCccChhhccCCCCCcEEEecCCC-CccCC-cccCCC-CCccEEEEecCCCccCChhccCCCCCCEEEcCC
Q 004022 333 SLDSSHCKGLESFPRTFLLGLSAMGLLHISDYA-VREIP-QEIAYL-SSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 409 (779)
Q Consensus 333 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~~p-~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 409 (779)
.|++++|.+.. ++...+.. ++|+.|++++|. ++.++ ..+..+ ++|+.|++++|+++.+|.. .+++|+.|++++
T Consensus 160 ~L~l~~n~l~~-i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 160 TLKLYNNGFTS-VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEECCSCCCCE-ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred EEEcCCCCCcc-cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 55555555542 22222222 445555555552 44432 234444 4555555555555544432 344444444443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-19 Score=185.14 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc--cc--hhhhcCccCcEeecCCcCCCcCCcc----CCC
Q 004022 209 CLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH--FP--EILEKMEHLKRIYSDRTPITELPSS----FEN 280 (779)
Q Consensus 209 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~p--~~l~~l~~L~~L~L~~n~i~~lp~~----l~~ 280 (779)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.++.++.. ++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 455555555555555444445555555555555555554331 11 1123455555555555555443331 233
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEE
Q 004022 281 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLH 360 (779)
Q Consensus 281 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 360 (779)
+++|++|++++|.+.+..|..+.. +..+++|++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~---------------------------------------------~~~~~~L~~L~ 257 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPR---------------------------------------------CMWSSALNSLN 257 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSS---------------------------------------------CCCCTTCCCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHh---------------------------------------------ccCcCcCCEEE
Confidence 444444444444443332221111 11235666666
Q ss_pred ecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCC
Q 004022 361 ISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 361 Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
+++|.++.+|..+. ++|++|+|++|+++.+|. +..+++|+.|++++|++..
T Consensus 258 Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 258 LSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 66666666666553 677777777777777665 5677778887777777643
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=184.88 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=127.5
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVT 171 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~ 171 (779)
++++.+++.++++|..+ ++++++|+|++|+|+.+ -+.+|.++++|++|+|++|++.+.+|. +.++++|++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i-------~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVI-------QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEE-------CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCc-------CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 57888999999999877 47899999999999984 234688999999999999997776664 456776665
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+...++ |.+..+ |..+..+++|++|++++|.+....+..+....++..|++.++.....
T Consensus 84 ~l~~~~--------------------N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 84 IRIEKA--------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EEEEEE--------------------TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred hhcccC--------------------CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 433332 223555 45678888999999998887665555566667788888877655554
Q ss_pred cc-hhhhcCc-cCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCC
Q 004022 251 FP-EILEKME-HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLP 299 (779)
Q Consensus 251 ~p-~~l~~l~-~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 299 (779)
++ ..+..+. .++.|++++|.++++|.......+|+.|++.+++..+.+|
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC
Confidence 44 3455543 5778888888888887776666677777776655544443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-18 Score=175.28 Aligned_cols=222 Identities=17% Similarity=0.129 Sum_probs=166.9
Q ss_pred CceEeeccCccccccc---CCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCC
Q 004022 50 LRLFKFYVPKFYEIEK---LPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVE 126 (779)
Q Consensus 50 Lr~L~l~~n~l~~i~~---l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~ 126 (779)
+..+++..+.++++.. ++.+..+.........+ .++..+ ++|++|++++|.++.++....+++|++|++++|.++
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~l~~l-~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYL-PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCC-TTGGGC-TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCcccc-cccccC-CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC
Confidence 3445566665554332 34444444443332333 356667 499999999999988875458899999999999998
Q ss_pred CccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc
Q 004022 127 QPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS 205 (779)
Q Consensus 127 ~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~ 205 (779)
.+ .+..|..+++|++|++++|.+....+. +.++++|++|++++|.. ..++.
T Consensus 99 ~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---------------------~~~~~ 150 (272)
T 3rfs_A 99 SL-------PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL---------------------QSLPK 150 (272)
T ss_dssp CC-------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---------------------CCCCT
T ss_pred cc-------ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc---------------------CccCH
Confidence 75 455678899999999999986544444 45688888888888754 44443
Q ss_pred -ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCC
Q 004022 206 -SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGL 284 (779)
Q Consensus 206 -~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L 284 (779)
.++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+++|
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l 224 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGI 224 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTT
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHH
Confidence 4678899999999999877766666788999999999999888877778889999999999999765 446788
Q ss_pred CEEeccCCCCCCCCCCCCCCchh
Q 004022 285 EVLFVEDCSKLDNLPDNIGSLEY 307 (779)
Q Consensus 285 ~~L~L~~~~~~~~lp~~l~~l~~ 307 (779)
+.|+++.|.+.+.+|.+++.+..
T Consensus 225 ~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHhCCCcccCcccccCC
Confidence 88999999999999988876654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=181.31 Aligned_cols=195 Identities=14% Similarity=0.209 Sum_probs=136.1
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRC 122 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~ 122 (779)
.++.+++|+.|++++|.++ .++ ++..+ ++|++|++++|.++.++....+++|++|+|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-------------------~l~-~~~~l-~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVT-------------------TIE-GVQYL-NNLIGLELKDNQITDLAPLKNLTKITELELSG 94 (308)
T ss_dssp CHHHHHTCCEEECTTSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCCSCCEEECCS
T ss_pred cHHHcCCcCEEEeeCCCcc-------------------Cch-hhhcc-CCCCEEEccCCcCCCChhHccCCCCCEEEccC
Confidence 3567888899999888774 344 45566 48899999999888888733888899999998
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcc
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 202 (779)
|.++. ++ .+..+++|++|++++|.+ +.++.+..+++|++|++++|.. ..
T Consensus 95 n~l~~--------~~-~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l---------------------~~ 143 (308)
T 1h6u_A 95 NPLKN--------VS-AIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQI---------------------TN 143 (308)
T ss_dssp CCCSC--------CG-GGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCC---------------------CC
T ss_pred CcCCC--------ch-hhcCCCCCCEEECCCCCC-CCchhhcCCCCCCEEECCCCcc---------------------Cc
Confidence 88876 32 577888888888888874 4566677778888888877754 33
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLP 282 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~ 282 (779)
++. ++.+++|++|++++|.+.. ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++. +..++
T Consensus 144 ~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~ 217 (308)
T 1h6u_A 144 ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTS 217 (308)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCT
T ss_pred Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCC
Confidence 333 5566667777777665443 333 6666777777777666544322 5666777777777777776663 66677
Q ss_pred CCCEEeccCCCCC
Q 004022 283 GLEVLFVEDCSKL 295 (779)
Q Consensus 283 ~L~~L~L~~~~~~ 295 (779)
+|+.|++++|++.
T Consensus 218 ~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 218 NLFIVTLTNQTIT 230 (308)
T ss_dssp TCCEEEEEEEEEE
T ss_pred CCCEEEccCCeee
Confidence 7777777776653
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-18 Score=178.32 Aligned_cols=195 Identities=17% Similarity=0.245 Sum_probs=159.2
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
++|++|++++|.++.+|....+++|++|+|++|.++. ++. +..+++|++|+|++|. ++.++.+..+++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~--------~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~ 110 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--------LAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIK 110 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC--------Chh-HccCCCCCEEEccCCc-CCCchhhcCCCCCC
Confidence 5899999999999999854489999999999999987 444 8899999999999998 45567777788888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|.. ..++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+.
T Consensus 111 ~L~l~~n~l---------------------~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 111 TLDLTSTQI---------------------TDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp EEECTTSCC---------------------CCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC
T ss_pred EEECCCCCC---------------------CCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC
Confidence 888887764 44553 88899999999999986654 43 88899999999999977654
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCcc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSS 324 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~ 324 (779)
+. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|+......+.+...|..
T Consensus 167 -~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 167 -TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEE
T ss_pred -hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCee
Confidence 33 8899999999999999999886 8899999999999998876543 78888888833344444555543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-21 Score=227.23 Aligned_cols=365 Identities=13% Similarity=0.107 Sum_probs=215.2
Q ss_pred hhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCC-CCCCCceEEEccCC-CCCC--CCCCC-CCCCCc
Q 004022 42 RAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLD-YLPKKLRYLHWDTY-PLRT--LPSNF-KPKNLV 116 (779)
Q Consensus 42 ~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~-~l~~~L~~L~l~~n-~l~~--lp~~~-~l~~L~ 116 (779)
..+..+++|+.|++++|.+++ ..+..+. .+ ++|++|++++| .++. ++..+ .+++|+
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~------------------~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 159 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTD------------------DCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCH------------------HHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred HHHHhCCCCCeEEeeCcEEcH------------------HHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCC
Confidence 345688999999999998752 1111121 24 48888888888 4443 44444 678888
Q ss_pred EEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCC-----C-CCCCCCCcEEEecCCcCccccCC---cC
Q 004022 117 ELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFP-----S-NLHFVCPVTINFSYCVNLIEFPQ---IS 187 (779)
Q Consensus 117 ~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p-----~-~~~l~~L~~L~L~~~~~l~~~~~---~~ 187 (779)
+|+|++|.++...... ++.....+++|++|++++|. ..+. . ...+++|+.|++++|.....++. ..
T Consensus 160 ~L~L~~~~i~~~~~~~---l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 160 ELDLRESDVDDVSGHW---LSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp EEECTTCEEECCCGGG---GGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred EEeCcCCccCCcchHH---HHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 8888888866531000 23333467788888888876 2222 1 12368888888888855444432 34
Q ss_pred CCccEEEecC-------cCCcccCcccCCCCCccEE-eeeCCCCCcccccccCCCCCCcEEecccccCCcc-cchhhhcC
Q 004022 188 GKVTRLYLGQ-------SAIEEVPSSIECLTDLEVL-DLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH-FPEILEKM 258 (779)
Q Consensus 188 ~~L~~L~L~~-------n~i~~lp~~l~~l~~L~~L-~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~-~p~~l~~l 258 (779)
.+|+.|++.. +.+..++..+.++++|+.| .+.+.. ...++..+..+++|++|++++|.+... +...+..+
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 5788887443 3345556666777777777 333322 233444444567777777777764332 23335567
Q ss_pred ccCcEeecCCcCCC--cCCccCCCCCCCCEEeccCCC--------CCCC-CCCCC-CCchhHHHHHhhcccCCc-CCccc
Q 004022 259 EHLKRIYSDRTPIT--ELPSSFENLPGLEVLFVEDCS--------KLDN-LPDNI-GSLEYLYYILAAASAISQ-LPSSV 325 (779)
Q Consensus 259 ~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~~~--------~~~~-lp~~l-~~l~~L~~~~~~~~~~~~-lp~~l 325 (779)
++|++|+++++ +. .++.....+++|+.|++.+|. ..+. ....+ ..+++|+.+...++.+.. .+..+
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l 392 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence 77777777776 33 122223346777777774431 1110 00000 011222221112222221 11222
Q ss_pred -cCccccCeeecc--C---CCCCCccC-h----hhccCCCCCcEEEecCCCCcc-CCcccC-CCCCccEEEEecCCCcc-
Q 004022 326 -ALSNMLRSLDSS--H---CKGLESFP-R----TFLLGLSAMGLLHISDYAVRE-IPQEIA-YLSSLEILYLSGNNFES- 391 (779)
Q Consensus 326 -~~l~~L~~L~l~--~---n~~~~~~~-~----~~~~~l~~L~~L~Ls~~~l~~-~p~~l~-~l~~L~~L~Ls~n~l~~- 391 (779)
..+++|+.|+++ + |...+..+ . ..+..+++|+.|++++ .+++ .+..+. .+++|+.|+|++|.++.
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence 257899999999 3 33333211 1 1145788999999987 5554 233333 37899999999999873
Q ss_pred -CChhccCCCCCCEEEcCCCCCCCcCC----CCCCCccEEEEecCCC
Q 004022 392 -LPAIIKQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLIDCKM 433 (779)
Q Consensus 392 -lp~~l~~l~~L~~L~Ls~n~~~~~~~----~~~~~L~~L~l~~c~~ 433 (779)
++.....+++|+.|++++|++..... ...++|++|++++|+.
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 22333679999999999999843222 2357899999999975
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-19 Score=190.50 Aligned_cols=232 Identities=16% Similarity=0.146 Sum_probs=119.9
Q ss_pred CCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCC
Q 004022 144 KYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR 223 (779)
Q Consensus 144 ~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~ 223 (779)
++++.|++++|.+....+....+++|++|++++|.... ..++..+..+++|++|++++|.+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~-------------------~~~~~~~~~~~~L~~L~L~~~~l 130 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV-------------------STLHGILSQCSKLQNLSLEGLRL 130 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH-------------------HHHHHHHTTBCCCSEEECTTCBC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCH-------------------HHHHHHHhhCCCCCEEeCcCccc
Confidence 55555555555544444444555556666665554321 11444555566666666666665
Q ss_pred CcccccccCCCCCCcEEeccccc-CCc-ccchhhhcCccCcEeecCCc-CCCc--CCccCCCCC-CCCEEeccCCC--CC
Q 004022 224 LKRISTSFCKLRSLVTLILLGCL-NLE-HFPEILEKMEHLKRIYSDRT-PITE--LPSSFENLP-GLEVLFVEDCS--KL 295 (779)
Q Consensus 224 ~~~lp~~l~~l~~L~~L~L~~~~-~~~-~~p~~l~~l~~L~~L~L~~n-~i~~--lp~~l~~l~-~L~~L~L~~~~--~~ 295 (779)
....+..+..+++|++|++++|. ..+ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|. +.
T Consensus 131 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 55555556666666666666663 222 24555666666666666666 5553 444455566 66666666652 11
Q ss_pred CCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCC-CCccChhhccCCCCCcEEEecCCC-Ccc-CCcc
Q 004022 296 DNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKG-LESFPRTFLLGLSAMGLLHISDYA-VRE-IPQE 372 (779)
Q Consensus 296 ~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~Ls~~~-l~~-~p~~ 372 (779)
. ..++..+..+++|+.|++++|.. ....+. .+..+++|+.|++++|. +.. ....
T Consensus 211 ~----------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 211 K----------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp H----------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred H----------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 0 11222334455666666666652 222222 23455666666666663 211 1123
Q ss_pred cCCCCCccEEEEecCCCccCChhccCC-CCCCEEEcCCCCCCCcCCCCC
Q 004022 373 IAYLSSLEILYLSGNNFESLPAIIKQM-SQLRFIHLEDFNMLQSLPELP 420 (779)
Q Consensus 373 l~~l~~L~~L~Ls~n~l~~lp~~l~~l-~~L~~L~Ls~n~~~~~~~~~~ 420 (779)
+..+++|++|++++| ++. ..+..+ .+|+.|++++|.+.+..|...
T Consensus 268 l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCcc
Confidence 555666667766666 221 112222 224444566666666555433
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=168.84 Aligned_cols=194 Identities=14% Similarity=0.158 Sum_probs=134.8
Q ss_pred CCceEeeccCcccccccCCCCccccccccceeecCC-CCCCCCCCceEEEccCCC-CCCCCCC-C-CCCCCcEEECCC-C
Q 004022 49 NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPN-GLDYLPKKLRYLHWDTYP-LRTLPSN-F-KPKNLVELNLRC-S 123 (779)
Q Consensus 49 ~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~n~-l~~lp~~-~-~l~~L~~L~L~~-n 123 (779)
+|+.|++++|.++ .++. .+..+ ++|++|++++|. ++.+|.. | .+++|++|++++ |
T Consensus 32 ~l~~L~l~~n~l~-------------------~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 32 STQTLKLIETHLR-------------------TIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp TCCEEEEESCCCS-------------------EECTTTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred cccEEEEeCCcce-------------------EECHHHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 6777777777664 3333 34445 477777777775 7777653 4 677777777776 7
Q ss_pred CCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc---EEEecCCcCccccCCcCCCccEEEecCcCC
Q 004022 124 KVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV---TINFSYCVNLIEFPQISGKVTRLYLGQSAI 200 (779)
Q Consensus 124 ~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~---~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i 200 (779)
+++.+ .+..|..+++|++|++++|.+ +.+|.+..+++|+ +|++++|. .+
T Consensus 92 ~l~~i-------~~~~f~~l~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~--------------------~l 143 (239)
T 2xwt_C 92 NLTYI-------DPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNP--------------------YM 143 (239)
T ss_dssp TCCEE-------CTTSEECCTTCCEEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCT--------------------TC
T ss_pred CeeEc-------CHHHhCCCCCCCEEeCCCCCC-ccccccccccccccccEEECCCCc--------------------ch
Confidence 77664 334566777777777777763 3356555555555 55555552 44
Q ss_pred cccCc-ccCCCCCcc-EEeeeCCCCCcccccccCCCCCCcEEeccccc-CCcccchhhhcC-ccCcEeecCCcCCCcCCc
Q 004022 201 EEVPS-SIECLTDLE-VLDLRGCKRLKRISTSFCKLRSLVTLILLGCL-NLEHFPEILEKM-EHLKRIYSDRTPITELPS 276 (779)
Q Consensus 201 ~~lp~-~l~~l~~L~-~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~-~~~~~p~~l~~l-~~L~~L~L~~n~i~~lp~ 276 (779)
..+|. .+..+++|+ +|++++|.+. .+|......++|++|++++|. +....+..+..+ ++|++|++++|.++.+|.
T Consensus 144 ~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp CEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred hhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 66665 477888999 9999988866 555543334889999999985 555556778888 999999999999999887
Q ss_pred cCCCCCCCCEEeccCCC
Q 004022 277 SFENLPGLEVLFVEDCS 293 (779)
Q Consensus 277 ~l~~l~~L~~L~L~~~~ 293 (779)
. .+++|+.|+++++.
T Consensus 223 ~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 223 K--GLEHLKELIARNTW 237 (239)
T ss_dssp T--TCTTCSEEECTTC-
T ss_pred h--HhccCceeeccCcc
Confidence 5 78899999988763
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-17 Score=166.08 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=143.4
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
..++++++++.++.+|..+. ++|+.|+|++|+++.+ .+..|.++++|++|+|++|.+....+. +.++++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATL-------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCcc-------CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 67889999999999998765 6899999999999886 566788999999999999986655544 55678888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccC-cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|++++|.. ..++ ..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.+.+
T Consensus 87 ~L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 87 TLGLANNQL---------------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp EEECTTSCC---------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCcc---------------------cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 888887765 3444 456778888999998888776655557888899999999888777
Q ss_pred ccchhhhcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDN 297 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~ 297 (779)
..+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|++...
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666678889999999999999998876 588899999999999876543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-19 Score=193.97 Aligned_cols=241 Identities=12% Similarity=0.038 Sum_probs=187.4
Q ss_pred ChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCC----CC------
Q 004022 40 DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP----SN------ 109 (779)
Q Consensus 40 ~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp----~~------ 109 (779)
-..++..+++|+.|+|++|.+++. ....++..+..+ ++|++|++++|.+..+. ..
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~--------------~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTE--------------AARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHH--------------HHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHH--------------HHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHH
Confidence 346788999999999999988521 112244556667 59999999998776543 22
Q ss_pred --CCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-----CCCC---------CCCcEEE
Q 004022 110 --FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-----NLHF---------VCPVTIN 173 (779)
Q Consensus 110 --~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-----~~~l---------~~L~~L~ 173 (779)
..+++|++|+|++|.++.. |.. .+|..+..+++|++|+|++|.+....+. +..+ ++|++|+
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~--~~~-~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPT--AQE-PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTT--THH-HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHhhCCcccEEECCCCcCCHH--HHH-HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 2679999999999999862 110 1677888999999999999986422221 1223 8999999
Q ss_pred ecCCcCc-cccC------CcCCCccEEEecCcCCc------ccCcccCCCCCccEEeeeCCCCC----cccccccCCCCC
Q 004022 174 FSYCVNL-IEFP------QISGKVTRLYLGQSAIE------EVPSSIECLTDLEVLDLRGCKRL----KRISTSFCKLRS 236 (779)
Q Consensus 174 L~~~~~l-~~~~------~~~~~L~~L~L~~n~i~------~lp~~l~~l~~L~~L~L~~~~~~----~~lp~~l~~l~~ 236 (779)
+++|... ..++ ....+|+.|++++|.+. .++..+..+++|++|+|++|.+. ..+|..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 9999876 3333 24568999999999997 34448889999999999999975 667888899999
Q ss_pred CcEEecccccCCcc----cchhhhc--CccCcEeecCCcCCCc-----CCccC-CCCCCCCEEeccCCCCCCCC
Q 004022 237 LVTLILLGCLNLEH----FPEILEK--MEHLKRIYSDRTPITE-----LPSSF-ENLPGLEVLFVEDCSKLDNL 298 (779)
Q Consensus 237 L~~L~L~~~~~~~~----~p~~l~~--l~~L~~L~L~~n~i~~-----lp~~l-~~l~~L~~L~L~~~~~~~~l 298 (779)
|++|+|++|.+... ++..+.. +++|++|++++|.++. +|..+ .++++|+.|++++|.+.+..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999999998765 5677744 8999999999999997 88877 67899999999999876543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-18 Score=178.28 Aligned_cols=199 Identities=16% Similarity=0.068 Sum_probs=147.2
Q ss_pred CCCccEEeeeCCCCCccccccc--CCCCCCcEEecccccCCcccc----hhhhcCccCcEeecCCcCCCcCC-ccCCCCC
Q 004022 210 LTDLEVLDLRGCKRLKRISTSF--CKLRSLVTLILLGCLNLEHFP----EILEKMEHLKRIYSDRTPITELP-SSFENLP 282 (779)
Q Consensus 210 l~~L~~L~L~~~~~~~~lp~~l--~~l~~L~~L~L~~~~~~~~~p----~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~ 282 (779)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++.++ ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568889998888888888777 788889999999888776544 33457889999999999998776 4588899
Q ss_pred CCCEEeccCCCCCCC--CCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccC--hhhccCCCCCcE
Q 004022 283 GLEVLFVEDCSKLDN--LPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP--RTFLLGLSAMGL 358 (779)
Q Consensus 283 ~L~~L~L~~~~~~~~--lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~ 358 (779)
+|++|++++|++.+. ++. +..+..+++|++|++++|.+..... ...+..+++|++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMA---------------------ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHT---------------------TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS
T ss_pred CCCEEECCCCCCccchhhhH---------------------HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCE
Confidence 999999999875431 110 1123567889999999998864322 112457899999
Q ss_pred EEecCCCCccC-CcccCCC---CCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCC-cCCCCCCCccEEEEecC
Q 004022 359 LHISDYAVREI-PQEIAYL---SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ-SLPELPLCLKYLHLIDC 431 (779)
Q Consensus 359 L~Ls~~~l~~~-p~~l~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~-~~~~~~~~L~~L~l~~c 431 (779)
|++++|.+.+. |..+..+ ++|++|+|++|+++.+|..+. ++|+.|++++|++.+ ..+..+++|+.|++++|
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 99999999885 7766665 699999999999999987664 789998888888765 22333344444444444
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=176.31 Aligned_cols=223 Identities=20% Similarity=0.219 Sum_probs=141.6
Q ss_pred EEEecCCcCccccCCcC-CCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCccccc-ccCCCCCCcEE-eccccc
Q 004022 171 TINFSYCVNLIEFPQIS-GKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTL-ILLGCL 246 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~-~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L-~L~~~~ 246 (779)
.++-+++ .++.+|..+ .+++.|+|++|.|+.+|. .|.++++|++|+|++|++.+.+|. .|.++++|+++ .+.+|.
T Consensus 13 ~v~C~~~-~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQES-KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEEST-TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCC-CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4444443 344666544 467777777777777775 467777777777777776665553 35666666553 333444
Q ss_pred CCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccc
Q 004022 247 NLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSV 325 (779)
Q Consensus 247 ~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l 325 (779)
+....|+.+..+++|++|++++|.++.+|.. +....++..|++.++.....++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-------------------------- 145 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-------------------------- 145 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC--------------------------
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc--------------------------
Confidence 4444456666666777777777666666543 3344445555554433222222
Q ss_pred cCccccCeeeccCCCCCCccChhhccCC-CCCcEEEecCCCCccCCcccCCCCCccEEEEec-CCCccCCh-hccCCCCC
Q 004022 326 ALSNMLRSLDSSHCKGLESFPRTFLLGL-SAMGLLHISDYAVREIPQEIAYLSSLEILYLSG-NNFESLPA-IIKQMSQL 402 (779)
Q Consensus 326 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L 402 (779)
...+.++ ..++.|++++|.++.++.......+|++|++++ |.++.+|. .++.+++|
T Consensus 146 ---------------------~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 146 ---------------------RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp ---------------------TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred ---------------------ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 1112233 356777888888887777666677888888874 67778874 56888888
Q ss_pred CEEEcCCCCCCCcCCCCCCCccEEEEecCCCCCCCCCCC
Q 004022 403 RFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLP 441 (779)
Q Consensus 403 ~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c~~l~~lp~l~ 441 (779)
+.|++++|++...-+..+.+|+.|.+.++..++.+|.+.
T Consensus 205 ~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp SEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTT
T ss_pred chhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCch
Confidence 888888887665444567788888888888888777543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-19 Score=196.35 Aligned_cols=191 Identities=16% Similarity=0.124 Sum_probs=112.9
Q ss_pred cCCCCCccEEeeeCCCCCc----ccccccCCCCCCcEEecccccCCcccc----hhhhcC---------ccCcEeecCCc
Q 004022 207 IECLTDLEVLDLRGCKRLK----RISTSFCKLRSLVTLILLGCLNLEHFP----EILEKM---------EHLKRIYSDRT 269 (779)
Q Consensus 207 l~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~~~~~p----~~l~~l---------~~L~~L~L~~n 269 (779)
+..+++|++|++++|.+.. .+|..+..+++|++|+|++|.+....+ ..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3556666666666666554 345555566666666666665543222 223333 66666666666
Q ss_pred CCC--cCC---ccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCC--
Q 004022 270 PIT--ELP---SSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGL-- 342 (779)
Q Consensus 270 ~i~--~lp---~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~-- 342 (779)
.++ .++ ..+..+++|+.|++++|.+... .... .++..+..+++|+.|++++|.+.
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---------g~~~---------l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---------GIEH---------LLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---------HHHH---------HHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---------HHHH---------HHHHHhhcCCCccEEECcCCCCCcH
Confidence 665 333 2345566666666666643210 0000 01123455666777777777653
Q ss_pred --CccChhhccCCCCCcEEEecCCCCcc-----CCccc--CCCCCccEEEEecCCCcc-----CChhc-cCCCCCCEEEc
Q 004022 343 --ESFPRTFLLGLSAMGLLHISDYAVRE-----IPQEI--AYLSSLEILYLSGNNFES-----LPAII-KQMSQLRFIHL 407 (779)
Q Consensus 343 --~~~~~~~~~~l~~L~~L~Ls~~~l~~-----~p~~l--~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L 407 (779)
..++. .+..+++|+.|+|++|.++. ++..+ +.+++|++|+|++|.++. +|..+ .++++|+.|++
T Consensus 232 g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 232 GSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 22232 24567777777777777765 34555 347888888888888886 77666 56788888888
Q ss_pred CCCCCCCcC
Q 004022 408 EDFNMLQSL 416 (779)
Q Consensus 408 s~n~~~~~~ 416 (779)
++|++.+..
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 888776544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=162.68 Aligned_cols=176 Identities=21% Similarity=0.258 Sum_probs=120.9
Q ss_pred ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 190 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
.+.++++++.+..+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4566666666777777665 57888888888877766667777888888888887777766667777777777777777
Q ss_pred CCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 270 PITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 270 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
.++.+|.. +..+++|+.|++++|.+.+.. + .
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------------------------------------~-~ 125 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLP-----------------------------------------------S-G 125 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------------------------------T-T
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcC-----------------------------------------------h-h
Confidence 77766643 566666666666665443211 1 1
Q ss_pred hccCCCCCcEEEecCCCCccCCc-ccCCCCCccEEEEecCCCccCCh-hccCCCCCCEEEcCCCCCCCc
Q 004022 349 FLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQS 415 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~~~~ 415 (779)
.+..+++|+.|++++|.++.++. .+..+++|++|+|++|+++.+|. .+..+++|+.|++++|++...
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 13455666666777776666554 46777777888888877776664 577777888877777766543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-19 Score=191.60 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=40.1
Q ss_pred CCCCcEEEecCCCCccCC-----cccCCCCCccEEEEecCCCcc--------CChhccCCCCCCEEEcCCCCCCCc
Q 004022 353 LSAMGLLHISDYAVREIP-----QEIAYLSSLEILYLSGNNFES--------LPAIIKQMSQLRFIHLEDFNMLQS 415 (779)
Q Consensus 353 l~~L~~L~Ls~~~l~~~p-----~~l~~l~~L~~L~Ls~n~l~~--------lp~~l~~l~~L~~L~Ls~n~~~~~ 415 (779)
.++|++|++++|.+++.+ ..+..+++|++|+|++|.+.. ++..+..+++|+.|++++|++...
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 346666666666666532 234666777888887776332 334466777788878877776544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=185.82 Aligned_cols=184 Identities=16% Similarity=0.210 Sum_probs=155.8
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
+|++|++++|.++.+|..+ +++|++|+|++|+|+. +| ..+++|++|+|++|.+.. +|.+.+ +|+.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~--------ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--------LP---ELPASLEYLDACDNRLST-LPELPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC--------CC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCE
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc--------cc---cccCCCCEEEccCCCCCC-cchhhc--CCCE
Confidence 8999999999999999876 3789999999999987 56 367999999999998554 777433 9999
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
|++++|.... +|..+.+|+.|++++|.+..+|. .+++|++|++++|.+.+ +|. +. ++|+.|+|++|.+. .+
T Consensus 125 L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 125 LDVDNNQLTM-LPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp EECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred EECCCCcCCC-CCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 9999997655 77777899999999999999987 57899999999998665 777 65 89999999999776 56
Q ss_pred chhhhcCccC-------cEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCC
Q 004022 252 PEILEKMEHL-------KRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNI 302 (779)
Q Consensus 252 p~~l~~l~~L-------~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l 302 (779)
|. +.. +| +.|++++|.++.+|..+..+++|+.|+|++|++.+..|..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 66 544 67 99999999999999998889999999999999887666543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-18 Score=186.04 Aligned_cols=200 Identities=16% Similarity=0.127 Sum_probs=135.2
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcc-cccccCCCCCCcEEecccccCCcccchhhhcCccCcEeec
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKR-ISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYS 266 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 266 (779)
.+++.|++++|.+...+..+..+++|++|++++|.+... ++..+..+++|++|++++|...+..+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 345555555555566666677788899999998886654 7777888889999999988877777888888888888888
Q ss_pred CCc-CCC--cCCccCCCCCCCCEEeccCC-CCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCcc-ccCeeeccCCC-
Q 004022 267 DRT-PIT--ELPSSFENLPGLEVLFVEDC-SKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN-MLRSLDSSHCK- 340 (779)
Q Consensus 267 ~~n-~i~--~lp~~l~~l~~L~~L~L~~~-~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~-~L~~L~l~~n~- 340 (779)
++| .++ .++..+..+++|++|++++| .+... .++..+..++ +|++|++++|.
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----------------------~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK----------------------HVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH----------------------HHHHHHHHSCTTCCEEECCSCGG
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH----------------------HHHHHHHhcccCCCEEEeCCCcc
Confidence 888 666 36666777888888888887 43211 1223345566 78888888774
Q ss_pred -CC-CccChhhccCCCCCcEEEecCCC-Ccc-CCcccCCCCCccEEEEecCC-Cc-cCChhccCCCCCCEEEcCCC
Q 004022 341 -GL-ESFPRTFLLGLSAMGLLHISDYA-VRE-IPQEIAYLSSLEILYLSGNN-FE-SLPAIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 341 -~~-~~~~~~~~~~l~~L~~L~Ls~~~-l~~-~p~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~Ls~n 410 (779)
+. ..++. .+..+++|+.|++++|. +++ .+..+..+++|++|++++|. +. .....+..+++|+.|++++|
T Consensus 208 ~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 208 NLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 33 11222 24467777777777777 443 55566677777777777774 22 11124666777777666666
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-18 Score=188.27 Aligned_cols=201 Identities=12% Similarity=0.150 Sum_probs=125.7
Q ss_pred CCCCCCCceEEEccCCCCCCCCC-----CC-CCC-CCcEEECCCCCCCCccCCCCcccCccccCC-----CCCcEEeccC
Q 004022 86 LDYLPKKLRYLHWDTYPLRTLPS-----NF-KPK-NLVELNLRCSKVEQPWEGEKACVPSSIQNF-----KYLSALSFKG 153 (779)
Q Consensus 86 l~~l~~~L~~L~l~~n~l~~lp~-----~~-~l~-~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l-----~~L~~L~Ls~ 153 (779)
+...+++|++|++++|.++..+. .+ .++ +|++|+|++|.++.. .+..+..+ ++|++|+|++
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-------NSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-------CHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-------HHHHHHHHHhccCCCccEEECcC
Confidence 34444679999999999988874 34 666 899999999998864 34445443 8899999999
Q ss_pred CCCCCCCCC-----CCCC-CCCcEEEecCCcCccccCCc--------CCCccEEEecCcCCc-----ccCcccCCCC-Cc
Q 004022 154 CQSLRSFPS-----NLHF-VCPVTINFSYCVNLIEFPQI--------SGKVTRLYLGQSAIE-----EVPSSIECLT-DL 213 (779)
Q Consensus 154 n~~l~~~p~-----~~~l-~~L~~L~L~~~~~l~~~~~~--------~~~L~~L~L~~n~i~-----~lp~~l~~l~-~L 213 (779)
|.+....+. +..+ ++|++|++++|......+.. ..+|++|++++|.++ .++..+..++ +|
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 986544443 2334 78888888888764432211 236777777777665 3344444444 67
Q ss_pred cEEeeeCCCCCcccccc----cCCC-CCCcEEecccccCCcc----cchhhhc-CccCcEeecCCcCCCcCCc-----cC
Q 004022 214 EVLDLRGCKRLKRISTS----FCKL-RSLVTLILLGCLNLEH----FPEILEK-MEHLKRIYSDRTPITELPS-----SF 278 (779)
Q Consensus 214 ~~L~L~~~~~~~~lp~~----l~~l-~~L~~L~L~~~~~~~~----~p~~l~~-l~~L~~L~L~~n~i~~lp~-----~l 278 (779)
++|++++|.+....+.. +..+ ++|++|+|++|.+... ++..+.. .++|++|++++|.++..+. .+
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 77777776654443322 2233 4677777776665442 3444444 3466677776666664432 24
Q ss_pred CCCCCCCEEeccCCC
Q 004022 279 ENLPGLEVLFVEDCS 293 (779)
Q Consensus 279 ~~l~~L~~L~L~~~~ 293 (779)
..+++|+.|++++|.
T Consensus 250 ~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 250 DSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTTCSEEEEEHHH
T ss_pred hcCCCccEEEeccCC
Confidence 556666666666654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=176.67 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=159.5
Q ss_pred hhhhccc-----CCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCc
Q 004022 42 RAFTNMS-----NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLV 116 (779)
Q Consensus 42 ~~f~~l~-----~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~ 116 (779)
.+|.+++ +|+.|++++|.++ .+|..+. ++|++|++++|.++.+| -.+++|+
T Consensus 48 ~~~~~l~~C~~~~L~~L~Ls~n~L~-------------------~lp~~l~---~~L~~L~Ls~N~l~~ip--~~l~~L~ 103 (571)
T 3cvr_A 48 EAVSLLKECLINQFSELQLNRLNLS-------------------SLPDNLP---PQITVLEITQNALISLP--ELPASLE 103 (571)
T ss_dssp HHHHHHHHHHHTTCSEEECCSSCCS-------------------CCCSCCC---TTCSEEECCSSCCSCCC--CCCTTCC
T ss_pred chhhhccccccCCccEEEeCCCCCC-------------------ccCHhHc---CCCCEEECcCCCCcccc--cccCCCC
Confidence 3677776 9999999999884 3666553 58999999999999999 4578999
Q ss_pred EEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEec
Q 004022 117 ELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLG 196 (779)
Q Consensus 117 ~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~ 196 (779)
+|+|++|+|+. +|. +.. +|++|+|++|.+. .+|. .+++|+.|++++|... .+|..+.+|+.|+++
T Consensus 104 ~L~Ls~N~l~~--------ip~-l~~--~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls 168 (571)
T 3cvr_A 104 YLDACDNRLST--------LPE-LPA--SLKHLDVDNNQLT-MLPE--LPALLEYINADNNQLT-MLPELPTSLEVLSVR 168 (571)
T ss_dssp EEECCSSCCSC--------CCC-CCT--TCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECC
T ss_pred EEEccCCCCCC--------cch-hhc--CCCEEECCCCcCC-CCCC--cCccccEEeCCCCccC-cCCCcCCCcCEEECC
Confidence 99999999987 566 555 9999999999854 4777 7899999999999865 477777899999999
Q ss_pred CcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCC-------cEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 197 QSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSL-------VTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 197 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L-------~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
+|.+..+|. +. ++|+.|++++|.+. .+|. +.. +| +.|+|++|.+. .+|..+..+++|+.|++++|
T Consensus 169 ~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 169 NNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 999999998 66 89999999999865 6776 654 77 99999998776 57888888999999999999
Q ss_pred CCC-cCCccCCC
Q 004022 270 PIT-ELPSSFEN 280 (779)
Q Consensus 270 ~i~-~lp~~l~~ 280 (779)
.++ .+|..+..
T Consensus 241 ~l~~~~p~~l~~ 252 (571)
T 3cvr_A 241 PLSSRIRESLSQ 252 (571)
T ss_dssp SCCHHHHHHHHH
T ss_pred cCCCcCHHHHHH
Confidence 998 44554444
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=162.14 Aligned_cols=169 Identities=19% Similarity=0.226 Sum_probs=133.3
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
++|++|++++|.++.++....+++|++|+|++|+++. ++. +..+++|++|++++|. ++.++.+..+++|+
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~--------~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~ 115 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--------IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLK 115 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC--------Ccc-cccCCCCCEEECCCCc-CCCChhhccCCCCC
Confidence 5899999999999999864489999999999999987 344 8899999999999998 45577777788888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|.. ..+ +.+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+.
T Consensus 116 ~L~L~~n~i---------------------~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 116 SLSLEHNGI---------------------SDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp EEECTTSCC---------------------CCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred EEECCCCcC---------------------CCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 888888765 333 3566778888888888776554 3477788888888888776654
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCC
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~ 296 (779)
.+ +..+++|+.|++++|.++.++. +..+++|+.|++++|++..
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred hh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 44 7788888888888888888765 7888888888888876543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.4e-16 Score=152.22 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=82.0
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTI 172 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L 172 (779)
+.++.+++.++.+|..+ +++|++|++++|+++.+ .+..|..+++|++|++++|++....+. +.++++|++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSL-------PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcC-------ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence 45566666666666544 34677777777776653 333456666777777766654322222 2334455555
Q ss_pred EecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 173 NFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 173 ~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
++++|.. ..++. .++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 82 ~Ls~n~l---------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 82 NLSTNQL---------------------QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp ECCSSCC---------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ECCCCcC---------------------CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 5544432 22222 2344455555555554443333333444444444444444433333
Q ss_pred chhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCC
Q 004022 252 PEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 301 (779)
+..+..+++|++|++++|.+. +.+++|+.|+++.|.+.+.+|..
T Consensus 141 ~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 141 DGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred HHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeecc
Confidence 333444444444444444322 22334444444444444444433
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-16 Score=161.22 Aligned_cols=177 Identities=17% Similarity=0.183 Sum_probs=139.0
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRC 122 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~ 122 (779)
.++.+++|+.|++++|.++ .++ ++..+ ++|++|++++|.++.++....+++|++|++++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~-------------------~~~-~~~~l-~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIK-------------------SVQ-GIQYL-PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDE 99 (291)
T ss_dssp CHHHHHTCCEEECTTSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred chhhcCcccEEEccCCCcc-------------------cCh-hHhcC-CCCCEEEccCCccCCCcccccCCCCCEEECCC
Confidence 4568999999999999884 333 46666 59999999999999998844999999999999
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcc
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 202 (779)
|.++. +| .+..+++|++|++++|.+ +.++.+..+++|+.|++++|.. ..
T Consensus 100 n~l~~--------~~-~l~~l~~L~~L~L~~n~i-~~~~~l~~l~~L~~L~l~~n~l---------------------~~ 148 (291)
T 1h6t_A 100 NKVKD--------LS-SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKI---------------------TD 148 (291)
T ss_dssp SCCCC--------GG-GGTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSCC---------------------CC
T ss_pred CcCCC--------Ch-hhccCCCCCEEECCCCcC-CCChhhcCCCCCCEEEccCCcC---------------------Cc
Confidence 99986 33 488999999999999984 4567777788888888888765 33
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCc
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS 276 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~ 276 (779)
+ ..++.+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|+.|++++|.++..|.
T Consensus 149 ~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 149 I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred c-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 3 456777888888888887655433 7778888888888876654 34 37788888888888888876554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-16 Score=150.70 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=60.7
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLP 282 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~ 282 (779)
.+..++.+++|++|++++|.+....+..+..+++|++|++++|...+.+| .+..+++|++|++++|.++.++ .+..++
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~ 181 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFP 181 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCS
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCC
Confidence 44555666667777777766665556666667777777777766445555 4677777777777777777766 567777
Q ss_pred CCCEEeccCCCC
Q 004022 283 GLEVLFVEDCSK 294 (779)
Q Consensus 283 ~L~~L~L~~~~~ 294 (779)
+|+.|++++|++
T Consensus 182 ~L~~L~l~~N~i 193 (197)
T 4ezg_A 182 KLNQLYAFSQTI 193 (197)
T ss_dssp SCCEEEECBC--
T ss_pred CCCEEEeeCccc
Confidence 888888877764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=146.62 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=113.1
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+|.++ +.+|++|++++|.++.+|.. + .+++|++|++++|+++.+ .+..|..+++|++|++++|.+..
T Consensus 21 ~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 21 SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-------PNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-------ChhhcCCCCCcCEEECCCCcCCc
Confidence 556544 36899999999999999875 4 899999999999999875 44567899999999999998654
Q ss_pred CCCC-CCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCC
Q 004022 159 SFPS-NLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRS 236 (779)
Q Consensus 159 ~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 236 (779)
..+. +.++++|++|++++|... .++. .+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~---------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQ---------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC---------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cCHhHhcCccCCCEEEcCCCcCc---------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 4333 457888998888888654 3332 3455666666666666555444444555666
Q ss_pred CcEEecccccCCcccchhhhcCccCcEeecCCcCCC-cCCccCCCCCC
Q 004022 237 LVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPG 283 (779)
Q Consensus 237 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~ 283 (779)
|++|++++|.... .+++|+.|+++.|.++ .+|.+++.++.
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 6666666654432 3345666666666655 55555554443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=171.20 Aligned_cols=169 Identities=19% Similarity=0.213 Sum_probs=132.3
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.+|++|++++|.+..+|....+++|+.|+|++|.|+.+ +. +..+++|+.|+|++|. +..+|.+..+++|+
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~--------~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~ 112 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--------KP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLK 112 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC--------GG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC--------hh-hccCCCCCEEECcCCC-CCCChhhccCCCCC
Confidence 58999999999999998655899999999999999873 43 8899999999999998 45677777888888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|+|++|... .+ +.+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+.+.
T Consensus 113 ~L~Ls~N~l~---------------------~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 113 SLSLEHNGIS---------------------DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp EEECTTSCCC---------------------CC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred EEEecCCCCC---------------------CC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 8888888653 33 2466777888888888776554 3477788888888888776665
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCC
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~ 296 (779)
.| +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|++..
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred hh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 55 777888888888888888774 47778888888888876654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=172.12 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=136.9
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRC 122 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~ 122 (779)
.+..+++|+.|++++|.++ .++ .+..+ ++|++|++++|.++.++....+++|+.|+|++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~-------------------~l~-~l~~l-~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIK-------------------SVQ-GIQYL-PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCC-------------------CCT-TGGGC-TTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred chhcCCCCCEEECcCCCCC-------------------CCh-HHccC-CCCCEEEeeCCCCCCChhhccCCCCCEEECcC
Confidence 3678899999999999884 333 46667 59999999999999998844999999999999
Q ss_pred CCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcc
Q 004022 123 SKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEE 202 (779)
Q Consensus 123 n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 202 (779)
|.++. +| .+..+++|+.|+|++|.+ ..++.+..+++|+.|+|++|... .
T Consensus 97 N~l~~--------l~-~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~---------------------~ 145 (605)
T 1m9s_A 97 NKIKD--------LS-SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKIT---------------------D 145 (605)
T ss_dssp SCCCC--------CT-TSTTCTTCCEEECTTSCC-CCCGGGGGCTTCSEEECCSSCCC---------------------C
T ss_pred CCCCC--------Ch-hhccCCCCCEEEecCCCC-CCCccccCCCccCEEECCCCccC---------------------C
Confidence 99986 33 688999999999999984 45677788889999998888653 3
Q ss_pred cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCc
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS 276 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~ 276 (779)
+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+...|.
T Consensus 146 l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 146 I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 3 456667777777777777655444 67777777777777766542 346777777788887777776553
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=143.77 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=92.1
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTIN 173 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~ 173 (779)
+.++++++.++.+|..+. ++|++|+|++|+|+.+ .+..|..+++|++|+|++|.+....|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i-------~~~~~~~l~~L~~L~Ls~N~i~~~~~------------ 73 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVI-------PPGAFSPYKKLRRIDLSNNQISELAP------------ 73 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEE-------CTTSSTTCTTCCEEECCSSCCCEECT------------
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCc-------CHhHhhCCCCCCEEECCCCcCCCcCH------------
Confidence 567888888888887654 6788888888888764 34467777777777777776433222
Q ss_pred ecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccch
Q 004022 174 FSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPE 253 (779)
Q Consensus 174 L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~ 253 (779)
..+..+++|++|+|++|.+....+..|.++++|++|+|++|.+.+..|.
T Consensus 74 -------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 74 -------------------------------DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp -------------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -------------------------------HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence 3334444444444444443333223344455555555555555555555
Q ss_pred hhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 254 ILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 254 ~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
.+..+++|++|++++|.++.++.. +..+++|+.|++++|++.
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555666666666666666666543 666677777777776543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=144.01 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=96.5
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccC-ccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVP-SSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp-~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
-+++++++|.++.+|..+ ...+++|+|++|+|+.+ .| ..|..+++|++|+|++|.+....+
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~-------~~~~~~~~l~~L~~L~L~~N~i~~i~~---------- 74 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVL-------EATGIFKKLPQLRKINFSNNKITDIEE---------- 74 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEE-------CCCCCGGGCTTCCEEECCSSCCCEECT----------
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCcc-------CchhhhccCCCCCEEECCCCcCCEECH----------
Confidence 357888888888888765 34567888888888763 22 236677777777777776332222
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCccc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 251 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 251 (779)
..+..+++|++|++++|.+.+..+..+.++++|++|+|++|.+.+..
T Consensus 75 ---------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 75 ---------------------------------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp ---------------------------------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred ---------------------------------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 23445555555555555555444445555666666666666665555
Q ss_pred chhhhcCccCcEeecCCcCCCcC-CccCCCCCCCCEEeccCCCCCC
Q 004022 252 PEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~ 296 (779)
|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|++..
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66666666666666666666665 4456677777777777766543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=142.56 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=120.1
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC-CCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS-FPSNLHFVCP 169 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~-~p~~~~l~~L 169 (779)
.+|++|++++|.++.+|....+++|++|++++|.++. ++.+..+++|++|++++|.+... .+.+.++++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~---------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN---------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC---------CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc---------chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4899999999999999943388999999999998764 34678899999999999986653 4446678888
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
++|++++|... ...+..++.+++|++|++++|...+.+| .+..+++|++|++++|.+.+
T Consensus 115 ~~L~Ls~n~i~--------------------~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 115 TLLDISHSAHD--------------------DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CEEECCSSBCB--------------------GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred CEEEecCCccC--------------------cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 88888888764 3456678889999999999988666666 48889999999999987765
Q ss_pred ccchhhhcCccCcEeecCCcCCCc
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITE 273 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~ 273 (779)
++ .+..+++|++|++++|.+..
T Consensus 174 -~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 -YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -CT-TGGGCSSCCEEEECBC----
T ss_pred -hH-HhccCCCCCEEEeeCcccCC
Confidence 44 68889999999999998753
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=157.38 Aligned_cols=174 Identities=16% Similarity=0.122 Sum_probs=128.1
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCcccc-CCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQ-NFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~-~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
-++++++++.++.+|..+ ...++.|+|++|+|+.+ .+..+. .+++|++|+|++|++....+. +.++++|+
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l-------~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRL-------RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEE-------CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCcc-------ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 368899999999999765 34689999999999885 444565 889999999999885544433 56677777
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|+|++|.. ..++. .+..+++|++|+|++|.+....|..|.++++|++|+|++|.+..
T Consensus 92 ~L~Ls~N~l---------------------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 92 YLDLSSNHL---------------------HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp EEECCSSCC---------------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEECCCCcC---------------------CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 777777764 44443 56778888888888888777667778888888888888877665
Q ss_pred ccchhh---hcCccCcEeecCCcCCCcCCc-cCCCCCC--CCEEeccCCCCC
Q 004022 250 HFPEIL---EKMEHLKRIYSDRTPITELPS-SFENLPG--LEVLFVEDCSKL 295 (779)
Q Consensus 250 ~~p~~l---~~l~~L~~L~L~~n~i~~lp~-~l~~l~~--L~~L~L~~~~~~ 295 (779)
..+..+ ..+++|+.|++++|.++.+|. .+..++. ++.|++++|++.
T Consensus 151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 444444 568888888888888888875 3666665 477888887653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=156.37 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=109.5
Q ss_pred cEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccC-CCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFC-KLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 191 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
+.++++++.+..+|..+. ..++.|+|++|.+.+..+..+. ++++|++|+|++|.+.+..+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 355556666666766554 3467777777766555555555 6777777777777666655666677777777777777
Q ss_pred CCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 270 PITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 270 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
.++.++.. +..+++|+.|+|++|.+....|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------------------------------ 130 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN------------------------------------------------ 130 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTT------------------------------------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHH------------------------------------------------
Confidence 77666543 56666666666666544332211
Q ss_pred hccCCCCCcEEEecCCCCccCCccc----CCCCCccEEEEecCCCccCC-hhccCCCC--CCEEEcCCCCC
Q 004022 349 FLLGLSAMGLLHISDYAVREIPQEI----AYLSSLEILYLSGNNFESLP-AIIKQMSQ--LRFIHLEDFNM 412 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p~~l----~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~--L~~L~Ls~n~~ 412 (779)
.+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+++.+| ..+..++. |+.|++++|++
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 1345566666666666666666543 46788888888888888877 45667776 37777777764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=141.74 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=41.7
Q ss_pred CCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCCCCCCC
Q 004022 352 GLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFNMLQ 414 (779)
Q Consensus 352 ~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~ 414 (779)
.+++|+.|++++|.++.+|..+..+++|+.|+|++|+++.+| ..+..+++|+.|++++|++..
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 445555555666666666666666777777777777777666 346677777777777776554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-14 Score=140.34 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=92.6
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCC
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCP 169 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L 169 (779)
..+.++.+++.++.+|..+. ++|++|+|++|+|+.+ .|..|..+++|++|+|++|.+ +.+|. +.++++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKL-------EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQL 90 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred eCCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCcc-------CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCc
Confidence 46678888888988887654 7888999999988875 567788888888888888874 33332 2334444
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+.|++++| .+....+..+..+++|++|++++|.+.
T Consensus 91 ~~L~Ls~N--------------------------------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~- 125 (229)
T 3e6j_A 91 TVLDLGTN--------------------------------------------QLTVLPSAVFDRLVHLKELFMCCNKLT- 125 (229)
T ss_dssp CEEECCSS--------------------------------------------CCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CEEECCCC--------------------------------------------cCCccChhHhCcchhhCeEeccCCccc-
Confidence 44444444 333322333344444444444444433
Q ss_pred ccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCC
Q 004022 250 HFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 250 ~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 295 (779)
.+|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|++.
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 3444455555666666666666655543 566666666666666544
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.4e-15 Score=151.40 Aligned_cols=165 Identities=18% Similarity=0.154 Sum_probs=81.9
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
++..++++++.++.++....+++|++|++++|.++. +| .+..+++|++|+|++|.+ +.++.+.++++|+.
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--------l~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~ 89 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--------LA-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEE 89 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--------CT-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCE
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--------ch-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCE
Confidence 555666666666666632266677777777776665 33 455667777777777663 33344556666666
Q ss_pred EEecCCcCccccCCc-CCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 172 INFSYCVNLIEFPQI-SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 172 L~L~~~~~l~~~~~~-~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
|++++|.... ++.. ..+|+.|++++|.+..++ .++.+++|+.|++++|++.+ ++ .+..+++|++|++++|.+.+.
T Consensus 90 L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCC-cCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 6666665422 1100 023333333333334433 34444455555555444322 22 244444444444444433332
Q ss_pred cchhhhcCccCcEeecCCcCCC
Q 004022 251 FPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
..+..+++|+.|++++|.+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 23334444444444444443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=149.12 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=75.8
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
+|++|++++|.++.+|....+++|++|+|++|+|+. ++. +..+++|++|+|++|+ ++.+|.+.. ++|+.
T Consensus 42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~--------~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~ 110 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--------LSP-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSR 110 (263)
T ss_dssp TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCE
T ss_pred cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC--------Chh-hccCCCCCEEECCCCc-cCCcCcccc-CcccE
Confidence 444444444444444421144444444444444443 122 3444444444444444 222333222 44444
Q ss_pred EEecCCcCccccC--CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 172 INFSYCVNLIEFP--QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 172 L~L~~~~~l~~~~--~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
|++++|.... ++ ..+.+|+.|++++|.+..++ .++.+++|++|++++|.+.+. ..+..+++|+.|++++|....
T Consensus 111 L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 111 LFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred EEccCCccCC-ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 4444443322 11 12234555555555556665 677788888888888886655 457788888888888887654
Q ss_pred c
Q 004022 250 H 250 (779)
Q Consensus 250 ~ 250 (779)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=140.22 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=100.3
Q ss_pred ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCCCCCC
Q 004022 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFENLPGL 284 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L 284 (779)
.+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 467889999999999998777777899999999999999999888888899999999999999999988 5669999999
Q ss_pred CEEeccCCCCCCCCCCCCCCchhHHH-HHhhcccC
Q 004022 285 EVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAASAI 318 (779)
Q Consensus 285 ~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~~~ 318 (779)
+.|+|++|.+.+..|..+..+++|+. .+.++...
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999999999888999999999888 55555443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=138.38 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=100.5
Q ss_pred cccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCC-ccC
Q 004022 201 EEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELP-SSF 278 (779)
Q Consensus 201 ~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp-~~l 278 (779)
..++. .+..+++|++|++++|.+.+..|..|.++++|++|+|++|.+....+..+..+++|++|++++|.++.++ ..+
T Consensus 45 ~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 45 KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc
Confidence 55554 6788999999999999988888889999999999999999988766777899999999999999999885 569
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-HHhhcc
Q 004022 279 ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-ILAAAS 316 (779)
Q Consensus 279 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~~~~~~ 316 (779)
..+++|+.|+|++|.+.+..+..+..+++|+. .+.++.
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99999999999999998887778888888887 454443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-16 Score=180.22 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=106.5
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCC-------------CCcccccccCCCCCCcEEe-cccccCCcccch
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCK-------------RLKRISTSFCKLRSLVTLI-LLGCLNLEHFPE 253 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~-------------~~~~lp~~l~~l~~L~~L~-L~~~~~~~~~p~ 253 (779)
..|+.|+|++|.++.+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.+..
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~------ 422 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL------ 422 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH------
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc------
Confidence 45666777777777777777777777777776553 2333344444455555554 332211
Q ss_pred hhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCe
Q 004022 254 ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRS 333 (779)
Q Consensus 254 ~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~ 333 (779)
.+|+.+.+++|.++.+|. ..|+.|++++|.+.+ +|. ++.+++|+.
T Consensus 423 -----~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~------------------------lp~-~~~l~~L~~ 467 (567)
T 1dce_A 423 -----DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV------------------------LCH-LEQLLLVTH 467 (567)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS------------------------CCC-GGGGTTCCE
T ss_pred -----chhhhhhhhcccccccCc-----cCceEEEecCCCCCC------------------------CcC-ccccccCcE
Confidence 011111112222222221 135555555543321 222 444555555
Q ss_pred eeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccC--ChhccCCCCCCEEEcCCCC
Q 004022 334 LDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESL--PAIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 334 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~ 411 (779)
|++++|.+.. +|.. +..+++|+.|+|++|.++.+| .++.+++|+.|+|++|+++.+ |..+..+++|+.|++++|+
T Consensus 468 L~Ls~N~l~~-lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 468 LDLSHNRLRA-LPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EECCSSCCCC-CCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred eecCcccccc-cchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 6666555552 3322 456666666666666666666 566666777777777766655 6666667777777777766
Q ss_pred CCCcCCCC------CCCccEEE
Q 004022 412 MLQSLPEL------PLCLKYLH 427 (779)
Q Consensus 412 ~~~~~~~~------~~~L~~L~ 427 (779)
+.+..+.. +++|+.|+
T Consensus 545 l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 545 LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCccHHHHHHHHCcccCccC
Confidence 66554432 35666664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-16 Score=174.97 Aligned_cols=210 Identities=18% Similarity=0.151 Sum_probs=139.6
Q ss_pred CCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEE
Q 004022 208 ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVL 287 (779)
Q Consensus 208 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 287 (779)
...++|+.|+|++|.+ +.+|..++.+++|+.|++++|.....+|..+.. + +.....|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~------~----~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRA------L----DPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------H----CTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHh------c----ccccCCHHHHHHHHhcccC
Confidence 4456666666666553 455666666666666666554311111100000 0 0111233344555555555
Q ss_pred e-ccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCC
Q 004022 288 F-VEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV 366 (779)
Q Consensus 288 ~-L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l 366 (779)
+ ++.+ .+..|.......+.+..++. ..|+.|++++|.+.+. |. +..+++|+.|++++|.+
T Consensus 415 ~~l~~n-----------~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~l-p~--~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 415 DPMRAA-----------YLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVL-CH--LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp CGGGHH-----------HHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSC-CC--GGGGTTCCEEECCSSCC
T ss_pred cchhhc-----------ccchhhhhhhhcccccccCc-----cCceEEEecCCCCCCC-cC--ccccccCcEeecCcccc
Confidence 5 3332 12344442222333333332 2489999999998874 43 67899999999999999
Q ss_pred ccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcC-CC---CCCCccEEEEecCCCCCCCCC---
Q 004022 367 REIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSL-PE---LPLCLKYLHLIDCKMLQSLPV--- 439 (779)
Q Consensus 367 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~-~~---~~~~L~~L~l~~c~~l~~lp~--- 439 (779)
+.+|..++.+++|+.|+|++|.++.+| .++.+++|+.|+|++|.+.+.. |. .+++|+.|++++|+.-...|.
T Consensus 476 ~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 476 RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred cccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 999999999999999999999999999 8999999999999999998876 65 358899999999975433332
Q ss_pred ----CCCCccEEEe
Q 004022 440 ----LPFCLESLDL 449 (779)
Q Consensus 440 ----l~~~L~~L~l 449 (779)
+| +|+.|++
T Consensus 555 l~~~lp-~L~~L~l 567 (567)
T 1dce_A 555 LAEMLP-SVSSILT 567 (567)
T ss_dssp HHHHCT-TCSEEEC
T ss_pred HHHHCc-ccCccCC
Confidence 33 7887753
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-14 Score=165.62 Aligned_cols=137 Identities=22% Similarity=0.136 Sum_probs=96.7
Q ss_pred ecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC
Q 004022 195 LGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL 274 (779)
Q Consensus 195 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l 274 (779)
|++|.+..+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+
T Consensus 231 Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~l 308 (727)
T 4b8c_D 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTL 308 (727)
T ss_dssp CTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred CCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCcc
Confidence 333333667777777888888888888766 77877888888888888888776 6788888899999999999999999
Q ss_pred CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH--HHhhcccCCcCCccccCccccCeeeccCC
Q 004022 275 PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY--ILAAASAISQLPSSVALSNMLRSLDSSHC 339 (779)
Q Consensus 275 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~--~~~~~~~~~~lp~~l~~l~~L~~L~l~~n 339 (779)
|..++.+++|+.|+|++|.+.+.+|..+..+..... .+.++.....+|. .|+.|+++.|
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 988999999999999999988877776654433222 4555555445554 3445555554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=128.08 Aligned_cols=74 Identities=23% Similarity=0.207 Sum_probs=40.8
Q ss_pred CcccCCCCCccEEeeeCCCCCccc-ccccCCCCCCcEEecccccCCcccc---hhhhcCccCcEeecCCcCCCcCCcc
Q 004022 204 PSSIECLTDLEVLDLRGCKRLKRI-STSFCKLRSLVTLILLGCLNLEHFP---EILEKMEHLKRIYSDRTPITELPSS 277 (779)
Q Consensus 204 p~~l~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~~p---~~l~~l~~L~~L~L~~n~i~~lp~~ 277 (779)
|..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.++|.+
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 333444555555565555543321 1345556666666666665544333 3566666666666666666666653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-14 Score=167.07 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=109.9
Q ss_pred ecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC
Q 004022 195 LGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL 274 (779)
Q Consensus 195 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l 274 (779)
+..|.+...+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc
Confidence 334444656778889999999999999865 67777888999999999999877 7899999999999999999999999
Q ss_pred CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCC
Q 004022 275 PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLS 354 (779)
Q Consensus 275 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 354 (779)
|..++.+++|+.|+|++|.+. . +|..++.+++|+.|+|++|.+.+.++........
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~-----------------------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 341 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-T-----------------------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-C-----------------------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCC-c-----------------------cChhhhcCCCccEEeCCCCccCCCChHHHhhcch
Confidence 999999999999999998643 3 3445667788999999999888776654311111
Q ss_pred CCcEEEecCCCCcc-CCcccCCCCCccEEEEecC
Q 004022 355 AMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGN 387 (779)
Q Consensus 355 ~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n 387 (779)
.+..|++++|.++. +| ..|+.|+++.|
T Consensus 342 ~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 342 TGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHCCCCCCCC------CC---------
T ss_pred hhhHHhhccCcccCcCc------cccceeEeecc
Confidence 12235677777765 44 34566667666
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=137.93 Aligned_cols=237 Identities=11% Similarity=0.069 Sum_probs=156.1
Q ss_pred hhhc-ccCCceEeeccCcccccccCCCC-ccccccccceeecCCCCCCC--------CCCceEEEccCCCCCCCCCC-C-
Q 004022 43 AFTN-MSNLRLFKFYVPKFYEIEKLPSM-STEEQLSYSKVQLPNGLDYL--------PKKLRYLHWDTYPLRTLPSN-F- 110 (779)
Q Consensus 43 ~f~~-l~~Lr~L~l~~n~l~~i~~l~~l-~~~~~~~~~~~~l~~~l~~l--------~~~L~~L~l~~n~l~~lp~~-~- 110 (779)
.+.. +++|+.|+|++|+++.+...... ............+|+..+.- ..+|+.|++.+ .++.|+.. |
T Consensus 43 ~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 43 HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred HHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 3444 78899999999999732221111 11122222333677766655 46999999999 89999865 5
Q ss_pred CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC---CCCCCC--CCCCCCCc-EEEecCCcCcc---
Q 004022 111 KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS---LRSFPS--NLHFVCPV-TINFSYCVNLI--- 181 (779)
Q Consensus 111 ~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~---l~~~p~--~~~l~~L~-~L~L~~~~~l~--- 181 (779)
++.+|+.|++++|.+..+ -+.+|..+.++..+.+..... ...+.. +.++..|+ .+.+.....+.
T Consensus 122 ~~~~L~~l~l~~n~i~~i-------~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~ 194 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNL-------LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEI 194 (329)
T ss_dssp TCTTCCEEEBCCSSCCEE-------CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHH
T ss_pred cCcccceEEcCCCCcccc-------chhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHH
Confidence 899999999999998876 455677777777777655221 111111 23344444 33332211110
Q ss_pred -------------------------ccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCC
Q 004022 182 -------------------------EFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLR 235 (779)
Q Consensus 182 -------------------------~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 235 (779)
.+.....+|+.|++.+|.+..+|. .|.++++|+.|++.++ +...-+.+|.++.
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 011124678888888888888886 5777888888888876 3444445578888
Q ss_pred CCc-EEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCCCEEec
Q 004022 236 SLV-TLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFV 289 (779)
Q Consensus 236 ~L~-~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L 289 (779)
+|+ .+.+.+ .....-+..|.++++|+.++++++.++.++.. |.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888 888877 45555567788888888888888888888764 788888888753
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=124.58 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=60.7
Q ss_pred CCCcEEecccccCC-cccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHh
Q 004022 235 RSLVTLILLGCLNL-EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILA 313 (779)
Q Consensus 235 ~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~ 313 (779)
++|++|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.+.+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~--------------- 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGL--------------- 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCC---------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHH---------------
Confidence 34444444444433 23444444445555555555555544 34555555555555555433221
Q ss_pred hcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCc----ccCCCCCccEEEEecCCC
Q 004022 314 AASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ----EIAYLSSLEILYLSGNNF 389 (779)
Q Consensus 314 ~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~----~l~~l~~L~~L~Ls~n~l 389 (779)
|..+..+++|+.|++++|.+........+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+
T Consensus 88 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 88 --------DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp --------CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred --------HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 12222334444444444444332211123344455555555555444443 344455555555555544
Q ss_pred ccCC
Q 004022 390 ESLP 393 (779)
Q Consensus 390 ~~lp 393 (779)
..+|
T Consensus 160 ~~~~ 163 (168)
T 2ell_A 160 QEAP 163 (168)
T ss_dssp CBCC
T ss_pred hhcc
Confidence 4444
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.8e-12 Score=123.22 Aligned_cols=130 Identities=17% Similarity=0.046 Sum_probs=92.7
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCc-cccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPS-SIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~-~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
-++++++++.++.+|..+. .+|++|+|++|+|+.+ .+. .|+.+++|++|+|++|.+.+..|. +.++++|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRI-------SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSB-------CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCcc-------CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 3688999999999998663 3899999999999874 222 378889999999999886655454 45577777
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
+|++++|... ...+..+..+++|++|++++|++.+..|..+..+++|++|++++|.....
T Consensus 82 ~L~Ls~N~l~--------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 82 ELQLGENKIK--------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSCCCC--------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCC--------------------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 7777766543 22233466677777777777777666676677777777777777665543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-12 Score=122.89 Aligned_cols=91 Identities=21% Similarity=0.142 Sum_probs=59.8
Q ss_pred cCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcC-CccCCCCCCCC
Q 004022 207 IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLE 285 (779)
Q Consensus 207 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~ 285 (779)
++.+++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 45566666666666665555555666666666666666666665566666667777777777777754 45577777777
Q ss_pred EEeccCCCCCCC
Q 004022 286 VLFVEDCSKLDN 297 (779)
Q Consensus 286 ~L~L~~~~~~~~ 297 (779)
.|++++|++...
T Consensus 130 ~L~L~~N~l~c~ 141 (192)
T 1w8a_A 130 SLNLASNPFNCN 141 (192)
T ss_dssp EEECTTCCBCCS
T ss_pred EEEeCCCCccCc
Confidence 777777766543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=120.49 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=17.1
Q ss_pred CceEEEccCCCCC--CCCCCC-CCCCCcEEECCCCCCC
Q 004022 92 KLRYLHWDTYPLR--TLPSNF-KPKNLVELNLRCSKVE 126 (779)
Q Consensus 92 ~L~~L~l~~n~l~--~lp~~~-~l~~L~~L~L~~n~i~ 126 (779)
+|++|++++|.++ .+|..+ .+++|++|++++|.++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 55 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT 55 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC
Confidence 4555555555554 444443 4444444444444444
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.9e-12 Score=121.72 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=97.8
Q ss_pred CCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
.+|+.|++++|.+..+|..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+....+..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 45777777777778999999999999999999999888777889999999999999999988888899999999999999
Q ss_pred CcCCCcCCcc-CCCCCCCCEEeccCCCCCC
Q 004022 268 RTPITELPSS-FENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 268 ~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~ 296 (779)
+|.++.+|.. +..+++|+.|++++|+...
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999999885 8899999999999987643
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=119.70 Aligned_cols=124 Identities=20% Similarity=0.266 Sum_probs=86.3
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTI 172 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L 172 (779)
++++++++.++.+|..+ .++|++|+|++|+|+. +|..|..+++|++|+|++|.+....+. +.++++|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~--------ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTL--------VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCS--------CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCch--------hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 57899999999999765 3689999999999986 678888999999999999885544333 5566777777
Q ss_pred EecCCcCccccCCcCCCccEEEecCcCCcccC-cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccC
Q 004022 173 NFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLN 247 (779)
Q Consensus 173 ~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 247 (779)
++++|... .++ ..+..+++|++|+|++|.+....+..+..+++|+.|++++|..
T Consensus 84 ~Ls~N~l~---------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 84 ILSYNRLR---------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp ECCSSCCC---------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCccC---------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 77666543 333 3456666666666666665544444455566666666666544
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-12 Score=119.26 Aligned_cols=85 Identities=26% Similarity=0.198 Sum_probs=45.4
Q ss_pred ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc-cchhhhcCccCcEeecCCcCCCcCCc----cCCC
Q 004022 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH-FPEILEKMEHLKRIYSDRTPITELPS----SFEN 280 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L~L~~n~i~~lp~----~l~~ 280 (779)
.++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++.+|. .+..
T Consensus 59 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 59 NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138 (149)
T ss_dssp TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH
T ss_pred hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH
Confidence 344455555555555554444444444455555555555554432 23455556666666666666665554 3555
Q ss_pred CCCCCEEecc
Q 004022 281 LPGLEVLFVE 290 (779)
Q Consensus 281 l~~L~~L~L~ 290 (779)
+++|+.|+++
T Consensus 139 l~~L~~L~l~ 148 (149)
T 2je0_A 139 LPQLTYLDGY 148 (149)
T ss_dssp CTTCCEETTB
T ss_pred CCCcccccCC
Confidence 6666666554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.7e-12 Score=120.85 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=45.5
Q ss_pred ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccch--hhhcCccCcEeecCCcCCCcCCcc----CC
Q 004022 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPE--ILEKMEHLKRIYSDRTPITELPSS----FE 279 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~--~l~~l~~L~~L~L~~n~i~~lp~~----l~ 279 (779)
.++.+++|++|++++|.+....+..+..+++|++|++++|.+ +.+|. .+..+++|+.|++++|.++.+|.. +.
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~ 137 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 137 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHH
Confidence 344455555555555544332222224455555555555544 22333 455566666666666666655553 55
Q ss_pred CCCCCCEEeccCCC
Q 004022 280 NLPGLEVLFVEDCS 293 (779)
Q Consensus 280 ~l~~L~~L~L~~~~ 293 (779)
.+++|+.|++++|.
T Consensus 138 ~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 138 KVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCSEETTEECC
T ss_pred HCCccceeCCCcCC
Confidence 66666666666553
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.6e-11 Score=113.46 Aligned_cols=131 Identities=16% Similarity=0.108 Sum_probs=85.6
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
+.+.++++++.++.+|..+ +++|++|++++|+++.+ .+..|..+++|++|++++|.+....+. +.++++|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSL-------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEe-------CHHHhcCcccccEEECCCCcceEeChhHccCCCccC
Confidence 3567888888888888654 36888888888888764 344567888888888888875433333 34566777
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 249 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 249 (779)
+|++++|.. ..+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|....
T Consensus 80 ~L~l~~N~l---------------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 80 ILYLHENKL---------------------QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCC---------------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCCc---------------------cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 776666654 33333 34566677777777766554433334566666777776666554
Q ss_pred cc
Q 004022 250 HF 251 (779)
Q Consensus 250 ~~ 251 (779)
..
T Consensus 139 ~~ 140 (177)
T 2o6r_A 139 SC 140 (177)
T ss_dssp CH
T ss_pred cC
Confidence 33
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-11 Score=113.72 Aligned_cols=109 Identities=22% Similarity=0.278 Sum_probs=90.3
Q ss_pred CCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeec
Q 004022 188 GKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYS 266 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 266 (779)
.+|+.|++++|.+..++. .++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 345555555566666665 4688999999999999877666666788999999999999888777777899999999999
Q ss_pred CCcCCCcCCcc-CCCCCCCCEEeccCCCCCC
Q 004022 267 DRTPITELPSS-FENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 267 ~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~ 296 (779)
++|.++.+|.. +..+++|+.|++++|++.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999886 5889999999999997654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-11 Score=125.87 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=57.5
Q ss_pred ccCccccCeeeccCCCCCCccChhhccCCCCCc-EEEecCCCCccCC-cccCCCCCccEEEEecCCCccCC-hhccCCCC
Q 004022 325 VALSNMLRSLDSSHCKGLESFPRTFLLGLSAMG-LLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLP-AIIKQMSQ 401 (779)
Q Consensus 325 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~ 401 (779)
|..+++|+.+++.+| ...++...|.++.+|+ .+++.+ .++.++ ..|..+++|+.|++++|+++.++ ..|.++++
T Consensus 246 F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 444555555555554 3334444577888888 888887 677754 56888999999999999999887 47888999
Q ss_pred CCEEE
Q 004022 402 LRFIH 406 (779)
Q Consensus 402 L~~L~ 406 (779)
|+.++
T Consensus 323 L~~ly 327 (329)
T 3sb4_A 323 SKLIY 327 (329)
T ss_dssp CCEEE
T ss_pred hhhhc
Confidence 98875
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.3e-12 Score=119.72 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=33.0
Q ss_pred CCceEEEccCCCCCCCCCCCCCC-CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCC
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPK-NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 155 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~-~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~ 155 (779)
.+|++|++++|.++.+|....+. +|++|++++|.|+.+ ..+..+++|++|++++|.
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---------~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---------DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---------CCCCCCSSCCEEECCSSC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---------cccccCCCCCEEECCCCc
Confidence 46677777777766665443333 666666666666542 234455566666665555
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-09 Score=116.10 Aligned_cols=237 Identities=9% Similarity=0.098 Sum_probs=109.1
Q ss_pred CceEEEccCCCCCCCCCC-CCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCC
Q 004022 92 KLRYLHWDTYPLRTLPSN-FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCP 169 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~-~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L 169 (779)
+|+.+.+..+ ++.|+.. |.-.+|+.+.+.. .++.+ -+.+|.++++|+.+++.+|. ++.++. .+...+|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I-------~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQL-------KEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGI 205 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEE-------CSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEe-------hHHHhhCcccCCeeecCCCc-ceEechhhEeeccc
Confidence 5666666554 5556543 3224566666664 45544 23456666666666666655 333332 2334556
Q ss_pred cEEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC
Q 004022 170 VTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 248 (779)
+.+.+..+ + ..++. .|.++++|+.+++..+ +...-..+|.+ .+|+.+.+.. ...
T Consensus 206 ~~l~lp~~--l--------------------~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 206 EEVLLPVT--L--------------------KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp SEEECCTT--C--------------------CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred CEEEeCCc--h--------------------heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence 66655532 2 22221 2333444444444331 11111122222 3444444421 222
Q ss_pred cccchhhhcCccCcEeecCCcCCC-----cCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCC
Q 004022 249 EHFPEILEKMEHLKRIYSDRTPIT-----ELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP 322 (779)
Q Consensus 249 ~~~p~~l~~l~~L~~L~L~~n~i~-----~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp 322 (779)
..-...|.++++|+.+.+.++.+. .++. .|..+++|+.+.+.++ ...++ .
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~----------------------~ 316 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILG----------------------Q 316 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEEC----------------------T
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEh----------------------h
Confidence 222333444444444444443332 2332 2455555555554421 11111 1
Q ss_pred ccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cccCCC-CCccEEEEecCCCc
Q 004022 323 SSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QEIAYL-SSLEILYLSGNNFE 390 (779)
Q Consensus 323 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l-~~L~~L~Ls~n~l~ 390 (779)
..|.++++|+.+.+..+ ...+....|.++ +|+.+.+.++....++ ..+..+ .+++.|.+..+.+.
T Consensus 317 ~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 12344455555555333 222333335566 7777777777666643 334555 36777777766544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-13 Score=133.72 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=46.5
Q ss_pred hhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCC-CCCCCcEEECC
Q 004022 43 AFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLR 121 (779)
Q Consensus 43 ~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~ 121 (779)
.+....+++.++++.+.+++. ++ .-..+|..+..+ ++|++|++++|.++.+| .+ .+++|++|+++
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~--~~----------~l~~l~~~~~~l-~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~ 78 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGM--IP----------PIEKMDATLSTL-KACKHLALSTNNIEKIS-SLSGMENLRILSLG 78 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBC--CT----------TCCCCHHHHHHT-TTCSEEECSEEEESCCC-CHHHHTTCCEEEEE
T ss_pred HHHhcccccCcchheeEeccc--cC----------cHhhhhHHHhcC-CCCCEEECCCCCCcccc-ccccCCCCCEEECC
Confidence 355666777777766665310 00 001122234444 35666666666665555 33 55556666666
Q ss_pred CCCCCCccCCCCcccCccccCCCCCcEEeccCCC
Q 004022 122 CSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 155 (779)
Q Consensus 122 ~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~ 155 (779)
+|.++. +|..+..+++|++|++++|.
T Consensus 79 ~n~l~~--------l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 79 RNLIKK--------IENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp EEEECS--------CSSHHHHHHHCSEEEEEEEE
T ss_pred CCCccc--------ccchhhcCCcCCEEECcCCc
Confidence 655554 44444445555555555554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-12 Score=128.66 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=79.0
Q ss_pred hhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCe
Q 004022 254 ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRS 333 (779)
Q Consensus 254 ~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~ 333 (779)
.+..+++|++|++++|.++.+| .+..+++|+.|++++|.+. .+|..+..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~------------------------~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK------------------------KIENLDAVADTLEE 97 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC------------------------SCSSHHHHHHHCSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc------------------------cccchhhcCCcCCE
Confidence 5666666666666666666666 5666666666666665432 12333344566667
Q ss_pred eeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCc--ccCCCCCccEEEEecCCCccCCh-----------hccCCC
Q 004022 334 LDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQ--EIAYLSSLEILYLSGNNFESLPA-----------IIKQMS 400 (779)
Q Consensus 334 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~--~l~~l~~L~~L~Ls~n~l~~lp~-----------~l~~l~ 400 (779)
|++++|.+.+. + .+..+++|+.|++++|.++.++. .+..+++|++|++++|.++..+. .+..++
T Consensus 98 L~L~~N~l~~l-~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 98 LWISYNQIASL-S--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEECCCH-H--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EECcCCcCCcC-C--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 77777666553 2 24466777777777777776543 56777788888888877764321 267778
Q ss_pred CCCEEE
Q 004022 401 QLRFIH 406 (779)
Q Consensus 401 ~L~~L~ 406 (779)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 888765
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=107.74 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=90.6
Q ss_pred cEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcC
Q 004022 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTP 270 (779)
Q Consensus 191 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 270 (779)
+.++++++.+..+|..+. ++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567788888888988775 889999999999888778889999999999999998877666678899999999999999
Q ss_pred CCcCCcc-CCCCCCCCEEeccCCCCCC
Q 004022 271 ITELPSS-FENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 271 i~~lp~~-l~~l~~L~~L~L~~~~~~~ 296 (779)
++.+|.. +..+++|+.|++++|++..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999886 8999999999999987653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.09 E-value=4.3e-10 Score=106.92 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=91.2
Q ss_pred ccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 190 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
.+.+++++|.+..+|..+. ++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677788888888888764 78999999999988887888999999999999999888777777899999999999999
Q ss_pred CCCcCCcc-CCCCCCCCEEeccCCCCCC
Q 004022 270 PITELPSS-FENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 270 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~ 296 (779)
.++.+|.. +..+++|+.|+|++|++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999875 8899999999999987654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.05 E-value=7.7e-09 Score=112.43 Aligned_cols=222 Identities=13% Similarity=0.095 Sum_probs=159.1
Q ss_pred ccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCC
Q 004022 36 GINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPK 113 (779)
Q Consensus 36 ~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~ 113 (779)
...+...+|.++ +|+.+.+..+ ++ .++...+.- .+|+.+.+.. .++.++.. | .+.
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~-------------------~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LK-------------------SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCY 180 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CC-------------------EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCT
T ss_pred cCEehHhhcccC-CccEEEeCCC-cc-------------------EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcc
Confidence 356778899986 7999999765 42 455554444 3788888886 67777754 5 888
Q ss_pred CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccCCc-C--C
Q 004022 114 NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFPQI-S--G 188 (779)
Q Consensus 114 ~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~~~-~--~ 188 (779)
+|+.+++++|+++.+..+ +| ...+|+.+.|..+ ++.++. |.++++|+.+.+..+ +..++.. + .
T Consensus 181 ~L~~l~l~~n~l~~I~~~-------aF-~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~ 248 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPAS-------TF-VYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRES 248 (401)
T ss_dssp TCCEEECTTSCCSEECTT-------TT-TTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTC
T ss_pred cCCeeecCCCcceEechh-------hE-eecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccC
Confidence 999999998888885222 33 3688888888754 455544 667888999988764 3333211 1 5
Q ss_pred CccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCC-----cccccccCCCCCCcEEecccccCCcccchhhhcCccCc
Q 004022 189 KVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRL-----KRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLK 262 (779)
Q Consensus 189 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~-----~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 262 (779)
+|+.+.+ .+.+..++. .|.++++|+.+.+.++... ..-+..|.++++|+.+.+.. .....-...|.++.+|+
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 7888888 455666754 7788999999999886543 24455688899999999984 44444566788899999
Q ss_pred EeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCC
Q 004022 263 RIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 263 ~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~ 296 (779)
.+.+..+ ++.++. .|.++ +|+.+++.++....
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 9999654 777765 48888 99999998875544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.4e-09 Score=111.98 Aligned_cols=308 Identities=10% Similarity=0.049 Sum_probs=137.6
Q ss_pred ccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCC
Q 004022 36 GINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPK 113 (779)
Q Consensus 36 ~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~ 113 (779)
...+...||.++++|+.+.|..+ ++ .+.+..+.-..+|+.+++..+ ++.++.. | .+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-------------------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~ 117 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-------------------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY 117 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-------------------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-------------------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc
Confidence 44577788888888888888533 42 444443332257888887644 6666544 3 667
Q ss_pred CCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC----CcCCC
Q 004022 114 NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP----QISGK 189 (779)
Q Consensus 114 ~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~----~~~~~ 189 (779)
+|+.+.+..+ ++.+ -..+|.+...++.......... .-..+.++.+|+.+.+..+. ..++ ....+
T Consensus 118 ~L~~i~~p~~-l~~i-------~~~aF~~~~~~~~~~~~~~~~i-~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~ 186 (394)
T 4fs7_A 118 ALKSILLPLM-LKSI-------GVEAFKGCDFKEITIPEGVTVI-GDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGK 186 (394)
T ss_dssp TCCCCCCCTT-CCEE-------CTTTTTTCCCSEEECCTTCCEE-CTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTT
T ss_pred cchhhcccCc-eeee-------cceeeecccccccccCcccccc-chhhhcccCCCcEEecCCcc--ceeccccccCCCC
Confidence 7777666543 3332 1223333333332222221111 11124455666666654331 1111 11123
Q ss_pred ccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCC
Q 004022 190 VTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 268 (779)
Q Consensus 190 L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 268 (779)
|+.+.+..+ +..++. .+.++..|+.+.+..+. ..+........+|+.+.+... ....-...+..+..|+.+.+..
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC
Confidence 333333322 222222 33334444444433221 111111222334444444321 1111122333444444444443
Q ss_pred cCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 269 TPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 269 n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
+...--...+..+..++.+...... + ....+..+.+|+.+.+..+ ...+...
T Consensus 263 ~~~~i~~~~F~~~~~l~~~~~~~~~----i----------------------~~~~F~~~~~L~~i~l~~~--i~~I~~~ 314 (394)
T 4fs7_A 263 NKLRIGGSLFYNCSGLKKVIYGSVI----V----------------------PEKTFYGCSSLTEVKLLDS--VKFIGEE 314 (394)
T ss_dssp TTCEECSCTTTTCTTCCEEEECSSE----E----------------------CTTTTTTCTTCCEEEECTT--CCEECTT
T ss_pred CcceeeccccccccccceeccCcee----e----------------------ccccccccccccccccccc--cceechh
Confidence 3222112223444444444333211 0 0112344555666655433 2223334
Q ss_pred hccCCCCCcEEEecCCCCccCC-cccCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCC
Q 004022 349 FLLGLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLED 409 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~ 409 (779)
.+.++.+|+.+++.++ ++.+. .+|..+.+|+.+++..+ ++.+. .+|.++++|+.+++..
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 4556666666666433 44443 34566666666666554 55554 4566666666666644
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-09 Score=101.46 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=74.2
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
..+++++++|.++.+|..+ .++|++|+|++|+|+.+ .|..|..+++|++|+|++|++....+. +.++++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~-------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKL-------EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCcc-------ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 4578999999999999776 38899999999999885 577788899999999999885433333 34566666
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCC
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRL 224 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~ 224 (779)
+|++++|.. ..+|. .+..+++|++|++++|.+.
T Consensus 82 ~L~L~~N~l---------------------~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 82 QLSLNDNQL---------------------KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EEECCSSCC---------------------CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCcc---------------------CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666665543 44443 3566667777777766543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=101.63 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=73.6
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~ 170 (779)
-+.++++++.++.+|..+. ++|++|+|++|+|+.+ .|..|.++++|++|+|++|++. .+|. +.++++|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKL-------EPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLT 84 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCcccc-------CHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhh
Confidence 4689999999999998764 8899999999999875 5777888999999999998744 3443 34566666
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcc-cCCCCCccEEeeeCCCCC
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSS-IECLTDLEVLDLRGCKRL 224 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~ 224 (779)
.|++++|.. ..+|.. +..+++|++|++++|.+.
T Consensus 85 ~L~L~~N~l---------------------~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 85 QLDLNDNHL---------------------KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCC---------------------CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EEECCCCcc---------------------ceeCHHHhccccCCCEEEeCCCCcc
Confidence 666665543 444443 566667777777766543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-08 Score=104.40 Aligned_cols=305 Identities=13% Similarity=0.007 Sum_probs=153.1
Q ss_pred ecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCC
Q 004022 81 QLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR 158 (779)
Q Consensus 81 ~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~ 158 (779)
.+.+..+.-..+|+.+.+.. .++.|+.. | ++.+|+.+++..+ ++.+ -..+|.++.+|+.+.+..+ +.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I-------~~~aF~~c~~L~~i~~p~~--l~ 129 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMI-------GRCTFSGCYALKSILLPLM--LK 129 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEE-------CTTTTTTCTTCCCCCCCTT--CC
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEc-------cchhhcccccchhhcccCc--ee
Confidence 45544443335777777753 36666544 4 6777777777644 5543 2234556666766655443 22
Q ss_pred CCC--CCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccCCCC
Q 004022 159 SFP--SNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLR 235 (779)
Q Consensus 159 ~~p--~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 235 (779)
.+. .+.++..++....... ..+ ...|.++++|+.+.+..+ ....-...|.++.
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~~-----------------------~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~ 185 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEGV-----------------------TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCG 185 (394)
T ss_dssp EECTTTTTTCCCSEEECCTTC-----------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred eecceeeecccccccccCccc-----------------------cccchhhhcccCCCcEEecCCc-cceeccccccCCC
Confidence 221 1223322222221111 111 123444555555555432 1222223344555
Q ss_pred CCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhc
Q 004022 236 SLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAA 315 (779)
Q Consensus 236 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~ 315 (779)
+|+.+.+..+ ....-...+.++..|+.+.+..+.. .+........+|+.+.+... ....-...+..+..|+......
T Consensus 186 ~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 186 KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred CceEEEcCCC-ceEeCchhhccccccceeecCCCce-EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC
Confidence 5555555432 2222223344445555544433221 11222222334444444321 1111111222222222200011
Q ss_pred ccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cccCCCCCccEEEEecCCCccCC-
Q 004022 316 SAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLP- 393 (779)
Q Consensus 316 ~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp- 393 (779)
+........+..+..++.+...... .+...+.++.+|+.+.+.++ +..++ ..+..+.+|+.++|..+ ++.+.
T Consensus 263 ~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 263 NKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp TTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred CcceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence 1111122345566777777765543 34445778999999999765 66654 45788999999999754 77776
Q ss_pred hhccCCCCCCEEEcCCCCCCCcCCC-CC---CCccEEEEecC
Q 004022 394 AIIKQMSQLRFIHLEDFNMLQSLPE-LP---LCLKYLHLIDC 431 (779)
Q Consensus 394 ~~l~~l~~L~~L~Ls~n~~~~~~~~-~~---~~L~~L~l~~c 431 (779)
.+|.++++|+.+.+..+ +..++. .+ .+|+.+++..+
T Consensus 337 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 67899999999999765 344433 22 67888887654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=107.79 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=89.2
Q ss_pred EEEecCc-CCcccCcccCCCCCccEEeeeC-CCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 192 RLYLGQS-AIEEVPSSIECLTDLEVLDLRG-CKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 192 ~L~L~~n-~i~~lp~~l~~l~~L~~L~L~~-~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
.++.+++ .+..+|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 7789999 99999999999996 8877666678999999999999999998888889999999999999999
Q ss_pred CCCcCCccCCCCCCCCEEeccCCCCCC
Q 004022 270 PITELPSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 270 ~i~~lp~~l~~l~~L~~L~L~~~~~~~ 296 (779)
.++.+|..+.....|+.|+|.+|++..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 999998874443349999999987654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.3e-10 Score=118.88 Aligned_cols=160 Identities=12% Similarity=0.023 Sum_probs=82.4
Q ss_pred CCceEEEccCCCCCCCCCC-----C--CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-
Q 004022 91 KKLRYLHWDTYPLRTLPSN-----F--KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS- 162 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~-----~--~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~- 162 (779)
..|++|++++|.++..... + ...+|++|+|++|.++.. + +..-...+++|+.|+|++|.+...-..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~--~----~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA--G----LRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH--H----HHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH--H----HHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 4677777777777643211 1 235777777777776531 1 011112345666677766653221110
Q ss_pred C-----CCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCc----ccccccCC
Q 004022 163 N-----LHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLK----RISTSFCK 233 (779)
Q Consensus 163 ~-----~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~----~lp~~l~~ 233 (779)
+ ...++|++|+|++|...... ...++..+...++|++|+|++|.+.. .++..+..
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~----------------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAG----------------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHH----------------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred HHHHHHhcCCccceeeCCCCCCChHH----------------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 0 12344444444444322100 01234444556667777777766432 22344555
Q ss_pred CCCCcEEecccccCCcc----cchhhhcCccCcEeecCCcCCC
Q 004022 234 LRSLVTLILLGCLNLEH----FPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 234 l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
.++|++|+|++|.+... ++..+...++|++|++++|.|+
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 66677777777665532 3344445566777777776665
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-09 Score=117.92 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=38.0
Q ss_pred cCCCCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCcc-----CChhccCCCCCCEEEcCCCCCC
Q 004022 351 LGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFES-----LPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 351 ~~l~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
...++|++|+|++|.+++ ++..+...++|++|+|++|.++. +...+...++|++|+|++|++.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 345556666666666554 23445555677777777777662 3344556677777777766543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-06 Score=93.34 Aligned_cols=152 Identities=10% Similarity=0.083 Sum_probs=87.8
Q ss_pred ccccChhhhhccc-CCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCC---CCCCCCC-C
Q 004022 36 GINLDPRAFTNMS-NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYP---LRTLPSN-F 110 (779)
Q Consensus 36 ~~~l~~~~f~~l~-~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~---l~~lp~~-~ 110 (779)
...+...||.+++ .|+.+.+-.+ + ..+.+..+.-..+|+.+.+..+. ++.++.. |
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-v-------------------t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF 110 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-V-------------------TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF 110 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-C-------------------CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-e-------------------eEEhHHHhhCCccCceEeecCCCCCeeeEechhhc
Confidence 3467788998885 5888888543 3 24544444333689998887663 6667644 4
Q ss_pred -CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCcEEEecCCcCccccCCc-
Q 004022 111 -KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPVTINFSYCVNLIEFPQI- 186 (779)
Q Consensus 111 -~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~~~- 186 (779)
.+.+|+.+.+..+ ++.+ -..+|..+.+|+.+.+..+ ...+++ +..+..|+.+.+..+ +..+...
T Consensus 111 ~~c~~L~~i~~~~~-~~~I-------~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~a 178 (394)
T 4gt6_A 111 MFCSELTDIPILDS-VTEI-------DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERA 178 (394)
T ss_dssp TTCTTCCBCGGGTT-CSEE-------CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTT
T ss_pred hhcccceeeccCCc-ccee-------hhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEecccc
Confidence 6788888777654 4443 2345678888888888654 233333 556778888877654 2111110
Q ss_pred --CCCccEEEecCcCCcccCcccCCCCCccEEeee
Q 004022 187 --SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLR 219 (779)
Q Consensus 187 --~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~ 219 (779)
-.+|+.+.+..+....-...+..+..++.....
T Consensus 179 F~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 179 FTGTALTQIHIPAKVTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp TTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEEC
T ss_pred ccccceeEEEECCcccccccchhhhccccceeccc
Confidence 123555554443333223344444555544443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=98.86 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=45.5
Q ss_pred cccC-cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCc
Q 004022 201 EEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITE 273 (779)
Q Consensus 201 ~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~ 273 (779)
..++ ..|+.+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..+..++ |+.|++.+|.+..
T Consensus 45 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 45 QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 4444 3566666777777777666665565666677777777777666554444455444 7777777777653
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.8e-08 Score=105.05 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=53.5
Q ss_pred hHHHhhcCcccccEEEEEeeccccccccc------ChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCC
Q 004022 11 SLFLFFFYKGTDAIEGIFLDLSKIKGINL------DPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPN 84 (779)
Q Consensus 11 i~~vL~~~~g~~~i~~i~Ld~s~~~~~~l------~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~ 84 (779)
.+.-+-.......|+.+.++..+...-.. -..+..++++||.|.+..+...+. .........+..
T Consensus 96 ~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~---------~is~~~~~~L~~ 166 (362)
T 2ra8_A 96 LMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ---------EISWIEQVDLSP 166 (362)
T ss_dssp HHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTC---------CGGGCBCCBCHH
T ss_pred HHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhc---------ccccccccCHHH
Confidence 33333345556678888888654221000 123456788999998865432100 000000011222
Q ss_pred CCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCC
Q 004022 85 GLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVE 126 (779)
Q Consensus 85 ~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~ 126 (779)
.+..+ ++|+.|.++++.-..++. +.+++|++|+|..+.+.
T Consensus 167 ll~~~-P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 167 VLDAM-PLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHTC-TTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCC
T ss_pred HHhcC-CCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCC
Confidence 23334 378888887763223443 34667777777666654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.9e-06 Score=88.25 Aligned_cols=287 Identities=12% Similarity=0.116 Sum_probs=147.1
Q ss_pred ecCCCCC-CCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCC---CCCccCCCCcccCccccCCCCCcEEeccCC
Q 004022 81 QLPNGLD-YLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSK---VEQPWEGEKACVPSSIQNFKYLSALSFKGC 154 (779)
Q Consensus 81 ~l~~~l~-~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~---i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n 154 (779)
.+.+..+ .....|+.+.+... ++.|... | ++.+|+.+.+..+. ++.+ -..+|..+.+|+.+.+..+
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~I-------g~~aF~~c~~L~~i~~~~~ 124 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKI-------GRQAFMFCSELTDIPILDS 124 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEE-------CTTTTTTCTTCCBCGGGTT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEe-------chhhchhcccceeeccCCc
Confidence 4444433 33235888888653 7777654 5 78889998887653 5554 2345777888887777654
Q ss_pred CCCCCCCC--CCCCCCCcEEEecCCcCccccC----CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc
Q 004022 155 QSLRSFPS--NLHFVCPVTINFSYCVNLIEFP----QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS 228 (779)
Q Consensus 155 ~~l~~~p~--~~~l~~L~~L~L~~~~~l~~~~----~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 228 (779)
.+.++. +.++.+|+.+.+.... ..+. ....+|+.+.+..+ +..+........+|+.+.+... ....-.
T Consensus 125 --~~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~ 198 (394)
T 4gt6_A 125 --VTEIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGT 198 (394)
T ss_dssp --CSEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECT
T ss_pred --cceehhhhhhhhccccccccccee--eeecccceecccccccccccce-eeEeccccccccceeEEEECCc-cccccc
Confidence 334433 5667888888876432 1121 11234555555433 3334332223345666555432 122222
Q ss_pred cccCCCCCCcEEecccccCCcccchh-h-------------hcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCC
Q 004022 229 TSFCKLRSLVTLILLGCLNLEHFPEI-L-------------EKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCS 293 (779)
Q Consensus 229 ~~l~~l~~L~~L~L~~~~~~~~~p~~-l-------------~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~ 293 (779)
..+.++.+++........... .... + .....+..+.+. +.++.+.. .|..+..|+.+.+.+..
T Consensus 199 ~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 199 NAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp TTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC
T ss_pred chhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccc
Confidence 334455555555443321110 0000 0 000111111111 11112211 24445555555543311
Q ss_pred CCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cc
Q 004022 294 KLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QE 372 (779)
Q Consensus 294 ~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~ 372 (779)
...-...+..+++|+.+.+... ...++...|.++.+|+.+.+..+ ++.+. ..
T Consensus 277 ------------------------~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 277 ------------------------VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp ------------------------CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ------------------------ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 0111223455667777776422 23344455677788888887653 55543 45
Q ss_pred cCCCCCccEEEEecCCCccCC-hhccCCCCCCEEEcCCCC
Q 004022 373 IAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFN 411 (779)
Q Consensus 373 l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~ 411 (779)
|..+.+|+.+.|..+ ++.+. .+|.++++|+.+++.++.
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 677788888888543 66665 567788888887777653
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-07 Score=98.65 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=66.5
Q ss_pred cCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCccc--CCCCCc
Q 004022 136 VPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSI--ECLTDL 213 (779)
Q Consensus 136 lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l--~~l~~L 213 (779)
+...+..+++|+.|+|++|... .++. ..+++|+.|++..|...... ...+ ..+++|
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~--------------------l~~l~~~~lp~L 221 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSV--------------------VEDILGSDLPNL 221 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHH--------------------HHHHHHSBCTTC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHH--------------------HHHHHHccCCCC
Confidence 3444556677777777766322 2333 23667777777665432110 0111 134555
Q ss_pred cEEeeeCC--CC-----Cccccccc--CCCCCCcEEecccccCCcccchhhh---cCccCcEeecCCcCCCc-----CCc
Q 004022 214 EVLDLRGC--KR-----LKRISTSF--CKLRSLVTLILLGCLNLEHFPEILE---KMEHLKRIYSDRTPITE-----LPS 276 (779)
Q Consensus 214 ~~L~L~~~--~~-----~~~lp~~l--~~l~~L~~L~L~~~~~~~~~p~~l~---~l~~L~~L~L~~n~i~~-----lp~ 276 (779)
+.|+|+.+ .. ...+...+ ..+++|++|+|.+|.+....+..+. .+++|++|+|+.|.++. ++.
T Consensus 222 ~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~ 301 (362)
T 2ra8_A 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301 (362)
T ss_dssp CEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT
T ss_pred cEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh
Confidence 55555321 00 00111111 1355666666665555433322222 35566666666666653 333
Q ss_pred cCCCCCCCCEEeccCCCC
Q 004022 277 SFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 277 ~l~~l~~L~~L~L~~~~~ 294 (779)
.+..+++|+.|+++.|.+
T Consensus 302 ~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 302 HVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHTTCSEEECCSBBC
T ss_pred hcccCCcceEEECCCCcC
Confidence 344566677777766543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.1e-05 Score=80.56 Aligned_cols=268 Identities=9% Similarity=0.017 Sum_probs=117.8
Q ss_pred cccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC-CCCCCC
Q 004022 37 INLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-FKPKNL 115 (779)
Q Consensus 37 ~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~~l~~L 115 (779)
..+...||.++.+|+.+.|..+ ++ .+.+..+.-. +|+.+.+..+ ++.++.. |...+|
T Consensus 58 t~Ig~~aF~~C~~L~~I~lp~~-v~-------------------~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L 115 (379)
T 4h09_A 58 TSIGEANFNSCYNMTKVTVAST-VT-------------------SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDL 115 (379)
T ss_dssp EEECTTTTTTCTTCCEEEECTT-CC-------------------EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCC
T ss_pred cChHHHHhhCCCCCCEEEeCCc-ce-------------------EechhhhcCC-CCceEECCce-eeEeccceeccCCc
Confidence 4566777888888888877543 32 3444333332 5555555432 5555433 344467
Q ss_pred cEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccC-----------
Q 004022 116 VELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP----------- 184 (779)
Q Consensus 116 ~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~----------- 184 (779)
+.+.+..+ ++.+. ..+|.+ .+|+.+.+..+-..-....+.++.+++.+.+..........
T Consensus 116 ~~i~lp~~-~~~i~-------~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (379)
T 4h09_A 116 DDFEFPGA-TTEIG-------NYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI 186 (379)
T ss_dssp SEEECCTT-CCEEC-------TTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE
T ss_pred ccccCCCc-ccccc-------cccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccce
Confidence 77777654 22221 112222 23444444332111111223445555555554432211000
Q ss_pred ----CcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCcc
Q 004022 185 ----QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH 260 (779)
Q Consensus 185 ----~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 260 (779)
.....+..+.+..+........+....+|+.+.+..+ ....-...+.++..|+.+.+..+ ....-...+.++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 187 LESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred eccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 0011222222222222222223344455555555432 12222233455556666655432 22222334555555
Q ss_pred CcEeecCCcCCCcCCcc-CCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCC
Q 004022 261 LKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHC 339 (779)
Q Consensus 261 L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n 339 (779)
|+.+.+.. .++.++.. +..+++|+.+.+.++.+...- ...|.++.+|+.+.+..+
T Consensus 265 l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-----------------------~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 265 LKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLE-----------------------PRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEEC-----------------------TTTTTTCTTCCEEECCTT
T ss_pred hccccccc-cceeccccccccccccccccccccccceeh-----------------------hhhhcCCCCCCEEEcCcc
Confidence 66655543 24444432 555566666655443221111 122445555666655432
Q ss_pred CCCCccChhhccCCCCCcEEEecC
Q 004022 340 KGLESFPRTFLLGLSAMGLLHISD 363 (779)
Q Consensus 340 ~~~~~~~~~~~~~l~~L~~L~Ls~ 363 (779)
...+....|.++.+|+.+.+..
T Consensus 321 --l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 321 --LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp --CCEECTTTTTTCTTCCCCCCCT
T ss_pred --ccEEHHHHhhCCCCCCEEEECC
Confidence 2223334455666666666543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00012 Score=78.75 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=40.4
Q ss_pred CccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCC-cccCCCCCccEEEEecCCCccCC-hhccCCCCCCE
Q 004022 327 LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRF 404 (779)
Q Consensus 327 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~ 404 (779)
.+..|+.+.+..+ ...+....+.++.+|+.+.+..+ +..++ ..+..+++|+.+.+.++.++.++ ..|.++.+|+.
T Consensus 238 ~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 238 GMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred CCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 3444444444332 12222333455556666665432 33333 23555666666666666666554 44666666666
Q ss_pred EEcC
Q 004022 405 IHLE 408 (779)
Q Consensus 405 L~Ls 408 (779)
+.|.
T Consensus 315 i~lp 318 (379)
T 4h09_A 315 VTLP 318 (379)
T ss_dssp EECC
T ss_pred EEcC
Confidence 6664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=1.4e-05 Score=76.48 Aligned_cols=92 Identities=11% Similarity=0.093 Sum_probs=61.5
Q ss_pred cCcccCCCCCccEEeeeCCCCCcc----cccccCCCCCCcEEecccccCCcc----cchhhhcCccCcEeec--CCcCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLEH----FPEILEKMEHLKRIYS--DRTPIT 272 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L--~~n~i~ 272 (779)
+...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +.+.+...++|++|++ ++|.+.
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 444556667788888888775432 333445567788888888776543 4555666777888888 778777
Q ss_pred c-----CCccCCCCCCCCEEeccCCCC
Q 004022 273 E-----LPSSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 273 ~-----lp~~l~~l~~L~~L~L~~~~~ 294 (779)
. +...+...++|+.|++++|.+
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3 444556667888888887754
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=9.8e-06 Score=77.69 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=31.9
Q ss_pred CCCccEEeeeCCCCCcc----cccccCCCCCCcEEec--ccccCCcc----cchhhhcCccCcEeecCCcCCC
Q 004022 210 LTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLIL--LGCLNLEH----FPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 210 l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L--~~~~~~~~----~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
.+.|++|+|++|.+... +...+...++|++|+| ++|.+... +.+.+...++|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555544321 2333444555666666 44544432 3344445566666666666554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.57 E-value=3.2e-05 Score=72.46 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC
Q 004022 105 TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS 156 (779)
Q Consensus 105 ~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~ 156 (779)
.+|... .-.+|++||++++.|+.. |. ..+..+++|++|+|++|..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~--GL-----~~L~~~~~L~~L~L~~C~~ 97 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSI--GF-----DHMEGLQYVEKIRLCKCHY 97 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGG--GG-----GGGTTCSCCCEEEEESCTT
T ss_pred cCCcccCCCceEeEEeCcCCCccHH--HH-----HHhcCCCCCCEEEeCCCCc
Confidence 344443 334677777777776642 21 2344666666666666653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.51 E-value=9e-05 Score=69.37 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=61.1
Q ss_pred ccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCc-ccchhhhcC----ccCcEeecCCcC-CCcC-
Q 004022 202 EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE-HFPEILEKM----EHLKRIYSDRTP-ITEL- 274 (779)
Q Consensus 202 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l----~~L~~L~L~~n~-i~~l- 274 (779)
.+|.....-.+|+.||+++|.+...--..+.++++|++|+|++|...+ .--..+..+ ++|++|++++|. |+.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 344433223468888888887554434446778888888888886443 333445553 468888888864 6621
Q ss_pred CccCCCCCCCCEEeccCCCCCC
Q 004022 275 PSSFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 275 p~~l~~l~~L~~L~L~~~~~~~ 296 (779)
-..+..+++|+.|++++|...+
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 1235678999999999986543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=74.01 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=39.3
Q ss_pred CCCCCcEEEecCCCCccCC---cccCCCCCccEEEEecCCCccCChhccCCC--CCCEEEcCCCCCCCcCC
Q 004022 352 GLSAMGLLHISDYAVREIP---QEIAYLSSLEILYLSGNNFESLPAIIKQMS--QLRFIHLEDFNMLQSLP 417 (779)
Q Consensus 352 ~l~~L~~L~Ls~~~l~~~p---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~Ls~n~~~~~~~ 417 (779)
.+++|+.|+|++|.++.++ ..+..+++|+.|+|++|+++.+. .+..+. +|++|+|++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 4566666666666666532 34456677777777777776552 223333 67777777777665544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00024 Score=71.61 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=25.8
Q ss_pred CccEEEecCcCCccc---CcccCCCCCccEEeeeCCCCCcccccccCCCC--CCcEEecccccCCc
Q 004022 189 KVTRLYLGQSAIEEV---PSSIECLTDLEVLDLRGCKRLKRISTSFCKLR--SLVTLILLGCLNLE 249 (779)
Q Consensus 189 ~L~~L~L~~n~i~~l---p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~--~L~~L~L~~~~~~~ 249 (779)
+|+.|+|++|.+..+ |..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|.+.+
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 344444444444332 23344555555555555554332 1122222 55555555555444
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.012 Score=52.28 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=42.5
Q ss_pred cEEEecCCCCc--cCCcccCCCCCccEEEEecCCCccCCh-hccCCCCCCEEEcCCCCC
Q 004022 357 GLLHISDYAVR--EIPQEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNM 412 (779)
Q Consensus 357 ~~L~Ls~~~l~--~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~~ 412 (779)
..++.+++.++ .+|..+ .++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36777788887 777643 2578999999999998884 578889999988888875
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.019 Score=50.80 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=40.0
Q ss_pred EEEccCCCCC--CCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC
Q 004022 95 YLHWDTYPLR--TLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS 156 (779)
Q Consensus 95 ~L~l~~n~l~--~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~ 156 (779)
.++.+++.++ .+|..+ ..+|++|+|++|+|+.+ -+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l-------~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTAL-------PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSC-------CTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCcc-------ChhhhhhccccCEEEecCCCe
Confidence 6777888887 888654 24688888888888875 334566788888888888764
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.017 Score=54.92 Aligned_cols=90 Identities=9% Similarity=-0.020 Sum_probs=47.4
Q ss_pred cCcccCCCCCccEEeeeCCCCCcc----cccccCCCCCCcEEecccccCCcc----cchhhhcCccCcEeecCCc---CC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLEH----FPEILEKMEHLKRIYSDRT---PI 271 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n---~i 271 (779)
+...+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.+... +.+.+..-+.|++|+|+++ .+
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 334445556666677766665422 222333455667777766665532 2334444556777777644 22
Q ss_pred C-----cCCccCCCCCCCCEEeccCC
Q 004022 272 T-----ELPSSFENLPGLEVLFVEDC 292 (779)
Q Consensus 272 ~-----~lp~~l~~l~~L~~L~L~~~ 292 (779)
. .+...+..-+.|+.|+++.+
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2 12233444566777776553
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.027 Score=53.58 Aligned_cols=83 Identities=10% Similarity=0.062 Sum_probs=44.4
Q ss_pred CccccCeeeccCC-CCCCcc---ChhhccCCCCCcEEEecCCCCcc-----CCcccCCCCCccEEEEecCCCc-----cC
Q 004022 327 LSNMLRSLDSSHC-KGLESF---PRTFLLGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFE-----SL 392 (779)
Q Consensus 327 ~l~~L~~L~l~~n-~~~~~~---~~~~~~~l~~L~~L~Ls~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~-----~l 392 (779)
.-+.|++|+++++ .+...- -...+..-..|+.|+|++|.+.+ +...+..-+.|++|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456777777765 433210 01113455667777777776665 2333444566666666666665 23
Q ss_pred ChhccCCCCCCEEEcCC
Q 004022 393 PAIIKQMSQLRFIHLED 409 (779)
Q Consensus 393 p~~l~~l~~L~~L~Ls~ 409 (779)
-..+..-+.|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 33444555566655543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 779 | ||||
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.001 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 5e-04 |
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 375 YLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKML 434
SLE L +S N LPA+ ++ +L FN L +PELP LK LH+ L
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLERLIA----SFNHLAEVPELPQNLKQLHVEYNP-L 336
Query: 435 QSLPVLPFCLESLDL 449
+ P +P +E L +
Sbjct: 337 REFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 53.3 bits (126), Expect = 5e-08
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 398 QMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRS 457
++ + N ++SL +LP L+ L++ + K L LP LP LE L N L
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLERLIA-SFNHLAE 318
Query: 458 LPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRN 493
+PELP L+ L++E LR P++P ++ L + +
Sbjct: 319 VPELPQNLKQLHVEYNP-LREFPDIPESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 52.9 bits (125), Expect = 6e-08
Identities = 53/323 (16%), Positives = 92/323 (28%), Gaps = 13/323 (4%)
Query: 189 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248
+ L L + +P LE L L + L+S + + L
Sbjct: 39 QAHELELNNLGLSSLPELPP---HLESLVASCN-SLTELPELPQSLKS-LLVDNNNLKAL 93
Query: 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYL 308
P +LE + + L G+ +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 309 YYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD-YAVR 367
+ S + + + L ++ YA
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 368 EIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLH 427
+ + + L +N+ + + Q + F+ L LP L
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 428 LIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQ 487
+ P LE L+++ N L LP LP L+ L N L +PELP L+
Sbjct: 274 NEIRSLCDLPP----SLEELNVSN-NKLIELPALPPRLERLIA-SFNHLAEVPELPQNLK 327
Query: 488 LLTVRNCNRLQSLPEILLCLQEL 510
L V N L+ P+I +++L
Sbjct: 328 QLHVEY-NPLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 7e-05
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 444 LESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEI 503
L+L L SLPELP L+ L CN L LPELP L+ L V N L++L ++
Sbjct: 40 AHELELNNLG-LSSLPELPPHLESLVA-SCNSLTELPELPQSLKSLLVD-NNNLKALSDL 96
Query: 504 LLCLQELDAS 513
L+ L S
Sbjct: 97 PPLLEYLGVS 106
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 3e-04
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 207 IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYS 266
+ LE L++ K L + +L L+ +L PE+ + +LK+++
Sbjct: 280 CDLPPSLEELNVSNNK-LIELPALPPRLERLI----ASFNHLAEVPELPQ---NLKQLHV 331
Query: 267 DRTPITELPSSFENLPGLEV 286
+ P+ E P E++ L +
Sbjct: 332 EYNPLREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE 390
L L+ S+ K L P + L S + E+P+ +L+ L++ N
Sbjct: 286 LEELNVSNNK-LIELPA----LPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLR 337
Query: 391 SLPAIIKQMSQLRF 404
P I + + LR
Sbjct: 338 EFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.0 bits (94), Expect = 5e-04
Identities = 63/324 (19%), Positives = 119/324 (36%), Gaps = 19/324 (5%)
Query: 196 GQSAIEEVPSSIECL-TDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI 254
G+ V +CL L+L L + L SLV C +L PE+
Sbjct: 22 GEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPELPPHLESLV----ASCNSLTELPEL 76
Query: 255 LEKMEHLKRIYSDRTPITELPSS-----FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLY 309
+ ++ L ++ +++LP N ++ +++ S L + + SL+ L
Sbjct: 77 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 136
Query: 310 YILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI 369
+ + I+ + + L++L ++ L L ++ + E
Sbjct: 137 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 196
Query: 370 PQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLI 429
E+ L L +Y N ++LP + + L ++ + L ++
Sbjct: 197 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 256
Query: 430 DCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLL 489
+ S N +RSL +LP L+ LN+ + N L LP LP L+ L
Sbjct: 257 SGLSELPPNLYYLNASS------NEIRSLCDLPPSLEELNVSN-NKLIELPALPPRLERL 309
Query: 490 TVRNCNRLQSLPEILLCLQELDAS 513
N L +PE+ L++L
Sbjct: 310 IASF-NHLAEVPELPQNLKQLHVE 332
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.9 bits (128), Expect = 3e-08
Identities = 36/259 (13%), Positives = 79/259 (30%), Gaps = 14/259 (5%)
Query: 246 LNLEHFPEILEKMEHLKRIYSDRTPITELP-SSFENLPGLEVLFVEDCSKLDNLPDNIGS 304
L LE P+ L + ITE+ F+NL L L + + P
Sbjct: 20 LGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77
Query: 305 LEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY 364
L L + + + + +LP + + + + + L + + L
Sbjct: 78 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137
Query: 365 AVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLK 424
+ + L + ++ N ++P + L +HL+ + + L
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 195
Query: 425 YLHLIDCK------MLQSLPVLPFCLESLDLTGCNMLRSLPEL--PLCLQYLNLEDCNML 476
L + + L L L +++ L +Q + L + N +
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNI 254
Query: 477 RSLPELPLCLQLLTVRNCN 495
++ C + +
Sbjct: 255 SAIGSNDFCPPGYNTKKAS 273
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 0.001
Identities = 42/273 (15%), Positives = 73/273 (26%), Gaps = 48/273 (17%)
Query: 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDY 88
LDL K + F N+ NL K +I P
Sbjct: 36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS------------------PGAFAP 77
Query: 89 LPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSA 148
L KL L+ L+ LP E + I +
Sbjct: 78 LV-KLERLYLSKNQLKELPEKM----------------PKTLQELRVHENEITKVRKSVF 120
Query: 149 LSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIE 208
+ + L F L + + I +P +
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI----------RIADTNITTIPQGL- 169
Query: 209 CLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 268
L L L G K K + S L +L L L L HL+ ++ +
Sbjct: 170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228
Query: 269 TPITELPSSFENLPGLEVLFVEDCSKLDNLPDN 301
+ ++P + ++V+++ + + + N
Sbjct: 229 NKLVKVPGGLADHKYIQVVYLHNN-NISAIGSN 260
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 33/190 (17%), Positives = 57/190 (30%), Gaps = 4/190 (2%)
Query: 200 IEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKME 259
+ +P + D +L L + L L L + + +
Sbjct: 22 LTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLP 77
Query: 260 HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS 319
L + + LP + LP L VL V + L L + + +
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 320 QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSL 379
LP + S L P L GL + L + + ++ IP+ L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 380 EILYLSGNNF 389
+L GN +
Sbjct: 198 PFAFLHGNPW 207
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 3e-05
Identities = 46/346 (13%), Positives = 105/346 (30%), Gaps = 17/346 (4%)
Query: 71 TEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWE 130
T Q ++ +G++YL L +++ L + LV++ + +++
Sbjct: 47 TTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 105
Query: 131 GE---KACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS 187
+ N R S+ ++ + + F
Sbjct: 106 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 165
Query: 188 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLN 247
+ L + SS + + L + L + + L L L L+
Sbjct: 166 TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 225
Query: 248 LEHF----PEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIG 303
L L + +L + I+ L L L L + +++ N+ G
Sbjct: 226 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL-GANQISNISPLAG 283
Query: 304 SLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISD 363
L P S + +L ++ + L+ + L ++
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-----SLTKLQRLFFAN 338
Query: 364 YAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 409
V ++ +A L+++ L N L + ++++ + L D
Sbjct: 339 NKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 382
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 43.6 bits (101), Expect = 6e-05
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 368 EIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLC 422
+PQ + L L L +S NN + + + L P LP C
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP-LPAC 312
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 11/267 (4%)
Query: 216 LDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITE-- 273
LDL G L T + ++ + E ++ + + I
Sbjct: 5 LDLTGKN-LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62
Query: 274 LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRS 333
L L+ L +E D + + + L + + + + L +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 334 LDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP 393
LD + F + A I+ + + + ++ N
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 394 AIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCN 453
+ + F N LQ L L + I + L L +P L++L + G
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHL-----SLSRCYDIIPETLLELGEIP-TLKTLQVFGIV 236
Query: 454 MLRSLPELPLCLQYLNLEDCNMLRSLP 480
+L L L +L + +C+ ++
Sbjct: 237 PDGTLQLLKEALPHLQI-NCSHFTTIA 262
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 6/154 (3%)
Query: 358 LLHISDYAVREIPQEIAYLSSLEILYLSGNNF-----ESLPAIIKQMSQLRFIHLEDFNM 412
L I+ + + + S++ + LSGN L I L D
Sbjct: 12 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71
Query: 413 LQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLED 472
+ E+P L+ L K L + + T L L++L L +
Sbjct: 72 GRVKDEIPEALRLLLQALLK-CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 130
Query: 473 CNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLC 506
+ N + P +
Sbjct: 131 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 164
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 779 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.91 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.89 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.88 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.87 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.86 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.85 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.84 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.83 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.8 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.79 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.78 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.61 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.59 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.55 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.54 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.48 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.41 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.39 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.36 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.35 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.35 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.29 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.28 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.21 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.18 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.14 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.07 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.94 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.93 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.86 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.7 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.7 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.57 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.37 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.92 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.17 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 94.28 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.91 E-value=1.4e-23 Score=226.59 Aligned_cols=320 Identities=15% Similarity=0.168 Sum_probs=199.4
Q ss_pred hcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCC
Q 004022 45 TNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSK 124 (779)
Q Consensus 45 ~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~ 124 (779)
+.+.+|+.|+++++.|+ .+ +++..+ ++|++|++++|+++.+|..-++++|++|++++|+
T Consensus 41 ~~l~~l~~L~l~~~~I~-------------------~l-~gl~~L-~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~ 99 (384)
T d2omza2 41 TDLDQVTTLQADRLGIK-------------------SI-DGVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 99 (384)
T ss_dssp HHHTTCCEEECCSSCCC-------------------CC-TTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred HHhCCCCEEECCCCCCC-------------------Cc-cccccC-CCCCEEeCcCCcCCCCccccCCcccccccccccc
Confidence 45778999999999884 33 356677 5999999999999999874489999999999999
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCc------------------
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQI------------------ 186 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~------------------ 186 (779)
|+.+ + .++++++|+.|+++++.. ..++.......+..+....+......+..
T Consensus 100 i~~i--------~-~l~~l~~L~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (384)
T d2omza2 100 IADI--------T-PLANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK 169 (384)
T ss_dssp CCCC--------G-GGTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG
T ss_pred cccc--------c-cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 9873 2 377999999999998874 44444444555555555443321111100
Q ss_pred ----CCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCc
Q 004022 187 ----SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLK 262 (779)
Q Consensus 187 ----~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 262 (779)
...........+. .........+++++.+++++|.+.+..| ....++|++|++++|.+.. + ..+..+++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 244 (384)
T d2omza2 170 PLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLT 244 (384)
T ss_dssp GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCS
T ss_pred hhccccccccccccccc-cccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccc
Confidence 0011112222222 2223345667788888888877555433 4556788888888876544 2 3567778888
Q ss_pred EeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCC
Q 004022 263 RIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGL 342 (779)
Q Consensus 263 ~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~ 342 (779)
.|++++|.++.++. ++.+++|+.|+++++.+.+.. .+..++.++.+.+..|.+.
T Consensus 245 ~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~-------------------------~~~~~~~l~~l~~~~n~l~ 298 (384)
T d2omza2 245 DLDLANNQISNLAP-LSGLTKLTELKLGANQISNIS-------------------------PLAGLTALTNLELNENQLE 298 (384)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-------------------------GGTTCTTCSEEECCSSCCS
T ss_pred hhccccCccCCCCc-ccccccCCEeeccCcccCCCC-------------------------ccccccccccccccccccc
Confidence 88888888877764 677788888888776654321 1334455555555555554
Q ss_pred CccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCC-CCCC
Q 004022 343 ESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP-ELPL 421 (779)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~-~~~~ 421 (779)
+... +..+++++.|++++|++++++. +..+++|++|++++|+++.++ .++.+++|++|++++|++.+..| ..++
T Consensus 299 ~~~~---~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~ 373 (384)
T d2omza2 299 DISP---ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLT 373 (384)
T ss_dssp CCGG---GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred cccc---cchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChhhccCC
Confidence 4221 3355556666666666655432 455566666666666665554 35556666666666665544332 1235
Q ss_pred CccEEEEecC
Q 004022 422 CLKYLHLIDC 431 (779)
Q Consensus 422 ~L~~L~l~~c 431 (779)
+|+.|+|++|
T Consensus 374 ~L~~L~L~~N 383 (384)
T d2omza2 374 RITQLGLNDQ 383 (384)
T ss_dssp TCSEEECCCE
T ss_pred CCCEeeCCCC
Confidence 5666666554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.89 E-value=2.4e-22 Score=216.75 Aligned_cols=314 Identities=17% Similarity=0.207 Sum_probs=235.7
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.+|++|+++++.+++++..-.+++|++|++++|+|+.+ | .++++++|++|++++|++ ..++.+.++++|+
T Consensus 44 ~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l--------~-~l~~L~~L~~L~L~~n~i-~~i~~l~~l~~L~ 113 (384)
T d2omza2 44 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--------T-PLKNLTKLVDILMNNNQI-ADITPLANLTNLT 113 (384)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCC--------G-GGTTCTTCCEEECCSSCC-CCCGGGTTCTTCC
T ss_pred CCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCC--------c-cccCCccccccccccccc-ccccccccccccc
Confidence 48999999999999996444899999999999999974 4 388999999999999984 5667788999999
Q ss_pred EEEecCCcCccccCC-cCCCccEEEecCcCCcccCc--------------------ccCCCCCccEEeeeCCCCCccccc
Q 004022 171 TINFSYCVNLIEFPQ-ISGKVTRLYLGQSAIEEVPS--------------------SIECLTDLEVLDLRGCKRLKRIST 229 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~-~~~~L~~L~L~~n~i~~lp~--------------------~l~~l~~L~~L~L~~~~~~~~lp~ 229 (779)
.|+++++......+. ....+..+....+.+..+.. .+...+.........+.. ....
T Consensus 114 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 191 (384)
T d2omza2 114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDIS 191 (384)
T ss_dssp EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC--CCCG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc--cccc
Confidence 999998876543222 22345555555444432221 122233333333333322 2233
Q ss_pred ccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHH
Q 004022 230 SFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLY 309 (779)
Q Consensus 230 ~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 309 (779)
....+++++.+.+++|...+..| ...+++|++|++++|.++.++ .+..+++|+.|++++|.+.+.
T Consensus 192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~------------ 256 (384)
T d2omza2 192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL------------ 256 (384)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC------------
T ss_pred ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCC------------
Confidence 45668889999999887666544 456788999999999988875 477889999999988765432
Q ss_pred HHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCC
Q 004022 310 YILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNF 389 (779)
Q Consensus 310 ~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l 389 (779)
+ .+..+++|++|+++++.+....+ +..++.++.+.++.|.+..++ .+..+++++.|++++|++
T Consensus 257 ------------~-~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l 319 (384)
T d2omza2 257 ------------A-PLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNI 319 (384)
T ss_dssp ------------G-GGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCC
T ss_pred ------------C-cccccccCCEeeccCcccCCCCc---ccccccccccccccccccccc-ccchhcccCeEECCCCCC
Confidence 1 25678899999999999876544 568899999999999998865 477889999999999999
Q ss_pred ccCChhccCCCCCCEEEcCCCCCCCcCCC--CCCCccEEEEecCCCCCCCC---CCCCCccEEEeeCC
Q 004022 390 ESLPAIIKQMSQLRFIHLEDFNMLQSLPE--LPLCLKYLHLIDCKMLQSLP---VLPFCLESLDLTGC 452 (779)
Q Consensus 390 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~--~~~~L~~L~l~~c~~l~~lp---~l~~~L~~L~ls~n 452 (779)
+.++. +..+++|++|++++|++.. ++. ..++|++|++++|+ ++.++ .++ +|++|+|++|
T Consensus 320 ~~l~~-l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~-l~~l~~l~~l~-~L~~L~L~~N 383 (384)
T d2omza2 320 SDISP-VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQ-ISDLTPLANLT-RITQLGLNDQ 383 (384)
T ss_dssp SCCGG-GGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSC-CCBCGGGTTCT-TCSEEECCCE
T ss_pred CCCcc-cccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCc-CCCChhhccCC-CCCEeeCCCC
Confidence 98874 8899999999999997754 333 35899999999986 44544 344 8999999986
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=3.5e-21 Score=200.79 Aligned_cols=265 Identities=18% Similarity=0.183 Sum_probs=183.6
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCc
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPV 170 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~ 170 (779)
.++.++.+++.++++|..+ ++++++|+|++|+|+.+ .+.+|.++++|++|++++|.+....|. +.++++|+
T Consensus 11 ~~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l-------~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~ 82 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEI-------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82 (305)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCB-------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred cCCEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCc-------ChhHhhccccccccccccccccccchhhhhCCCccC
Confidence 5778889998899998876 36899999999999884 234688889999999999886655554 55688888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC--
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL-- 248 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~-- 248 (779)
.|++++|+. +.+|..+ ...++.|.+.+|.+....+..+.....++.+....+...
T Consensus 83 ~L~l~~n~l---------------------~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~ 139 (305)
T d1xkua_ 83 RLYLSKNQL---------------------KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139 (305)
T ss_dssp EEECCSSCC---------------------SBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred EecccCCcc---------------------CcCccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccccc
Confidence 888888764 3333322 234555555555444333333444455555555544322
Q ss_pred cccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCc
Q 004022 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALS 328 (779)
Q Consensus 249 ~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l 328 (779)
...+..+..+++|+.+++++|.+..+|..+ +++|+.|++++|...... +..+..+
T Consensus 140 ~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~-----------------------~~~~~~~ 194 (305)
T d1xkua_ 140 GIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVD-----------------------AASLKGL 194 (305)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEEC-----------------------TGGGTTC
T ss_pred CCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCC-----------------------hhHhhcc
Confidence 233445667777888888888887777653 578888888877654433 3345566
Q ss_pred cccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCCh-------hccCCCC
Q 004022 329 NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-------IIKQMSQ 401 (779)
Q Consensus 329 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-------~l~~l~~ 401 (779)
+.++.|++++|.+....+. .+.++++|++|+|++|.++.+|.++..+++|++|+|++|+++.++. ....+++
T Consensus 195 ~~l~~L~~s~n~l~~~~~~-~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~ 273 (305)
T d1xkua_ 195 NNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273 (305)
T ss_dssp TTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred ccccccccccccccccccc-cccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCC
Confidence 7778888888877665443 3567888888888888888888888888888999998888887753 2345677
Q ss_pred CCEEEcCCCCCC
Q 004022 402 LRFIHLEDFNML 413 (779)
Q Consensus 402 L~~L~Ls~n~~~ 413 (779)
|+.|+|++|++.
T Consensus 274 L~~L~L~~N~~~ 285 (305)
T d1xkua_ 274 YSGVSLFSNPVQ 285 (305)
T ss_dssp CSEEECCSSSSC
T ss_pred CCEEECCCCcCc
Confidence 888888887763
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.87 E-value=2.6e-23 Score=218.04 Aligned_cols=248 Identities=16% Similarity=0.165 Sum_probs=131.3
Q ss_pred CCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccC-CCCCCCCCC-CCCCCCCcEEEecCCcCccccCCcCCCc
Q 004022 113 KNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKG-CQSLRSFPS-NLHFVCPVTINFSYCVNLIEFPQISGKV 190 (779)
Q Consensus 113 ~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~-n~~l~~~p~-~~~l~~L~~L~L~~~~~l~~~~~~~~~L 190 (779)
.+++.|+|+++.++.. +. +|++++++++|++|+|++ |.+.+.+|. +.++++|++|++++|...
T Consensus 50 ~~v~~L~L~~~~l~g~--~~---lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~---------- 114 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKP--YP---IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---------- 114 (313)
T ss_dssp CCEEEEEEECCCCSSC--EE---CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE----------
T ss_pred EEEEEEECCCCCCCCC--CC---CChHHhcCccccccccccccccccccccccccccccchhhhcccccc----------
Confidence 4677788888777642 11 677777788888877776 444444543 334555555555554432
Q ss_pred cEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccC-cEeecCCc
Q 004022 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHL-KRIYSDRT 269 (779)
Q Consensus 191 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L-~~L~L~~n 269 (779)
...+..+..+.+|+.+++++|.....+|..+.+++.|+.+++++|...+.+|..+..+..+ +.+++++|
T Consensus 115 ----------~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n 184 (313)
T d1ogqa_ 115 ----------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp ----------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred ----------ccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccc
Confidence 2223334455555555555555555555555555555555555555555555555554443 44555555
Q ss_pred CCCcC-CccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChh
Q 004022 270 PITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 348 (779)
Q Consensus 270 ~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~ 348 (779)
.++.. |..+..+..+ .+++..+...+ .+|..+..+++++.+++++|.+...++.
T Consensus 185 ~l~~~~~~~~~~l~~~-~l~l~~~~~~~-----------------------~~~~~~~~~~~l~~l~~~~~~l~~~~~~- 239 (313)
T d1ogqa_ 185 RLTGKIPPTFANLNLA-FVDLSRNMLEG-----------------------DASVLFGSDKNTQKIHLAKNSLAFDLGK- 239 (313)
T ss_dssp EEEEECCGGGGGCCCS-EEECCSSEEEE-----------------------CCGGGCCTTSCCSEEECCSSEECCBGGG-
T ss_pred cccccccccccccccc-ccccccccccc-----------------------cccccccccccccccccccccccccccc-
Confidence 55422 2223333222 34444433222 2333344455566666666655544432
Q ss_pred hccCCCCCcEEEecCCCCcc-CCcccCCCCCccEEEEecCCCc-cCChhccCCCCCCEEEcCCCCC
Q 004022 349 FLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNM 412 (779)
Q Consensus 349 ~~~~l~~L~~L~Ls~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~ 412 (779)
+..+++|+.|++++|++++ +|..++.+++|++|+|++|+++ .+|. ++++++|+.+++++|+.
T Consensus 240 -~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred -cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence 3345555566666555553 5555555555666666555555 4443 34555555555555543
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.86 E-value=4.4e-23 Score=216.26 Aligned_cols=245 Identities=20% Similarity=0.225 Sum_probs=182.1
Q ss_pred ccEEEecCcCCc---ccCcccCCCCCccEEeeeC-CCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEee
Q 004022 190 VTRLYLGQSAIE---EVPSSIECLTDLEVLDLRG-CKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY 265 (779)
Q Consensus 190 L~~L~L~~n~i~---~lp~~l~~l~~L~~L~L~~-~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 265 (779)
++.|+|+++.+. .+|..++++++|++|+|++ |.+.+.+|..++++++|++|+|++|.+.+..+..+..+.+|+.++
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~ 131 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence 444444444443 5777888888888888876 566667787788888888888888877777777777888888888
Q ss_pred cCCcCCC-cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHH-H-HhhcccCCcCCccccCccccCeeeccCCCCC
Q 004022 266 SDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY-I-LAAASAISQLPSSVALSNMLRSLDSSHCKGL 342 (779)
Q Consensus 266 L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~-~-~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~ 342 (779)
+++|.+. .+|..+..++.|+.+++++|.+.+.+|..+..+..+.. . ...+...+..|..+..+. +..++++.+...
T Consensus 132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~ 210 (313)
T d1ogqa_ 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 8877766 56777888888888888888777777777776666643 2 333333344555555554 446888888877
Q ss_pred CccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCc-cCChhccCCCCCCEEEcCCCCCCCcCCCC--
Q 004022 343 ESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNMLQSLPEL-- 419 (779)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~-- 419 (779)
+..+.. ...+++++.+++++|.+...+..+..+++|+.|+|++|+++ .+|..++++++|++|+|++|++.+.+|+.
T Consensus 211 ~~~~~~-~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~ 289 (313)
T d1ogqa_ 211 GDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp ECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCccc
Confidence 766654 56789999999999998887777888999999999999999 89999999999999999999998888864
Q ss_pred CCCccEEEEecCCCCCC
Q 004022 420 PLCLKYLHLIDCKMLQS 436 (779)
Q Consensus 420 ~~~L~~L~l~~c~~l~~ 436 (779)
+.+|+.+++.+|+.+..
T Consensus 290 L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 290 LQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGSCGGGTCSSSEEES
T ss_pred CCCCCHHHhCCCccccC
Confidence 34566666666654443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.85 E-value=6.6e-19 Score=186.89 Aligned_cols=313 Identities=24% Similarity=0.259 Sum_probs=189.2
Q ss_pred cCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCC
Q 004022 48 SNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQ 127 (779)
Q Consensus 48 ~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~ 127 (779)
.+|+.|+++++.++ .+|+. +++|++|++++|.++++|.. +.+|++|++++|+++.
T Consensus 38 ~~l~~LdLs~~~L~-------------------~lp~~----~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~ 92 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-------------------SLPEL----PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA 92 (353)
T ss_dssp HTCSEEECTTSCCS-------------------CCCSC----CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC
T ss_pred cCCCEEEeCCCCCC-------------------CCCCC----CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccch
Confidence 47999999999884 56642 35899999999999999976 4689999999999987
Q ss_pred ccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCccc
Q 004022 128 PWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSI 207 (779)
Q Consensus 128 l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l 207 (779)
+ +. -.+.|++|++++|. +..+|....+++|+.|++++|.. ...+.....+..+.+..+..... ..+
T Consensus 93 l--------~~---lp~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~-~~l 158 (353)
T d1jl5a_ 93 L--------SD---LPPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAAGNNQLEEL-PEL 158 (353)
T ss_dssp C--------CS---CCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSC-CCC
T ss_pred h--------hh---hccccccccccccc-cccccchhhhccceeeccccccc-cccccccccccchhhcccccccc-ccc
Confidence 4 21 12469999999998 56788888899999999998865 45556666777777766655432 345
Q ss_pred CCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEE
Q 004022 208 ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVL 287 (779)
Q Consensus 208 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 287 (779)
+.++.++.|.+.+|..... +.. ....+.+...++ ....++. +..++.|+.+++++|....++.. ..++..+
T Consensus 159 ~~l~~l~~L~l~~n~~~~~-~~~---~~~~~~l~~~~~-~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~~---~~~l~~~ 229 (353)
T d1jl5a_ 159 QNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEAL 229 (353)
T ss_dssp TTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEE
T ss_pred cccccceeccccccccccc-ccc---cccccccccccc-ccccccc-ccccccccccccccccccccccc---ccccccc
Confidence 6677778888777664332 211 222334444332 2223332 44566777777777766655543 3445555
Q ss_pred eccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCc
Q 004022 288 FVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR 367 (779)
Q Consensus 288 ~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~ 367 (779)
.+.++..... +. ..+.+...++..+...+.. .........++..+.+.
T Consensus 230 ~~~~~~~~~~-~~--------------------------~~~~l~~~~~~~~~~~~l~-----~l~~~~~~~~~~~~~~~ 277 (353)
T d1jl5a_ 230 NVRDNYLTDL-PE--------------------------LPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIR 277 (353)
T ss_dssp ECCSSCCSCC-CC--------------------------CCTTCCEEECCSSCCSEES-----CCCTTCCEEECCSSCCS
T ss_pred cccccccccc-cc--------------------------ccccccccccccccccccc-----cccchhcccccccCccc
Confidence 5555433211 11 1122333333333222110 01123344445555444
Q ss_pred cCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCCCcCCCCCCCccEEEEecCCCCCCCCCCCCCccEE
Q 004022 368 EIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESL 447 (779)
Q Consensus 368 ~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~L~~L~l~~c~~l~~lp~l~~~L~~L 447 (779)
.++ ..+++|++|+|++|+++.+|. .+++|+.|++++|.+. .+|..+.+|++|++++|+ ++.+|.+|.+|+.|
T Consensus 278 ~~~---~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~-~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L 349 (353)
T d1jl5a_ 278 SLC---DLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLA-EVPELPQNLKQLHVEYNP-LREFPDIPESVEDL 349 (353)
T ss_dssp EEC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEE
T ss_pred ccc---ccCCCCCEEECCCCccCcccc---ccCCCCEEECCCCcCC-ccccccCCCCEEECcCCc-CCCCCccccccCee
Confidence 433 234567777777777776664 2456666666666543 455555566666666664 55666666444444
Q ss_pred E
Q 004022 448 D 448 (779)
Q Consensus 448 ~ 448 (779)
.
T Consensus 350 ~ 350 (353)
T d1jl5a_ 350 R 350 (353)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.84 E-value=1e-18 Score=185.43 Aligned_cols=314 Identities=23% Similarity=0.303 Sum_probs=161.1
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.+|++|+++++.++.+|.. +++|++|+|++|+|+. +|+. +.+|+.|++++|.+ +.++.+
T Consensus 38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~--------lp~~---~~~L~~L~l~~n~l-~~l~~l------- 96 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTE--------LPEL---PQSLKSLLVDNNNL-KALSDL------- 96 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSS--------CCCC---CTTCCEEECCSSCC-SCCCSC-------
T ss_pred cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcc--------cccc---hhhhhhhhhhhccc-chhhhh-------
Confidence 4788999999999999864 5689999999999887 5543 45778888888763 333321
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
...|++|++++|.+..+|. ++.+++|+.|++++|..... +. ....+..+.+..+....
T Consensus 97 ----------------p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~- 154 (353)
T d1jl5a_ 97 ----------------PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE- 154 (353)
T ss_dssp ----------------CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-
T ss_pred ----------------ccccccccccccccccccc-hhhhccceeecccccccccc-cc---ccccccchhhccccccc-
Confidence 1234455555555566664 56777888888877764432 22 13455566655443322
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccc
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 330 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~ 330 (779)
...+..++.++.++++++....++... ...+.+...++. . ..++ ....++.
T Consensus 155 -~~~l~~l~~l~~L~l~~n~~~~~~~~~---~~~~~l~~~~~~-~-----------------------~~~~-~~~~l~~ 205 (353)
T d1jl5a_ 155 -LPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-L-----------------------EELP-ELQNLPF 205 (353)
T ss_dssp -CCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-C-----------------------SSCC-CCTTCTT
T ss_pred -cccccccccceeccccccccccccccc---cccccccccccc-c-----------------------cccc-ccccccc
Confidence 233455666666766666665554321 122233332211 1 1111 1334555
Q ss_pred cCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCC
Q 004022 331 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 331 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 410 (779)
|+.+++++|...... ....++..+.+.++.+...+.. ...+...++..+.+..++.. .......++..+
T Consensus 206 L~~l~l~~n~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~l~~l---~~~~~~~~~~~~ 274 (353)
T d1jl5a_ 206 LTTIYADNNLLKTLP-----DLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSN 274 (353)
T ss_dssp CCEEECCSSCCSSCC-----SCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSS
T ss_pred ccccccccccccccc-----cccccccccccccccccccccc---cccccccccccccccccccc---cchhcccccccC
Confidence 666666665543321 1344555566665555443322 23444444444443332211 112233333333
Q ss_pred CCCCcCCCCCCCccEEEEecCCCCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCccEEeeecCcCCcccCCCCCCccEEE
Q 004022 411 NMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLT 490 (779)
Q Consensus 411 ~~~~~~~~~~~~L~~L~l~~c~~l~~lp~l~~~L~~L~ls~n~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~sL~~L~ 490 (779)
.+. .++..+++|++|++++|+ +..+|....+|+.|++++|.+. .+|+.+++|++|++++|+ ++.+|+.+.+|+.|+
T Consensus 275 ~~~-~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~L~-~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~ 350 (353)
T d1jl5a_ 275 EIR-SLCDLPPSLEELNVSNNK-LIELPALPPRLERLIASFNHLA-EVPELPQNLKQLHVEYNP-LREFPDIPESVEDLR 350 (353)
T ss_dssp CCS-EECCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred ccc-cccccCCCCCEEECCCCc-cCccccccCCCCEEECCCCcCC-ccccccCCCCEEECcCCc-CCCCCccccccCeeE
Confidence 222 223334445555555542 3344443334555555444432 344444455555555543 455555544555544
Q ss_pred E
Q 004022 491 V 491 (779)
Q Consensus 491 i 491 (779)
+
T Consensus 351 ~ 351 (353)
T d1jl5a_ 351 M 351 (353)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.83 E-value=4e-19 Score=185.00 Aligned_cols=242 Identities=14% Similarity=0.130 Sum_probs=108.2
Q ss_pred CCceEEEccCCCCCCCCC-CC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCC
Q 004022 91 KKLRYLHWDTYPLRTLPS-NF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVC 168 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~ 168 (779)
+++++|++++|+++.+|. .| ++++|++|++++|.+..+ .|.+|.++++|++|++++|+ ++.+|.. ....
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-------~~~~f~~l~~L~~L~l~~n~-l~~l~~~-~~~~ 101 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-------SPGAFAPLVKLERLYLSKNQ-LKELPEK-MPKT 101 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-------CTTTTTTCTTCCEEECCSSC-CSBCCSS-CCTT
T ss_pred CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-------chhhhhCCCccCEecccCCc-cCcCccc-hhhh
Confidence 345555555555555543 23 445555555555554443 33344455555555555554 2233321 1234
Q ss_pred CcEEEecCCcCccccC---CcCCCccEEEecCcCCcc---cCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEec
Q 004022 169 PVTINFSYCVNLIEFP---QISGKVTRLYLGQSAIEE---VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLIL 242 (779)
Q Consensus 169 L~~L~L~~~~~l~~~~---~~~~~L~~L~L~~n~i~~---lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 242 (779)
++.|.+.+|......+ .....+..++...+.... .+..+..+++|+.+++++|.+. .+|..+ +++|++|++
T Consensus 102 l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l 178 (305)
T d1xkua_ 102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHL 178 (305)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEEC
T ss_pred hhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEEC
Confidence 4444444443322111 112233344444333221 1223444455555555554432 222221 345555555
Q ss_pred ccccCCcccchhhhcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcC
Q 004022 243 LGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQL 321 (779)
Q Consensus 243 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~l 321 (779)
++|......+..+..++.++.|++++|.++.++. .+..+++|++|+|++|++. .+
T Consensus 179 ~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~------------------------~l 234 (305)
T d1xkua_ 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------------------------KV 234 (305)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS------------------------SC
T ss_pred CCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc------------------------cc
Confidence 5555554445555555555555555555554432 3445555555555554321 12
Q ss_pred CccccCccccCeeeccCCCCCCccCh-----hhccCCCCCcEEEecCCCCcc
Q 004022 322 PSSVALSNMLRSLDSSHCKGLESFPR-----TFLLGLSAMGLLHISDYAVRE 368 (779)
Q Consensus 322 p~~l~~l~~L~~L~l~~n~~~~~~~~-----~~~~~l~~L~~L~Ls~~~l~~ 368 (779)
|..+..+++|++|++++|++...... .......+|+.|++++|.+..
T Consensus 235 p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~ 286 (305)
T d1xkua_ 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286 (305)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence 22333444555555555544432111 112345667777777776653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.2e-19 Score=178.62 Aligned_cols=195 Identities=17% Similarity=0.157 Sum_probs=149.3
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcE
Q 004022 92 KLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 171 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~ 171 (779)
.+..++.+++.++++|..+. ++|++|+|++|+|+.+ .+.+|.++++|++|+|++|+ ++.+|.+..+++|++
T Consensus 11 ~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l-------~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~ 81 (266)
T d1p9ag_ 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTF-------SLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGT 81 (266)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEE-------EGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCE
T ss_pred CCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCc-------CHHHhhcccccccccccccc-ccccccccccccccc
Confidence 44556777777777776552 5677777777777764 33456677777777777776 445666666777777
Q ss_pred EEecCCcCccc--cCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCC
Q 004022 172 INFSYCVNLIE--FPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNL 248 (779)
Q Consensus 172 L~L~~~~~l~~--~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 248 (779)
|++++|+.... ....+.+|+.|+++++.+..++. .+..+.++++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 82 L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~ 161 (266)
T d1p9ag_ 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (266)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred cccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence 77777754332 12234567777777777777665 5677899999999999877766677788999999999999988
Q ss_pred cccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccCCCCC
Q 004022 249 EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 295 (779)
Q Consensus 249 ~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 295 (779)
+..++.+..+++|++|+|++|.++.+|.++..+++|+.|+|++|+..
T Consensus 162 ~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 88888899999999999999999999999999999999999998653
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.8e-19 Score=183.07 Aligned_cols=221 Identities=16% Similarity=0.152 Sum_probs=123.5
Q ss_pred EEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcEEE
Q 004022 95 YLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVTIN 173 (779)
Q Consensus 95 ~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~L~ 173 (779)
.++.++..++++|..+. .++++|+|++|+|+.+ -+.+|.++++|++|++++|.+....+. +.++..++.+.
T Consensus 15 ~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~~i-------~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~ 86 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHV-------PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (284)
T ss_dssp EEECCSSCCSSCCTTCC-TTCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEEcCCCCCCccCCCCC-CCCCEEECcCCcCCCC-------CHHHhhccccccccccccccccccccccccccccccccc
Confidence 34556666777776542 5567777777777764 234566777777777777764333222 33355666665
Q ss_pred ecCCcCccccCCcCCCccEEEecCcCCccc-CcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccc
Q 004022 174 FSYCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFP 252 (779)
Q Consensus 174 L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 252 (779)
...+... ..+ +..+.++++|++|++++|......+..+....+|+.+++++|.+.+..+
T Consensus 87 ~~~~~~~--------------------~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~ 146 (284)
T d1ozna_ 87 LSDNAQL--------------------RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (284)
T ss_dssp CCSCTTC--------------------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccccc--------------------ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh
Confidence 5444333 223 3345556666666666665544444445555666666666665554445
Q ss_pred hhhhcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCcccc
Q 004022 253 EILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNML 331 (779)
Q Consensus 253 ~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L 331 (779)
..+..+++|+.|++++|.++.++. .+..+++|+.+++++|.+.+..|. .+..+++|
T Consensus 147 ~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~-----------------------~f~~l~~L 203 (284)
T d1ozna_ 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-----------------------AFRDLGRL 203 (284)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----------------------TTTTCTTC
T ss_pred hHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChh-----------------------Hhhhhhhc
Confidence 555566666666666666665543 355566666666666554433322 23344555
Q ss_pred CeeeccCCCCCCccChhhccCCCCCcEEEecCCCCc
Q 004022 332 RSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR 367 (779)
Q Consensus 332 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~ 367 (779)
++|++++|.+.+..+.. +..+++|+.|++++|.+.
T Consensus 204 ~~L~l~~N~i~~~~~~~-~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 204 MTLYLFANNLSALPTEA-LAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp CEEECCSSCCSCCCHHH-HTTCTTCCEEECCSSCEE
T ss_pred ccccccccccccccccc-cccccccCEEEecCCCCC
Confidence 55555555554433322 445566666666665544
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.6e-18 Score=178.41 Aligned_cols=207 Identities=20% Similarity=0.255 Sum_probs=177.0
Q ss_pred eecCCCCCCCCCCceEEEccCCCCCCCCCC-C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCC
Q 004022 80 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSL 157 (779)
Q Consensus 80 ~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l 157 (779)
..+|.. +|..+++|++++|+++.+|.. | ++++|++|++++|++..+ .+..+..+..++.++...+...
T Consensus 24 ~~iP~~---ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-------~~~~~~~~~~~~~l~~~~~~~~ 93 (284)
T d1ozna_ 24 QAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-------DAAAFTGLALLEQLDLSDNAQL 93 (284)
T ss_dssp SSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSCTTC
T ss_pred CccCCC---CCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-------cccccccccccccccccccccc
Confidence 466654 456899999999999999975 5 899999999999999886 5566778899999988776666
Q ss_pred CCCCC--CCCCCCCcEEEecCCcCccccCC---cCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCccccccc
Q 004022 158 RSFPS--NLHFVCPVTINFSYCVNLIEFPQ---ISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSF 231 (779)
Q Consensus 158 ~~~p~--~~~l~~L~~L~L~~~~~l~~~~~---~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l 231 (779)
+.++. +.++++|++|++++|......+. ...+|+.+++++|.++.+|. .+..+++|+.|++++|.+....+..+
T Consensus 94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f 173 (284)
T d1ozna_ 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (284)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhh
Confidence 66654 66799999999999986543332 34579999999999999975 67789999999999999877777788
Q ss_pred CCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCc-cCCCCCCCCEEeccCCCCCC
Q 004022 232 CKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS-SFENLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 232 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~ 296 (779)
.++++|+++++++|.+.+..|..+..+++|++|++++|.+..++. .++.+++|+.|++++|+...
T Consensus 174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 999999999999999999889999999999999999999998876 58999999999999987654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=6.6e-18 Score=171.83 Aligned_cols=193 Identities=17% Similarity=0.139 Sum_probs=131.0
Q ss_pred EEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCC
Q 004022 193 LYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT 272 (779)
Q Consensus 193 L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~ 272 (779)
.+-+++.++++|..+. ++|++|+|++|++.+..+..|.++++|++|+|++|.+. .++ .++.+++|++|++++|+++
T Consensus 15 v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~ 90 (266)
T d1p9ag_ 15 VNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ 90 (266)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS
T ss_pred EEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc
Confidence 3444444455555443 35666666666554444445666666666666666543 233 2355667777777777777
Q ss_pred cCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccC
Q 004022 273 ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLG 352 (779)
Q Consensus 273 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 352 (779)
..+..+..+++|+.|++++|......+ ..+..+.+++.|++++|.+....+. .+..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~~~~~~~~~-----------------------~~~~~l~~l~~L~l~~n~l~~l~~~-~~~~ 146 (266)
T d1p9ag_ 91 SLPLLGQTLPALTVLDVSFNRLTSLPL-----------------------GALRGLGELQELYLKGNELKTLPPG-LLTP 146 (266)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCS-----------------------STTTTCTTCCEEECTTSCCCCCCTT-TTTT
T ss_pred ccccccccccccccccccccccceeec-----------------------cccccccccccccccccccceeccc-cccc
Confidence 777777777777777777765443222 2234566677777777776654443 3567
Q ss_pred CCCCcEEEecCCCCccCC-cccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcCCCCCC
Q 004022 353 LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 413 (779)
Q Consensus 353 l~~L~~L~Ls~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~~~ 413 (779)
+++|+.|++++|+++.++ ..+..+++|++|+|++|+++.+|..+..+++|+.|+|++|+..
T Consensus 147 l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 888999999999998865 4578899999999999999999988888999999888888753
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1e-15 Score=151.33 Aligned_cols=190 Identities=14% Similarity=0.216 Sum_probs=118.8
Q ss_pred hhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCC
Q 004022 44 FTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCS 123 (779)
Q Consensus 44 f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n 123 (779)
++.+.+|+.|++.+|.++ .+ +++..+ ++|++|++++|.++.++....+++|+++++++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-------------------~l-~~l~~l-~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n 95 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVT-------------------TI-EGVQYL-NNLIGLELKDNQITDLAPLKNLTKITELELSGN 95 (227)
T ss_dssp HHHHHTCCEEECTTSCCC-------------------CC-TTGGGC-TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC
T ss_pred HHHcCCcCEEECCCCCCC-------------------cc-hhHhcC-CCCcEeecCCceeeccccccccccccccccccc
Confidence 445556666666666553 23 234444 366666666666655554335556666666666
Q ss_pred CCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCccc
Q 004022 124 KVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEV 203 (779)
Q Consensus 124 ~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~l 203 (779)
.++.+ +.+..+++|+.++++++.. ..++.+...+.++.+.++++ .+...
T Consensus 96 ~~~~i---------~~l~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~~l~~~~~---------------------~~~~~ 144 (227)
T d1h6ua2 96 PLKNV---------SAIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLN---------------------QITNI 144 (227)
T ss_dssp CCSCC---------GGGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSS---------------------CCCCC
T ss_pred ccccc---------ccccccccccccccccccc-cccchhccccchhhhhchhh---------------------hhchh
Confidence 55542 2344555666666655542 23333344445555555444 43333
Q ss_pred CcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCC
Q 004022 204 PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPG 283 (779)
Q Consensus 204 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~ 283 (779)
. .+...++|+.|++++|...... .+.++++|++|++++|.+.. ++. ++.+++|++|++++|++++++. ++++++
T Consensus 145 ~-~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~ 218 (227)
T d1h6ua2 145 S-PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP-LANTSN 218 (227)
T ss_dssp G-GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTT
T ss_pred h-hhccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCCcc-cccCCC
Confidence 2 3556788888988888754432 27788899999998886543 443 7888999999999999998875 888999
Q ss_pred CCEEeccC
Q 004022 284 LEVLFVED 291 (779)
Q Consensus 284 L~~L~L~~ 291 (779)
|+.|++++
T Consensus 219 L~~L~lsn 226 (227)
T d1h6ua2 219 LFIVTLTN 226 (227)
T ss_dssp CCEEEEEE
T ss_pred CCEEEeeC
Confidence 99998864
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=3.4e-15 Score=147.58 Aligned_cols=181 Identities=20% Similarity=0.258 Sum_probs=109.7
Q ss_pred EEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCC
Q 004022 192 RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPI 271 (779)
Q Consensus 192 ~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i 271 (779)
.|++.++.|+.++ .+.++++|++|++++|.+.+..| +..+++|+++++++|.... + ..+..+++|+.++++++..
T Consensus 45 ~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~ 119 (227)
T d1h6ua2 45 TLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQI 119 (227)
T ss_dssp EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCC
T ss_pred EEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccccccccc
Confidence 3333333345553 46777777777777776554332 6667777777777765432 2 2356667777777776666
Q ss_pred CcCCccCCCCCCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhcc
Q 004022 272 TELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLL 351 (779)
Q Consensus 272 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 351 (779)
..++. +...+.++.+.++.+..... ..+...++|+.|++++|.+....+ +.
T Consensus 120 ~~~~~-~~~~~~~~~l~~~~~~~~~~-------------------------~~~~~~~~L~~L~l~~n~~~~~~~---l~ 170 (227)
T d1h6ua2 120 TDVTP-LAGLSNLQVLYLDLNQITNI-------------------------SPLAGLTNLQYLSIGNAQVSDLTP---LA 170 (227)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCCC-------------------------GGGGGCTTCCEEECCSSCCCCCGG---GT
T ss_pred cccch-hccccchhhhhchhhhhchh-------------------------hhhccccccccccccccccccchh---hc
Confidence 55433 45566666666665543221 113445667777777766554332 45
Q ss_pred CCCCCcEEEecCCCCccCCcccCCCCCccEEEEecCCCccCChhccCCCCCCEEEcC
Q 004022 352 GLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLE 408 (779)
Q Consensus 352 ~l~~L~~L~Ls~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls 408 (779)
++++|+.|++++|.+++++. +..+++|++|+|++|+++.++. ++++++|+.|+++
T Consensus 171 ~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls 225 (227)
T d1h6ua2 171 NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225 (227)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred ccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence 66777777777777666543 5666777777777777776663 6677777776654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.61 E-value=4.2e-15 Score=144.86 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=131.0
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.+|++|++++|.++.++..-.+++|++|+|++|+|+.+ + .++.+++|++|++++|+ ++.+|.+.++++|+
T Consensus 46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l--------~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~ 115 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--------K-PLANLKNLGWLFLDENK-VKDLSSLKDLKKLK 115 (210)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--------G-GGTTCTTCCEEECCSSC-CCCGGGGTTCTTCC
T ss_pred cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc--------c-ccccCcccccccccccc-cccccccccccccc
Confidence 58999999999999987644899999999999999873 3 36789999999999997 55677788888999
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|++++|.. ..+ ..+..+++|+.+++++|.+.. .+ .+..+++|+++++++|.+.+
T Consensus 116 ~L~l~~~~~---------------------~~~-~~l~~l~~l~~l~~~~n~l~~-~~-~~~~l~~L~~l~l~~n~l~~- 170 (210)
T d1h6ta2 116 SLSLEHNGI---------------------SDI-NGLVHLPQLESLYLGNNKITD-IT-VLSRLTKLDTLSLEDNQISD- 170 (210)
T ss_dssp EEECTTSCC---------------------CCC-GGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCC-
T ss_pred ccccccccc---------------------ccc-ccccccccccccccccccccc-cc-cccccccccccccccccccc-
Confidence 999888864 223 246677888888888887543 22 36678889999998887654
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEeccC
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVED 291 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~ 291 (779)
++ .+.++++|++|++++|.++.+| .+..+++|+.|+|++
T Consensus 171 i~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 171 IV-PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CG-GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred cc-cccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence 33 3788899999999999998886 488899999999864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=9.7e-15 Score=140.97 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=118.6
Q ss_pred CCceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCc
Q 004022 91 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 170 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~ 170 (779)
.++++|+++++.+++++..-.+++|++|++++|+++.+ ++ ++++++|++|++++|. ...++.+.++++|+
T Consensus 40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--------~~-l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~ 109 (199)
T d2omxa2 40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--------TP-LKNLTKLVDILMNNNQ-IADITPLANLTNLT 109 (199)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--------GG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCS
T ss_pred cCCCEEECCCCCCCCccccccCCCcCcCccccccccCc--------cc-ccCCcccccccccccc-cccccccccccccc
Confidence 48999999999999887544889999999999999873 32 7789999999999987 45666777888888
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
.|++++|... .+ ..+..+++|+.|++++|++. .++ .+..+++|+.|++.+|.+.+
T Consensus 110 ~L~l~~~~~~---------------------~~-~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~- 164 (199)
T d2omxa2 110 GLTLFNNQIT---------------------DI-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD- 164 (199)
T ss_dssp EEECCSSCCC---------------------CC-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-
T ss_pred cccccccccc---------------------cc-cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-
Confidence 8888887653 22 23566777777877777643 333 36677777778777776544
Q ss_pred cchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEE
Q 004022 251 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVL 287 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 287 (779)
++ .++++++|++|++++|++++++ .++.+++|+.|
T Consensus 165 l~-~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 165 LK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp CG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred Cc-cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence 22 3677788888888888877765 36677777765
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=8e-15 Score=146.40 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=73.4
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC--CCCCCCCc
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS--NLHFVCPV 170 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~--~~~l~~L~ 170 (779)
.++++.++..++++|..+. .++++|+|++|+|+.+ -+.+|.++++|++|++++|.+...++. +.++++++
T Consensus 10 ~~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~l-------~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~ 81 (242)
T d1xwdc1 10 NRVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVI-------QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 81 (242)
T ss_dssp SSEEEEESCSCSSCCSCSC-SCCSEEEEESCCCCEE-------CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCC
T ss_pred CCEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCCcc-------ChhHhhccchhhhhhhccccccceeeccccccccccc
Confidence 4678888888888887653 5788999999988874 233577889999999998887665544 45677777
Q ss_pred EEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCC
Q 004022 171 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRL 224 (779)
Q Consensus 171 ~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 224 (779)
++.+..+.... ...+..+.++++|++|++++|.+.
T Consensus 82 ~l~~~~~n~l~-------------------~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 82 EIRIEKANNLL-------------------YINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp EEEEECCTTCC-------------------EECTTSEECCTTCCEEEEESCCCC
T ss_pred ccccccccccc-------------------ccccccccccccccccccchhhhc
Confidence 77776554331 222345566777777777776643
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=8e-15 Score=142.85 Aligned_cols=166 Identities=18% Similarity=0.180 Sum_probs=116.1
Q ss_pred hcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCcEEECCCCC
Q 004022 45 TNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSK 124 (779)
Q Consensus 45 ~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~ 124 (779)
..+.+|+.|++++|.++ .++ ++..+ ++|++|++++|.++.++....+++|++|++++|+
T Consensus 43 ~~L~~L~~L~l~~~~i~-------------------~l~-~l~~l-~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~ 101 (210)
T d1h6ta2 43 NELNSIDQIIANNSDIK-------------------SVQ-GIQYL-PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK 101 (210)
T ss_dssp HHHHTCCEEECTTSCCC-------------------CCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred HHhcCccEEECcCCCCC-------------------Cch-hHhhC-CCCCEEeCCCccccCccccccCcccccccccccc
Confidence 35778999999999884 233 46667 5999999999999999876689999999999999
Q ss_pred CCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccC
Q 004022 125 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP 204 (779)
Q Consensus 125 i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp 204 (779)
|+. +| .+..+++|+.|++++|.. ..++.+.++++|+.+++++|.... .
T Consensus 102 i~~--------l~-~l~~l~~L~~L~l~~~~~-~~~~~l~~l~~l~~l~~~~n~l~~---------------------~- 149 (210)
T d1h6ta2 102 VKD--------LS-SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITD---------------------I- 149 (210)
T ss_dssp CCC--------GG-GGTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCC---------------------C-
T ss_pred ccc--------cc-cccccccccccccccccc-cccccccccccccccccccccccc---------------------c-
Confidence 987 34 577999999999999984 567778888999999999886532 1
Q ss_pred cccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecC
Q 004022 205 SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSD 267 (779)
Q Consensus 205 ~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 267 (779)
..+..+++|+++++++|++.+ ++. +.++++|++|++++|.+. .++ .+..+++|++|+++
T Consensus 150 ~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 150 TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred ccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence 123344555555555554432 222 445555555555555432 233 35555555555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.8e-14 Score=141.36 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=73.3
Q ss_pred cEEEecCCcCccccCCcC-CCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCccccc-ccCCCCCCcEEecccc-
Q 004022 170 VTINFSYCVNLIEFPQIS-GKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRIST-SFCKLRSLVTLILLGC- 245 (779)
Q Consensus 170 ~~L~L~~~~~l~~~~~~~-~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~- 245 (779)
+.++.++.. ++.+|..+ .++++|++++|.|..+|. .|.++++|++|++++|.....++. .|.+++.++++.+..+
T Consensus 11 ~~i~c~~~~-l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 11 RVFLCQESK-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp SEEEEESCS-CSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred CEEEEeCCC-CCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 455555543 45666554 478888888888888876 467788888888888877665543 4677888888877654
Q ss_pred cCCcccchhhhcCccCcEeecCCcCCCcCCc
Q 004022 246 LNLEHFPEILEKMEHLKRIYSDRTPITELPS 276 (779)
Q Consensus 246 ~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~ 276 (779)
......+..+..+++|++++++++.++..+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~ 120 (242)
T d1xwdc1 90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD 120 (242)
T ss_dssp TCCEECTTSEECCTTCCEEEEESCCCCSCCC
T ss_pred cccccccccccccccccccccchhhhccccc
Confidence 3444455667777788888887777776544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.54 E-value=3.9e-14 Score=136.61 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=94.3
Q ss_pred CCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCccCCCCCCCCEEec
Q 004022 210 LTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFV 289 (779)
Q Consensus 210 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L 289 (779)
+.++++|++++|.+.. ++ .+..+++|++|++++|.+.+. +. ++++++|++|++++|.+..++. ++.+++|+.|++
T Consensus 39 l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l 113 (199)
T d2omxa2 39 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 113 (199)
T ss_dssp HTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred hcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccccccc-cccccccccccc
Confidence 3455555555554322 22 244455555555555544332 21 5555666666666666555543 556666666666
Q ss_pred cCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC
Q 004022 290 EDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI 369 (779)
Q Consensus 290 ~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~ 369 (779)
++|..... ..+..+++|+.|++++|.+... +. +..+++|+.|++.+|.++++
T Consensus 114 ~~~~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~-~~--l~~~~~L~~L~l~~n~l~~l 165 (199)
T d2omxa2 114 FNNQITDI-------------------------DPLKNLTNLNRLELSSNTISDI-SA--LSGLTSLQQLNFSSNQVTDL 165 (199)
T ss_dssp CSSCCCCC-------------------------GGGTTCTTCSEEECCSSCCCCC-GG--GTTCTTCSEEECCSSCCCCC
T ss_pred cccccccc-------------------------cccchhhhhHHhhhhhhhhccc-cc--ccccccccccccccccccCC
Confidence 65543221 1134456666666666665432 21 45677778888888777776
Q ss_pred CcccCCCCCccEEEEecCCCccCChhccCCCCCCEE
Q 004022 370 PQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFI 405 (779)
Q Consensus 370 p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 405 (779)
+ .++.+++|++|++++|+++.++ .++++++|++|
T Consensus 166 ~-~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 166 K-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp G-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred c-cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence 5 3677788888888888887775 46777777764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=7.2e-16 Score=169.12 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=69.4
Q ss_pred hhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCC-----CCCCC--CCCC
Q 004022 42 RAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRT-----LPSNF--KPKN 114 (779)
Q Consensus 42 ~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~-----lp~~~--~l~~ 114 (779)
+.+..+++||+|+|++|.+++ .....+...+... ++|++|++++|+++. +...+ ...+
T Consensus 21 ~l~~~l~~l~~L~L~~~~i~~--------------~~~~~l~~~L~~~-~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~ 85 (460)
T d1z7xw1 21 ELLPLLQQCQVVRLDDCGLTE--------------ARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCK 85 (460)
T ss_dssp HHHHHHTTCSEEEEESSCCCH--------------HHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred HHHHhCCCCCEEEeCCCCCCH--------------HHHHHHHHHHhcC-CCCCEEECcCCcCChHHHHHHHHHHhcCCCC
Confidence 467789999999999998852 1112344455566 489999999999853 33333 3457
Q ss_pred CcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCC
Q 004022 115 LVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQS 156 (779)
Q Consensus 115 L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~ 156 (779)
|++|+|++|+++...-.. ++..+..+++|++|+|++|.+
T Consensus 86 L~~L~L~~n~it~~~~~~---l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 86 IQKLSLQNCCLTGAGCGV---LSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp CCEEECTTSCCBGGGHHH---HHHHTTSCTTCCEEECCSSBC
T ss_pred CCEEECCCCCcccccccc---ccchhhccccccccccccccc
Confidence 999999999987531111 556677899999999999874
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.2e-14 Score=143.26 Aligned_cols=62 Identities=23% Similarity=0.357 Sum_probs=30.9
Q ss_pred cCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc--cchhhhcCccCcEeecCC
Q 004022 207 IECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH--FPEILEKMEHLKRIYSDR 268 (779)
Q Consensus 207 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~L~~ 268 (779)
+..+++|++|++++|......+..+..+++|++|++++|...+. +......+++|++|++++
T Consensus 67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~ 130 (284)
T d2astb2 67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130 (284)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccc
Confidence 44455555555555554444444455555555665555543321 222233445555555554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.39 E-value=1.3e-12 Score=124.94 Aligned_cols=170 Identities=16% Similarity=0.066 Sum_probs=114.9
Q ss_pred ceEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCC-CCCCCCCcE
Q 004022 93 LRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLHFVCPVT 171 (779)
Q Consensus 93 L~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~-~~~l~~L~~ 171 (779)
.++++.+++.++++|..+ +.++++|+|++|+|+..- .+..|.++++|+.|+|++|.+....+. +..+++|++
T Consensus 10 ~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~------~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~ 82 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRIS------SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBC------CSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccc------cccccCCCceEeeeeccccccccccccccccccccce
Confidence 457888999999999876 368999999999997520 345678899999999999886655544 445777777
Q ss_pred EEecCCcCccccCCcCCCccEEEecCcCCcccCc-ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcc
Q 004022 172 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 250 (779)
Q Consensus 172 L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 250 (779)
|++++|+. ..+|+ .|.++++|++|+|++|++....+..|..+++|++|+|++|.....
T Consensus 83 L~Ls~N~l---------------------~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~ 141 (192)
T d1w8aa_ 83 LQLGENKI---------------------KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EECCSCCC---------------------CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred eeeccccc---------------------cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence 77777654 45544 567788888888888887766677778888888888888766543
Q ss_pred cchhhhcCccCcEeecCCcCCC-cCCccCCCCCCCCEEeccCCCC
Q 004022 251 FPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~ 294 (779)
... ..-...++.+.+..+.++ ..|. .+.+++.++++.+.+
T Consensus 142 ~~~-~~~~~~l~~~~l~~~~~~c~~p~---~l~~~~l~~L~~n~l 182 (192)
T d1w8aa_ 142 CHL-AWFAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182 (192)
T ss_dssp GGG-HHHHHHHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTC
T ss_pred cch-HHHhhhhhhhcccCCCeEeCCCh---hhcCCEeeecCHhhC
Confidence 221 111223455556666555 3443 344455555655443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.36 E-value=6e-13 Score=127.33 Aligned_cols=91 Identities=18% Similarity=0.077 Sum_probs=60.4
Q ss_pred ccCCCCCccEEeeeCCCCCcccccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCcc-CCCCCCC
Q 004022 206 SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGL 284 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L 284 (779)
.++.+++|+.|++++|.+....+..+..+++|++|+|++|.+....+..|.++++|++|+|++|.|+.+|.. |..+++|
T Consensus 49 ~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L 128 (192)
T d1w8aa_ 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred ccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccc
Confidence 345566666666666666665566666666666666666666655566667777777777777777776554 6677777
Q ss_pred CEEeccCCCCCC
Q 004022 285 EVLFVEDCSKLD 296 (779)
Q Consensus 285 ~~L~L~~~~~~~ 296 (779)
++|+|++|++..
T Consensus 129 ~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 129 TSLNLASNPFNC 140 (192)
T ss_dssp CEEECTTCCBCC
T ss_pred cccccccccccc
Confidence 777777766543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=6.8e-15 Score=161.16 Aligned_cols=226 Identities=15% Similarity=0.202 Sum_probs=122.4
Q ss_pred cCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCC-----CCCCC-CCCCCcEEECC
Q 004022 48 SNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRT-----LPSNF-KPKNLVELNLR 121 (779)
Q Consensus 48 ~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~-----lp~~~-~l~~L~~L~L~ 121 (779)
.+|+.||+++|++++ ..+.+-+..+ +++|+|+|++|.++. ++..+ ..++|++|+|+
T Consensus 2 ~~l~~ld~~~~~i~~-----------------~~~~~l~~~l-~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs 63 (460)
T d1z7xw1 2 LDIQSLDIQCEELSD-----------------ARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63 (460)
T ss_dssp EEEEEEEEESCCCCH-----------------HHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT
T ss_pred CCCCEEEeeCCcCCh-----------------HHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECc
Confidence 368899999999852 1122222233 588999999998863 33333 77899999999
Q ss_pred CCCCCCccCCCCcccCcccc-CCCCCcEEeccCCCCCCC----CCC-CCCCCCCcEEEecCCcCccccC--------CcC
Q 004022 122 CSKVEQPWEGEKACVPSSIQ-NFKYLSALSFKGCQSLRS----FPS-NLHFVCPVTINFSYCVNLIEFP--------QIS 187 (779)
Q Consensus 122 ~n~i~~l~~g~~~~lp~~~~-~l~~L~~L~Ls~n~~l~~----~p~-~~~l~~L~~L~L~~~~~l~~~~--------~~~ 187 (779)
+|.|+.. |.. .+...+. ...+|++|+|++|++... ++. +..+++|++|++++|....... ...
T Consensus 64 ~N~i~~~--~~~-~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~ 140 (460)
T d1z7xw1 64 SNELGDV--GVH-CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 140 (460)
T ss_dssp TCCCHHH--HHH-HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred CCcCChH--HHH-HHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccc
Confidence 9988631 100 0222222 235799999999985432 222 4568899999999887543111 111
Q ss_pred CCccEEEecCcCCccc-----CcccCCCCCccEEeeeCCCCCcc----ccccc-CCCCCCcEEecccccCCcc----cch
Q 004022 188 GKVTRLYLGQSAIEEV-----PSSIECLTDLEVLDLRGCKRLKR----ISTSF-CKLRSLVTLILLGCLNLEH----FPE 253 (779)
Q Consensus 188 ~~L~~L~L~~n~i~~l-----p~~l~~l~~L~~L~L~~~~~~~~----lp~~l-~~l~~L~~L~L~~~~~~~~----~p~ 253 (779)
............+... ...+.....++.++++++..... ....+ ........+.+.++..... ...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (460)
T d1z7xw1 141 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 220 (460)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred cccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccc
Confidence 1223333333322111 11233345666777766543221 00011 1123445566655543321 223
Q ss_pred hhhcCccCcEeecCCcCCCc------CCccCCCCCCCCEEeccCCCC
Q 004022 254 ILEKMEHLKRIYSDRTPITE------LPSSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 254 ~l~~l~~L~~L~L~~n~i~~------lp~~l~~l~~L~~L~L~~~~~ 294 (779)
.+...+.++.+++.++.+.. ++........++.+++++|.+
T Consensus 221 ~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i 267 (460)
T d1z7xw1 221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 267 (460)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred cccccccccccchhhccccccccchhhcccccccccccccccccccc
Confidence 34455667777777666531 122244456677777766643
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=6.5e-14 Score=143.10 Aligned_cols=185 Identities=17% Similarity=0.140 Sum_probs=101.9
Q ss_pred ccCCCCCccEEeeeCCCCCcc-cccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc-CCCc--CCccCCCC
Q 004022 206 SIECLTDLEVLDLRGCKRLKR-ISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT-PITE--LPSSFENL 281 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n-~i~~--lp~~l~~l 281 (779)
......+|++|++++|.+... +...+..+++|++|++++|......+..++.+++|++|+++++ .++. +......+
T Consensus 41 ~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~ 120 (284)
T d2astb2 41 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120 (284)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence 334456788888888765543 3444667788888888888776666777777778888888773 4542 22223456
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCchhHHHHHhhcccCCcCCccccCccccCeeeccCCCC--CCccChhhccCCCCCcEE
Q 004022 282 PGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKG--LESFPRTFLLGLSAMGLL 359 (779)
Q Consensus 282 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~~~~~~~~~~~lp~~l~~l~~L~~L~l~~n~~--~~~~~~~~~~~l~~L~~L 359 (779)
++|++|++++|..... ..+.... ....++|+.|+++++.. ....-......+++|++|
T Consensus 121 ~~L~~L~ls~c~~~~~--------~~~~~~~------------~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L 180 (284)
T d2astb2 121 SRLDELNLSWCFDFTE--------KHVQVAV------------AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180 (284)
T ss_dssp TTCCEEECCCCTTCCH--------HHHHHHH------------HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred Hhcccccccccccccc--------ccchhhh------------cccccccchhhhccccccccccccccccccccccccc
Confidence 7777777777643211 0000000 01234566666666521 111111112345666666
Q ss_pred EecCCC-Ccc-CCcccCCCCCccEEEEecC-CCc-cCChhccCCCCCCEEEcCCC
Q 004022 360 HISDYA-VRE-IPQEIAYLSSLEILYLSGN-NFE-SLPAIIKQMSQLRFIHLEDF 410 (779)
Q Consensus 360 ~Ls~~~-l~~-~p~~l~~l~~L~~L~Ls~n-~l~-~lp~~l~~l~~L~~L~Ls~n 410 (779)
++++|. +++ ....+..+++|++|+|++| .++ .....++++++|+.|++++|
T Consensus 181 ~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 666653 333 3344555666666666664 343 22233555566666555554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=3.4e-12 Score=112.13 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=60.3
Q ss_pred eEEEccCCCCCCCCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEE
Q 004022 94 RYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTIN 173 (779)
Q Consensus 94 ~~L~l~~n~l~~lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~ 173 (779)
|+|++++|.++.++..-.+.+|++|++++|.|++ +|+.++.+++|++|++++|. ++.+|++..+++|++|+
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--------lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~ 71 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--------LPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELL 71 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--------CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEE
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--------chhhhhhhhccccccccccc-ccccCccccccccCeEE
Confidence 6789999999888764488889999999999887 67778888899999998887 44566666677777777
Q ss_pred ecCCcC
Q 004022 174 FSYCVN 179 (779)
Q Consensus 174 L~~~~~ 179 (779)
+++|..
T Consensus 72 l~~N~i 77 (124)
T d1dcea3 72 LCNNRL 77 (124)
T ss_dssp CCSSCC
T ss_pred CCCCcc
Confidence 666654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.9e-12 Score=119.75 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=29.3
Q ss_pred CceEEEccCCCCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCC
Q 004022 92 KLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 155 (779)
Q Consensus 92 ~L~~L~l~~n~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~ 155 (779)
+||+|+|++|.++.+|..+ .+.+|++|+|++|.|+.+ +.|..+++|++|++++|+
T Consensus 19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l---------~~~~~l~~L~~L~ls~N~ 74 (162)
T d1a9na_ 19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---------DGFPLLRRLKTLLVNNNR 74 (162)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---------CCCCCCSSCCEEECCSSC
T ss_pred cCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc---------CCcccCcchhhhhccccc
Confidence 5666666666666665443 455555555555555542 123345555555555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.3e-11 Score=113.87 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=58.6
Q ss_pred CCCCCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCCCCCCcEEEecCCcCccccCC
Q 004022 106 LPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQ 185 (779)
Q Consensus 106 lp~~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~l~~L~~L~L~~~~~l~~~~~ 185 (779)
.|...++.+|++|+|++|+|+. ++..+..+++|++|+|++|. +..++.+..+++|++|++++|..
T Consensus 11 ~~~~~n~~~lr~L~L~~n~I~~--------i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~i------ 75 (162)
T d1a9na_ 11 AAQYTNAVRDRELDLRGYKIPV--------IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRI------ 75 (162)
T ss_dssp SCEEECTTSCEEEECTTSCCCS--------CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCC------
T ss_pred hHhccCcCcCcEEECCCCCCCc--------cCccccccccCCEEECCCCC-CCccCCcccCcchhhhhcccccc------
Confidence 3333366677777777777776 34444566777777777776 33445455555555555555443
Q ss_pred cCCCccEEEecCcCCcccCcc-cCCCCCccEEeeeCCCCCcccc-cccCCCCCCcEEeccccc
Q 004022 186 ISGKVTRLYLGQSAIEEVPSS-IECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCL 246 (779)
Q Consensus 186 ~~~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~ 246 (779)
..++.. +..+++|+.|++++|++...-. ..+..+++|++|++++|.
T Consensus 76 ---------------~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~ 123 (162)
T d1a9na_ 76 ---------------CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123 (162)
T ss_dssp ---------------CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred ---------------cCCCccccccccccccceeccccccccccccccccccccchhhcCCCc
Confidence 344433 2345566666666655332110 123444444444444443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=4.2e-11 Score=104.95 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=46.7
Q ss_pred eecccccccccChhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCC
Q 004022 29 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS 108 (779)
Q Consensus 29 Ld~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~ 108 (779)
||++++....++ .++++++|++|++++|.++ .+|.++..+ ++|++|++++|.++.+|.
T Consensus 3 L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~-------------------~lp~~~~~l-~~L~~L~l~~N~i~~l~~ 60 (124)
T d1dcea3 3 LHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-------------------ALPPALAAL-RCLEVLQASDNALENVDG 60 (124)
T ss_dssp EECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-------------------CCCGGGGGC-TTCCEEECCSSCCCCCGG
T ss_pred EEcCCCCCCCCc--ccccCCCCCEEECCCCccC-------------------cchhhhhhh-hcccccccccccccccCc
Confidence 444444443333 2455555555555555542 344444444 255555555555555543
Q ss_pred CCCCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCC
Q 004022 109 NFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 155 (779)
Q Consensus 109 ~~~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~ 155 (779)
...+++|++|++++|+|+.+. ....++.+++|++|++++|.
T Consensus 61 ~~~l~~L~~L~l~~N~i~~~~------~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 61 VANLPRLQELLLCNNRLQQSA------AIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp GTTCSSCCEEECCSSCCCSSS------TTGGGGGCTTCCEEECTTSG
T ss_pred cccccccCeEECCCCccCCCC------CchhhcCCCCCCEEECCCCc
Confidence 335555555555555554420 01234445555555555554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.14 E-value=3.1e-12 Score=134.40 Aligned_cols=238 Identities=12% Similarity=0.045 Sum_probs=164.7
Q ss_pred hhhhhcccCCceEeeccCcccccccCCCCccccccccceeecCCCCCCCCCCceEEEccCCCCCCCCCC-----------
Q 004022 41 PRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN----------- 109 (779)
Q Consensus 41 ~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~n~l~~lp~~----------- 109 (779)
..++..+..|+.|+|++|.+.+ .....+...+... ++|+.|+++++........
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~--------------~~~~~l~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~ 88 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGT--------------EAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQA 88 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECH--------------HHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred HHHHhhCCCCCEEECcCCcCCH--------------HHHHHHHHHHHhC-CCCCEEECCCCcccccccccchHHHHHHHH
Confidence 3567889999999999998741 1112344455556 5899999998876543221
Q ss_pred C-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCC--------CCC------CCCCCCCcEEEe
Q 004022 110 F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS--------FPS------NLHFVCPVTINF 174 (779)
Q Consensus 110 ~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~--------~p~------~~~l~~L~~L~L 174 (779)
+ ..++|++|+|++|.++.. +. ..+...+...++|++|++++|.+... +.. ....+.|+.+.+
T Consensus 89 l~~~~~L~~L~L~~n~i~~~--~~-~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l 165 (344)
T d2ca6a1 89 LLKCPKLHTVRLSDNAFGPT--AQ-EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 165 (344)
T ss_dssp HTTCTTCCEEECCSCCCCTT--TH-HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HhhCCCcccccccccccccc--cc-cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeec
Confidence 1 568899999999988752 11 01444556788999999998874221 000 124678899999
Q ss_pred cCCcCcccc-------CCcCCCccEEEecCcCCcc------cCcccCCCCCccEEeeeCCCCCc----ccccccCCCCCC
Q 004022 175 SYCVNLIEF-------PQISGKVTRLYLGQSAIEE------VPSSIECLTDLEVLDLRGCKRLK----RISTSFCKLRSL 237 (779)
Q Consensus 175 ~~~~~l~~~-------~~~~~~L~~L~L~~n~i~~------lp~~l~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L 237 (779)
++|...... ......|+.|++++|.+.. +...+...++|+.|++++|.+.. .+...+..+++|
T Consensus 166 ~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L 245 (344)
T d2ca6a1 166 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245 (344)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred ccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccc
Confidence 888654321 1234679999999998853 34467788999999999998643 244557788999
Q ss_pred cEEecccccCCcc----cchhhhc--CccCcEeecCCcCCCc-----CCccCC-CCCCCCEEeccCCCCCC
Q 004022 238 VTLILLGCLNLEH----FPEILEK--MEHLKRIYSDRTPITE-----LPSSFE-NLPGLEVLFVEDCSKLD 296 (779)
Q Consensus 238 ~~L~L~~~~~~~~----~p~~l~~--l~~L~~L~L~~n~i~~-----lp~~l~-~l~~L~~L~L~~~~~~~ 296 (779)
++|+|++|.+... +.+.+.. ...|++|++++|.|+. +...+. +.++|+.|++++|.+..
T Consensus 246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 9999999987654 3333433 4679999999999873 444443 57899999999987643
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.07 E-value=9.7e-12 Score=130.56 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=30.0
Q ss_pred CCCCCcEEEecCCCCcc-----CCcccC--CCCCccEEEEecCCCcc-----CChhcc-CCCCCCEEEcCCCCCC
Q 004022 352 GLSAMGLLHISDYAVRE-----IPQEIA--YLSSLEILYLSGNNFES-----LPAIIK-QMSQLRFIHLEDFNML 413 (779)
Q Consensus 352 ~l~~L~~L~Ls~~~l~~-----~p~~l~--~l~~L~~L~Ls~n~l~~-----lp~~l~-~l~~L~~L~Ls~n~~~ 413 (779)
..++|++|++++|.+++ +-..+. ..+.|++|++++|+++. +...+. ++++|+.|++++|.+.
T Consensus 241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 44455555555555443 111121 22456666666665541 233332 4556666666666553
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.94 E-value=6.7e-12 Score=120.16 Aligned_cols=125 Identities=19% Similarity=0.219 Sum_probs=61.2
Q ss_pred CceEEEccCC--CCCCCCCCC-CCCCCcEEECCCCCCCCccCCCCcccCccccCCCCCcEEeccCCCCCCCCCCCCC-CC
Q 004022 92 KLRYLHWDTY--PLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLH-FV 167 (779)
Q Consensus 92 ~L~~L~l~~n--~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~~~~~l~~L~~L~Ls~n~~l~~~p~~~~-l~ 167 (779)
.++.+++.+. +++.+|..+ .+++|++|+|++|+|+. ++ .+..+++|++|+|++|.+ +.+|.+.. ++
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~--------i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~ 93 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--------IS-SLSGMENLRILSLGRNLI-KKIENLDAVAD 93 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC--------CC-CHHHHTTCCEEECCEEEE-CSCSSHHHHHH
T ss_pred ccceeeeecccCchhhhhhHHhcccccceeECcccCCCC--------cc-cccCCccccChhhccccc-ccccccccccc
Confidence 3444555443 244444444 55666666666666654 22 244556666666665542 33333221 22
Q ss_pred CCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc-cccCCCCCCcEEeccccc
Q 004022 168 CPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCL 246 (779)
Q Consensus 168 ~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~ 246 (779)
+|+.|++++ |.+..++ .+..+++|+.|++++|++...-. ..+..+++|+.|++++|.
T Consensus 94 ~L~~L~l~~---------------------N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 94 TLEELWISY---------------------NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HCCEEECSE---------------------EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred ccccccccc---------------------ccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence 333333333 3334443 34455666666666665433211 235556666666666655
Q ss_pred CC
Q 004022 247 NL 248 (779)
Q Consensus 247 ~~ 248 (779)
+.
T Consensus 152 l~ 153 (198)
T d1m9la_ 152 LY 153 (198)
T ss_dssp HH
T ss_pred cc
Confidence 43
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.93 E-value=2.3e-12 Score=123.52 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=11.2
Q ss_pred ccCCCCCccEEeeeCCCCC
Q 004022 206 SIECLTDLEVLDLRGCKRL 224 (779)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~~ 224 (779)
.+..+++|+.|++++|++.
T Consensus 135 ~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 135 KLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHTTTTTCSEEEECSSHHH
T ss_pred cccCCCccceeecCCCccc
Confidence 3455666666666666543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=5.6e-09 Score=95.13 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=89.0
Q ss_pred cEEEecCcCCcccCcccCCCCCccEEeeeCCCCCcccc-cccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCc
Q 004022 191 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRIS-TSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 269 (779)
Q Consensus 191 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 269 (779)
+.++..++.+.++|..+..+++|++|++++++.++.++ ..|.++++|+.|++++|.+....+..|..+++|++|+|++|
T Consensus 11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 34666666678888889899999999998876555554 56899999999999999988877889999999999999999
Q ss_pred CCCcCCccCCCCCCCCEEeccCCCC
Q 004022 270 PITELPSSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 270 ~i~~lp~~l~~l~~L~~L~L~~~~~ 294 (779)
+++.+|.......+|+.|+|++|++
T Consensus 91 ~l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCcccChhhhccccccccccCCCcc
Confidence 9999998866666899999999876
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2.3e-08 Score=90.90 Aligned_cols=93 Identities=23% Similarity=0.174 Sum_probs=68.3
Q ss_pred cCCccccCccccCeeeccCCCCCCccChhhccCCCCCcEEEecCCCCccC-CcccCCCCCccEEEEecCCCccCChhccC
Q 004022 320 QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEILYLSGNNFESLPAIIKQ 398 (779)
Q Consensus 320 ~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 398 (779)
..|..+..+++|++|+++++.....++...+.++++|+.|++++|+++.+ +..|..+++|++|+|++|+++.+|.....
T Consensus 22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 101 (156)
T d2ifga3 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (156)
T ss_dssp TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc
Confidence 34455566778888888777655555555577888888888888888886 45577888888888888888888865555
Q ss_pred CCCCCEEEcCCCCC
Q 004022 399 MSQLRFIHLEDFNM 412 (779)
Q Consensus 399 l~~L~~L~Ls~n~~ 412 (779)
..+|+.|+|++|++
T Consensus 102 ~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 102 GLSLQELVLSGNPL 115 (156)
T ss_dssp SCCCCEEECCSSCC
T ss_pred cccccccccCCCcc
Confidence 55788888877765
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=1.2e-06 Score=79.79 Aligned_cols=75 Identities=20% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCceEEEccCCCCCCCCCC---C-CCCCCcEEECCCCCCCCccCCCCcccCc-cccCCCCCcEEeccCCCCCCCCCC---
Q 004022 91 KKLRYLHWDTYPLRTLPSN---F-KPKNLVELNLRCSKVEQPWEGEKACVPS-SIQNFKYLSALSFKGCQSLRSFPS--- 162 (779)
Q Consensus 91 ~~L~~L~l~~n~l~~lp~~---~-~l~~L~~L~L~~n~i~~l~~g~~~~lp~-~~~~l~~L~~L~Ls~n~~l~~~p~--- 162 (779)
++|++|++++|.++.++.. + .+++|+.|+|++|.|+.+ ++ .+....+|+.|++++|.+......
T Consensus 65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l--------~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~ 136 (162)
T d1koha1 65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--------RELDKIKGLKLEELWLDGNSLSDTFRDQST 136 (162)
T ss_dssp TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCG--------GGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccc--------hhhhhhhccccceeecCCCCcCcCcccchh
Confidence 3777788888877776532 2 577788888888887763 21 222445677788888776544332
Q ss_pred -----CCCCCCCcEEE
Q 004022 163 -----NLHFVCPVTIN 173 (779)
Q Consensus 163 -----~~~l~~L~~L~ 173 (779)
+..+|+|+.||
T Consensus 137 y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 137 YISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHTTSTTCCEET
T ss_pred HHHHHHHHCCCCCEEC
Confidence 23477777775
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=3.8e-06 Score=76.34 Aligned_cols=81 Identities=21% Similarity=0.121 Sum_probs=46.9
Q ss_pred CCCCCccEEeeeCCCCCcc--cccccCCCCCCcEEecccccCCcccchhhhcCccCcEeecCCcCCCcCCc--------c
Q 004022 208 ECLTDLEVLDLRGCKRLKR--ISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS--------S 277 (779)
Q Consensus 208 ~~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~--------~ 277 (779)
..+++|++|++++|++... ++..+..+++|+.|++++|.+...-+-......+|+.|++++|++..... .
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 4466677777777665432 23334556777777777766554332223334467777777777764321 1
Q ss_pred CCCCCCCCEEe
Q 004022 278 FENLPGLEVLF 288 (779)
Q Consensus 278 l~~l~~L~~L~ 288 (779)
+..+|+|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 45577777765
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.37 E-value=0.00074 Score=60.91 Aligned_cols=90 Identities=10% Similarity=-0.037 Sum_probs=55.3
Q ss_pred cCcccCCCCCccEEeeeCCCCCcc----cccccCCCCCCcEEecccccCCcc----cchhhhcCccCcEeecCCcCCCcC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLEH----FPEILEKMEHLKRIYSDRTPITEL 274 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n~i~~l 274 (779)
+-..+...++|++|++++|.+... +...+...+.|++|+|++|.+... +.+.+...+.|++|++++|.+..+
T Consensus 36 l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~ 115 (167)
T d1pgva_ 36 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 115 (167)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCc
Confidence 334556667788888887765432 223344567788888888766542 334455667788888877765533
Q ss_pred --------CccCCCCCCCCEEeccCC
Q 004022 275 --------PSSFENLPGLEVLFVEDC 292 (779)
Q Consensus 275 --------p~~l~~l~~L~~L~L~~~ 292 (779)
...+..-++|+.|+++.+
T Consensus 116 g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 116 GNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 233444677788877653
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.92 E-value=0.0037 Score=56.10 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCCCCccEEeeeCCCCCc-----ccccccCCCCCCcEEecccccCCc----ccchhhhcCccCcEeecCCcCCCc-----
Q 004022 208 ECLTDLEVLDLRGCKRLK-----RISTSFCKLRSLVTLILLGCLNLE----HFPEILEKMEHLKRIYSDRTPITE----- 273 (779)
Q Consensus 208 ~~l~~L~~L~L~~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~~----- 273 (779)
.+.++|++|+|++++..+ .+-..+...++|++|+|++|.+.. .+.+.+...+.|++|++++|.++.
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 446889999999764332 133456778899999999998763 344566778899999999999983
Q ss_pred CCccCCCCCCCCEEeccCCCC
Q 004022 274 LPSSFENLPGLEVLFVEDCSK 294 (779)
Q Consensus 274 lp~~l~~l~~L~~L~L~~~~~ 294 (779)
+-..+...++|++|++++|..
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSS
T ss_pred HHHHHHhCCcCCEEECCCCcC
Confidence 445577889999999998753
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.17 E-value=0.0033 Score=56.29 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=57.4
Q ss_pred cCcccCCCCCccEEeeeCCCCCcc----cccccCCCCCCcEEecccccCCcc----cchhhhcCccCcEeec--CCcCCC
Q 004022 203 VPSSIECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLEH----FPEILEKMEHLKRIYS--DRTPIT 272 (779)
Q Consensus 203 lp~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L--~~n~i~ 272 (779)
+-..+...++|++|++++|.+... +...+...++++.+++++|..... +.+.+...++|+.++| ++|.+.
T Consensus 38 l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~ 117 (166)
T d1io0a_ 38 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 117 (166)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence 344556677888888888765432 223345567888888887766533 3455666777876555 455664
Q ss_pred -----cCCccCCCCCCCCEEeccCC
Q 004022 273 -----ELPSSFENLPGLEVLFVEDC 292 (779)
Q Consensus 273 -----~lp~~l~~l~~L~~L~L~~~ 292 (779)
.+...+...++|+.|+++.+
T Consensus 118 ~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 118 NNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 24445566788888888664
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=94.28 E-value=0.019 Score=51.09 Aligned_cols=115 Identities=10% Similarity=-0.011 Sum_probs=69.1
Q ss_pred ccCCCCCcEEeccCCCCCCC--C----CCCCCCCCCcEEEecCCcCccccCCcCCCccEEEecCcCCcccCcccCCCCCc
Q 004022 140 IQNFKYLSALSFKGCQSLRS--F----PSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDL 213 (779)
Q Consensus 140 ~~~l~~L~~L~Ls~n~~l~~--~----p~~~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~n~i~~lp~~l~~l~~L 213 (779)
..+.++|+.|+|+++...+. + ..+...++|++|++++|....... ..+...+...+.+
T Consensus 13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~----------------~~L~~~l~~~~~l 76 (166)
T d1io0a_ 13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA----------------FALAEMLKVNNTL 76 (166)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH----------------HHHHHHHHHCSSC
T ss_pred HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHH----------------HHHHHHHhhcccc
Confidence 34668888888887442221 1 112346677777777775432110 2333445556788
Q ss_pred cEEeeeCCCCCcc----cccccCCCCCCcEEeccc--ccCCc----ccchhhhcCccCcEeecCCcC
Q 004022 214 EVLDLRGCKRLKR----ISTSFCKLRSLVTLILLG--CLNLE----HFPEILEKMEHLKRIYSDRTP 270 (779)
Q Consensus 214 ~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~--~~~~~----~~p~~l~~l~~L~~L~L~~n~ 270 (779)
+.+++++|..... +...+...++|+.++|.. |.+.. .+.+.+...++|++|+++.+.
T Consensus 77 ~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 77 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 8888888775432 334566678888766653 33322 345566778889999887654
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