Citrus Sinensis ID: 004047
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 777 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.940 | 0.965 | 0.457 | 0.0 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.960 | 0.962 | 0.409 | 1e-151 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.888 | 0.943 | 0.370 | 1e-128 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.894 | 0.927 | 0.386 | 1e-128 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.656 | 0.632 | 0.252 | 4e-26 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.580 | 0.237 | 0.231 | 1e-10 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.576 | 0.235 | 0.232 | 2e-10 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.580 | 0.229 | 0.230 | 4e-10 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.576 | 0.235 | 0.227 | 1e-09 | |
| O31788 | 442 | Serine protease AprX OS=B | no | no | 0.114 | 0.201 | 0.382 | 4e-06 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/787 (45%), Positives = 481/787 (61%), Gaps = 56/787 (7%)
Query: 5 FIFFLFLLTLLASSAQKQKQVYIVHFGGSDNGEK-ALHEIQETHHSYLLSVKDNEEEARA 63
F L L SS+ + YIVH S LH + S L S+ D+ E
Sbjct: 11 FFLLLCLGFCHVSSSSSDQGTYIVHMAKSQMPSSFDLH--SNWYDSSLRSISDSAE---- 64
Query: 64 SHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAK 123
LY+Y+++I+GFS LT +EA L V+SV P H +Y L TTR+ F+GLDE
Sbjct: 65 -LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEH--RYELHTTRTPLFLGLDE--- 118
Query: 124 QNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAF 183
DL +A DV+VG++D GVWPESKS+SDEG GP+P SWKG C+ G F
Sbjct: 119 -------HTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNF 171
Query: 184 NSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAF 243
+SLCN+K+IGAR++ +G+E GP++ +++ RSPRD DGHGTHT+ST AG V AS
Sbjct: 172 TASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLL 231
Query: 244 GGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303
G +A GTA G AP AR+A+YK CW CF +D+LAAID AI D V+VLS+S
Sbjct: 232 G-YASGTARGMAPRARVAVYKVCWL---------GGCFSSDILAAIDKAIADNVNVLSMS 281
Query: 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRD 363
+G + RDG+AIGA A++ ILV+CSAGN+GP+ SSLSN+APW+ TVGAG+LDRD
Sbjct: 282 LGGGMS-DYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRD 340
Query: 364 FVGPVVLGTGMEIIGKTVTPYNL--KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKV 421
F +LG G G ++ K+ P +YA + + N C+ G+L PEKV
Sbjct: 341 FPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNAS----NATNGNLCMTGTLIPEKV 396
Query: 422 KGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIK 481
KGKIV+C RG ++ KG VK AGGVG+IL N+ ANG E DAH LPAT V
Sbjct: 397 KGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDI 456
Query: 482 IHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 541
I Y+ + NPTA I TV+ +P+P +A F+SRGPN++ P ILKPD+ APG+NILAA
Sbjct: 457 IRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAA 516
Query: 542 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601
W+ A+ P+ LA D R V++ I SGTSMSCPHV+ AALLK++HP+WS AAIRSALMTTA+
Sbjct: 517 WTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAY 576
Query: 602 MKNNKALPITN-ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTN 660
P+ + A G +TPF G+GH PT A +PGL+YD + EDYL +LC+ ++T+
Sbjct: 577 KTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCA--LNYTS 634
Query: 661 PVFRC---------PNKPPSALNLNYPSIAIPNLNGTVIVK--RTVTNVGGSKSVYFFSA 709
P R P+K S +LNYPS A+ N++G K RTVT+VGG+ +
Sbjct: 635 PQIRSVSRRNYTCDPSKSYSVADLNYPSFAV-NVDGVGAYKYTRTVTSVGGAGTYSVKVT 693
Query: 710 KPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVR 769
GV + P++L F +KKS+T+T + S + FG W+DG H+V
Sbjct: 694 SETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKP----SGSNSFGSIEWSDGKHVVG 749
Query: 770 SPMAVSF 776
SP+A+S+
Sbjct: 750 SPVAISW 756
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 537 bits (1383), Expect = e-151, Method: Compositional matrix adjust.
Identities = 324/792 (40%), Positives = 450/792 (56%), Gaps = 46/792 (5%)
Query: 5 FIFFLFLLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYL----LSVKDNEEE 60
F+ +FLL +SS QKQ YIV + K + H S+L L V++ EEE
Sbjct: 7 FLCIIFLLFCSSSSEILQKQTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVEEEEEE 66
Query: 61 ARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDE 120
+ LYSY +I GF+A LT EA L EVV+V P H +QTT S++F+GLD
Sbjct: 67 PSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDH--VLQVQTTYSYKFLGLDG 124
Query: 121 VAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTG 180
+ SK+R+GQ I+G++D GVWPES SF D GM +P+ WKGICQ G
Sbjct: 125 FGNSG---------VWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEG 175
Query: 181 VAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDR---SPRDMDGHGTHTASTVAGRRV 237
+F+SS CN+K+IGAR++++G P + R S RD GHGTHTASTV G V
Sbjct: 176 ESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSV 235
Query: 238 PNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 297
A+ G A G A G AP A +A+YK CW N C+ +D+LAAID AI+D V
Sbjct: 236 SMANVLGNGA-GVARGMAPGAHIAVYKVCWF---------NGCYSSDILAAIDVAIQDKV 285
Query: 298 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
VLS+S+G P D IAIG A++ I V C+AGN+GP SS++N APW+ T+GA
Sbjct: 286 DVLSLSLG-GFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGA 344
Query: 358 GSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLT 417
G+LDR F V L G + G+++ P K + +V+ + CL GSL
Sbjct: 345 GTLDRRFPAVVRLANGKLLYGESLYPG--KGIKNAGREVEVIYVTGGDKGSEFCLRGSLP 402
Query: 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYD 477
E+++GK+V+C RG + KG VK AGGV +IL N+ N E S D H LPAT + Y
Sbjct: 403 REEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYT 462
Query: 478 DAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN 537
+++ + Y+ +T P A I TV+ AP +A F++RGP+ +P ILKPD+ APG+N
Sbjct: 463 ESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVN 522
Query: 538 ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALM 597
I+AAW + P+ L +D R V +T+ SGTSMSCPHV+ AL+++ +P+WS AAI+SALM
Sbjct: 523 IIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALM 582
Query: 598 TTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFS 657
TTA + + + I + + A F+ G+GH P KA +PGLVY+ DY+ YLC+ GF+
Sbjct: 583 TTADLYDRQGKAIKDGNKP-AGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFT 641
Query: 658 ------FTNPVFRCPN--KPPSALNLNYPSIAIPNLNG--TVIVKRTVTNVGGSKSVYFF 707
T+ C + +LNYPSIA+ G T ++ R VTNVG S+Y
Sbjct: 642 RSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSV 701
Query: 708 SAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHL 767
+ K P G+ V NP L F H+ Q S+ + L + R G + G W + +L
Sbjct: 702 NVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVL-KKKNRGGKVASFAQGQLTWVNSHNL 760
Query: 768 ---VRSPMAVSF 776
VRSP++V+
Sbjct: 761 MQRVRSPISVTL 772
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 286/771 (37%), Positives = 419/771 (54%), Gaps = 81/771 (10%)
Query: 18 SAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFS 77
S K +YIV+ G + H HH +L A S L++YK S NGF+
Sbjct: 26 SDDDGKNIYIVYMGRKLEDPDSAH----LHHRAMLEQVVGSTFAPESVLHTYKRSFNGFA 81
Query: 78 AVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLS 137
LT +EA +++ +E VVSV+ + E L TTRSW+F+G +
Sbjct: 82 VKLTEEEAEKIASMEGVVSVFLN--EMNELHTTRSWDFLGFPLTVPR------------- 126
Query: 138 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARY 197
+++ +++VG++D G+WPES SF DEG P P WKG C+T F CN+KIIGAR
Sbjct: 127 RSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARS 183
Query: 198 YLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPL 257
Y G G +N PRD +GHGTHTAST AG V A+ +G GTA GG PL
Sbjct: 184 YHIGRPISPGDVNG------PRDTNGHGTHTASTAAGGLVSQANLYG-LGLGTARGGVPL 236
Query: 258 ARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGI 317
AR+A YK CW + C + D+LAA DDAI DGV ++S+S+G P + D I
Sbjct: 237 ARIAAYKVCW---------NDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAI 287
Query: 318 AIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377
AIG+ +AV+ IL + SAGN GP + ++L+PWL++V A ++DR FV V +G G
Sbjct: 288 AIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 347
Query: 378 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKL 436
G ++ ++ + +PLV D+ G ++ + C S+ P +KGKIV+C G +
Sbjct: 348 GVSINTFD-NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF 406
Query: 437 SKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAII 496
K ++ G G+++ +N +Y+ D++ LP++ + +D + YI S +P A I
Sbjct: 407 FKSLD----GAAGVLM---TSNTRDYA-DSYPLPSSVLDPNDLLATLRYIYSIRSPGATI 458
Query: 497 KQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKR 556
++ T+L+ AP + +F+SRGPN ++KPDI+ PG+ ILAAW + + +R
Sbjct: 459 FKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGI---RR 514
Query: 557 IVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGS 616
+ I SGTSMSCPH+ A +K +P WS AAI+SALMTTA N + P
Sbjct: 515 NTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNP------- 567
Query: 617 IATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFR-------CPNKP 669
F++GSGH P KA PGLVYDA+ DY+ +LC G++ T V R C +
Sbjct: 568 -QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYN-TQAVRRITGDYSACTSGN 625
Query: 670 PSAL-NLNYPSIAI---PNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILF 725
+ +LNYPS + P+ RT+T+V S Y P G+++ NP++L
Sbjct: 626 TGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLS 685
Query: 726 FDHIGQKKSFTITVRLGSETTRQGLTKQYVF-GWYRWTDGLHLVRSPMAVS 775
F+ +G +KSFT+TVR G K +V W+DG+H VRSP+ ++
Sbjct: 686 FNGLGDRKSFTLTVR--------GSIKGFVVSASLVWSDGVHYVRSPITIT 728
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 298/772 (38%), Positives = 431/772 (55%), Gaps = 77/772 (9%)
Query: 20 QKQKQVYIVHFGGS-DNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSA 78
+ K YI++ G DN E+ + +TH + L S+ ++EEA+ +YSY + N F+A
Sbjct: 32 EHAKDFYIIYLGDRPDNTEETI----KTHINLLSSLNISQEEAKERKVYSYTKAFNAFAA 87
Query: 79 VLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSK 138
L+P EA ++ E+EEVVSV S + L TT+SW+FVGL AK++
Sbjct: 88 KLSPHEAKKMMEMEEVVSV--SRNQYRKLHTTKSWDFVGLPLTAKRHL------------ 133
Query: 139 ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYY 198
+ +DVI+G++D G+ P+S+SF D G+GP P WKG C G N + CN KIIGA+Y+
Sbjct: 134 -KAERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSC--GPYKNFTGCNNKIIGAKYF 190
Query: 199 LKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 258
+ G + A E RSP D+DGHGTHT+STVAG V NAS +G A GTA G P A
Sbjct: 191 -----KHDGNVPAGEV-RSPIDIDGHGTHTSSTVAGVLVANASLYG-IANGTARGAVPSA 243
Query: 259 RLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIA 318
RLA+YK CWA + C + D+LA + AI DGV ++SISIG ++ D I+
Sbjct: 244 RLAMYKVCWAR--------SGCADMDILAGFEAAIHDGVEIISISIGGPIA-DYSSDSIS 294
Query: 319 IGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 378
+G+ +A++ IL SAGN GP+ +++N PW++TV A +DR F + LG G G
Sbjct: 295 VGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSG 354
Query: 379 KTVTPYNLK-KMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLS 437
++ ++ K K +PLV D + C SL +KVKGK+++C G G
Sbjct: 355 MGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGG---- 410
Query: 438 KGME--VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAI 495
G+E +K GG G I+ + N + A PAT+V I+ YI ST + +A+
Sbjct: 411 -GVESTIKSYGGAGAIIVSDQYLDNAQIFMA---PATSVNSSVGDIIYRYINSTRSASAV 466
Query: 496 IKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDK 555
I++ R V T PAPF+A+F+SRGPN +LKPDI APG++ILAA++ S + L D
Sbjct: 467 IQKTRQV--TIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDT 524
Query: 556 RIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADG 615
+ K+TI SGTSM+CPHVA AA +K+ HPDW+ AAI+SA++T+A + + N D
Sbjct: 525 QFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRR----VNKDA 580
Query: 616 SIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTN--PVFRCPNKPPSAL 673
F++G G P +AA PGLVYD Y+ +LC G++ T P+ + S++
Sbjct: 581 E----FAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSI 636
Query: 674 -------NLNYPSIAI----PNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPS 722
+LNYP+I + + + +R VTNVG SVY + + P GV + P
Sbjct: 637 VPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQ 696
Query: 723 ILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAV 774
L F QK+SF + V+ +Q + V G W H VRSP+ +
Sbjct: 697 SLSFSKASQKRSFKVVVK-----AKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 155/613 (25%), Positives = 255/613 (41%), Gaps = 103/613 (16%)
Query: 69 YKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNH 128
Y+ +GFS L +E +L +++V +VYP+ K D + ++
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYK-------------TDNMKDKD--- 149
Query: 129 FNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWK-GICQTGVAFNSSL 187
+ +D +S +G N W +G K K I TGV +N
Sbjct: 150 VTISEDAVSPQMDDSAPYIGA--NDAWD---------LGYTGKGIKVAIIDTGVEYNHPD 198
Query: 188 CNKKIIGARYYLKGFEQL---YGPLNATEDDRSPR-DMDGHGTHTASTVAGRRVPNASAF 243
K +Y KG++ + Y P D PR + HGTH A TVA
Sbjct: 199 LKKNF--GQY--KGYDFVDNDYDPKETPTGD--PRGEATDHGTHVAGTVA---------- 242
Query: 244 GGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303
A GT G AP A L Y+ G + +++A ++ A++DG V+++S
Sbjct: 243 ---ANGTIKGVAPDATLLAYRVL--------GPGGSGTTENVIAGVERAVQDGADVMNLS 291
Query: 304 IGTNQPFAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDR 362
+G + N D AL+ A+ ++ S GNSGP W TVG+ R
Sbjct: 292 LGNS---LNNPDWATSTALDWAMSEGVVAVTSNGNSGPNG--------W--TVGSPGTSR 338
Query: 363 DFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPG-----SLT 417
+ + V T + + VT + + Y + V ++ E G
Sbjct: 339 EAIS--VGATQLPLNEYAVTFGSYSSAKVMGYNKEDDVKALNNKEVELVEAGIGEAKDFE 396
Query: 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYD 477
+ + GK+ + RGS + K K+AG +G+++ N+ + E + +P + +
Sbjct: 397 GKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLE 456
Query: 478 DAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN 537
D K+ +K+ T L Q +A+F+SRGP +D +++KPDI+APG+N
Sbjct: 457 DGEKLVSALKAGETKTTFKLTVSKALGEQ----VADFSSRGP-VMDTWMIKPDISAPGVN 511
Query: 538 ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALM 597
I++ + + GTSM+ PH+A A A++K P WS I++A+M
Sbjct: 512 IVSTIPTHDPDHPYGYGSK-------QGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIM 564
Query: 598 TTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKA--ADPGLVYDASYEDYLLYLCSHG 655
N A+ + ++DG + + G+G R A AD LV SY Y +L +G
Sbjct: 565 -------NTAVTLKDSDGEVYPHNAQGAGSARIMNAIKADS-LVSPGSYS-YGTFLKENG 615
Query: 656 FSFTNPVFRCPNK 668
N F N+
Sbjct: 616 NETKNETFTIENQ 628
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 132/569 (23%), Positives = 226/569 (39%), Gaps = 118/569 (20%)
Query: 58 EEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSV------YPSHPEKYSLQTTR 111
E+ + + SY + +NGFS + + +L ++ V +V YP+ + S+ +
Sbjct: 139 EQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQ 198
Query: 112 SWEFVGLDEVAKQNWNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKS--FSDEGMGP 168
+ W+++ +Y G+ +V ++D+G+ P K SD+
Sbjct: 199 AV------------WSNY----------KYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVK 236
Query: 169 VPKS----WKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224
+ KS + + G FNS + GF Y N T D + + H
Sbjct: 237 LTKSDVEKFTDTAKHGRYFNSKVP-----------YGFN--YADNNDTITDDTVDEQ--H 281
Query: 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEAD 284
G H A + A+ G + G AP A+L K + ++ T A
Sbjct: 282 GMHVAGIIG------ANGTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSA-----TTGSAT 330
Query: 285 MLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344
+++AI+D+ + G VL++S+G++ D NA + SAGNSG + S+
Sbjct: 331 LVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSA 390
Query: 345 LSNL--------------APWL---ITVGAGSLDRDFVGPVVL---GTGMEIIGKTVT-- 382
+ P T A + + D + V GTG+++ +T+
Sbjct: 391 TEGVNKDYYGLQDNEMVGTPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLS 450
Query: 383 ------PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKL 436
++ KK + + A+ + G + T KGKI + RG
Sbjct: 451 SNDFTGSFDQKKFYVVKDASGNLSKGKVADYTADA----------KGKIAIVKRGELTFA 500
Query: 437 SKGMEVKRAGGVGLILGNSPANGNEYSYDA--HYLPATAVLYDDAIKIHEYIKSTNNPTA 494
K + AG GLI+ N+ + A P + K+ +++ + + +
Sbjct: 501 DKQKYAQAAGAAGLIIVNNDGTATPVTSMALTTTFPTFGLSSVTGQKLVDWVAAHPDDSL 560
Query: 495 IIKQARTVLHTQP--APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLA 552
+K A T++ Q M++FTS GP + KPDITAPG NI WS ++
Sbjct: 561 GVKIALTLVPNQKYTEDKMSDFTSYGP--VSNLSFKPDITAPGGNI---WSTQNNNG--- 612
Query: 553 FDKRIVKYTIFSGTSMSCPHVAAAAALLK 581
YT SGTSM+ P +A + ALLK
Sbjct: 613 -------YTNMSGTSMASPFIAGSQALLK 634
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 133/572 (23%), Positives = 221/572 (38%), Gaps = 124/572 (21%)
Query: 58 EEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSV------YPSHPEKYSLQTTR 111
E+ + + SY + +NGFS + + +L ++ V +V YP+ + S+ +
Sbjct: 139 EQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQ 198
Query: 112 SWEFVGLDEVAKQNWNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKS--FSDEGMGP 168
+ W+++ +Y G+ +V ++D+G+ P K SD+
Sbjct: 199 AV------------WSNY----------KYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVK 236
Query: 169 VPKS----WKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224
+ KS + + G FNS + GF Y N T D + + H
Sbjct: 237 LTKSDVEKFTDTAKHGRYFNSKVP-----------YGFN--YADNNDTITDDTVDEQ--H 281
Query: 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEAD 284
G H A + A+ G + G AP A+L K + S G++
Sbjct: 282 GMHVAGIIG------ANGTGDDPAKSVVGVAPEAQLLAMK-VFTNSDTSATTGSST---- 330
Query: 285 MLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344
+++AI+D+ + G VL++S+G++ D NA + SAGNSG + S+
Sbjct: 331 LVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSA 390
Query: 345 LSNLAPWLITVGAGSLDRDFVGP---------VVLGTGMEIIGKTVTPYNLKKMHPLVYA 395
+ G D + VG V ++I + VT + +
Sbjct: 391 TEGVNKDYY----GLQDNEMVGTPGTSRGATTVASAENTDVITQAVTITDGTGLQ----- 441
Query: 396 ADVVVPGVHQNETNQCLPGSLTPEK----------------------VKGKIVLCMRGSG 433
+ PG Q +N GS +K KGKI + RG
Sbjct: 442 ---LGPGTIQLSSND-FTGSFDQKKFYVVKDASGNLSKGALADYTADAKGKIAIVKRGEL 497
Query: 434 FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDA--HYLPATAVLYDDAIKIHEYIKSTNN 491
K + AG GLI+ N+ + A P + K+ +++ + +
Sbjct: 498 SFDDKQKYAQAAGAAGLIIVNNDGTATPVTSMALTTTFPTFGLSSVTGQKLVDWVTAHPD 557
Query: 492 PTAIIKQARTVLHTQP--APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPS 549
+ +K A T++ Q M++FTS GP + KPDITAPG NI WS ++
Sbjct: 558 DSLGVKIALTLVPNQKYTEDKMSDFTSYGP--VSNLSFKPDITAPGGNI---WSTQNNNG 612
Query: 550 KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLK 581
YT SGTSM+ P +A + ALLK
Sbjct: 613 ----------YTNMSGTSMASPFIAGSQALLK 634
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 131/569 (23%), Positives = 225/569 (39%), Gaps = 118/569 (20%)
Query: 58 EEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSV------YPSHPEKYSLQTTR 111
E+ + + SY + +NGFS + + +L ++ V +V YP+ + S+ +
Sbjct: 139 EQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQ 198
Query: 112 SWEFVGLDEVAKQNWNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKS--FSDEGMGP 168
+ W+++ +Y G+ +V ++D+G+ P K SD+
Sbjct: 199 AV------------WSNY----------KYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVK 236
Query: 169 VPKS----WKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224
+ KS + + G FNS + GF Y N T D + + H
Sbjct: 237 LTKSDVEKFTDTAKHGRYFNSKVP-----------YGFN--YADNNDTITDDTVDEQ--H 281
Query: 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEAD 284
G H A + A+ G + G AP A+L K + ++ T A
Sbjct: 282 GMHVAGIIG------ANGTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSA-----TTGSAT 330
Query: 285 MLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344
+++AI+D+ + G VL++S+G++ D NA + SAGNSG + S+
Sbjct: 331 LVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSA 390
Query: 345 LSNL--------------APWL---ITVGAGSLDRDFVGPVVL---GTGMEIIGKTVT-- 382
+ +P T A + + D + V GTG+++ +T+
Sbjct: 391 TEGVNKDYYGLQDNEMVGSPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLS 450
Query: 383 ------PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKL 436
++ KK + + A+ + G + T KGKI + RG
Sbjct: 451 SHDFTGSFDQKKFYIVKDASGNLSKGALADYTADA----------KGKIAIVKRGEFSFD 500
Query: 437 SKGMEVKRAGGVGLILGNSPANGNEYSYDA--HYLPATAVLYDDAIKIHEYIKSTNNPTA 494
K + AG GLI+ N+ + A P + K+ +++ + + +
Sbjct: 501 DKQKYAQAAGAAGLIIVNTDGTATPMTSIALTTTFPTFGLSSVTGQKLVDWVTAHPDDSL 560
Query: 495 IIKQARTVLHTQP--APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLA 552
+K +L Q M++FTS GP + KPDITAPG NI WS ++
Sbjct: 561 GVKITLAMLPNQKYTEDKMSDFTSYGP--VSNLSFKPDITAPGGNI---WSTQNNNG--- 612
Query: 553 FDKRIVKYTIFSGTSMSCPHVAAAAALLK 581
YT SGTSM+ P +A + ALLK
Sbjct: 613 -------YTNMSGTSMASPFIAGSQALLK 634
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 130/572 (22%), Positives = 216/572 (37%), Gaps = 124/572 (21%)
Query: 58 EEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSV------YPSHPEKYSLQTTR 111
E+ + + SY + +NGFS + + +L ++ V +V YP+ + S+ +
Sbjct: 139 EQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQ 198
Query: 112 SWEFVGLDEVAKQNWNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKS--FSDEGMGP 168
+ W+++ +Y G+ +V ++D G+ P K SD+
Sbjct: 199 AV------------WSNY----------KYKGEGTVVSVIDTGIDPTHKDMRLSDDKDVK 236
Query: 169 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLK----GFEQLYGPLNATEDDRSPRDMDGH 224
+ K ++ RY+ GF Y N T D + + H
Sbjct: 237 LTK-----------YDVEKFTDTAKHGRYFTSKVPYGFN--YADNNDTITDDTVDEQ--H 281
Query: 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEAD 284
G H A + A+ G + G AP A+L K + ++ T A
Sbjct: 282 GMHVAGIIG------ANGTGDDPTKSVVGVAPEAQLLAMKVFTNSDTSA-----TTGSAT 330
Query: 285 MLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344
+++AI+D+ + G VL++S+G++ D NA + SAGNSG + S+
Sbjct: 331 LVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPEIAAVQNANESGTAAVISAGNSGTSGSA 390
Query: 345 LSNLAPWLITVGAGSLDRDFVGP---------VVLGTGMEIIGKTVTPYNLKKMHPLVYA 395
+ G D + VG V ++I + VT + K +
Sbjct: 391 TQGVNKDYY----GLQDNEMVGTPGTSRGATTVASAENTDVISQAVTITDGKDLQ----- 441
Query: 396 ADVVVPGVHQNETNQCLPGSLTPEK----------------------VKGKIVLCMRGSG 433
+ P Q +N GS +K KGKI + RG
Sbjct: 442 ---LGPETIQLSSND-FTGSFDQKKFYVVKDASGDLSKGAAADYTADAKGKIAIVKRGEL 497
Query: 434 FKLSKGMEVKRAGGVGLILGNSPANGNEYSYD--AHYLPATAVLYDDAIKIHEYIKSTNN 491
K + AG GLI+ N+ + P + K+ +++ + +
Sbjct: 498 NFADKQKYAQAAGAAGLIIVNNDGTATPLTSIRLTTTFPTFGLSSKTGQKLVDWVTAHPD 557
Query: 492 PTAIIKQARTVLHTQP--APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPS 549
+ +K A T+L Q M++FTS GP + KPDITAPG NI WS ++
Sbjct: 558 DSLGVKIALTLLPNQKYTEDKMSDFTSYGP--VSNLSFKPDITAPGGNI---WSTQNNNG 612
Query: 550 KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLK 581
YT SGTSM+ P +A + ALLK
Sbjct: 613 ----------YTNMSGTSMASPFIAGSQALLK 634
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI-VKYTIFSGTSMS 569
+A+F+SRGP KPDI APG+NI++ S S KL R+ +Y SGTSM+
Sbjct: 329 VASFSSRGPTVYGKE--KPDILAPGVNIISLRSPNSYIDKLQKSSRVGSQYFTMSGTSMA 386
Query: 570 CPHVAAAAALLKAIHPDWSSAAIRSALM--TTAW 601
P A AAL+ +PD + ++ L T W
Sbjct: 387 TPICAGIAALILQQNPDLTPDEVKELLKNGTDKW 420
|
Displays serine protease activity. Seems to have a broad substrate specificity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 777 | ||||||
| 255562582 | 776 | Xylem serine proteinase 1 precursor, put | 0.971 | 0.972 | 0.700 | 0.0 | |
| 224116492 | 775 | predicted protein [Populus trichocarpa] | 0.971 | 0.974 | 0.689 | 0.0 | |
| 225462458 | 778 | PREDICTED: subtilisin-like protease-like | 0.970 | 0.969 | 0.671 | 0.0 | |
| 359483572 | 777 | PREDICTED: subtilisin-like protease-like | 0.970 | 0.970 | 0.671 | 0.0 | |
| 297791157 | 791 | subtilase family protein [Arabidopsis ly | 0.978 | 0.960 | 0.637 | 0.0 | |
| 15242456 | 791 | subtilase family protein [Arabidopsis th | 0.978 | 0.960 | 0.64 | 0.0 | |
| 147784535 | 860 | hypothetical protein VITISV_036029 [Viti | 0.956 | 0.863 | 0.644 | 0.0 | |
| 297740588 | 740 | unnamed protein product [Vitis vinifera] | 0.921 | 0.967 | 0.634 | 0.0 | |
| 449434276 | 791 | PREDICTED: subtilisin-like protease-like | 0.972 | 0.955 | 0.588 | 0.0 | |
| 297740593 | 724 | unnamed protein product [Vitis vinifera] | 0.904 | 0.970 | 0.621 | 0.0 |
| >gi|255562582|ref|XP_002522297.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223538550|gb|EEF40155.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/758 (70%), Positives = 622/758 (82%), Gaps = 3/758 (0%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
QK+VYIV+FG +G+KALHEI+ETH SYL SVK+ E EAR S LYSYK+SINGFSA+LT
Sbjct: 20 QKKVYIVYFG-EHSGDKALHEIEETHVSYLFSVKETEREARDSLLYSYKNSINGFSALLT 78
Query: 82 PDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAK--QNWNHFNMGQDLLSKA 139
P++A++LS+LEEV SV SHP KYS+QTTRSWEFVGL+E + + +HF++ ++L +A
Sbjct: 79 PEQASKLSQLEEVKSVIESHPRKYSVQTTRSWEFVGLEEGEEVHHSNSHFDLERELPFRA 138
Query: 140 RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYL 199
YG+ VIVG++D+GVWPESKSFSDEGMGP+PKSWKGICQ G FNSS CNKKIIGARYY+
Sbjct: 139 GYGKRVIVGVMDSGVWPESKSFSDEGMGPIPKSWKGICQAGPGFNSSHCNKKIIGARYYI 198
Query: 200 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 259
K FEQ G LN +ED RSPRDMDGHGTHTASTVAG RV +A+A+GGFA GTASGGAPLA
Sbjct: 199 KAFEQDNGALNVSEDSRSPRDMDGHGTHTASTVAGNRVHDAAAYGGFARGTASGGAPLAH 258
Query: 260 LAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAI 319
LAIYKACWA P KA GNTC+EADMLAAIDDAI DGVHVLS+SIGT QP + +DGIAI
Sbjct: 259 LAIYKACWALPNQEKANGNTCYEADMLAAIDDAIADGVHVLSMSIGTTQPVPYEQDGIAI 318
Query: 320 GALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGK 379
GA +A K NI+VAC+AGN+GPAPS+LSN APW+ITVGA ++DR F+GP+VLG G I+G+
Sbjct: 319 GAFHAAKKNIVVACAAGNAGPAPSTLSNPAPWIITVGASTVDRAFLGPIVLGNGKTIMGQ 378
Query: 380 TVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 439
TVTP L KM+PLVYAAD+V PGV QNETNQCLP SL+P+KVKGKIVLCMRG+G ++ KG
Sbjct: 379 TVTPDKLDKMYPLVYAADMVAPGVLQNETNQCLPNSLSPDKVKGKIVLCMRGAGMRVGKG 438
Query: 440 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQA 499
MEVKRAGGVG ILGNSPANGN+ S DAH LP TAV D AI+I +YIKST NPTA I +A
Sbjct: 439 MEVKRAGGVGYILGNSPANGNDVSVDAHVLPGTAVTSDQAIEILKYIKSTENPTATIGKA 498
Query: 500 RTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVK 559
+TVLH PAP MA F+SRGPN +DP ILKPDI+APG+NILAAWS AS P+KL+ D R VK
Sbjct: 499 KTVLHYSPAPSMAAFSSRGPNVIDPNILKPDISAPGVNILAAWSGASPPTKLSTDNRTVK 558
Query: 560 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 619
+ I SGTSM+CPHVAAAAALLKAIHP WSSAAIRSA+MTTAWMKNNK PIT+ G AT
Sbjct: 559 FNIDSGTSMACPHVAAAAALLKAIHPTWSSAAIRSAIMTTAWMKNNKGQPITDPSGEPAT 618
Query: 620 PFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPS 679
PF FGSG FRP KAADPGLVYDA+Y+DY+ YLC++G +P ++CP + A NLNYPS
Sbjct: 619 PFQFGSGQFRPAKAADPGLVYDATYKDYVHYLCNYGLKDIDPKYKCPTELSPAYNLNYPS 678
Query: 680 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 739
IAIP LNGTV +KR+V NVG S SVYFF+AKPPMG SVKA+PSIL F+H+ QKKSFTI +
Sbjct: 679 IAIPRLNGTVTIKRSVRNVGASNSVYFFTAKPPMGFSVKASPSILNFNHVNQKKSFTIRI 738
Query: 740 RLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 777
E ++ +Y FGWY WTD H VRSP+AVS A
Sbjct: 739 TANPEMAKKHQKDEYAFGWYTWTDSFHYVRSPIAVSLA 776
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116492|ref|XP_002317314.1| predicted protein [Populus trichocarpa] gi|222860379|gb|EEE97926.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/759 (68%), Positives = 608/759 (80%), Gaps = 4/759 (0%)
Query: 21 KQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVL 80
++KQVYIV+FG G+KALHEI+E H SYL VK EEEA AS LYSYKHSINGF+A+L
Sbjct: 19 EEKQVYIVYFG-EHKGDKALHEIEEFHQSYLYGVKQTEEEATASLLYSYKHSINGFAALL 77
Query: 81 TPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNH-FNMGQDLLSKA 139
PDEA++LSEL+EVVSV+ S+P KYS+QTTRSW F GL+E N NH F G+DLL +A
Sbjct: 78 NPDEASKLSELKEVVSVFKSNPRKYSVQTTRSWRFAGLEEEG-HNVNHGFGGGRDLLKRA 136
Query: 140 RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYL 199
YG+ VIVGL+D+GVWPES+SF DEGMGP+PKSWKGICQ G FNSS CNKKIIGARYY+
Sbjct: 137 GYGKQVIVGLLDSGVWPESQSFRDEGMGPIPKSWKGICQNGPDFNSSHCNKKIIGARYYI 196
Query: 200 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 259
KGFE YGPLN TED RSPRD DGHGTHTAST G RV NA+A GGFA GTA+GGAPLA
Sbjct: 197 KGFENYYGPLNRTEDSRSPRDKDGHGTHTASTAVGSRVKNAAALGGFARGTATGGAPLAH 256
Query: 260 LAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAI 319
LAIYK CWA P KA GNTCFE DMLAAIDDAI DGVH++SISIGT +P DGIAI
Sbjct: 257 LAIYKVCWAIPNQEKADGNTCFEEDMLAAIDDAIGDGVHIMSISIGTREPTPLKEDGIAI 316
Query: 320 GALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGK 379
GA +A+K NI+VAC+AGN GPAPS+LSN +PW+ITVGA +DR F GP+VLG GM+I G+
Sbjct: 317 GAFHALKKNIVVACAAGNEGPAPSTLSNPSPWIITVGASGVDRAFFGPLVLGNGMKIEGQ 376
Query: 380 TVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 439
TVTPY L K PLV+AAD V V +N T+QCLP SL+P KVKGKIVLCMRGSG +++KG
Sbjct: 377 TVTPYKLDKDCPLVFAADAVASNVPENVTSQCLPNSLSPRKVKGKIVLCMRGSGMRVAKG 436
Query: 440 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQA 499
MEVKRAGG G ILGNS ANGN+ DAH LPAT+V Y+DA+KI YI+ST NP A I A
Sbjct: 437 MEVKRAGGFGFILGNSQANGNDVIVDAHVLPATSVGYNDAMKILNYIRSTKNPMARIGIA 496
Query: 500 RTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVK 559
RT+L +PAP MA+FTSRGPN + P ILKPDITAPG+NILAAWS A++PSKL DKR+V+
Sbjct: 497 RTILQYRPAPVMASFTSRGPNVIHPSILKPDITAPGVNILAAWSGATAPSKLYEDKRLVR 556
Query: 560 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 619
Y I SGTSM+CPHVAAAAALL+AIHP+WSSAAIRSALMTTAWMKNN PI + G+ AT
Sbjct: 557 YNIISGTSMACPHVAAAAALLRAIHPEWSSAAIRSALMTTAWMKNNMGQPIADQSGNAAT 616
Query: 620 PFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPS 679
PF FGSGHFRP KAADPGLVYDASY DYLLYLCS+G P F+CP PS N NYPS
Sbjct: 617 PFQFGSGHFRPAKAADPGLVYDASYTDYLLYLCSYGVKNVYPKFKCPAVSPSIYNFNYPS 676
Query: 680 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 739
+++P LNGT+ + RTVTNVG S SVYFFSA+PP+G +VKA+PS+LFF+H+GQKKSF IT+
Sbjct: 677 VSLPKLNGTLNITRTVTNVGASSSVYFFSARPPLGFAVKASPSVLFFNHVGQKKSFIITI 736
Query: 740 RLGSETTRQGLTK-QYVFGWYRWTDGLHLVRSPMAVSFA 777
+ ++ G K +Y FGWY W++G H VRSPMAVS A
Sbjct: 737 KAREDSMSNGHNKGEYAFGWYTWSNGHHYVRSPMAVSLA 775
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462458|ref|XP_002269375.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/761 (67%), Positives = 606/761 (79%), Gaps = 7/761 (0%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
+++VYIV+FGG +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+
Sbjct: 20 ERKVYIVYFGG-HSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLS 78
Query: 82 PDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDE-VAKQNWNHFNMGQDLLSKAR 140
P EA +LSE++EVVSV+PS +K++L TTRSWEFVGL++ + ++ ++LL KAR
Sbjct: 79 PQEATKLSEMDEVVSVFPSQRKKHTLHTTRSWEFVGLEKGLGREQLKKQKKTRNLLEKAR 138
Query: 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 200
YG +IVG+VDNGVWPESKSFSDEGMGP+PKSWKGICQTGVAFNSS CN+K+IGARYYLK
Sbjct: 139 YGDQIIVGMVDNGVWPESKSFSDEGMGPIPKSWKGICQTGVAFNSSDCNRKLIGARYYLK 198
Query: 201 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 260
G+E GPLN T D RSPRD DGHGTHTASTVAGRRV N SA G +A GTASGGAPLARL
Sbjct: 199 GYESDNGPLNTTTDYRSPRDKDGHGTHTASTVAGRRVHNVSALG-YAPGTASGGAPLARL 257
Query: 261 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIG 320
AIYK CW P +K GNTC+E DMLAAIDDAI DGVHVLSISIGT+ PF + +DGIAIG
Sbjct: 258 AIYKVCWPIPGQTKVKGNTCYEEDMLAAIDDAIADGVHVLSISIGTSTPFTYAKDGIAIG 317
Query: 321 ALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 380
AL+A K+NI+VACSAGNSGP PS+LSN APW+ITVGA S+DR FV P+VLG GM+++G++
Sbjct: 318 ALHATKNNIVVACSAGNSGPGPSTLSNPAPWIITVGASSVDRAFVTPLVLGNGMKLMGES 377
Query: 381 VTPYNLKK-MHPLVYAADVVVPGVHQNETN-QCLPGSLTPEKVKGKIVLCMRGS-GFKLS 437
VTPY LKK M+PLV+AADVVVPGV +N T C GSL P+KVKGK+VLC+RG ++
Sbjct: 378 VTPYKLKKKMYPLVFAADVVVPGVPKNNTAANCNFGSLDPKKVKGKLVLCLRGGIALRIE 437
Query: 438 KGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 497
KG+EVKRAGGVG ILGN+P NG + D H LPATAV +D KI YIKST P A I
Sbjct: 438 KGIEVKRAGGVGFILGNTPENGFDLPADPHLLPATAVSSEDVTKIRNYIKSTKKPMATII 497
Query: 498 QARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI 557
RTVLH +PAPFMA+FTSRGPN +DP ILKPDIT PGLNILAAWSE SSP++ D R+
Sbjct: 498 PGRTVLHAKPAPFMASFTSRGPNTIDPNILKPDITGPGLNILAAWSEGSSPTRSELDPRV 557
Query: 558 VKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSI 617
VKY IFSGTSMSCPHVAAA ALLKAIHP+WSSAAIRSALMTTA + NN PIT++ G+
Sbjct: 558 VKYNIFSGTSMSCPHVAAAVALLKAIHPNWSSAAIRSALMTTAGLVNNIGKPITDSSGNP 617
Query: 618 ATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNY 677
A PF +GSGHFRPTKAADPGLVYD +Y DYLLYLC+ G + F CP PS+ NLNY
Sbjct: 618 ANPFQYGSGHFRPTKAADPGLVYDTTYTDYLLYLCNIGVKSLDSSFNCPKVSPSSNNLNY 677
Query: 678 PSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTI 737
PS+ I L V + RTVTNVG ++S+YF S K P+G SV+ PSIL+F+H+GQKKSF I
Sbjct: 678 PSLQISKLKRKVTITRTVTNVGSARSIYFSSVKSPVGFSVRVEPSILYFNHVGQKKSFCI 737
Query: 738 TVRLGS-ETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 777
TV + + +++ ++Y FGWY W DG+H VRSPMAVS A
Sbjct: 738 TVEARNPKASKKNDAEEYAFGWYTWNDGIHNVRSPMAVSLA 778
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483572|ref|XP_002269555.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/760 (67%), Positives = 599/760 (78%), Gaps = 6/760 (0%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
+++VYIV+FG +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+
Sbjct: 20 ERKVYIVYFG-EHSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLS 78
Query: 82 PDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLD-EVAKQNWNHFNMGQDLLSKAR 140
P E +LSE++EVVSV+PS +K++L TTRSWEFVGL+ E+ ++ ++LL KAR
Sbjct: 79 PHEVTKLSEMDEVVSVFPSQRKKHTLHTTRSWEFVGLEKELGREQLKKQKKTRNLLEKAR 138
Query: 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 200
YG +IVG+VDNGVWPESKSFSDEGMGP+PKSWKGICQTGVAFNSS CN+K+IGARYYLK
Sbjct: 139 YGDQIIVGMVDNGVWPESKSFSDEGMGPIPKSWKGICQTGVAFNSSHCNRKLIGARYYLK 198
Query: 201 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 260
G+E GPLN T D RSPRD DGHGTHTASTVAGRRV N SA G +A GTASGGAPLARL
Sbjct: 199 GYESDNGPLNTTTDYRSPRDKDGHGTHTASTVAGRRVHNVSALG-YAPGTASGGAPLARL 257
Query: 261 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIG 320
AIYK CW P +K GNTC+E DMLAAIDDAI DGVHVLSISIGT+QPF + +DGIAIG
Sbjct: 258 AIYKVCWPIPGQTKVKGNTCYEEDMLAAIDDAIADGVHVLSISIGTSQPFTYAKDGIAIG 317
Query: 321 ALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 380
AL+A K+NI+VACSAGNSGPAPS+LSN APW+ITVGA S+DR FV P+VLG GM+++G++
Sbjct: 318 ALHATKNNIVVACSAGNSGPAPSTLSNPAPWIITVGASSIDRAFVTPLVLGNGMKLMGQS 377
Query: 381 VTPYNLKK-MHPLVYAADVVVPGVHQNETN-QCLPGSLTPEKVKGKIVLCMRGS-GFKLS 437
VTPY LKK M+PLV+AAD VVPGV +N T C GSL P+KVKGKIVLC+RG ++
Sbjct: 378 VTPYKLKKKMYPLVFAADAVVPGVPKNNTAANCNFGSLDPKKVKGKIVLCLRGGMTLRIE 437
Query: 438 KGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 497
KG+EVKRAGGVG ILGN+P NG + D H LPATAV +D KI YIKST P A I
Sbjct: 438 KGIEVKRAGGVGFILGNTPENGFDLPADPHLLPATAVSSEDVTKIRNYIKSTKKPMATII 497
Query: 498 QARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI 557
RTVLH +PAPFMA+F SRGPN +DP ILKPDIT PGLNILAAWSE SSP++ D R+
Sbjct: 498 PGRTVLHAKPAPFMASFISRGPNTIDPNILKPDITGPGLNILAAWSEGSSPTRSELDPRV 557
Query: 558 VKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSI 617
VKY IFSGTSMSCPHVAAA ALLKAIHP+WSSAAIRSALMTTA + NN PIT++ G+
Sbjct: 558 VKYNIFSGTSMSCPHVAAAVALLKAIHPNWSSAAIRSALMTTAGLVNNIGKPITDSSGNP 617
Query: 618 ATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNY 677
PF +GSGHFRPTKAADPGLVYD +Y DYLLYLC+ G + F+CP PS+ NLNY
Sbjct: 618 TNPFQYGSGHFRPTKAADPGLVYDTTYTDYLLYLCNIGVKSLDSSFKCPKVSPSSNNLNY 677
Query: 678 PSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTI 737
PS+ I L V V RT TNVG ++S+YF S K P+G SV+ PSIL+F+H+GQKKSF I
Sbjct: 678 PSLQISKLKRKVTVTRTATNVGSARSIYFSSVKSPVGFSVRVEPSILYFNHVGQKKSFDI 737
Query: 738 TVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 777
TV + + +Y FGWY W DG+H VRSPMAVS A
Sbjct: 738 TVEARNPKASKKNDTEYAFGWYTWNDGIHNVRSPMAVSLA 777
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791157|ref|XP_002863463.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] gi|297309298|gb|EFH39722.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/775 (63%), Positives = 593/775 (76%), Gaps = 15/775 (1%)
Query: 17 SSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGF 76
+S ++KQVYIV+FG G+KALHEI+E HHSYL SVK++EE+ARAS LYSYKHSINGF
Sbjct: 18 ASCAEEKQVYIVYFG-EHKGDKALHEIEEHHHSYLQSVKESEEDARASLLYSYKHSINGF 76
Query: 77 SAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNW---------N 127
+A LTPD+A++L +L EVVS++ SHP KY TTRSWEFVGL+E + +
Sbjct: 77 AAELTPDQASKLEKLAEVVSIFKSHPRKYEAHTTRSWEFVGLEEEETDSDVPRRKNDADD 136
Query: 128 HFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSL 187
F +G++ L KA++G +IVG++D+GVWPESKSF+D+GMGPVPKSWKGICQTGVAFNSS
Sbjct: 137 RFRVGRNFLKKAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSH 196
Query: 188 CNKKIIGARYYLKGFEQLYGPLNATE--DDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 245
CN+KIIGARYY+KG+E+ +G N TE D SPRD DGHG+HTAST GRRV ASA GG
Sbjct: 197 CNRKIIGARYYVKGYERYFGAFNVTETKDFLSPRDPDGHGSHTASTAVGRRVYGASALGG 256
Query: 246 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 305
FA G+ASGGAPLARLAIYKACWA P K GNTC E DMLAAIDDAI DGVHV+SISIG
Sbjct: 257 FAMGSASGGAPLARLAIYKACWAKPNVEKIEGNTCLEEDMLAAIDDAIADGVHVISISIG 316
Query: 306 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 365
T++P+ F +DGIA+GAL+AVK NI+VA SAGNSGP P +LSN+APW+ITVGA +LDR F+
Sbjct: 317 TSEPYPFLQDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNMAPWIITVGASTLDRVFI 376
Query: 366 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKI 425
G +VLG G I ++T + + K PLVYAA+VVVPG+ N+++QCLP SL PE V GK+
Sbjct: 377 GGLVLGNGYTIKTNSITAFKMDKFAPLVYAANVVVPGIALNDSSQCLPNSLKPELVTGKV 436
Query: 426 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEY 485
VLC+RG+G ++ KG+EVKRAGG G+ILGN ANGNE D+H++P V KI EY
Sbjct: 437 VLCLRGAGTRIGKGIEVKRAGGAGMILGNVAANGNEIPTDSHFVPTAGVTPTVVDKILEY 496
Query: 486 IKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEA 545
IK+ NP A IK +TV Q AP M F+SRGPN LDP ILKPDITAPGLNILAAWS A
Sbjct: 497 IKTDKNPMAFIKPGKTVYKYQAAPSMTGFSSRGPNVLDPNILKPDITAPGLNILAAWSGA 556
Query: 546 SSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNN 605
SPSK++ D+R+ Y I+SGTSMSCPHVA A ALLKAIHP WSSAAIRSALMT+AWM N+
Sbjct: 557 DSPSKMSVDQRVADYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTSAWMTND 616
Query: 606 KALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRC 665
K PI + G A PF+ GSGHFRPTKAADPGLVYDASY YLLY CS + +P F+C
Sbjct: 617 KKKPIQDTTGLPANPFALGSGHFRPTKAADPGLVYDASYRAYLLYGCSVNITNIDPTFKC 676
Query: 666 PNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNV--GGSKSVYFFSAKPPMGVSVKANPSI 723
P+K P N NYPSIA+PNLN TV VKRTVTNV G S S Y FSAKPP GVSVKA P++
Sbjct: 677 PSKIPPGYNHNYPSIAVPNLNKTVTVKRTVTNVGNGNSTSTYLFSAKPPSGVSVKAIPNV 736
Query: 724 LFFDHIGQKKSFTITVR-LGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 777
LFF+ IGQK+ F I ++ L ++ QY FGW+ WTD +H+VRSP+AVS A
Sbjct: 737 LFFNRIGQKQRFKIVIKPLKNQVMNATEKGQYQFGWFSWTDKVHVVRSPIAVSLA 791
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242456|ref|NP_199378.1| subtilase family protein [Arabidopsis thaliana] gi|9758669|dbj|BAB09208.1| subtilisin-like protease [Arabidopsis thaliana] gi|26451161|dbj|BAC42684.1| putative subtilisin-like protease [Arabidopsis thaliana] gi|28973549|gb|AAO64099.1| putative subtilisin [Arabidopsis thaliana] gi|332007897|gb|AED95280.1| subtilase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/775 (64%), Positives = 589/775 (76%), Gaps = 15/775 (1%)
Query: 17 SSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGF 76
+S ++KQVYIV+FG G+KA HEI+E HHSYL SVK++EE+ARAS LYSYKHSINGF
Sbjct: 18 ASCAEEKQVYIVYFG-EHKGDKAFHEIEEHHHSYLQSVKESEEDARASLLYSYKHSINGF 76
Query: 77 SAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNW---------N 127
+A LTPD+A++L +L EVVSV+ SHP KY TTRSWEFVGL+E + +
Sbjct: 77 AAELTPDQASKLEKLAEVVSVFKSHPRKYEAHTTRSWEFVGLEEEETDSDVPRRKNDADD 136
Query: 128 HFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSL 187
F +G++ L KA++G +IVG++D+GVWPESKSF+D+GMGPVPKSWKGICQTGVAFNSS
Sbjct: 137 RFRVGRNFLKKAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSH 196
Query: 188 CNKKIIGARYYLKGFEQLYGPLNAT--EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 245
CN+KIIGARYY+KG+E+ YG NAT +D SPRD DGHG+HTAST GRRV ASA GG
Sbjct: 197 CNRKIIGARYYVKGYERYYGAFNATANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGG 256
Query: 246 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 305
FA+G+ASGGAPLARLAIYKACWA P A K GN C E DMLAAIDDAI DGVHV+SISIG
Sbjct: 257 FAKGSASGGAPLARLAIYKACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIG 316
Query: 306 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 365
T +PF F +DGIA+GAL+AVK NI+VA SAGNSGP P +LSNLAPW+ITVGA +LDR FV
Sbjct: 317 TTEPFPFTQDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFV 376
Query: 366 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKI 425
G +VLG G I ++T + + K PLVYA++VVVPG+ NET+QCLP SL PE V GK+
Sbjct: 377 GGLVLGNGYTIKTDSITAFKMDKFAPLVYASNVVVPGIALNETSQCLPNSLKPELVSGKV 436
Query: 426 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEY 485
VLC+RG+G ++ KGMEVKRAGG G+ILGN ANGNE D+H++P V KI EY
Sbjct: 437 VLCLRGAGSRIGKGMEVKRAGGAGMILGNIAANGNEVPSDSHFVPTAGVTPTVVDKILEY 496
Query: 486 IKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEA 545
IK+ NP A IK +TV Q AP M F+SRGPN +DP ILKPDITAPGL ILAAWS A
Sbjct: 497 IKTDKNPKAFIKPGKTVYKYQAAPSMTGFSSRGPNVVDPNILKPDITAPGLYILAAWSGA 556
Query: 546 SSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNN 605
SPSK++ D+R+ Y I+SGTSMSCPHVA A ALLKAIHP WSSAAIRSALMTTAWM N+
Sbjct: 557 DSPSKMSVDQRVAGYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTTAWMTND 616
Query: 606 KALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRC 665
K PI + G A PF+ GSGHFRPTKAADPGLVYDASY YLLY CS + +P F+C
Sbjct: 617 KKKPIQDTTGLPANPFALGSGHFRPTKAADPGLVYDASYRAYLLYGCSVNITNIDPTFKC 676
Query: 666 PNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNV--GGSKSVYFFSAKPPMGVSVKANPSI 723
P+K P N NYPSIA+PNL TV VKRTVTNV G S S Y FS KPP G+SVKA P+I
Sbjct: 677 PSKIPPGYNHNYPSIAVPNLKKTVTVKRTVTNVGTGNSTSTYLFSVKPPSGISVKAIPNI 736
Query: 724 LFFDHIGQKKSFTITVR-LGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 777
L F+ IGQK+ F I ++ L ++ QY FGW+ WTD +H+VRSP+AVS A
Sbjct: 737 LSFNRIGQKQRFKIVIKPLKNQVMNATEKGQYQFGWFSWTDKVHVVRSPIAVSLA 791
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147784535|emb|CAN61728.1| hypothetical protein VITISV_036029 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/776 (64%), Positives = 589/776 (75%), Gaps = 33/776 (4%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
+++VYIV+F G +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+
Sbjct: 20 ERKVYIVYF-GEHSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLS 78
Query: 82 PDEAARLS---------------------------ELEEVVSVYPSHPEKYSLQTTRSWE 114
P E +LS E++EVVSV+PS +K++L TTRSWE
Sbjct: 79 PHEVTKLSGKTKRSNGSAFIFSLMANKSNSFSFPTEMDEVVSVFPSQRKKHTLHTTRSWE 138
Query: 115 FVGLD-EVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSW 173
FVGL+ E+ ++ ++LL KARYG +IVG+VDNGVWPESKSFSDEGMGP+PKSW
Sbjct: 139 FVGLEKELGREQLKKQKKTRNLLEKARYGDQIIVGMVDNGVWPESKSFSDEGMGPIPKSW 198
Query: 174 KGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVA 233
KGICQTGVAFNSS CN+K+IGARYYLKG+E GPLN T D RSPRD DGHGTHTASTVA
Sbjct: 199 KGICQTGVAFNSSHCNRKLIGARYYLKGYESDNGPLNTTTDYRSPRDKDGHGTHTASTVA 258
Query: 234 GRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293
GRRV N SA G+A GTASGGAPLARLAIYK CW P +K GNTC+E DMLAAIDDAI
Sbjct: 259 GRRVHNVSAL-GYAPGTASGGAPLARLAIYKVCWPIPGQTKVKGNTCYEEDMLAAIDDAI 317
Query: 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLI 353
DGVHVLSISIGT+QPF + +DGIAIGAL+A K+NI+VACSAGNSGPAPS+LSN APW+I
Sbjct: 318 ADGVHVLSISIGTSQPFTYAKDGIAIGALHATKNNIVVACSAGNSGPAPSTLSNPAPWII 377
Query: 354 TVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNL-KKMHPLVYAADVVVPGVHQNET-NQC 411
TVGA S+DR FV P+VLG GM+++G++VTPY L KKM+PLV+AAD VVPGV +N T C
Sbjct: 378 TVGASSIDRAFVTPLVLGNGMKLMGQSVTPYKLKKKMYPLVFAADAVVPGVPKNNTAANC 437
Query: 412 LPGSLTPEKVKGKIVLCMRGS-GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLP 470
GSL P+KVKGKIVLC+RG ++ KG+EVKRAGGVG ILGN+P NG + D H LP
Sbjct: 438 NFGSLDPKKVKGKIVLCLRGGMTLRIEKGIEVKRAGGVGFILGNTPENGFDLPADPHLLP 497
Query: 471 ATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 530
ATAV +D KI YIKST P A I TVLH +PAPFMA+F SRGPN +DP ILKPD
Sbjct: 498 ATAVSSEDVTKIRNYIKSTKKPMATIIPGXTVLHAKPAPFMASFXSRGPNTIDPNILKPD 557
Query: 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 590
IT PGLNILAAWSE SSP++ D R+VKY IFSGTSMSCPHVAAA ALLKAIHP+WSSA
Sbjct: 558 ITGPGLNILAAWSEGSSPTRSELDPRVVKYNIFSGTSMSCPHVAAAVALLKAIHPNWSSA 617
Query: 591 AIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLY 650
AIRSALMTTA + NN PIT++ G+ A PF +GSGHFRPTKAADPGLVYD +Y DYLLY
Sbjct: 618 AIRSALMTTAGLVNNIGKPITDSSGNPANPFQYGSGHFRPTKAADPGLVYDTTYTDYLLY 677
Query: 651 LCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAK 710
C+ G + F+CP PS+ NLNYPS+ I L V V RT TNVG ++S+YF S K
Sbjct: 678 HCNIGVKSLDSSFKCPKVSPSSNNLNYPSLQISKLKRKVTVTRTATNVGSARSIYFSSVK 737
Query: 711 PPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLH 766
P+G SV+ PSIL+F+H+GQKKSF ITV + + +Y FGWY W DG+H
Sbjct: 738 SPVGFSVRVEPSILYFNHVGQKKSFDITVEARNPKASKKNDTEYAFGWYTWNDGIH 793
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740588|emb|CBI30770.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/761 (63%), Positives = 577/761 (75%), Gaps = 45/761 (5%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
+++VYIV+FGG +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+
Sbjct: 20 ERKVYIVYFGG-HSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLS 78
Query: 82 PDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDE-VAKQNWNHFNMGQDLLSKAR 140
P EA +LSE++EVVSV+PS +K++L TTRSWEFVGL++ + ++ ++LL KAR
Sbjct: 79 PQEATKLSEMDEVVSVFPSQRKKHTLHTTRSWEFVGLEKGLGREQLKKQKKTRNLLEKAR 138
Query: 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 200
YG +IVG+VDNGVWPESKSFSDEGMGP+PKSWKGICQTGVAFNSS CN+K+IGARYYLK
Sbjct: 139 YGDQIIVGMVDNGVWPESKSFSDEGMGPIPKSWKGICQTGVAFNSSDCNRKLIGARYYLK 198
Query: 201 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 260
G+E GPLN T D RSPRD DGHGTHTASTVAGRRV N SA G +A GTASGGAPLA
Sbjct: 199 GYESDNGPLNTTTDYRSPRDKDGHGTHTASTVAGRRVHNVSALG-YAPGTASGGAPLA-- 255
Query: 261 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIG 320
+HVLSISIGT+ PF + +DGIAIG
Sbjct: 256 ------------------------------------LHVLSISIGTSTPFTYAKDGIAIG 279
Query: 321 ALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 380
AL+A K+NI+VACSAGNSGP PS+LSN APW+ITVGA S+DR FV P+VLG GM+++G++
Sbjct: 280 ALHATKNNIVVACSAGNSGPGPSTLSNPAPWIITVGASSVDRAFVTPLVLGNGMKLMGES 339
Query: 381 VTPYNLKK-MHPLVYAADVVVPGVHQNETN-QCLPGSLTPEKVKGKIVLCMRGS-GFKLS 437
VTPY LKK M+PLV+AADVVVPGV +N T C GSL P+KVKGK+VLC+RG ++
Sbjct: 340 VTPYKLKKKMYPLVFAADVVVPGVPKNNTAANCNFGSLDPKKVKGKLVLCLRGGIALRIE 399
Query: 438 KGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 497
KG+EVKRAGGVG ILGN+P NG + D H LPATAV +D KI YIKST P A I
Sbjct: 400 KGIEVKRAGGVGFILGNTPENGFDLPADPHLLPATAVSSEDVTKIRNYIKSTKKPMATII 459
Query: 498 QARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI 557
RTVLH +PAPFMA+FTSRGPN +DP ILKPDIT PGLNILAAWSE SSP++ D R+
Sbjct: 460 PGRTVLHAKPAPFMASFTSRGPNTIDPNILKPDITGPGLNILAAWSEGSSPTRSELDPRV 519
Query: 558 VKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSI 617
VKY IFSGTSMSCPHVAAA ALLKAIHP+WSSAAIRSALMTTA + NN PIT++ G+
Sbjct: 520 VKYNIFSGTSMSCPHVAAAVALLKAIHPNWSSAAIRSALMTTAGLVNNIGKPITDSSGNP 579
Query: 618 ATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNY 677
A PF +GSGHFRPTKAADPGLVYD +Y DYLLYLC+ G + F CP PS+ NLNY
Sbjct: 580 ANPFQYGSGHFRPTKAADPGLVYDTTYTDYLLYLCNIGVKSLDSSFNCPKVSPSSNNLNY 639
Query: 678 PSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTI 737
PS+ I L V + RTVTNVG ++S+YF S K P+G SV+ PSIL+F+H+GQKKSF I
Sbjct: 640 PSLQISKLKRKVTITRTVTNVGSARSIYFSSVKSPVGFSVRVEPSILYFNHVGQKKSFCI 699
Query: 738 TVRLGS-ETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 777
TV + + +++ ++Y FGWY W DG+H VRSPMAVS A
Sbjct: 700 TVEARNPKASKKNDAEEYAFGWYTWNDGIHNVRSPMAVSLA 740
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434276|ref|XP_004134922.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] gi|449525046|ref|XP_004169531.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/777 (58%), Positives = 586/777 (75%), Gaps = 21/777 (2%)
Query: 10 FLLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSY 69
+ ASS+ QK+ YIV+FG +GEK++ EI+E HHSYL+ VK++EE+A++ LY+Y
Sbjct: 23 LFIQQAASSSNNQKKAYIVYFG-EHHGEKSIEEIKERHHSYLMYVKESEEDAKSCLLYNY 81
Query: 70 KHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHF 129
KHSIN F+A+LTP +A++LS+L+EVVSV S +KY ++TTRSWEF G++E K N
Sbjct: 82 KHSINAFAAILTPQQASKLSDLDEVVSVIES--KKYRMETTRSWEFSGVEE-DKPTIN-- 136
Query: 130 NMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCN 189
DL+S+A YG+DV++G++D+GVWP+SKSFSD+GMGP+PKSWKGICQTG AF S+ CN
Sbjct: 137 ----DLVSRANYGKDVVIGMLDSGVWPKSKSFSDKGMGPIPKSWKGICQTGPAFQSAHCN 192
Query: 190 KKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEG 249
+KIIGARYYLKG+E +G LN T D RSP D DGHG+HTAS GRRV N SAFGG A G
Sbjct: 193 RKIIGARYYLKGYEHHFGRLNKTADYRSPCDKDGHGSHTASIAGGRRVYNVSAFGGVAWG 252
Query: 250 TASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQP 309
TASGGAP ARLAIYK CWA P KA GN CF+ DMLAA+DDAI DGV VLS+SIG ++P
Sbjct: 253 TASGGAPWARLAIYKVCWAIPNQMKALGNVCFDTDMLAAMDDAIADGVDVLSLSIGKSEP 312
Query: 310 FAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVV 369
+ + DG+AIGAL+AVK +I+V+CSAGN GP PS+LSN+APW+ITVGA ++DR+F PV+
Sbjct: 313 YNYTDDGMAIGALHAVKKDIVVSCSAGNYGPTPSALSNVAPWIITVGASTVDREFYSPVI 372
Query: 370 LGTGMEIIGKTVTPYNL--KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVL 427
LG G++I G +V P L KKM+PLVYA D++ P +N++ C+ GSL+ EK KGKIVL
Sbjct: 373 LGNGLKIKGLSVAPSKLERKKMYPLVYAGDIMNPHAPRNQSGLCVAGSLSHEKAKGKIVL 432
Query: 428 CMRGSGF-KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYI 486
C RG G + + +EV+R+GG G+ILGN PA G D H++PATAV Y+DA I +YI
Sbjct: 433 CFRGEGISRFAGSLEVQRSGGAGMILGNVPAVGRRPHADPHFVPATAVSYEDANIILKYI 492
Query: 487 KSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEAS 546
KS NPTA I T+ ++PAP MANF+SRGPN +DP+ LKPDITAPG++ILAAWSE
Sbjct: 493 KSRKNPTATIVPPVTIYGSRPAPAMANFSSRGPNPIDPHFLKPDITAPGVDILAAWSEQD 552
Query: 547 SPSKLA--FDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKN 604
SP+KL D RIV+Y ++SGTSMSCPHV+AAAALL+AIHP WS AAIRSALMTT+ N
Sbjct: 553 SPTKLPKYLDPRIVQYNLYSGTSMSCPHVSAAAALLRAIHPTWSQAAIRSALMTTSTTNN 612
Query: 605 NKALPITN---ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNP 661
PIT+ D S ATPFSFGSGHFRP+KAADPGLVYD++Y DYL YLC + +P
Sbjct: 613 KYGQPITDDSTLDNSPATPFSFGSGHFRPSKAADPGLVYDSNYTDYLHYLCGLKMNSIDP 672
Query: 662 VFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNV-GGSKSVYFFSAKPPMGVSVKAN 720
F+CP + +LNYPSIA+P L V +KRTVTNV GG K+VYFF ++ P GV+V A+
Sbjct: 673 SFKCPPRALHPHDLNYPSIAVPQLRNVVRIKRTVTNVGGGGKNVYFFKSEAPRGVAVSAS 732
Query: 721 PSILFFDHIGQKKSFTITV--RLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVS 775
P+IL+F+ +G++K FTIT+ ++ + + Y FGW+ W+DG+H VRSP+AVS
Sbjct: 733 PNILYFNRVGERKKFTITISRKVNNNNRSSKKGEDYSFGWFAWSDGIHYVRSPIAVS 789
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740593|emb|CBI30775.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/758 (62%), Positives = 552/758 (72%), Gaps = 55/758 (7%)
Query: 24 QVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPD 83
QVYIV+FG +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+P
Sbjct: 18 QVYIVYFG-EHSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLSPH 76
Query: 84 EAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLD-EVAKQNWNHFNMGQDLLSKARYG 142
E +LSE++EVVSV+PS +K++L TTRSWEFVGL+ E+ ++ ++LL KARYG
Sbjct: 77 EVTKLSEMDEVVSVFPSQRKKHTLHTTRSWEFVGLEKELGREQLKKQKKTRNLLEKARYG 136
Query: 143 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGF 202
+IVG+VDNGVWPESKSFSDEGMGP+PKSWKGICQTGVAFNSS CN+K+IGARYYLKG+
Sbjct: 137 DQIIVGMVDNGVWPESKSFSDEGMGPIPKSWKGICQTGVAFNSSHCNRKLIGARYYLKGY 196
Query: 203 EQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAI 262
E GPLN T D RSPRD DGHGTHTASTVAGRRV N SA G +A GTASGGAPLARLAI
Sbjct: 197 ESDNGPLNTTTDYRSPRDKDGHGTHTASTVAGRRVHNVSALG-YAPGTASGGAPLARLAI 255
Query: 263 YKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGAL 322
YK CW P +K GNTC+E D+
Sbjct: 256 YKVCWPIPGQTKVKGNTCYEEDI------------------------------------- 278
Query: 323 NAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 382
AGNSGPAPS+LSN APW+ITVGA S+DR FV P+VLG GM+++G++VT
Sbjct: 279 ------------AGNSGPAPSTLSNPAPWIITVGASSIDRAFVTPLVLGNGMKLMGQSVT 326
Query: 383 PYNLKK-MHPLVYAADVVVPGVHQNETN-QCLPGSLTPEKVKGKIVLCMRGS-GFKLSKG 439
PY LKK M+PLV+AAD VVPGV +N T C GSL P+KVKGKIVLC+RG ++ KG
Sbjct: 327 PYKLKKKMYPLVFAADAVVPGVPKNNTAANCNFGSLDPKKVKGKIVLCLRGGMTLRIEKG 386
Query: 440 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQA 499
+EVKRAGGVG ILGN+P NG + D H LPATAV +D KI YIKST P A I
Sbjct: 387 IEVKRAGGVGFILGNTPENGFDLPADPHLLPATAVSSEDVTKIRNYIKSTKKPMATIIPG 446
Query: 500 RTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVK 559
RTVLH +PAPFMA+F SRGPN +DP ILKPDIT PGLNILAAWSE SSP++ D R+VK
Sbjct: 447 RTVLHAKPAPFMASFISRGPNTIDPNILKPDITGPGLNILAAWSEGSSPTRSELDPRVVK 506
Query: 560 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 619
Y IFSGTSMSCPHVAAA ALLKAIHP+WSSAAIRSALMTTA + NN PIT++ G+
Sbjct: 507 YNIFSGTSMSCPHVAAAVALLKAIHPNWSSAAIRSALMTTAGLVNNIGKPITDSSGNPTN 566
Query: 620 PFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPS 679
PF +GSGHFRPTKAADPGLVYD +Y DYLLYLC+ G + F+CP PS+ NLNYPS
Sbjct: 567 PFQYGSGHFRPTKAADPGLVYDTTYTDYLLYLCNIGVKSLDSSFKCPKVSPSSNNLNYPS 626
Query: 680 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 739
+ I L V V RT TNVG ++S+YF S K P+G SV+ PSIL+F+H+GQKKSF ITV
Sbjct: 627 LQISKLKRKVTVTRTATNVGSARSIYFSSVKSPVGFSVRVEPSILYFNHVGQKKSFDITV 686
Query: 740 RLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 777
+ + +Y FGWY W DG+H VRSPMAVS A
Sbjct: 687 EARNPKASKKNDTEYAFGWYTWNDGIHNVRSPMAVSLA 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 777 | ||||||
| TAIR|locus:2171938 | 791 | AT5G45650 "AT5G45650" [Arabido | 0.978 | 0.960 | 0.632 | 6.7e-262 | |
| TAIR|locus:2172018 | 754 | AT5G45640 "AT5G45640" [Arabido | 0.890 | 0.917 | 0.564 | 7.7e-206 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.945 | 0.919 | 0.452 | 7.6e-167 | |
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.940 | 0.946 | 0.444 | 2e-166 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.799 | 0.820 | 0.477 | 2.2e-153 | |
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.800 | 0.799 | 0.472 | 1.8e-149 | |
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.927 | 0.937 | 0.427 | 6.2e-149 | |
| UNIPROTKB|Q8H4X8 | 762 | OJ1136_A10.113 "Putative subti | 0.930 | 0.948 | 0.414 | 5.5e-148 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.687 | 0.698 | 0.480 | 4.2e-145 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.938 | 0.940 | 0.414 | 4.2e-143 |
| TAIR|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2520 (892.1 bits), Expect = 6.7e-262, P = 6.7e-262
Identities = 490/775 (63%), Positives = 584/775 (75%)
Query: 17 SSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGF 76
+S ++KQVYIV+FG G+KA HEI+E HHSYL SVK++EE+ARAS LYSYKHSINGF
Sbjct: 18 ASCAEEKQVYIVYFG-EHKGDKAFHEIEEHHHSYLQSVKESEEDARASLLYSYKHSINGF 76
Query: 77 SAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVA-------KQNW--N 127
+A LTPD+A++L +L EVVSV+ SHP KY TTRSWEFVGL+E ++N +
Sbjct: 77 AAELTPDQASKLEKLAEVVSVFKSHPRKYEAHTTRSWEFVGLEEEETDSDVPRRKNDADD 136
Query: 128 HFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSL 187
F +G++ L KA++G +IVG++D+GVWPESKSF+D+GMGPVPKSWKGICQTGVAFNSS
Sbjct: 137 RFRVGRNFLKKAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSH 196
Query: 188 CNKKIIGARYYLKGFEQLYGPLNAT--EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 245
CN+KIIGARYY+KG+E+ YG NAT +D SPRD DGHG+HTAST GRRV ASA GG
Sbjct: 197 CNRKIIGARYYVKGYERYYGAFNATANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGG 256
Query: 246 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 305
FA+G+ASGGAPLARLAIYKACWA P A K GN C E DMLAAIDDAI DGVHV+SISIG
Sbjct: 257 FAKGSASGGAPLARLAIYKACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIG 316
Query: 306 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 365
T +PF F +DGIA+GAL+AVK NI+VA SAGNSGP P +LSNLAPW+ITVGA +LDR FV
Sbjct: 317 TTEPFPFTQDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFV 376
Query: 366 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKI 425
G +VLG G I ++T + + K PLVYA++VVVPG+ NET+QCLP SL PE V GK+
Sbjct: 377 GGLVLGNGYTIKTDSITAFKMDKFAPLVYASNVVVPGIALNETSQCLPNSLKPELVSGKV 436
Query: 426 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEY 485
VLC+RG+G ++ KGMEVKRAGG G+ILGN ANGNE D+H++P V KI EY
Sbjct: 437 VLCLRGAGSRIGKGMEVKRAGGAGMILGNIAANGNEVPSDSHFVPTAGVTPTVVDKILEY 496
Query: 486 IKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEA 545
IK+ NP A IK +TV Q AP M F+SRGPN +DP ILKPDITAPGL ILAAWS A
Sbjct: 497 IKTDKNPKAFIKPGKTVYKYQAAPSMTGFSSRGPNVVDPNILKPDITAPGLYILAAWSGA 556
Query: 546 SSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNN 605
SPSK++ D+R+ Y I+SGTSMSCPHV IHP WSSAAIRSALMTTAWM N+
Sbjct: 557 DSPSKMSVDQRVAGYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTTAWMTND 616
Query: 606 KALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRC 665
K PI + G A PF+ GSGHFRPTKAADPGLVYDASY YLLY CS + +P F+C
Sbjct: 617 KKKPIQDTTGLPANPFALGSGHFRPTKAADPGLVYDASYRAYLLYGCSVNITNIDPTFKC 676
Query: 666 PNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVG--GSKSVYFFSAKPPMGVSVKANPSI 723
P+K P N NYPSIA+PNL TV VKRTVTNVG S S Y FS KPP G+SVKA P+I
Sbjct: 677 PSKIPPGYNHNYPSIAVPNLKKTVTVKRTVTNVGTGNSTSTYLFSVKPPSGISVKAIPNI 736
Query: 724 LFFDHIGQKKSFTITVR-LGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 777
L F+ IGQK+ F I ++ L ++ QY FGW+ WTD +H+VRSP+AVS A
Sbjct: 737 LSFNRIGQKQRFKIVIKPLKNQVMNATEKGQYQFGWFSWTDKVHVVRSPIAVSLA 791
|
|
| TAIR|locus:2172018 AT5G45640 "AT5G45640" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1991 (705.9 bits), Expect = 7.7e-206, P = 7.7e-206
Identities = 411/728 (56%), Positives = 505/728 (69%)
Query: 72 SINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWN---- 127
SINGF+A LTPD+A+RL EL+EVVSV+ S P KY + TTRSWEFVGL E +++
Sbjct: 37 SINGFAAELTPDQASRLKELKEVVSVFKSDPRKYKIHTTRSWEFVGLKEEEGEDYRSDGD 96
Query: 128 ---H-------FNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGIC 177
H F +G+ L A++G VIVGL+D+GVWPES+SF D+GMGP+P+SWKGIC
Sbjct: 97 APRHKYDVNDRFRVGRKFLKNAKHGDGVIVGLIDSGVWPESRSFDDKGMGPIPESWKGIC 156
Query: 178 QTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA--TEDDRSPRDMDGHGTHTASTVAGR 235
QTGVAFNSS CN RYY +G+E+ YGP NA +D SPRD DGHG+HTAST GR
Sbjct: 157 QTGVAFNSSHCN------RYYARGYERYYGPFNAEANKDFLSPRDADGHGSHTASTAVGR 210
Query: 236 RVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 295
RV SA GG A GTASGGA LARLA+YKACWA P K A NTCF+ DMLAA DDAI D
Sbjct: 211 RVDGVSALGGIAMGTASGGASLARLAVYKACWAVPNKEKYATNTCFDEDMLAAFDDAIAD 270
Query: 296 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITV 355
GV+V+SISIGT +P + DGIAIGAL+AVK +I+VA SAGN GPA +LSN APW+ITV
Sbjct: 271 GVNVISISIGTVEPHTYLEDGIAIGALHAVKRDIVVAASAGNDGPARETLSNPAPWIITV 330
Query: 356 GAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGS 415
GA SLDR FVG + LG G ++T + PLVYA DVVVPGV +N+ CLP +
Sbjct: 331 GASSLDRFFVGRLELGDGYVFESDSLTTLKMDNYAPLVYAPDVVVPGVSRNDAMLCLPNA 390
Query: 416 LTPEKVKGKIVLCMRG--SGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATA 473
L+P+ V+GK+VLC+RG SG + KG+EVKRAGGVG+IL NS N + + ++H++P TA
Sbjct: 391 LSPDHVRGKVVLCLRGYGSGSTIGKGLEVKRAGGVGMILANSRDN-DAFDVESHFVP-TA 448
Query: 474 VLYDDAI-KIHEYIKSTNNPTAIIKQARTVLH-TQPAPFMANFTSRGPNALDPYILKPDI 531
+++ + +I +YI +T P A IK A TVL+ QP + + P + ++ PDI
Sbjct: 449 LVFSSTVDRILDYIYNTYEPVAFIKPAETVLYRNQPEDSVYPYKP-AP-FMTSFL--PDI 504
Query: 532 TAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAA 591
APGLNILAAWS A S SK + D+R++ Y + SGTSMSCPHV +HP WSSAA
Sbjct: 505 IAPGLNILAAWSGADSASKDSIDRRVLDYNLDSGTSMSCPHVAGAIALLKSMHPTWSSAA 564
Query: 592 IRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYL 651
IRSALMTTA M N PI + DGS A PF+ GS HFRPTKAA PGLVYDASY+ YLLY
Sbjct: 565 IRSALMTTASMTNEDNEPIQDYDGSPANPFALGSRHFRPTKAASPGLVYDASYQSYLLYC 624
Query: 652 CSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVG---GSKSVYFFS 708
CS G + +P F+CP++ P NLNYPSI+IP L+GTV V RTVT VG S SVY F+
Sbjct: 625 CSVGLTNLDPTFKCPSRIPPGYNLNYPSISIPYLSGTVTVTRTVTCVGRTGNSTSVYVFN 684
Query: 709 AKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS-ETTRQGLTKQYVFGWYRWTDGLHL 767
A+PP GV VKA P++L FD IGQKK F I E T + +Y FGW+ WTDG H+
Sbjct: 685 AQPPNGVLVKAEPNVLVFDKIGQKKRFNIIFTTQRYEFTGEARRDRYRFGWFSWTDGHHV 744
Query: 768 VRSPMAVS 775
VRS +AVS
Sbjct: 745 VRSSIAVS 752
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1623 (576.4 bits), Expect = 7.6e-167, P = 7.6e-167
Identities = 356/786 (45%), Positives = 474/786 (60%)
Query: 16 ASSAQKQKQVYIVHFGGSDNGEK------------AL-HEIQETHHSYLLSVKDNEEEAR 62
A++ +KQ Y+V+ G +GE+ AL + +++H L V ++E+AR
Sbjct: 30 AAAGGGEKQSYVVYLGEHAHGERLGAAAAADVDVEALARQAEDSHCELLAGVLGDKEKAR 89
Query: 63 ASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVA 122
+ YSY INGF+A L AA+++E VVSV+P+ K L TTRSW+F+GL V
Sbjct: 90 EAIFYSYTRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHK--LHTTRSWQFLGLAGVG 147
Query: 123 KQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVA 182
G KAR+G+D I+G +D GVWPES+SF D+G+GP+P W+G CQ G
Sbjct: 148 GAP-----TGA-AWKKARFGEDTIIGNLDTGVWPESESFRDDGLGPIPSWWRGECQKGQD 201
Query: 183 FNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASA 242
++ CN+K+IGAR++ KG+ G LN + D +PRD DGHGTHT ST G V AS
Sbjct: 202 -DAFSCNRKLIGARFFNKGYASAVGNLNTSLFD-TPRDTDGHGTHTLSTAGGAPVAGASV 259
Query: 243 FGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSI 302
FG + GTASGG+P+AR+A Y+ C+ TP G+ CF+AD+LAA D AI DGVHVLS+
Sbjct: 260 FG-YGNGTASGGSPMARVAAYRVCY-TP----VNGSECFDADILAAFDAAIHDGVHVLSV 313
Query: 303 SIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDR 362
S+G + F DG+AIG+ +AV+H I V CSAGNSGPAP ++SN+APWL T A ++DR
Sbjct: 314 SLGGDAGDYF-ADGLAIGSFHAVRHGIAVVCSAGNSGPAPGTVSNVAPWLFTAAASTMDR 372
Query: 363 DFVGPVVLGT----GMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTP 418
+F VV G + ++P + P++ ++ P QNE+ C GSL P
Sbjct: 373 EFPAYVVFNDTKLKGQSLSASALSPAS--SSFPMIDSSLAASPNRTQNESQLCFLGSLDP 430
Query: 419 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDD 478
EKVKGKIV+C+RG ++ KG V AGG G++L N GNE DAH LPAT + + D
Sbjct: 431 EKVKGKIVVCLRGVNPRVEKGEAVLEAGGAGMVLANDVTTGNEIIADAHVLPATHIKFSD 490
Query: 479 AIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 538
+ Y+K+T +P I + T L T+PAPFMA F+S+GPN + P ILKPDITAPG+++
Sbjct: 491 GQILFSYLKNTKSPAGTITRPETRLGTKPAPFMAAFSSQGPNTVTPGILKPDITAPGVSV 550
Query: 539 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMT 598
+AAW+ AS+P+ LAFDKR V + SGTSMSCPHV + PDWS AAIRSALMT
Sbjct: 551 VAAWTRASAPTDLAFDKRRVAFNSESGTSMSCPHVAGVVGLLRTLRPDWSPAAIRSALMT 610
Query: 599 TAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSF 658
TA +N+ I N+ + A PF FG+GH P +A +PGLVYD + DYL +LCS ++
Sbjct: 611 TAVEVDNERHAILNSSFAAANPFGFGAGHVSPARAMNPGLVYDLAAVDYLNFLCSLSYNA 670
Query: 659 TNPV----------FRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFS 708
T FRCP PP +LNYPSI + NL + V+RTV NVG VY
Sbjct: 671 TVMAMFAGGGGAAPFRCPASPPKVQDLNYPSITVVNLTSSATVRRTVKNVG-KPGVYKAY 729
Query: 709 AKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLV 768
P GV V +P L F G+KK+F VR E T L Y FG WT+G V
Sbjct: 730 VTSPAGVRVTVSPDTLPFLLKGEKKTFQ--VRF--EVTNASLAMDYSFGALVWTNGKQFV 785
Query: 769 RSPMAV 774
RSP+ V
Sbjct: 786 RSPLVV 791
|
|
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1619 (575.0 bits), Expect = 2.0e-166, P = 2.0e-166
Identities = 343/771 (44%), Positives = 469/771 (60%)
Query: 19 AQKQKQVYIVHFGGSDN-GE---KALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSIN 74
A K Y+V+FG + GE A+ ++ETH+ +L S + E A + YSY IN
Sbjct: 25 ASKDSSSYVVYFGAHSHVGEITEDAMDRVKETHYDFLGSFTGSRERATDAIFYSYTKHIN 84
Query: 75 GFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQD 134
GF+A L D A +S+ EVVSV+P+ K L TTRSW+F+GL+ N +
Sbjct: 85 GFAAHLDHDLAYEISKHPEVVSVFPNKALK--LHTTRSWDFLGLEH------NSYVPSSS 136
Query: 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQT--GVAFNSSLCNKKI 192
+ KAR+G+D I+ +D GVWPESKSF DEG+GP+P WKGICQ F+ CN+K+
Sbjct: 137 IWRKARFGEDTIIANLDTGVWPESKSFRDEGLGPIPSRWKGICQNQKDATFH---CNRKL 193
Query: 193 IGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTAS 252
IGARY+ KG+ G LN++ D SPRD+DGHG+HT ST AG VP S FG GTA
Sbjct: 194 IGARYFNKGYAAAVGHLNSSFD--SPRDLDGHGSHTLSTAAGDFVPGVSIFGQ-GNGTAK 250
Query: 253 GGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAF 312
GG+P AR+A YK CW K GN C++AD+LAA D AI DG V+S+S+G +P +F
Sbjct: 251 GGSPRARVAAYKVCWPPVK-----GNECYDADVLAAFDAAIHDGADVISVSLG-GEPTSF 304
Query: 313 NRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGT 372
D +AIG+ +A K I+V CSAGNSGPA S++SN+APW ITVGA ++DR+F +VLG
Sbjct: 305 FNDSVAIGSFHAAKKRIVVVCSAGNSGPADSTVSNVAPWQITVGASTMDREFASNLVLGN 364
Query: 373 GMEIIGKTVTPYNLK--KMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMR 430
G G++++ L K +P++ + + + C GSL P K KGKI++C+R
Sbjct: 365 GKHYKGQSLSSTALPHAKFYPIMASVNAKAKNASALDAQLCKLGSLDPIKTKGKILVCLR 424
Query: 431 GSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTN 490
G ++ KG V GG+G++L N+ GN+ D H LPAT + D+ + YI T
Sbjct: 425 GQNGRVEKGRAVALGGGIGMVLENTYVTGNDLLADPHVLPATQLTSKDSFAVSRYISQTK 484
Query: 491 NPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSK 550
P A I +RT L +PAP MA+F+S+GP+ + P ILKPDITAPG++++AA++ A SP+
Sbjct: 485 KPIAHITPSRTDLGLKPAPVMASFSSKGPSIVAPQILKPDITAPGVSVIAAYTGAVSPTN 544
Query: 551 LAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPI 610
FD R + + SGTSMSCPH+ +P WS AAIRSA+MTTA + ++ PI
Sbjct: 545 EQFDPRRLLFNAISGTSMSCPHISGIAGLLKTRYPSWSPAAIRSAIMTTATIMDDIPGPI 604
Query: 611 TNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFS------FTNPVFR 664
NA ATPFSFG+GH +P A +PGLVYD +DYL +LCS G++ F+ F
Sbjct: 605 QNATNMKATPFSFGAGHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGNNFT 664
Query: 665 CPNKPPSALNLNYPSIAIPNLNGT-VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSI 723
C + S +NLNYPSI +PNL + V V RTV NVG S+Y P GV V P+
Sbjct: 665 CSSPKISLVNLNYPSITVPNLTSSKVTVSRTVKNVG-RPSMYTVKVNNPQGVYVAVKPTS 723
Query: 724 LFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAV 774
L F +G++K+F + + ++ + K YVFG W+D H VRSP+ V
Sbjct: 724 LNFTKVGEQKTFKVIL----VKSKGNVAKGYVFGELVWSDKKHRVRSPIVV 770
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
Identities = 314/657 (47%), Positives = 417/657 (63%)
Query: 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKII 193
DL +A DV+VG++D GVWPESKS+SDEG GP+P SWKG C+ G F +SLCN+K+I
Sbjct: 122 DLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLI 181
Query: 194 GARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASG 253
GAR++ +G+E GP++ +++ RSPRD DGHGTHT+ST AG V AS G +A GTA G
Sbjct: 182 GARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLG-YASGTARG 240
Query: 254 GAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFN 313
AP AR+A+YK CW G CF +D+LAAID AI D V+VLS+S+G +
Sbjct: 241 MAPRARVAVYKVCWL--------GG-CFSSDILAAIDKAIADNVNVLSMSLGGGMS-DYY 290
Query: 314 RDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373
RDG+AIGA A++ ILV+CSAGN+GP+ SSLSN+APW+ TVGAG+LDRDF +LG G
Sbjct: 291 RDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNG 350
Query: 374 MEIIGKTVTPYNL--KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRG 431
G ++ K+ P +YA + + N C+ G+L PEKVKGKIV+C RG
Sbjct: 351 KNFTGVSLFKGEALPDKLLPFIYAGNAS----NATNGNLCMTGTLIPEKVKGKIVMCDRG 406
Query: 432 SGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNN 491
++ KG VK AGGVG+IL N+ ANG E DAH LPAT V I Y+ + N
Sbjct: 407 INARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPN 466
Query: 492 PTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKL 551
PTA I TV+ +P+P +A F+SRGPN++ P ILKPD+ APG+NILAAW+ A+ P+ L
Sbjct: 467 PTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGL 526
Query: 552 AFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPIT 611
A D R V++ I SGTSMSCPHV +HP+WS AAIRSALMTTA+ P+
Sbjct: 527 ASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLL 586
Query: 612 N-ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFR------ 664
+ A G +TPF G+GH PT A +PGL+YD + EDYL +LC+ ++T+P R
Sbjct: 587 DIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCA--LNYTSPQIRSVSRRN 644
Query: 665 --C-PNKPPSALNLNYPSIAIPNLNGTVIVK--RTVTNVGGSKSVYFFSAKPPMGVSVKA 719
C P+K S +LNYPS A+ N++G K RTVT+VGG+ + GV +
Sbjct: 645 YTCDPSKSYSVADLNYPSFAV-NVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISV 703
Query: 720 NPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSF 776
P++L F +KKS+T+T + S G FG W+DG H+V SP+A+S+
Sbjct: 704 EPAVLNFKEANEKKSYTVTFTVDSSKP-SGSNS---FGSIEWSDGKHVVGSPVAISW 756
|
|
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1459 (518.7 bits), Expect = 1.8e-149, P = 1.8e-149
Identities = 308/652 (47%), Positives = 407/652 (62%)
Query: 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIG 194
L +KA YG+D I+ +D GVWPESKSFSDEG G VP WKG C V CN+K+IG
Sbjct: 147 LWNKAGYGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCHKDVP-----CNRKLIG 201
Query: 195 ARYYLKGFEQLYG-PLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASG 253
ARY+ KG+ G P NA+ + + RD DGHG+HT ST AG VP A+ FG GTASG
Sbjct: 202 ARYFNKGYLAYTGLPSNASYE--TCRDHDGHGSHTLSTAAGNFVPGANVFG-IGNGTASG 258
Query: 254 GAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFN 313
G+P AR+A YK CW P G CF+AD+LAAI+ AI DGV VLS S+G + +
Sbjct: 259 GSPKARVAAYKVCW--PPVD---GAECFDADILAAIEAAIEDGVDVLSASVGGDAG-DYM 312
Query: 314 RDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373
DGIAIG+ +AVK+ + V CSAGNSGP ++SN+APW+ITVGA S+DR+F V L G
Sbjct: 313 SDGIAIGSFHAVKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNG 372
Query: 374 MEIIGKTVT-PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 432
G +++ P +KM+ L+ AAD V + + C GSL P+KVKGKI++C+RG
Sbjct: 373 QSFKGTSLSKPLPEEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLRGD 432
Query: 433 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNP 492
++ KGM+ AG G++L N A+GNE DAH LPA+ + Y D + Y+ ST +P
Sbjct: 433 NARVDKGMQAAAAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSSTKDP 492
Query: 493 TAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLA 552
IK L+T+PAPFMA+F+SRGPN + P ILKPDITAPG+NI+AA++EA+ P+ L
Sbjct: 493 KGYIKAPTATLNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTDLD 552
Query: 553 FDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPITN 612
D R + SGTSMSCPH+ +HP WS AAIRSA+MTT+ +NN+ P+ +
Sbjct: 553 SDNRRTPFNTESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRKPMVD 612
Query: 613 ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFT-------NPVFRC 665
A PFS+GSGH +P KAA PGLVYD + DYL +LC+ G++ T +P + C
Sbjct: 613 ESFKKANPFSYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAEDPQYTC 672
Query: 666 PNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILF 725
+ + L+ NYPSI +PNL G++ V R + NVG + Y + P+GV V P L
Sbjct: 673 -RQGANLLDFNYPSITVPNLTGSITVTRKLKNVG-PPATYNARFREPLGVRVSVEPKQLT 730
Query: 726 FDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 777
F+ G+ K F +T+R T G YVFG WTD H VRSP+ V +
Sbjct: 731 FNKTGEVKIFQMTLR-PLPVTPSG----YVFGELTWTDSHHYVRSPIVVQLS 777
|
|
| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
Identities = 331/774 (42%), Positives = 451/774 (58%)
Query: 19 AQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSA 78
+ + VYIV+ G +G + +QE HH L +V +E+ A + LYSY+H +GF+A
Sbjct: 20 SSSRSNVYIVYMGERHHGLRP-ELVQEAHHGMLAAVLGSEQAAMDAILYSYRHGFSGFAA 78
Query: 79 VLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSK 138
VLT +AARLS+ VV V + L TTRSW+F+G+ N G +L +
Sbjct: 79 VLTGGQAARLSDWPGVVRVVRNRV--LDLHTTRSWDFMGV--------NPSPSGGGILLE 128
Query: 139 ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYY 198
+R+G+D I+G++D G+WPES SF D+G+G VP+ WKG C G FN+S CN+KIIGA++Y
Sbjct: 129 SRFGEDSIIGVLDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWY 188
Query: 199 LKGFEQLYGPLNATE--DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAP 256
+KG+E YG +N ++ + S RD GHGTHTAST AG V NAS F G A+G A GGA
Sbjct: 189 VKGYEAEYGKMNTSDIYEFMSARDAVGHGTHTASTAAGALVANAS-FRGLAKGVARGGAQ 247
Query: 257 LARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPF-AFNRD 315
ARLA+YK CWAT G+ C AD+LAA DDAI DGV V+S+S+G P A+ D
Sbjct: 248 RARLAVYKVCWAT-------GD-CTAADILAAFDDAIHDGVDVISVSLGQAPPLPAYVDD 299
Query: 316 GIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGME 375
++IG+ +AV ++V CSAGNSGP ++ N APW++TV AG++DR F+ ++LG
Sbjct: 300 VLSIGSFHAVAKGVVVVCSAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNST 359
Query: 376 IIGKTVTPYNLKKMHP-----LVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMR 430
+G+T+ Y+ K HP +VYA D+ + C GSL VKG +VLC +
Sbjct: 360 YVGQTL--YSGK--HPSKSVRIVYAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQ 415
Query: 431 GSGFK-LSKGME-VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKS 488
+ S +E VK+A GVG+I S D +P V Y I Y S
Sbjct: 416 TRAQRSASVAVETVKKARGVGVIFAQFLTKDIASSLD---IPCVQVDYQVGTAILAYTTS 472
Query: 489 TNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSP 548
NP A +T++ AP +A F+SRGP++L P ILKPDI APG+NILAAWS A++
Sbjct: 473 MRNPVAQFSFPKTIVGELVAPEVAYFSSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAI 532
Query: 549 SKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKAL 608
S A V + I SGTSMSCPH+ +HP+WS AA++SAL+TTA + +
Sbjct: 533 SS-AIGS--VNFKIDSGTSMSCPHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGF 589
Query: 609 PITN--ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGF------SFTN 660
+ + A + A PF +G GH P +AA PGLVYD DY+ +LCS G+ S T
Sbjct: 590 EMVSEAAPYNDANPFDYGGGHVNPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQ 649
Query: 661 PVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKAN 720
C + P S LNLN PSI IP L G + V RTVTNVG + S Y + P GV V +
Sbjct: 650 QQTTCQHTPKSQLNLNVPSITIPELRGKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVS 709
Query: 721 PSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAV 774
PS+L F+ +K F +T + ++ +G +Y FG W DG H VR P+ V
Sbjct: 710 PSLLTFNSTVRKLPFKVTFQ--AKLKVKG---RYTFGSLTWEDGTHTVRIPLVV 758
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| UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
Identities = 318/768 (41%), Positives = 457/768 (59%)
Query: 26 YIVHFGGSDNGEKALHE----IQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
YIV+ G G A E ++HH L SV +++ A+ + LYSY +INGF+A L
Sbjct: 19 YIVYLGSHPYGPDASAEEHARATQSHHDLLGSVLGSKQLAKDAILYSYTKNINGFAAHLE 78
Query: 82 PDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARY 141
+ A +++ +VV+V S K L TTRSW+F+ ++ + + + R+
Sbjct: 79 EEVATQIARHPDVVTVMASTMLK--LHTTRSWDFMDMERDGQI------LPDSIWKHGRF 130
Query: 142 GQDVIVGLVDNGVWPESKSFSDEGM-GPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 200
GQDVI+ +D+GVWPES SF+DE + G VPK WKG C + S CNKK+IGARY+ K
Sbjct: 131 GQDVIIANLDSGVWPESNSFTDEEVVGEVPKRWKGSCSDTAKYGVS-CNKKLIGARYFNK 189
Query: 201 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 260
+ L A + + S RD +GHGTHT ST GR VP AS FG +A GTA GGAP AR+
Sbjct: 190 --DMLLSNPGAVDGNWS-RDTEGHGTHTLSTAGGRFVPRASLFG-YANGTAKGGAPRARV 245
Query: 261 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFA----FNRDG 316
A YK CW+ G C AD+LA + AI DG V+S+S G + P A F ++
Sbjct: 246 AAYKVCWS--------GE-CAAADVLAGFEAAIHDGADVISVSFGQDAPVATVASFLQEP 296
Query: 317 IAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI 376
+ +G+L+A + + V CSAGNSGP ++ N APW+ TV A ++DRDF V LG +
Sbjct: 297 VTLGSLHAAMNGVSVVCSAGNSGPLEDTVVNAAPWVTTVAASTVDRDFPNVVTLGNNAHM 356
Query: 377 IGKTV--TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 434
G ++ T + +++ ++ A+D + + C PG+L PEKVK KIV+C+RG
Sbjct: 357 TGMSLETTTLHSTQLYSMIKASDAALASSDPAVASTCPPGTLDPEKVKNKIVVCVRGGDI 416
Query: 435 -KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPT 493
+++KGM V AGG G+IL N +G++ D H LPAT + Y +A+ +++Y+ S+ NP
Sbjct: 417 PRVTKGMTVLNAGGTGMILANGEMDGDDIVADPHVLPATMITYSEAMSLYKYMDSSKNPV 476
Query: 494 AIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAF 553
A I ++T + + +P +A F+SRGP+ P +LKPDI APG++ILAA++E SP+++
Sbjct: 477 ANISPSKTEVGVKNSPSVAAFSSRGPSGTLPCVLKPDIAAPGVDILAAFTEYVSPTEVPN 536
Query: 554 DKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPITNA 613
D+R +Y I SGTSM+CPH+ P+WS AA+RSA+MTTA ++N P+ +
Sbjct: 537 DERRSEYAILSGTSMACPHISGVIGLLKAARPEWSPAAMRSAIMTTARTQDNTGAPMRDH 596
Query: 614 DGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPV------FRCPN 667
DG AT F+FG+G+ P +A DPGLVYD S EDY ++LCS GF+ ++ F CP
Sbjct: 597 DGREATAFAFGAGNIHPNRAVDPGLVYDLSKEDYFVFLCSMGFNSSDLAKLSAGNFTCPE 656
Query: 668 KPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFD 727
K P +LNYPSI +P L T V R + VG + Y + + P GV++ P+ L F
Sbjct: 657 KVPPMEDLNYPSIVVPALRHTSTVARRLKCVG-RPATYRATWRAPYGVNMTVEPAALEFG 715
Query: 728 HIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVS 775
G+ K F +T + SE + G K YVFG W+DG H VRSP+ V+
Sbjct: 716 KDGEVKEFKVTFK--SEKDKLG--KGYVFGRLVWSDGTHHVRSPVVVN 759
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| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1299 (462.3 bits), Expect = 4.2e-145, Sum P(2) = 4.2e-145
Identities = 273/568 (48%), Positives = 355/568 (62%)
Query: 132 GQD-LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNK 190
G D L ++ DV+VG++D GVWPES+S+ D G+G VP WKG C G FNSS CN+
Sbjct: 113 GNDGLFPQSGTAGDVVVGVLDTGVWPESRSYDDAGLGEVPSWWKGECMAGTGFNSSACNR 172
Query: 191 KIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT 250
K++GAR++ +G+E GP++ T + RSPRD DGHGTHT+ST AG V AS G FA GT
Sbjct: 173 KLVGARFFNRGYEAAMGPMDTTRESRSPRDDDGHGTHTSSTAAGAAVSGASLLG-FASGT 231
Query: 251 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPF 310
A G AP AR+A+YK CW G CF +D+LA +D A+ DG VLS+S+G
Sbjct: 232 ARGMAPRARVAVYKVCWL--------GG-CFSSDILAGMDAAVADGCGVLSLSLGGGAA- 281
Query: 311 AFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVL 370
+ RD +AIGA A++ N+LV+CSAGN+GP S+LSN+APW+ TVGAG+LDRDF V L
Sbjct: 282 DYARDSVAIGAFAAMEQNVLVSCSAGNAGPGTSTLSNVAPWITTVGAGTLDRDFPAYVSL 341
Query: 371 GTGMEIIGKTVTPYNLKKMH----PLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIV 426
G G G V+ Y K + P+VYAA+ + N C+PG+LTPEKV GKIV
Sbjct: 342 GNGKNYTG--VSLYAGKALPSTPLPIVYAANAS----NSTAGNLCMPGTLTPEKVAGKIV 395
Query: 427 LCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYI 486
+C RG ++ KG V+ AGG G++L N+ NG E DAH LPA V + I Y+
Sbjct: 396 VCDRGVSARVQKGFVVRDAGGAGMVLSNTATNGEELVADAHLLPAAGVGAKEGAAIKAYV 455
Query: 487 KSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEAS 546
S +PTA I A T + +P+P +A F+SRGPN L P ILKPDI APG+NILAAW+ +
Sbjct: 456 ASDPSPTATIVVAGTQVDVRPSPVVAAFSSRGPNMLTPEILKPDIIAPGVNILAAWTGKA 515
Query: 547 SPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKN-- 604
P+ +A D R V + I SGTSMSCPHV HP+WS AA+RSALMTTA+
Sbjct: 516 GPTGIAADTRRVAFNIISGTSMSCPHVSGLAALLRSAHPEWSPAAVRSALMTTAYSTYAG 575
Query: 605 -NKALPITNA-DGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFT--- 659
A P+ +A G+ ATPF +G+GH P A DPGLVYD DY+ +LC+ ++ T
Sbjct: 576 AGDANPLLDAATGAPATPFDYGAGHVDPASAVDPGLVYDLGTADYVDFLCALNYTSTMIA 635
Query: 660 ----NPVFRCPN-KPPSALNLNYPSIAI 682
+ + C K S NLNYPS A+
Sbjct: 636 AVARSKSYGCTEGKAYSVYNLNYPSFAV 663
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| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
Identities = 325/784 (41%), Positives = 442/784 (56%)
Query: 16 ASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSING 75
+S++ YIVH D+ K I TH + S + + S +++Y +G
Sbjct: 18 SSASSSNSLTYIVHV---DHEAKP--SIFPTHFHWYTSSLASLTSSPPSIIHTYDTVFHG 72
Query: 76 FSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDL 135
FSA LT +A++L + V+SV P L TTRS EF+GL K L
Sbjct: 73 FSARLTSQDASQLLDHPHVISVIPEQVRH--LHTTRSPEFLGLRSTDKAG---------L 121
Query: 136 LSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGA 195
L ++ +G D+++G++D GVWPE SF D G+GPVP WKG C F S CN+K++GA
Sbjct: 122 LEESDFGSDLVIGVIDTGVWPERPSFDDRGLGPVPIKWKGQCIASQDFPESACNRKLVGA 181
Query: 196 RYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGA 255
R++ G+E G +N T + RSPRD DGHGTHTAS AGR V AS G +A G A+G A
Sbjct: 182 RFFCGGYEATNGKMNETTEFRSPRDSDGHGTHTASISAGRYVFPASTLG-YAHGVAAGMA 240
Query: 256 PLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRD 315
P ARLA YK CW + C+++D+LAA D A+ DGV V+S+S+G + D
Sbjct: 241 PKARLAAYKVCW---------NSGCYDSDILAAFDTAVADGVDVISLSVG-GVVVPYYLD 290
Query: 316 GIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGME 375
IAIGA A+ I V+ SAGN GP +++N+APW+ TVGAG++DRDF V LG G
Sbjct: 291 AIAIGAFGAIDRGIFVSASAGNGGPGALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKM 350
Query: 376 IIGKTVT--P-YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 432
I G +V P + +M+PLVY ++ G ++ CL GSL P VKGKIVLC RG
Sbjct: 351 ISGVSVYGGPGLDPGRMYPLVYGGSLL--GGDGYSSSLCLEGSLDPNLVKGKIVLCDRGI 408
Query: 433 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYI------ 486
+ +KG V++ GG+G+I+ N +G D H LPAT+V +I YI
Sbjct: 409 NSRATKGEIVRKNGGLGMIIANGVFDGEGLVADCHVLPATSVGASGGDEIRRYISESSKS 468
Query: 487 KSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEAS 546
+S+ +PTA I T L +PAP +A+F++RGPN P ILKPD+ APGLNILAAW +
Sbjct: 469 RSSKHPTATIVFKGTRLGIRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDRI 528
Query: 547 SPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNK 606
PS + D R ++ I SGTSM+CPHV HPDWS AAIRSAL+TTA+ +N
Sbjct: 529 GPSGVTSDNRRTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALITTAYTVDNS 588
Query: 607 ALPITN-ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTN--PVF 663
P+ + + G+ ++ +GSGH PTKA DPGLVYD + DY+ +LC+ ++ TN +
Sbjct: 589 GEPMMDESTGNTSSVMDYGSGHVHPTKAMDPGLVYDITSYDYINFLCNSNYTRTNIVTIT 648
Query: 664 R----CPN--KPPSALNLNYPSIAI------PNLNGTVIVKRTVTNVGGSKSVYFFSAKP 711
R C + NLNYPS ++ + T + RTVTNVG S SVY +P
Sbjct: 649 RRQADCDGARRAGHVGNLNYPSFSVVFQQYGESKMSTHFI-RTVTNVGDSDSVYEIKIRP 707
Query: 712 PMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSP 771
P G +V P L F +GQK SF + V+ G T G W+DG V SP
Sbjct: 708 PRGTTVTVEPEKLSFRRVGQKLSFVVRVKTTEVKLSPGATNVET-GHIVWSDGKRNVTSP 766
Query: 772 MAVS 775
+ V+
Sbjct: 767 LVVT 770
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_XI000523 | hypothetical protein (775 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 777 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-111 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 3e-35 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 7e-33 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-28 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 4e-21 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-17 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 4e-16 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 5e-16 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-14 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 8e-14 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-13 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-12 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 8e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 4e-11 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 4e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-10 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-10 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 5e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-09 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-09 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-09 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 6e-09 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 8e-09 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 5e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 7e-07 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 8e-07 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-06 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 1e-06 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 3e-06 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 7e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-05 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 1e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-05 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 4e-05 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 5e-05 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 7e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 7e-05 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 8e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 9e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 1e-04 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 3e-04 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 4e-04 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 6e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 7e-04 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.001 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 0.001 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 0.001 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 341 bits (877), Expect = e-111
Identities = 134/265 (50%), Positives = 162/265 (61%), Gaps = 20/265 (7%)
Query: 105 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDE 164
Y L TTRS +F+GL G LL A G+ +I+G++D G+WPE SF+D
Sbjct: 1 YQLHTTRSPDFLGLPGA---------WGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADV 51
Query: 165 GMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224
G GP P +W G C TG FN CN K+IGARY+ G++ YG N+ + RSPRD DGH
Sbjct: 52 GGGPYPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDA-YGGFNSDGEYRSPRDYDGH 110
Query: 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEAD 284
GTHTAST AG V NAS GGFA GTASG AP AR+A+YK CW CF +D
Sbjct: 111 GTHTASTAAGNVVVNAS-VGGFAFGTASGVAPRARIAVYKVCW--------PDGGCFGSD 161
Query: 285 MLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344
+LAAID AI DGV V+S SIG P D IAI L+AV+ I VA SAGNSGP S+
Sbjct: 162 ILAAIDQAIADGVDVISYSIGGGSPD-PYEDPIAIAFLHAVEAGIFVAASAGNSGPGAST 220
Query: 345 LSNLAPWLITVGAGSLDRDFVGPVV 369
+ N+APW+ TV A +L D P V
Sbjct: 221 VPNVAPWVTTVAASTLKPDIAAPGV 245
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-35
Identities = 64/130 (49%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 368 VVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVL 427
V LG G I+G+++ P NLK +PLVY + + CLPGSL P KVKGKIVL
Sbjct: 2 VTLGNGKTIVGQSLYPGNLK-TYPLVY----KSANSGDVDASLCLPGSLDPSKVKGKIVL 56
Query: 428 CMRGSGFKL-SKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYI 486
C RG +KG VK AGG G+IL N P +G + DAH LPA V Y+D I YI
Sbjct: 57 CDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYI 116
Query: 487 KSTNNPTAII 496
ST+NPTA I
Sbjct: 117 NSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 7e-33
Identities = 44/75 (58%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 527 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD 586
LKPDI APG++ILAAW+ D R + SGTSM+ PHVA AALLK+ HPD
Sbjct: 236 LKPDIAAPGVDILAAWT---PEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 587 WSSAAIRSALMTTAW 601
WS AAI+SALMTTA+
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 53/144 (36%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 490 NNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPS 549
P+AI A TV A + +SRGP +KPDI APG++I++ + +
Sbjct: 171 TAPSAITVGASTVADVAEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMSTAPGSGT-- 227
Query: 550 KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 609
Y SGTSM+ PHVA AAALLK HPDWS A I++ALM T A P
Sbjct: 228 ---------GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNT-------AKP 271
Query: 610 ITNADGSIATPFSFGSGHFRPTKA 633
+ ++DG + G+G +A
Sbjct: 272 LYDSDGVVYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 4e-21
Identities = 55/147 (37%), Positives = 75/147 (51%), Gaps = 21/147 (14%)
Query: 213 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKA 272
D S D GHGTH A +AG G GT G AP A L YK
Sbjct: 53 LGDASAGDATGHGTHVAGIIAGN---------GVNVGTIKGVAPKADLYAYKVL------ 97
Query: 273 SKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 332
G + ++AAI+ A+ DG+ V+++S+G++ + D IAI NAVK ++V
Sbjct: 98 --GPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAIN--NAVKAGVVVV 153
Query: 333 CSAGNSGPAPSSLSN--LAPWLITVGA 357
+AGNSGPAP ++ + AP ITVGA
Sbjct: 154 AAAGNSGPAPYTIGSPATAPSAITVGA 180
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
++ F+SRGP +KPD+ APG NI++ S +P Y SGTSM+
Sbjct: 180 ISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSG----YFEMSGTSMAT 233
Query: 571 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
PHV+ A ALL +P + ++ L TA
Sbjct: 234 PHVSGAIALLLQANPILTPDEVKCILRDTA 263
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-16
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDE 84
YIV F + + +H S+ S K EE A AS LYSYKH NGF+A LT +E
Sbjct: 1 TYIVKFKDGV----SKAAVFSSHKSWHASSK--EEAAGASILYSYKHGFNGFAAKLTEEE 54
Query: 85 AARLSELEEVVSVYPSHP 102
A +L + +V V P
Sbjct: 55 AEKLRKHPDVEYVEPDQV 72
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 5e-16
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 515 TSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVA 574
P++ KPD+ APG+++ +A A+ +YT SGTSM+ PHVA
Sbjct: 177 LVSAPDSPPDEYTKPDVAAPGVDVYSARQGANG---------DGQYTRLSGTSMAAPHVA 227
Query: 575 AAAALLKAIHPDWSSAAIRSALMTTAW 601
AALL A HPD S I+ AL TA+
Sbjct: 228 GVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-15
Identities = 43/156 (27%), Positives = 59/156 (37%), Gaps = 23/156 (14%)
Query: 206 YGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKA 265
+ P D +GHGTH A +A G G AP A+L K
Sbjct: 28 NDDDDNENGPTDPDDGNGHGTHVAGIIAASANN----------GGGVGVAPGAKLIPVKV 77
Query: 266 CWATPKASKAAGNTCFEADMLAAIDDAIRD-GVHVLSISIGTNQPFAFNRDGIAIGALNA 324
S +D+ AAID A D G V+++S+G + AI
Sbjct: 78 LDGDGSGS--------SSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYA-L 128
Query: 325 VKHNILVACSAGNSGPAPSSLSN---LAPWLITVGA 357
K +LV +AGN GP + +P +I VGA
Sbjct: 129 AKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGA 164
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 510 FMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMS 569
+A+F++ G KPDI APG NIL++ Y SGTSM+
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSSGPGGDLGG----------YDSHSGTSMA 222
Query: 570 CPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
P VA AAALL + +P + +R+ L+TTA
Sbjct: 223 APLVAGAAALLLSANPSLTPETLRALLVTTA 253
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 49/129 (37%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 512 ANFTSRGP-NALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+ F+S GP N L LKPD+ APG NIL+ + A Y + SGTSM+
Sbjct: 189 SYFSSWGPTNELY---LKPDVAAPGGNILSTYPLAGG-----------GYAVLSGTSMAT 234
Query: 571 PHVAAAAALLK-AIHPDWSSAAIRSALMTTAWMKNNKALPI---TNADGSIATPFSFGSG 626
P+VA AAALL A H S A +R L +TA K LP T+A +A G+G
Sbjct: 235 PYVAGAAALLIQARHGKLSPAELRDLLASTA-----KPLPWSDGTSALPDLAPVAQQGAG 289
Query: 627 HFRPTKAAD 635
KA
Sbjct: 290 LVNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 44/206 (21%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
N +P D +GHGTH A +AG G + G G AP A L K +
Sbjct: 32 NTVNGRTTPYDDNGHGTHVAGIIAGS--------GRASNGKYKGVAPGANLVGVKVLDDS 83
Query: 270 PKASKAAGNTCFEADMLAAIDDAI----RDGVHVLSISIGTNQPFAFNRDGIAIGALNAV 325
S E+D++A ID + + + V+++S+G ++ D +
Sbjct: 84 GSGS--------ESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLW 135
Query: 326 KHNILVACSAGNSGPAPSSLS---NLAPWLITVGAGSLDRDFVGPVVLGTGMEII----G 378
I+V +AGNSGP P +++ N +P +ITVGA +D + G + I
Sbjct: 136 DAGIVVVVAAGNSGPGPGTITSPGN-SPKVITVGA--VDDN-------GPHDDGISYFSS 185
Query: 379 KTVTPYNLKKMHPLVYAADVVVPGVH 404
+ T K P DVV PG +
Sbjct: 186 RGPTGDGRIK--P-----DVVAPGEN 204
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 8e-14
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A+F+S GP ++ APG++IL+ + Y SGTSM+ P
Sbjct: 163 ASFSSTGPE--------VELAAPGVDILSTY-------------PNNDYAYLSGTSMATP 201
Query: 572 HVAAAAALLKAIHPDWSSAAIRSALMTT 599
HVA AAL+ + P+ ++A +R AL T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 509 PFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSM 568
+A+F+SRGP +KPD+ APG IL+A S + YT SGTSM
Sbjct: 199 DTVASFSSRGPT--YDGRIKPDLVAPGTGILSARSGGGGIGDTSDSA----YTSKSGTSM 252
Query: 569 SCPHVAAAAALL----------KAIHPDWSSAAIRSALMTTA 600
+ P VA AAALL +P S+A +++ L+ +A
Sbjct: 253 ATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 485 YIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSE 544
+ N P A ++ V T +A+F+SRGP+ +KPDI+APG+NI +A
Sbjct: 161 RCSTLNAPPANYPESFAVGATDRNDVLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPG 218
Query: 545 ASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA--AIRSALMTTA 600
Y SGTSM+ PHVA AALL + +P A + L TA
Sbjct: 219 GG-------------YGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETA 263
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 20/100 (20%)
Query: 501 TVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKY 560
+V T +A+F++ G +D + APG++IL+ Y
Sbjct: 179 SVAATDSNDALASFSNYGKKTVD-------LAAPGVDILSTSPGGG-------------Y 218
Query: 561 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
SGTSM+ PHVA AAALL +++P+ ++A I+ A++++A
Sbjct: 219 GYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 528 KPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW 587
DI APG +IL++ + Y SGTSM+ P VA AALL + +PD
Sbjct: 181 GVDIAAPGGDILSSPTTGGG-----------GYATLSGTSMAAPIVAGVAALLLSANPDL 229
Query: 588 SSAAIRSALMTT 599
+ A +++AL++T
Sbjct: 230 TPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-12
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589
DI APG++IL+AW + + SGTSM+ PHVA AA L ++ PD S
Sbjct: 194 DIFAPGVDILSAWIGSDT-----------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 590 AAIRSALMTTA 600
A +++ L+ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 48/163 (29%), Positives = 62/163 (38%), Gaps = 45/163 (27%)
Query: 453 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTV------LHTQ 506
GN +G+ S + T A TV +
Sbjct: 184 GNDGNSGSGTSKPLAT--------------NNPDTGTVGSPATADDVLTVASANKKVPNP 229
Query: 507 PAPFMANFTSRGPNA-LDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSG 565
M+ F+S GP LD LKPDITAPG NI S + + Y SG
Sbjct: 230 NGGQMSGFSSWGPTPDLD---LKPDITAPGGNIY---------STVNDNT----YGYMSG 273
Query: 566 TSMSCPHVAAAAAL----LKAIHPDWSSA----AIRSALMTTA 600
TSM+ PHVA A+AL LK +P S +++ LM TA
Sbjct: 274 TSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTA 316
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 8e-12
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 33/155 (21%)
Query: 210 NATEDDRS-PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKAC-- 266
N T DD + +D +GHGTH A +A N G G AP A L K
Sbjct: 27 NFTGDDNNDYQDGNGHGTHVAGIIAAL--DN--GVGV------VGVAPEADLYAVKVLND 76
Query: 267 --WATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
T +D++A I+ AI +G+ ++++S+G R+ I A
Sbjct: 77 DGSGT------------YSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIK----KA 120
Query: 325 VKHNILVACSAGNSGPAPSSLSNLA--PWLITVGA 357
ILV +AGNSG SS A P +I VGA
Sbjct: 121 YAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGA 155
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+A F+ RGP +KPDI APG+NIL A SP YT SGTS++
Sbjct: 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTA-----SPGG--------GYTTRSGTSVAA 403
Query: 571 PHVAAAAALL--KAIH----PDWSSAAIRSALMTTA 600
VA A ALL I P I++ L+ A
Sbjct: 404 AIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 56/237 (23%), Positives = 77/237 (32%), Gaps = 75/237 (31%)
Query: 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKG 201
G V VG++D+G+ F+ ++ A YY
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAG---------------------------RVSEASYY--- 31
Query: 202 FEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLA 261
+A S D D HGTH A +A R GG G A A L
Sbjct: 32 ----VAVNDAG--YASNGDGDSHGTHVAGVIAAARD------GGGMHGVAPD----ATLY 75
Query: 262 IYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTN------------QP 309
+A + AG+T +AD+ AA D GV +++ S G N
Sbjct: 76 SARASAS-------AGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSA 128
Query: 310 FAFNRDGIAIGALNAVKHNILVACSAGNSGPA-PSSLSNLAPWL--------ITVGA 357
+A A L +AGN G A PS + P+L I V A
Sbjct: 129 ATQGNTLLAA-LARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVA 184
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 31/159 (19%)
Query: 206 YGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKA 265
YG N +D P D +GHGTH A + A G G A G A ++ K
Sbjct: 48 YGW-NFVNNDNDPMDDNGHGTHVAGIIG--------AVGNNGIGIA-GVAWNVKIMPLKF 97
Query: 266 CWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAV 325
+ +G T +D + AID A+ G +++ S G P RD IA A+
Sbjct: 98 L-----GADGSGTT---SDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAI 145
Query: 326 KHNILVACSAGNSG------PA-PSSLSNLAPWLITVGA 357
IL +AGN G P P+S +I+V A
Sbjct: 146 DAGILFVAAAGNDGTNNDKTPTYPASYDL--DNIISVAA 182
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
A+F+S GP A D LKPD+ A G I + + T +GTS SC
Sbjct: 186 KASFSSIGPTA-DGR-LKPDVMALGTGIYVINGDGN-------------ITYANGTSFSC 230
Query: 571 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
P +A A L HP+W++ I+ A++ +A
Sbjct: 231 PLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-10
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 399 VVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458
+V + ++ C P L VKGKIVL RG + K +RAG G+I+ N+
Sbjct: 10 LVYVGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDTG 69
Query: 459 GNE---YSYDAHYLPATAVLYDDA 479
G +P + Y+D
Sbjct: 70 GLGGTVGDPSDVTIPVVFISYEDG 93
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589
D++APG IL+ + Y SGTSM+ PHVA AALL + P S+
Sbjct: 200 DVSAPGGGILSTTPDGD-------------YAYMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 590 AAIRSALMTTA 600
+ +R AL TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 26/173 (15%)
Query: 193 IGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTAS 252
+ RY + Y ++ D D +GHGTH A +A G
Sbjct: 16 LSGRYIGLAYRNGYDFVDNDPDPTPDDDNNGHGTHVAGIIAA---------GDNNGSGGV 66
Query: 253 GGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR--DGVHVLSISIGTN-QP 309
G AP A+L K + G +++ AI+ A + + V+++S+G P
Sbjct: 67 GVAPNAKLESVKVL------PGSGGTD---SELAGAIEWAAERPNDIRVINMSLGPVDGP 117
Query: 310 FAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSN----LAPWLITVGA 357
+ I A+N A L +AGN G + A +ITVGA
Sbjct: 118 PSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNNPVSDPASANNIITVGA 170
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 23/149 (15%)
Query: 191 KIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT 250
K+ G Y G Y N D P D GHGTH A +A PNA F
Sbjct: 40 KVAGG-YDFVG--DDYDGTNPPVPDDDPMDCQGHGTHVAGIIAAN--PNAYGF------- 87
Query: 251 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPF 310
+G AP A L Y+ + ++ E ++AA A DG V++ S+G P
Sbjct: 88 -TGVAPEATLGAYRV-FGCSGST-------TEDTIIAAFLRAYEDGADVITASLGG--PS 136
Query: 311 AFNRDGIAIGALNAVKHNILVACSAGNSG 339
++ D A+ A V ++V +AGN G
Sbjct: 137 GWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 25/156 (16%)
Query: 209 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA 268
N D GHGTH + T+ GG A+G G AP A L K
Sbjct: 30 ENRRISATEVFDAGGHGTHVSGTIG----------GGGAKGVYIGVAPEADLLHGKVL-- 77
Query: 269 TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG-TNQPFAFNRDGIAIGALNAVKH 327
+ ++A ++ A+ V+S+S+G T + A+ AL+ +
Sbjct: 78 -------DDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEE--AVEALSN-QT 127
Query: 328 NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRD 363
L SAGN G S A ++VGA +DRD
Sbjct: 128 GALFVVSAGNEGHGTSGSPGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 40/210 (19%)
Query: 211 ATEDDRSPRDMDG--HGTHTASTVAGRRVPNAS--AFGGFAEGTASGGAPLARLAIYKAC 266
A +D + DG HG H A VAG N G +G A P A+L K
Sbjct: 69 ADNNDDILDEDDGSSHGMHVAGIVAG----NGDEEDNGEGIKGVA----PEAQLLAMKV- 119
Query: 267 WATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVK 326
S G + ++ AI+DA++ G V+++S+G+ F D A +
Sbjct: 120 -----FSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRARE 174
Query: 327 HNILVACSAGNSGPAPSS----LSNLAPWLITVGAGSLDRD------FVGPVVLGTGMEI 376
++V +AGN G + S L+ P TVG+ + D V G ++
Sbjct: 175 AGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKVPNPNGGQM 234
Query: 377 IGKT---VTP-YNLKKMHPLVYAADVVVPG 402
G + TP +LK P D+ PG
Sbjct: 235 SGFSSWGPTPDLDLK---P-----DITAPG 256
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 507 PAPFMANFTSRGPNALDPYILKPDITAP-GLNILAAWSEASSPSKLAFDKRIVKYTIFSG 565
R P KPD+TAP G+N P+ F G
Sbjct: 171 TPSSFDPVGIRLPTPEVR--QKPDVTAPDGVNGTVDGDGDGPPN-------------FFG 215
Query: 566 TSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
TS + PH A AAL+ + +P + A IR AL +TA
Sbjct: 216 TSAAAPHAAGVAALVLSANPGLTPADIRDALRSTA 250
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 20/95 (21%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNIL-------AAWSEASSPSKLAFDKRIVKYTIFS 564
A++++ GP D++APG + S + S Y
Sbjct: 204 ASYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGS-----TYGFLQ 250
Query: 565 GTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599
GTSM+ PHVA AAL+K+++P + A I S L +T
Sbjct: 251 GTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 590
+ APG NI + + + Y SGTS + PHV+ AAALL P ++
Sbjct: 208 LAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 591 AIRSALMTTA 600
+R L+TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 43/158 (27%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
+ D D +GHGTH A TV G+ G A A L K
Sbjct: 52 DFVGGD-PDSDCNGHGTHVAGTVGGKTY---------------GVAKKANLVAVKVLDCN 95
Query: 270 PKASKAAGNTCFEADMLAAIDDAIRDGVH-----VLSISIGTNQPFAFNRDGIAIGALNA 324
+ + ++A ++ D V ++S+G A + A+ A A
Sbjct: 96 GSGT--------LSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDA---AVAA--A 142
Query: 325 VKHNILVACSAGNSG-PA----PSSLSNLAPWLITVGA 357
V ++V +AGNS A P+S AP ITVGA
Sbjct: 143 VNAGVVVVVAAGNSNQDACNYSPAS----APEAITVGA 176
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 20/89 (22%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
++F+ GP D+ APG NI++ SGTS + P
Sbjct: 191 SSFSLPGP--------WVDLAAPGENIVSL------------SPGGDGLATTSGTSFAAP 230
Query: 572 HVAAAAALLKAIHPDWSSAAIRSALMTTA 600
V+ AAL+++ PD ++A +R + TA
Sbjct: 231 FVSGTAALVRSRFPDLTAAQVRRRIEATA 259
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 220 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR-LAIYK--ACWATPKASKAA 276
D DGHGT A +AGR GF SG AP AR L I + A + + +
Sbjct: 49 DCDGHGTLVAGIIAGRPGEG----DGF-----SGVAPDARILPIRQTSAAFEPDEGTSGV 99
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGAL--NAVKHNILVACS 334
G+ + AI A G V++IS+ P D +GA A+ ++V +
Sbjct: 100 GDL---GTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAA 156
Query: 335 AGNSGPAPSSLSNLAP-WLITV-GAGSLDRD 363
AGN+G + + P W V GS+DRD
Sbjct: 157 AGNTGGDGQKTTVVYPAWYPGVLAVGSIDRD 187
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 45/174 (25%), Positives = 62/174 (35%), Gaps = 41/174 (23%)
Query: 201 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 260
+ Y + + P D +GHGTHT T+ G +G G AP AR
Sbjct: 31 SADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGNDG----------DGQQIGVAPGARW 80
Query: 261 AIYKACWATPKASKAAGNTCFEAD-------MLAAIDDAIRD-----GVHVLSISIGTNQ 308
+A N +AD MLA D A V++ S G
Sbjct: 81 IACRAL---------DRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPS 131
Query: 309 PFAFNRDGI--AIGALNAVKHNILVACSAGNSGPAPSSL-SNLA--PWLITVGA 357
+ + + A+ A A I +AGN GP S+L + A P VGA
Sbjct: 132 G---DNEWLQPAVAAWRAA--GIFPVFAAGNDGPRCSTLNAPPANYPESFAVGA 180
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.4 bits (114), Expect = 1e-05
Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 23/174 (13%)
Query: 192 IIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTA 251
+ + L G G + + D +GHGTH A T+A N + G A G
Sbjct: 153 VDASHPDLAGSAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNGAGVAGVAPGAK 212
Query: 252 SGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG--VHVLSISIGTNQP 309
+ +G +D+ I+ A G V+++S+G +
Sbjct: 213 LLLVK------------VLGSGGGSGEL---SDVAEGIEGAANLGGPADVINLSLGGSLS 257
Query: 310 FAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPW------LITVGA 357
+ + A A +++ +AGN G S P +I VGA
Sbjct: 258 DSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGA 311
|
Length = 508 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.0 bits (113), Expect = 1e-05
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 505 TQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFS 564
+ +A+F++ G DI APG+NIL S + Y S
Sbjct: 312 LDLSDTVASFSNDGSPT------GVDIAAPGVNIL------SLSAVNTLPGDGADYVTLS 359
Query: 565 GTSMSCPHVAAAAALLKAIHP-DWSSAAIRSALMTTA 600
GTSM+ PHV+ AAL+ + +P + + A +R+ ++TTA
Sbjct: 360 GTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTA 396
|
Length = 508 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 208 PLNATEDDRSPR-DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKAC 266
PL HGTH AS + G+ P +S G APL R
Sbjct: 35 PLFTYAAAACQDGGASAHGTHVASLIFGQ--PCSSVEGI---------APLCRGLN---- 79
Query: 267 WATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGAL-NAV 325
P ++ C + D+ AI+ A+ G H+++IS G + G A L NAV
Sbjct: 80 --IPIFAEDRRG-CSQLDLARAINLALEQGAHIINISGG-----RLTQTGEADPILANAV 131
Query: 326 K----HNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
+N+L+ +AGN G A + P ++ VGA
Sbjct: 132 AMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 22/95 (23%)
Query: 529 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 588
DI APG++I++A Y SGTSM+ PHVA AAL W+
Sbjct: 213 VDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAAL-------WA 252
Query: 589 SAAIRSALMTTAWMKNNKALPITNADGSIATPFSF 623
A ++ A +A A
Sbjct: 253 EALPKAGG--RALAALLQARLTAARTTQFAPGLDL 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 32/129 (24%)
Query: 220 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNT 279
D GHGT A +A A G G AP + Y+ + +
Sbjct: 51 DKLGHGTAVAGQIA-------------ANGNIKGVAPGIGIVSYRVF--------GSCGS 89
Query: 280 CFEADMLAAIDDAIRDGVHVLSISIG---------TNQPFAFNRDGIAIGALNAVKHNIL 330
+ ++ AI DA DGV V+++S+G + +N AI A +
Sbjct: 90 AESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINY--AKSKGSI 147
Query: 331 VACSAGNSG 339
V +AGN G
Sbjct: 148 VVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 29/152 (19%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
+ ++D D +GHGTH A +A A+ G G A G AP A++ K A
Sbjct: 56 DFVDNDSDAMDDNGHGTHVAGIIA------AATNNG--TGVA-GVAPKAKIMPVKVLDAN 106
Query: 270 PKASKAAGNTCFEADMLAAIDDAIR----DGVHVLSISIGTNQPFAFNRDGIAIGALNAV 325
S LA I + IR G V+++S+G ++ I A
Sbjct: 107 GSGS------------LADIANGIRYAADKGAKVINLSLGGGLGSTALQEAINY----AW 150
Query: 326 KHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
++V +AGN G + S P I V A
Sbjct: 151 NKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAA 182
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 26/150 (17%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA 275
+ D+DGHGTH A +AG+ ++S G AP A+L S
Sbjct: 48 DTKDDVDGHGTHVAGIIAGKGNDSSSI------SLYKGVAPKAKLYFQ----DIGDTSGN 97
Query: 276 AGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACS 334
+ + + + DA G + S S G+ + A A + +IL S
Sbjct: 98 LSSPPDLNKLFSPMYDA---GARISSNSWGSPVNNGYTLLARAYDQF-AYNNPDILFVFS 153
Query: 335 AGNSGP-------APSSLSNLAPWLITVGA 357
AGN G +P++ N ++TVGA
Sbjct: 154 AGNDGNDGSNTIGSPATAKN----VLTVGA 179
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 42/161 (26%), Positives = 60/161 (37%), Gaps = 20/161 (12%)
Query: 199 LKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 258
L G +L N ++ D+DGHGT A A +G AP A
Sbjct: 17 LSGKPKLVPGWNFVSNNDPTSDIDGHGTACAGVAAAVGNNGLGV---------AGVAPGA 67
Query: 259 RLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGI- 317
+L + + A + +D+ AI A +G V+S S G + I
Sbjct: 68 KLMPVRIADSLGYA--------YWSDIAQAITWAADNGADVISNSWGGSDSTESISSAID 119
Query: 318 -AIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
A K +V +AGNSG + SS P +I V A
Sbjct: 120 NAATYGRNGK-GGVVLFAAGNSGRSVSSGYAANPSVIAVAA 159
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 49/195 (25%), Positives = 71/195 (36%), Gaps = 53/195 (27%)
Query: 182 AFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNAS 241
AF N +I+G ++ ++ + D D HGT ST+AG
Sbjct: 19 AFKHLFKNLRILGEYDFVDN-----------SNNTNYTD-DDHGTAVLSTMAG------- 59
Query: 242 AFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADM-LAAIDDAIRDGVHVL 300
+ G G AP A + + A T E D +AA + A GV ++
Sbjct: 60 ----YTPGVMVGTAPNASYYLART-------EDVASETPVEEDNWVAAAEWADSLGVDII 108
Query: 301 SISIGTNQPFAFNR-------DG----IAIGALNAVKHNILVACSAGNSGP-------AP 342
S S+G DG I+ A A +LV SAGN G AP
Sbjct: 109 SSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAP 168
Query: 343 SSLSNLAPWLITVGA 357
+ A +++VGA
Sbjct: 169 AD----AENVLSVGA 179
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 510 FMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMS 569
+ANF++ G +D + APG I + + +Y SGTSM+
Sbjct: 220 LVANFSNYGKKNVD-------VFAPGERIYSTTPDN-------------EYETDSGTSMA 259
Query: 570 CPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
P V+ AAL+ + +P+ ++ ++ ++ +
Sbjct: 260 APVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
+D GHGTH A T+ GR VP G G A A +A+ K
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDVP----------GPRYGVARGAEIALIG------KVLGDG 84
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGA 321
G + +LA I A+ +G V+S+S+G + P ++ G G
Sbjct: 85 GGG--DGGILAGIQWAVANGADVISMSLGADFPGLVDQ-GWPPGL 126
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 571
A++++ G Y+ D+ APG+ I + A D Y FSGTS + P
Sbjct: 167 ASYSNYGN-----YV---DLVAPGVGI----WTTGTGRGSAGDYPGGGYGSFSGTSFASP 214
Query: 572 HVAAAAALLKAIHPDWSSAAIRSALMTT 599
A AAL+ + +P+ + A + L +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589
D APG+++ A Y SGTS + P V AA ALL P
Sbjct: 168 DFAAPGVDVWVAAPGG-------------GYRYVSGTSFAAPFVTAALALLLQASPLAPD 214
Query: 590 AAIRSALMTTA 600
A T
Sbjct: 215 DARARLAATAK 225
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 27/134 (20%)
Query: 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGN 278
RD +GHGTH A AG G G AP A L + K K
Sbjct: 75 RDENGHGTHVAGIAAGN---------GDNNPDFKGVAPEAELIVVKL--KQAKKYLREFY 123
Query: 279 ---TCF-EADMLAAIDDAIRDGVH-----VLSISIGTNQPFAFNRDGIAI--GALNAV-- 325
+ E D++ AI + V++IS+GTN + DG ++ ++A+
Sbjct: 124 EDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFG---SHDGTSLLERYIDAISR 180
Query: 326 KHNILVACSAGNSG 339
I V AGN G
Sbjct: 181 LRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 411 CLPGSLTPEK--VKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY------ 462
C G+ VKGKIVL RG K ++AG +I+ N+ +
Sbjct: 33 CGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL 92
Query: 463 SYDAHYLPATAVLYDDAIKIHEYIKSTNN 491
+P + Y D + +++
Sbjct: 93 ESTDPSIPTVGISYADGEALLSLLEAGKT 121
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 512 ANFTSRGPNALDPYILKPDITAPGLN-ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
A+F++ G DI APG+ IL+ + Y SGTSM+
Sbjct: 199 ASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGG-------GNYEYLSGTSMAA 243
Query: 571 PHVAAAAALLKAIHPDWSSA 590
PHV+ AAL+ + PD +
Sbjct: 244 PHVSGVAALVLSKFPDVFTP 263
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 27/95 (28%)
Query: 515 TSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFS-----GTSMS 569
+SRGP A D L I+APG I AS P +T+ GTSMS
Sbjct: 333 SSRGPTA-DGA-LGVSISAPGGAI------ASVP----------NWTLQGSQLMNGTSMS 374
Query: 570 CPHVAAAAAL----LKAIHPDWSSAAIRSALMTTA 600
P+ AL LKA ++ ++R AL TA
Sbjct: 375 SPNACGGIALLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 24/122 (19%)
Query: 488 STNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPG------------ 535
+ + I +AR PAP A TS GP P +KPD+ A G
Sbjct: 177 AITSDDDITDRARYS-AVGPAPAGA-TTSSGPG--SPGPIKPDVVAFGGNLAYDPSGNAA 232
Query: 536 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSA 595
L+ + SSPS F GTS + P A AA L A P+ S IR A
Sbjct: 233 DGDLSLLTTLSSPSGGGF-------VTVGGTSFAAPLAARLAAGLFAELPELSPETIR-A 284
Query: 596 LM 597
L+
Sbjct: 285 LL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 421 VKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS-PANGNEYSYDAHYLPATAVLYDDA 479
VKGKI L RG + K K AG VG+I+ N+ +A ++P + +D
Sbjct: 46 VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDG 105
Query: 480 IKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 519
E +K+ + + T P +A+F+SRGP
Sbjct: 106 ----EALKAALESSKKLT-FNTKKEKATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 590
+ APG NI + + + S Y +GTSM+ PHVAA A+L+ +I+P S
Sbjct: 534 LAAPGTNIYSTFPKNS-------------YRKLNGTSMAAPHVAAIASLILSINPSLSYE 580
Query: 591 AI----RSALMTTAWMKN 604
+ + +++ +KN
Sbjct: 581 EVIRILKESIVQLPSLKN 598
|
Length = 639 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 38/124 (30%), Positives = 46/124 (37%), Gaps = 22/124 (17%)
Query: 242 AFGGFAEGTA-----SGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG 296
GG EG A AP A LA + AG E D AAI G
Sbjct: 44 GSGGGDEGRAMLEIIHDIAPGAELAFH-----------TAGGG--ELDFAAAIRALAAAG 90
Query: 297 VHVLSISIGTNQPFAFNRDGIAIGALNAV--KHNILVACSAGNSGPAPSSLS-NLAPWLI 353
++ IG F +DG A++ V +L SAGN G + S AP I
Sbjct: 91 ADIIVDDIGYLNEPFF-QDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAI 149
Query: 354 TVGA 357
VGA
Sbjct: 150 AVGA 153
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 777 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.85 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.7 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.32 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.29 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.87 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.87 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.84 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.84 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.82 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.75 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.71 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.71 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.68 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.68 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.63 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.62 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.62 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.6 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.59 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.54 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.48 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.33 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.31 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.21 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.62 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.06 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.85 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.61 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.28 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.12 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 95.9 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.77 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 95.58 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.27 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 94.63 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.32 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 92.5 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 87.68 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 87.19 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 81.77 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=449.51 Aligned_cols=307 Identities=56% Similarity=0.930 Sum_probs=257.1
Q ss_pred cccccCCcccccccchhhhcccCccccccccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccc
Q 004047 105 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 184 (777)
Q Consensus 105 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~ 184 (777)
++|+++++++++|+... |. ..+|..+++|+||+|||||||||++||+|++....+++..|.+.|..+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~ 71 (307)
T cd04852 1 YQLHTTRSPDFLGLPGA----WG-----GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFN 71 (307)
T ss_pred CCccccCCHHHcCCCCC----CC-----cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcC
Confidence 46889999999999865 11 0367889999999999999999999999999988899999999999988887
Q ss_pred cccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEE
Q 004047 185 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYK 264 (777)
Q Consensus 185 ~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~k 264 (777)
...|++|+++.++|.+++..... .....+..++.|..||||||||||||+...+.... +...+.+.||||+|+|+.+|
T Consensus 72 ~~~~~~ki~g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~-~~~~~~~~GvAP~a~l~~~k 149 (307)
T cd04852 72 PFSCNNKLIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVG-GFAFGTASGVAPRARIAVYK 149 (307)
T ss_pred ccCcCCeEEEEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCccccccc-ccccccEEEECCCCeEEEEE
Confidence 77899999999999887554322 12233456788999999999999999876554444 55566789999999999999
Q ss_pred eecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC
Q 004047 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344 (777)
Q Consensus 265 v~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~ 344 (777)
+++.. + .+..+++++||++|++++++|||||||.... ....+.+..++..+.++|++||+||||+|+...+
T Consensus 150 v~~~~--~------~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~ 220 (307)
T cd04852 150 VCWPD--G------GCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGAST 220 (307)
T ss_pred EecCC--C------CccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCc
Confidence 99874 3 4789999999999999999999999998332 4566778888889999999999999999987777
Q ss_pred CcCCCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccce
Q 004047 345 LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGK 424 (777)
Q Consensus 345 ~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ 424 (777)
..+..||+++||+++
T Consensus 221 ~~~~~~~vi~Vga~~----------------------------------------------------------------- 235 (307)
T cd04852 221 VPNVAPWVTTVAAST----------------------------------------------------------------- 235 (307)
T ss_pred ccCCCCCeEEEEecc-----------------------------------------------------------------
Confidence 778889999999621
Q ss_pred EEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEee
Q 004047 425 IVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLH 504 (777)
Q Consensus 425 ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~ 504 (777)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHC
Q 004047 505 TQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH 584 (777)
Q Consensus 505 ~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 584 (777)
+||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++
T Consensus 236 ----------------------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~ 290 (307)
T cd04852 236 ----------------------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAH 290 (307)
T ss_pred ----------------------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHC
Confidence 477999999999999875211 1122233689999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhccc
Q 004047 585 PDWSSAAIRSALMTTAW 601 (777)
Q Consensus 585 P~~s~~~ik~~L~~TA~ 601 (777)
|.|+|.+||++|++||+
T Consensus 291 p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 291 PDWSPAAIKSALMTTAY 307 (307)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 99999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=451.66 Aligned_cols=293 Identities=20% Similarity=0.173 Sum_probs=210.6
Q ss_pred cccc--ccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccce---eeeeeecccccccccCC
Q 004047 134 DLLS--KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKK---IIGARYYLKGFEQLYGP 208 (777)
Q Consensus 134 ~~~~--~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~k---iig~~~~~~~~~~~~~~ 208 (777)
++|. .+.+|+||+|||||||||++||||.+.-... +....|.- .++. +++. -+.+++|.++
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd----giDd--D~nG~vdd~~G~nfVd~------- 370 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK----GIDD--DNNGNVDDEYGANFVNN------- 370 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc----cccc--ccCCcccccccccccCC-------
Confidence 4554 3678999999999999999999998541000 00001100 0000 0111 1122333321
Q ss_pred CCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHH
Q 004047 209 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288 (777)
Q Consensus 209 ~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~a 288 (777)
...|.|..||||||||||||... ....+.||||+|+|+++|+++.. | .+..+++++|
T Consensus 371 ------~~~P~D~~GHGTHVAGIIAA~gn---------N~~Gi~GVAP~AkLi~vKVld~~--G------~G~~sdI~~A 427 (639)
T PTZ00262 371 ------DGGPMDDNYHGTHVSGIISAIGN---------NNIGIVGVDKRSKLIICKALDSH--K------LGRLGDMFKC 427 (639)
T ss_pred ------CCCCCCCCCcchHHHHHHhcccc---------CCCceeeeecccccceEEEecCC--C------CccHHHHHHH
Confidence 23568899999999999999732 22235799999999999999876 4 4688999999
Q ss_pred HHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------CcC----CCc
Q 004047 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--------------LSN----LAP 350 (777)
Q Consensus 289 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~--------------~~~----~ap 350 (777)
|+||++.|++|||||||+. .....+..++.+|.++|++||+||||+|+.... ++. ..|
T Consensus 428 I~yA~~~GA~VINmSlG~~----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~ 503 (639)
T PTZ00262 428 FDYCISREAHMINGSFSFD----EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLR 503 (639)
T ss_pred HHHHHHCCCCEEEeccccC----CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCC
Confidence 9999999999999999983 234567778889999999999999999854221 111 135
Q ss_pred ceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEec
Q 004047 351 WLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMR 430 (777)
Q Consensus 351 ~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~ 430 (777)
++|+|||++.+..
T Consensus 504 nVIaVGAv~~d~~------------------------------------------------------------------- 516 (639)
T PTZ00262 504 NVITVSNLIKDKN------------------------------------------------------------------- 516 (639)
T ss_pred CEEEEeeccCCCC-------------------------------------------------------------------
Confidence 6777776532110
Q ss_pred CCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCc
Q 004047 431 GSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPF 510 (777)
Q Consensus 431 g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 510 (777)
....
T Consensus 517 ----------------------------------------------------------------------------~~~s 520 (639)
T PTZ00262 517 ----------------------------------------------------------------------------NQYS 520 (639)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 0013
Q ss_pred cccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHH
Q 004047 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 590 (777)
Q Consensus 511 ~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~ 590 (777)
++.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|+++
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 3456666532 34999999999999987 789999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCCCceeeC
Q 004047 591 AIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDA 642 (777)
Q Consensus 591 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~ 642 (777)
+|+++|++||.+++.. .+...++|+||+++|++.++-+..
T Consensus 581 qV~~iL~~TA~~l~~~------------~n~~~wgG~LDa~kAV~~Ai~~~~ 620 (639)
T PTZ00262 581 EVIRILKESIVQLPSL------------KNKVKWGGYLDIHHAVNLAIASKH 620 (639)
T ss_pred HHHHHHHHhCccCCCC------------CCccccCcEEcHHHHHHHHHhccc
Confidence 9999999999876431 111222389999999997665433
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=412.09 Aligned_cols=244 Identities=27% Similarity=0.336 Sum_probs=198.9
Q ss_pred ccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCC
Q 004047 136 LSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDD 215 (777)
Q Consensus 136 ~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 215 (777)
|..+++|+||+|||||||||.+||+|.+. +...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCC--------------C
Confidence 78899999999999999999999999631 00011111 1
Q ss_pred CCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC
Q 004047 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 295 (777)
Q Consensus 216 ~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~ 295 (777)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+. + .+..+.++++|+||++.
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~------------~~~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~a~~~a~~~ 98 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE------------QCLGFAPDAEIYIFRVFTNN--Q------VSYTSWFLDAFNYAILT 98 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC------------CceeECCCCEEEEEEeecCC--C------CchHHHHHHHHHhhhhc
Confidence 2355788999999999998731 24799999999999999876 3 35678899999999999
Q ss_pred CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcC--CCcceeeeccCccccccccceEeCCC
Q 004047 296 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 296 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~--~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
++||||||||... +...++..++.++.++|++||+||||+|+...+... ..+++|+|||++.
T Consensus 99 ~~~Vin~S~G~~~---~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------- 162 (255)
T cd07479 99 KIDVLNLSIGGPD---FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------- 162 (255)
T ss_pred CCCEEEeeccCCC---CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------
Confidence 9999999999832 334566667788889999999999999986555443 3478999997532
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCcCC
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKP 529 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~d~~~KP 529 (777)
.+.++.|||+|++.. ..+++||
T Consensus 163 ------------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~ 188 (255)
T cd07479 163 ------------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKP 188 (255)
T ss_pred ------------------------------------------------------CCccccccCCCCCcccccCCCCCcCc
Confidence 247789999997531 2478899
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCC----CCCHHHHHHHHHhcccccC
Q 004047 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP----DWSSAAIRSALMTTAWMKN 604 (777)
Q Consensus 530 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~~s~~~ik~~L~~TA~~~~ 604 (777)
||.|||.+|+++... +.|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 189 di~apG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 189 DIVTYGSGVYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cEEecCCCeeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999999999988765 6789999999999999999999999998 7899999999999999874
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=444.34 Aligned_cols=411 Identities=24% Similarity=0.235 Sum_probs=245.9
Q ss_pred CCCCceEEEEeecCCCCCCCCCCC-CCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCC
Q 004047 140 RYGQDVIVGLVDNGVWPESKSFSD-EGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 218 (777)
Q Consensus 140 ~~G~GV~VgVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 218 (777)
++|+||+|||||||||+.||+|++ ++.+++...|++....+.. .....+...+.............+.+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 589999999999999999999985 4677888999887654321 111222222221100000000011223456
Q ss_pred CCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCcc--CCCCCCHHHHHHHHHHHHhC-
Q 004047 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA--AGNTCFEADMLAAIDDAIRD- 295 (777)
Q Consensus 219 ~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~--~~~~~~~~~i~~ai~~a~~~- 295 (777)
.|..||||||||||||+.. .+..+.||||+|+|+++|++......... ....+..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~---------~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGD---------NNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCchHHHHHHHhcCCC---------CCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 7899999999999999843 23446799999999999999876210000 00126789999999999874
Q ss_pred ----CceEEEeecCCCCCCCCCccHHHHHHHHHHhC-CcEEEEecCCCCCCCCCCcCC---C----cceeeeccCccccc
Q 004047 296 ----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPSSLSNL---A----PWLITVGAGSLDRD 363 (777)
Q Consensus 296 ----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~aAGN~G~~~~~~~~~---a----p~vitVgAs~~~~~ 363 (777)
.++|||||||.+...+...++++.+++.+..+ |++||+||||+|....+.... . .--+.|+... ..
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KG 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cc
Confidence 57899999999666677788898888887776 999999999999754433321 0 0113333211 11
Q ss_pred cccceEeCCCcEEE-------eeeeccCCC----CcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCC
Q 004047 364 FVGPVVLGTGMEII-------GKTVTPYNL----KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 432 (777)
Q Consensus 364 ~~~~~~~~~~~~~~-------g~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~ 432 (777)
+..++....-..+. |+....... ...+.+++. ..++.+..+..
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~--------------------------~t~i~v~y~~~ 277 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFE--------------------------GTTVYVYYYLP 277 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEEC--------------------------CeEEEEEEcCC
Confidence 11011110000000 000000000 000011110 11111111100
Q ss_pred c------chhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEe----ceEE
Q 004047 433 G------FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQ----ARTV 502 (777)
Q Consensus 433 ~------~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~----~~~~ 502 (777)
. ...-+.. -...|..-+.++.... .......|+|...+...+.. ++......+.++.. ..++
T Consensus 278 ~~~~g~~~i~i~~~-~~~~GiW~i~~~~~~~---~~g~~~~Wlp~~~~~~~~t~----f~~~~~~~tit~Pa~~~~vitV 349 (455)
T cd07478 278 EPYTGDQLIFIRFK-NIKPGIWKIRLTGVSI---TDGRFDAWLPSRGLLSENTR----FLEPDPYTTLTIPGTARSVITV 349 (455)
T ss_pred CCCCCCeEEEEEcc-CCCccceEEEEEeccC---CCceEEEEecCcCcCCCCCE----eecCCCCceEecCCCCCCcEEE
Confidence 0 0000011 1223444444444321 11112345554433322221 22222333333221 1233
Q ss_pred eecC-CCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHH
Q 004047 503 LHTQ-PAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLK 581 (777)
Q Consensus 503 ~~~~-~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 581 (777)
.... ..+.++.||||||+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+
T Consensus 350 ga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~ 414 (455)
T cd07478 350 GAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLL 414 (455)
T ss_pred EEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHH
Confidence 3322 345699999999998 699999999999999999986 789999999999999999999999
Q ss_pred HHC------CCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeee
Q 004047 582 AIH------PDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSG 626 (777)
Q Consensus 582 q~~------P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 626 (777)
|++ |.+++++||++|++||+++.. ..+++++||||
T Consensus 415 ~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 415 QWGIVRGNDPYLYGEKIKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HhchhccCCCCCCHHHHHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 985 557999999999999998752 35688999998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-49 Score=411.45 Aligned_cols=271 Identities=26% Similarity=0.219 Sum_probs=202.0
Q ss_pred cCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCC
Q 004047 139 ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 218 (777)
Q Consensus 139 g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 218 (777)
|++|+||+|||||||||..||++.+..... +.+...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~-----------------------l~~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGD-----------------------LPGNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCC-----------------------CCcceeeccc-------------cCCC
Confidence 579999999999999999998653221111 1111111110 1235
Q ss_pred CCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCce
Q 004047 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 298 (777)
Q Consensus 219 ~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvd 298 (777)
.|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|+++.|++
T Consensus 45 ~d~~gHGT~vAgii~-------------------GvAP~a~l~~~~~~-------------~~~~~i~~ai~~a~~~g~~ 92 (275)
T cd05562 45 SGGGDEGRAMLEIIH-------------------DIAPGAELAFHTAG-------------GGELDFAAAIRALAAAGAD 92 (275)
T ss_pred CCCCchHHHHHHHHh-------------------ccCCCCEEEEEecC-------------CCHHHHHHHHHHHHHcCCC
Confidence 578899999999994 89999999998862 3578899999999999999
Q ss_pred EEEeecCCCCCCCCCccHHHHHHHHHHhC-CcEEEEecCCCCCCCCC-CcCCCcceeeeccCccccccccceEeCCCcEE
Q 004047 299 VLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPSS-LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI 376 (777)
Q Consensus 299 VIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~aAGN~G~~~~~-~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~ 376 (777)
|||||||......+....+..+++++.++ |++||+||||+|+.... .+...|++|+|||++...........+
T Consensus 93 Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----- 167 (275)
T cd05562 93 IIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----- 167 (275)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----
Confidence 99999998432222345677888888887 99999999999975332 234569999999976533110000000
Q ss_pred EeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCC
Q 004047 377 IGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 456 (777)
Q Consensus 377 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 456 (777)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCC
Q 004047 457 ANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGL 536 (777)
Q Consensus 457 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~ 536 (777)
........+.||++||+. ++++||||+|||+
T Consensus 168 -----------------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg 198 (275)
T cd05562 168 -----------------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDG 198 (275)
T ss_pred -----------------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCc
Confidence 000012345678899987 5889999999975
Q ss_pred -cEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCC
Q 004047 537 -NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADG 615 (777)
Q Consensus 537 -~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 615 (777)
++.++... +.|..++|||||||||||++|||+|++|+|++++||++|++||+++...
T Consensus 199 ~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~--------- 256 (275)
T cd05562 199 VNGTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP--------- 256 (275)
T ss_pred ccccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC---------
Confidence 44555443 6899999999999999999999999999999999999999999987532
Q ss_pred CCCCCCceeeeccCccccCC
Q 004047 616 SIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 616 ~~~~~~~~G~G~vn~~~Al~ 635 (777)
..+..||||+||+.+|++
T Consensus 257 --g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 257 --GYDNASGSGLVDADRAVA 274 (275)
T ss_pred --CCCCCcCcCcccHHHHhh
Confidence 356789999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=416.80 Aligned_cols=288 Identities=26% Similarity=0.259 Sum_probs=190.2
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (777)
|+||+|||||||||++||||.++... .|. ..|+ +...++.+.++..+ ....+.|+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~------~~~d---~~~~~~~g~d~~~~------------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWK------LKFD---YKAYLLPGMDKWGG------------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccc------cccC---cCCCccCCcCCCCC------------ccCCCCCc
Confidence 89999999999999999999643210 000 0000 00011111111111 11346789
Q ss_pred CCCccchhhccccCCCCCCCccCCc-CCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHH-------HHHHH-
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGF-AEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLA-------AIDDA- 292 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~-~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~-------ai~~a- 292 (777)
.||||||||||||......+.+ ++ ....+.||||+|+|+.+|++... + .+....+.. +++|+
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~-~~~~~~g~~GVAP~A~l~~vkvl~~~--~------~~~~~~~~~g~~~~~~~~~~~~ 126 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLY-GYTGKFLIRGIAPDAKIAAVKALWFG--D------VIYAWLWTAGFDPVDRKLSWIY 126 (311)
T ss_pred cccchhHHHHHhccCccccccc-ccccccceeeeCCCCEEEEEEEEecC--C------cchhhhhhhccchhhhhhhhhh
Confidence 9999999999999853222111 11 12357899999999999999754 2 122222332 34443
Q ss_pred -HhCCceEEEeecCCCCCC----CCCccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCCcC--CCcceeeeccCcccccc
Q 004047 293 -IRDGVHVLSISIGTNQPF----AFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDF 364 (777)
Q Consensus 293 -~~~gvdVIn~SlG~~~~~----~~~~~~~~~a~~~-a~~~Gi~vV~aAGN~G~~~~~~~~--~ap~vitVgAs~~~~~~ 364 (777)
.+++++|||||||..... ....+..+...+. +.++|+++|+||||+|+...+... .++++|+|||++.....
T Consensus 127 ~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~ 206 (311)
T cd07497 127 TGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYR 206 (311)
T ss_pred ccCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCccc
Confidence 368999999999983221 1112233333333 248999999999999987555554 45899999997642211
Q ss_pred ccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhh
Q 004047 365 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 444 (777)
Q Consensus 365 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~ 444 (777)
+... +.
T Consensus 207 ~~~~-----------------------~~--------------------------------------------------- 212 (311)
T cd07497 207 PFYL-----------------------FG--------------------------------------------------- 212 (311)
T ss_pred chhh-----------------------hc---------------------------------------------------
Confidence 0000 00
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004047 445 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 524 (777)
Q Consensus 445 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d 524 (777)
......+.++.||||||+. +
T Consensus 213 ----------------------------------------------------------~~~~~~~~~~~fSs~Gp~~--~ 232 (311)
T cd07497 213 ----------------------------------------------------------YLPGGSGDVVSWSSRGPSI--A 232 (311)
T ss_pred ----------------------------------------------------------cccCCCCCccccccCCCCc--c
Confidence 0001245789999999988 5
Q ss_pred CCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCC------CCCHHHHHHHHHh
Q 004047 525 YILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP------DWSSAAIRSALMT 598 (777)
Q Consensus 525 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~~s~~~ik~~L~~ 598 (777)
+++||||+|||++|+++.+....... ......|..|+|||||||||||++|||+|++| .++|++||++|++
T Consensus 233 g~~kPdv~ApG~~i~s~~~~~~~~~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~ 309 (311)
T cd07497 233 GDPKPDLAAIGAFAWAPGRVLDSGGA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMS 309 (311)
T ss_pred cCCCCceeccCcceEeecccCCCCcc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHh
Confidence 99999999999999999875322000 11124799999999999999999999999986 6899999999999
Q ss_pred cc
Q 004047 599 TA 600 (777)
Q Consensus 599 TA 600 (777)
||
T Consensus 310 tA 311 (311)
T cd07497 310 TA 311 (311)
T ss_pred cC
Confidence 97
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=422.36 Aligned_cols=315 Identities=29% Similarity=0.371 Sum_probs=234.6
Q ss_pred cccccC-CCCceEEEEeecCCCCCCCCCCCCCCCCCCC-----CcccceecCCccccccccceeeeeeecccccccccCC
Q 004047 135 LLSKAR-YGQDVIVGLVDNGVWPESKSFSDEGMGPVPK-----SWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP 208 (777)
Q Consensus 135 ~~~~g~-~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~ 208 (777)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++.+++|.+...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----- 73 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNND----- 73 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCC-----
Confidence 688877 9999999999999999999998654322111 111111111 12245677888888876521
Q ss_pred CCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHH
Q 004047 209 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288 (777)
Q Consensus 209 ~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~a 288 (777)
+.....|..+|||||||||+|...+.. ....+.||||+|+|+.+|++.....+ .+....+++|
T Consensus 74 -----~~~~~~~~~~HGT~vagiiag~~~~~~------~~~~~~GiAp~a~l~~~~v~~~~~~~------~~~~~~~~~a 136 (346)
T cd07475 74 -----DILDEDDGSSHGMHVAGIVAGNGDEED------NGEGIKGVAPEAQLLAMKVFSNPEGG------STYDDAYAKA 136 (346)
T ss_pred -----ccCCCCCCCCcHHHHHHHHhcCCCccc------cCCceEEeCCCCeEEEEEeecCCCCC------CCCHHHHHHH
Confidence 111245788999999999999843211 12356899999999999999741113 4788899999
Q ss_pred HHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc----------------CCCcce
Q 004047 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS----------------NLAPWL 352 (777)
Q Consensus 289 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~----------------~~ap~v 352 (777)
++++++.|++|||||||...........+..++.++.++|++||+||||+|....... ...+++
T Consensus 137 i~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 9999999999999999995443355667788888999999999999999985532211 123556
Q ss_pred eeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCC
Q 004047 353 ITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 432 (777)
Q Consensus 353 itVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~ 432 (777)
|+||++...
T Consensus 217 i~Vga~~~~----------------------------------------------------------------------- 225 (346)
T cd07475 217 LTVASANKK----------------------------------------------------------------------- 225 (346)
T ss_pred eEEeecccc-----------------------------------------------------------------------
Confidence 666654210
Q ss_pred cchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc
Q 004047 433 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 512 (777)
Q Consensus 433 ~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 512 (777)
......+.++
T Consensus 226 ----------------------------------------------------------------------~~~~~~~~~~ 235 (346)
T cd07475 226 ----------------------------------------------------------------------VPNPNGGQMS 235 (346)
T ss_pred ----------------------------------------------------------------------cCCCCCCccC
Confidence 0011245788
Q ss_pred cccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHH----CCCCC
Q 004047 513 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWS 588 (777)
Q Consensus 513 ~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s 588 (777)
.||+|||+. +.++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|+
T Consensus 236 ~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~ 300 (346)
T cd07475 236 GFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLS 300 (346)
T ss_pred CCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999988 589999999999999999876 68999999999999999999999998 78999
Q ss_pred HHH----HHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCC
Q 004047 589 SAA----IRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 589 ~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
+.+ ||.+|++||.+.... ...+.++.+.++|+|+||+.+||+
T Consensus 301 ~~~~~~~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 301 GEELVDLVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 876 788999999853211 123466788899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=407.87 Aligned_cols=294 Identities=29% Similarity=0.332 Sum_probs=227.9
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|+.+++|+||+|||||+|||++||+|.+.-. ...++.+.++|..+.... .+...
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~---------------------~~~~~~~~~d~~~~~~~~---~~~~~ 59 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG---------------------PGCKVAGGYDFVGDDYDG---TNPPV 59 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC---------------------CCceeccccccCCccccc---ccCCC
Confidence 789999999999999999999999999975311 011233334443221100 00112
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
+...+.|..||||||||||+|...+ ..+.||||+|+|+.+|++... + ....+.++++|++|+
T Consensus 60 ~~~~~~d~~gHGT~vAgiia~~~~~----------~~~~GiAp~a~i~~~~v~~~~--~------~~~~~~~~~ai~~a~ 121 (312)
T cd07489 60 PDDDPMDCQGHGTHVAGIIAANPNA----------YGFTGVAPEATLGAYRVFGCS--G------STTEDTIIAAFLRAY 121 (312)
T ss_pred CCCCCCCCCCcHHHHHHHHhcCCCC----------CceEEECCCCEEEEEEeecCC--C------CCCHHHHHHHHHHHH
Confidence 2345677899999999999998422 245899999999999999865 4 467888999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---CcCCCcceeeeccCccccccccceEe
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVGPVVL 370 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~---~~~~ap~vitVgAs~~~~~~~~~~~~ 370 (777)
+++++|||||||... .+..+.+...+.++.++|+++|+||||+|..... .+...+++|+||+++
T Consensus 122 ~~~~~iIn~S~g~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------- 188 (312)
T cd07489 122 EDGADVITASLGGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------- 188 (312)
T ss_pred hcCCCEEEeCCCcCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------
Confidence 999999999999832 3445777778888999999999999999865322 223457888888621
Q ss_pred CCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEE
Q 004047 371 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 450 (777)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gv 450 (777)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCc
Q 004047 451 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 530 (777)
Q Consensus 451 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPD 530 (777)
+.||+|||+. +...|||
T Consensus 189 -------------------------------------------------------------~~~s~~g~~~--~~~~kpd 205 (312)
T cd07489 189 -------------------------------------------------------------SYFSSWGPTN--ELYLKPD 205 (312)
T ss_pred -------------------------------------------------------------CCccCCCCCC--CCCcCcc
Confidence 4789999987 4889999
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHC-CCCCHHHHHHHHHhcccccCCCCCc
Q 004047 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-PDWSSAAIRSALMTTAWMKNNKALP 609 (777)
Q Consensus 531 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~~s~~~ik~~L~~TA~~~~~~g~~ 609 (777)
|+|||++|+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..
T Consensus 206 v~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~ 274 (312)
T cd07489 206 VAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGT 274 (312)
T ss_pred EEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCC
Confidence 9999999999988732 359999999999999999999999999 9999999999999999987653211
Q ss_pred ccCCCCCCCCCCceeeeccCccccCCCCc
Q 004047 610 ITNADGSIATPFSFGSGHFRPTKAADPGL 638 (777)
Q Consensus 610 ~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 638 (777)
-. ....+++.++|+|+||+.+|++..-
T Consensus 275 ~~--~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 275 SA--LPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred cc--ccCCCCHhhcCcceeeHHHHhcCCc
Confidence 00 0114677899999999999999533
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=392.77 Aligned_cols=250 Identities=27% Similarity=0.304 Sum_probs=203.7
Q ss_pred cccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCC
Q 004047 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (777)
Q Consensus 135 ~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 214 (777)
+|..+++|+||+|||||+|||++||+|++..+.+. ..+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc-------------c
Confidence 79999999999999999999999999975421100 00000 0
Q ss_pred CCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004047 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (777)
Q Consensus 215 ~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 294 (777)
.....|..+|||||||||+|+.. ..+.||||+|+|+.+|++.....+ ++..++++||+||++
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~-----------~~~~GvAp~a~i~~~~v~~~~~~~-------~~~~~i~~ai~~a~~ 104 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPC-----------SSVEGIAPLCRGLNIPIFAEDRRG-------CSQLDLARAINLALE 104 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCC-----------CCceeECcCCeEEEEEEEeCCCCC-------CCHHHHHHHHHHHHH
Confidence 12345678999999999998731 135799999999999999876322 457899999999999
Q ss_pred CCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCc
Q 004047 295 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGM 374 (777)
Q Consensus 295 ~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~ 374 (777)
.|++|||||||...........+..+++.+.++|++||+||||+|.....++...|++|+|||++.
T Consensus 105 ~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------- 170 (267)
T cd07476 105 QGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD-------------- 170 (267)
T ss_pred CCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC--------------
Confidence 999999999998433334456678888899999999999999999776666666799999998542
Q ss_pred EEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEec
Q 004047 375 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 454 (777)
Q Consensus 375 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 454 (777)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeC
Q 004047 455 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 534 (777)
Q Consensus 455 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~AP 534 (777)
.+.++.||+||+.. .||||+||
T Consensus 171 -----------------------------------------------------~~~~~~~s~~g~~~-----~~~~l~Ap 192 (267)
T cd07476 171 -----------------------------------------------------DGLPLKFSNWGADY-----RKKGILAP 192 (267)
T ss_pred -----------------------------------------------------CCCeeeecCCCCCC-----CCceEEec
Confidence 13567899999853 38899999
Q ss_pred CCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC----CCHHHHHHHHHhcccccCCC
Q 004047 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD----WSSAAIRSALMTTAWMKNNK 606 (777)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----~s~~~ik~~L~~TA~~~~~~ 606 (777)
|.+|+++.+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 193 G~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 193 GENILGAALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred CCCceeecCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 9999999887 68999999999999999999999999887 89999999999999998643
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=391.80 Aligned_cols=290 Identities=37% Similarity=0.513 Sum_probs=217.9
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCC-CC-CCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP-LN-ATEDDRSPR 219 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~-~~-~~~~~~~~~ 219 (777)
|+||+|||||+|||++||+|.+.. ..+.+++..++|.......... .. .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997531 1233455555554321111000 00 000112345
Q ss_pred CCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceE
Q 004047 220 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 299 (777)
Q Consensus 220 D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdV 299 (777)
|..+|||||||+|+|...+ ...+.|+||+|+|+.+|++... + .+...++++||+|+++++++|
T Consensus 60 ~~~~HGT~vAgiiag~~~n---------~~~~~Giap~a~i~~~~~~~~~--~------~~~~~~~~~ai~~a~~~~~~I 122 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN---------VGTIKGVAPKADLYAYKVLGPG--G------SGTTDVIIAAIEQAVDDGMDV 122 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc---------cCceEeECCCCeEEEEEeecCC--C------CCCHHHHHHHHHHHHHcCCCE
Confidence 6899999999999988422 3346799999999999999854 3 478899999999999999999
Q ss_pred EEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc--CCCcceeeeccCccccccccceEeCCCcEEE
Q 004047 300 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS--NLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377 (777)
Q Consensus 300 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~--~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~ 377 (777)
||||||... ....+.+..+++++.++|+++|+||||+|....... ...+++|+||++....
T Consensus 123 in~S~g~~~--~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------- 185 (295)
T cd07474 123 INLSLGSSV--NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------- 185 (295)
T ss_pred EEeCCCCCC--CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC---------------
Confidence 999999832 224567788889999999999999999987655543 3458999999854110
Q ss_pred eeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCC
Q 004047 378 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 457 (777)
Q Consensus 378 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~ 457 (777)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCC-CCCCCCCCcCCceeeCCC
Q 004047 458 NGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRG-PNALDPYILKPDITAPGL 536 (777)
Q Consensus 458 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G-p~~~~d~~~KPDI~APG~ 536 (777)
.........|+++| ++. +..+||||+|||.
T Consensus 186 -----------------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~ 216 (295)
T cd07474 186 -----------------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGV 216 (295)
T ss_pred -----------------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcC
Confidence 00012344455554 444 5889999999999
Q ss_pred cEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCC
Q 004047 537 NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGS 616 (777)
Q Consensus 537 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 616 (777)
+|+++++... ..|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. .
T Consensus 217 ~i~~~~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~ 278 (295)
T cd07474 217 DIMSTAPGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------V 278 (295)
T ss_pred ceEeeccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------C
Confidence 9999987631 578999999999999999999999999999999999999999998865421 2
Q ss_pred CCCCCceeeeccCcccc
Q 004047 617 IATPFSFGSGHFRPTKA 633 (777)
Q Consensus 617 ~~~~~~~G~G~vn~~~A 633 (777)
.+++..+|+|+||+.+|
T Consensus 279 ~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 279 VYPVSRQGAGRVDALRA 295 (295)
T ss_pred cCChhccCcceeccccC
Confidence 23567899999999887
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=389.81 Aligned_cols=267 Identities=24% Similarity=0.341 Sum_probs=188.9
Q ss_pred CceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceec-CCccccccccc--eeeeeeecccccccc----cCCCC-----
Q 004047 143 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQT-GVAFNSSLCNK--KIIGARYYLKGFEQL----YGPLN----- 210 (777)
Q Consensus 143 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~-g~~f~~~~~n~--kiig~~~~~~~~~~~----~~~~~----- 210 (777)
|+|+|||||||||++||+|++. .|....+. +.+.+. ..|. .-+++++|...+... ..+.+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~-d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDD-DNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccC-CCCCccccccCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999864 23222111 000000 0010 113444444321100 00000
Q ss_pred -CCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHH
Q 004047 211 -ATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAI 289 (777)
Q Consensus 211 -~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai 289 (777)
...+...+.+..+|||||||||+|...+ ...+.||||+|+|+.+|++... .....++++||
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n---------~~g~~GvAp~a~i~~~k~~~~g---------~~~~~~i~~Ai 134 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDN---------GIGIDGVADNVKIMPLRIVPNG---------DERDKDIANAI 134 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCC---------CCceEEECCCCEEEEEEEecCC---------CcCHHHHHHHH
Confidence 0112234557899999999999997422 1225799999999999998643 35678899999
Q ss_pred HHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC---c--------CCCcceeeeccC
Q 004047 290 DDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL---S--------NLAPWLITVGAG 358 (777)
Q Consensus 290 ~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~---~--------~~ap~vitVgAs 358 (777)
+||++.|++|||||||... ......+..++..+.++|+++|+||||+|...... + ...+++|+|||+
T Consensus 135 ~~a~~~g~~IiN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~ 212 (291)
T cd07483 135 RYAVDNGAKVINMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGAS 212 (291)
T ss_pred HHHHHCCCcEEEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeec
Confidence 9999999999999999721 12334566777889999999999999998542211 1 123566777764
Q ss_pred ccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhh
Q 004047 359 SLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSK 438 (777)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~ 438 (777)
+...
T Consensus 213 ~~~~---------------------------------------------------------------------------- 216 (291)
T cd07483 213 SKKY---------------------------------------------------------------------------- 216 (291)
T ss_pred cccC----------------------------------------------------------------------------
Confidence 3211
Q ss_pred hHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCC
Q 004047 439 GMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRG 518 (777)
Q Consensus 439 ~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 518 (777)
....++.||++|
T Consensus 217 --------------------------------------------------------------------~~~~~~~~Sn~G 228 (291)
T cd07483 217 --------------------------------------------------------------------ENNLVANFSNYG 228 (291)
T ss_pred --------------------------------------------------------------------CcccccccCCCC
Confidence 012578899999
Q ss_pred CCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHh
Q 004047 519 PNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMT 598 (777)
Q Consensus 519 p~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~ 598 (777)
+. +|||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++
T Consensus 229 ~~-------~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ 288 (291)
T cd07483 229 KK-------NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILE 288 (291)
T ss_pred CC-------ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 74 35999999999999876 68999999999999999999999999999999999999999
Q ss_pred ccc
Q 004047 599 TAW 601 (777)
Q Consensus 599 TA~ 601 (777)
||.
T Consensus 289 ta~ 291 (291)
T cd07483 289 SGV 291 (291)
T ss_pred hCC
Confidence 984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=379.45 Aligned_cols=238 Identities=27% Similarity=0.316 Sum_probs=191.6
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCC
Q 004047 145 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (777)
Q Consensus 145 V~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 224 (777)
|+|||||||||++||+|++.. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999996431 11111111 134567899
Q ss_pred ccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeec
Q 004047 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304 (777)
Q Consensus 225 GThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 304 (777)
||||||||+|+... . .||||+|+|+.+|++.....+ ..++..++++||+||++.|++||||||
T Consensus 39 GT~vAgiia~~~~~---------~---~Gvap~a~i~~~~v~~~~~~~-----~~~~~~~i~~ai~~a~~~g~~VIn~S~ 101 (239)
T cd05561 39 GTAVASLLAGAGAQ---------R---PGLLPGADLYGADVFGRAGGG-----EGASALALARALDWLAEQGVRVVNISL 101 (239)
T ss_pred HHHHHHHHhCCCCC---------C---cccCCCCEEEEEEEecCCCCC-----CCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 99999999987311 1 599999999999999865211 136788999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeecc
Q 004047 305 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 383 (777)
Q Consensus 305 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 383 (777)
|.. ....+..++.++.++|++||+||||+|+.. ..++...+++|+|++++.
T Consensus 102 g~~-----~~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~----------------------- 153 (239)
T cd05561 102 AGP-----PNALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA----------------------- 153 (239)
T ss_pred CCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC-----------------------
Confidence 972 235677788899999999999999999653 234445688999997532
Q ss_pred CCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc
Q 004047 384 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 463 (777)
Q Consensus 384 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~ 463 (777)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEccc
Q 004047 464 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 543 (777)
Q Consensus 464 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~ 543 (777)
.+.++.||++|+.. ||.|||.+|+++.+
T Consensus 154 --------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~ 181 (239)
T cd05561 154 --------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAP 181 (239)
T ss_pred --------------------------------------------CCCccccCCCCCcc--------eEEccccceecccC
Confidence 23677899999976 99999999999876
Q ss_pred CCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCce
Q 004047 544 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSF 623 (777)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 623 (777)
. +.|..++|||||||||||++|||+|++| +++++||++|++||+++... ..+..|
T Consensus 182 ~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-----------~~d~~~ 236 (239)
T cd05561 182 G-------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP-----------GRDPVF 236 (239)
T ss_pred C-------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-----------CcCCCc
Confidence 6 6899999999999999999999999999 99999999999999987543 356678
Q ss_pred eee
Q 004047 624 GSG 626 (777)
Q Consensus 624 G~G 626 (777)
|||
T Consensus 237 G~G 239 (239)
T cd05561 237 GYG 239 (239)
T ss_pred CCC
Confidence 987
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=391.97 Aligned_cols=223 Identities=26% Similarity=0.276 Sum_probs=167.2
Q ss_pred CCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCce
Q 004047 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 298 (777)
Q Consensus 219 ~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvd 298 (777)
.|+.+|||||||||||+.. ....+.||||+|+|+++|+++... + ..+....+++||++|++.|++
T Consensus 182 ~d~~gHGThVAGIIAg~~~---------~~~~~~GVAP~A~I~svkv~d~~~-g-----s~~t~~~l~~ai~~ai~~gad 246 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFP---------EEPERNGVAPGAQIVSIKIGDTRL-G-----SMETGTALVRAMIAAIETKCD 246 (412)
T ss_pred CCCCCCHHHHHHHHhCCCC---------CCCceEEecCCCeEEEEEeccCCC-C-----CccchHHHHHHHHHHHHcCCC
Confidence 4778999999999999832 223467999999999999986542 2 013446799999999999999
Q ss_pred EEEeecCCCCCCCCCccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCCcCC---CcceeeeccCccccccccceEeCCCc
Q 004047 299 VLSISIGTNQPFAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDFVGPVVLGTGM 374 (777)
Q Consensus 299 VIn~SlG~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~aAGN~G~~~~~~~~~---ap~vitVgAs~~~~~~~~~~~~~~~~ 374 (777)
|||||||....... ...+..++.+ +.++|+++|+||||+|+...++..+ .+++|+|||+.....+.....+
T Consensus 247 VIN~SlG~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~---- 321 (412)
T cd04857 247 LINMSYGEATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL---- 321 (412)
T ss_pred EEEecCCcCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc----
Confidence 99999998432111 1223333443 4578999999999999887776543 4799999996432211000000
Q ss_pred EEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEec
Q 004047 375 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 454 (777)
Q Consensus 375 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 454 (777)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeC
Q 004047 455 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 534 (777)
Q Consensus 455 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~AP 534 (777)
.....+.++.||||||+. |+.+||||+||
T Consensus 322 -------------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~AP 350 (412)
T cd04857 322 -------------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAP 350 (412)
T ss_pred -------------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeC
Confidence 001135789999999998 79999999999
Q ss_pred CCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHH----HCCCCCHHHHHHHHHhccccc
Q 004047 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMK 603 (777)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~ 603 (777)
|..|.++-.. . ...|..|+|||||||||||++|||++ .+|.|+|.+||++|++||+++
T Consensus 351 G~~I~s~p~~-~----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 351 GGAIASVPNW-T----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCcEEEcccC-C----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 9999885221 1 15789999999999999999999985 468999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=379.81 Aligned_cols=247 Identities=29% Similarity=0.352 Sum_probs=196.0
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
||+||||||||+++||+|....+ ..+.++.+.++|.++.. ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC------------CCCCCCCC
Confidence 79999999999999999952210 12345677777765410 11367889
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||||+|+. .+.+.||||+|+|+.+|+.....+. ......++.|++|+.+.|++|||||
T Consensus 49 HGT~vagiia~~~-----------~~~~~GvAp~a~l~~~~~~~~~~~~------~~~~~~~~~ai~~a~~~~v~VIn~S 111 (261)
T cd07493 49 HGTAVLSTMAGYT-----------PGVMVGTAPNASYYLARTEDVASET------PVEEDNWVAAAEWADSLGVDIISSS 111 (261)
T ss_pred chhhhheeeeeCC-----------CCCEEEeCCCCEEEEEEecccCCcc------cccHHHHHHHHHHHHHcCCCEEEeC
Confidence 9999999999873 1336899999999999987654222 3456779999999999999999999
Q ss_pred cCCCCCCCC-----------CccHHHHHHHHHHhCCcEEEEecCCCCCCC---CCCcCCCcceeeeccCccccccccceE
Q 004047 304 IGTNQPFAF-----------NRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSNLAPWLITVGAGSLDRDFVGPVV 369 (777)
Q Consensus 304 lG~~~~~~~-----------~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~---~~~~~~ap~vitVgAs~~~~~~~~~~~ 369 (777)
||....... ....+..+++.+.++|+++|+||||+|... ...+...+++|+|||.+.
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~--------- 182 (261)
T cd07493 112 LGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA--------- 182 (261)
T ss_pred CCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc---------
Confidence 998432111 123567788889999999999999999763 233344589999997432
Q ss_pred eCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceE
Q 004047 370 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 449 (777)
Q Consensus 370 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g 449 (777)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCC
Q 004047 450 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 529 (777)
Q Consensus 450 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KP 529 (777)
.+.++.||++||+. ++++||
T Consensus 183 ----------------------------------------------------------~~~~~~~S~~G~~~--~~~~~p 202 (261)
T cd07493 183 ----------------------------------------------------------NGNKASFSSIGPTA--DGRLKP 202 (261)
T ss_pred ----------------------------------------------------------CCCCCccCCcCCCC--CCCcCC
Confidence 23678999999987 689999
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 530 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
||+|||.+|++.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 203 di~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 203 DVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999986544 67899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=377.01 Aligned_cols=247 Identities=30% Similarity=0.365 Sum_probs=193.0
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (777)
|+||+|||||+|||++||+|.+. |.+.... .+...+.+.+ +......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d----------~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFD----------PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------Cccccccccc----------CCCCCCCCCCC
Confidence 89999999999999999999763 1110000 0000000100 00112356788
Q ss_pred CCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh-------
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR------- 294 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~------- 294 (777)
.+|||||||||+|.... +...||||+|+|+.+|++... + +...+++++++++++
T Consensus 52 ~~HGT~vagii~g~~~~----------~~~~GvAp~a~i~~~~~~~~~--~-------~~~~~~~~a~~~~~~~~~~~~~ 112 (264)
T cd07481 52 NGHGTHTMGTMVGNDGD----------GQQIGVAPGARWIACRALDRN--G-------GNDADYLRCAQWMLAPTDSAGN 112 (264)
T ss_pred CCchhhhhhheeecCCC----------CCceEECCCCeEEEEEeecCC--C-------CcHHHHHHHHHHHHhccccccc
Confidence 89999999999987321 122799999999999999875 3 678899999999975
Q ss_pred -----CCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---CcCCCcceeeeccCcccccccc
Q 004047 295 -----DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVG 366 (777)
Q Consensus 295 -----~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~---~~~~ap~vitVgAs~~~~~~~~ 366 (777)
.+++|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+||+++.
T Consensus 113 ~~~~~~~~~Iin~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------ 183 (264)
T cd07481 113 PADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------ 183 (264)
T ss_pred ccccccCCeEEEeCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------
Confidence 789999999998322 23455666778889999999999999865443 2344589999997542
Q ss_pred ceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcC
Q 004047 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (777)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~G 446 (777)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 526 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~ 526 (777)
.+.++.||++||.. .++
T Consensus 184 -------------------------------------------------------------~~~~~~~S~~g~~~--~~~ 200 (264)
T cd07481 184 -------------------------------------------------------------NDVLADFSSRGPST--YGR 200 (264)
T ss_pred -------------------------------------------------------------CCCCccccCCCCCC--CCC
Confidence 24678999999987 489
Q ss_pred cCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC--CCHHHHHHHHHhccc
Q 004047 527 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD--WSSAAIRSALMTTAW 601 (777)
Q Consensus 527 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--~s~~~ik~~L~~TA~ 601 (777)
+||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 201 ~~~dv~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 201 IKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred cCceEEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999987 68999999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=371.81 Aligned_cols=339 Identities=23% Similarity=0.326 Sum_probs=257.9
Q ss_pred ccCCcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccc------------------eEEEee---eeEeEEEE
Q 004047 20 QKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARAS------------------HLYSYK---HSINGFSA 78 (777)
Q Consensus 20 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------i~~~y~---~~~ng~s~ 78 (777)
......|||.|++.. .+.....|.++++..++.......+ +...|. .+|+|+.-
T Consensus 77 ~~~~~~YiV~f~~~~-----~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~ 151 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDA-----SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTG 151 (501)
T ss_pred cccccceEEEeCCCc-----cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccc
Confidence 345689999999655 4566677888887776543321111 223332 26888888
Q ss_pred EcCHHHHHHhhcCCCeEEEEeCCCCcccccc-----CCcccccccchhhhcc-cCccccccccccccCCCCceEEEEeec
Q 004047 79 VLTPDEAARLSELEEVVSVYPSHPEKYSLQT-----TRSWEFVGLDEVAKQN-WNHFNMGQDLLSKARYGQDVIVGLVDN 152 (777)
Q Consensus 79 ~~~~~~~~~L~~~~~V~~V~~~~~~~~~~~~-----~~s~~~~gl~~~~~~~-~~~~~~~~~~~~~g~~G~GV~VgVIDt 152 (777)
.++.+-+..+++.|-++.++++. ...... .+....|||..+.++. .........+++ -..|+||...|+||
T Consensus 152 ~ft~~~v~~i~~~p~~~~ve~~~--~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~DT 228 (501)
T KOG1153|consen 152 YFTGESVCSIRSDPLIKAVEKDS--VVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLDT 228 (501)
T ss_pred ccccceeeeeccCcceeeccccc--ccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEecc
Confidence 99999999999999999999988 655432 2223345776663322 110011113333 34899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhcc
Q 004047 153 GVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTV 232 (777)
Q Consensus 153 Gid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGii 232 (777)
||+.+||+|.++- .| |.|.. ......|++||||||||+|
T Consensus 229 GVni~H~dFegRa------~w-Ga~i~----------------------------------~~~~~~D~nGHGTH~AG~I 267 (501)
T KOG1153|consen 229 GVNIEHPDFEGRA------IW-GATIP----------------------------------PKDGDEDCNGHGTHVAGLI 267 (501)
T ss_pred cccccccccccce------ec-ccccC----------------------------------CCCcccccCCCcceeeeee
Confidence 9999999998652 23 11110 0124568999999999999
Q ss_pred ccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---------CceEEEee
Q 004047 233 AGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---------GVHVLSIS 303 (777)
Q Consensus 233 aG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---------gvdVIn~S 303 (777)
++.. .|||.+++|+++||++++ | ++..+++++++|++++. +..|.|||
T Consensus 268 ~sKt---------------~GvAK~s~lvaVKVl~~d--G------sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlS 324 (501)
T KOG1153|consen 268 GSKT---------------FGVAKNSNLVAVKVLRSD--G------SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLS 324 (501)
T ss_pred eccc---------------cccccccceEEEEEeccC--C------cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEe
Confidence 9883 499999999999999999 6 68999999999999985 57899999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc-CCCcceeeeccCccccccccceEeCCCcEEEeeeec
Q 004047 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 382 (777)
Q Consensus 304 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~-~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 382 (777)
+|+ ...-.+..|++.|.+.||.+++||||+..+.+..+ ..+..+|||||++.
T Consensus 325 lGg-----~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------------- 377 (501)
T KOG1153|consen 325 LGG-----FRSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------------- 377 (501)
T ss_pred cCC-----cccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------------
Confidence 999 34456788889999999999999999997766554 45689999999763
Q ss_pred cCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCcc
Q 004047 383 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 462 (777)
Q Consensus 383 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~ 462 (777)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcc
Q 004047 463 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 542 (777)
Q Consensus 463 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~ 542 (777)
.+.+|.||+||++. ||.|||++|+|+|
T Consensus 378 ---------------------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~ 404 (501)
T KOG1153|consen 378 ---------------------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSW 404 (501)
T ss_pred ---------------------------------------------ccchhhhcCcccee--------eeecCchhhhhhh
Confidence 35899999999999 9999999999999
Q ss_pred cCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC---------CCHHHHHHHHHhccc
Q 004047 543 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD---------WSSAAIRSALMTTAW 601 (777)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------~s~~~ik~~L~~TA~ 601 (777)
.+.. ..-.++||||||+|||||++|.++.++|. .+|.++|..+..=..
T Consensus 405 iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 405 IGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 8843 46678999999999999999999999883 378888877766544
|
|
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=371.23 Aligned_cols=258 Identities=30% Similarity=0.427 Sum_probs=203.5
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (777)
|+||+|+|||+||+++||+|.+... ..+.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~---------------------------~~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII---------------------------RFADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc---------------------------ccccccccc----------cCCCCCCCC
Confidence 8999999999999999999975421 000111000 012356677
Q ss_pred CCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC----Cc
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----GV 297 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~----gv 297 (777)
.+|||||||+|+|...+. .+.+.||||+|+|+.+|+++.. + ....+++++||+|+++. ++
T Consensus 44 ~~HGT~vAgiiag~~~~~--------~~~~~Giap~a~i~~~~v~~~~--~------~~~~~~~~~ai~~~~~~~~~~~~ 107 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS--------NGKYKGVAPGANLVGVKVLDDS--G------SGSESDIIAGIDWVVENNEKYNI 107 (264)
T ss_pred CCchHHHHHHHhcCCccc--------CCceEEECCCCeEEEEEeecCC--C------CccHHHHHHHHHHHHhhccccCc
Confidence 899999999999984221 3346899999999999999876 4 46788999999999998 99
Q ss_pred eEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC--CcCCCcceeeeccCccccccccceEeCCCcE
Q 004047 298 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--LSNLAPWLITVGAGSLDRDFVGPVVLGTGME 375 (777)
Q Consensus 298 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~--~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~ 375 (777)
+|||||||.........+.+..+++++.++|++||+||||++..... .+...+++|+|||++.+..
T Consensus 108 ~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------ 175 (264)
T cd07487 108 RVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------ 175 (264)
T ss_pred eEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------
Confidence 99999999854435567888889999999999999999999977653 3344689999998653220
Q ss_pred EEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecC
Q 004047 376 IIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS 455 (777)
Q Consensus 376 ~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~ 455 (777)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCC
Q 004047 456 PANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPG 535 (777)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG 535 (777)
....++.||++||+. ++++||||+|||
T Consensus 176 ---------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG 202 (264)
T cd07487 176 ---------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPG 202 (264)
T ss_pred ---------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccc
Confidence 012578999999987 599999999999
Q ss_pred CcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 536 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 536 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
.+|+++.+.... ......+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 203 ~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 203 ENIVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cceEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999998654210 01112367899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=371.68 Aligned_cols=264 Identities=27% Similarity=0.308 Sum_probs=198.7
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.+.... ..+ ..+...+..... ...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~------------~~~~~~~~~~~~---~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGY------------DPAVNGYNFVPN---VGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCc------------ccccCCcccccc---cCC
Confidence 3799999999999999999999999999865110 000 000000000000 001
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
......|..||||||||||+|+..+... .++.. .+.|+||+|+|+.+|++... + .+..+.++++|+|++
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~-~g~i~--~~~gvap~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 121 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGG-VGGIA--GAGGVAPGVKIMSIQIFAGR--Y------YVGDDAVAAAIVYAA 121 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcc-eeccc--cccccCCCCEEEEEEEECCC--C------CccHHHHHHHHHHHH
Confidence 1224567889999999999987432111 11111 23569999999999999876 3 478889999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCCcCCCcceeeeccCcccccccc
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-------NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVG 366 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~ 366 (777)
+.|++|||||||... ...+...+..++..+.++ |++||+||||++......+...+++|+|++++.
T Consensus 122 ~~g~~Vin~S~g~~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 122 DNGAVILQNSWGGTG-GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred HcCCcEEEecCCCCC-ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999999999832 223455667777888888 999999999999776665566689999998542
Q ss_pred ceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcC
Q 004047 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (777)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~G 446 (777)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 526 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~ 526 (777)
.+.++.||++|+..
T Consensus 195 -------------------------------------------------------------~~~~~~~S~~g~~~----- 208 (273)
T cd07485 195 -------------------------------------------------------------NDNKASFSNYGRWV----- 208 (273)
T ss_pred -------------------------------------------------------------CCCcCccccCCCce-----
Confidence 23667999999976
Q ss_pred cCCceeeCCC-cEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC-CCHHHHHHHHHhc
Q 004047 527 LKPDITAPGL-NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD-WSSAAIRSALMTT 599 (777)
Q Consensus 527 ~KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-~s~~~ik~~L~~T 599 (777)
||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 209 ---~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 ---DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 99998775321 11257999999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=363.07 Aligned_cols=233 Identities=31% Similarity=0.423 Sum_probs=193.7
Q ss_pred cccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCC
Q 004047 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (777)
Q Consensus 135 ~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 214 (777)
.|..+++|+||+|||||+||+++||+|.++ +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 777899999999999999999999999743 1122222221
Q ss_pred CCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004047 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (777)
Q Consensus 215 ~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 294 (777)
....|..+|||||||||+|+. .||||+|+|+.+|+++.. + ....+.++++++|+++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~---------------~GvAp~a~i~~~~i~~~~--~------~~~~~~~~~ai~~~~~ 112 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT---------------YGVAKKANLVAVKVLDCN--G------SGTLSGIIAGLEWVAN 112 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc---------------cCcCCCCeEEEEEEeCCC--C------CcCHHHHHHHHHHHHh
Confidence 125678899999999999862 499999999999999876 4 4678899999999998
Q ss_pred C-----CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCcCCCcceeeeccCccccccccce
Q 004047 295 D-----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPV 368 (777)
Q Consensus 295 ~-----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~-~~~~~ap~vitVgAs~~~~~~~~~~ 368 (777)
. +++|||||||... ...+..++.++.++|+++|+||||+|.... ..+...+++|+||+++.
T Consensus 113 ~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~-------- 179 (255)
T cd04077 113 DATKRGKPAVANMSLGGGA-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS-------- 179 (255)
T ss_pred cccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC--------
Confidence 7 5899999999832 456777788899999999999999997653 33445689999998642
Q ss_pred EeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCce
Q 004047 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (777)
Q Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~ 448 (777)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcC
Q 004047 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (777)
Q Consensus 449 gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~K 528 (777)
.+.++.||++||..
T Consensus 180 -----------------------------------------------------------~~~~~~~S~~g~~~------- 193 (255)
T cd04077 180 -----------------------------------------------------------DDARASFSNYGSCV------- 193 (255)
T ss_pred -----------------------------------------------------------CCCccCcccCCCCC-------
Confidence 23578899999986
Q ss_pred CceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccc
Q 004047 529 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWM 602 (777)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~ 602 (777)
||+|||.+|.++..... +.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 194 -~i~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 194 -DIFAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred -cEEeCCCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999887421 689999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=372.56 Aligned_cols=268 Identities=24% Similarity=0.187 Sum_probs=186.9
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCc
Q 004047 146 IVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHG 225 (777)
Q Consensus 146 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 225 (777)
+|||||||||.+||+|.+.- .....+... .....|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCCh
Confidence 79999999999999996421 111111110 01156899999
Q ss_pred cchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---CceEEEe
Q 004047 226 THTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---GVHVLSI 302 (777)
Q Consensus 226 ThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~ 302 (777)
|||||||++.... .....|+||+|+|+.+|++..... .+.....+++++||+|+++. +++||||
T Consensus 42 T~vAgiia~~~~~---------~~~~~gvap~~~l~~~kv~~~~g~----~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~ 108 (291)
T cd04847 42 TAVAGLALYGDLT---------LPGNGLPRPGCRLESVRVLPPNGE----NDPELYGDITLRAIRRAVIQNPDIVRVFNL 108 (291)
T ss_pred HHHHHHHHcCccc---------CCCCCCcccceEEEEEEEcCCCCC----CCccChHHHHHHHHHHHHHhCCCceeEEEE
Confidence 9999999975321 223469999999999999987620 01135778899999999985 3599999
Q ss_pred ecCCCCCCCCC-ccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCC------------cCCCcceeeeccCccccccccce
Q 004047 303 SIGTNQPFAFN-RDGIAIGALN-AVKHNILVACSAGNSGPAPSSL------------SNLAPWLITVGAGSLDRDFVGPV 368 (777)
Q Consensus 303 SlG~~~~~~~~-~~~~~~a~~~-a~~~Gi~vV~aAGN~G~~~~~~------------~~~ap~vitVgAs~~~~~~~~~~ 368 (777)
|||........ ...+..++++ +.++|++||+||||+|...... +..++++|+|||++.+.......
T Consensus 109 SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 109 SLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred ecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 99994332211 1244445543 5689999999999999775432 22347999999976543210000
Q ss_pred EeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCce
Q 004047 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (777)
Q Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~ 448 (777)
..
T Consensus 189 ~~------------------------------------------------------------------------------ 190 (291)
T cd04847 189 RY------------------------------------------------------------------------------ 190 (291)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcC
Q 004047 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (777)
Q Consensus 449 gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~K 528 (777)
+.......+.||+|||.. ++.+|
T Consensus 191 -------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~K 213 (291)
T cd04847 191 -------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIK 213 (291)
T ss_pred -------------------------------------------------------cccccccCCCccccCCCC--CCCcC
Confidence 000011233499999998 69999
Q ss_pred CceeeCCCcEEEcccCCCCC-----CcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 529 PDITAPGLNILAAWSEASSP-----SKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
|||+|||++|.++.+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999865431100 00001112368999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=360.24 Aligned_cols=240 Identities=30% Similarity=0.371 Sum_probs=199.8
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+ +|+||+|||||+||+++||+|... ++...+++.+.
T Consensus 20 ~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~------------ 60 (260)
T cd07484 20 KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN------------ 60 (260)
T ss_pred HHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC------------
Confidence 788888 999999999999999999998422 12222333221
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..+|||||||||++...+ ...+.|+||+|+|+.+|+++.. + .+...+++++|++++
T Consensus 61 -~~~~~d~~~HGT~vagii~~~~~~---------~~~~~Giap~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 122 (260)
T cd07484 61 -DSDAMDDNGHGTHVAGIIAAATNN---------GTGVAGVAPKAKIMPVKVLDAN--G------SGSLADIANGIRYAA 122 (260)
T ss_pred -CCCCCCCCCcHHHHHHHHhCccCC---------CCceEeECCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHH
Confidence 123567889999999999987322 2235799999999999999876 3 467889999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCC
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
+.+++|||||||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.
T Consensus 123 ~~~~~iin~S~g~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------- 185 (260)
T cd07484 123 DKGAKVINLSLGGGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------- 185 (260)
T ss_pred HCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------
Confidence 999999999999832 445677777888999999999999999887777777899999997542
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceee
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 533 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~A 533 (777)
.+.++.||++|+.. |++|
T Consensus 186 ------------------------------------------------------~~~~~~~s~~g~~~--------~~~a 203 (260)
T cd07484 186 ------------------------------------------------------DDKRASFSNYGKWV--------DVSA 203 (260)
T ss_pred ------------------------------------------------------CCCcCCcCCCCCCc--------eEEe
Confidence 23667899999876 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccccc
Q 004047 534 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMK 603 (777)
Q Consensus 534 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~ 603 (777)
||.+|+++.+. +.|..++|||||||+|||++||++|++| +++++||++|++||+++
T Consensus 204 pG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 204 PGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999998876 6899999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=358.36 Aligned_cols=253 Identities=29% Similarity=0.334 Sum_probs=186.4
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
||+|||||+|||++||+|.+. +...+.|.... ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999753 11112222110 011234567889
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||||+|+.. ++...||||+|+|+.+|++... + +..++++++|+|+++.+++|||||
T Consensus 45 HGT~vAgiia~~~~----------~~~~~GvAp~a~i~~~~v~~~~--~-------~~~~~~~~ai~~a~~~~~~Vin~S 105 (254)
T cd07490 45 HGTHVSGTIGGGGA----------KGVYIGVAPEADLLHGKVLDDG--G-------GSLSQIIAGMEWAVEKDADVVSMS 105 (254)
T ss_pred cHHHHHHHHhcCCC----------CCCEEEECCCCEEEEEEEecCC--C-------CcHHHHHHHHHHHHhCCCCEEEEC
Confidence 99999999999842 2345799999999999999875 3 678999999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeec
Q 004047 304 IGTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 382 (777)
Q Consensus 304 lG~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 382 (777)
||..... .+.+..+++.+.+ +|++||+||||+|......+...+++|+|||++.+.........
T Consensus 106 ~g~~~~~---~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------ 170 (254)
T cd07490 106 LGGTYYS---EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------ 170 (254)
T ss_pred CCcCCCC---CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------
Confidence 9983321 5566655555554 69999999999997755555667999999997643210000000
Q ss_pred cCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCcc
Q 004047 383 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 462 (777)
Q Consensus 383 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~ 462 (777)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcc
Q 004047 463 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 542 (777)
Q Consensus 463 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~ 542 (777)
.......++.+|... +...||||.|||.+|+++.
T Consensus 171 ---------------------------------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~ 204 (254)
T cd07490 171 ---------------------------------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSAR 204 (254)
T ss_pred ---------------------------------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccc
Confidence 001222233444432 4678999999999999965
Q ss_pred cCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 543 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
.... ..+.|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 205 ~~~~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 205 QGAN---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred cCCC---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 3211 1268999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=363.00 Aligned_cols=207 Identities=26% Similarity=0.323 Sum_probs=165.5
Q ss_pred CCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH---
Q 004047 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI--- 293 (777)
Q Consensus 217 ~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~--- 293 (777)
...+..+|||||||||+|...+ ...+.||||+|+|+.+|+++.. + ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~---------~~~~~GvAp~a~i~~~~v~~~~--~-------~~~~~i~~a~~~a~~~~ 127 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN---------GVGVAGVAWGARILPVRVLGKC--G-------GTLSDIVDGMRWAAGLP 127 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC---------CCCceeecCCCeEEEEEEecCC--C-------CcHHHHHHHHHHHhccC
Confidence 3456789999999999998432 2235799999999999999876 4 57889999999998
Q ss_pred -------hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCcCCCcceeeeccCccccccc
Q 004047 294 -------RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFV 365 (777)
Q Consensus 294 -------~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~ 365 (777)
.++++|||||||.... ....+..++..+.++|++||+||||+|... ...+...+++|+||+++.
T Consensus 128 ~~~~~~~~~~~~Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----- 199 (285)
T cd07496 128 VPGVPVNPNPAKVINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL----- 199 (285)
T ss_pred cCCCcccCCCCeEEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-----
Confidence 4578999999998322 145677788899999999999999999765 344455689999998542
Q ss_pred cceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhc
Q 004047 366 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRA 445 (777)
Q Consensus 366 ~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~ 445 (777)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCC
Q 004047 446 GGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPY 525 (777)
Q Consensus 446 Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~ 525 (777)
.+.++.||++|+..
T Consensus 200 --------------------------------------------------------------~~~~~~~S~~g~~v---- 213 (285)
T cd07496 200 --------------------------------------------------------------RGQRASYSNYGPAV---- 213 (285)
T ss_pred --------------------------------------------------------------CCCcccccCCCCCC----
Confidence 24678999999976
Q ss_pred CcCCceeeCCCcEEEcccCCCCCC--cccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhc
Q 004047 526 ILKPDITAPGLNILAAWSEASSPS--KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (777)
Q Consensus 526 ~~KPDI~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 599 (777)
||+|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 214 ----di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 214 ----DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ----CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999998876532110 00111123578999999999999999999999999999999999999876
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=362.34 Aligned_cols=251 Identities=25% Similarity=0.299 Sum_probs=181.5
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
++|+.+++|+||+||||||||+..|| |...++ .+.. .+..+
T Consensus 12 ~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~~-------------------~~~~~------------ 52 (298)
T cd07494 12 RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVRV-------------------VLAPG------------ 52 (298)
T ss_pred HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------ccee-------------------ecCCC------------
Confidence 89999999999999999999999888 754321 0100 00000
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+.+++||+||+
T Consensus 53 ~~~~~~D~~gHGT~vag~i-------------------~GvAP~a~i~~vkv~~~------------~~~~~~~ai~~a~ 101 (298)
T cd07494 53 ATDPACDENGHGTGESANL-------------------FAIAPGAQFIGVKLGGP------------DLVNSVGAFKKAI 101 (298)
T ss_pred CCCCCCCCCCcchheeece-------------------eEeCCCCeEEEEEccCC------------CcHHHHHHHHHHH
Confidence 1123567889999999875 39999999999999763 3467899999999
Q ss_pred hCCceEEEeecCCCCCCC---------CCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCcccccc
Q 004047 294 RDGVHVLSISIGTNQPFA---------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDF 364 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~---------~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~ 364 (777)
+.+++|||||||...... .....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..-
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g 178 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG 178 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC
Confidence 999999999999842211 11345777888899999999999999974 346667999999986432200
Q ss_pred ccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhh
Q 004047 365 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 444 (777)
Q Consensus 365 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~ 444 (777)
..
T Consensus 179 ---------~~--------------------------------------------------------------------- 180 (298)
T cd07494 179 ---------AR--------------------------------------------------------------------- 180 (298)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004047 445 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 524 (777)
Q Consensus 445 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d 524 (777)
......+.|+|. ..+
T Consensus 181 -------------------------------------------------------------~~~~~~~~~~s~----~~~ 195 (298)
T cd07494 181 -------------------------------------------------------------RASSYASGFRSK----IYP 195 (298)
T ss_pred -------------------------------------------------------------cccccccCcccc----cCC
Confidence 000001112221 124
Q ss_pred CCcCCce----------------eeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCC
Q 004047 525 YILKPDI----------------TAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 588 (777)
Q Consensus 525 ~~~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 588 (777)
++.|||+ +|||..|.++...... .....+.|..++|||||||||||++|||+|++|.|+
T Consensus 196 g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~ 270 (298)
T cd07494 196 GRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLS 270 (298)
T ss_pred CCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCC
Confidence 6777887 4799999766532100 011126799999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCC
Q 004047 589 SAAIRSALMTTAWMKNN 605 (777)
Q Consensus 589 ~~~ik~~L~~TA~~~~~ 605 (777)
+++||.+|++||+++..
T Consensus 271 ~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 271 PERARSLLNKTARDVTK 287 (298)
T ss_pred HHHHHHHHHHhCcccCC
Confidence 99999999999997753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=362.53 Aligned_cols=279 Identities=30% Similarity=0.340 Sum_probs=198.3
Q ss_pred ccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCC
Q 004047 138 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 217 (777)
Q Consensus 138 ~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 217 (777)
++++|+||+|||||||||++||+|.+... .+.. ...+++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 58999999999999999999999976421 0000 12223332222211 2
Q ss_pred CCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc
Q 004047 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 297 (777)
Q Consensus 218 ~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv 297 (777)
..|..+|||||||||+|+...... ...+.||||+|+|+.+|++..... ......+..+++++.+.++
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~------~~~~~GvAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 116 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS------ISLYKGVAPKAKLYFQDIGDTSGN-------LSSPPDLNKLFSPMYDAGA 116 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc------ccccccccccCeEEEEEeeccCcc-------ccCCccHHHHHHHHHHhCC
Confidence 227899999999999998533211 114579999999999999887621 2566778999999999999
Q ss_pred eEEEeecCCCCCCCCCccHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CCcCCCcceeeeccCccccccccceEeCC
Q 004047 298 HVLSISIGTNQPFAFNRDGIAIGALNAV-K-HNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLGT 372 (777)
Q Consensus 298 dVIn~SlG~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~aAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~~ 372 (777)
+|||||||..... .......++.++. + +|+++|+||||+|.... ..+...+++|+|||++.......
T Consensus 117 ~Vin~S~G~~~~~--~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------ 188 (293)
T cd04842 117 RISSNSWGSPVNN--GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------ 188 (293)
T ss_pred EEEeccCCCCCcc--ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc------
Confidence 9999999994321 1233333444333 3 79999999999997654 34455699999999765431000
Q ss_pred CcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEE
Q 004047 373 GMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLIL 452 (777)
Q Consensus 373 ~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~ 452 (777)
..|..
T Consensus 189 ------------------------------------~~~~~--------------------------------------- 193 (293)
T cd04842 189 ------------------------------------EGGLG--------------------------------------- 193 (293)
T ss_pred ------------------------------------ccccc---------------------------------------
Confidence 00000
Q ss_pred ecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCcee
Q 004047 453 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDIT 532 (777)
Q Consensus 453 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~ 532 (777)
.....+.++.||++||+. ++++||||+
T Consensus 194 ---------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ 220 (293)
T cd04842 194 ---------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLV 220 (293)
T ss_pred ---------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEE
Confidence 001135789999999987 589999999
Q ss_pred eCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHC-----C---CCCHHHHHHHHHhccc
Q 004047 533 APGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-----P---DWSSAAIRSALMTTAW 601 (777)
Q Consensus 533 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~~s~~~ik~~L~~TA~ 601 (777)
|||++|+++.+... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 221 ApG~~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 221 APGTGILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCCeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999975420 0011122678999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=353.49 Aligned_cols=241 Identities=28% Similarity=0.330 Sum_probs=189.5
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCC
Q 004047 145 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (777)
Q Consensus 145 V~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 224 (777)
|+|||||+|||++||+|++.. +++..+.+... .....|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-------------~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-------------NDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-------------CCCCCCCCCC
Confidence 789999999999999997520 11111111110 1135678999
Q ss_pred ccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeec
Q 004047 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304 (777)
Q Consensus 225 GThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 304 (777)
||||||||+|+..+ ...+.||||+|+|+.+|++... + .+...++.++++|+++.+++||||||
T Consensus 43 GT~vAgiiag~~~~---------~~~~~Gvap~a~i~~~~~~~~~--~------~~~~~~~~~ai~~a~~~~~~Vin~S~ 105 (242)
T cd07498 43 GTACAGVAAAVGNN---------GLGVAGVAPGAKLMPVRIADSL--G------YAYWSDIAQAITWAADNGADVISNSW 105 (242)
T ss_pred HHHHHHHHHhccCC---------CceeEeECCCCEEEEEEEECCC--C------CccHHHHHHHHHHHHHCCCeEEEecc
Confidence 99999999997421 2345799999999999999876 3 36889999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeecc
Q 004047 305 GTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 383 (777)
Q Consensus 305 G~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 383 (777)
|...........+..++..+.+ +|+++|+||||+|......+...+++|+||+++.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------- 162 (242)
T cd07498 106 GGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------- 162 (242)
T ss_pred CCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------
Confidence 9844333445677777788888 9999999999999776665666799999998542
Q ss_pred CCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc
Q 004047 384 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 463 (777)
Q Consensus 384 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~ 463 (777)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEccc
Q 004047 464 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 543 (777)
Q Consensus 464 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~ 543 (777)
.+.+++||+|||.. |++|||.++++...
T Consensus 163 --------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~ 190 (242)
T cd07498 163 --------------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGT 190 (242)
T ss_pred --------------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCc
Confidence 23578999999986 99999999988854
Q ss_pred CCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhc
Q 004047 544 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (777)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 599 (777)
.... ......+.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 191 ~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 191 GRGS----AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cccc----cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 3211 011122678899999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=361.84 Aligned_cols=265 Identities=26% Similarity=0.323 Sum_probs=183.7
Q ss_pred ccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCC
Q 004047 138 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 217 (777)
Q Consensus 138 ~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 217 (777)
.+++|+||+|||||+|||++||+|.+... ...+|.+. ..
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~~ 41 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------ED 41 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------CC
Confidence 47999999999999999999999975311 11122211 12
Q ss_pred CCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc
Q 004047 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 297 (777)
Q Consensus 218 ~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv 297 (777)
..|..||||||||||+|+..+ +...||||+|+|+.+|++... + ......+++||+||++.|+
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~----------~~~~GvAp~a~i~~~~~~~~~--~------~~~~~~i~~ai~~a~~~g~ 103 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP----------GPRYGVARGAEIALIGKVLGD--G------GGGDGGILAGIQWAVANGA 103 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC----------CcccccCCCCEEEEEEEEeCC--C------CCcHHHHHHHHHHHHHcCC
Confidence 567899999999999987422 234699999999999999865 2 3667779999999999999
Q ss_pred eEEEeecCCCCC--------C-CCCccHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCCcC---C--
Q 004047 298 HVLSISIGTNQP--------F-AFNRDGIAIGALNA---------------VKHNILVACSAGNSGPAPSSLSN---L-- 348 (777)
Q Consensus 298 dVIn~SlG~~~~--------~-~~~~~~~~~a~~~a---------------~~~Gi~vV~aAGN~G~~~~~~~~---~-- 348 (777)
+|||||||.... . ......+......+ .++|++||+||||+|........ +
T Consensus 104 ~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~ 183 (297)
T cd07480 104 DVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAA 183 (297)
T ss_pred CEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccc
Confidence 999999998331 0 11112232222333 68999999999999865332211 1
Q ss_pred CcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEE
Q 004047 349 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLC 428 (777)
Q Consensus 349 ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~ 428 (777)
.++++.|++...
T Consensus 184 ~~~~~~V~~V~~-------------------------------------------------------------------- 195 (297)
T cd07480 184 CPSAMGVAAVGA-------------------------------------------------------------------- 195 (297)
T ss_pred cccccEEEEECC--------------------------------------------------------------------
Confidence 123333332211
Q ss_pred ecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCC
Q 004047 429 MRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPA 508 (777)
Q Consensus 429 ~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 508 (777)
.
T Consensus 196 -------------------------------------------------------------------------------~ 196 (297)
T cd07480 196 -------------------------------------------------------------------------------L 196 (297)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCC
Q 004047 509 PFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 588 (777)
Q Consensus 509 ~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 588 (777)
+....|+++.+. ...||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.++
T Consensus 197 ~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~ 259 (297)
T cd07480 197 GRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAG 259 (297)
T ss_pred CCCCCccccCCC----CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccC
Confidence 122233333332 34578999999999999876 7899999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCcc
Q 004047 589 SAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPT 631 (777)
Q Consensus 589 ~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~ 631 (777)
+.+++.+|+......... .........++|+|++++.
T Consensus 260 ~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 260 GRALAALLQARLTAARTT------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHHHHHhhcccC------CCCCCCChhhcCCceeecC
Confidence 888887777432221000 0012235667899999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=350.69 Aligned_cols=250 Identities=28% Similarity=0.400 Sum_probs=189.7
Q ss_pred CceEEEEeecCCCCCCCCCCCCCCCCCCCCccc---ceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCC
Q 004047 143 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKG---ICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPR 219 (777)
Q Consensus 143 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g---~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (777)
+||+|||||||||++||+|.+. .|.. .+..+...+....... ...+.|. .....+.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDD-IYGWNFV-------------NNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccC-CCccccc-------------CCCCCCC
Confidence 7899999999999999999864 2221 1111110000000000 0001111 1224567
Q ss_pred CCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceE
Q 004047 220 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 299 (777)
Q Consensus 220 D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdV 299 (777)
|..+|||||||||+|... ....+.||||+|+|+.+|++... + .++..+++++|+++++.+++|
T Consensus 61 d~~~HGT~va~ii~~~~~---------~~~~~~GvAp~a~l~~~~~~~~~--~------~~~~~~~~~a~~~a~~~~~~v 123 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGN---------NGIGIAGVAWNVKIMPLKFLGAD--G------SGTTSDAIKAIDYAVDMGAKI 123 (259)
T ss_pred CCCCcHHHHHHHHHCcCC---------CCCceEEeCCCCEEEEEEEeCCC--C------CcCHHHHHHHHHHHHHCCCeE
Confidence 889999999999999742 22335799999999999999876 3 478899999999999999999
Q ss_pred EEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCcC--CCcceeeeccCccccccccceEeCCCc
Q 004047 300 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS---SLSN--LAPWLITVGAGSLDRDFVGPVVLGTGM 374 (777)
Q Consensus 300 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~---~~~~--~ap~vitVgAs~~~~~~~~~~~~~~~~ 374 (777)
||+|||... ....+..++.++.++|+++|+||||+|.... .++. ..+++|+||+.+.
T Consensus 124 in~S~G~~~----~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~-------------- 185 (259)
T cd07473 124 INNSWGGGG----PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS-------------- 185 (259)
T ss_pred EEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC--------------
Confidence 999999832 2567777888899999999999999986522 2222 2478899987542
Q ss_pred EEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEec
Q 004047 375 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 454 (777)
Q Consensus 375 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 454 (777)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeC
Q 004047 455 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 534 (777)
Q Consensus 455 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~AP 534 (777)
.+.++.||++||. +||+.||
T Consensus 186 -----------------------------------------------------~~~~~~~s~~g~~-------~~~~~ap 205 (259)
T cd07473 186 -----------------------------------------------------NDALASFSNYGKK-------TVDLAAP 205 (259)
T ss_pred -----------------------------------------------------CCCcCcccCCCCC-------CcEEEec
Confidence 2356679999985 3599999
Q ss_pred CCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
|.++++..+. +.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 206 G~~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 206 GVDILSTSPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCCeEeccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999997765 68999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=352.06 Aligned_cols=248 Identities=21% Similarity=0.172 Sum_probs=174.9
Q ss_pred cccccc-CCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCC
Q 004047 134 DLLSKA-RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 212 (777)
Q Consensus 134 ~~~~~g-~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 212 (777)
++|+.. ..|+||+|+|||+|||.+||+|.++... ...
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~------------ 43 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LIS------------ 43 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccC------------
Confidence 788874 4599999999999999999999753110 000
Q ss_pred CCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH
Q 004047 213 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA 292 (777)
Q Consensus 213 ~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a 292 (777)
...+.|+.+|||||||||+|.. +..| +.||||+|+|+.+|++. . ....+.|..|++|+
T Consensus 44 --~~~~~d~~gHGT~VAGiIaa~~---------n~~G-~~GvAp~a~l~~i~v~~-~---------~~~~~ai~~A~~~~ 101 (277)
T cd04843 44 --GLTDQADSDHGTAVLGIIVAKD---------NGIG-VTGIAHGAQAAVVSSTR-V---------SNTADAILDAADYL 101 (277)
T ss_pred --CCCCCCCCCCcchhheeeeeec---------CCCc-eeeeccCCEEEEEEecC-C---------CCHHHHHHHHHhcc
Confidence 0124578899999999999862 1112 57999999999999975 1 12333344444443
Q ss_pred HhCCceEEEeecCCCCCCC-----CCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc----------C---CCcceee
Q 004047 293 IRDGVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS----------N---LAPWLIT 354 (777)
Q Consensus 293 ~~~gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~----------~---~ap~vit 354 (777)
...++.+||||||...... .....+..++.++.++|+++|+||||++....... . ..|++|+
T Consensus 102 ~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~ 181 (277)
T cd04843 102 SPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIM 181 (277)
T ss_pred CCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEE
Confidence 3356788999999842211 12344556778889999999999999986522111 1 1256788
Q ss_pred eccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcc
Q 004047 355 VGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 434 (777)
Q Consensus 355 VgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~ 434 (777)
|||++.+.
T Consensus 182 VgA~~~~~------------------------------------------------------------------------ 189 (277)
T cd04843 182 VGAGSSTT------------------------------------------------------------------------ 189 (277)
T ss_pred EEeccCCC------------------------------------------------------------------------
Confidence 88754211
Q ss_pred hhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccc
Q 004047 435 KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANF 514 (777)
Q Consensus 435 ~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 514 (777)
...++.|
T Consensus 190 -------------------------------------------------------------------------~~~~~~f 196 (277)
T cd04843 190 -------------------------------------------------------------------------GHTRLAF 196 (277)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 1137899
Q ss_pred cCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHH----H-CCCCCH
Q 004047 515 TSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----I-HPDWSS 589 (777)
Q Consensus 515 SS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~~s~ 589 (777)
|++|+.. ||.|||++|+++.+..... ......+.|..++|||||||||||++|||++ + +|+|+|
T Consensus 197 Sn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~ 265 (277)
T cd04843 197 SNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTP 265 (277)
T ss_pred cCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCH
Confidence 9999976 9999999999998763210 0011113357899999999999999999975 3 499999
Q ss_pred HHHHHHHHhccc
Q 004047 590 AAIRSALMTTAW 601 (777)
Q Consensus 590 ~~ik~~L~~TA~ 601 (777)
+|||++|+.|+.
T Consensus 266 ~~v~~~L~~t~~ 277 (277)
T cd04843 266 IEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHhcCC
Confidence 999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=340.16 Aligned_cols=227 Identities=32% Similarity=0.475 Sum_probs=186.1
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
||+|||||+||+++||+|.+. ++..++|... . .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~-----------~-~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGD-----------D-NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCC-----------C-CCCCCCCCC
Confidence 799999999999999999743 1122222221 0 024567889
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||||++.... ..+.|+||+|+|+.+|++... + .....+++++++++++.|++|||||
T Consensus 42 HGT~vA~ii~~~~~~----------~~~~giap~a~i~~~~~~~~~--~------~~~~~~l~~ai~~a~~~~~~Vin~S 103 (229)
T cd07477 42 HGTHVAGIIAALDNG----------VGVVGVAPEADLYAVKVLNDD--G------SGTYSDIIAGIEWAIENGMDIINMS 103 (229)
T ss_pred CHHHHHHHHhcccCC----------CccEeeCCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHHHCCCCEEEEC
Confidence 999999999987421 145799999999999999876 3 3567899999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--cCCCcceeeeccCccccccccceEeCCCcEEEeeee
Q 004047 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 381 (777)
Q Consensus 304 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~--~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 381 (777)
||... ....+..++..+.++|+++|+||||++...... +...+++|+||+++.
T Consensus 104 ~g~~~----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~--------------------- 158 (229)
T cd07477 104 LGGPS----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS--------------------- 158 (229)
T ss_pred CccCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC---------------------
Confidence 99832 234566677888999999999999999776554 556789999998542
Q ss_pred ccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc
Q 004047 382 TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 461 (777)
Q Consensus 382 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~ 461 (777)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEc
Q 004047 462 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 541 (777)
Q Consensus 462 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa 541 (777)
.+.++.||++|+.. |+.|||.+|+++
T Consensus 159 ----------------------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~ 184 (229)
T cd07477 159 ----------------------------------------------NNNRASFSSTGPEV--------ELAAPGVDILST 184 (229)
T ss_pred ----------------------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEe
Confidence 23566899999965 999999999999
Q ss_pred ccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhc
Q 004047 542 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (777)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 599 (777)
++. +.|..++|||||||+|||++|||+|++|.+++.+||++|++|
T Consensus 185 ~~~-------------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 185 YPN-------------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred cCC-------------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 887 689999999999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=342.92 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=119.3
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004047 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (777)
Q Consensus 142 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (777)
+++|+|||||||||++||+|.++ ++..+.|....... ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~------~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDG------NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCc------ccCCCCCCCC
Confidence 78999999999999999999743 11222222210000 0011123578
Q ss_pred CCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEE
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 301 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 301 (777)
.||||||||||+ |+||+|+|+.+|+++....+ .....++...+++||+||+++|+||||
T Consensus 49 ~gHGT~vAgiI~-------------------gvap~a~i~~~kv~~~~~~~--~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 49 DGHGTAMARMIC-------------------RICPSAKLYVIKLEDRPSPD--SNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCcHHHHHHHHH-------------------HHCCCCeEEEEEecccCCCC--CcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 899999999995 78999999999999865211 000135678899999999999999999
Q ss_pred eecCCCCCC--CCCccHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCc--CCCcceeeeccCc
Q 004047 302 ISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLS--NLAPWLITVGAGS 359 (777)
Q Consensus 302 ~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~-~~~--~~ap~vitVgAs~ 359 (777)
||||..... ......+..++.+|.++|++||+||||+|.... .+. ...|++|+|||++
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 999983321 123567788889999999999999999997754 333 3358999999865
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=351.85 Aligned_cols=255 Identities=23% Similarity=0.240 Sum_probs=175.2
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
.|+|||||||||++||+|++.-. ...+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS--------------------------SYSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc--------------------------ccccccccCCCcCCccccccCCCCcCCCCCC
Confidence 38999999999999999985311 0000110000000000000111234567899
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||+|+|+. . ..||||+|+|+.+|+++.. + .....+++++|+||++++++|||||
T Consensus 55 HGT~vAgiia~~~--------~-----~~GvAp~a~i~~~~v~~~~--~------~~~~~~~~~ai~~a~~~~~~vin~S 113 (294)
T cd07482 55 HGTAVAGQIAANG--------N-----IKGVAPGIGIVSYRVFGSC--G------SAESSWIIKAIIDAADDGVDVINLS 113 (294)
T ss_pred cHhHHHHHHhcCC--------C-----CceeCCCCEEEEEEeecCC--C------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 9999999999862 1 2499999999999999876 3 3478899999999999999999999
Q ss_pred cCCCCCCCC-------CccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC----------------------cCCCcceee
Q 004047 304 IGTNQPFAF-------NRDGIAIGALNAVKHNILVACSAGNSGPAPSSL----------------------SNLAPWLIT 354 (777)
Q Consensus 304 lG~~~~~~~-------~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~----------------------~~~ap~vit 354 (777)
||....... ..+.+..++..+.++|++||+||||+|...... +...+++|+
T Consensus 114 ~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~ 193 (294)
T cd07482 114 LGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVIT 193 (294)
T ss_pred CccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEE
Confidence 998432111 123456667778899999999999999653111 111234444
Q ss_pred eccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcc
Q 004047 355 VGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 434 (777)
Q Consensus 355 VgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~ 434 (777)
|||++
T Consensus 194 Vga~~--------------------------------------------------------------------------- 198 (294)
T cd07482 194 VSATD--------------------------------------------------------------------------- 198 (294)
T ss_pred EEeeC---------------------------------------------------------------------------
Confidence 44432
Q ss_pred hhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccc
Q 004047 435 KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANF 514 (777)
Q Consensus 435 ~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 514 (777)
..+.++.|
T Consensus 199 ------------------------------------------------------------------------~~~~~~~~ 206 (294)
T cd07482 199 ------------------------------------------------------------------------NNGNLSSF 206 (294)
T ss_pred ------------------------------------------------------------------------CCCCcCcc
Confidence 23567789
Q ss_pred cCCCCCCCCCCCcCCceeeCCCcEEEcccCCCC---CCc------ccCCcccccceeeccccchhhHHHHHHHHHHHHCC
Q 004047 515 TSRGPNALDPYILKPDITAPGLNILAAWSEASS---PSK------LAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP 585 (777)
Q Consensus 515 SS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P 585 (777)
|++|+.. +|++|||+++....+.... ... .......+.|..++|||||||+|||++|||+|++|
T Consensus 207 S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p 279 (294)
T cd07482 207 SNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNP 279 (294)
T ss_pred ccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCC
Confidence 9998764 4999999998533221100 000 00112336899999999999999999999999999
Q ss_pred CCCH-HHHHHHHHhc
Q 004047 586 DWSS-AAIRSALMTT 599 (777)
Q Consensus 586 ~~s~-~~ik~~L~~T 599 (777)
.+++ .|||++|++|
T Consensus 280 ~~~~~~~v~~~L~~T 294 (294)
T cd07482 280 LKKPPDEAIRILYNT 294 (294)
T ss_pred CCCcHHHHHHHHhhC
Confidence 9999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=356.06 Aligned_cols=275 Identities=34% Similarity=0.442 Sum_probs=207.4
Q ss_pred EEEEeecCCCCCCCCCC-CCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCC
Q 004047 146 IVGLVDNGVWPESKSFS-DEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (777)
Q Consensus 146 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 224 (777)
+|||||||||++||+|. ++ + ...++.+.+.|.+.. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0 112333444454431 112356678899
Q ss_pred ccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-hCCceEEEee
Q 004047 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RDGVHVLSIS 303 (777)
Q Consensus 225 GThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn~S 303 (777)
||||||||+|.. . . ......|+||+|+|+.+|++... + .....++++|++++ +++++|||||
T Consensus 49 GT~va~ii~~~~-~-~------~~~~~~Gva~~a~l~~~~i~~~~--~-------~~~~~~~~ai~~~~~~~~~~Vin~S 111 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-N------NGPGINGVAPNAKLYSYKIFDNS--G-------GTSSDLIEAIEYAVKNDGVDVINLS 111 (282)
T ss_dssp HHHHHHHHHHTT-S-S------SSSSETCSSTTSEEEEEECSSTT--S-------EEHHHHHHHHHHHHHHTTSSEEEEC
T ss_pred cchhhhhccccc-c-c------ccccccccccccccccccccccc--c-------cccccccchhhhhhhccCCcccccc
Confidence 999999999985 1 1 12234799999999999997765 2 57888999999999 8999999999
Q ss_pred cCCC--CCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC-CcC--CCcceeeeccCccccccccceEeCCCcEEEe
Q 004047 304 IGTN--QPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS-LSN--LAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 378 (777)
Q Consensus 304 lG~~--~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~-~~~--~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g 378 (777)
||.. .......+.+..+.+.+.++|+++|+||||+|..... +.. ..+++|+||+++.
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------ 173 (282)
T PF00082_consen 112 FGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------ 173 (282)
T ss_dssp EEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------
T ss_pred ccccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------
Confidence 9882 1222233445666778999999999999999876553 333 3478888887432
Q ss_pred eeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCC
Q 004047 379 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458 (777)
Q Consensus 379 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~ 458 (777)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcE
Q 004047 459 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 538 (777)
Q Consensus 459 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I 538 (777)
.+.++.||++|+... ++++||||+|||.+|
T Consensus 174 -------------------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i 203 (282)
T PF00082_consen 174 -------------------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNI 203 (282)
T ss_dssp -------------------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSE
T ss_pred -------------------------------------------------ccccccccccccccc-ccccccccccccccc
Confidence 236689999976543 589999999999999
Q ss_pred EEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCC
Q 004047 539 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIA 618 (777)
Q Consensus 539 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 618 (777)
+++++.... ..|..++|||||||+|||++|||+|++|++++.+||.+|++||.+.... +...
T Consensus 204 ~~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~--------~~~~ 265 (282)
T PF00082_consen 204 LSAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST--------NGEG 265 (282)
T ss_dssp EEEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET--------TSSS
T ss_pred ccccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC--------CCCC
Confidence 998876210 3578899999999999999999999999999999999999999988721 1234
Q ss_pred CCCceeeeccCccccCC
Q 004047 619 TPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 619 ~~~~~G~G~vn~~~Al~ 635 (777)
.+..||||+||+.+|++
T Consensus 266 ~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 266 YDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHTTSBE-HHHHHH
T ss_pred CCCCccCChhCHHHHhC
Confidence 56789999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=350.04 Aligned_cols=247 Identities=20% Similarity=0.163 Sum_probs=179.9
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|+|||||||++||+|.+.... ...++|....
T Consensus 30 ~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~----------- 73 (297)
T cd04059 30 PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND----------- 73 (297)
T ss_pred HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC-----------
Confidence 8999999999999999999999999999753210 0111222110
Q ss_pred CCCCC--CCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004047 214 DDRSP--RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (777)
Q Consensus 214 ~~~~~--~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 291 (777)
....+ .|..||||||||||+|+... .....||||+|+|+.+|++... ........++.+
T Consensus 74 ~~~~~~~~~~~gHGT~vAgiiag~~~~---------~~~~~GvAp~a~l~~~~~~~~~----------~~~~~~~~~~~~ 134 (297)
T cd04059 74 PDPTPRYDDDNSHGTRCAGEIAAVGNN---------GICGVGVAPGAKLGGIRMLDGD----------VTDVVEAESLGL 134 (297)
T ss_pred CCCCCccccccccCcceeeEEEeecCC---------CcccccccccceEeEEEecCCc----------cccHHHHHHHhc
Confidence 00112 37889999999999998421 1124699999999999998754 234455666666
Q ss_pred HHhCCceEEEeecCCCCCCC---CCccHHHHHHHHHHh-----CCcEEEEecCCCCCCCCCC--c--CCCcceeeeccCc
Q 004047 292 AIRDGVHVLSISIGTNQPFA---FNRDGIAIGALNAVK-----HNILVACSAGNSGPAPSSL--S--NLAPWLITVGAGS 359 (777)
Q Consensus 292 a~~~gvdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~aAGN~G~~~~~~--~--~~ap~vitVgAs~ 359 (777)
+.+ .++|||||||...... ........++.++.+ +|++||+||||+|...... . ...|++|+|||++
T Consensus 135 ~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~ 213 (297)
T cd04059 135 NPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT 213 (297)
T ss_pred ccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC
Confidence 554 5699999999843221 122233444444443 6999999999999732221 1 2347899999754
Q ss_pred cccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhh
Q 004047 360 LDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 439 (777)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~ 439 (777)
.
T Consensus 214 ~------------------------------------------------------------------------------- 214 (297)
T cd04059 214 A------------------------------------------------------------------------------- 214 (297)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCC
Q 004047 440 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 519 (777)
Q Consensus 440 ~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 519 (777)
.+.++.||++|+
T Consensus 215 --------------------------------------------------------------------~g~~~~~s~~g~ 226 (297)
T cd04059 215 --------------------------------------------------------------------NGVRASYSEVGS 226 (297)
T ss_pred --------------------------------------------------------------------CCCCcCCCCCCC
Confidence 246779999999
Q ss_pred CCCCCCCcCCceeeCCCc-------EEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHH
Q 004047 520 NALDPYILKPDITAPGLN-------ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAI 592 (777)
Q Consensus 520 ~~~~d~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~i 592 (777)
.. ++.|||.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.+|
T Consensus 227 ~~--------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v 288 (297)
T cd04059 227 SV--------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDV 288 (297)
T ss_pred cE--------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHH
Confidence 87 89999987 777665420 146788999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 004047 593 RSALMTTAW 601 (777)
Q Consensus 593 k~~L~~TA~ 601 (777)
|++|++||+
T Consensus 289 ~~~L~~TA~ 297 (297)
T cd04059 289 QHILALTAR 297 (297)
T ss_pred HHHHHHhcC
Confidence 999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=329.36 Aligned_cols=222 Identities=21% Similarity=0.246 Sum_probs=172.5
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004047 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (777)
Q Consensus 144 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (777)
||+|||||||||++||+|.+.-. ..+.+... . ...+.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~-~-------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDL-E-------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccc-c-------cccCCCCCCCCCC
Confidence 79999999999999999975311 00111000 0 0011234567889
Q ss_pred CccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEee
Q 004047 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (777)
Q Consensus 224 HGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 303 (777)
|||||||||++ .+|+++|+.+|+++.. + .+..+.+++||+|++++|++|||||
T Consensus 46 HGT~vAgiia~-------------------~~p~~~i~~~~v~~~~--~------~~~~~~~~~ai~~a~~~~v~Vin~S 98 (222)
T cd07492 46 HGTACAGIIKK-------------------YAPEAEIGSIKILGED--G------RCNSFVLEKALRACVENDIRIVNLS 98 (222)
T ss_pred cHHHHHHHHHc-------------------cCCCCeEEEEEEeCCC--C------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 99999999975 3599999999999876 3 4788999999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeecc
Q 004047 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 383 (777)
Q Consensus 304 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 383 (777)
||... ......+..++.++.++|+++|+||||++..... +...+++|+|++.+.+.
T Consensus 99 ~G~~~--~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 99 LGGPG--DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CCCCC--CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC---------------------
Confidence 99832 2233566777888889999999999999865332 44458899998753211
Q ss_pred CCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc
Q 004047 384 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 463 (777)
Q Consensus 384 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~ 463 (777)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEccc
Q 004047 464 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 543 (777)
Q Consensus 464 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~ 543 (777)
.. +.+++ ++|+.|||.+|+++.+
T Consensus 155 ----------------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~ 177 (222)
T cd07492 155 ----------------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAP 177 (222)
T ss_pred ----------------------------------------------Cc---ccccC--------CceEEeCCCCeEeecC
Confidence 11 11233 3499999999999987
Q ss_pred CCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 544 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
. +.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 178 ~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 178 H-------------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred C-------------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7 68999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=332.16 Aligned_cols=245 Identities=31% Similarity=0.356 Sum_probs=186.3
Q ss_pred CCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCC
Q 004047 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 220 (777)
Q Consensus 141 ~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 220 (777)
+|+||+|+|||+||+++||+|.+..... ..+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------ccccccc---------cccCCCCCC
Confidence 6999999999999999999997642100 0000000 000124567
Q ss_pred CCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEE
Q 004047 221 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 300 (777)
Q Consensus 221 ~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVI 300 (777)
..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++.... .+....+.++++++++.+++||
T Consensus 45 ~~~HGT~vagiiag~~~~----------~~~~GiAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Vi 107 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG----------GGMHGVAPDATLYSARASASAGS-------TFSDADIAAAYDFLAASGVRII 107 (267)
T ss_pred CCChHHHHHHHHhcCcCC----------CCcccCCcCCEEEEEeccCCCCc-------ccchHHHHHHHHHHHhCCCeEE
Confidence 889999999999997422 34579999999999999987521 2567889999999999999999
Q ss_pred EeecCCCCCCC-----------CCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc---------CCCcceeeeccCcc
Q 004047 301 SISIGTNQPFA-----------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS---------NLAPWLITVGAGSL 360 (777)
Q Consensus 301 n~SlG~~~~~~-----------~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~---------~~ap~vitVgAs~~ 360 (777)
|||||...... ...+.+......+.++|+++|+||||++....... ...+++|+||+++.
T Consensus 108 n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~ 187 (267)
T cd04848 108 NNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDP 187 (267)
T ss_pred EccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecC
Confidence 99999843221 24556667778899999999999999986543332 23478889988653
Q ss_pred ccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhH
Q 004047 361 DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 440 (777)
Q Consensus 361 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~ 440 (777)
+.
T Consensus 188 ~~------------------------------------------------------------------------------ 189 (267)
T cd04848 188 NG------------------------------------------------------------------------------ 189 (267)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCcccc--ccCCC
Q 004047 441 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMAN--FTSRG 518 (777)
Q Consensus 441 ~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~G 518 (777)
.... ||++|
T Consensus 190 ---------------------------------------------------------------------~~~~~~~s~~~ 200 (267)
T cd04848 190 ---------------------------------------------------------------------TIASYSYSNRC 200 (267)
T ss_pred ---------------------------------------------------------------------Ccccccccccc
Confidence 2233 48888
Q ss_pred CCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHh
Q 004047 519 PNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMT 598 (777)
Q Consensus 519 p~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~ 598 (777)
+.. -.+++.|||.+|+++.+... ..|..++|||||||+|||++|||+|++|.+++++||++|++
T Consensus 201 ~~~-----~~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~ 264 (267)
T cd04848 201 GVA-----ANWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLT 264 (267)
T ss_pred hhh-----hhheeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHh
Confidence 643 23479999999999987311 67889999999999999999999999999999999999999
Q ss_pred ccc
Q 004047 599 TAW 601 (777)
Q Consensus 599 TA~ 601 (777)
||+
T Consensus 265 tA~ 267 (267)
T cd04848 265 TAT 267 (267)
T ss_pred hcC
Confidence 985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=331.03 Aligned_cols=366 Identities=24% Similarity=0.318 Sum_probs=267.9
Q ss_pred CcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhh------ccceEEEeeeeEeEEEEEcCH-----HHHHHhhcC
Q 004047 23 KQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEA------RASHLYSYKHSINGFSAVLTP-----DEAARLSEL 91 (777)
Q Consensus 23 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~i~~~y~~~~ng~s~~~~~-----~~~~~L~~~ 91 (777)
...|||+|+..-. ...++..+++.+...... +-..-..|...|.-+-++-.. -++++|+.+
T Consensus 49 e~EyIv~F~~y~~--------Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~h 120 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP--------AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMH 120 (1033)
T ss_pred cceeEEEeccccc--------chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcC
Confidence 4689999997652 235666777766533211 111233455555555554332 357999999
Q ss_pred CCeEEEEeCCCCcccccc------------CCccccc-ccch---hh----hcccC-c--------cc--cccccccccC
Q 004047 92 EEVVSVYPSHPEKYSLQT------------TRSWEFV-GLDE---VA----KQNWN-H--------FN--MGQDLLSKAR 140 (777)
Q Consensus 92 ~~V~~V~~~~~~~~~~~~------------~~s~~~~-gl~~---~~----~~~~~-~--------~~--~~~~~~~~g~ 140 (777)
|.|+.|.|.+ .+..-. +.+-.++ |... .+ ..+++ | .+ .++.+|..|+
T Consensus 121 p~vk~v~pqr--~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~Gy 198 (1033)
T KOG4266|consen 121 PDVKVVFPQR--RVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGY 198 (1033)
T ss_pred CCceeecchh--hhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccc
Confidence 9999999987 443210 0000000 0000 00 00000 0 11 2358999999
Q ss_pred CCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCC
Q 004047 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 220 (777)
Q Consensus 141 ~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 220 (777)
+|++|+|||.|||+.-+||.|+.- ....++++. ..-.|
T Consensus 199 TGa~VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD 236 (1033)
T KOG4266|consen 199 TGAKVKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDD 236 (1033)
T ss_pred cCCceEEEEeecccccCCccccch----------------------------hhhcCCcCc--------------ccccc
Confidence 999999999999999999999731 111112211 24567
Q ss_pred CCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEE
Q 004047 221 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 300 (777)
Q Consensus 221 ~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVI 300 (777)
..||||.|||+|||.. .-.|.||+++|+++|||-+.+ -...+.+++|+.||+..+.||+
T Consensus 237 ~lgHGTFVAGvia~~~-------------ec~gfa~d~e~~~frvft~~q--------VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 237 NLGHGTFVAGVIAGRN-------------ECLGFASDTEIYAFRVFTDAQ--------VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred CcccceeEeeeeccch-------------hhcccCCccceeEEEeeccce--------eehhhHHHHHHHHHHhhhcceE
Confidence 8999999999999872 236999999999999998874 3688999999999999999999
Q ss_pred EeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCC--cceeeeccCccccccccceEeCCCcEEEe
Q 004047 301 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA--PWLITVGAGSLDRDFVGPVVLGTGMEIIG 378 (777)
Q Consensus 301 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~a--p~vitVgAs~~~~~~~~~~~~~~~~~~~g 378 (777)
|+|+|++ ++.+.|+-.-+.....++|++|.|+||+||-.++..+++ ..||-||..
T Consensus 296 NLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI-------------------- 352 (1033)
T KOG4266|consen 296 NLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI-------------------- 352 (1033)
T ss_pred eeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc--------------------
Confidence 9999993 466677776677888999999999999999999998876 356666632
Q ss_pred eeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCC
Q 004047 379 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458 (777)
Q Consensus 379 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~ 458 (777)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCcCCceeeC
Q 004047 459 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKPDITAP 534 (777)
Q Consensus 459 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~d~~~KPDI~AP 534 (777)
...+.++.|||||-+.. .-||+||||++-
T Consensus 353 -----------------------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 353 -----------------------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred -----------------------------------------------cccchhhhhccCCcceeecCCcccccCCceEee
Confidence 12468999999996442 248999999999
Q ss_pred CCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHH----HCCCCCHHHHHHHHHhcccccCCCCCcc
Q 004047 535 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMKNNKALPI 610 (777)
Q Consensus 535 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~~~~g~~~ 610 (777)
|.+|...... .+...+||||.|+|+|||+++||.+ +.--+.|+.+|++|..+|.+++..
T Consensus 386 G~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---- 448 (1033)
T KOG4266|consen 386 GRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---- 448 (1033)
T ss_pred ccccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----
Confidence 9999877655 6788999999999999999999976 345578999999999999999753
Q ss_pred cCCCCCCCCCCceeeeccCccccCCC
Q 004047 611 TNADGSIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 611 ~~~~~~~~~~~~~G~G~vn~~~Al~~ 636 (777)
.-++||+|++|+.++++-
T Consensus 449 --------NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 449 --------NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred --------chhhccCcchhHHHHHHH
Confidence 457899999999988873
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=320.41 Aligned_cols=241 Identities=24% Similarity=0.260 Sum_probs=187.4
Q ss_pred CCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEE
Q 004047 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 301 (777)
Q Consensus 222 ~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 301 (777)
.-||||||||++|+..+.... .||||+|+|+++++-+..-.. .-+...+.+|+..++++++||||
T Consensus 310 g~HGTHVAgIa~anhpe~p~~---------NGvAPgaqIvSl~IGD~RLgs------METgtaltRA~~~v~e~~vDiIN 374 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPEL---------NGVAPGAQIVSLKIGDGRLGS------METGTALTRAMIEVIEHNVDIIN 374 (1304)
T ss_pred CCCcceehhhhccCCCCCccc---------cCCCCCCEEEEEEecCccccc------cccchHHHHHHHHHHHhcCCEEE
Confidence 569999999999997665433 499999999999996654211 24556799999999999999999
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCC---cceeeeccCccccccccceEeCCCcEEEe
Q 004047 302 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA---PWLITVGAGSLDRDFVGPVVLGTGMEIIG 378 (777)
Q Consensus 302 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~a---p~vitVgAs~~~~~~~~~~~~~~~~~~~g 378 (777)
||+|-+...+.....++.+-..+.++|+++|+||||+||...+++.+. ..+|.|||.....+..+...+
T Consensus 375 mSyGE~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~~-------- 446 (1304)
T KOG1114|consen 375 MSYGEDAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYSV-------- 446 (1304)
T ss_pred eccCccCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhhh--------
Confidence 999985544555556666656677889999999999999988888653 588999986433221111000
Q ss_pred eeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCC
Q 004047 379 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458 (777)
Q Consensus 379 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~ 458 (777)
T Consensus 447 -------------------------------------------------------------------------------- 446 (1304)
T KOG1114|consen 447 -------------------------------------------------------------------------------- 446 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcE
Q 004047 459 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 538 (777)
Q Consensus 459 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I 538 (777)
..+.......||||||+. ||.+--.|+|||+.|
T Consensus 447 ---------------------------------------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAi 479 (1304)
T KOG1114|consen 447 ---------------------------------------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAI 479 (1304)
T ss_pred ---------------------------------------------hccCCCCccccccCCCCc--CCCcceEEecCCccc
Confidence 001123577899999998 799999999999998
Q ss_pred EEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHH----CCCCCHHHHHHHHHhcccccCCCCCcccCCC
Q 004047 539 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWSSAAIRSALMTTAWMKNNKALPITNAD 614 (777)
Q Consensus 539 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~ 614 (777)
.+.-.-.- ..-..|+|||||+|+++|.+|||++. +-.|||..||.+|++||.++++.
T Consensus 480 AsVP~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------- 540 (1304)
T KOG1114|consen 480 ASVPQYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------- 540 (1304)
T ss_pred cCCchhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc--------
Confidence 66421110 35578999999999999999999664 56799999999999999998764
Q ss_pred CCCCCCCceeeeccCccccCC
Q 004047 615 GSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 615 ~~~~~~~~~G~G~vn~~~Al~ 635 (777)
.++.+|.|++++.+|.+
T Consensus 541 ----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 ----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ----chhccCcceeehhHHHH
Confidence 67899999999999987
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=292.00 Aligned_cols=195 Identities=24% Similarity=0.246 Sum_probs=141.5
Q ss_pred CCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH--HhC
Q 004047 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA--IRD 295 (777)
Q Consensus 218 ~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a--~~~ 295 (777)
..|+.||||||||||||. .|++|+++|+..++... ..+.+..+++|+ .+.
T Consensus 33 ~~~~~~HGThVAgiiag~----------------~~~~p~a~~~~~~~~~~------------~~~~~~~~i~~~~~~~~ 84 (247)
T cd07488 33 NNTFDDHATLVASIMGGR----------------DGGLPAVNLYSSAFGIK------------SNNGQWQECLEAQQNGN 84 (247)
T ss_pred CCCCCCHHHHHHHHHHhc----------------cCCCCccceehhhhCCC------------CCCccHHHHHHHHHhcC
Confidence 457899999999999987 26679999987665221 223356677787 667
Q ss_pred CceEEEeecCCCCCCC-----CCccHHHHHHHHHHhC-CcEEEEecCCCCCCCCC---C--cCCCcceeeeccCcccccc
Q 004047 296 GVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKH-NILVACSAGNSGPAPSS---L--SNLAPWLITVGAGSLDRDF 364 (777)
Q Consensus 296 gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~aAGN~G~~~~~---~--~~~ap~vitVgAs~~~~~~ 364 (777)
+++|||||||...... ...+.+..+++.+.++ |+++|+||||+|..... + +..++++|+|||++....
T Consensus 85 gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~- 163 (247)
T cd07488 85 NVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD- 163 (247)
T ss_pred CceEEEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-
Confidence 9999999999843322 1234566677776666 99999999999975322 2 234578999998653210
Q ss_pred ccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhh
Q 004047 365 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 444 (777)
Q Consensus 365 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~ 444 (777)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004047 445 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 524 (777)
Q Consensus 445 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d 524 (777)
....+.||++|-....+
T Consensus 164 ---------------------------------------------------------------~~~~s~~sn~~~~~~~~ 180 (247)
T cd07488 164 ---------------------------------------------------------------RFFASDVSNAGSEINSY 180 (247)
T ss_pred ---------------------------------------------------------------cceecccccccCCCCCC
Confidence 01234566654322225
Q ss_pred CCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHH------HHHHHHHh
Q 004047 525 YILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA------AIRSALMT 598 (777)
Q Consensus 525 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~------~ik~~L~~ 598 (777)
+..||||+|||++|++ +. +.|..++|||||||||||++|||++++|++.+. ++|.+|++
T Consensus 181 ~~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~ 245 (247)
T cd07488 181 GRRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSS 245 (247)
T ss_pred CCceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhc
Confidence 7899999999999998 33 578899999999999999999999999887643 56666665
Q ss_pred c
Q 004047 599 T 599 (777)
Q Consensus 599 T 599 (777)
|
T Consensus 246 ~ 246 (247)
T cd07488 246 S 246 (247)
T ss_pred c
Confidence 5
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=270.04 Aligned_cols=197 Identities=34% Similarity=0.443 Sum_probs=156.8
Q ss_pred CCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-hC
Q 004047 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RD 295 (777)
Q Consensus 217 ~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~-~~ 295 (777)
...+..+||||||++|++..... ...|+||+++|+.+|+.... + ......+++++++++ ..
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~----------~~~g~a~~a~i~~~~~~~~~--~------~~~~~~~~~ai~~~~~~~ 100 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG----------GGVGVAPGAKLIPVKVLDGD--G------SGSSSDIAAAIDYAAADQ 100 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC----------CCEEeCCCCEEEEEEEecCC--C------CcCHHHHHHHHHHHHhcc
Confidence 45578899999999999874221 12699999999999998876 3 367889999999999 89
Q ss_pred CceEEEeecCCCCCCCCCccHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CCcCCCcceeeeccCccccccccceEeC
Q 004047 296 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLG 371 (777)
Q Consensus 296 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~aAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~ 371 (777)
+++|||||||..... ....+...+..+.++ |+++|+||||.+.... ......+++|+||+++...
T Consensus 101 ~~~iin~S~g~~~~~--~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~--------- 169 (241)
T cd00306 101 GADVINLSLGGPGSP--PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG--------- 169 (241)
T ss_pred CCCEEEeCCCCCCCC--CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC---------
Confidence 999999999993221 345667777788888 9999999999997765 3555679999999865321
Q ss_pred CCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEE
Q 004047 372 TGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLI 451 (777)
Q Consensus 372 ~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi 451 (777)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc-cccCCCCCCCCCCCcCCc
Q 004047 452 LGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA-NFTSRGPNALDPYILKPD 530 (777)
Q Consensus 452 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~Gp~~~~d~~~KPD 530 (777)
... .++++|+ |||
T Consensus 170 ----------------------------------------------------------~~~~~~~~~~~--------~~~ 183 (241)
T cd00306 170 ----------------------------------------------------------TPASPSSNGGA--------GVD 183 (241)
T ss_pred ----------------------------------------------------------CccCCcCCCCC--------Cce
Confidence 111 3444444 669
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhc
Q 004047 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599 (777)
Q Consensus 531 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 599 (777)
+.|||.++.+.... ....+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 184 ~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 184 IAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred EEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999875111 11688999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=244.41 Aligned_cols=272 Identities=28% Similarity=0.399 Sum_probs=196.5
Q ss_pred ccccc--cCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCC
Q 004047 134 DLLSK--ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 211 (777)
Q Consensus 134 ~~~~~--g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 211 (777)
..|.. +++|+||+|+|||+||+..||+|.+... ..++|.+.
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~---------- 173 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDG---------- 173 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccC----------
Confidence 57776 9999999999999999999999975421 00112221
Q ss_pred CCCCC-CCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHH
Q 004047 212 TEDDR-SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 290 (777)
Q Consensus 212 ~~~~~-~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~ 290 (777)
... ...|..+|||||+|++++.... ....+.|+||+++++.+|++.... | ....++++.+|+
T Consensus 174 --~~~~~~~d~~~hGt~vag~ia~~~~~--------~~~~~~g~a~~~~~~~~~~~~~~~-g------~~~~~~~~~~i~ 236 (508)
T COG1404 174 --DPEPPFLDDNGHGTHVAGTIAAVIFD--------NGAGVAGVAPGAKLLLVKVLGSGG-G------SGELSDVAEGIE 236 (508)
T ss_pred --CCCCCCCCCCCCcceeeeeeeeeccc--------CCCccccccCCCcEEEEEeccCCC-C------cccHHHHHHHHH
Confidence 011 2568899999999999984211 112257999999999999998653 3 467888899999
Q ss_pred HHHhCC--ceEEEeecCCCCCCCCCccHHHHHHHHHHhCC-cEEEEecCCCCCCCCC----CcCCC--cceeeeccCccc
Q 004047 291 DAIRDG--VHVLSISIGTNQPFAFNRDGIAIGALNAVKHN-ILVACSAGNSGPAPSS----LSNLA--PWLITVGAGSLD 361 (777)
Q Consensus 291 ~a~~~g--vdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~G-i~vV~aAGN~G~~~~~----~~~~a--p~vitVgAs~~~ 361 (777)
++++.+ +++||||+|.. ........+..++..+...| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 237 ~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~- 314 (508)
T COG1404 237 GAANLGGPADVINLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL- 314 (508)
T ss_pred HHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-
Confidence 999999 99999999983 22234455666667777777 9999999999966421 11111 35566665321
Q ss_pred cccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHH
Q 004047 362 RDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGME 441 (777)
Q Consensus 362 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~ 441 (777)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004047 442 VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 521 (777)
Q Consensus 442 ~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 521 (777)
.+.++.||++|+..
T Consensus 315 ------------------------------------------------------------------~~~~~~~s~~g~~~ 328 (508)
T COG1404 315 ------------------------------------------------------------------SDTVASFSNDGSPT 328 (508)
T ss_pred ------------------------------------------------------------------CCccccccccCCCC
Confidence 24778899999741
Q ss_pred CCCCCcCCceeeCCCcEEE-----cccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCC-CCCHHHHHHH
Q 004047 522 LDPYILKPDITAPGLNILA-----AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP-DWSSAAIRSA 595 (777)
Q Consensus 522 ~~d~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~~s~~~ik~~ 595 (777)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..
T Consensus 329 ------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~ 391 (508)
T COG1404 329 ------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNL 391 (508)
T ss_pred ------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHH
Confidence 2299999999998 444410 2499999999999999999999999999 8999999999
Q ss_pred HHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCC
Q 004047 596 LMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 596 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
+..++.... .......++.|..+...+..
T Consensus 392 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 392 IVTTAGLTP-----------LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred Hhhcccccc-----------CCccccccccCccccccccc
Confidence 888887400 11133456666666555443
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=195.44 Aligned_cols=155 Identities=16% Similarity=0.170 Sum_probs=103.7
Q ss_pred cccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCC
Q 004047 133 QDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 212 (777)
Q Consensus 133 ~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 212 (777)
..+|..|++||+|.++|+|.||||-|||+..+ ..--..++|..+..+
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n-------------------------ynaeasydfssndpf-------- 197 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-------------------------YNAEASYDFSSNDPF-------- 197 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc-------------------------cCceeecccccCCCC--------
Confidence 48999999999999999999999999999632 111223334332111
Q ss_pred CCCCCCCC--CCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHH
Q 004047 213 EDDRSPRD--MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 290 (777)
Q Consensus 213 ~~~~~~~D--~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~ 290 (777)
+++...| .+.|||.|||-+++...++.+ | .|||.+.++..+|+++.. +..++++|-.
T Consensus 198 -pyprytddwfnshgtrcagev~aardngic---g------vgvaydskvagirmldqp-----------ymtdlieans 256 (629)
T KOG3526|consen 198 -PYPRYTDDWFNSHGTRCAGEVVAARDNGIC---G------VGVAYDSKVAGIRMLDQP-----------YMTDLIEANS 256 (629)
T ss_pred -CCCcccchhhhccCccccceeeeeccCCce---e------eeeeeccccceeeecCCc-----------hhhhhhhhcc
Confidence 1122223 579999999999887655443 2 499999999999998753 5566666532
Q ss_pred HHHh-CCceEEEeecCCCCCCCCCc---cHHHHHHHHHHh-----CCcEEEEecCCCCCC
Q 004047 291 DAIR-DGVHVLSISIGTNQPFAFNR---DGIAIGALNAVK-----HNILVACSAGNSGPA 341 (777)
Q Consensus 291 ~a~~-~gvdVIn~SlG~~~~~~~~~---~~~~~a~~~a~~-----~Gi~vV~aAGN~G~~ 341 (777)
.--+ ...+|.+-|||..+.....+ +...+++-+-+. .|-+.|.|.|..|.+
T Consensus 257 mghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 257 MGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred cCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 2211 36799999999864433333 333333333333 367999999998854
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=175.53 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=78.4
Q ss_pred CceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---CceEEEeecCCCCCC--CCCccHHHHHHHH
Q 004047 249 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---GVHVLSISIGTNQPF--AFNRDGIAIGALN 323 (777)
Q Consensus 249 g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~--~~~~~~~~~a~~~ 323 (777)
..+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||+|||..... ....+.+..++.+
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~------------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~ 148 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV------------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQ 148 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC------------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHH
Confidence 346799999999999997542 34577888888887 999999999983221 1123567777888
Q ss_pred HHhCCcEEEEecCCCCCCCCC-----------CcCCCcceeeeccCcccc
Q 004047 324 AVKHNILVACSAGNSGPAPSS-----------LSNLAPWLITVGAGSLDR 362 (777)
Q Consensus 324 a~~~Gi~vV~aAGN~G~~~~~-----------~~~~ap~vitVgAs~~~~ 362 (777)
|..+||+||+|+||+|..... .+...|+|++||+++...
T Consensus 149 a~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 149 AAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred HHhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999999999976532 234569999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=113.22 Aligned_cols=123 Identities=51% Similarity=0.825 Sum_probs=99.9
Q ss_pred eEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCc-chhhhhHHHhhcC
Q 004047 368 VVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGMEVKRAG 446 (777)
Q Consensus 368 ~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~-~~~~~~~~~~~~G 446 (777)
++|||++++.|+++++... ..+++++.... ........|.+..++..+++||||||+|+.+ .+.+|..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~-~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999997665 46677763321 1234557899998888999999999999999 9999999999999
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEE
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAI 495 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 495 (777)
|.|+|++++.............+|.+.|..++|+.|.+|++++.+++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999987654333333467999999999999999999998776554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=115.52 Aligned_cols=105 Identities=27% Similarity=0.346 Sum_probs=82.8
Q ss_pred CCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCcccc-CCccccEEEEeHHHHHHHHHHHhcC
Q 004047 411 CLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSY-DAHYLPATAVLYDDAIKIHEYIKST 489 (777)
Q Consensus 411 c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~-~~~~~p~~~i~~~~g~~l~~~~~~~ 489 (777)
|...++...+++|||+||+|+.|.+.+|..+++++||.|+|++|+......... ....+|.++|+.++|+.|.+|+++
T Consensus 36 g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~- 114 (143)
T cd02133 36 GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES- 114 (143)
T ss_pred CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC-
Confidence 555566677899999999999999999999999999999999998754322211 135789999999999999999988
Q ss_pred CCceEEEEeceEEeecCCCCccccccCCCCC
Q 004047 490 NNPTAIIKQARTVLHTQPAPFMANFTSRGPN 520 (777)
Q Consensus 490 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 520 (777)
.+++....+.. ..+.+.++.||||||.
T Consensus 115 ---~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 115 ---SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred ---CCeEEEEeccc-cccCCccccccCcCCC
Confidence 34444433333 4567889999999996
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.1e-09 Score=94.72 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc---ccc--CCccccEEEEeHHHHHHH
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE---YSY--DAHYLPATAVLYDDAIKI 482 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 482 (777)
...|.+..++..+++|||+||+||.|.|.+|..+++++||.++|+||+...... ... ....+|.++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 477999888888999999999999999999999999999999999998653211 111 345699999999999999
Q ss_pred HHHHhcCCCceEE
Q 004047 483 HEYIKSTNNPTAI 495 (777)
Q Consensus 483 ~~~~~~~~~~~~~ 495 (777)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999988776654
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=95.18 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=75.1
Q ss_pred CCCCCCCCCC--CCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHH
Q 004047 407 ETNQCLPGSL--TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAI 480 (777)
Q Consensus 407 ~~~~c~~~~~--~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~ 480 (777)
....|.+... ++.++.|+|+|++||.|+|.+|..+++++||.++|+||+...+.... .....+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998887 66789999999999999999999999999999999999876222111 22347899999999999
Q ss_pred HHHHHHhcCCCceEEE
Q 004047 481 KIHEYIKSTNNPTAII 496 (777)
Q Consensus 481 ~l~~~~~~~~~~~~~i 496 (777)
.|++++.++.+++++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999998877653
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.8e-09 Score=88.81 Aligned_cols=78 Identities=33% Similarity=0.455 Sum_probs=57.1
Q ss_pred EEEEEecCCCCCCcccchhhhhHHHHHHHhhCCc----hhhccceEEEeeeeEeEEEEEcCHHHHHHhhcCCCeEEEEeC
Q 004047 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNE----EEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPS 100 (777)
Q Consensus 25 ~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~ 100 (777)
+|||.|++... .......|.+++.+++.+. .....++.+.|+..||||+++++++++++|+++|+|++|+||
T Consensus 1 ~YIV~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D 76 (82)
T PF05922_consen 1 RYIVVFKDDAS----AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD 76 (82)
T ss_dssp EEEEEE-TTST----HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCCC----cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence 69999999873 3344667777777554321 233568999999999999999999999999999999999999
Q ss_pred CCCccccc
Q 004047 101 HPEKYSLQ 108 (777)
Q Consensus 101 ~~~~~~~~ 108 (777)
+ .++++
T Consensus 77 ~--~v~l~ 82 (82)
T PF05922_consen 77 Q--VVSLH 82 (82)
T ss_dssp C--EEEE-
T ss_pred c--eEecC
Confidence 9 77653
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=91.38 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCC-Ccc---c----cCCccccEEEEeHHHH
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-NEY---S----YDAHYLPATAVLYDDA 479 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-~~~---~----~~~~~~p~~~i~~~~g 479 (777)
...|.+... ..+++|+|+|++||.|.|.+|..+++++||.++|+||+.... ... . .....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 568999999999999999999999999999999999975431 111 1 1235799999999999
Q ss_pred HHHHHHHhcCCCceEEEE
Q 004047 480 IKIHEYIKSTNNPTAIIK 497 (777)
Q Consensus 480 ~~l~~~~~~~~~~~~~i~ 497 (777)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999988877663
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=91.04 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc--cc--cCCccccEEEEeHHHHHHH
Q 004047 407 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--YS--YDAHYLPATAVLYDDAIKI 482 (777)
Q Consensus 407 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l 482 (777)
....|.+.++.+.+++|+|+|++||.|+|.+|..+++++||.++|+||+...... .. .....||+++|+.++|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 3477999998888999999999999999999999999999999999998653111 11 1346789999999999999
Q ss_pred HHHHhcC
Q 004047 483 HEYIKST 489 (777)
Q Consensus 483 ~~~~~~~ 489 (777)
.+.+...
T Consensus 109 ~~~l~~~ 115 (120)
T cd02129 109 QQTFGDS 115 (120)
T ss_pred HHHhccC
Confidence 9887643
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-08 Score=89.19 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=72.0
Q ss_pred CCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHHHH
Q 004047 407 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIKI 482 (777)
Q Consensus 407 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 482 (777)
....|.+...+ .+++|||+||+|+.|.|.+|..++.++||.|+|++|+........ .....+|+++|+.++|+.|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45689888874 469999999999999999999999999999999999866421111 1235799999999999999
Q ss_pred HHHHhcCCCceEE
Q 004047 483 HEYIKSTNNPTAI 495 (777)
Q Consensus 483 ~~~~~~~~~~~~~ 495 (777)
++|++.+...+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988766554
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.3e-08 Score=89.42 Aligned_cols=86 Identities=26% Similarity=0.339 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCC-----Cc--cc-----cCCccccEEEEe
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-----NE--YS-----YDAHYLPATAVL 475 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-----~~--~~-----~~~~~~p~~~i~ 475 (777)
...|.+... +.+++|||+|++||.|+|.+|..+++++||.++|++|+.... .. +. .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 667999999999999999999999999999999999875532 11 11 124578999999
Q ss_pred HHHHHHHHHHHhcCCCceE
Q 004047 476 YDDAIKIHEYIKSTNNPTA 494 (777)
Q Consensus 476 ~~~g~~l~~~~~~~~~~~~ 494 (777)
..+|+.|++++..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999998776654
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-08 Score=89.03 Aligned_cols=79 Identities=32% Similarity=0.450 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCC----CCCccccCCccccEEEEeHHHHHHHH
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA----NGNEYSYDAHYLPATAVLYDDAIKIH 483 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~ 483 (777)
...|.+......+++||||||+||.|+|.+|..+++++||.|+|++|... ...........+|+++|+.++|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45577778889999999999999999999999999999999999999211 11223344678999999999999999
Q ss_pred HHH
Q 004047 484 EYI 486 (777)
Q Consensus 484 ~~~ 486 (777)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.1e-08 Score=89.32 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=73.3
Q ss_pred CCCCCCCCC--CCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCcc-c-----cCCccccEEEEeHHH
Q 004047 407 ETNQCLPGS--LTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY-S-----YDAHYLPATAVLYDD 478 (777)
Q Consensus 407 ~~~~c~~~~--~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~-~-----~~~~~~p~~~i~~~~ 478 (777)
....|.+.. +...+++||||||+|+.|.|.+|..+++++||.|+|++++....... . .....+|+++|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 446798887 77889999999999999999999999999999999999987532111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCceEE
Q 004047 479 AIKIHEYIKSTNNPTAI 495 (777)
Q Consensus 479 g~~l~~~~~~~~~~~~~ 495 (777)
|+.|.+|+.++.+.+++
T Consensus 109 g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 109 GEALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHHhcCCceEEe
Confidence 99999999987765543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.3e-08 Score=88.04 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc--c--ccCCccccEEEEeHHHHHHHHH
Q 004047 409 NQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--Y--SYDAHYLPATAVLYDDAIKIHE 484 (777)
Q Consensus 409 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~~ 484 (777)
..|.+..+ +.+++|||+|++||.|.|.+|..+++++||.++|+||+...+.. . ..+...+|.++|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46887655 35799999999999999999999999999999999998632211 1 1224679999999999999999
Q ss_pred HHhcCCCceEE
Q 004047 485 YIKSTNNPTAI 495 (777)
Q Consensus 485 ~~~~~~~~~~~ 495 (777)
.+.++.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99999877664
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=88.54 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc------cCCccccEEEEeHHHHHH
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS------YDAHYLPATAVLYDDAIK 481 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 481 (777)
...|.+.. .+++|+|+|++||.|+|.+|..+++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 379999999999999999999999999999999998764322111 113579999999999999
Q ss_pred HHHHHhcCCCceE
Q 004047 482 IHEYIKSTNNPTA 494 (777)
Q Consensus 482 l~~~~~~~~~~~~ 494 (777)
|++++..+.+.++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998877654
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=86.30 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCCCCCCCCC--CC----cccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc-c----------ccCCcccc
Q 004047 408 TNQCLPGSLT--PE----KVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-Y----------SYDAHYLP 470 (777)
Q Consensus 408 ~~~c~~~~~~--~~----~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~-~----------~~~~~~~p 470 (777)
...|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|+||+.+.... . ......||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4678876543 22 378999999999999999999999999999999998653211 1 01234689
Q ss_pred EEEEeHHHHHHHHHHHhcCCCceEE
Q 004047 471 ATAVLYDDAIKIHEYIKSTNNPTAI 495 (777)
Q Consensus 471 ~~~i~~~~g~~l~~~~~~~~~~~~~ 495 (777)
+++|+..+|+.|.+.+.++..++++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999998876654
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.9e-07 Score=81.92 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=61.7
Q ss_pred eEeecCCceEEEEEEEEecCCCCeeEEEEeeCC--------Ccc-----------EEEEecceEEEccCCcEEEEEEEEE
Q 004047 680 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPP--------MGV-----------SVKANPSILFFDHIGQKKSFTITVR 740 (777)
Q Consensus 680 ~~~~~~~~~~t~~~tvtn~~~~~~ty~~~~~~~--------~g~-----------~v~v~p~~~~~~~~~~~~~~~v~~~ 740 (777)
|++++.....+++++|+|.|+.+.+|+++..+. .|. .+...|.++++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 345566667899999999999999999887611 111 56667888888 6799999999999
Q ss_pred ECcccccccCCCceEEEEEEEECC-c-cEEEeeEE
Q 004047 741 LGSETTRQGLTKQYVFGWYRWTDG-L-HLVRSPMA 773 (777)
Q Consensus 741 ~~~~~~~~~~~~~~~~G~~~~~~~-~-~~v~~P~~ 773 (777)
.++. ....++.+++|+|.+++. . +.+++||+
T Consensus 80 ~p~~--~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSG--LDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GG--GHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhc--CCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9532 122568899999999963 3 58999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-07 Score=85.39 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc-cccCCccccEEEEeHHHHHHHHH
Q 004047 406 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-YSYDAHYLPATAVLYDDAIKIHE 484 (777)
Q Consensus 406 ~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~ 484 (777)
.....|.+...+..+++|+|+|++||.|.|.+|..+++++||.++|+||+...... ...+...+|.+.+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 34578998776667899999999999999999999999999999999998654321 1223334565655 999999999
Q ss_pred HHhcCCCceEE
Q 004047 485 YIKSTNNPTAI 495 (777)
Q Consensus 485 ~~~~~~~~~~~ 495 (777)
.+..+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99988776654
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=86.78 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCCCCcccceEEEEecCCcc-----hhhhhHHHhhcCceEEEEecCCCC-CC---cccc--CCccccEEEEeHHHHHHHH
Q 004047 415 SLTPEKVKGKIVLCMRGSGF-----KLSKGMEVKRAGGVGLILGNSPAN-GN---EYSY--DAHYLPATAVLYDDAIKIH 483 (777)
Q Consensus 415 ~~~~~~~~g~ivl~~~g~~~-----~~~~~~~~~~~Ga~gvi~~n~~~~-~~---~~~~--~~~~~p~~~i~~~~g~~l~ 483 (777)
++...+++|||+|++||.|. |.+|.++++++||.++|+||+... +. .+.. ....||+++|+.++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 44566899999999999999 999999999999999999999731 21 1122 1468999999999999999
Q ss_pred HHHhcC
Q 004047 484 EYIKST 489 (777)
Q Consensus 484 ~~~~~~ 489 (777)
+.+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988544
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-07 Score=82.95 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCC--ccc----cCCccccEEEEeHHHHH
Q 004047 407 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN--EYS----YDAHYLPATAVLYDDAI 480 (777)
Q Consensus 407 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~--~~~----~~~~~~p~~~i~~~~g~ 480 (777)
....|.+. +..+++|||+|++||.|+|.+|..+++++||.++|+||+..... ... .....+|+++|+.++++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34689766 56889999999999999999999999999999999998765321 111 22357999999999999
Q ss_pred HHHHHHhcC
Q 004047 481 KIHEYIKST 489 (777)
Q Consensus 481 ~l~~~~~~~ 489 (777)
.|..++...
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 998876543
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.4e-07 Score=85.57 Aligned_cols=84 Identities=24% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCCCCCCCCCC---CcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCC-cccc-----CCccccEEEEeHHH
Q 004047 408 TNQCLPGSLTP---EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN-EYSY-----DAHYLPATAVLYDD 478 (777)
Q Consensus 408 ~~~c~~~~~~~---~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~-~~~~-----~~~~~p~~~i~~~~ 478 (777)
...|.+....+ .++.|+|+|++||.|+|.+|..+++++||.++|+||+..... .... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798777644 789999999999999999999999999999999999865322 1111 14589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004047 479 AIKIHEYIKSTNN 491 (777)
Q Consensus 479 g~~l~~~~~~~~~ 491 (777)
|+.|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987755
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-06 Score=93.67 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=96.3
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
..|..+++|+++.|+|.|.|+...||+.... ....+..++...... ..
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~~~-------p~ 71 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHDND-------PE 71 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCCCC-------cc
Confidence 7899999999999999999999999998642 112222222221100 01
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
.-.+......|||-|++-.+....+... ..|+++++++..++++... .. +...+.....
T Consensus 72 ~~~~~~~~~~~g~~Ca~~~a~~~~~~~C---------~vg~~~~~~~~g~~~l~~~----------v~--~~~~~~~~~~ 130 (431)
T KOG3525|consen 72 PRCDGTNENKHGTRCAGCVAARANNLTC---------GVGVAYNATIGGIRMLAGC----------VS--DAVEAPSLGF 130 (431)
T ss_pred cccCCCCccccCCCCCcccccccCCCcC---------CCCcccCccccceeeeeee----------cc--cceecccccC
Confidence 1112224588999999999987533222 2599999999999998643 11 2222222222
Q ss_pred -hCCceEEEeecCCCCCCCC---CccHHHHHHHH-----HHhCCcEEEEecCCCCCCC
Q 004047 294 -RDGVHVLSISIGTNQPFAF---NRDGIAIGALN-----AVKHNILVACSAGNSGPAP 342 (777)
Q Consensus 294 -~~gvdVIn~SlG~~~~~~~---~~~~~~~a~~~-----a~~~Gi~vV~aAGN~G~~~ 342 (777)
..-+++-+.|||...-... .......+... ...+|-+.|++.||.|...
T Consensus 131 ~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 131 GPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 2357899999998432111 11222222232 3356889999999988543
|
|
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-06 Score=100.15 Aligned_cols=95 Identities=19% Similarity=0.222 Sum_probs=56.7
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc-eEEEeecCCCC--CCCC--CccHHHHHHHHHH
Q 004047 251 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV-HVLSISIGTNQ--PFAF--NRDGIAIGALNAV 325 (777)
Q Consensus 251 ~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~--~~~~--~~~~~~~a~~~a~ 325 (777)
.+-+||.|+|..|-. .. .....+..|+.+....=+ -+|-.||+... .... .-+.+......|.
T Consensus 288 s~A~AP~A~I~lvva--p~----------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qas 355 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN----------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQAS 355 (1174)
T ss_pred hhccCccCceEEEEc--CC----------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhh
Confidence 467899999999877 21 122333333333222211 33445666521 1111 2234444556788
Q ss_pred hCCcEEEEecCCCCCCCCC--------CcCCCcceeeecc
Q 004047 326 KHNILVACSAGNSGPAPSS--------LSNLAPWLITVGA 357 (777)
Q Consensus 326 ~~Gi~vV~aAGN~G~~~~~--------~~~~ap~vitVgA 357 (777)
.+||.+++|+|.+|....+ .+..+|++++||-
T Consensus 356 aeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 356 AEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999999866543 2234699999996
|
|
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.8e-05 Score=73.26 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCCCCcccceEEEEecCCc--chhhhhHHHhhcCceEEEEecCCCCCCcc-----c--cCCccccEEEEeHHHHHHHHHH
Q 004047 415 SLTPEKVKGKIVLCMRGSG--FKLSKGMEVKRAGGVGLILGNSPANGNEY-----S--YDAHYLPATAVLYDDAIKIHEY 485 (777)
Q Consensus 415 ~~~~~~~~g~ivl~~~g~~--~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~~ 485 (777)
++...+++|||||++++.+ .+.+|..++.++||.|+|++|+....... . .....+|++.|+.+||+.|.+.
T Consensus 37 d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 37 DFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARV 116 (127)
T ss_pred HcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHH
Confidence 3446679999999999999 88999999999999999999875543211 1 2235799999999999999999
Q ss_pred HhcCCCc
Q 004047 486 IKSTNNP 492 (777)
Q Consensus 486 ~~~~~~~ 492 (777)
++.+...
T Consensus 117 l~~g~~~ 123 (127)
T cd04819 117 AERNDTL 123 (127)
T ss_pred HhcCCce
Confidence 9876543
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0002 Score=66.95 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=62.8
Q ss_pred CCCCcccceEEEEecCCc------chhhh-------hHHHhhcCceEEEEecCCC-------CCCccc-cCCccccEEEE
Q 004047 416 LTPEKVKGKIVLCMRGSG------FKLSK-------GMEVKRAGGVGLILGNSPA-------NGNEYS-YDAHYLPATAV 474 (777)
Q Consensus 416 ~~~~~~~g~ivl~~~g~~------~~~~~-------~~~~~~~Ga~gvi~~n~~~-------~~~~~~-~~~~~~p~~~i 474 (777)
++..+++|||||+.|+.| .|..| ...+.++||.++|++|... .+.... .....+|++.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 346689999999999999 88888 6899999999999998632 221111 22356999999
Q ss_pred eHHHHHHHHHHHhcCCCceE
Q 004047 475 LYDDAIKIHEYIKSTNNPTA 494 (777)
Q Consensus 475 ~~~~g~~l~~~~~~~~~~~~ 494 (777)
+.+++..|...++.+..+.+
T Consensus 113 s~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 113 SVEDADMLERLAARGKPIRV 132 (134)
T ss_pred chhcHHHHHHHHhCCCCeEE
Confidence 99999999999988765554
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0012 Score=64.23 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCC------------------cc-----------c-c---
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN------------------EY-----------S-Y--- 464 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~------------------~~-----------~-~--- 464 (777)
..+++|||+|+++|.|.+.+|..+|+++||+|+|+|++..+.. .+ . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4689999999999999999999999999999999999842100 00 0 0
Q ss_pred -CCccccEEEEeHHHHHHHHHHHhc
Q 004047 465 -DAHYLPATAVLYDDAIKIHEYIKS 488 (777)
Q Consensus 465 -~~~~~p~~~i~~~~g~~l~~~~~~ 488 (777)
....||++-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 124589999999999999998754
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0038 Score=67.79 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCC------CccccCCccccEEEEeHHHHHHHHHHHhcCCC
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG------NEYSYDAHYLPATAVLYDDAIKIHEYIKSTNN 491 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~------~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 491 (777)
..++++|++++.||.|.|.+|...++++||.++++.|+..+- +.....+..||+.+|++.+++.+..-...+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 567999999999999999999999999999999999985422 22233457899999999999999987777777
Q ss_pred ceEEEEec
Q 004047 492 PTAIIKQA 499 (777)
Q Consensus 492 ~~~~i~~~ 499 (777)
+.+.+...
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 66655543
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0046 Score=57.83 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=50.3
Q ss_pred cceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCc------------------chhhhhHHHhhcCceE
Q 004047 388 KMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG------------------FKLSKGMEVKRAGGVG 449 (777)
Q Consensus 388 ~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~------------------~~~~~~~~~~~~Ga~g 449 (777)
...++|+.+.. .....|...++...|++|||||+.|+.| .+..|...+.++||.|
T Consensus 20 ~~aelVfvGyG-------i~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYG-------IKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCC-------cCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 34666666532 1235688888889999999999999877 4667999999999999
Q ss_pred EEEecCCC
Q 004047 450 LILGNSPA 457 (777)
Q Consensus 450 vi~~n~~~ 457 (777)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0064 Score=56.55 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCcccceEEEEecCCcc------------hhhhhHHHhhcCceEEEEecCCC
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGSGF------------KLSKGMEVKRAGGVGLILGNSPA 457 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~~~------------~~~~~~~~~~~Ga~gvi~~n~~~ 457 (777)
...|...++...+++|||||+.++.|. +..|..++.++||.|+|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 356887888888999999999998863 66899999999999999999854
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0087 Score=56.68 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCcccceEEEEecCC------------------cchhhhhHHHhhcCceEEEEecCCCC
Q 004047 408 TNQCLPGSLTPEKVKGKIVLCMRGS------------------GFKLSKGMEVKRAGGVGLILGNSPAN 458 (777)
Q Consensus 408 ~~~c~~~~~~~~~~~g~ivl~~~g~------------------~~~~~~~~~~~~~Ga~gvi~~n~~~~ 458 (777)
...|...++...+++|||||+.|+. |.+..|..++.++||.|||+|++...
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4567777888889999999998874 46778999999999999999998653
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.014 Score=58.93 Aligned_cols=39 Identities=38% Similarity=0.491 Sum_probs=36.3
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCC
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 456 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 456 (777)
..+++|||||+++|.+.+..|..+|+++||.|+|+|++.
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 568999999999999988899999999999999999874
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.063 Score=44.93 Aligned_cols=64 Identities=30% Similarity=0.296 Sum_probs=39.4
Q ss_pred ceEEEEEEEEecCCCC-eeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCce
Q 004047 687 GTVIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQY 754 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 754 (777)
...+++++|+|.|..+ ...++++..|.|-.+...|..+.--++|++++++++|+++ .....+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp----~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP----ADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-----TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC----CCCCCceE
Confidence 4578999999999755 5688888899999987788877544789999999999996 34445555
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.47 Score=41.80 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=60.3
Q ss_pred ceEEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEECCcc
Q 004047 687 GTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLH 766 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 766 (777)
...+.+++|+|.+..+..|++.........++++|..-.+ ++|++.++.|++... .+.+.+ .+.|...-...
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~------~~~g~~-~~~l~i~~e~~ 91 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT------KPLGDY-EGSLVITTEGG 91 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC------CCCceE-EEEEEEEECCe
Confidence 4577888999999999999997654334556777776556 679999999999952 234444 78887765456
Q ss_pred EEEeeEEEEe
Q 004047 767 LVRSPMAVSF 776 (777)
Q Consensus 767 ~v~~P~~~~~ 776 (777)
.+.+|+-+..
T Consensus 92 ~~~i~v~a~~ 101 (102)
T PF14874_consen 92 SFEIPVKAEV 101 (102)
T ss_pred EEEEEEEEEE
Confidence 7888887654
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.021 Score=53.37 Aligned_cols=39 Identities=28% Similarity=0.231 Sum_probs=36.8
Q ss_pred CcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCC
Q 004047 419 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 457 (777)
Q Consensus 419 ~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~ 457 (777)
.+++|||+|++.|...+-.|.++|++.||.|+|+|.++.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 679999999999999999999999999999999999854
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.039 Score=51.01 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc------ccc----CCccccEEEEeH
Q 004047 407 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE------YSY----DAHYLPATAVLY 476 (777)
Q Consensus 407 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~------~~~----~~~~~p~~~i~~ 476 (777)
...+|.... +.....+.++|++||+|+|..|..+++++||.++|+..+...... ... +...+|+.++-.
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 456676432 345678899999999999999999999999999999887543321 122 345789999988
Q ss_pred HHHHHHHHHHhcCCCceE
Q 004047 477 DDAIKIHEYIKSTNNPTA 494 (777)
Q Consensus 477 ~~g~~l~~~~~~~~~~~~ 494 (777)
.+|.-+...++.....-+
T Consensus 152 ~~Gy~ir~sL~r~~r~ha 169 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHA 169 (193)
T ss_pred cceEEEehhHHHhCCccE
Confidence 888766655554444333
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.097 Score=55.93 Aligned_cols=81 Identities=19% Similarity=0.116 Sum_probs=62.8
Q ss_pred CCCCCCCC---CCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHHH
Q 004047 409 NQCLPGSL---TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIK 481 (777)
Q Consensus 409 ~~c~~~~~---~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 481 (777)
++|.+... ........++|+.||+|+|.+|..+++++|..++|+||+........ .....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665432 23456778999999999999999999999999999999866543322 234678999999999999
Q ss_pred HHHHHhcC
Q 004047 482 IHEYIKST 489 (777)
Q Consensus 482 l~~~~~~~ 489 (777)
|.+|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99875443
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=92.50 E-value=3.3 Score=37.58 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=39.2
Q ss_pred EEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECc
Q 004047 689 VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 743 (777)
Q Consensus 689 ~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~ 743 (777)
-.+++.|.|....+.+|++++..++|+.+......+++ ++|++..+.|.+..+.
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 56889999999999999999998889999655578888 6799999999999964
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.84 Score=43.68 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=34.9
Q ss_pred CCCCCCcccceEEEEecCCcchh-------------------hhhHHHhhcCceEEEEecCC
Q 004047 414 GSLTPEKVKGKIVLCMRGSGFKL-------------------SKGMEVKRAGGVGLILGNSP 456 (777)
Q Consensus 414 ~~~~~~~~~g~ivl~~~g~~~~~-------------------~~~~~~~~~Ga~gvi~~n~~ 456 (777)
.++...|++||||++.++...+. .|...+.+.||.|+|++++.
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 35667899999999997655332 38999999999999999874
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.19 E-value=4.1 Score=45.02 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=57.8
Q ss_pred ceEEEEEEEEecCCCCee-EEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSKSV-YFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWT 762 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~~ 762 (777)
.+.++...+.|.|+.+.| -++++..|+|-++.|.|.++..-++|+++++++|++++ ..+.++.| +-+++-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP----~~a~aGdY-~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVP----EDAGAGDY-RITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcC----CCCCCCcE-EEEEEEe
Confidence 357888999999987754 57899999999999999987665789999999999997 46677877 4556554
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.77 E-value=1 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.1
Q ss_pred cCCCCceEEEEeecCCCCCCCCCC
Q 004047 139 ARYGQDVIVGLVDNGVWPESKSFS 162 (777)
Q Consensus 139 g~~G~GV~VgVIDtGid~~Hp~f~ 162 (777)
.|.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 789999999999999999988774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 777 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-115 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 2e-99 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 3e-07 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 3e-05 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 4e-04 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 4e-04 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 6e-04 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 6e-04 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 6e-04 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 6e-04 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 7e-04 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 7e-04 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 663 bits (1711), Expect = 0.0
Identities = 248/677 (36%), Positives = 357/677 (52%), Gaps = 69/677 (10%)
Query: 109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGP 168
TTRSW+F+G + +++ +++VG++D G+WPES SF DEG P
Sbjct: 1 TTRSWDFLGFP-------------LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSP 47
Query: 169 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 228
P WKG C+T F CN+KIIGAR Y G + D PRD +GHGTHT
Sbjct: 48 PPPKWKGTCETSNNFR---CNRKIIGARSYHIGRP------ISPGDVNGPRDTNGHGTHT 98
Query: 229 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288
AST AG V A+ +G GTA GG PLAR+A YK CW + C + D+LAA
Sbjct: 99 ASTAAGGLVSQANLYG-LGLGTARGGVPLARIAAYKVCWN---------DGCSDTDILAA 148
Query: 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 348
DDAI DGV ++S+S+G P + D IAIG+ +AV+ IL + SAGN GP + ++L
Sbjct: 149 YDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208
Query: 349 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNET 408
+PWL++V A ++DR FV V +G G G ++ ++ + +PLV D+ G ++ +
Sbjct: 209 SPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTS 267
Query: 409 NQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHY 468
C S+ P +KGKIV+C G K G +L + D++
Sbjct: 268 RFCTDKSVNPNLLKGKIVVCEASFGPH----EFFKSLDGAAGVL---MTSNTRDYADSYP 320
Query: 469 LPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528
LP++ + +D + YI S +P A I ++ T+ AP + +F+SRGPN ++K
Sbjct: 321 LPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRATKDVIK 379
Query: 529 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 588
PDI+ PG+ ILAAW + +R + I SGTSMSCPH+ A +K +P WS
Sbjct: 380 PDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWS 436
Query: 589 SAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYL 648
AAI+SALMTTA N + P F++GSGH P KA PGLVYDA+ DY+
Sbjct: 437 PAAIKSALMTTASPMNARFNP--------QAEFAYGSGHVNPLKAVRPGLVYDANESDYV 488
Query: 649 LYLCSHGFS------FTNPVFRCPN-KPPSALNLNYPSIAI---PNLNGTVIVKRTVTNV 698
+LC G++ T C + +LNYPS + P+ RT+T+V
Sbjct: 489 KFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSV 548
Query: 699 GGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGW 758
S Y P G+++ NP++L F+ +G +KSFT+TV R + V
Sbjct: 549 APQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV-------RGSIKGFVVSAS 601
Query: 759 YRWTDGLHLVRSPMAVS 775
W+DG+H VRSP+ ++
Sbjct: 602 LVWSDGVHYVRSPITIT 618
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 660 bits (1703), Expect = 0.0
Identities = 244/683 (35%), Positives = 348/683 (50%), Gaps = 56/683 (8%)
Query: 109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGP 168
TT + +F+ L+ L + GQDVIV ++D+G+WPES SF D+GM
Sbjct: 1 TTHTSDFLKLNP-----------SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPE 49
Query: 169 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 228
+PK WKGIC+ G FN+S+CN+K+IGA Y+ KG +N S RD DGHGTH
Sbjct: 50 IPKRWKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVN--ITMNSARDTDGHGTHC 107
Query: 229 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288
AS AG S F G+A GTA G AP ARLA+YK + F +D++AA
Sbjct: 108 ASITAGNFAKGVSHF-GYAPGTARGVAPRARLAVYKFSF---------NEGTFTSDLIAA 157
Query: 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 348
+D A+ DGV ++SIS G + D I+I + A+ +LV+ SAGN GP SL+N
Sbjct: 158 MDQAVADGVDMISISYGYRFIPLYE-DAISIASFGAMMKGVLVSASAGNRGPGIGSLNNG 216
Query: 349 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLK-KMHPLVYAADVVVPGVHQNE 407
+PW++ V +G DR F G + LG G++I G ++ P + P++Y +
Sbjct: 217 SPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTL--------S 268
Query: 408 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAH 467
E + IV+C F + + RA I + + +
Sbjct: 269 DCSSEELLSQVENPENTIVICDDNGDFS-DQMRIITRARLKAAIFISE--DPGVFRSATF 325
Query: 468 YLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYIL 527
P V + ++ Y+K++ PTA I T L T+PAP +A ++RGP+ I
Sbjct: 326 PNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGIS 385
Query: 528 KPDITAPGLNILAAWSEASSPSKLAFD-KRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD 586
KPDI APG+ ILAA+ + + + Y + SGTSM+ PH A AA+LKA HP+
Sbjct: 386 KPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPE 445
Query: 587 WSSAAIRSALMTTAWMKNNKALPITNAD-GSIATPFSFGSGHFRPTKAADPGLVYDASYE 645
WS +AIRSA+MTTA +N PI ++D ATP G+GH P +A DPGLVYDA+ +
Sbjct: 446 WSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQ 505
Query: 646 DYLLYLCSHGFSFTNPVF-----RCPNKPPSALNLNYPS-IAIPNLNG-----TVIVKRT 694
DY+ LCS F+ N + +LNYPS IA+ ++ G KRT
Sbjct: 506 DYVNLLCSLNFTEEQFKTIARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRT 565
Query: 695 VTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQY 754
VTNVG + Y K P ++ +P IL F + +K+S+T+T+ +
Sbjct: 566 VTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTI-----RYIGDEGQSR 620
Query: 755 VFGWYRWT--DGLHLVRSPMAVS 775
G W +G H VRSP+ S
Sbjct: 621 NVGSITWVEQNGNHSVRSPIVTS 643
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 479 bits (1233), Expect = e-157
Identities = 122/652 (18%), Positives = 204/652 (31%), Gaps = 88/652 (13%)
Query: 133 QDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNS----SLC 188
+ L KA G +V ++D G +++ K + +
Sbjct: 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV 66
Query: 189 NKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAE 248
N K+ Y D HGTH + ++G NA +
Sbjct: 67 NDKVAYYHDY--------------SKDGKTAVDQEHGTHVSGILSG----NAPSET-KEP 107
Query: 249 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG-TN 307
G P A+L + + G + + AI DAI G V+++S G
Sbjct: 108 YRLEGAMPEAQLLLMRVEIVN-------GLADYARNYAQAIRDAINLGAKVINMSFGNAA 160
Query: 308 QPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS---NLAPWLITVGAGSLDRDF 364
+A D A + + SAGN P VG +
Sbjct: 161 LAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADST 220
Query: 365 VGPVVLGTGMEIIGKTV--TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVK 422
+ ++ T K P++ + + VK
Sbjct: 221 LTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVK 280
Query: 423 GKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSY-DAHYLPATAVLYDDAIK 481
GKI L RG K + K+AG VG+++ ++ G + +PA + D +
Sbjct: 281 GKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLL 340
Query: 482 IHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 541
+ + + T A VL T ++ F+S G A +KPDI APG +IL++
Sbjct: 341 LKDNPQKTITFNA----TPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSS 394
Query: 542 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601
+ Y SGTSMS P VA LL+ + S + A
Sbjct: 395 VANNK-------------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAK 441
Query: 602 -MKNNKALPITNADG-SIATPFSFGSGHFRPTKAADPGL-VYDASYEDYLLYLC--SHGF 656
+ + A + + D + +P G+G KA+ + V D ++L S F
Sbjct: 442 KVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVTDKDNTSSKVHLNNVSDKF 501
Query: 657 SFTNPVFRCPNKPPSALNLNYPSIAI-PNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGV 715
T NK L Y + ++G S +
Sbjct: 502 EVT---VNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQK----------I 548
Query: 716 SVKANPSILFFDHIGQKKSFTITV---RLGSETTRQGLTKQYVFGWYRWTDG 764
++ A K T+ + R + Q ++ G+ R+
Sbjct: 549 TIPA----------NSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQD 590
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 68/416 (16%), Positives = 133/416 (31%), Gaps = 93/416 (22%)
Query: 212 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPK 271
T + P + + HGTH A T+A + N G A + I K
Sbjct: 53 TGNWYQPGNNNAHGTHVAGTIAA--IANNEGVVGVMPNQN------ANIHIVKVF----- 99
Query: 272 ASKAAGNTCFEADMLAAIDDAIRD-GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNIL 330
G + + ++AAID + G +V+++S+G + R+ + + +L
Sbjct: 100 NEAGWGYS---SSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVL 152
Query: 331 VACSAGNSGPA----PSSLSNLAPWLITVGA-GSLDR-----------DFVGPVVLGTGM 374
+ +AGN+G + P+S +++V A S + GP G +
Sbjct: 153 LIAAAGNAGDSSYSYPAS----YDSVMSVAAVDSNLDHAAFSQYTDQVEISGP---GEAI 205
Query: 375 --EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 432
+ ++ GV + S P + +
Sbjct: 206 LSTVTVGEGRLADITIG-----GQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAEC 260
Query: 433 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAI--------KIHE 484
+ A + L+ + ++ TA + +
Sbjct: 261 TVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNP 320
Query: 485 YIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSE 544
++ N+ + + A +A G + ++ G
Sbjct: 321 FLVDANSDITV-----PSVSVDRATGLALKAKLGQS--------TTVSNQGNQ------- 360
Query: 545 ASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
Y ++GTSM+ PHV+ A L+ + HP+ S++ +R+AL TA
Sbjct: 361 --------------DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+ +F+SRGP A LKP++ APG I+AA + +S + D YT GT+M+
Sbjct: 309 ITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 571 PHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRP 630
PHVA AALL HP W+ +++AL+ TA ++G+G
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETA----------DIVKPDEIADIAYGAGRVNA 412
Query: 631 TKAADPGLVYDASYEDYL 648
KAA ++ Y+
Sbjct: 413 YKAAYYDNYAKLTFTGYV 430
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 4e-17
Identities = 68/367 (18%), Positives = 122/367 (33%), Gaps = 107/367 (29%)
Query: 11 LLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYK 70
L + + Q+ I+ F + EKA + + A Y+Y
Sbjct: 23 LFKKVQRMSWDQEVSTIIMFDNQADKEKA---------------VEILDFLGAKIKYNYH 67
Query: 71 HSINGFSAVLTPDEAARL-----------SELEEVVSVYPSHPEKYSLQTT---RSWEFV 116
I + + + + ++L V + + K +++T S V
Sbjct: 68 I-IPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQV 126
Query: 117 GLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGI 176
+ WN G + +G++D G+
Sbjct: 127 MATNM----WN----------LGYDGSGITIGIIDTGIDASHPDLQG------------- 159
Query: 177 CQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRR 236
K+IG + +P D +GHGTH AS AG
Sbjct: 160 --------------KVIGWV-------------DFVNGKTTPYDDNGHGTHVASIAAGT- 191
Query: 237 VPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID----DA 292
G + G G AP A+L K + +D++ +D +
Sbjct: 192 -------GAASNGKYKGMAPGAKLVGIKVL--------NGQGSGSISDIINGVDWAVQNK 236
Query: 293 IRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSN--LAP 350
+ G+ V+++S+G++Q D ++ NA ++V +AGNSGP ++ + A
Sbjct: 237 DKYGIKVINLSLGSSQSSDGT-DSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAAS 295
Query: 351 WLITVGA 357
+ITVGA
Sbjct: 296 KVITVGA 302
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 44/167 (26%)
Query: 442 VKRAGGVGLIL----GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 497
V A G+++ GNS + Y P P AI
Sbjct: 153 VNYAYSKGVLIVAAAGNSGYSQGTIGY-----PGAL------------------PNAIAV 189
Query: 498 QARTVLHTQPAPFMANFTSRGPNALDPYIL----KPDITAPGLNILAAWSEASSPSKLAF 553
A + +A+++SRG + + +I+APG ++ + W
Sbjct: 190 AALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------- 241
Query: 554 DKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
Y SGTSM+ PHV+ AA + A +P S+ +RS L A
Sbjct: 242 -----GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 9e-14
Identities = 42/201 (20%), Positives = 68/201 (33%), Gaps = 32/201 (15%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
T + S D +GHGTH A T + + G G AP A L YK
Sbjct: 57 ATTPINNSCTDRNGHGTHVAGTALADGGSDQA-------GIY-GVAPDADLWAYKVL--- 105
Query: 270 PKASKAAGNTCFEADMLAAIDDAIRDGVH-----VLSISIGTNQPFAFNRDGIAIGALNA 324
+ + D+ AAI A ++S+S+G++ + + A
Sbjct: 106 -----LDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YA 156
Query: 325 VKHNILVACSAGNSGPAPSSLSNLA--PWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 382
+L+ +AGNSG + ++ P I V A L+ G T
Sbjct: 157 YSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA--LENVQQNGTYRVADYSSRGYIST 214
Query: 383 PYNLKKMHPLVYAADVVVPGV 403
+ + ++ PG
Sbjct: 215 AGDYVIQEGDI---EISAPGS 232
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 98.0 bits (243), Expect = 5e-21
Identities = 46/233 (19%), Positives = 75/233 (32%), Gaps = 39/233 (16%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+ +TSR P + APG I + + SK + +GTSM+
Sbjct: 419 VYTWTSRDPCID--GGQGVTVCAPGGAIASVP--QFTMSK---------SQLMNGTSMAA 465
Query: 571 PHVAAAAAL----LKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSG 626
PHVA A AL LK + ++S +I+ A+ T A + D PF+ G G
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVT-------ATKLGYVD-----PFAQGHG 513
Query: 627 HFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLN 686
KA + + S ++ L F+ V +K + N+
Sbjct: 514 LLNVEKAFEHLTEHRQSKDNML--------RFSVRVGNNADKGIHLRQGVQRNSIDYNVY 565
Query: 687 GTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 739
I K + + L + +S + V
Sbjct: 566 IEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSY--GTRSIAVRV 616
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 2e-17
Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 25/161 (15%)
Query: 206 YGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKA 265
+ HGTH +S +G + G AP A++
Sbjct: 254 VNVHDEGNVLEVVGMSSPHGTHVSSIASGN---------HSSRDVD-GVAPNAKIVSMTI 303
Query: 266 CWATPKASKAAGNTCFEADMLAAIDDAI-----RDGVHVLSISIGTNQPFAFNRDGIAIG 320
G+ ++ A+ + + V+++S G + ++ + +
Sbjct: 304 G------DGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELM 357
Query: 321 ALNAVKHNILVACSAGNSGPAPSSLSN----LAPWLITVGA 357
K+ ++ SAGN GPA ++ P LI VGA
Sbjct: 358 NEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGA 398
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
A+F+S GP + D+ APG++I + KY ++GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMAS 224
Query: 571 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
PHVA AAAL+ + HP+W++ +RS+L T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTT 254
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 27/153 (17%)
Query: 210 NATEDDRSP-RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA 268
+ + +P +D + HGTH A TVA + G G AP A L K
Sbjct: 49 SMVPSETNPFQDNNSHGTHVAGTVAAL---------NNSIGVL-GVAPSASLYAVKVL-- 96
Query: 269 TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHN 328
+ +G + ++ I+ AI + + V+++S+G A + + AV
Sbjct: 97 ---GADGSGQY---SWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASG 146
Query: 329 ILVACSAGNSGPAPSSLSNL----APWLITVGA 357
++V +AGN G + SS + P +I VGA
Sbjct: 147 VVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGA 179
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
A+F+S G + ++ APG + + + + Y +GTSM+
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTYPTNT-------------YATLNGTSMAS 223
Query: 571 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
PHVA AAAL+ + HP+ S++ +R+ L +TA
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA 253
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
+ + D +GHGTH A TVA G G AP L K
Sbjct: 49 SFVAGEAYNTDGNGHGTHVAGTVAAL---------DNTTGVL-GVAPSVSLYAVKVL--- 95
Query: 270 PKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNI 329
S +G+ + +++ I+ A +G+ V+++S+G + + NA +
Sbjct: 96 --NSSGSGSY---SGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGV 146
Query: 330 LVACSAGNSGPAPSSLSNL----APWLITVGA 357
+V +AGNSG + S+ + +I VGA
Sbjct: 147 VVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGA 178
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 21/90 (23%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
A+F+ G DI APG+N+ + + ++ Y +GTSM+
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQSTYPGST-------------YASLNGTSMAT 218
Query: 571 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
PHVA AAAL+K +P WS+ IR+ L TA
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 22/148 (14%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
+ + S +D +GHGTH A T+A + G G AP A L K
Sbjct: 48 SFVPGEPSTQDGNGHGTHVAGTIAAL---------NNSIGVL-GVAPSAELYAVKVL--- 94
Query: 270 PKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNI 329
+ +G+ + + ++ A +G+HV ++S+G+ P A + +A +
Sbjct: 95 --GASGSGSV---SSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGV 145
Query: 330 LVACSAGNSGPAPSSLSNLAPWLITVGA 357
LV ++GNSG S + VGA
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGA 173
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 4e-17
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 17/216 (7%)
Query: 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKG 201
+ + ++D F + V W + + I KG
Sbjct: 48 DPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEP-AEPITPEDYAAFQSIRDQGL--KG 104
Query: 202 FEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLA 261
E+ D + ++ H H ST+ G+ G AP R+
Sbjct: 105 KEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQE----------HSPVF-GIAPNCRVI 153
Query: 262 IYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGA 321
+ ++ AID A+ G +++ + + + +
Sbjct: 154 NMPQDAVIRGNYDDVMSP---LNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAI 210
Query: 322 LNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
+N+L+ GN+ L + P + VGA
Sbjct: 211 KKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGA 246
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+F++ G N K I APG IL A +GTSM+
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEE------------PVRLTGTSMAA 295
Query: 571 PHVAAAAALLKAIH----PDWSSAAIRSALMTTA 600
P + +ALL ++ + A+R+AL+ TA
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 329
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 4e-17
Identities = 46/190 (24%), Positives = 67/190 (35%), Gaps = 28/190 (14%)
Query: 453 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 512
GN NG S A V + ++ + N +A
Sbjct: 161 GNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINH-----------------VA 203
Query: 513 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPH 572
F+SRGP +KPD+ APG IL+A S + S + KY GTSM+ P
Sbjct: 204 QFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHD-SKYAYMGGTSMATPI 260
Query: 573 VAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATP-FSFGSGHFRPT 631
VA A L+ + +L+ AL AD + P + G G
Sbjct: 261 VAGNVAQLREHFVKNRGITPKPSLLKA-------ALIAGAADIGLGYPNGNQGWGRVTLD 313
Query: 632 KAADPGLVYD 641
K+ + V +
Sbjct: 314 KSLNVAYVNE 323
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 8e-14
Identities = 37/163 (22%), Positives = 56/163 (34%), Gaps = 23/163 (14%)
Query: 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGG-APLARLAIYKACWATPKA 272
+ D +GHGTH A +V G G+ + G AP A L
Sbjct: 58 RTNNANDTNGHGTHVAGSVLGN-------------GSTNKGMAPQANLVFQSIM------ 98
Query: 273 SKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 332
G +++ A G + + S G A+ D + K+++ +
Sbjct: 99 DSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTIL 157
Query: 333 CSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDFVGPVVLGTG 373
+AGN GP ++S A ITVGA R G
Sbjct: 158 FAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNIN 200
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 5e-17
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIV-----KYTIFSG 565
+A F+SR + APG+ IL+ S ++ + Y + G
Sbjct: 328 VAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 566 TSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
TSM+ PHV A+L P+ IR L TA
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 8e-13
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 25/149 (16%)
Query: 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKAS 273
GTH A T+A ++ + G G AP A++ A
Sbjct: 190 AGTDSSYGGSAGTHVAGTIAAKK--DGK---GIV-----GVAPGAKIMPIVIF--DDPAL 237
Query: 274 KAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVAC 333
+ + A I A G V++ S G ++ A++H +++
Sbjct: 238 VGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMVV 293
Query: 334 SAGNSGP-----APSSLSNLAPWLITVGA 357
SAGN+ P+ P +I V A
Sbjct: 294 SAGNNTSDSHHQYPAGY----PGVIQVAA 318
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 5e-17
Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 24/148 (16%)
Query: 453 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 512
GN A+ + S PA Y +++ A+ Q R
Sbjct: 182 GNDGADIRKLSAQQRIWPAA---YHPVSSVNKKQDPVIRVAAL-AQYRKGETPVLHGGGI 237
Query: 513 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPH 572
+ G N DI APG NI +A K SGTS +
Sbjct: 238 TGSRFGNN-------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAI 277
Query: 573 VAAAAALLKAIHPDWSSAAIRSALMTTA 600
V+ A + + +P ++ ++ L+ +A
Sbjct: 278 VSGVLAAMTSCNPRATATELKRTLLESA 305
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 25/140 (17%)
Query: 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKAS 273
+ + HGT AS +A R G G P A ++ +
Sbjct: 79 PVKKSEALYIHGTAMASLIASR--------YGIY-----GVYPHALISSRRVI-----PD 120
Query: 274 KAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTN---QPFAFNRDGIAIGALNAVKHNIL 330
+ + + + +++IS G + ++ L
Sbjct: 121 GVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRL 176
Query: 331 VACSAGNSGPAPSSLSNLAP 350
+ + GN G LS
Sbjct: 177 IVAAVGNDGADIRKLSAQQR 196
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-16
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 26/95 (27%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+++FT+ + DI APG+ I + + ++ Y SGT+M+
Sbjct: 215 LSDFTNTNE--------EIDIVAPGVGIKSTYLDSG-------------YAELSGTAMAA 253
Query: 571 PHVAAAAALLKAIHPD-----WSSAAIRSALMTTA 600
PHVA A AL+ + D S I + L+ A
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRA 288
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 8e-13
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 33/159 (20%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
+ D+ + D +GHGTH A TVA G G AP A L I KA
Sbjct: 72 DYGGDETNFSDNNGHGTHVAGTVAA---------AETGSGVV-GVAPKADLFIIKAL--- 118
Query: 270 PKASKAAGNTCFEADMLAAIDDAI------RDGVHVLSISIGTNQPFAFNRDGIAIGALN 323
+ +G + AI A+ + + ++++S+G D +
Sbjct: 119 --SGDGSGEM---GWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----Y 169
Query: 324 AVKHNILVACSAGNSGPAPSSLSNL-----APWLITVGA 357
AV +N+ V C+AGN G + +I VGA
Sbjct: 170 AVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGA 208
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 40/240 (16%), Positives = 70/240 (29%), Gaps = 69/240 (28%)
Query: 122 AKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGV 181
+ + + + G + +VD GV + K G
Sbjct: 9 SSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAG-------KVVGGW----- 56
Query: 182 AFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNAS 241
+ ++D +P++ +GHGTH A A
Sbjct: 57 ----------------------------DFVDNDSTPQNGNGHGTHCAGIAAAV------ 82
Query: 242 AFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 301
+ G A G AP A + + + + I A G V+S
Sbjct: 83 --TNNSTGIA-GTAPKASILAVRVL--------DNSGSGTWTAVANGITYAADQGAKVIS 131
Query: 302 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPA----PSSLSNLAPWLITVGA 357
+S+G + + + A +V +AGN+G P+ SN I V +
Sbjct: 132 LSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNAGNTAPNYPAYYSN----AIAVAS 183
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 23/90 (25%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
++F++ G D+ APG +I + + ++ Y SGTSM+
Sbjct: 190 KSSFSTYGSWV--------DVAAPGSSIYSTYPTST-------------YASLSGTSMAT 228
Query: 571 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
PHVA A LL + S++ IR+A+ TA
Sbjct: 229 PHVAGVAGLLAS--QGRSASNIRAAIENTA 256
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
+ ++D P D++ HGTH A A A A G A G AP R+ +A
Sbjct: 58 DFVDNDYDPMDLNNHGTHVAGIAA--------AETNNATGIA-GMAPNTRILAVRAL--- 105
Query: 270 PKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNI 329
+ +D+ AI A G V+++S+G + + + A
Sbjct: 106 -----DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGS 156
Query: 330 LVACSAGNSGPA----PSSLSNLAPWLITVGA 357
+V +AGN+G + P+S N +I VGA
Sbjct: 157 VVVAAAGNNGSSTTFEPASYEN----VIAVGA 184
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 23/90 (25%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+A+F++ G D+ APG++I++ + Y SGTSM+
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIVSTITGNR-------------YAYMSGTSMAS 229
Query: 571 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
PHVA AALL + + IR A+ TA
Sbjct: 230 PHVAGLAALLASQGRNN--IEIRQAIEQTA 257
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 7e-15
Identities = 51/383 (13%), Positives = 102/383 (26%), Gaps = 122/383 (31%)
Query: 18 SAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFS 77
++ Y V + + K + ++ + +Y+ ++
Sbjct: 39 FQGSEELYYSVEYKNTATFNKLV------------------KKKSLNVVYNIP-ELHVAQ 79
Query: 78 AVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLS 137
+T A L+ + + Y + + + ++ + + + + W+ + + S
Sbjct: 80 IKMTKMHANALANYKNDIK-YINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGAS 138
Query: 138 KARY--GQDVIVGLVDNGV-----------WPESKSFSDEGMGPVPKSWKGICQTGVAFN 184
+ + ++D GV +SK+ G T
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVP---------LNGFRGTEPEET 189
Query: 185 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFG 244
D D GHGT + + G
Sbjct: 190 G----------------------------DVHDVNDRKGHGTMVSGQTSAN--------G 213
Query: 245 GFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304
G AP + +Y+ + AI A DG V++IS+
Sbjct: 214 KLI-----GVAPNNKFTMYRVF---------GSKKTELLWVSKAIVQAANDGNQVINISV 259
Query: 305 GTNQPFAFNRDGIAIG-----------ALN-AVKHNILVACSAGNSGPAPSSLSNLA--- 349
G+ N A+N A K +V +AGN G + L
Sbjct: 260 GSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQR 319
Query: 350 ---------------PWLITVGA 357
++TVG+
Sbjct: 320 EYQGNGEVKDVPASMDNVVTVGS 342
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 2e-14
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 17/100 (17%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIV---------KYT 561
++ F++ G N DI APG + +Y
Sbjct: 349 LSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 562 IFSGTSMSCPHVAAAAALLKA-IHPDWSSAAIRSALMTTA 600
+GT+++ P V+ A AL+ H + L
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHG 441
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 2e-14
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 506 QPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSG 565
QP T+ G D+ APG +I+ A S+ S+ + SG
Sbjct: 192 QPVTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCST-----------CFVSQSG 232
Query: 566 TSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
TS + HVA AA++ + P+ + A +R L+ +
Sbjct: 233 TSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 4e-08
Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 43/168 (25%)
Query: 201 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 260
+ + T R D HGTH A V+GR G A A +
Sbjct: 51 TDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA---------------GVAKGASM 95
Query: 261 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH------VLSISIGTNQPFAFNR 314
+ K + + L ++ + + V+ + + N
Sbjct: 96 RSLRVLNCQGKGT--------VSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNA 147
Query: 315 DGIAIGALNAVKHNILVACSAGNSGP-----APSSLSNLAPWLITVGA 357
A + +++ +AGN +P+S AP +ITVGA
Sbjct: 148 ---ACQ--RLARAGVVLVTAAGNFRDDACLYSPAS----APEVITVGA 186
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589
DI APG +I ++W ++S SGTSM+ PHVA AAL +P+ S
Sbjct: 198 DIYAPGSSITSSWYTSNS-----------ATNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 590 AAIRSALMTTA 600
A + + L T A
Sbjct: 247 AQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 8e-09
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 39/155 (25%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
+ ++D D +GHGTH A T+ G G A + + +
Sbjct: 58 DFIDNDYDATDCNGHGTHVAGTIGGSTY---------------GVAKNVNVVGVRVLNCS 102
Query: 270 PKASKAAGNTCFEADMLAAIDDAIRDGV--HVLSISIGTNQPFAFNRDGIAIGALNAVKH 327
S + ++A I+ + V ++S+G A + A+ AV
Sbjct: 103 GSGS--------NSGVIAGINWVKNNASGPAVANMSLGGGASQATDD---AVN--AAVAA 149
Query: 328 NILVACSAGNSGP-----APSSLSNLAPWLITVGA 357
I +AGN +P+ A ITVG+
Sbjct: 150 GITFVVAAGNDNSNACNYSPAR----AADAITVGS 180
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 8e-14
Identities = 54/326 (16%), Positives = 89/326 (27%), Gaps = 79/326 (24%)
Query: 53 SVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRS 112
+Y +K I + + +L ++ V V H + L S
Sbjct: 14 FNPHEVLGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDH--QAVLLGKPS 70
Query: 113 WEFVGLDEVAKQN-WNHFNMGQDLLSKARY--GQDVIVGLVDNGVWPESKSFSDEGMGPV 169
W G + A+ W + + + V ++D
Sbjct: 71 WLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLD------------------ 112
Query: 170 PKSWKGICQTGVAFN-SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 228
TGV ++ L + R D +GHGTH
Sbjct: 113 ---------TGVDYDHPDLAANIAWCVSTL---------RGKVSTKLRDCADQNGHGTHV 154
Query: 229 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKAC----------------WATPKA 272
T+A G G AP ++ + A
Sbjct: 155 IGTIAAL---------NNDIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 204
Query: 273 SKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 332
A D D V+S+S+G ++ D I A I++
Sbjct: 205 DGVADKDGDGIIAGDPDD----DAAEVISMSLGGPADDSYLYDMII----QAYNAGIVIV 256
Query: 333 CSAGNSGP-APSSLSNLAPWLITVGA 357
++GN G +PS + P +I VGA
Sbjct: 257 AASGNEGAPSPSYPAA-YPEVIAVGA 281
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 36/103 (34%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+A+F++R P +++APG++IL+ + + Y GT+M+
Sbjct: 288 IASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMAT 324
Query: 571 PHVAAAAALLKAIH-------------PDWSSAAIRSALMTTA 600
PHV+ AL++A + D S +R L TA
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 367
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589
D+ APG +I +AW + + +GTSM+ PHVA AAL +P +
Sbjct: 196 DLFAPGASIPSAWYTSDT-----------ATQTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 590 AAIRSALMTTA 600
A++ SA++ A
Sbjct: 245 ASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 39/150 (26%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
+ +D +GHGTH A T+ G G A L + S
Sbjct: 61 GGNGQDCNGHGTHVAGTIGGVTY---------------GVAKAVNLYAVRVLDCNGSGST 105
Query: 275 AAGNTCFEADMLAAIDDAIRDGVH--VLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 332
+ ++A +D R+ V ++S+G A + A+ N++ ++ A
Sbjct: 106 --------SGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDN---AVK--NSIAAGVVYA 152
Query: 333 CSAGNSGP-----APSSLSNLAPWLITVGA 357
+AGN +P+ +TVGA
Sbjct: 153 VAAGNDNANACNYSPAR----VAEALTVGA 178
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589
D+ APG I +AW + Y SGTSM+ PHVA AAL + +
Sbjct: 196 DLFAPGSQIKSAWYDGG-------------YKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 590 AAIRSALMTTA 600
+ L + A
Sbjct: 243 LQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 39/155 (25%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
+ ++D D +GHGTH A T+ G + G A + + +
Sbjct: 56 DFVDNDADSSDCNGHGTHVAGTIGGSQY---------------GVAKNVNIVGVRVLSCS 100
Query: 270 PKASKAAGNTCFEADMLAAIDDAIRDGV--HVLSISIGTNQPFAFNRDGIAIGALNAVKH 327
+ + +++ +D ++ V ++S+G Q A + A+ A++
Sbjct: 101 GSGTT--------SGVISGVDWVAQNASGPSVANMSLGGGQSTALDS---AVQ--GAIQS 147
Query: 328 NILVACSAGNSGP-----APSSLSNLAPWLITVGA 357
+ +AGNS +P+ P +TVG+
Sbjct: 148 GVSFMLAAGNSNADACNTSPAR----VPSGVTVGS 178
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 36/103 (34%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
+A+F++R P +++APG++IL+ + + Y GT+M+
Sbjct: 213 IASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMAT 249
Query: 571 PHVAAAAALLKAIH-------------PDWSSAAIRSALMTTA 600
PHV+ AL++A + D S +R L TA
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 292
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 36/165 (21%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKAC--- 266
+ R D +GHGTH T+A G G AP ++ +
Sbjct: 61 KVSTKLRDCADQNGHGTHVIGTIAAL---------NNDIGVV-GVAPGVQIYSVRVLDAR 110
Query: 267 -------------WATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFN 313
A A D D V+S+S+G ++
Sbjct: 111 GSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDD----DAAEVISMSLGGPADDSYL 166
Query: 314 RDGIAIGALNAVKHNILVACSAGNSGP-APSSLSNLAPWLITVGA 357
D I A I++ ++GN G +PS + P +I VGA
Sbjct: 167 YDMII----QAYNAGIVIVAASGNEGAPSPSYPAA-YPEVIAVGA 206
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 4e-13
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589
D+ APG +I+ A S+ S+ + SGTS + HVA AA++ + P+ +
Sbjct: 360 DLFAPGEDIIGASSDCST-----------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 590 AAIRSALMTTA 600
A +R L+ +
Sbjct: 409 AELRQRLIHFS 419
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 1e-12
Identities = 52/343 (15%), Positives = 94/343 (27%), Gaps = 93/343 (27%)
Query: 26 YIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEA 85
Y+V ++ H Q + L + L+ + + GF ++ D
Sbjct: 78 YVVVL------KEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLL 131
Query: 86 ARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDV 145
+L V + + + W L+ + D G V
Sbjct: 132 ELALKLPHVDYI---EEDSSVFAQSIPW---NLERI-----TPPRYRADEYQPPDGGSLV 180
Query: 146 IVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQL 205
V L+D + + + EG +
Sbjct: 181 EVYLLDTSIQSDHREI--EG----------------------------RVMV---TDFEN 207
Query: 206 YGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKA 265
+ T R D HGTH A V+GR G A A + +
Sbjct: 208 VPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA---------------GVAKGASMRSLRV 252
Query: 266 CWATPKASKAAGNTCFEADMLAAIDDAIRDGVH------VLSISIGTNQPFAFNRDGIAI 319
K + + L ++ + + V+ + + N A
Sbjct: 253 LNCQGKGT--------VSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNA---AC 301
Query: 320 GALNAVKHNILVACSAGNSGP-----APSSLSNLAPWLITVGA 357
+ +++ +AGN +P+S AP +ITVGA
Sbjct: 302 Q--RLARAGVVLVTAAGNFRDDACLYSPAS----APEVITVGA 338
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 511 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 570
A+F++ G + D+ APG +IL+ + Y+ +GTSM+
Sbjct: 234 RASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSD------AYSFMAGTSMAT 279
Query: 571 PHVAAAAALLKA----IHPDWSSAAIRSALMTTA 600
PHV+ AAL+ + ++ + + A ++ L++T
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTT 313
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 44/254 (17%), Positives = 89/254 (35%), Gaps = 59/254 (23%)
Query: 126 WNHFNMGQDLLSKA----RYGQDVIVGLVDNGVW--PESKSFSDEGMGPVPKSWKG---I 176
W++F+ K GQ+V+V +VD G+ + G I
Sbjct: 11 WHYFDRYGVKADKVWDMGFTGQNVVVAVVDTGILHHRDLN----------ANVLPGYDFI 60
Query: 177 CQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRR 236
+ ++ + + + + + + D HG+H A T+A
Sbjct: 61 SNSQISLD----GDGRDADPFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIA--- 113
Query: 237 VPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI--- 293
A G A G A A++ +A + G +D+ + A
Sbjct: 114 -----AVTNNRIGVA-GVAYGAKVVPVRA------LGRCGGYD---SDISDGLYWAAGGR 158
Query: 294 -------RDGVHVLSISIGTNQPFAFN-RDGIAIGALNAVKHNILVACSAGNSGP--APS 343
R+ V+++S+G++ ++N + I A + LV +AGN + +
Sbjct: 159 IAGIPENRNPAKVINMSLGSDGQCSYNAQTMID----RATRLGALVVVAAGNENQNASNT 214
Query: 344 SLSNLAPWLITVGA 357
++ +++VGA
Sbjct: 215 WPTS-CNNVLSVGA 227
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589
DI APG +I + W SGTSM+ PH+A AA L + S+
Sbjct: 201 DIFAPGTSITSTWIGGR-------------TNTISGTSMATPHIAGLAAYLFGLEGG-SA 246
Query: 590 AAIRSALMTTA 600
A+ + T +
Sbjct: 247 GAMCGRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 44/153 (28%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
+ RD GHGTH A T+ + G A + K +
Sbjct: 63 TARDGHGHGTHCAGTIGSKTW---------------GVAKKVSIFGVKVL-----DDSGS 102
Query: 277 GNTCFEADMLAAIDDAIRDGVH-------VLSISIGTNQPFAFNRDGIAIGALNAVKHNI 329
G+ ++++A +D D V S+S+G A N+ A +
Sbjct: 103 GSL---SNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQ---AAAR--LQSSGV 154
Query: 330 LVACSAGNSGP-----APSSLSNLAPWLITVGA 357
VA +AGN +P+S P + TVGA
Sbjct: 155 FVAVAAGNDNRDAANTSPAS----EPTVCTVGA 183
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 589
DI PG +IL+ W S SGTSM+ PHVA AA L + ++
Sbjct: 200 DIFGPGTDILSTWIGGS-------------TRSISGTSMATPHVAGLAAYLMTLGKT-TA 245
Query: 590 AAIRSALMTTA 600
A+ + TA
Sbjct: 246 ASACRYIADTA 256
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 37/160 (23%), Positives = 55/160 (34%), Gaps = 47/160 (29%)
Query: 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 269
R D +GHGTH A TV R G A +L K
Sbjct: 58 TYYYSSR---DGNGHGTHCAGTVGSRTY---------------GVAKKTQLFGVKVL--- 96
Query: 270 PKASKAAGNTCFEADMLAAIDDAIRDGVH-------VLSISIGTNQPFAFNRDGIAIGAL 322
+G + ++A +D D + V S+S+G + N A
Sbjct: 97 --DDNGSGQY---STIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNS---AAAR- 147
Query: 323 NAVKHNILVACSAGNSGP-----APSSLSNLAPWLITVGA 357
++VA +AGN+ +P+S P + TVGA
Sbjct: 148 -LQSSGVMVAVAAGNNNADARNYSPAS----EPSVCTVGA 182
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 1e-06
Identities = 108/732 (14%), Positives = 202/732 (27%), Gaps = 253/732 (34%)
Query: 42 EIQETHHSY--LLSV-----------KDNEEEARA-------SHLYSYKHSING----FS 77
E E + Y +LSV KD ++ ++ H+ K +++G F
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 78 AVLTPDEAARLSELEEVVSV-Y-------------PSHPEK-YSLQTTRSWEFVGLDEVA 122
+L+ E +EEV+ + Y PS + Y Q R + A
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFA 127
Query: 123 KQNWN---HFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQT 179
K N + + + L + R ++V++ +G+ K+W
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLI----------------DGVLGSGKTW------ 165
Query: 180 GVAFNSSLCNKKIIGAR----YYLKGFEQLYGPLNATEDDRSP-----RDMDGHGTHTAS 230
VA + K+ ++L N+ E +D + T +
Sbjct: 166 -VA-LDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 231 TVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 290
+ ++ S L + Y+ C L +
Sbjct: 219 HSSNIKLRIHSIQAELRR--------LLKSKPYENC-------------------LLVLL 251
Query: 291 DAIRDGVHVLSISIGTNQPFAFN-------RDGIAIGALNA--VKHNILVACSAGNSGPA 341
+ +++ F + R L+A H L S +
Sbjct: 252 N-VQNAKAW--------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--P 300
Query: 342 PSSLSNLAPWLITVGAGSLDRDFVG--PVVLGTGMEIIGKTVTP----------YNLKKM 389
S L +L L R+ + P L II +++ N K+
Sbjct: 301 DEVKSLLLKYL-DCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKL 355
Query: 390 HPLVYAA-DVVVPGVHQNETNQCLPGSLTPEKVKGKI---VLCMRGSGFKLSKGMEV--- 442
++ ++ +V+ P ++ ++ S+ P I +L + S M V
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRL---SVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 443 --KRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQAR 500
K L+ E + +P+ +Y + +K+ +
Sbjct: 411 LHKY----SLVEKQP----KESTI---SIPS---IYLE-LKVKL-------------ENE 442
Query: 501 TVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKY 560
LH +D Y NI + ++ D+ +
Sbjct: 443 YALHRS--------------IVDHY-----------NIPKTF-DSDDLIPPYLDQYFYSH 476
Query: 561 TIFSGTSMSCPHVAAA-----AALLKAIHPD--WSSAAIRSALMTTAWMKNNKALPITNA 613
H+ L + + D + IR +TAW NA
Sbjct: 477 IGH--------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHD--STAW----------NA 516
Query: 614 DGSIA---TPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPP 670
GSI F + DP Y+ L +L N +
Sbjct: 517 SGSILNTLQQLKFYKPYICDN---DP--KYERLVNAILDFLPKIE---EN-LICSKYTDL 567
Query: 671 SALNLNYPSIAI 682
+ L AI
Sbjct: 568 LRIALMAEDEAI 579
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 560 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
GTS + P A LL +P+ + ++ + +A
Sbjct: 265 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSA 305
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 13/67 (19%), Positives = 24/67 (35%)
Query: 560 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 619
+GTS S P A AL + + + ++ ++ T+ + A
Sbjct: 254 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 313
Query: 620 PFSFGSG 626
S+G G
Sbjct: 314 SHSYGYG 320
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 777 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.83 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.94 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.85 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.8 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.74 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.53 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.52 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.23 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.67 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 96.04 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.59 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 95.41 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 93.71 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 90.39 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.54 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 88.18 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 87.96 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 82.55 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-119 Score=1045.28 Aligned_cols=623 Identities=39% Similarity=0.649 Sum_probs=559.7
Q ss_pred cCCcccccccchhhhcccCccccccccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccc
Q 004047 109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLC 188 (777)
Q Consensus 109 ~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~ 188 (777)
|+++|+|+||... . .+|..+.+|+||+|||||||||++||+|.+.+++++|..|+|.|+.|.+|+...|
T Consensus 1 Tt~s~~flgl~~~-----~------~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~c 69 (649)
T 3i6s_A 1 TTHTSDFLKLNPS-----S------GLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMC 69 (649)
T ss_dssp CCSHHHHTTCCSS-----S------SHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSC
T ss_pred CCCChHHcCCCCc-----h------hhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCcccccccc
Confidence 5789999999742 3 7999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecC
Q 004047 189 NKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA 268 (777)
Q Consensus 189 n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~ 268 (777)
|+|++++++|.+++.... .+...+..+++|..||||||||||||+.+++.+++ |++.|.++||||+|+|++||+|+.
T Consensus 70 N~kiig~~~f~~~~~~~~--~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~-G~~~g~~~GvAP~A~l~~~kv~~~ 146 (649)
T 3i6s_A 70 NRKLIGANYFNKGILAND--PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHF-GYAPGTARGVAPRARLAVYKFSFN 146 (649)
T ss_dssp CSSEEEEEECCHHHHHHC--TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEET-TEEEEEECCSSTTCEEEEEECEET
T ss_pred ccceeeeEeccCcccccc--cccccCCCCCCCCCCcHHHHHHHHhCCCCcCcccc-ccccCceeEECCCCEEEEEeccCC
Confidence 999999999987765432 22234556788999999999999999988888877 888888999999999999999998
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCC
Q 004047 269 TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 348 (777)
Q Consensus 269 ~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ 348 (777)
. | +..+++++||+||+++|+||||||||.. ...+..+++.+++++|.++||+||+||||+|+...++.+.
T Consensus 147 ~--g-------~~~~~i~~Ai~~A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ 216 (649)
T 3i6s_A 147 E--G-------TFTSDLIAAMDQAVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNG 216 (649)
T ss_dssp T--E-------ECHHHHHHHHHHHHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCC
T ss_pred C--C-------CCHHHHHHHHHHHHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCC
Confidence 6 5 8999999999999999999999999983 5567789999999999999999999999999999999999
Q ss_pred CcceeeeccCccccccccceEeCCCcEEEeeeeccCCC-CcceeeEEecccccCCcCcCCCCCCCCCCCCCCcc--cceE
Q 004047 349 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNL-KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKV--KGKI 425 (777)
Q Consensus 349 ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~g~i 425 (777)
+||+|+|||++.+|.|...+.+++++++.|++++.... ...+|+++.. ....|.+..+++.++ +|||
T Consensus 217 ap~vitVgAst~dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkI 286 (649)
T 3i6s_A 217 SPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK----------TLSDCSSEELLSQVENPENTI 286 (649)
T ss_dssp CTTSEEEEEEECSCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCE
T ss_pred CCceEEEeeeecccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc----------cccccccccccccccccCCcE
Confidence 99999999999999999999999999999999987654 5678888865 356899988888877 9999
Q ss_pred EEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeec
Q 004047 426 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHT 505 (777)
Q Consensus 426 vl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~ 505 (777)
|+|+|+.+.+.+|..+++++|+.|+|++|+. .....+.+.+|..+|+..+|+.|++|++++.+++++|.+..+..+.
T Consensus 287 vlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~ 363 (649)
T 3i6s_A 287 VICDDNGDFSDQMRIITRARLKAAIFISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDT 363 (649)
T ss_dssp EEECCCSCHHHHHHHHHHHTCSEEEEECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCC
T ss_pred EEEeCCCccHHHHHHHHHhcCceEEEEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeecc
Confidence 9999999999999999999999999999986 4556677899999999999999999999999999999999999888
Q ss_pred CCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCc-ccccceeeccccchhhHHHHHHHHHHHHC
Q 004047 506 QPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDK-RIVKYTIFSGTSMSCPHVAAAAALLKAIH 584 (777)
Q Consensus 506 ~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 584 (777)
...+.++.||||||+...+++|||||+|||++|+++|+....+.....+. +...|..|||||||||||||++|||||+|
T Consensus 364 ~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~ 443 (649)
T 3i6s_A 364 KPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAH 443 (649)
T ss_dssp SSCCEECTTSCCSSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCcccccCCCCCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhC
Confidence 89999999999999997789999999999999999999865544333332 44789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCCcccCC-CCCCCCCCceeeeccCccccCCCCceeeCchhhHHHhhhcCCCCCC----
Q 004047 585 PDWSSAAIRSALMTTAWMKNNKALPITNA-DGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFT---- 659 (777)
Q Consensus 585 P~~s~~~ik~~L~~TA~~~~~~g~~~~~~-~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~---- 659 (777)
|+|+|++||++||+||+++++.+.++.+. .+.+++++.||+|+||+.+|++||||||++.+||++|||++||+.+
T Consensus 444 P~~Spa~IksaLmtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~ 523 (649)
T 3i6s_A 444 PEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKT 523 (649)
T ss_dssp TTCCHHHHHHHHHHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHH
T ss_pred CCCCHHHHHHHHhcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCccccee
Confidence 99999999999999999999999998875 5678899999999999999999999999999999999999999876
Q ss_pred --CCccc--CCCCCCCCCCCCCCeeEeec-CCce-----EEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccC
Q 004047 660 --NPVFR--CPNKPPSALNLNYPSIAIPN-LNGT-----VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHI 729 (777)
Q Consensus 660 --~~~~~--~~~~~~~~~~ln~ps~~~~~-~~~~-----~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~ 729 (777)
+..+. |+. ...+||||||+++. +.+. ++|+|||||||....+|++.++.|.|++|+|+|++|+|.+.
T Consensus 524 ~~~~~~~~~C~~---~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~ 600 (649)
T 3i6s_A 524 IARSSASHNCSN---PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNK 600 (649)
T ss_dssp HHTTTSCC-CCC---CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-
T ss_pred eecCCCcCCCCC---chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecC
Confidence 45556 985 45799999999987 5666 89999999999989999999999999999999999999989
Q ss_pred CcEEEEEEEEEECcccccccCCCceEEEEEEEEC--CccEEEeeEEEEe
Q 004047 730 GQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTD--GLHLVRSPMAVSF 776 (777)
Q Consensus 730 ~~~~~~~v~~~~~~~~~~~~~~~~~~~G~~~~~~--~~~~v~~P~~~~~ 776 (777)
+|+++|+|||+.. ....+.|.||+|+|+| +.|.||+||+|++
T Consensus 601 ~~~~~f~v~~~~~-----~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~ 644 (649)
T 3i6s_A 601 NEKQSYTLTIRYI-----GDEGQSRNVGSITWVEQNGNHSVRSPIVTSP 644 (649)
T ss_dssp CCEEEEEEEEEEC-----CC---CCCEEEEEEEETTSCCEEEEEEEEEE
T ss_pred CCEEEEEEEEEec-----ccCCCceEEEEEEEEcCCCCeEEEEeEEEEE
Confidence 9999999999984 3446678999999999 8999999999986
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-109 Score=966.68 Aligned_cols=609 Identities=40% Similarity=0.717 Sum_probs=517.9
Q ss_pred cCCcccccccchhhhcccCccccccccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccc
Q 004047 109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLC 188 (777)
Q Consensus 109 ~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~ 188 (777)
|+++|+|+||++ .+|.+..+|+||+|||||||||++||+|+|+++++++..|+|.|+.+.+| .|
T Consensus 1 tt~s~~flGl~~-------------~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~---~~ 64 (621)
T 3vta_A 1 TTRSWDFLGFPL-------------TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF---RC 64 (621)
T ss_dssp CCSHHHHTTCCT-------------TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSC---CC
T ss_pred CCCChhHcCCCc-------------cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCc---cc
Confidence 578999999974 57888899999999999999999999999999999999999999998877 59
Q ss_pred cceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecC
Q 004047 189 NKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA 268 (777)
Q Consensus 189 n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~ 268 (777)
|+|++|+++|..+.... ..+..+++|++||||||||||||+..++.+.. |...+.++||||+|+|++||+|++
T Consensus 65 n~k~ig~~~~~~~~~~~------~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~-g~~~g~~~GvAP~A~l~~~kv~~~ 137 (621)
T 3vta_A 65 NRKIIGARSYHIGRPIS------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLY-GLGLGTARGGVPLARIAAYKVCWN 137 (621)
T ss_dssp CSSEEEEEECCCSSSCC------TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEET-TEEEEEECCSCTTSEEEEEECEET
T ss_pred CcceeeeeecccCCccC------CCCCCCCCCCCcCHHHHHHHHhCcCCCCcccc-ccccccEEEECCCCEEEEEEeecC
Confidence 99999999998764332 23445788999999999999999987777776 777788999999999999999998
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCC
Q 004047 269 TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 348 (777)
Q Consensus 269 ~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ 348 (777)
. | |..+++++||++|+++|+||||||||+.....+..+++++++++|.++||+||+||||+|+...++.+.
T Consensus 138 ~--g-------~~~~di~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~ 208 (621)
T 3vta_A 138 D--G-------CSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208 (621)
T ss_dssp T--E-------ECHHHHHHHHHHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCC
T ss_pred C--C-------CCHHHHHHHHHHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCC
Confidence 7 5 889999999999999999999999999656667788999999999999999999999999999999999
Q ss_pred CcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEE
Q 004047 349 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLC 428 (777)
Q Consensus 349 ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~ 428 (777)
+||+++|++++.++.+...+.++++..+.+.++.... ...++++.+.+.............|.+..+++.+++|||++|
T Consensus 209 a~~~~~v~ast~d~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~ 287 (621)
T 3vta_A 209 SPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC 287 (621)
T ss_dssp CTTSEEEEEECCSEEEEEEEEETTSCEEEEBCCCCSC-CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEEC
T ss_pred CCCceeEEEeeccccceeeEEeccCceeeeeecccCC-CcccccccccccccccccccccccccccccccccccceEEEE
Confidence 9999999999999999999999999999988876543 456777777766555445556678999999999999999999
Q ss_pred ecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCC
Q 004047 429 MRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPA 508 (777)
Q Consensus 429 ~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 508 (777)
+++. ..+.......|+.+++++++... ..+.+.+|...++..++..+..|+..+..+.+.+....+. .....
T Consensus 288 ~~~~---~~~~~~~~~~Ga~gvi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~ 359 (621)
T 3vta_A 288 EASF---GPHEFFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASA 359 (621)
T ss_dssp SSCC---CHHHHHHHHTTCSEEEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTC
T ss_pred ecCC---ChhHHhhhhcceeEEEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCC
Confidence 8753 45666778899999999987543 3456789999999999999999999999988888665544 45668
Q ss_pred CccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCC
Q 004047 509 PFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 588 (777)
Q Consensus 509 ~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 588 (777)
+.++.||||||+...++++||||+|||++|+|+++...... .......|..|||||||||||||++|||||+||+|+
T Consensus 360 ~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~---~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~s 436 (621)
T 3vta_A 360 PVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWS 436 (621)
T ss_dssp CCBCTTSCCCSCTTCTTSCSCCEEEECSSEEEECCSSSCBT---TBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CceeeecCCCCCCCCCCeeccccccCCcceEeecCcccccc---CcCCCCcceEecCccccchhhhhHHHHHHHHCCCCC
Confidence 89999999999987789999999999999999998644322 122346899999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCCCceeeCchhhHHHhhhcCCCCCC------CCc
Q 004047 589 SAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFT------NPV 662 (777)
Q Consensus 589 ~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~------~~~ 662 (777)
|++||++||+||++++..+ .++.+++||+|+||+.+|++||||||+...||+.|||+++|+++ +..
T Consensus 437 pa~IksaLmtTA~~~~~~~--------~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~ 508 (621)
T 3vta_A 437 PAAIKSALMTTASPMNARF--------NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDY 508 (621)
T ss_dssp HHHHHHHHHHTCBCCCTTT--------CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC--------------------
T ss_pred HHHHHHHHHhcCCcccccC--------CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccc
Confidence 9999999999999887653 45678999999999999999999999999999999999999877 344
Q ss_pred ccCCCCC-CCCCCCCCCeeEee---cCCceEEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEE
Q 004047 663 FRCPNKP-PSALNLNYPSIAIP---NLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTIT 738 (777)
Q Consensus 663 ~~~~~~~-~~~~~ln~ps~~~~---~~~~~~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~ 738 (777)
..|+... ....+||||||++. ++..+++|+|||||+|....+|++++++|.|++|+|+|++|+|++.+|+++|+||
T Consensus 509 ~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt 588 (621)
T 3vta_A 509 SACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT 588 (621)
T ss_dssp ---------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEE
T ss_pred cccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEE
Confidence 5676542 34679999999985 5667899999999999999999999999999999999999999989999999999
Q ss_pred EEECcccccccCCCceEEEEEEEECCccEEEeeEEEEe
Q 004047 739 VRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSF 776 (777)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~~P~~~~~ 776 (777)
|+. ..++.|+||+|+|+|+.|.||+||+|+.
T Consensus 589 ~~~-------~~~~~~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 589 VRG-------SIKGFVVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp EEE-------CCCSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred EEe-------cCCCceEEEEEEEEcCCEEEEeCEEEEE
Confidence 987 3578899999999999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-82 Score=771.01 Aligned_cols=542 Identities=23% Similarity=0.273 Sum_probs=428.1
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCcc----------ccccccceeeeeeecccccc
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAF----------NSSLCNKKIIGARYYLKGFE 203 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f----------~~~~~n~kiig~~~~~~~~~ 203 (777)
.+|..+++|+||+|||||||||++||+|.+. ..|++.|..+..| ....||+|++++++|.++.
T Consensus 8 ~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~- 80 (926)
T 1xf1_A 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG- 80 (926)
T ss_dssp HHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS-
T ss_pred HHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC-
Confidence 7999999999999999999999999999853 4677777644332 1347999999999987631
Q ss_pred cccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHH
Q 004047 204 QLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEA 283 (777)
Q Consensus 204 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~ 283 (777)
...|+.||||||||||||+...+.+. .+.+.||||+|+|++||+|++...+ +..+
T Consensus 81 -------------~~~D~~gHGThVAgiiAg~~~~~~~~-----~~~~~GvAP~A~l~~~kv~~~~g~~-------~~~~ 135 (926)
T 1xf1_A 81 -------------KTAVDQEHGTHVSGILSGNAPSETKE-----PYRLEGAMPEAQLLLMRVEIVNGLA-------DYAR 135 (926)
T ss_dssp -------------CCCCSSTTTTHHHHSSCCCCCCCCSC-----SCCTTTTCTTSEEEEEECCCCSCHH-------HHHH
T ss_pred -------------CCCCCCCcHHHHHHHHhCCCccCccc-----CCceEEECCCCEEEEEEeecCCCCC-------CcHH
Confidence 12288999999999999986543321 2456899999999999999876222 5567
Q ss_pred HHHHHHHHHHhCCceEEEeecCCCCC-CCCCccHHHHHHHHHHhCCcEEEEecCCCCCC-------------CCCCcCC-
Q 004047 284 DMLAAIDDAIRDGVHVLSISIGTNQP-FAFNRDGIAIGALNAVKHNILVACSAGNSGPA-------------PSSLSNL- 348 (777)
Q Consensus 284 ~i~~ai~~a~~~gvdVIn~SlG~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~-------------~~~~~~~- 348 (777)
++++||+||+++|+||||||||+... .....+++..+++.|.++||+||+||||+|+. ..++.++
T Consensus 136 ~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA 215 (926)
T 1xf1_A 136 NYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPA 215 (926)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCT
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcc
Confidence 89999999999999999999998432 34566788899999999999999999999963 2344555
Q ss_pred -CcceeeeccCccccccccceEe-CCCcEEEeeeecc---CCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccc
Q 004047 349 -APWLITVGAGSLDRDFVGPVVL-GTGMEIIGKTVTP---YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKG 423 (777)
Q Consensus 349 -ap~vitVgAs~~~~~~~~~~~~-~~~~~~~g~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 423 (777)
+||+|+|||++.++.+...+.+ +++....+.++.. ......+++++... .|.+..+ .+++|
T Consensus 216 ~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~G 281 (926)
T 1xf1_A 216 AADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKG 281 (926)
T ss_dssp TTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTT
T ss_pred cCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCC
Confidence 6999999999999999888887 5554444444432 22356788888654 3766555 68999
Q ss_pred eEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc-cccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEE
Q 004047 424 KIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTV 502 (777)
Q Consensus 424 ~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~ 502 (777)
|||||+|+.|.+.+|..+++.+|+.|+|++|+...... .......+|..+++..+|..|.+ .+..++++......
T Consensus 282 kivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~ 357 (926)
T 1xf1_A 282 KIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKV 357 (926)
T ss_dssp SEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEE
T ss_pred eEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEeccccee
Confidence 99999999999999999999999999999998654332 23456789999999999998874 45555655555545
Q ss_pred eecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHH
Q 004047 503 LHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA 582 (777)
Q Consensus 503 ~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 582 (777)
......+.++.||||||+. ++++||||+|||++|+++++. +.|..|||||||||||||++|||+|
T Consensus 358 ~~~~~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q 422 (926)
T 1xf1_A 358 LPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQK 422 (926)
T ss_dssp EECSSCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHH
T ss_pred cccCCcceeccccCCCCCC--CCccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHHHHHHHH
Confidence 6666788999999999996 799999999999999999987 6899999999999999999999965
Q ss_pred ----HCCCCCHHH----HHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCCCceeeCchhhHHHhhhcC
Q 004047 583 ----IHPDWSSAA----IRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSH 654 (777)
Q Consensus 583 ----~~P~~s~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~ 654 (777)
.||.|+|++ ||++||+||+++...+ ....+++++||+|+||+.+|+++.+ |||..
T Consensus 423 ~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~ 485 (926)
T 1xf1_A 423 QYETQYPDMTPSERLDLAKKVLMSSATALYDED------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDK 485 (926)
T ss_dssp HHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGG------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEES
T ss_pred HHhccCCCCCHHHHHHHHHHHHHhcCCCcccCC------CCccCChhccCCCccCHHHhcCCCe-----------EEEcC
Confidence 599999997 9999999999876431 1235678899999999999999855 56765
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCeeEeecCCceEEEEEEEEecCCCC--eeEEEEeeC--CCccEEEEecceEEEc---
Q 004047 655 GFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSK--SVYFFSAKP--PMGVSVKANPSILFFD--- 727 (777)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~t~~~tvtn~~~~~--~ty~~~~~~--~~g~~v~v~p~~~~~~--- 727 (777)
+++. ++|.++++....+++|||||+|+.+ .+|++++.. |.+..++|+|..|.|.
T Consensus 486 ~~~~-------------------~~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~ 546 (926)
T 1xf1_A 486 DNTS-------------------SKVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQ 546 (926)
T ss_dssp SSSC-------------------SCEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCE
T ss_pred CCCc-------------------ceeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCC
Confidence 4331 2455666667899999999999854 567777764 6788888888766554
Q ss_pred ----cCCcEEEEEEEEEECcc--c-ccccCCCceEEEEEEEE--CCcc-EEEeeEEEEe
Q 004047 728 ----HIGQKKSFTITVRLGSE--T-TRQGLTKQYVFGWYRWT--DGLH-LVRSPMAVSF 776 (777)
Q Consensus 728 ----~~~~~~~~~v~~~~~~~--~-~~~~~~~~~~~G~~~~~--~~~~-~v~~P~~~~~ 776 (777)
++||+++|+|+|+...- . +..++++.|+||+|+|+ ++.| .||+||++..
T Consensus 547 ~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 547 KITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp EEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred eEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 35999999999997410 0 11356778899999999 5555 5999999864
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-60 Score=545.70 Aligned_cols=369 Identities=29% Similarity=0.430 Sum_probs=285.9
Q ss_pred CCcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEeeeeEeEEEEEcCHHHHHHh-----------hc
Q 004047 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARL-----------SE 90 (777)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L-----------~~ 90 (777)
++-.|||.|++.. ..+...++++.+ ..+++++|+ .|+||+++++.+++++| ++
T Consensus 34 ~~~~~iV~~~~~~--------~~~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~ 97 (539)
T 3afg_A 34 QEVSTIIMFDNQA--------DKEKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQ 97 (539)
T ss_dssp CEEEEEEEESSHH--------HHHHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCC
T ss_pred CceEEEEEECCCC--------CHHHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhcccccccccc
Confidence 4457999999654 112222333332 246889997 59999999999999999 88
Q ss_pred CCCeEEEEeCCCCccccccCCcccccccchhhhcccCccccccccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCC
Q 004047 91 LEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVP 170 (777)
Q Consensus 91 ~~~V~~V~~~~~~~~~~~~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~ 170 (777)
+|+|++|+++. .+++... ..++.... .. ...+.+|..+++|+||+|||||||||++||+|.+
T Consensus 98 ~~~V~~v~~d~--~~~~~~~----~~~~~~~~----~~-~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~------- 159 (539)
T 3afg_A 98 LSGVQFIQEDY--VVKVAVE----TEGLDESA----AQ-VMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG------- 159 (539)
T ss_dssp CTTEEEEEECC--EEECC-------------------C-CBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT-------
T ss_pred CCCeeEEEecc--cccccCc----cccCCccc----cc-cCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC-------
Confidence 99999999999 7765432 12222110 00 0112789999999999999999999999999963
Q ss_pred CCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCc
Q 004047 171 KSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT 250 (777)
Q Consensus 171 ~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~ 250 (777)
++++.++|..+ ...+.|+.||||||||||+|+.. ...+.
T Consensus 160 --------------------~i~~~~d~~~~-------------~~~~~D~~gHGThVAgiiag~~~--------~~~g~ 198 (539)
T 3afg_A 160 --------------------KVIGWVDFVNG-------------KTTPYDDNGHGTHVASIAAGTGA--------ASNGK 198 (539)
T ss_dssp --------------------TEEEEEETTTC-------------CSSCCBSSSHHHHHHHHHHCCCG--------GGTTT
T ss_pred --------------------CEeeeEECCCC-------------CCCCCCCCCCHHHHHHHHhCcCc--------cCCCC
Confidence 35566666543 12567899999999999999731 12344
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC----CceEEEeecCCCCCCCCCccHHHHHHHHHHh
Q 004047 251 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----GVHVLSISIGTNQPFAFNRDGIAIGALNAVK 326 (777)
Q Consensus 251 ~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~ 326 (777)
+.||||+|+|+++|++++. | .+..+++++||+||+++ |++|||||||... .....+++..+++++.+
T Consensus 199 ~~GvAp~A~l~~~kv~~~~--g------~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~-~~~~~~~l~~ai~~a~~ 269 (539)
T 3afg_A 199 YKGMAPGAKLVGIKVLNGQ--G------SGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ-SSDGTDSLSQAVNNAWD 269 (539)
T ss_dssp TCCSCTTCEEEEEECSCTT--S------EEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCS-CCCSCSHHHHHHHHHHH
T ss_pred EEEECCCCEEEEEEeecCC--C------CcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCC-CCccchHHHHHHHHHHh
Confidence 6899999999999999876 4 46789999999999986 9999999999833 34456788899999999
Q ss_pred CCcEEEEecCCCCCCCCCCcC--CCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcC
Q 004047 327 HNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVH 404 (777)
Q Consensus 327 ~Gi~vV~aAGN~G~~~~~~~~--~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~ 404 (777)
+|++||+||||+|+...++.. ..+++|+|||++.
T Consensus 270 ~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~-------------------------------------------- 305 (539)
T 3afg_A 270 AGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK-------------------------------------------- 305 (539)
T ss_dssp TTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECT--------------------------------------------
T ss_pred cCCEEEEECCCCCCCCCcccCCccCCceEEEeeecC--------------------------------------------
Confidence 999999999999986555443 4589999998542
Q ss_pred cCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHH
Q 004047 405 QNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHE 484 (777)
Q Consensus 405 ~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 484 (777)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeec
Q 004047 485 YIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFS 564 (777)
Q Consensus 485 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 564 (777)
.+.++.||||||+. ++++||||+|||++|+++++...... ......|..++
T Consensus 306 -----------------------~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~~~s 356 (539)
T 3afg_A 306 -----------------------YDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMG----QPINDYYTAAP 356 (539)
T ss_dssp -----------------------TSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCCS----EECSSSEEEEC
T ss_pred -----------------------CcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCCC----CCCcccccccC
Confidence 24788999999987 69999999999999999986532110 01113699999
Q ss_pred cccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCCC
Q 004047 565 GTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPG 637 (777)
Q Consensus 565 GTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 637 (777)
|||||||||||++|||+|++|+|+|++||++|++||+++...+ .+++.||+|+||+.+|++..
T Consensus 357 GTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 357 GTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDE----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGG----------CSBTTTBTCBCCHHHHHTGG
T ss_pred chHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC----------CCccCccCCccCHHHHhhhc
Confidence 9999999999999999999999999999999999999875321 25678999999999999853
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-58 Score=510.57 Aligned_cols=346 Identities=25% Similarity=0.332 Sum_probs=274.3
Q ss_pred CCcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEeeeeEeEEEEEcCHHHHHHhhcCCCeEEEEeCC
Q 004047 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSH 101 (777)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~~ 101 (777)
++.+|||.||+.... .+++++. ..+++++|.. +++|+++++++++++|+++|+|++|++++
T Consensus 1 ~~~~~iV~~~~~~~~-----------~~~~~~~-------g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~ 61 (395)
T 2z2z_A 1 NTIRVIVSVDKAKFN-----------PHEVLGI-------GGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDH 61 (395)
T ss_dssp CEEEEEEEECTTTCC-----------HHHHHHT-------TCEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECC
T ss_pred CcEEEEEEECCCccH-----------HHHHHHc-------CCEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEee
Confidence 357899999987511 2233332 2468889976 99999999999999999999999999999
Q ss_pred CCccccccCCcc-----------cccccchhhhcccCccccccccccccCCCCc--eEEEEeecCCCCCCCCCCCCCCCC
Q 004047 102 PEKYSLQTTRSW-----------EFVGLDEVAKQNWNHFNMGQDLLSKARYGQD--VIVGLVDNGVWPESKSFSDEGMGP 168 (777)
Q Consensus 102 ~~~~~~~~~~s~-----------~~~gl~~~~~~~~~~~~~~~~~~~~g~~G~G--V~VgVIDtGid~~Hp~f~~~~~~~ 168 (777)
.++++....+ ..|++..+ . .+.+|..+ +|+| |+|||||||||++||+|.++
T Consensus 62 --~~~~~~~~~~~~~~~~~~~~~~~w~~~~i---~------~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~---- 125 (395)
T 2z2z_A 62 --QAVLLGKPSWLGGGSTQPAQTIPWGIERV---K------APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---- 125 (395)
T ss_dssp --EEEECCEECC------CCSCCCCHHHHHT---T------CGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG----
T ss_pred --eecccCCCCcccccccCccccCCcchhhc---C------HHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc----
Confidence 7776533221 12333322 1 12789988 9999 99999999999999999742
Q ss_pred CCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCC
Q 004047 169 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAE 248 (777)
Q Consensus 169 ~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~ 248 (777)
+...++|..+... .+.....|+.||||||||||+|.. ++
T Consensus 126 -----------------------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~vAgiia~~~-n~--------- 164 (395)
T 2z2z_A 126 -----------------------IAWCVSTLRGKVS--------TKLRDCADQNGHGTHVIGTIAALN-ND--------- 164 (395)
T ss_dssp -----------------------EEEEEECGGGCCB--------CCHHHHBCSSSHHHHHHHHHHCCC-SS---------
T ss_pred -----------------------cccCccccCCccc--------CCCCCCCCCCCCHHHHHHHHHeec-CC---------
Confidence 3334444332100 001124678999999999999872 11
Q ss_pred CceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC--------------------CceEEEeecCCCC
Q 004047 249 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD--------------------GVHVLSISIGTNQ 308 (777)
Q Consensus 249 g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~--------------------gvdVIn~SlG~~~ 308 (777)
..+.||||+|+|+.+|++++. | .+..+++++||+||+++ +++|||||||...
T Consensus 165 ~g~~GvAp~a~l~~~kv~~~~--g------~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~ 236 (395)
T 2z2z_A 165 IGVVGVAPGVQIYSVRVLDAR--G------SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA 236 (395)
T ss_dssp SSCCCSSTTCEEEEEECSCTT--S------EEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC
T ss_pred CceEEECCCCEEEEEEEecCC--C------CccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC
Confidence 124699999999999999876 4 46789999999999988 9999999999832
Q ss_pred CCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCc
Q 004047 309 PFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKK 388 (777)
Q Consensus 309 ~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 388 (777)
....+..++.++.++|++||+||||+|......+...+++|+|||++.
T Consensus 237 ----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------------- 284 (395)
T 2z2z_A 237 ----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS---------------------------- 284 (395)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT----------------------------
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecC----------------------------
Confidence 235677788889999999999999999876666667799999998542
Q ss_pred ceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCcc
Q 004047 389 MHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHY 468 (777)
Q Consensus 389 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~ 468 (777)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCC
Q 004047 469 LPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSP 548 (777)
Q Consensus 469 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~ 548 (777)
.+.++.||+||| +|+|||++|+|+++.
T Consensus 285 ---------------------------------------~~~~a~fS~~G~----------~v~APG~~i~s~~~~---- 311 (395)
T 2z2z_A 285 ---------------------------------------NDNIASFSNRQP----------EVSAPGVDILSTYPD---- 311 (395)
T ss_dssp ---------------------------------------TSCBCTTSCSSC----------SEEEECSSEEEEETT----
T ss_pred ---------------------------------------CCCCCcccCCCC----------CEEeCCCCeeeecCC----
Confidence 247889999998 679999999999987
Q ss_pred CcccCCcccccceeeccccchhhHHHHHHHHHHHHCC-------------CCCHHHHHHHHHhcccccCCCCCcccCCCC
Q 004047 549 SKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP-------------DWSSAAIRSALMTTAWMKNNKALPITNADG 615 (777)
Q Consensus 549 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-------------~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 615 (777)
+.|..++|||||||||||++|||+|++| .|++.+||++|++||+++...|
T Consensus 312 ---------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g-------- 374 (395)
T 2z2z_A 312 ---------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG-------- 374 (395)
T ss_dssp ---------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS--------
T ss_pred ---------CceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC--------
Confidence 6899999999999999999999999999 9999999999999999875322
Q ss_pred CCCCCCceeeeccCccccCCC
Q 004047 616 SIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 616 ~~~~~~~~G~G~vn~~~Al~~ 636 (777)
.+..||||+||+.+|++.
T Consensus 375 ---~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 375 ---WDADYGYGVVRAALAVQA 392 (395)
T ss_dssp ---SBTTTBTCBCCHHHHHHH
T ss_pred ---CCCCccCceeCHHHHHHH
Confidence 457899999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=510.25 Aligned_cols=337 Identities=19% Similarity=0.249 Sum_probs=261.9
Q ss_pred cceEEEeeeeEeEEEEEcCHHHHHHhhc-CCCeEEEEeCCCCccccccCCccc----------ccccchhhhcccCcccc
Q 004047 63 ASHLYSYKHSINGFSAVLTPDEAARLSE-LEEVVSVYPSHPEKYSLQTTRSWE----------FVGLDEVAKQNWNHFNM 131 (777)
Q Consensus 63 ~~i~~~y~~~~ng~s~~~~~~~~~~L~~-~~~V~~V~~~~~~~~~~~~~~s~~----------~~gl~~~~~~~~~~~~~ 131 (777)
.+++++|.. |++|+++++++++++|++ +|+|++|+++. .+++....... .|++..+. .
T Consensus 66 ~~v~~~~~~-~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~w~l~~i~--------~ 134 (471)
T 3t41_A 66 LNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATC--STCITSEKTIDRTSNESLFSRQWDMNKIT--------N 134 (471)
T ss_dssp CEEEEEEGG-GTEEEEEECHHHHHHHHTCTTTEEEEEECC--SSCBCCCCCCCC---CCSCCCCHHHHTTT--------T
T ss_pred CEEEEecCC-ccEEEEEeCHHHHHHHHhcCCCCcEEEecc--eeccccccccccCCCCccccccccHhhcc--------C
Confidence 457788865 999999999999999999 99999999999 77765433211 12222220 0
Q ss_pred ccccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCC
Q 004047 132 GQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 211 (777)
Q Consensus 132 ~~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 211 (777)
...+|..+.+|+||+|||||||||++||+|.++- |.+. ..++....|... ....
T Consensus 135 ~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~-------------~~~~~~~~~~~~------~~~~ 188 (471)
T 3t41_A 135 NGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STDS-------------KNLVPLNGFRGT------EPEE 188 (471)
T ss_dssp TTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTTC-------------EECCCTTCGGGC------CTTC
T ss_pred cHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccCC-------------cccccCCCccCC------Cccc
Confidence 1268999999999999999999999999997531 1110 011111111111 0111
Q ss_pred CCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004047 212 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (777)
Q Consensus 212 ~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 291 (777)
..+...+.|..||||||||||+|+. .+.||||+|+|+++|++++. .+..+++++||+|
T Consensus 189 ~~~~~~~~d~~gHGT~vAgiiaa~g-------------~~~GvAp~a~l~~~kv~~~~---------~~~~~~i~~ai~~ 246 (471)
T 3t41_A 189 TGDVHDVNDRKGHGTMVSGQTSANG-------------KLIGVAPNNKFTMYRVFGSK---------KTELLWVSKAIVQ 246 (471)
T ss_dssp CCCTTCCCCSSSHHHHHHHHHHCBS-------------SSBCSSTTSCEEEEECCSSS---------CCCHHHHHHHHHH
T ss_pred CCCCCCCcCCCCccchhhheeecCC-------------ceeEECCCCeEEEEEeccCC---------CCcHHHHHHHHHH
Confidence 1223457789999999999999862 25799999999999999874 3789999999999
Q ss_pred HHhCCceEEEeecCCCCCCC------------CCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---------------
Q 004047 292 AIRDGVHVLSISIGTNQPFA------------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--------------- 344 (777)
Q Consensus 292 a~~~gvdVIn~SlG~~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~--------------- 344 (777)
|+++|++|||||||...... ...+.+..++..+.++|++||+||||+|.....
T Consensus 247 a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~ 326 (471)
T 3t41_A 247 AANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGE 326 (471)
T ss_dssp HHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSE
T ss_pred HHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCc
Confidence 99999999999999731111 123567788888999999999999999976442
Q ss_pred ---CcCCCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcc
Q 004047 345 ---LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKV 421 (777)
Q Consensus 345 ---~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 421 (777)
.+...+++|+|||++.
T Consensus 327 ~~~~Pa~~~~vitVgA~~~------------------------------------------------------------- 345 (471)
T 3t41_A 327 VKDVPASMDNVVTVGSTDQ------------------------------------------------------------- 345 (471)
T ss_dssp EEEETTTSTTEEEEEEECT-------------------------------------------------------------
T ss_pred eeeccccCCCeEEEEeeCC-------------------------------------------------------------
Confidence 3345588999987542
Q ss_pred cceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceE
Q 004047 422 KGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQART 501 (777)
Q Consensus 422 ~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~ 501 (777)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCccccccCCCCCCCCCCCcCCceeeCCCc----------------------EEEcccCCCCCCcccCCccccc
Q 004047 502 VLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN----------------------ILAAWSEASSPSKLAFDKRIVK 559 (777)
Q Consensus 502 ~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~ 559 (777)
.+.+++||+|||+. |||+|||++ |+++++. +.
T Consensus 346 ------~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~-------------~~ 399 (471)
T 3t41_A 346 ------KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN-------------GR 399 (471)
T ss_dssp ------TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT-------------SS
T ss_pred ------CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCC-------------CC
Confidence 24788999999964 599999987 8999877 78
Q ss_pred ceeeccccchhhHHHHHHHHHHHHCC-CCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCCC
Q 004047 560 YTIFSGTSMSCPHVAAAAALLKAIHP-DWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPG 637 (777)
Q Consensus 560 y~~~sGTSmAaP~VAG~aALl~q~~P-~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 637 (777)
|..++|||||||||||++|||+|++| .++|++||++|++||.+... .++..||||+||+.+|++..
T Consensus 400 ~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 400 YIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC------------CCHHHHTTCBBCHHHHTTTT
T ss_pred EEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC------------CCcCccccChhCHHHHHHHH
Confidence 99999999999999999999999999 89999999999999997643 36778999999999999853
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=494.14 Aligned_cols=378 Identities=20% Similarity=0.267 Sum_probs=274.0
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|.. +|+||+|||||||||++||+|.++ ++..+++... .
T Consensus 15 ~~w~~--~g~gv~VaViDtGvd~~Hp~l~~~---------------------------~~~~~~~~~~-----------~ 54 (441)
T 1y9z_A 15 VLSDS--QAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT-----------G 54 (441)
T ss_dssp SSCCT--TGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS-----------C
T ss_pred hhhhc--CCCCcEEEEEcCCCCCCChhHhcC---------------------------cccCcccCCC-----------C
Confidence 78875 478999999999999999999743 1111111110 1
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCC--eEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA--RLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A--~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 291 (777)
+...+.|..||||||||||+|... . ..+.||||+| +|+.+|++++. | .+..+++++||+|
T Consensus 55 ~~~~~~d~~gHGT~vAgiia~~~~---------~-~g~~GvAP~a~~~l~~~kv~~~~--g------~~~~~~~~~ai~~ 116 (441)
T 1y9z_A 55 NWYQPGNNNAHGTHVAGTIAAIAN---------N-EGVVGVMPNQNANIHIVKVFNEA--G------WGYSSSLVAAIDT 116 (441)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCCCS---------S-SBCCCSSCSSCSEEEEEECEETT--E------ECCSSCHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHhcccC---------C-CCceEecCCCCCEEEEEEEeCCC--C------CcCHHHHHHHHHH
Confidence 123567889999999999999731 1 2257999995 99999999876 4 4677899999999
Q ss_pred HHhC-CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEe
Q 004047 292 AIRD-GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVL 370 (777)
Q Consensus 292 a~~~-gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~ 370 (777)
|+++ |++|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+.........
T Consensus 117 a~~~~g~~Vin~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~ 192 (441)
T 1y9z_A 117 CVNSGGANVVTMSLGGSG----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY 192 (441)
T ss_dssp HHHTTCCSEEEECCCBSC----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCC
T ss_pred HHHhcCCcEEEeCCCCCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccC
Confidence 9999 9999999999832 2345677888899999999999999998766666677999999999887654443333
Q ss_pred CCCcE-----------------------EEeeeeccCCC---Cccee--eEEecccccCCcCcCCCCCCCCC--CCCCCc
Q 004047 371 GTGME-----------------------IIGKTVTPYNL---KKMHP--LVYAADVVVPGVHQNETNQCLPG--SLTPEK 420 (777)
Q Consensus 371 ~~~~~-----------------------~~g~~~~~~~~---~~~~~--~v~~~~~~~~~~~~~~~~~c~~~--~~~~~~ 420 (777)
+.... +.|.+++.... ...++ +.+..+.. ..........|... .++..+
T Consensus 193 g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~~C~~~~~~~~~~~ 271 (441)
T 1y9z_A 193 TDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPI-NASATGALAECTVNGTSFSCGN 271 (441)
T ss_dssp CTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCC-CCEEEEEEEEEEEETTEEECCC
T ss_pred CCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCcccccccc-ccccccchhccccccccccCCC
Confidence 32221 22222221110 00000 11111110 00001122457644 557889
Q ss_pred ccceEEEEecCCc-----chhhhhHHHhhcCceEEEEecCCCCCCc------cccCCccccEEEEeHHHHHHHHHHHhcC
Q 004047 421 VKGKIVLCMRGSG-----FKLSKGMEVKRAGGVGLILGNSPANGNE------YSYDAHYLPATAVLYDDAIKIHEYIKST 489 (777)
Q Consensus 421 ~~g~ivl~~~g~~-----~~~~~~~~~~~~Ga~gvi~~n~~~~~~~------~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 489 (777)
++|||++|+|+.+ .+.+|..+++++|+.++|+||+...... .......+|.++++..+|+.|++|+...
T Consensus 272 ~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~ 351 (441)
T 1y9z_A 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS 351 (441)
T ss_dssp CTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE
T ss_pred ccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC
Confidence 9999999999876 6789999999999999999998542211 1223467999999999999998865321
Q ss_pred CCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccch
Q 004047 490 NNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMS 569 (777)
Q Consensus 490 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 569 (777)
+ .+ ++... +.|..+||||||
T Consensus 352 ----~-----------------------------------t~--------~~~~~-------------~~y~~~sGTSmA 371 (441)
T 1y9z_A 352 ----T-----------------------------------TV--------SNQGN-------------QDYEYYNGTSMA 371 (441)
T ss_dssp ----E-----------------------------------EE--------EEEEE-------------ESEEEECSHHHH
T ss_pred ----c-----------------------------------cc--------ccccC-------------CCceeecccccC
Confidence 0 00 11111 689999999999
Q ss_pred hhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCCCceeeCchhhHHH
Q 004047 570 CPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLL 649 (777)
Q Consensus 570 aP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~ 649 (777)
||||||++|||+|+||+|+|++||++||+||++++..+ ++.+||+|+||+.+|+ ||+.
T Consensus 372 aP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~-----------~~~~ 429 (441)
T 1y9z_A 372 TPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG-----------RDNQTGYGMINAVAAK-----------AYLD 429 (441)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS-----------CBTTTBTCBCCHHHHH-----------HHHH
T ss_pred CcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC-----------CcccccccccCHHHHH-----------HHHH
Confidence 99999999999999999999999999999999886543 3567999999999995 5999
Q ss_pred hhhcCCC
Q 004047 650 YLCSHGF 656 (777)
Q Consensus 650 ~~~~~~~ 656 (777)
|||++++
T Consensus 430 ~lc~~~~ 436 (441)
T 1y9z_A 430 ESCTGPT 436 (441)
T ss_dssp HCTTCC-
T ss_pred hhhcCCC
Confidence 9998765
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-56 Score=515.17 Aligned_cols=340 Identities=21% Similarity=0.217 Sum_probs=56.2
Q ss_pred EEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEeeeeEeEEEEEcCHHHHHHhhcCCCeEEEEeCCCCc
Q 004047 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEK 104 (777)
Q Consensus 25 ~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~~~~~ 104 (777)
+|||+||+.... ...+.+.+.+....... ....++++.|++.|+||+++++++++++|+++|+|++|+++. .
T Consensus 77 ~YIV~lk~~~~~-----~~~~~~~~~l~a~~~~~-g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~--~ 148 (692)
T 2p4e_P 77 TYVVVLKEETHL-----SQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS--S 148 (692)
T ss_dssp EEEEEECTTCCH-----HHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEE--E
T ss_pred cEEEEECCCCCH-----HHHHHHHHHHHHHHhhc-ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecc--c
Confidence 899999988732 23333444444332211 112478999999999999999999999999999999999999 6
Q ss_pred cccccCCcccccccchhhhcccCccccccccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccc
Q 004047 105 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 184 (777)
Q Consensus 105 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~ 184 (777)
+..+ .. .|++..+...... ...|..+.+|+||+|||||||||++||+|.++.. |. +|+
T Consensus 149 v~~~-~~---pWgL~~i~~~~~~-----~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~~ 206 (692)
T 2p4e_P 149 VFAQ-SI---PWNLERITPPRYR-----ADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------DFE 206 (692)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred cccC-CC---Ccchhhccccccc-----ccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------ccc
Confidence 6542 22 2466554221110 1468888999999999999999999999975410 10 010
Q ss_pred cccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEE
Q 004047 185 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYK 264 (777)
Q Consensus 185 ~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~k 264 (777)
.+.+. .+ ......+.|..||||||||||+|+. .||||+|+|+++|
T Consensus 207 ------------~~~d~----dg----~~~~~~~~D~~GHGTHVAGiIAg~~---------------~GVAP~A~L~~vK 251 (692)
T 2p4e_P 207 ------------NVPEE----DG----TRFHRQASKCDSHGTHLAGVVSGRD---------------AGVAKGASMRSLR 251 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------cccCC----CC----CcccCCCCCCCCcHHHhhhHhhcCC---------------CccCCCCEEEEEE
Confidence 00000 00 0001246789999999999999862 5999999999999
Q ss_pred eecCCCCCCccCCCCCCHHHHHHHHHHHHhC------CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCC
Q 004047 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRD------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNS 338 (777)
Q Consensus 265 v~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~ 338 (777)
++++. | .++.+++++||+|++++ +++|||||||+ . ....+..++.++.++|++||+||||+
T Consensus 252 Vl~~~--G------~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg-~----~s~~l~~Ai~~A~~~GVlvVaAAGN~ 318 (692)
T 2p4e_P 252 VLNCQ--G------KGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAG-G----YSRVLNAACQRLARAGVVLVTAAGNF 318 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecCC--C------CCCHHHHHHHHHHHHhhhhcccCCceEEEecCCC-C----CcHHHHHHHHHHHHCCCEEEEECCCC
Confidence 99876 4 46788999999999986 89999999998 2 23455666788899999999999999
Q ss_pred CCCCCCC-cCCCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCC
Q 004047 339 GPAPSSL-SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLT 417 (777)
Q Consensus 339 G~~~~~~-~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~ 417 (777)
|.+.... +...|++|+|||++.+...
T Consensus 319 G~~~~~~sPA~~~~vItVGA~d~~~~~----------------------------------------------------- 345 (692)
T 2p4e_P 319 RDDACLYSPASAPEVITVGATNAQDQP----------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCccCcccCCCEEEEEEEcCCCCc-----------------------------------------------------
Confidence 9765333 4456999999987532100
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEE
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 497 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~ 497 (777)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHH
Q 004047 498 QARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAA 577 (777)
Q Consensus 498 ~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 577 (777)
...-+.||+||| ||||+|||++|+++++... +.|..++|||||||||||++
T Consensus 346 ----------a~~ss~fSn~G~--------~vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~a 396 (692)
T 2p4e_P 346 ----------VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIA 396 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------cccccccCCCCC--------ceeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHH
Confidence 001123899998 4599999999999997632 57899999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHhcccccC
Q 004047 578 ALLKAIHPDWSSAAIRSALMTTAWMKN 604 (777)
Q Consensus 578 ALl~q~~P~~s~~~ik~~L~~TA~~~~ 604 (777)
|||+|++|+|+|++||++|++||.+..
T Consensus 397 ALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 397 AMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp ---------------------------
T ss_pred HHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 999999999999999999999998653
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-54 Score=494.96 Aligned_cols=386 Identities=22% Similarity=0.215 Sum_probs=269.7
Q ss_pred CCcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEeeeeEeEEEEEcCH----HHHHHhh--cCCCeE
Q 004047 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTP----DEAARLS--ELEEVV 95 (777)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~----~~~~~L~--~~~~V~ 95 (777)
...+|||.||+.. ...++++.. ..++++++.. +++++++++. +.+++|+ ++|+|+
T Consensus 30 ~~~~~IV~~k~~~-----------~~~~~~~~~-------g~~v~~~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 90 (671)
T 1r6v_A 30 TEGKILVGYNDRS-----------EVDKIVKAV-------NGKVVLELPQ-IKVVSIKLNGMTVKQAYDKIKALALKGIR 90 (671)
T ss_dssp CTTEEEEEESSHH-----------HHHHHHHHH-------TCEEEEEEGG-GTEEEEECSSCCHHHHHHHHTTSCCSSEE
T ss_pred CCccEEEEECCCc-----------CHHHHHHhc-------CCeEEEEcCC-CcEEEEEeCCcCHHHHHHHHHhccCCCce
Confidence 4689999999643 112223222 1356777765 8999999865 3356676 489999
Q ss_pred EEEeCCCCccccccCC----cccc-----cccc--------hhhhcccCccc-ccccc-ccccCCCCceEEEEeecCCCC
Q 004047 96 SVYPSHPEKYSLQTTR----SWEF-----VGLD--------EVAKQNWNHFN-MGQDL-LSKARYGQDVIVGLVDNGVWP 156 (777)
Q Consensus 96 ~V~~~~~~~~~~~~~~----s~~~-----~gl~--------~~~~~~~~~~~-~~~~~-~~~g~~G~GV~VgVIDtGid~ 156 (777)
+|||+. .+++.... .... ..+. ......|.+.. ....+ |.. ++|+||+|||||||||+
T Consensus 91 ~vepd~--~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~ 167 (671)
T 1r6v_A 91 YVEPSY--KRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDG 167 (671)
T ss_dssp EEECCB--CCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBT
T ss_pred EEecCe--EEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCC
Confidence 999998 65443100 0000 0000 00001111111 11255 887 99999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCC
Q 004047 157 ESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRR 236 (777)
Q Consensus 157 ~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~ 236 (777)
+||+|.++- +. +...+.+... ....+..|..||||||||||||..
T Consensus 168 ~HpdL~~~~-------~~-------------------g~~~~~~~~~---------p~~~d~~d~~gHGThVAGiIAa~~ 212 (671)
T 1r6v_A 168 THPDLEGQV-------IA-------------------GYRPAFDEEL---------PAGTDSSYGGSAGTHVAGTIAAKK 212 (671)
T ss_dssp TSGGGTTTB-------CC-------------------EEEGGGTEEE---------CTTCBCCTTCSHHHHHHHHHHCCC
T ss_pred CCccccccE-------Ee-------------------cccccCCCcC---------CCCCCCccCCCcchhhhhhhhccC
Confidence 999997531 11 1111111100 001234567899999999999973
Q ss_pred CCCCCccCCcCCCceeeecCCCeEEEEEeecC----CCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeecCCCCCCCC
Q 004047 237 VPNASAFGGFAEGTASGGAPLARLAIYKACWA----TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAF 312 (777)
Q Consensus 237 ~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~----~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~ 312 (777)
++ ..+.||||+|+|+.+|+++. ...+ ....+.+++||+||+++|++|||||||+..
T Consensus 213 -ng---------~gv~GVAP~A~I~~vkv~~~~~~~~g~g------~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---- 272 (671)
T 1r6v_A 213 -DG---------KGIVGVAPGAKIMPIVIFDDPALVGGNG------YVGDDYVAAGIIWATDHGAKVMNHSWGGWG---- 272 (671)
T ss_dssp -SS---------SSCCCSCTTSEEEEEESBCCHHHHCTTS------BCCHHHHHHHHHHHHHTTCSEEEECEEBSC----
T ss_pred -CC---------CceEEECCCCEEEEEEeccCccccCCCC------ccCHHHHHHHHHHHHHcCCCEEEeCCCCCC----
Confidence 11 12579999999999999976 1113 356678999999999999999999999832
Q ss_pred CccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCcCCCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCccee
Q 004047 313 NRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391 (777)
Q Consensus 313 ~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 391 (777)
....+..++.+|.++|++||+||||+|... ...+...|++|+|||++.+..
T Consensus 273 ~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~---------------------------- 324 (671)
T 1r6v_A 273 YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG---------------------------- 324 (671)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT----------------------------
T ss_pred CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC----------------------------
Confidence 345778888999999999999999999764 334445689999998643110
Q ss_pred eEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccE
Q 004047 392 LVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPA 471 (777)
Q Consensus 392 ~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~ 471 (777)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCc-
Q 004047 472 TAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSK- 550 (777)
Q Consensus 472 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~- 550 (777)
...+++|||+||.. ||+|||++|+++++.......
T Consensus 325 ------------------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~ 360 (671)
T 1r6v_A 325 ------------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYE 360 (671)
T ss_dssp ------------------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCC
T ss_pred ------------------------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccc
Confidence 01478999999975 999999999999886321110
Q ss_pred ----ccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeee
Q 004047 551 ----LAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSG 626 (777)
Q Consensus 551 ----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 626 (777)
.......+.|..++|||||||||||++|||+|++|+++|.+||++|++||+++...| .+..||||
T Consensus 361 ~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g-----------~d~~~G~G 429 (671)
T 1r6v_A 361 GHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-----------WDHDTGYG 429 (671)
T ss_dssp CCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-----------CBTTTBTC
T ss_pred cccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC-----------CCCCcccc
Confidence 001112357999999999999999999999999999999999999999999875432 35679999
Q ss_pred ccCccccCCCCceeeCchhhH
Q 004047 627 HFRPTKAADPGLVYDASYEDY 647 (777)
Q Consensus 627 ~vn~~~Al~~~lv~~~~~~~~ 647 (777)
+||+.+|++..+..+....+|
T Consensus 430 ~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 430 LVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp BCCHHHHHHCCCCSSSEEEEE
T ss_pred eeCHHHHhhhhcCCCCCccce
Confidence 999999999877665544443
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-52 Score=436.96 Aligned_cols=258 Identities=26% Similarity=0.334 Sum_probs=211.3
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+..|+||+|||||||||++||+|.++ ++..++|.+.
T Consensus 22 ~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------------~~~~~~~~~~------------ 62 (280)
T 1dbi_A 22 YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT------------
T ss_pred HHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------------cccceeccCC------------
Confidence 8999988888999999999999999999642 3444555432
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..||||||||||+|...+. ..+.||||+|+|+.+|+++.. | .+..+++++||+||+
T Consensus 63 -~~~~~d~~gHGT~vAgiia~~~~~~---------~g~~GvAp~a~l~~~kv~~~~--g------~~~~~~i~~ai~~a~ 124 (280)
T 1dbi_A 63 -DYDPMDLNNHGTHVAGIAAAETNNA---------TGIAGMAPNTRILAVRALDRN--G------SGTLSDIADAIIYAA 124 (280)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCCCSSS---------SSCCCSSSSCEEEEEECCCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCcHHHHHHHHhCcCCCC---------CcceEeCCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHH
Confidence 1245788999999999999974221 235699999999999999876 4 468899999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCC
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
++|++|||||||... ....+..++.++.++|++||+||||+|......+...+++|+|||++.
T Consensus 125 ~~g~~Vin~S~G~~~----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 187 (280)
T 1dbi_A 125 DSGAEVINLSLGCDC----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------- 187 (280)
T ss_dssp HTTCSEEEECCSSCC----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------
T ss_pred HCCCCEEEeCCCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-------------
Confidence 999999999999832 346677888899999999999999999765555666789999998542
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceee
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 533 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~A 533 (777)
.+.++.||++||.. ||+|
T Consensus 188 ------------------------------------------------------~~~~~~~S~~G~~~--------dv~A 205 (280)
T 1dbi_A 188 ------------------------------------------------------YDRLASFSNYGTWV--------DVVA 205 (280)
T ss_dssp ------------------------------------------------------TSCBCTTBCCSTTC--------CEEE
T ss_pred ------------------------------------------------------CCCcCCCCCCCCCc--------eEEE
Confidence 24778999999854 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004047 534 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 613 (777)
Q Consensus 534 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 613 (777)
||++|+++++. +.|..++|||||||||||++|||++ |.+++.+||++|++||+++..
T Consensus 206 pG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-------- 262 (280)
T 1dbi_A 206 PGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-------- 262 (280)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT--------
T ss_pred ecCCeEeecCC-------------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC--------
Confidence 99999999976 6899999999999999999999987 899999999999999998753
Q ss_pred CCCCCCCCceeeeccCccccCC
Q 004047 614 DGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 614 ~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
....||+|+||+.+|++
T Consensus 263 -----~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 263 -----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----BTTTBSSEECCHHHHHT
T ss_pred -----CCCcccCCEECHHHHhc
Confidence 23569999999999986
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-52 Score=438.60 Aligned_cols=256 Identities=28% Similarity=0.432 Sum_probs=214.2
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|+ +...++|..+
T Consensus 15 ~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~------------ 53 (274)
T 1r0r_E 15 KVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAG------------ 53 (274)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTT------------
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCCHhHc-----------------------------CCCCccccCC------------
Confidence 78999999999999999999999999994 1223333322
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
.....|..||||||||||+|... ...+.||||+|+|+.+|+++.. + .+..+++++||+|++
T Consensus 54 -~~~~~d~~gHGT~vAgiia~~~~----------~~g~~GvAp~a~l~~~~v~~~~--g------~~~~~~i~~ai~~a~ 114 (274)
T 1r0r_E 54 -EAYNTDGNGHGTHVAGTVAALDN----------TTGVLGVAPSVSLYAVKVLNSS--G------SGSYSGIVSGIEWAT 114 (274)
T ss_dssp -CCTTCCSSSHHHHHHHHHHCCSS----------SSBCCCSSTTSEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred -CCCCCCCCCCHHHHHHHHHccCC----------CCceEEECCCCEEEEEEEECCC--C------CccHHHHHHHHHHHH
Confidence 11356789999999999998621 1124799999999999999876 4 467889999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCC----CCCcCCCcceeeeccCccccccccceE
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP----SSLSNLAPWLITVGAGSLDRDFVGPVV 369 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~----~~~~~~ap~vitVgAs~~~~~~~~~~~ 369 (777)
+++++|||||||... ....+..+++++.++|++||+||||+|... ...+...+++|+||+++.
T Consensus 115 ~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------- 181 (274)
T 1r0r_E 115 TNGMDVINMSLGGAS----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------- 181 (274)
T ss_dssp HTTCSEEEECEEBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------
T ss_pred HcCCCEEEeCCCCCC----CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC---------
Confidence 999999999999832 246677888899999999999999999753 223344588999997542
Q ss_pred eCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceE
Q 004047 370 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 449 (777)
Q Consensus 370 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g 449 (777)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCC
Q 004047 450 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 529 (777)
Q Consensus 450 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KP 529 (777)
.+.++.||++||. |
T Consensus 182 ----------------------------------------------------------~~~~~~~S~~G~~--------~ 195 (274)
T 1r0r_E 182 ----------------------------------------------------------NSNRASFSSVGAE--------L 195 (274)
T ss_dssp ----------------------------------------------------------TSCBCTTCCCSTT--------E
T ss_pred ----------------------------------------------------------CCCcCccCCCCCC--------c
Confidence 2467899999985 4
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCc
Q 004047 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 609 (777)
Q Consensus 530 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~ 609 (777)
||+|||.+|+++++. +.|..++|||||||||||++|||+|++|.+++++||++|++||+++.
T Consensus 196 di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----- 257 (274)
T 1r0r_E 196 EVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----- 257 (274)
T ss_dssp EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-----
T ss_pred eEEeCCCCeEeecCC-------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC-----
Confidence 999999999999986 78999999999999999999999999999999999999999999763
Q ss_pred ccCCCCCCCCCCceeeeccCccccCC
Q 004047 610 ITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 610 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
++..||+|+||+.+|++
T Consensus 258 ---------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 ---------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---------CHHHHTTCBCCHHHHTC
T ss_pred ---------CCCCcccCccCHHHHhC
Confidence 35689999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-52 Score=434.92 Aligned_cols=255 Identities=30% Similarity=0.438 Sum_probs=216.1
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|+|||||| .+||+|+ +...++|..+
T Consensus 15 ~a~~~g~~G~gv~VaViDtGi-~~h~~l~-----------------------------~~~~~~~~~~------------ 52 (269)
T 1gci_A 15 AAHNRGLTGSGVKVAVLDTGI-STHPDLN-----------------------------IRGGASFVPG------------ 52 (269)
T ss_dssp HHHHTTCSCTTCEEEEEESCC-CCCTTCC-----------------------------EEEEEECSTT------------
T ss_pred HHHhcCCCCCCCEEEEECCCC-CCCHhhc-----------------------------ccCCcccCCC------------
Confidence 799999999999999999999 8999994 1223334322
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..||||||||||+|.. + ...+.||||+|+|+.+|+++.. + .+..+++++||+|++
T Consensus 53 -~~~~~d~~gHGT~vAgiia~~~-~---------~~~~~GvAp~a~l~~~~v~~~~--g------~~~~~~~~~ai~~a~ 113 (269)
T 1gci_A 53 -EPSTQDGNGHGTHVAGTIAALN-N---------SIGVLGVAPSAELYAVKVLGAS--G------SGSVSSIAQGLEWAG 113 (269)
T ss_dssp -CCSCSCSSSHHHHHHHHHHCCC-S---------SSBCCCSSTTCEEEEEECBCTT--S------CBCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCChHHHHHHHhcCc-C---------CCCcEEeCCCCEEEEEEeECCC--C------CcCHHHHHHHHHHHH
Confidence 1235688999999999999862 1 1124799999999999999876 4 468899999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCC
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
+++++|||||||... ....+..+++++.++|++||+||||+|......+...+++|+|||++.
T Consensus 114 ~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 176 (269)
T 1gci_A 114 NNGMHVANLSLGSPS----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------- 176 (269)
T ss_dssp HTTCSEEEECCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------
T ss_pred HCCCeEEEeCCCCCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC-------------
Confidence 999999999999832 235677888899999999999999999776666666789999998542
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceee
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 533 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~A 533 (777)
.+.++.||++||.. ||+|
T Consensus 177 ------------------------------------------------------~~~~~~~S~~G~~~--------di~A 194 (269)
T 1gci_A 177 ------------------------------------------------------NNNRASFSQYGAGL--------DIVA 194 (269)
T ss_dssp ------------------------------------------------------TSCBCTTCCCSTTE--------EEEE
T ss_pred ------------------------------------------------------CCCCCCCCCCCCCc--------ceEe
Confidence 24678999999965 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004047 534 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 613 (777)
Q Consensus 534 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 613 (777)
||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++.
T Consensus 195 PG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g--------- 252 (269)
T 1gci_A 195 PGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------- 252 (269)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------
T ss_pred cCCCeEeecCC-------------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC---------
Confidence 99999999986 68999999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCceeeeccCccccCC
Q 004047 614 DGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 614 ~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
+++.||+|+||+.+|++
T Consensus 253 -----~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 -----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----CHHHHTTCBCCHHHHTC
T ss_pred -----CCCCcccCccCHHHHcC
Confidence 35689999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=436.00 Aligned_cols=258 Identities=30% Similarity=0.432 Sum_probs=214.7
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|+. ...++|..+
T Consensus 15 ~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~------------ 53 (281)
T 1to2_E 15 ALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPS------------ 53 (281)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTT------------
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-----------------------------cCCccccCC------------
Confidence 789999999999999999999999999941 222333221
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
+.....|..||||||||||+|... ...+.||||+|+|+.+|+++.. + .+..++++++|+|++
T Consensus 54 ~~~~~~d~~gHGT~vAgiia~~~~----------~~g~~GvAp~a~l~~~kv~~~~--g------~~~~~~i~~ai~~a~ 115 (281)
T 1to2_E 54 ETNPFQDNNSHGTHVAGTVAALNN----------SIGVLGVAPSASLYAVKVLGAD--G------SGQYSWIINGIEWAI 115 (281)
T ss_dssp CCCTTCCSSSHHHHHHHHHHCCSS----------SSSBCCSSTTSEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHhccCC----------CCcceeeCCCCEEEEEEEeCCC--C------CccHHHHHHHHHHHH
Confidence 111236789999999999998621 1124799999999999999876 4 467899999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCC----CCCcCCCcceeeeccCccccccccceE
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP----SSLSNLAPWLITVGAGSLDRDFVGPVV 369 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~----~~~~~~ap~vitVgAs~~~~~~~~~~~ 369 (777)
+++++|||||||... ....+..+++++.++|++||+||||+|... ...+...|++|+|||++.
T Consensus 116 ~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------- 182 (281)
T 1to2_E 116 ANNMDVINMSLGGPS----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------- 182 (281)
T ss_dssp HTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------
T ss_pred HCCCcEEEECCcCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC---------
Confidence 999999999999832 246778888899999999999999999763 223344588999997532
Q ss_pred eCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceE
Q 004047 370 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 449 (777)
Q Consensus 370 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g 449 (777)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCC
Q 004047 450 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 529 (777)
Q Consensus 450 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KP 529 (777)
.+.++.||++||..
T Consensus 183 ----------------------------------------------------------~~~~~~fS~~G~~~-------- 196 (281)
T 1to2_E 183 ----------------------------------------------------------SNQRASFSSVGPEL-------- 196 (281)
T ss_dssp ----------------------------------------------------------TSCBCTTCCCSTTC--------
T ss_pred ----------------------------------------------------------CCCcCCcCCCCCCc--------
Confidence 24778999999954
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCc
Q 004047 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 609 (777)
Q Consensus 530 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~ 609 (777)
||+|||.+|+++++. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 197 di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----- 258 (281)
T 1to2_E 197 DVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----- 258 (281)
T ss_dssp CEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-----
T ss_pred eEEecCCCeEeecCC-------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC-----
Confidence 999999999999986 68999999999999999999999999999999999999999999763
Q ss_pred ccCCCCCCCCCCceeeeccCccccCCC
Q 004047 610 ITNADGSIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 610 ~~~~~~~~~~~~~~G~G~vn~~~Al~~ 636 (777)
+++.||+|+||+.+|++.
T Consensus 259 ---------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 ---------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---------CHHHHTTCBCCHHHHTSS
T ss_pred ---------CCCCcccceecHHHHhhh
Confidence 457899999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-53 Score=462.45 Aligned_cols=307 Identities=19% Similarity=0.210 Sum_probs=198.1
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCcccccccccee----eeeeecc-cccccccCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKI----IGARYYL-KGFEQLYGP 208 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki----ig~~~~~-~~~~~~~~~ 208 (777)
++|..+..|++|+|||||||||++||+|++..+.+....|...++....... ..+..+ ...+.+. .....
T Consensus 22 ~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---- 96 (357)
T 4h6x_A 22 DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDY-AAFQSIRDQGLKGKEKEEALEAV---- 96 (357)
T ss_dssp HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHH-HHHHHHHHHTCCSHHHHHHHHHH----
T ss_pred HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccc-cccccccCccccccccccccccc----
Confidence 7899999999999999999999999999987666666667654432211000 000000 0000000 00000
Q ss_pred CCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHH
Q 004047 209 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288 (777)
Q Consensus 209 ~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~a 288 (777)
..+..++.|.+||||||||||+|+.. +.+.||||+|+|+.+|++...... .+..+...++++|
T Consensus 97 ---~~~~~~~~D~~gHGThVAGiiag~~~-----------~g~~GvAp~a~l~~~k~~~~~~~~---~~~~~~~~~~~~a 159 (357)
T 4h6x_A 97 ---IPDTKDRIVLNDHACHVTSTIVGQEH-----------SPVFGIAPNCRVINMPQDAVIRGN---YDDVMSPLNLARA 159 (357)
T ss_dssp ---CTTTHHHHHHHHHHHHHHHHHHCCTT-----------SSCCCSCTTSEEEEEECTTC-------------CHHHHHH
T ss_pred ---cCCCCCCcCCCCcHHHHHHHHhccCC-----------CCceEeeccceEEeeeecccCCCC---ccccccHHHHHHH
Confidence 01122455778999999999998731 135799999999999997543100 0113456678999
Q ss_pred HHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccce
Q 004047 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPV 368 (777)
Q Consensus 289 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~ 368 (777)
|+||++.|++|||||||.........+.+..++.++.++|++||+||||+|.....++...|++|+|||++.
T Consensus 160 i~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~-------- 231 (357)
T 4h6x_A 160 IDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV-------- 231 (357)
T ss_dssp HHHHHHTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT--------
T ss_pred HHHHHHcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc--------
Confidence 999999999999999998544455667888888999999999999999999776666666799999998542
Q ss_pred EeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCce
Q 004047 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (777)
Q Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~ 448 (777)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcC
Q 004047 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (777)
Q Consensus 449 gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~K 528 (777)
.+.++.|||||+. ..|
T Consensus 232 -----------------------------------------------------------~~~~~~fSn~G~~-----~~~ 247 (357)
T 4h6x_A 232 -----------------------------------------------------------DGTPCHFSNWGGN-----NTK 247 (357)
T ss_dssp -----------------------------------------------------------TSSBCTTCC---C-----TTT
T ss_pred -----------------------------------------------------------CCcccccccCCCC-----CCc
Confidence 3478899999974 458
Q ss_pred CceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHH----CCCCCHHHHHHHHHhcccccC
Q 004047 529 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWSSAAIRSALMTTAWMKN 604 (777)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s~~~ik~~L~~TA~~~~ 604 (777)
|||+|||++|+++++.. +.|..++|||||||||||++|||+++ +|.|++++||++|++||++++
T Consensus 248 ~di~APG~~i~s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~ 315 (357)
T 4h6x_A 248 EGILAPGEEILGAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD 315 (357)
T ss_dssp TEEEEECSSEEECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-----
T ss_pred cceeecCCCeEeccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCC
Confidence 99999999999998762 45778999999999999999999965 568999999999999999875
Q ss_pred CCCCcccCCCCCCCCCCceeeeccCccccCC
Q 004047 605 NKALPITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 605 ~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
.. ....+.+||+|+||+.+|++
T Consensus 316 ~~---------~~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 316 PE---------VVEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp ------------------CTTCBCCHHHHHH
T ss_pred CC---------CCCCcccceeEEecHHHHHH
Confidence 42 22345679999999999997
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-51 Score=430.89 Aligned_cols=257 Identities=26% Similarity=0.372 Sum_probs=216.3
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|... +|+||+|||||||||++||+|.+ +++..++|.++
T Consensus 22 ~aw~~~-~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~~------------ 61 (279)
T 1thm_A 22 QAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDN------------ 61 (279)
T ss_dssp HHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTT------------
T ss_pred HHHhcC-CCCCCEEEEEccCCCCCCcchhc---------------------------CccccccccCC------------
Confidence 788875 79999999999999999999974 24444555432
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..||||||||||+|...++ ..+.||||+|+|+.+|+++.. | .+..+++++||+||+
T Consensus 62 -~~~~~d~~gHGT~vAgiia~~~~n~---------~g~~GvAp~a~l~~~~v~~~~--g------~~~~~~~~~ai~~a~ 123 (279)
T 1thm_A 62 -DSTPQNGNGHGTHCAGIAAAVTNNS---------TGIAGTAPKASILAVRVLDNS--G------SGTWTAVANGITYAA 123 (279)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCCCSSS---------SSCCCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCcHHHHHHHHhCccCCC---------CccEEeCCCCEEEEEEeeCCC--C------CccHHHHHHHHHHHH
Confidence 1245788999999999999974222 225699999999999999876 4 468889999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCC
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
++|++|||||||... ..+.+..+++++.++|+++|+||||+|.....++...+++|+|||++.
T Consensus 124 ~~g~~Vin~S~G~~~----~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 186 (279)
T 1thm_A 124 DQGAKVISLSLGGTV----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------- 186 (279)
T ss_dssp HTTCSEEEECCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------
T ss_pred HCCCCEEEEecCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-------------
Confidence 999999999999832 245677888899999999999999999776666666789999998542
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceee
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 533 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~A 533 (777)
.+.++.||++||.. ||+|
T Consensus 187 ------------------------------------------------------~~~~~~fS~~G~~~--------dv~A 204 (279)
T 1thm_A 187 ------------------------------------------------------NDNKSSFSTYGSWV--------DVAA 204 (279)
T ss_dssp ------------------------------------------------------TSCBCTTCCCCTTC--------CEEE
T ss_pred ------------------------------------------------------CCCcCCcCCCCCce--------EEEE
Confidence 24678999999864 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004047 534 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 613 (777)
Q Consensus 534 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 613 (777)
||++|+++++. +.|..++|||||||||||++||| ++|.+++++||++|++||+++...
T Consensus 205 PG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~------- 262 (279)
T 1thm_A 205 PGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT------- 262 (279)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-------
T ss_pred cCCCeEEEeCC-------------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-------
Confidence 99999999987 68999999999999999999999 589999999999999999987643
Q ss_pred CCCCCCCCceeeeccCccccCC
Q 004047 614 DGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 614 ~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
...||+|+||+.+|++
T Consensus 263 ------~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 263 ------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ------TTTBSSEECCHHHHHH
T ss_pred ------CccccCCeeCHHHHhc
Confidence 2468999999999975
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=442.74 Aligned_cols=264 Identities=27% Similarity=0.385 Sum_probs=214.2
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.+ ++++.++|..++..
T Consensus 32 ~aw~~~~~G~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~~~~~~--------- 75 (327)
T 2x8j_A 32 AVWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIGGVNLTTDYGG--------- 75 (327)
T ss_dssp HHHHHHGGGTTCEEEEEESCCCTTCTTTGG---------------------------GEEEEEECSSGGGG---------
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCChhHhh---------------------------cccCCccccCCCCC---------
Confidence 899999999999999999999999999963 24455555544221
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
+.....|..||||||||||+|.. ++ ..+.||||+|+|+.+|+++.. | .+..+++++||+||+
T Consensus 76 ~~~~~~d~~gHGT~VAgiia~~~-~~---------~g~~GvAp~a~l~~~kv~~~~--g------~~~~~~i~~ai~~a~ 137 (327)
T 2x8j_A 76 DETNFSDNNGHGTHVAGTVAAAE-TG---------SGVVGVAPKADLFIIKALSGD--G------SGEMGWIAKAIRYAV 137 (327)
T ss_dssp CTTCCCCSSSHHHHHHHHHHCCC-CS---------SBCCCSSTTCEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred CCCCCCCCCCchHHHHHHHhccC-CC---------CCcEeeCCCCEEEEEEeECCC--C------CcCHHHHHHHHHHHH
Confidence 11235688999999999999972 11 125799999999999999876 4 467899999999999
Q ss_pred h------CCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCC-----CCCcCCCcceeeeccCcccc
Q 004047 294 R------DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-----SSLSNLAPWLITVGAGSLDR 362 (777)
Q Consensus 294 ~------~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~-----~~~~~~ap~vitVgAs~~~~ 362 (777)
+ .+++|||||||... ....+..++.++.++|++||+||||+|... ...+...+++|+|||++.
T Consensus 138 ~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~-- 211 (327)
T 2x8j_A 138 DWRGPKGEQMRIITMSLGGPT----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF-- 211 (327)
T ss_dssp HCCCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT--
T ss_pred hhcccccCCceEEEECCCcCC----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC--
Confidence 9 89999999999832 245677788899999999999999999652 223344589999998542
Q ss_pred ccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHH
Q 004047 363 DFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEV 442 (777)
Q Consensus 363 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~ 442 (777)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC
Q 004047 443 KRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL 522 (777)
Q Consensus 443 ~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~ 522 (777)
.+.++.||++||.
T Consensus 212 -----------------------------------------------------------------~~~~~~fS~~G~~-- 224 (327)
T 2x8j_A 212 -----------------------------------------------------------------DLRLSDFTNTNEE-- 224 (327)
T ss_dssp -----------------------------------------------------------------TCCBSCC---CCC--
T ss_pred -----------------------------------------------------------------CCCCCCccCCCCC--
Confidence 2478899999985
Q ss_pred CCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHH-----CCCCCHHHHHHHHH
Q 004047 523 DPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI-----HPDWSSAAIRSALM 597 (777)
Q Consensus 523 ~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~P~~s~~~ik~~L~ 597 (777)
|||+|||++|+++++. +.|..++|||||||||||++|||+|+ +|.+++.+||++|+
T Consensus 225 ------~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~ 285 (327)
T 2x8j_A 225 ------IDIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLV 285 (327)
T ss_dssp ------CSEEEECSSEEEECST-------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred ------ceEecCcCceEeecCC-------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHH
Confidence 4999999999999876 68999999999999999999999999 99999999999999
Q ss_pred hcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCC
Q 004047 598 TTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 598 ~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 636 (777)
+||+++.. ++..||+|+||+.+|++.
T Consensus 286 ~tA~~~g~-------------~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 286 RRATPIGF-------------TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp TTEECCSS-------------CHHHHTTCEECTTHHHHH
T ss_pred HhCccCCC-------------CCCceeeeEECHHHHHHh
Confidence 99997642 567899999999999883
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=436.63 Aligned_cols=267 Identities=24% Similarity=0.269 Sum_probs=211.6
Q ss_pred cCCC-CceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCC
Q 004047 139 ARYG-QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 217 (777)
Q Consensus 139 g~~G-~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 217 (777)
.++| +||+|||||||||++||+|.+.. +..+.+... .....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~---------------------------~~~~~~~~~-----------~~~~~ 44 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD---------------------------LTVLPTLAP-----------TAARS 44 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE---------------------------EEECCCSSC-----------CCCCT
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe---------------------------eecCcCCCC-----------CCCCC
Confidence 4678 79999999999999999997531 111111111 01112
Q ss_pred CCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc
Q 004047 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 297 (777)
Q Consensus 218 ~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv 297 (777)
..|..||||||||||+|+.. ..+.||||+|+|+.+|++.+... ......+++||+||++.++
T Consensus 45 d~~~~gHGT~VAGiiag~~~-----------~~~~GvAp~a~l~~~kv~~~~~~-------~~~~~~i~~ai~~a~~~~~ 106 (282)
T 3zxy_A 45 DGFMSAHGTHVASIIFGQPE-----------TSVPGIAPQCRGLIVPIFSDDRR-------RITQLDLARGIERAVNAGA 106 (282)
T ss_dssp TCHHHHHHHHHHHHHHCCTT-----------SSSCCSSTTSEEEEEECSCSSSS-------CCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccceeehhhccCC-----------ceeeeeccccceEeeEeeccccc-------cchHHHHHHHHHHhhccCC
Confidence 33457999999999998731 13479999999999999876532 3678889999999999999
Q ss_pred eEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCCcEEE
Q 004047 298 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377 (777)
Q Consensus 298 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~ 377 (777)
+|||||||...........+..++..+.++|+++|+||||+|......+...+++|+|||++.
T Consensus 107 ~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~----------------- 169 (282)
T 3zxy_A 107 HIINISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD----------------- 169 (282)
T ss_dssp SEEEECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT-----------------
T ss_pred eEEeccCccccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC-----------------
Confidence 999999997433344556677888899999999999999999776666666799999998542
Q ss_pred eeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCC
Q 004047 378 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 457 (777)
Q Consensus 378 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~ 457 (777)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCc
Q 004047 458 NGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN 537 (777)
Q Consensus 458 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~ 537 (777)
.+.++.||+||+. ..||||+|||.+
T Consensus 170 --------------------------------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~ 194 (282)
T 3zxy_A 170 --------------------------------------------------HGHPLDFSNWGST-----YEQQGILAPGED 194 (282)
T ss_dssp --------------------------------------------------TSCBCSSSCCCHH-----HHHHEEEEECSS
T ss_pred --------------------------------------------------CCccccccCCCCC-----ccccceeccCcc
Confidence 2477899999874 468899999999
Q ss_pred EEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHC----CCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004047 538 ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH----PDWSSAAIRSALMTTAWMKNNKALPITNA 613 (777)
Q Consensus 538 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 613 (777)
|+++++. +.|..++|||||||||||++|||+|++ |.++|++||++|++||++++..
T Consensus 195 i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~------- 254 (282)
T 3zxy_A 195 ILGAKPG-------------GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD------- 254 (282)
T ss_dssp EEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC----------
T ss_pred eeeecCC-------------CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC-------
Confidence 9999987 789999999999999999999999975 7899999999999999987542
Q ss_pred CCCCCCCCceeeeccCccccCC
Q 004047 614 DGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 614 ~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
.+.....+|+|+||+.+|++
T Consensus 255 --~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 255 --APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp ------CGGGTTCBCCHHHHHH
T ss_pred --CCCccCceeeeEeCHHHHHH
Confidence 23356689999999999986
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=431.89 Aligned_cols=280 Identities=27% Similarity=0.349 Sum_probs=221.6
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.+. +...++|..... .
T Consensus 17 ~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~---------~ 60 (310)
T 2ixt_A 17 DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT---------P 60 (310)
T ss_dssp TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS---------C
T ss_pred hhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC---------C
Confidence 8999999999999999999999999999742 333444443210 0
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
......|..||||||||||+|... .....+.||||+|+|+.+|++.+. | .+..+++++||+|++
T Consensus 61 ~~~~~~d~~gHGT~vAgiia~~~~--------~n~~g~~GvAp~a~l~~~~v~~~~--g------~~~~~~~~~ai~~a~ 124 (310)
T 2ixt_A 61 INNSCTDRNGHGTHVAGTALADGG--------SDQAGIYGVAPDADLWAYKVLLDS--G------SGYSDDIAAAIRHAA 124 (310)
T ss_dssp EETCCCCSSSHHHHHHHHHHCBCC--------TTSCSCBCSCTTSEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHhccCC--------CCCCceEEECCCCEEEEEEEEcCC--C------CCcHHHHHHHHHHHH
Confidence 112356889999999999998741 222335799999999999999876 4 468899999999999
Q ss_pred hCCc-----eEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--cCCCcceeeeccCcccccccc
Q 004047 294 RDGV-----HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVG 366 (777)
Q Consensus 294 ~~gv-----dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~--~~~ap~vitVgAs~~~~~~~~ 366 (777)
++++ +|||||||... ....+..++.++.++|++||+||||+|....+. +...+++|+|||++...
T Consensus 125 ~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~---- 196 (310)
T 2ixt_A 125 DQATATGTKTIISMSLGSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ---- 196 (310)
T ss_dssp HHHHHHTCCEEEEECCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE----
T ss_pred HhhhccCCCeEEEEcCCCCC----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc----
Confidence 9988 99999999832 246677788899999999999999999764333 34458999999854210
Q ss_pred ceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcC
Q 004047 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (777)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~G 446 (777)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCC--ccccccCCCCCCCC-
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAP--FMANFTSRGPNALD- 523 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSS~Gp~~~~- 523 (777)
..+ .++.||++||....
T Consensus 197 ------------------------------------------------------------~~g~~~~~~~S~~G~~~~~g 216 (310)
T 2ixt_A 197 ------------------------------------------------------------QNGTYRVADYSSRGYISTAG 216 (310)
T ss_dssp ------------------------------------------------------------ETTEEEECTTSCCCCTTTTT
T ss_pred ------------------------------------------------------------cCCCeeeccccCCCCccCCc
Confidence 012 67899999995421
Q ss_pred ---CCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcc
Q 004047 524 ---PYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600 (777)
Q Consensus 524 ---d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA 600 (777)
..+.||||+|||++|+++++. +.|..++|||||||||||++|||+|++|.|++.+||++|++||
T Consensus 217 ~~~~~~~~~di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA 283 (310)
T 2ixt_A 217 DYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283 (310)
T ss_dssp SSSCCTTCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred cccccCCCeeEECCCCCEeeecCC-------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Confidence 123599999999999999876 6899999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccCCCCCCCCCCceeeeccCc
Q 004047 601 WMKNNKALPITNADGSIATPFSFGSGHFRP 630 (777)
Q Consensus 601 ~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 630 (777)
++.+..+. .......+..+|+|++|+
T Consensus 284 ~~~~~~~~----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 284 KSVDIKGG----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp HTSCCCBS----TTCCSSSBTTTBTCBCCC
T ss_pred cccCCCCC----cccccCCccccccceeec
Confidence 98764321 112345678899999996
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-51 Score=435.56 Aligned_cols=272 Identities=24% Similarity=0.273 Sum_probs=218.2
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
++|+....++||+|||||||||++||+|.++ .+.+..++..+
T Consensus 12 ~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~------------ 53 (306)
T 4h6w_A 12 KLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSG------------ 53 (306)
T ss_dssp HHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC-----------------
T ss_pred HHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCC------------
Confidence 7999887779999999999999999999753 12222222221
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
+.....|..||||||||||+|+.. +.+.||||+|+|+.+|++.+.. + .+....+++||+||+
T Consensus 54 ~~~~~~d~~gHGThVAGiiag~~~-----------~~~~GVAp~a~l~~~kv~~~~~-~------~~~~~~i~~ai~~a~ 115 (306)
T 4h6w_A 54 EANANGSMSTHGTHVASIIFGQHD-----------SPVTGIAPQCRGLIVPVFADES-L------KLSQLDLSRAIEQAV 115 (306)
T ss_dssp -----CCCCHHHHHHHHHHHCCTT-----------SSSCCSSTTSEEEECCCCCSSS-C------CCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCchHHHHHHHHcccc-----------CCcceeccccccceeecccccc-c------cchHHHHHHHHHHhh
Confidence 112344678999999999998731 2357999999999999987653 2 368888999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCC
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
+++++|||+|||...........+..++..+.++|++||++|||+|......+...+++|+|||++.
T Consensus 116 ~~g~~vi~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~------------- 182 (306)
T 4h6w_A 116 NNGANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD------------- 182 (306)
T ss_dssp HTTCSEEEECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT-------------
T ss_pred cccceeeeccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC-------------
Confidence 9999999999997443444556788888999999999999999999766555556689999998542
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceee
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 533 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~A 533 (777)
.+.+++||++|+. ..||||+|
T Consensus 183 ------------------------------------------------------~~~~~~~s~~g~~-----~~~~di~A 203 (306)
T 4h6w_A 183 ------------------------------------------------------QGKPVDFSNWGDA-----YQKQGILA 203 (306)
T ss_dssp ------------------------------------------------------TSCBCSSSCBCHH-----HHHHEEEE
T ss_pred ------------------------------------------------------CCCccccccccCC-----cCcceeec
Confidence 2467789999973 46899999
Q ss_pred CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHH----CCCCCHHHHHHHHHhcccccCCCCCc
Q 004047 534 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWSSAAIRSALMTTAWMKNNKALP 609 (777)
Q Consensus 534 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s~~~ik~~L~~TA~~~~~~g~~ 609 (777)
||++|+++++. +.|..++|||||||||||++|||+++ +|.++|++||++|++||+++...+
T Consensus 204 PG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~-- 268 (306)
T 4h6w_A 204 PGKDILGAKPN-------------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD-- 268 (306)
T ss_dssp ECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT--
T ss_pred CCcCcccccCC-------------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC--
Confidence 99999999987 78999999999999999999999865 599999999999999999886532
Q ss_pred ccCCCCCCCCCCceeeeccCccccCC
Q 004047 610 ITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 610 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
......||+|+||+.+|++
T Consensus 269 -------~~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 269 -------TDDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp -------CSCGGGGTTCBCCHHHHHH
T ss_pred -------CCCCCCcceeecCHHHHHH
Confidence 2244579999999999997
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=432.51 Aligned_cols=264 Identities=27% Similarity=0.359 Sum_probs=216.5
Q ss_pred ccccccCCCC--ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCC
Q 004047 134 DLLSKARYGQ--DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 211 (777)
Q Consensus 134 ~~~~~g~~G~--GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 211 (777)
.+|..+ +|+ ||+|||||||||++||+|.++ +...++|..+...
T Consensus 19 ~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~------- 63 (320)
T 2z30_A 19 SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS------- 63 (320)
T ss_dssp GGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB-------
T ss_pred HHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCCccC-------
Confidence 789988 999 999999999999999999742 3333444332100
Q ss_pred CCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004047 212 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (777)
Q Consensus 212 ~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 291 (777)
.+.....|..||||||||||+|.. ++ ..+.||||+|+|+.+|+++.. | .+..+++++||+|
T Consensus 64 -~~~~~~~d~~gHGT~vAgiia~~~-n~---------~g~~GvAp~a~l~~~~v~~~~--g------~~~~~~i~~ai~~ 124 (320)
T 2z30_A 64 -TKLRDCADQNGHGTHVIGTIAALN-ND---------IGVVGVAPGVQIYSVRVLDAR--G------SGSYSDIAIGIEQ 124 (320)
T ss_dssp -CCHHHHBCSSSHHHHHHHHHHCCS-SS---------BSCCCSSTTCEEEEEECSCTT--S------EEEHHHHHHHHHH
T ss_pred -CCCCCCCCCCCCHHHHHHHHHccc-CC---------CceEeeCCCCEEEEEEeeCCC--C------CccHHHHHHHHHH
Confidence 001123678999999999999862 11 124699999999999999876 4 4678999999999
Q ss_pred HHhC--------------------CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcc
Q 004047 292 AIRD--------------------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPW 351 (777)
Q Consensus 292 a~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~ 351 (777)
|++. +++|||||||... ....+..++.++.++|++||+||||+|.....++...|+
T Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~ 200 (320)
T 2z30_A 125 AILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPE 200 (320)
T ss_dssp HHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTT
T ss_pred HHhCcccccccccccccccccccCCceEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCC
Confidence 9987 9999999999832 245677778889999999999999999876666666799
Q ss_pred eeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecC
Q 004047 352 LITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRG 431 (777)
Q Consensus 352 vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g 431 (777)
+|+|||++.
T Consensus 201 vi~Vga~~~----------------------------------------------------------------------- 209 (320)
T 2z30_A 201 VIAVGAIDS----------------------------------------------------------------------- 209 (320)
T ss_dssp EEEEEEECT-----------------------------------------------------------------------
T ss_pred eEEEEeeCC-----------------------------------------------------------------------
Confidence 999998542
Q ss_pred CcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCcc
Q 004047 432 SGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFM 511 (777)
Q Consensus 432 ~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 511 (777)
.+.+
T Consensus 210 ----------------------------------------------------------------------------~~~~ 213 (320)
T 2z30_A 210 ----------------------------------------------------------------------------NDNI 213 (320)
T ss_dssp ----------------------------------------------------------------------------TSCB
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 2477
Q ss_pred ccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHC-------
Q 004047 512 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH------- 584 (777)
Q Consensus 512 a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------- 584 (777)
+.||++|| +|+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 214 ~~~S~~g~----------~v~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~ 270 (320)
T 2z30_A 214 ASFSNRQP----------EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKI 270 (320)
T ss_dssp CTTSCSSC----------SEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CcccCCCC----------CEEeCCCCeEEeccC-------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccc
Confidence 89999997 789999999999987 689999999999999999999999999
Q ss_pred ------CCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCC
Q 004047 585 ------PDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 585 ------P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 636 (777)
|.+++.+||++|++||+++... ..+..||+|+||+.+|++.
T Consensus 271 ~~~~~~p~lt~~~v~~~L~~ta~~~~~~-----------g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 271 LPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp CCCCCTTCCSTTSHHHHHHHHSBCCSSS-----------SSBTTTBTCBCCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcCCceeCHHHHHHH
Confidence 9999999999999999987532 2456799999999999874
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=434.17 Aligned_cols=269 Identities=20% Similarity=0.126 Sum_probs=214.4
Q ss_pred ccccccCCCC--ceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCC
Q 004047 134 DLLSKARYGQ--DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 211 (777)
Q Consensus 134 ~~~~~g~~G~--GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 211 (777)
.+|.. ++|+ ||+||||||||| +||+|.++ ++..++|..+..
T Consensus 34 ~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~~-------- 76 (347)
T 2iy9_A 34 ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDGS-------- 76 (347)
T ss_dssp HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTCC--------
T ss_pred HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCCC--------
Confidence 78987 8999 999999999999 99999642 333444443200
Q ss_pred CCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004047 212 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (777)
Q Consensus 212 ~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 291 (777)
......+.|..||||||||||+|+. | +.||||+|+|+.+|++++. + .. ++++||+|
T Consensus 77 ~~~~~~~~d~~gHGT~vAgiia~~~--------g-----~~GvAp~a~l~~~~v~~~~--~-------~~--~~~~ai~~ 132 (347)
T 2iy9_A 77 PFPVKKSEALYIHGTAMASLIASRY--------G-----IYGVYPHALISSRRVIPDG--V-------QD--SWIRAIES 132 (347)
T ss_dssp SSCCSSSHHHHHHHHHHHHHHHCSS--------S-----SCCSSTTCEEEEEECCSSB--C-------TT--HHHHHHHH
T ss_pred CCCCCCCCCCCCcHHHHHHHHhccc--------C-----CcccCCCCEEEEEEEecCC--C-------HH--HHHHHHHH
Confidence 0011245678899999999999861 2 3699999999999999765 2 22 99999999
Q ss_pred HHhC------CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCC-------CCCcCCCc--------
Q 004047 292 AIRD------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-------SSLSNLAP-------- 350 (777)
Q Consensus 292 a~~~------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~-------~~~~~~ap-------- 350 (777)
|+++ |++|||||||... .....+.+..++..+.++|++||+||||+|... ..++...+
T Consensus 133 a~~~~~~~~~~~~Vin~S~G~~~-~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~ 211 (347)
T 2iy9_A 133 IMSNVFLAPGEEKIINISGGQKG-VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKK 211 (347)
T ss_dssp HHTCTTSCTTEEEEEEESSCBCC-C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHH
T ss_pred HHhhhhcccCCceEEEeccccCC-CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccc
Confidence 9999 9999999999732 234567788888999999999999999999753 23334457
Q ss_pred --ceeeeccCcc--ccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEE
Q 004047 351 --WLITVGAGSL--DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIV 426 (777)
Q Consensus 351 --~vitVgAs~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~iv 426 (777)
++|+|||++. +....
T Consensus 212 ~~~vi~Vga~~~~~~g~~~------------------------------------------------------------- 230 (347)
T 2iy9_A 212 QDPVIRVAALAQYRKGETP------------------------------------------------------------- 230 (347)
T ss_dssp TCCEEEEEEECCCCTTSCC-------------------------------------------------------------
T ss_pred cCCEEEEEEcccCCCCcee-------------------------------------------------------------
Confidence 8999998653 11000
Q ss_pred EEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecC
Q 004047 427 LCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQ 506 (777)
Q Consensus 427 l~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 506 (777)
.
T Consensus 231 -------------------------------------------------------------------------------~ 231 (347)
T 2iy9_A 231 -------------------------------------------------------------------------------V 231 (347)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC
Q 004047 507 PAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD 586 (777)
Q Consensus 507 ~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ 586 (777)
..+.++.||++||+ ||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+
T Consensus 232 ~~~~~~~fS~~G~~-------~~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~ 291 (347)
T 2iy9_A 232 LHGGGITGSRFGNN-------WVDIAAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMTSCNPR 291 (347)
T ss_dssp BCCCSSSCBCBCTT-------TCSEEEECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccCCCCCCCCCCCC-------CCEEEeCCCCeEeecCC-------------CCeEeccchHHHHHHHHHHHHHHHHhCCC
Confidence 01355799999995 67999999999999986 78999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCC
Q 004047 587 WSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 587 ~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 636 (777)
+++.+||++|++||++.... .+..+|+|+||+.+|++.
T Consensus 292 lt~~~v~~~L~~tA~~~~~~------------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 292 ATATELKRTLLESADKYPSL------------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp SCHHHHHHHHHHHSEECGGG------------TTTSGGGEECCHHHHHHH
T ss_pred CCHHHHHHHHHHhCccCCCC------------CCccccCCEecHHHHHHH
Confidence 99999999999999987643 235899999999999984
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-49 Score=441.26 Aligned_cols=293 Identities=27% Similarity=0.301 Sum_probs=222.8
Q ss_pred cccc-ccCCCCceEEEEeecCCCC------CCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeeccccccccc
Q 004047 134 DLLS-KARYGQDVIVGLVDNGVWP------ESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLY 206 (777)
Q Consensus 134 ~~~~-~g~~G~GV~VgVIDtGid~------~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~ 206 (777)
.+|. .+++|+||+|||||||||+ .||+|.++ ++..++|.+.
T Consensus 12 ~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~---------------------------i~~~~~~~~~----- 59 (434)
T 1wmd_A 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK---------------------------ITALYALGRT----- 59 (434)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC---------------------------EEEEEETTTT-----
T ss_pred hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC---------------------------EeeeccccCC-----
Confidence 7887 7999999999999999999 79998632 3333444321
Q ss_pred CCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHH
Q 004047 207 GPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADML 286 (777)
Q Consensus 207 ~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~ 286 (777)
..+.|..||||||||||+|+. . .+.||||+|+|+.+|+++..... ....+++.
T Consensus 60 ---------~~~~d~~gHGT~VAgiiag~g---------~---~~~GvAp~a~l~~~~v~~~~g~~------~~~~~~~~ 112 (434)
T 1wmd_A 60 ---------NNANDTNGHGTHVAGSVLGNG---------S---TNKGMAPQANLVFQSIMDSGGGL------GGLPSNLQ 112 (434)
T ss_dssp ---------TCCCCSSSHHHHHHHHHHCCS---------S---SSCCSSTTSEEEEEECCCTTSSC------TTSCSSHH
T ss_pred ---------CCCCCCCCcHHHHHHHHHcCC---------C---CceeeCCCCEEEEEEeecCCCcc------ccccHHHH
Confidence 246788999999999999862 1 14699999999999999765211 12456799
Q ss_pred HHHHHHHhCCceEEEeecCCCCCCCCCccHHHHHHHHH-HhCCcEEEEecCCCCCCCCCCc--CCCcceeeeccCccccc
Q 004047 287 AAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA-VKHNILVACSAGNSGPAPSSLS--NLAPWLITVGAGSLDRD 363 (777)
Q Consensus 287 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~aAGN~G~~~~~~~--~~ap~vitVgAs~~~~~ 363 (777)
++|+++++.|++|||||||...... .+....+++++ .++|++||+||||+|....++. ..++++|+|||++..+.
T Consensus 113 ~ai~~a~~~g~~Vin~S~G~~~~~~--~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~ 190 (434)
T 1wmd_A 113 TLFSQAYSAGARIHTNSWGAAVNGA--YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRP 190 (434)
T ss_dssp HHHHHHHHTTCSEEEECCCBCCTTC--CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCG
T ss_pred HHHHHHHhcCCeEEEecCCCCcCCc--CCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCc
Confidence 9999999999999999999843111 23455555655 6899999999999997654444 34689999999764321
Q ss_pred cccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHh
Q 004047 364 FVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVK 443 (777)
Q Consensus 364 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~ 443 (777)
..
T Consensus 191 ~~------------------------------------------------------------------------------ 192 (434)
T 1wmd_A 191 SF------------------------------------------------------------------------------ 192 (434)
T ss_dssp GG------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred hcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCC
Q 004047 444 RAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALD 523 (777)
Q Consensus 444 ~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 523 (777)
|. .....+.+++||||||+.
T Consensus 193 --~~--------------------------------------------------------~~~~~~~~a~fS~~G~~~-- 212 (434)
T 1wmd_A 193 --GS--------------------------------------------------------YADNINHVAQFSSRGPTK-- 212 (434)
T ss_dssp --CG--------------------------------------------------------GGSCTTSBCTTSCCCCCT--
T ss_pred --Cc--------------------------------------------------------ccCCCCccccccCCCCCC--
Confidence 00 001145899999999997
Q ss_pred CCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCC-----CHHHHHHHHHh
Q 004047 524 PYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW-----SSAAIRSALMT 598 (777)
Q Consensus 524 d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~-----s~~~ik~~L~~ 598 (777)
++++||||+|||++|+++++........ .....+.|..++|||||||||||++|||+|++|++ ++++||++|++
T Consensus 213 ~g~~kpdi~ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~ 291 (434)
T 1wmd_A 213 DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIA 291 (434)
T ss_dssp TSCCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred CCCCCceEEcCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHc
Confidence 6999999999999999998653210000 00113689999999999999999999999999865 89999999999
Q ss_pred cccccCCCCCcccCCCCCCCCCCceeeeccCccccCCCC
Q 004047 599 TAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPG 637 (777)
Q Consensus 599 TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 637 (777)
||+++.. ..+++.||||++|+.+|++..
T Consensus 292 tA~~~~~-----------~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 292 GAADIGL-----------GYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp HCBCCSS-----------CSSCTTTTTCBCCHHHHHTCE
T ss_pred CCcccCC-----------CCCCccCCcCeEeHHHhcccc
Confidence 9987532 236788999999999999754
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=469.08 Aligned_cols=355 Identities=22% Similarity=0.191 Sum_probs=243.8
Q ss_pred CCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh----
Q 004047 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR---- 294 (777)
Q Consensus 219 ~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~---- 294 (777)
.|++||||||||||||.. + ...+.||||+|+|+.+|+++..... ....+.++.+|.+|++
T Consensus 267 ~D~~GHGThVAGIIAa~~-N---------~~g~~GVAP~AkI~~vKVld~~~g~------~~t~s~l~~AI~~Aid~a~~ 330 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-S---------SRDVDGVAPNAKIVSMTIGDGRLGS------METGTALVRAMTKVMELCRD 330 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-S---------SSSSCCSCTTCEEEEEECBCTTTSS------CBCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHhcCC-C---------CCCceeecCCCEEEEEEeccCCCCc------ccChHHHHHHHHHHHHHHhh
Confidence 478999999999999984 2 2234699999999999998765211 2366778888888887
Q ss_pred -CCceEEEeecCCCCCCCCCccHHHHHHHHHH-hCCcEEEEecCCCCCCCCCCcCC----CcceeeeccCccccccccce
Q 004047 295 -DGVHVLSISIGTNQPFAFNRDGIAIGALNAV-KHNILVACSAGNSGPAPSSLSNL----APWLITVGAGSLDRDFVGPV 368 (777)
Q Consensus 295 -~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~-~~Gi~vV~aAGN~G~~~~~~~~~----ap~vitVgAs~~~~~~~~~~ 368 (777)
.|++|||||||... .....+.+..++.++. ++|++||+||||+|+...++..+ .+++|+|||++.........
T Consensus 331 ~~gadVINmS~G~~~-~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~y 409 (1354)
T 3lxu_X 331 GRRIDVINMSYGEHA-NWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEY 409 (1354)
T ss_dssp TCCCCEEEECCCCCC-SCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC--
T ss_pred cCCceEEEcCCccCC-CCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccc
Confidence 79999999999943 2233456777777775 89999999999999875554332 59999999976433111000
Q ss_pred EeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCce
Q 004047 369 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 448 (777)
Q Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~ 448 (777)
..
T Consensus 410 s~------------------------------------------------------------------------------ 411 (1354)
T 3lxu_X 410 AM------------------------------------------------------------------------------ 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcC
Q 004047 449 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 528 (777)
Q Consensus 449 gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~K 528 (777)
.....+.++.||||||+. ++++|
T Consensus 412 -------------------------------------------------------~~~~~g~~asFSS~GPt~--dg~~K 434 (1354)
T 3lxu_X 412 -------------------------------------------------------REKLPGNVYTWTSRDPCI--DGGQG 434 (1354)
T ss_dssp -------------------------------------------------------------CCCCCCCCSCCS--SSSCC
T ss_pred -------------------------------------------------------ccCCCCccccccCCCCCc--cCCCc
Confidence 001135889999999997 69999
Q ss_pred CceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHH----HCCCCCHHHHHHHHHhcccccC
Q 004047 529 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMKN 604 (777)
Q Consensus 529 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~~ 604 (777)
|||+|||++|+++..... +.|..++|||||||||||++|||++ .+|.+++.+||++|++||++.+
T Consensus 435 pDIaAPG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~ 503 (1354)
T 3lxu_X 435 VTVCAPGGAIASVPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLG 503 (1354)
T ss_dssp EEEEEEC--------------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCT
T ss_pred ceEEecCceEEEeecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999865421 6799999999999999999999987 7999999999999999999875
Q ss_pred CCCCcccCCCCCCCCCCceeeeccCccccCCCCceeeCchhhHHHhhhcCCCCCCCCcccCCCCCCCCCCCCCCeeEeec
Q 004047 605 NKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPN 684 (777)
Q Consensus 605 ~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~ 684 (777)
. .+++.||+|+||+.+|++..+.|+..+.+++.|+|..+.++.. .|.+.+
T Consensus 504 ~------------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~r------------------gIylR~ 553 (1354)
T 3lxu_X 504 Y------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK------------------GIHLRQ 553 (1354)
T ss_dssp T------------SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBS------------------SEEECS
T ss_pred C------------CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCC------------------ceEEec
Confidence 4 2567899999999999999999999999999999988754320 111111
Q ss_pred --CCceEEEEEEEE----ecCC--C--Ce--eEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECcccccccCCC
Q 004047 685 --LNGTVIVKRTVT----NVGG--S--KS--VYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTK 752 (777)
Q Consensus 685 --~~~~~t~~~tvt----n~~~--~--~~--ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 752 (777)
.....+++++|+ |... . .. .-++.+.... --|. -|..+.+ .++.++|.|.|++. .. ..
T Consensus 554 ~~~~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~-----~L-~~ 623 (1354)
T 3lxu_X 554 GVQRNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPT-----GL-QP 623 (1354)
T ss_dssp SCCCSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGG-----GC-CS
T ss_pred cccCCceEEEEEEeeeecCcccCChhhccceEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECCC-----CC-CC
Confidence 112334444432 2111 1 11 1222222211 1233 3777776 36678899998883 33 44
Q ss_pred ceEEEEEEEEC-----CccEEEeeEEEEe
Q 004047 753 QYVFGWYRWTD-----GLHLVRSPMAVSF 776 (777)
Q Consensus 753 ~~~~G~~~~~~-----~~~~v~~P~~~~~ 776 (777)
+.+++.|...| -++..|+|+.|..
T Consensus 624 G~h~~~v~~~D~~~~~~gp~f~ipvTv~~ 652 (1354)
T 3lxu_X 624 GVHSAVIRAYDTDCVQKGSLFEIPVTVVQ 652 (1354)
T ss_dssp EEEEEEEEEEESSCTTSCCSEEEEEEEEE
T ss_pred cceeEEEEEEEcCCcccCceEEeeEEEEe
Confidence 56689998775 2699999998853
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-49 Score=427.82 Aligned_cols=297 Identities=22% Similarity=0.280 Sum_probs=217.3
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccce---eeeeeecccccccccCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKK---IIGARYYLKGFEQLYGPLN 210 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~k---iig~~~~~~~~~~~~~~~~ 210 (777)
.+|+.+++|+||+||||||||+ +||+|.++-. .+.............+.+ ......+.+.+... +
T Consensus 23 ~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~-------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~--- 90 (340)
T 3lpc_A 23 KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVL-------PGYDFISNSQISLDGDGRDADPFDEGDWFDNWACG-G--- 90 (340)
T ss_dssp HHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBC-------CCEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTS-C---
T ss_pred HHHHhcCCCCCeEEEEEcCCCC-CChhhhcccc-------cCccccCCccccccCCCccCCcccccccccccccc-C---
Confidence 8999999999999999999998 9999975311 111110000000000000 00000000000000 0
Q ss_pred CCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHH
Q 004047 211 ATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 290 (777)
Q Consensus 211 ~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~ 290 (777)
.+.+.....|..||||||||||+|...+. ..+.||||+|+|+.+|++... + +..+++++||+
T Consensus 91 ~~~~~~~~~d~~gHGT~vAgiia~~~~~~---------~g~~GvAp~a~l~~~~v~~~~--~-------~~~~~~~~ai~ 152 (340)
T 3lpc_A 91 RPDPRKERSDSSWHGSHVAGTIAAVTNNR---------IGVAGVAYGAKVVPVRALGRC--G-------GYDSDISDGLY 152 (340)
T ss_dssp TTCGGGSCBCCCCHHHHHHHHHHCCCSSS---------SSCCCTTTTSEEEEEECCBTT--B-------CCHHHHHHHHH
T ss_pred CCCcccCCCCCCCCHHHHHHHHHccCCCC---------CcceeecCCCEEEEEEEecCC--C-------CcHHHHHHHHH
Confidence 00112245788999999999999974322 224699999999999999876 4 68899999999
Q ss_pred HHHh----------CCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCcCCCcceeeeccCc
Q 004047 291 DAIR----------DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGS 359 (777)
Q Consensus 291 ~a~~----------~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~-~~~~~ap~vitVgAs~ 359 (777)
|+++ .+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++
T Consensus 153 ~a~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~ 229 (340)
T 3lpc_A 153 WAAGGRIAGIPENRNPAKVINMSLGSDG---QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT 229 (340)
T ss_dssp HHHTCCCTTSCCCSSCCSEEEECCCEES---CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC
T ss_pred HHhcccccccccccCCCeEEEeCcCCCC---CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC
Confidence 9998 89999999999832 23455677788899999999999999996543 2344568999999854
Q ss_pred cccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhh
Q 004047 360 LDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 439 (777)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~ 439 (777)
.
T Consensus 230 ~------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 230 S------------------------------------------------------------------------------- 230 (340)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCC
Q 004047 440 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 519 (777)
Q Consensus 440 ~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 519 (777)
.+.++.||++||
T Consensus 231 --------------------------------------------------------------------~~~~~~~S~~g~ 242 (340)
T 3lpc_A 231 --------------------------------------------------------------------RGIRASFSNYGV 242 (340)
T ss_dssp --------------------------------------------------------------------TSSBCTTCCBST
T ss_pred --------------------------------------------------------------------CCCcCCCCCCCC
Confidence 247889999998
Q ss_pred CCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHH-C---CCCCHHHHHHH
Q 004047 520 NALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI-H---PDWSSAAIRSA 595 (777)
Q Consensus 520 ~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---P~~s~~~ik~~ 595 (777)
||||+|||.+|+++++..... .....|..++|||||||||||++|||+|+ + |.+++++||++
T Consensus 243 --------~~di~ApG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~ 308 (340)
T 3lpc_A 243 --------DVDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDV 308 (340)
T ss_dssp --------TCCEEEECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------CceEEecCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHH
Confidence 459999999999998763311 11246999999999999999999999998 5 99999999999
Q ss_pred HHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCC
Q 004047 596 LMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 596 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 636 (777)
|++||+++.. .++..||+|+||+.+||+.
T Consensus 309 L~~tA~~~~~------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 309 LVSTTSPFNG------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp HHHTCBCCSS------------CCSSCCCSSBCCHHHHHHH
T ss_pred HHhcCCcCCC------------CCCCCcccceecHHHHHHH
Confidence 9999998753 2456899999999999874
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=405.76 Aligned_cols=236 Identities=24% Similarity=0.346 Sum_probs=200.4
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.++ ++..++|.+.
T Consensus 20 ~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~------------ 60 (284)
T 1sh7_A 20 RNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------SVSGYDFVDN------------ 60 (284)
T ss_dssp SBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------------EEEEEETTTT------------
T ss_pred hhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------------ccccccccCC------------
Confidence 7899999999999999999999999999742 3334445432
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..||||||||||+|+. .||||+|+|+.+|++++. | .+..+++++||+|++
T Consensus 61 -~~~~~d~~gHGT~vAgiia~~~---------------~GvAp~a~l~~~kv~~~~--g------~~~~~~~~~ai~~a~ 116 (284)
T 1sh7_A 61 -DADSSDCNGHGTHVAGTIGGSQ---------------YGVAKNVNIVGVRVLSCS--G------SGTTSGVISGVDWVA 116 (284)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEEEECBCTT--S------CBCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCcHHHHHHHHhccc---------------CCcCCCCEEEEEEeeCCC--C------CcCHHHHHHHHHHHH
Confidence 1246688999999999999862 499999999999999876 4 468899999999999
Q ss_pred h--CCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCcCCCcceeeeccCccccccccceEe
Q 004047 294 R--DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPVVL 370 (777)
Q Consensus 294 ~--~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~-~~~~~ap~vitVgAs~~~~~~~~~~~~ 370 (777)
+ .+++|||||||.. ....+..++.++.++|++||+||||+|.... ..+...|++|+|||++.
T Consensus 117 ~~~~~~~Vin~S~G~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 181 (284)
T 1sh7_A 117 QNASGPSVANMSLGGG-----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS---------- 181 (284)
T ss_dssp HHCCSSEEEEECCCBS-----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT----------
T ss_pred hCCCCCcEEEeCCCCC-----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC----------
Confidence 7 4799999999983 3467788888999999999999999996532 23445689999998542
Q ss_pred CCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEE
Q 004047 371 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 450 (777)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gv 450 (777)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCc
Q 004047 451 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 530 (777)
Q Consensus 451 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPD 530 (777)
.+.++.||++||.. |
T Consensus 182 ---------------------------------------------------------~~~~~~~S~~G~~~--------d 196 (284)
T 1sh7_A 182 ---------------------------------------------------------SDSRSSFSNWGSCV--------D 196 (284)
T ss_dssp ---------------------------------------------------------TSBBCTTCCBSTTC--------C
T ss_pred ---------------------------------------------------------CCCcCcccCCCCcc--------E
Confidence 24778999999965 9
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCC
Q 004047 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNN 605 (777)
Q Consensus 531 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~ 605 (777)
|+|||++|+++++. +.|..++|||||||||||++|||+|++|++++++||++|++||++...
T Consensus 197 i~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 258 (284)
T 1sh7_A 197 LFAPGSQIKSAWYD-------------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKV 258 (284)
T ss_dssp EEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred EEeccCCeEEecCC-------------CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCc
Confidence 99999999999876 689999999999999999999999999999999999999999997653
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=401.06 Aligned_cols=236 Identities=25% Similarity=0.347 Sum_probs=200.3
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.++ +...++|..
T Consensus 22 ~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------- 61 (276)
T 4dzt_A 22 NSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGYDALG------------- 61 (276)
T ss_dssp SCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTS-------------
T ss_pred cceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccccCCC-------------
Confidence 7899999999999999999999999999642 233333332
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
....|..||||||||||+|.. .||||+|+|+.+|++++. + ....+.++++|+|++
T Consensus 62 --~~~~d~~gHGT~vAgiiag~~---------------~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~ai~~~~ 116 (276)
T 4dzt_A 62 --GNGQDCNGHGTHVAGTIGGVT---------------YGVAKAVNLYAVRVLDCN--G------SGSTSGVIAGVDWVT 116 (276)
T ss_dssp --SCSCCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred --CCCCCCCCCHHHHHHHHHccc---------------cCCCCCCEEEEEEEeCCC--C------CcCHHHHHHHHHHHH
Confidence 145678999999999999862 499999999999999876 4 478899999999999
Q ss_pred hC--CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC-cCCCcceeeeccCccccccccceEe
Q 004047 294 RD--GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL-SNLAPWLITVGAGSLDRDFVGPVVL 370 (777)
Q Consensus 294 ~~--gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~-~~~ap~vitVgAs~~~~~~~~~~~~ 370 (777)
+. +++|||||||.. ....+..++.++.++|+++|+||||+|...... +...+++|+|||++.
T Consensus 117 ~~~~~~~vin~S~g~~-----~~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 181 (276)
T 4dzt_A 117 RNHRRPAVANMSLGGG-----VSTALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS---------- 181 (276)
T ss_dssp HHCCSSEEEEECCCEE-----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------
T ss_pred hcCCCCeEEEECCCCC-----CCHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC----------
Confidence 86 999999999982 246778888999999999999999999654332 345688999998542
Q ss_pred CCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEE
Q 004047 371 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 450 (777)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gv 450 (777)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCc
Q 004047 451 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 530 (777)
Q Consensus 451 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPD 530 (777)
.+.++.||++||.. |
T Consensus 182 ---------------------------------------------------------~~~~~~~S~~g~~~--------d 196 (276)
T 4dzt_A 182 ---------------------------------------------------------SDARASFSNYGSCV--------D 196 (276)
T ss_dssp ---------------------------------------------------------TSBBCTTCCBSTTC--------C
T ss_pred ---------------------------------------------------------CCCcCCcCCCCCCc--------e
Confidence 34788999999976 9
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCC
Q 004047 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNN 605 (777)
Q Consensus 531 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~ 605 (777)
|+|||++|+++++... ..|..++|||||||+|||++|||+|++|++++++||++|++||++...
T Consensus 197 v~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 197 LFAPGASIPSAWYTSD-----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp EEEECSSEEEECTTSS-----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred EEeCCCCeEccccCCC-----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 9999999999987632 579999999999999999999999999999999999999999998754
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-47 Score=399.94 Aligned_cols=237 Identities=26% Similarity=0.341 Sum_probs=198.7
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.++ +...++|.++
T Consensus 22 ~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~~~~------------ 62 (278)
T 2b6n_A 22 NNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDFIDN------------ 62 (278)
T ss_dssp SEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTTT------------
T ss_pred hhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeecCCC------------
Confidence 6899999999999999999999999999742 2333444432
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..||||||||||+|.. .||||+|+|+.+|++++. + .+..+++++||+|++
T Consensus 63 -~~~~~d~~gHGT~vAgiia~~~---------------~GvAp~a~i~~~~v~~~~--g------~~~~~~~~~ai~~a~ 118 (278)
T 2b6n_A 63 -DYDATDCNGHGTHVAGTIGGST---------------YGVAKNVNVVGVRVLNCS--G------SGSNSGVIAGINWVK 118 (278)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCcHHHHHHHHHCCC---------------cCCCCCCeEEEEEEECCC--C------CccHHHHHHHHHHHH
Confidence 1245688999999999999861 499999999999999876 4 468899999999999
Q ss_pred h--CCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC-CcCCCcceeeeccCccccccccceEe
Q 004047 294 R--DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS-LSNLAPWLITVGAGSLDRDFVGPVVL 370 (777)
Q Consensus 294 ~--~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~-~~~~ap~vitVgAs~~~~~~~~~~~~ 370 (777)
+ .+++|||||||... .+.+..++.++.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 119 ~~~~g~~Vin~S~G~~~-----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 183 (278)
T 2b6n_A 119 NNASGPAVANMSLGGGA-----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS---------- 183 (278)
T ss_dssp HHCCSSEEEEECCCEEC-----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------
T ss_pred hCCCCCeEEEECCCCCc-----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC----------
Confidence 7 59999999999822 4667788889999999999999999965432 2345689999998542
Q ss_pred CCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEE
Q 004047 371 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 450 (777)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gv 450 (777)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCc
Q 004047 451 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 530 (777)
Q Consensus 451 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPD 530 (777)
.+.++.||++||.. |
T Consensus 184 ---------------------------------------------------------~~~~~~~S~~G~~~--------d 198 (278)
T 2b6n_A 184 ---------------------------------------------------------NDSRSSFSNYGTCL--------D 198 (278)
T ss_dssp ---------------------------------------------------------TSBBCTTCCBSTTC--------C
T ss_pred ---------------------------------------------------------CCCcCCcCCCCCCC--------e
Confidence 24778999999854 9
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccC
Q 004047 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKN 604 (777)
Q Consensus 531 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~ 604 (777)
|+|||++|+++++... +.|..++|||||||||||++|||+|++|++++++||++|++||++..
T Consensus 199 i~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 199 IYAPGSSITSSWYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp EEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred EEeCCCCeECcccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 9999999999986522 57899999999999999999999999999999999999999998754
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=402.20 Aligned_cols=240 Identities=28% Similarity=0.319 Sum_probs=200.8
Q ss_pred cccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCC
Q 004047 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (777)
Q Consensus 135 ~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 214 (777)
.|. ..+|+||+|+|||||||++||+|.++ +...++|..
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~~-------------- 61 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYYY-------------- 61 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESSS--------------
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCCC--------------
Confidence 454 48999999999999999999999742 233334431
Q ss_pred CCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004047 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (777)
Q Consensus 215 ~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 294 (777)
.+.|..||||||||||+|+ ..||||+|+|+.+|++++. | .+..+++++||+|+++
T Consensus 62 --~~~d~~gHGT~vAgiia~~---------------~~GvAp~a~i~~~~v~~~~--g------~~~~~~~~~ai~~a~~ 116 (279)
T 2pwa_A 62 --SSRDGNGHGTHCAGTVGSR---------------TYGVAKKTQLFGVKVLDDN--G------SGQYSTIIAGMDFVAS 116 (279)
T ss_dssp --CSSCSSSHHHHHHHHHHCT---------------TTCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHHH
T ss_pred --CCCCCCCCHHHHHHHHHhc---------------ccccCCCCEEEEEEeEcCC--C------CcCHHHHHHHHHHHHh
Confidence 3567899999999999986 1599999999999999876 4 4788999999999999
Q ss_pred CCc-------eEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC-CcCCCcceeeeccCcccccccc
Q 004047 295 DGV-------HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS-LSNLAPWLITVGAGSLDRDFVG 366 (777)
Q Consensus 295 ~gv-------dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~-~~~~ap~vitVgAs~~~~~~~~ 366 (777)
+++ +|||||||.. ..+.+..++.++.++|++||+||||+|..... .+...|++|+|||++.
T Consensus 117 ~~~~~~~~~~~Vin~S~G~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------ 185 (279)
T 2pwa_A 117 DKNNRNCPKGVVASLSLGGG-----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR------ 185 (279)
T ss_dssp HGGGSCCTTEEEEEECCCEE-----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT------
T ss_pred cCccccCCCccEEEecCCCC-----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC------
Confidence 887 9999999982 34678888889999999999999999975432 3345689999998542
Q ss_pred ceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcC
Q 004047 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (777)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~G 446 (777)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 526 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~ 526 (777)
.+.++.||++||..
T Consensus 186 -------------------------------------------------------------~~~~~~~S~~G~~~----- 199 (279)
T 2pwa_A 186 -------------------------------------------------------------YDRRSSFSNYGSVL----- 199 (279)
T ss_dssp -------------------------------------------------------------TSBBCTTCCBSTTC-----
T ss_pred -------------------------------------------------------------CCCcCCcCCCCCcc-----
Confidence 24788999999964
Q ss_pred cCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCC
Q 004047 527 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNK 606 (777)
Q Consensus 527 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~ 606 (777)
||+|||++|+++++. +.|..++|||||||||||++|||+|+ |.+++.+||++|++||++...
T Consensus 200 ---di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~- 261 (279)
T 2pwa_A 200 ---DIFGPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL- 261 (279)
T ss_dssp ---CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC-
T ss_pred ---eEEEecCCeEEeecC-------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc-
Confidence 999999999999987 68999999999999999999999999 999999999999999997642
Q ss_pred CCcccCCCCCCCCCCceeeeccCc
Q 004047 607 ALPITNADGSIATPFSFGSGHFRP 630 (777)
Q Consensus 607 g~~~~~~~~~~~~~~~~G~G~vn~ 630 (777)
..+|+|.+|+
T Consensus 262 --------------~~~~~g~~n~ 271 (279)
T 2pwa_A 262 --------------SNIPFGTVNL 271 (279)
T ss_dssp --------------BSCCTTSCCE
T ss_pred --------------CCCCCCCccE
Confidence 2367777776
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=422.50 Aligned_cols=291 Identities=14% Similarity=0.082 Sum_probs=214.0
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.++-. ....++|.+.... + .
T Consensus 29 ~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~~~------p-~ 76 (471)
T 1p8j_A 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD-------------------------PGASFDVNDQDPD------P-Q 76 (471)
T ss_dssp HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC-------------------------GGGCEETTTTBSC------C-C
T ss_pred HHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC-------------------------ccCcccccCCCCC------C-C
Confidence 899999999999999999999999999974310 0012333332100 0 0
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
+...+.|..||||||||||+|...++. .+.||||+|+|+.+|+++ | ..+++++|+++++
T Consensus 77 ~~~~~~d~~gHGT~vAGiiaa~~~n~~---------g~~GvAp~a~i~~~rv~~----g--------~~~~~~~ai~~a~ 135 (471)
T 1p8j_A 77 PRYTQMNDNRHGTRCAGEVAAVANNGV---------CGVGVAYNARIGGVRMLD----G--------EVTDAVEARSLGL 135 (471)
T ss_dssp CCCCTTCTTCHHHHHHHHHHCCSSSSS---------SCCCTTTTSEEEEEECSS----S--------CCCHHHHHHHHTS
T ss_pred CccCCCCCCCcHHHHHHHHHeeccCCC---------CCEEECCCCeEEEEEccC----C--------chhHHHHHHHhhh
Confidence 112456889999999999999743221 246999999999999985 2 3567999999999
Q ss_pred h-CCceEEEeecCCCCCCC---CCccHHHHHHHHHHh-----CCcEEEEecCCCCCCCCCC----cCCCcceeeeccCcc
Q 004047 294 R-DGVHVLSISIGTNQPFA---FNRDGIAIGALNAVK-----HNILVACSAGNSGPAPSSL----SNLAPWLITVGAGSL 360 (777)
Q Consensus 294 ~-~gvdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~aAGN~G~~~~~~----~~~ap~vitVgAs~~ 360 (777)
+ ++++|||||||...... .....+..++.++.+ +|++||+||||+|...... ...++++|+|||++.
T Consensus 136 ~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~ 215 (471)
T 1p8j_A 136 NPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ 215 (471)
T ss_dssp CTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT
T ss_pred ccCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC
Confidence 9 99999999999843211 122334445555543 6999999999999653221 123478999998542
Q ss_pred ccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhH
Q 004047 361 DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 440 (777)
Q Consensus 361 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~ 440 (777)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCC
Q 004047 441 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPN 520 (777)
Q Consensus 441 ~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 520 (777)
.+.++.||++||.
T Consensus 216 -------------------------------------------------------------------~g~~a~~S~~g~~ 228 (471)
T 1p8j_A 216 -------------------------------------------------------------------FGNVPWYSEACSS 228 (471)
T ss_dssp -------------------------------------------------------------------TSCCCTTCCBCTT
T ss_pred -------------------------------------------------------------------CCCcccccCCCCc
Confidence 2477899999998
Q ss_pred CCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcc
Q 004047 521 ALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600 (777)
Q Consensus 521 ~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA 600 (777)
.. ...+|...+||.+|+++.+.. ..|..++|||||||||||++|||+|++|+|++++||++|++||
T Consensus 229 ~~--~~~~~~~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA 294 (471)
T 1p8j_A 229 TL--ATTYSSGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTS 294 (471)
T ss_dssp CC--EEEECCCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHC
T ss_pred ce--EEeCCCCCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcC
Confidence 63 445666667778999997641 4689999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccCCCCCCCCCCceeeeccCccccCCCCc
Q 004047 601 WMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGL 638 (777)
Q Consensus 601 ~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 638 (777)
++.+...............+..||||+||+.+|++...
T Consensus 295 ~~~~~~~~~~~~n~~g~~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 295 KPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp BCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHHHHH
T ss_pred ccCCCCCCCceecCCCcccCCCCCCEEEcHhHHHHHhh
Confidence 98865322221111112245689999999999998544
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-46 Score=414.71 Aligned_cols=275 Identities=21% Similarity=0.198 Sum_probs=199.1
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
..|..+++|+||+|+|||||||++||+|.++- ......+... ..+ ..
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~--------------------------~~~~~~~v~~---~dg----~~ 63 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV--------------------------MVTDFENVPE---EDG----TR 63 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTE--------------------------EEEEEECCCC---CC-------
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccc--------------------------cccCcccccC---CCC----cc
Confidence 57888999999999999999999999997531 0001111100 000 00
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
....+.|..||||||||||+|+. .||||+|+|+.+|++++. | .+..+++++||+|++
T Consensus 64 f~~~~~D~~GHGThVAGIIag~~---------------~GVAP~A~L~~vkVl~~~--G------~g~~s~ii~ai~~a~ 120 (546)
T 2qtw_B 64 FHRQASKCDSHGTHLAGVVSGRD---------------AGVAKGASMRSLRVLNCQ--G------KGTVSGTLIGLEFIR 120 (546)
T ss_dssp ----CTTTTHHHHHHHHHHHCTT---------------TCSSTTCEEEEEECSCTT--S------EEEHHHHHHHHHHHH
T ss_pred ccCCCCCCCChHHHHHHHHhccC---------------CCcCCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHH
Confidence 01245688999999999999872 499999999999999876 4 467899999999999
Q ss_pred hC------CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC-CcCCCcceeeeccCcccccccc
Q 004047 294 RD------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS-LSNLAPWLITVGAGSLDRDFVG 366 (777)
Q Consensus 294 ~~------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~-~~~~ap~vitVgAs~~~~~~~~ 366 (777)
+. +++|||||||+. ....+..++.++.++|++||+||||+|.+... .+...|++|+|||++.+.
T Consensus 121 ~~~~~~~~g~~VINmSlGg~-----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g---- 191 (546)
T 2qtw_B 121 KSQLVQPVGPLVVLLPLAGG-----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQD---- 191 (546)
T ss_dssp HHHHHSCCSCEEEEECEEEE-----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTS----
T ss_pred HhhhhccCCCeEEEecCCCC-----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCC----
Confidence 74 999999999982 34677888899999999999999999965422 234568999999865321
Q ss_pred ceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcC
Q 004047 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (777)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~G 446 (777)
T Consensus 192 -------------------------------------------------------------------------------- 191 (546)
T 2qtw_B 192 -------------------------------------------------------------------------------- 191 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc----cccCCCCCCC
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA----NFTSRGPNAL 522 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a----~fSS~Gp~~~ 522 (777)
.++ .||++|+.
T Consensus 192 ---------------------------------------------------------------~~a~~s~~fSn~G~~-- 206 (546)
T 2qtw_B 192 ---------------------------------------------------------------QPVTLGTLGTNFGRC-- 206 (546)
T ss_dssp ---------------------------------------------------------------CBCEETTEECCBSTT--
T ss_pred ---------------------------------------------------------------CcccccCCcCCCCCc--
Confidence 122 28999984
Q ss_pred CCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccc
Q 004047 523 DPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWM 602 (777)
Q Consensus 523 ~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~ 602 (777)
|||+|||++|+++++... ..|..++|||||||||||++|||+|++|+++|++||++|++||.+
T Consensus 207 ------vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~ 269 (546)
T 2qtw_B 207 ------VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAK 269 (546)
T ss_dssp ------CCEEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEE
T ss_pred ------ceEEecCccEEeeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccc
Confidence 599999999999987632 578999999999999999999999999999999999999999986
Q ss_pred cCCCCCccc-----CCCC----CCCCCCceeeec--cCccccCC
Q 004047 603 KNNKALPIT-----NADG----SIATPFSFGSGH--FRPTKAAD 635 (777)
Q Consensus 603 ~~~~g~~~~-----~~~~----~~~~~~~~G~G~--vn~~~Al~ 635 (777)
.......+. ...+ .......+|+|+ .++.++..
T Consensus 270 ~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 270 DVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp SCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred cccCCccCccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 542211000 0001 111345678888 77777765
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-46 Score=421.90 Aligned_cols=284 Identities=17% Similarity=0.143 Sum_probs=213.5
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.++- + ..+.++|.++. .
T Consensus 45 ~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~------------------~~~~~d~~~~~----------~ 89 (503)
T 2id4_A 45 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C------------------AEGSWDFNDNT----------N 89 (503)
T ss_dssp HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C------------------GGGCEETTTTB----------S
T ss_pred HHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c------------------ccCcccCCCCC----------C
Confidence 89999999999999999999999999997531 0 01223343321 0
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
+.....|..||||||||||||...++. .+.||||+|+|+.+|+++.. +...++++||+|++
T Consensus 90 ~~~p~~d~~gHGT~vAGiiaa~~~n~~---------~~~GvAp~a~i~~~rv~~~~----------~~~~~~~~ai~~a~ 150 (503)
T 2id4_A 90 LPKPRLSDDYHGTRCAGEIAAKKGNNF---------CGVGVGYNAKISGIRILSGD----------ITTEDEAASLIYGL 150 (503)
T ss_dssp CCCCCSTTTTHHHHHHHHHHCCSSSSS---------SCCCTTTTSEEEEEECTTSC----------CCHHHHHHHTTTTT
T ss_pred CCCCCCCCCChHHHHHHHHHhccCCCC---------CcEEECCCCEEEEEEeeCCC----------CChHHHHHHHHhHh
Confidence 111235788999999999999742221 24699999999999998743 57889999999999
Q ss_pred hCCceEEEeecCCCCCCC---CCccHHHHHHHHHH-----hCCcEEEEecCCCCCCCCCC--c--CCCcceeeeccCccc
Q 004047 294 RDGVHVLSISIGTNQPFA---FNRDGIAIGALNAV-----KHNILVACSAGNSGPAPSSL--S--NLAPWLITVGAGSLD 361 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~---~~~~~~~~a~~~a~-----~~Gi~vV~aAGN~G~~~~~~--~--~~ap~vitVgAs~~~ 361 (777)
+++ +|||||||...... .....+..++.++. .+|++||+||||+|...... . ..++++|+|||++.
T Consensus 151 ~~~-~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~- 228 (503)
T 2id4_A 151 DVN-DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH- 228 (503)
T ss_dssp TTC-SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT-
T ss_pred hcC-CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC-
Confidence 988 99999999843211 12334556666665 47999999999999653322 1 13478999998542
Q ss_pred cccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHH
Q 004047 362 RDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGME 441 (777)
Q Consensus 362 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~ 441 (777)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004047 442 VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 521 (777)
Q Consensus 442 ~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 521 (777)
.+.++.||++||..
T Consensus 229 ------------------------------------------------------------------~~~~a~~S~~g~~~ 242 (503)
T 2id4_A 229 ------------------------------------------------------------------KDLHPPYSEGCSAV 242 (503)
T ss_dssp ------------------------------------------------------------------TSCCCTTCCCCTTE
T ss_pred ------------------------------------------------------------------CCCcCCcCCCCCcc
Confidence 24678999999986
Q ss_pred CCCCCcCCceee----CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHH
Q 004047 522 LDPYILKPDITA----PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALM 597 (777)
Q Consensus 522 ~~d~~~KPDI~A----PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~ 597 (777)
|++| ||..|+++.... +.|..++|||||||||||++|||+|++|+|++++||++|+
T Consensus 243 --------~~~a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~ 302 (503)
T 2id4_A 243 --------MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSI 302 (503)
T ss_dssp --------EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred --------eEeecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHH
Confidence 8887 899999995431 6799999999999999999999999999999999999999
Q ss_pred hcccccCCC-CCcccCCCCCCCCCCceeeeccCccccCCCCce
Q 004047 598 TTAWMKNNK-ALPITNADGSIATPFSFGSGHFRPTKAADPGLV 639 (777)
Q Consensus 598 ~TA~~~~~~-g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv 639 (777)
.||+++... .............+..||+|+||+.+|++...-
T Consensus 303 ~tA~~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~Av~~a~~ 345 (503)
T 2id4_A 303 LSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKT 345 (503)
T ss_dssp HHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHHHTS
T ss_pred hccccCCCCcCCCceecCCCCccCcccCCcEecHHHHHHHHhc
Confidence 999987643 111111111122356799999999999985443
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=389.28 Aligned_cols=231 Identities=26% Similarity=0.325 Sum_probs=195.3
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
..|... +|+||+|||||||||++||+|.+. +...+.|..
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------- 62 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------------AKQIKSYAS------------- 62 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEECSS-------------
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------------cccccCCCC-------------
Confidence 567655 999999999999999999999742 333333332
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...|..||||||||||+|+. .||||+|+|+.+|+++.. + .+..+++++||+|++
T Consensus 63 ---~~~d~~gHGT~vAgii~~~~---------------~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~ai~~~~ 116 (279)
T 3f7m_A 63 ---TARDGHGHGTHCAGTIGSKT---------------WGVAKKVSIFGVKVLDDS--G------SGSLSNIIAGMDFVA 116 (279)
T ss_dssp ---SSSCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred ---CCCCCCCcHHHHHHHHhcCc---------------cccCCCCEEEEEEeeCCC--C------CcCHHHHHHHHHHHH
Confidence 12378999999999999861 499999999999999876 4 578999999999999
Q ss_pred hCC-------ceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC-cCCCcceeeeccCccccccc
Q 004047 294 RDG-------VHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL-SNLAPWLITVGAGSLDRDFV 365 (777)
Q Consensus 294 ~~g-------vdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~-~~~ap~vitVgAs~~~~~~~ 365 (777)
+++ ++|||||||.. ..+.+..++.++.++|++||+||||+|...... +...+++|+|||++.
T Consensus 117 ~~~~~~~~~~~~Vin~S~g~~-----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----- 186 (279)
T 3f7m_A 117 SDRQSRNCPRRTVASMSLGGG-----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS----- 186 (279)
T ss_dssp HHGGGSCCTTEEEEEECCCEE-----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-----
T ss_pred hccccccCCCCeEEEeCCCcC-----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC-----
Confidence 876 99999999982 456788888999999999999999999664333 345689999998542
Q ss_pred cceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhc
Q 004047 366 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRA 445 (777)
Q Consensus 366 ~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~ 445 (777)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCC
Q 004047 446 GGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPY 525 (777)
Q Consensus 446 Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~ 525 (777)
.+.++.||++||..
T Consensus 187 --------------------------------------------------------------~~~~~~~S~~g~~~---- 200 (279)
T 3f7m_A 187 --------------------------------------------------------------NDVRSTFSNYGRVV---- 200 (279)
T ss_dssp --------------------------------------------------------------TSBBCTTCCBSTTC----
T ss_pred --------------------------------------------------------------CCCCCCCCCCCCCC----
Confidence 24788999999965
Q ss_pred CcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCC
Q 004047 526 ILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNN 605 (777)
Q Consensus 526 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~ 605 (777)
||+|||++|+++++. +.|..++|||||||+|||++|||+|++|. ++++||++|++||++...
T Consensus 201 ----di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~ 262 (279)
T 3f7m_A 201 ----DIFAPGTSITSTWIG-------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVL 262 (279)
T ss_dssp ----CEEEECSSEEEECGG-------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCC
T ss_pred ----eEEECCCCeEeecCC-------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccccc
Confidence 999999999999987 78999999999999999999999999999 999999999999997643
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=408.61 Aligned_cols=296 Identities=22% Similarity=0.215 Sum_probs=199.5
Q ss_pred cccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCC
Q 004047 133 QDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 212 (777)
Q Consensus 133 ~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 212 (777)
..+|..+++|+||+|||||||||++||||.++- ..+.++|.++.
T Consensus 60 ~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~--------------------------~~~~~~~~~~~---------- 103 (600)
T 3hjr_A 60 WWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV--------------------------RPGSKNVVTGS---------- 103 (600)
T ss_dssp HHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB--------------------------CSCCBCTTTSS----------
T ss_pred HHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc--------------------------ccCcceeecCC----------
Confidence 379999999999999999999999999997430 11222333221
Q ss_pred CCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHH-HH
Q 004047 213 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAI-DD 291 (777)
Q Consensus 213 ~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai-~~ 291 (777)
.+.....|..||||||||||||.. +..+ +.||||+|+|+.+|++++. + ....++++.|+ ++
T Consensus 104 ~dp~p~~~~~gHGThVAGiIAa~~---------n~~g-~~GVAp~A~l~~~rvl~~~--~------~~~~~~~~~a~~~~ 165 (600)
T 3hjr_A 104 DDPTPTDPDTAHGTSVSGIIAAVD---------NAIG-TKGIAPRAQLQGFNLLDDN--S------QQLQKDWLYALGDS 165 (600)
T ss_dssp SCCCCCSTTCCHHHHHHHHHHCCS---------SSSS-CCCSSTTCEEEEECTTSTT--C------CCCHHHHHHHTTSS
T ss_pred CCCCCCCCCCChHHHHHHHHhEeC---------CCCC-cEEeCCCCEEEEEEeecCC--C------CccHHHHHHHhhhh
Confidence 111234467899999999999862 1111 4699999999999999876 3 35677777766 67
Q ss_pred HHhCCceEEEeecCCCCCCCCCccH-----HHHHHHH--HHhCCcEEEEecCCCCCCCCCCc------------------
Q 004047 292 AIRDGVHVLSISIGTNQPFAFNRDG-----IAIGALN--AVKHNILVACSAGNSGPAPSSLS------------------ 346 (777)
Q Consensus 292 a~~~gvdVIn~SlG~~~~~~~~~~~-----~~~a~~~--a~~~Gi~vV~aAGN~G~~~~~~~------------------ 346 (777)
+..++++|||+|||.........+. +..++.. ...+|+++|+||||.+.......
T Consensus 166 ~~~~~~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~ 245 (600)
T 3hjr_A 166 NASRDNRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSN 245 (600)
T ss_dssp HHHHTCSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTT
T ss_pred hhhcCCCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCccccc
Confidence 7888999999999974322222222 1112221 23679999999999763210000
Q ss_pred ----CCCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCccc
Q 004047 347 ----NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVK 422 (777)
Q Consensus 347 ----~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 422 (777)
...+++|+|||
T Consensus 246 ~d~~~~~~~~IsVgA----------------------------------------------------------------- 260 (600)
T 3hjr_A 246 LDPSNSNFWNLVVSA----------------------------------------------------------------- 260 (600)
T ss_dssp SSGGGGSSSEEEEEE-----------------------------------------------------------------
T ss_pred ccCccccCcceEEee-----------------------------------------------------------------
Confidence 00112222222
Q ss_pred ceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEE
Q 004047 423 GKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTV 502 (777)
Q Consensus 423 g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~ 502 (777)
T Consensus 261 -------------------------------------------------------------------------------- 260 (600)
T 3hjr_A 261 -------------------------------------------------------------------------------- 260 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccCCCCCCCCCCCcCCceeeCCCcE--------EEcccCCCCCC-------------cccCCcccccce
Q 004047 503 LHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI--------LAAWSEASSPS-------------KLAFDKRIVKYT 561 (777)
Q Consensus 503 ~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I--------~sa~~~~~~~~-------------~~~~~~~~~~y~ 561 (777)
....+.++.||++|+.. +++|||.++ .+..++..... ..........|.
T Consensus 261 --~~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (600)
T 3hjr_A 261 --LNADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNG 330 (600)
T ss_dssp --ECTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEE
T ss_pred --ecCCCCEeecccCCcce--------eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCcee
Confidence 12356889999999987 899999762 22222211000 001112235688
Q ss_pred eeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCccc---------------------CCCCCCCCC
Q 004047 562 IFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPIT---------------------NADGSIATP 620 (777)
Q Consensus 562 ~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~---------------------~~~~~~~~~ 620 (777)
.++|||||||||||++|||+|++|+|++++||++|++||++++....|+. ...|.. ..
T Consensus 331 ~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~-~s 409 (600)
T 3hjr_A 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMW-FS 409 (600)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCE-EB
T ss_pred ccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCce-Ec
Confidence 99999999999999999999999999999999999999999987655422 111222 24
Q ss_pred CceeeeccCccccCCCCc
Q 004047 621 FSFGSGHFRPTKAADPGL 638 (777)
Q Consensus 621 ~~~G~G~vn~~~Al~~~l 638 (777)
..||+|+||+.+|++.+.
T Consensus 410 ~~yGfG~vDA~~aV~~A~ 427 (600)
T 3hjr_A 410 PTYGFGLIDVNKALELAA 427 (600)
T ss_dssp TTTBTCBCCHHHHHHHHT
T ss_pred cccCCceecHHHHHHHhh
Confidence 569999999999997443
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-25 Score=253.10 Aligned_cols=97 Identities=27% Similarity=0.394 Sum_probs=75.1
Q ss_pred ceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh---CCceEEEeecCCCCCCCC---CccHHHHHHHH
Q 004047 250 TASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR---DGVHVLSISIGTNQPFAF---NRDGIAIGALN 323 (777)
Q Consensus 250 ~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~---~gvdVIn~SlG~~~~~~~---~~~~~~~a~~~ 323 (777)
.+.||||+|+|+.|++. ...++++++|+||++ ++++|||||||... ..+ ....+..++.+
T Consensus 273 ~~~gvAp~a~i~~~~~~-------------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e-~~~~~~~~~~~~~~~~~ 338 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP-------------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPE-DSWAPASIAAMNRAFLD 338 (552)
T ss_dssp HHHHHCTTSEEEEEECC-------------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEG-GGSCHHHHHHHHHHHHH
T ss_pred hhhccCCCCeEEEEEcC-------------CCCchHHHHHHHHHhcccCCCCEEEecccCCc-ccCCHHHHHHHHHHHHH
Confidence 35799999999999972 245789999999998 79999999999832 111 12356667778
Q ss_pred HHhCCcEEEEecCCCCCCCC------C--CcCCCcceeeeccCcc
Q 004047 324 AVKHNILVACSAGNSGPAPS------S--LSNLAPWLITVGAGSL 360 (777)
Q Consensus 324 a~~~Gi~vV~aAGN~G~~~~------~--~~~~ap~vitVgAs~~ 360 (777)
|..+||+||+||||+|.... . .+...|+|++||+++.
T Consensus 339 a~~~Gi~vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 339 AAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp HHHTTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred HHhCCeEEEEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 88999999999999996532 2 2234599999999764
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-21 Score=210.10 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=77.7
Q ss_pred eeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh-CCceEEEeecCCCCCC---CCCccHHHHHHHHHHhC
Q 004047 252 SGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR-DGVHVLSISIGTNQPF---AFNRDGIAIGALNAVKH 327 (777)
Q Consensus 252 ~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~-~gvdVIn~SlG~~~~~---~~~~~~~~~a~~~a~~~ 327 (777)
..+||+++++.|++.+.. + +..++++++|+||++ ++++|||||||..... ....+.+..++.+|..+
T Consensus 90 g~~aP~a~~~~~~~~~~~--~-------~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~ 160 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQS--A-------SGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQ 160 (372)
T ss_dssp HHTTSCEEEEEEEEECTT--S-------STTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred hhcCCCCcEEEEEeCCCC--C-------cccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhC
Confidence 357899999999998654 2 567889999999998 8999999999983210 11234566777788899
Q ss_pred CcEEEEecCCCCCCCC-------------CCcCCCcceeeeccCccc
Q 004047 328 NILVACSAGNSGPAPS-------------SLSNLAPWLITVGAGSLD 361 (777)
Q Consensus 328 Gi~vV~aAGN~G~~~~-------------~~~~~ap~vitVgAs~~~ 361 (777)
||+||+||||+|...+ ..+...|+|++||+++..
T Consensus 161 Gitvv~AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 161 GQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp TCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CcEEEEEECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 9999999999996532 122345999999998653
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=122.45 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=51.7
Q ss_pred HHHHHHHHHH--hCCceEEEeecCCCCCC--CCCccHHHHHHHHHHhCCcEEEEecCCCCCCCC----------CCcCCC
Q 004047 284 DMLAAIDDAI--RDGVHVLSISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPS----------SLSNLA 349 (777)
Q Consensus 284 ~i~~ai~~a~--~~gvdVIn~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~----------~~~~~a 349 (777)
.++..+++.. .+-++|||+|||..... ..+.+.+..++.++..+||.|++|+||+|.... ..+...
T Consensus 284 ~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASGD~G~~~~~~~~~~~~~~~~Pas~ 363 (544)
T 3edy_A 284 PFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASS 363 (544)
T ss_dssp HHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCSSTTBCEEETTEEECCCEETTTC
T ss_pred cHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecCCCCccccCCCCCccccCCCcCCC
Confidence 3455444443 35689999999983211 112234555667788999999999999996532 223346
Q ss_pred cceeeeccCcc
Q 004047 350 PWLITVGAGSL 360 (777)
Q Consensus 350 p~vitVgAs~~ 360 (777)
|||++||+++.
T Consensus 364 P~VtaVGgT~l 374 (544)
T 3edy_A 364 PYVTTVGGTSF 374 (544)
T ss_dssp TTSEEEEEEEE
T ss_pred CcEEEEeeeec
Confidence 99999999764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-09 Score=95.52 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=64.0
Q ss_pred CCcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEeeeeEeEEEEEcCHHHHHHhhcCCCeEEEEeCC
Q 004047 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSH 101 (777)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~~ 101 (777)
..+.|||+|++... ......|.+|+.+++.+ .....+++|+|++.|+||+++++++++++|+++|+|.+||+|+
T Consensus 36 ip~~YIV~lk~~~~-----~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~ 109 (114)
T 2w2n_P 36 LPGTYVVVLKEETH-----LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS 109 (114)
T ss_dssp EEEEEEEEECTTCC-----HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEE
T ss_pred CCCcEEEEECCCCC-----HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCc
Confidence 45799999998762 24455888999887754 2234689999999999999999999999999999999999998
Q ss_pred CCccc
Q 004047 102 PEKYS 106 (777)
Q Consensus 102 ~~~~~ 106 (777)
.++
T Consensus 110 --~v~ 112 (114)
T 2w2n_P 110 --SVF 112 (114)
T ss_dssp --EEE
T ss_pred --eEe
Confidence 654
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-08 Score=96.28 Aligned_cols=95 Identities=22% Similarity=0.150 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCc-------ccceEEEEecCC-cchhhhhHHHhhcCceEEEEecCCCCCCcc---c-cCCccccEEEE
Q 004047 407 ETNQCLPGSLTPEK-------VKGKIVLCMRGS-GFKLSKGMEVKRAGGVGLILGNSPANGNEY---S-YDAHYLPATAV 474 (777)
Q Consensus 407 ~~~~c~~~~~~~~~-------~~g~ivl~~~g~-~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~---~-~~~~~~p~~~i 474 (777)
....|.+....... .++||+|++||. |+|.+|..+++++||.++|+||+...+... . .....||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 45789987653322 579999999999 999999999999999999999985332221 1 22357999999
Q ss_pred eHHHHHHHHHHHhcCCCceEEEEeceE
Q 004047 475 LYDDAIKIHEYIKSTNNPTAIIKQART 501 (777)
Q Consensus 475 ~~~~g~~l~~~~~~~~~~~~~i~~~~~ 501 (777)
+..+|+.|++++..+..++++|.....
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~~ 188 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGKK 188 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCCc
Confidence 999999999999999999888887653
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-08 Score=83.55 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=56.4
Q ss_pred cCCcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEeeeeEeEEEEEcCHHHHHHhhcCCCeEEEEeC
Q 004047 21 KQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPS 100 (777)
Q Consensus 21 ~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~ 100 (777)
...++|||.||+.... .. .+.+++++ ...++.++|++ |+||+++++++++++|+++|+|.+||+|
T Consensus 6 ~i~~~YIV~~k~~~~~----~~---~~~~~~~~-------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D 70 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKS----CA---KKEDVISE-------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEED 70 (80)
T ss_dssp --CCEEEEEECTTCCS----HH---HHHHHHHT-------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEEC
T ss_pred cCCCCEEEEECCCCCh----HH---HHHHHHHH-------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeC
Confidence 3568999999988732 11 12233322 12479999998 9999999999999999999999999999
Q ss_pred CCCccccccCC
Q 004047 101 HPEKYSLQTTR 111 (777)
Q Consensus 101 ~~~~~~~~~~~ 111 (777)
+ .++++++.
T Consensus 71 ~--~v~~~tt~ 79 (80)
T 3cnq_P 71 K--LYRALSAT 79 (80)
T ss_dssp C--EEEECCC-
T ss_pred c--EEEEeeec
Confidence 9 88887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.53 E-value=8.7e-08 Score=86.52 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=58.9
Q ss_pred CCcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEeeeeEeEEEEEcCHHHHHHhhcCCCeEEEEeCC
Q 004047 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSH 101 (777)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~~ 101 (777)
..++|||+||+... ......|.+++....... ....++.++|++.|+||++++++++++.|+++|+|.+|++++
T Consensus 46 Ip~~YIV~~K~~~~-----~~~~~~~~~~l~~~~~~r-~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~ 119 (124)
T 2qtw_A 46 LPGTYVVVLKEETH-----LSQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS 119 (124)
T ss_dssp EEEEEEEEECTTCC-----HHHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEE
T ss_pred CCCCEEEEECCCCC-----HHHHHHHHHHHHHHHhhc-ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCc
Confidence 35799999998873 233445555665543211 023579999998999999999999999999999999999998
Q ss_pred CCccc
Q 004047 102 PEKYS 106 (777)
Q Consensus 102 ~~~~~ 106 (777)
.++
T Consensus 120 --~v~ 122 (124)
T 2qtw_A 120 --SVF 122 (124)
T ss_dssp --EEE
T ss_pred --eEe
Confidence 654
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-07 Score=76.13 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=56.6
Q ss_pred cEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEee-eeEeEEEEEcCHHHHHHhhcC--CCeEEEEeC
Q 004047 24 QVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYK-HSINGFSAVLTPDEAARLSEL--EEVVSVYPS 100 (777)
Q Consensus 24 ~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~ng~s~~~~~~~~~~L~~~--~~V~~V~~~ 100 (777)
+.|||.||+.. +......|.+++.+.. .++.+.|+ ..|+||+++++++.+++|+++ |.|.+||+|
T Consensus 3 ~sYIV~lk~~~-----~~~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D 70 (76)
T 1v5i_B 3 GKFIVIFKNDV-----SEDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (76)
T ss_dssp EEEEEEECTTC-----CHHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ceEEEEECCCC-----CHHHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence 68999999887 2345556777776653 36889994 789999999999999999999 889999999
Q ss_pred CCCccc
Q 004047 101 HPEKYS 106 (777)
Q Consensus 101 ~~~~~~ 106 (777)
+ .++
T Consensus 71 ~--~v~ 74 (76)
T 1v5i_B 71 H--VAH 74 (76)
T ss_dssp C--EEE
T ss_pred c--EEe
Confidence 8 654
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00043 Score=54.72 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=36.6
Q ss_pred ccceEEEeeeeEeEEEEEcCHHHHHHhhcCCCeEEEEeCC
Q 004047 62 RASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSH 101 (777)
Q Consensus 62 ~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~~ 101 (777)
..++.++|.. +++++++||++.++.|+++|+|++|++|.
T Consensus 22 gG~i~~~~~~-I~a~~~~lp~~~~~~L~~~p~V~yVE~D~ 60 (65)
T 2z30_B 22 GGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDH 60 (65)
T ss_dssp TCEEEEECSS-SSEEEEEECGGGHHHHHTSTTEEEEEECC
T ss_pred CCEEEEEecC-CcEEEEEeCHHHHHHHhcCCCceEEecCc
Confidence 4689999977 99999999999999999999999999998
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0045 Score=68.26 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=59.7
Q ss_pred CCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc--cc-cCCccccEEEEeHHHHHHHHHHHh
Q 004047 415 SLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--YS-YDAHYLPATAVLYDDAIKIHEYIK 487 (777)
Q Consensus 415 ~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~--~~-~~~~~~p~~~i~~~~g~~l~~~~~ 487 (777)
++...+++|||||++||.|.|..|..++.++||.|+|+|++...... +. .....+|...++.++++.|.+++.
T Consensus 107 D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 107 DVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred hcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 34445899999999999999999999999999999999998632211 11 134678999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.024 Score=62.76 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=61.6
Q ss_pred CCcccceEEEEecCCcc---------hhhh----hHHHhhcCceEEEEecCCCCCCc--------cccCCccccEEEEeH
Q 004047 418 PEKVKGKIVLCMRGSGF---------KLSK----GMEVKRAGGVGLILGNSPANGNE--------YSYDAHYLPATAVLY 476 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~---------~~~~----~~~~~~~Ga~gvi~~n~~~~~~~--------~~~~~~~~p~~~i~~ 476 (777)
+.+++|||||++|+.|. +..| ..++.++||+|+|++|+...... .......||++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 56899999999998874 3344 45799999999999997432210 111245799999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEec
Q 004047 477 DDAIKIHEYIKSTNNPTAIIKQA 499 (777)
Q Consensus 477 ~~g~~l~~~~~~~~~~~~~i~~~ 499 (777)
++++.|.+.+..+....+++...
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEe
Confidence 99999999998877666665544
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.014 Score=67.19 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=55.3
Q ss_pred CcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCc------------------cc----------------c
Q 004047 419 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE------------------YS----------------Y 464 (777)
Q Consensus 419 ~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~------------------~~----------------~ 464 (777)
.+++|||||+++|.|.+..|..++.++||.|+|+|++...... .. .
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 5899999999999999999999999999999999997542100 00 0
Q ss_pred CCccccEEEEeHHHHHHHHHHHh
Q 004047 465 DAHYLPATAVLYDDAIKIHEYIK 487 (777)
Q Consensus 465 ~~~~~p~~~i~~~~g~~l~~~~~ 487 (777)
....||+..|+.++++.|++.+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 12368999999999999987543
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=95.41 E-value=0.017 Score=67.34 Aligned_cols=71 Identities=28% Similarity=0.410 Sum_probs=56.2
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCC----C--------------C---cc-----ccC------
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN----G--------------N---EY-----SYD------ 465 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~----~--------------~---~~-----~~~------ 465 (777)
..+++|||||+++|.|.+.+|..+|+++||.|+|+|+++.+ + . .+ .++
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 45799999999999999999999999999999999986210 0 0 00 011
Q ss_pred ----------------CccccEEEEeHHHHHHHHHHHhc
Q 004047 466 ----------------AHYLPATAVLYDDAIKIHEYIKS 488 (777)
Q Consensus 466 ----------------~~~~p~~~i~~~~g~~l~~~~~~ 488 (777)
...||+..|+..+++.|+..+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 24789999999999999987653
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.22 Score=44.35 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=43.7
Q ss_pred CceEEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEEC
Q 004047 686 NGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLG 742 (777)
Q Consensus 686 ~~~~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 742 (777)
..+.+.+++|+|.|..+..|+..... -++++|..-.+ ++|+++.++|+|.+.
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~ 91 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQ 91 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCS
T ss_pred CCeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcC
Confidence 35688899999999999999887643 36678999988 579999999999984
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.39 E-value=2.6 Score=38.32 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=59.0
Q ss_pred ceEEEEEEEEecCCCCeeEEEEeeCC----CccEEEEecceEEEccCCcEEEEEEEEEECccccc-ccCCCceEEEEEEE
Q 004047 687 GTVIVKRTVTNVGGSKSVYFFSAKPP----MGVSVKANPSILFFDHIGQKKSFTITVRLGSETTR-QGLTKQYVFGWYRW 761 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~ty~~~~~~~----~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~G~~~~ 761 (777)
...+-+++++|.|..+.+|++..... ..--++++|..-++ .+|++..++|++.+.+.... ......-.+--|++
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 45677889999999999999985421 11236678999888 57999999999997532000 00111222445555
Q ss_pred E-CCccEEEeeEEEEe
Q 004047 762 T-DGLHLVRSPMAVSF 776 (777)
Q Consensus 762 ~-~~~~~v~~P~~~~~ 776 (777)
. +++.+..+|+...|
T Consensus 122 ~Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 122 HLDRGKDYFLTISGNY 137 (140)
T ss_dssp EETTSCEEEEEEEEEE
T ss_pred EeecCCcEEEEEeccc
Confidence 4 55677788887665
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.54 E-value=0.2 Score=61.51 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=22.7
Q ss_pred cCCCCceEEEEeecCCCCCCCCCC
Q 004047 139 ARYGQDVIVGLVDNGVWPESKSFS 162 (777)
Q Consensus 139 g~~G~GV~VgVIDtGid~~Hp~f~ 162 (777)
.+.|+||+|||+|||||+.+|.|+
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 789999999999999999999984
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=88.18 E-value=0.32 Score=53.60 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.4
Q ss_pred cCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccC
Q 004047 505 TQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSE 544 (777)
Q Consensus 505 ~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~ 544 (777)
....+.++.||++||.. ||+|||++|+++++.
T Consensus 180 ~~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 180 VDSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp ECTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred ECCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 34467899999999865 999999999999875
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=87.96 E-value=6.4 Score=34.39 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=44.2
Q ss_pred eEEEEEEEEecCCCCeeEEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECc
Q 004047 688 TVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 743 (777)
Q Consensus 688 ~~t~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~ 743 (777)
.-.+++.+.|....+.+|++++...+++.+. .+..+++ ++|+..++.|.+..++
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 3568899999999999999999987776653 3566877 5789999999998864
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.55 E-value=1.7 Score=37.56 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=42.6
Q ss_pred ceEEEEEEEEecCCCCeeEEEEeeC-CCccEEEEecceEEEccCCcEEEEEEEEEEC
Q 004047 687 GTVIVKRTVTNVGGSKSVYFFSAKP-PMGVSVKANPSILFFDHIGQKKSFTITVRLG 742 (777)
Q Consensus 687 ~~~t~~~tvtn~~~~~~ty~~~~~~-~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 742 (777)
...+.+++++|.|+.+..|++.... +.+..++++|..-.+ ++|++++++|++.+.
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSI 81 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCC
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECC
Confidence 4577889999999999999984311 113347778999888 569999999999984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 777 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 3e-40 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-12 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 9e-06 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 5e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 9e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 0.003 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-10 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 0.002 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-09 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 9e-09 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 6e-07 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 9e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-04 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 0.003 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 9e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 151 bits (382), Expect = 3e-40
Identities = 81/516 (15%), Positives = 153/516 (29%), Gaps = 101/516 (19%)
Query: 126 WNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNS 185
W +G +LS ++ + + ++D+G +
Sbjct: 6 WGQTFVGATVLSDSQ-AGNRTICIIDSGYDRSHNDLNA---------------------- 42
Query: 186 SLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 245
+ G + T + P + + HGTH A T+A
Sbjct: 43 ----NNVTGTNN------------SGTGNWYQPGNNNAHGTHVAGTIAAIA--------- 77
Query: 246 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 305
G P I+ + + D A +V+++S+G
Sbjct: 78 -NNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGA-----NVVTMSLG 131
Query: 306 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 365
+ R+ + + +L+ +AGN+G + S +++V A + D
Sbjct: 132 GSGSTTTERNALN----THYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHA 187
Query: 366 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKI 425
+EI G ++ V E +
Sbjct: 188 AFSQYTDQVEISGPGEA----------------ILSTVTVGEGRLADITIGGQSYFSNGV 231
Query: 426 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEY 485
V R + S A G + NG +S + I + E
Sbjct: 232 VPHNRLTPSGTSYAPAPINASATGAL-AECTVNGTSFSCGN---------MANKICLVER 281
Query: 486 IKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYIL--KPDITAPGLNILAAWS 543
+ + + I + + S P +P+++ DIT P +++ A
Sbjct: 282 VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATG 341
Query: 544 EA----SSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 599
A S ++ Y ++GTSM+ PHV+ A L+ + HP+ S++ +R+AL T
Sbjct: 342 LALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNAT 401
Query: 600 AWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 635
A + G G A
Sbjct: 402 A-----------DDLSVAGRDNQTGYGMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 67.8 bits (164), Expect = 3e-12
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 529 PDITAPGLNILAAWSEASSPSKLAFDKRIV-----KYTIFSGTSMSCPHVAAAAALLKAI 583
+ APG+ IL+ S ++ + Y + GTSM+ PHV A+L
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 584 HPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKA 633
P+ IR L TA+ N G G + A
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAA 436
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 46.6 bits (109), Expect = 9e-06
Identities = 54/364 (14%), Positives = 101/364 (27%), Gaps = 72/364 (19%)
Query: 15 LASSAQKQKQVYIVHFGGSDNGEKALHEI-----QETHHSYLLSVKDNEEEARASHLYSY 69
LAS + + Q Y + FG +GE +I + ++ + + +
Sbjct: 6 LASLPEIKSQGYHILFGELRDGEYTEGKILVGYNDRSEVDKIVKAVNGKVVLELPQIKVV 65
Query: 70 KHSINGFSAVLTPDEAARLSELEEVVSVYPS-------------HPEKYSLQTTR--SWE 114
+NG + D + L+ + V PS +P+ Y ++ S
Sbjct: 66 SIKLNGMTVKQAYD-KIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTA 124
Query: 115 FVGLDEVAKQNWNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSW 173
+E++ + W +G G ++IV +VD GV
Sbjct: 125 RDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDL------------ 172
Query: 174 KGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVA 233
+G G GTH A T+A
Sbjct: 173 EGQVIAGYRPAFD-----------------------EELPAGTDSSYGGSAGTHVAGTIA 209
Query: 234 GRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293
+ G AP A++ A + + A I A
Sbjct: 210 AK----------KDGKGIVGVAPGAKIMPIVIFD--DPALVGGNGYVGDDYVAAGIIWAT 257
Query: 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLI 353
G V++ + + ++ ++V + N+ + P +I
Sbjct: 258 DHGAKVMNH---SWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVI 314
Query: 354 TVGA 357
V A
Sbjct: 315 QVAA 318
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 62.2 bits (149), Expect = 5e-11
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 528 KPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW 587
+I+APG ++ + W Y SGTSM+ PHV+ AA + A +P
Sbjct: 224 DIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 588 SSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFR 629
S+ +RS L A + K +I ++ G G R
Sbjct: 271 SNTQLRSNLQERAKSVDIK----GGYGAAIGDDYASGFGFAR 308
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 61.1 bits (147), Expect = 9e-11
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 35/148 (23%)
Query: 488 STNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASS 547
ST V + A+F+S GP + D+ APG++I +
Sbjct: 163 STVGYPGKYPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGNK- 213
Query: 548 PSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKA 607
Y ++GTSM+ PHVA AAAL+ + HP+W++ +RS+L T
Sbjct: 214 ------------YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTT------- 254
Query: 608 LPITNADGSIATPFSFGSGHFRPTKAAD 635
+ F +G G AA
Sbjct: 255 -------TKLGDSFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 38.0 bits (87), Expect = 0.003
Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 60/232 (25%)
Query: 126 WNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 184
+ + L Y G +V V ++D+G+ G G +
Sbjct: 6 YGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG--------------GASMV 51
Query: 185 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFG 244
S + +D + HGTH A TVA
Sbjct: 52 PS---------------------------ETNPFQDNNSHGTHVAGTVAALNNS------ 78
Query: 245 GFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304
G AP A L K A + + ++ I+ AI + + V+++S+
Sbjct: 79 ----IGVLGVAPSASLYAVKVLGAD--------GSGQYSWIINGIEWAIANNMDVINMSL 126
Query: 305 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVG 356
G A + + + V + + P +I VG
Sbjct: 127 GGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVG 178
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 60.0 bits (144), Expect = 2e-10
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 35/146 (23%)
Query: 488 STNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASS 547
+T A V A+F+S G + ++ APG + + + +
Sbjct: 162 NTIGYPAKYDSVIAVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPTNT- 212
Query: 548 PSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKA 607
Y +GTSM+ PHVA AAAL+ + HP+ S++ +R+ L +TA
Sbjct: 213 ------------YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA------- 253
Query: 608 LPITNADGSIATPFSFGSGHFRPTKA 633
+ + F +G G A
Sbjct: 254 -------TYLGSSFYYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 38.8 bits (89), Expect = 0.002
Identities = 50/325 (15%), Positives = 101/325 (31%), Gaps = 74/325 (22%)
Query: 126 WNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 184
+ + D + + G +V V ++D G+
Sbjct: 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDL----------------------- 42
Query: 185 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFG 244
++G + + D +GHGTH +
Sbjct: 43 ------NVVGGA-------------SFVAGEAYNTDGNGHGTH----------VAGTVAA 73
Query: 245 GFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304
G AP L K + + + +++ I+ A +G+ V+++
Sbjct: 74 LDNTTGVLGVAPSVSLYAVKVLN--------SSGSGSYSGIVSGIEWATTNGMDVINM-- 123
Query: 305 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPW----LITVGAGSL 360
+ A + NA ++V +AGNSG + S+ + P +I VGA
Sbjct: 124 --SLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS 181
Query: 361 DRDFVGPVVLGTGMEII--GKTVTPYNLKKMHPLVYAADVVVPGVHQNETN-QCLPGSLT 417
+ + +G +E++ G V + + + P V +L+
Sbjct: 182 NSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 418 PEKVKGKIVL--CMRGSGFKLSKGM 440
+V+ ++ GS F KG+
Sbjct: 242 ASQVRNRLSSTATYLGSSFYYGKGL 266
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 57.2 bits (137), Expect = 1e-09
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 501 TVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKY 560
V T A+F+ G DI APG+N+ + + ++ Y
Sbjct: 170 AVGATDQNNNRASFSQYGAG--------LDIVAPGVNVQSTYPGST-------------Y 208
Query: 561 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
+GTSM+ PHVA AAAL+K +P WS+ IR+ L TA
Sbjct: 209 ASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.6 bits (132), Expect = 9e-09
Identities = 13/76 (17%), Positives = 24/76 (31%)
Query: 560 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 619
+GTS S P A AL + + + ++ ++ T+ + A
Sbjct: 253 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 312
Query: 620 PFSFGSGHFRPTKAAD 635
S+G G
Sbjct: 313 SHSYGYGLLDAGAMVA 328
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 54.1 bits (128), Expect = 2e-08
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 523 DPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA 582
+KPD+ APG IL+A S + S + KY GTSM+ P VA A L+
Sbjct: 212 KDGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLRE 270
Query: 583 IHPD-----WSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 635
+ +++AL+ A G + G G K+ +
Sbjct: 271 HFVKNRGITPKPSLLKAALIAGA-----------ADIGLGYPNGNQGWGRVTLDKSLN 317
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 49.3 bits (116), Expect = 6e-07
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 559 KYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
SGTSM+ PHVA AA L + +++A R + TA
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTA 256
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 9e-06
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 560 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 619
GTS + P A LL +P+ + ++ + +A A
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 620 P-FSFGSGHFRPTKA 633
+G G K
Sbjct: 317 YSHRYGFGKIDAHKL 331
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 44/240 (18%), Positives = 70/240 (29%), Gaps = 32/240 (13%)
Query: 363 DFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVK 422
D G V+ G N H V + + G ++
Sbjct: 48 DLDGKVIKGYDFVDNDYDPMDLNNHGTH-------VAGIAAAETNNATGIAGMAPNTRIL 100
Query: 423 GKIVLCMRGSGF--KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAI 480
L GSG ++ + G +I + + + + + A
Sbjct: 101 AVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYAWNKGSVVVA 160
Query: 481 KIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILA 540
ST A + V +A+F++ G D+ AP
Sbjct: 161 AAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTW--------VDVVAP------ 206
Query: 541 AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
+ +Y SGTSM+ PHVA AALL ++ IR A+ TA
Sbjct: 207 -------GVDIVSTITGNRYAYMSGTSMASPHVAGLAALLA--SQGRNNIEIRQAIEQTA 257
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 37.6 bits (86), Expect = 0.003
Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 62/236 (26%)
Query: 123 KQNWNHFNMGQDLL-SKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGV 181
+ N D + + ++D GV
Sbjct: 10 GYQYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG------------------ 51
Query: 182 AFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNAS 241
++ + ++D P D++ HGTH A A
Sbjct: 52 ----------------------KVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNNA-- 87
Query: 242 AFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 301
+G AP R+ +A + +D+ AI A G V++
Sbjct: 88 -------TGIAGMAPNTRILAVRALD--------RNGSGTLSDIADAIIYAADSGAEVIN 132
Query: 302 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
+S+G + + + A +V +AGN+G + + +I VGA
Sbjct: 133 LSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGA 184
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 39.7 bits (91), Expect = 9e-04
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 560 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 600
Y SGTSM+ PHVA A LL + + IR+A+ TA
Sbjct: 218 YASLSGTSMATPHVAGVAGLLASQGRSA--SNIRAAIENTA 256
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 777 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.66 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.52 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.78 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.41 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 96.03 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.6e-52 Score=490.01 Aligned_cols=378 Identities=21% Similarity=0.188 Sum_probs=261.5
Q ss_pred CcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEeeeeEeEEEEEcCHHH----HH--HhhcCCCeEE
Q 004047 23 KQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDE----AA--RLSELEEVVS 96 (777)
Q Consensus 23 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~----~~--~L~~~~~V~~ 96 (777)
..+|||.||+.. ...++++++- .++++.+.. ++.+.++++... .+ ++..+|+|++
T Consensus 31 ~~~~iV~~k~~~-----------~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 91 (671)
T d1r6va_ 31 EGKILVGYNDRS-----------EVDKIVKAVN-------GKVVLELPQ-IKVVSIKLNGMTVKQAYDKIKALALKGIRY 91 (671)
T ss_dssp TTEEEEEESSHH-----------HHHHHHHHHT-------CEEEEEEGG-GTEEEEECSSCCHHHHHHHHTTSCCSSEEE
T ss_pred CCeEEEEECCcc-----------CHHHHHHhcC-------CEEEEEecc-cceEEEEcCchhHHHHHHHHHHhcCCCceE
Confidence 568999999654 1233333332 245555554 566777765432 22 2345899999
Q ss_pred EEeCCCCccccccC----Ccccccccc-------------hhhhcccCccc-cccccccccCCCCceEEEEeecCCCCCC
Q 004047 97 VYPSHPEKYSLQTT----RSWEFVGLD-------------EVAKQNWNHFN-MGQDLLSKARYGQDVIVGLVDNGVWPES 158 (777)
Q Consensus 97 V~~~~~~~~~~~~~----~s~~~~gl~-------------~~~~~~~~~~~-~~~~~~~~g~~G~GV~VgVIDtGid~~H 158 (777)
|+|+. .+++... ......... .....+|.+.. ...+.|....+|+||+|||||||||++|
T Consensus 92 vep~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~H 169 (671)
T d1r6va_ 92 VEPSY--KRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTH 169 (671)
T ss_dssp EECCB--CCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTS
T ss_pred ECcce--eEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCC
Confidence 99987 5443211 000000000 00000111100 0113444467999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCCCC
Q 004047 159 KSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVP 238 (777)
Q Consensus 159 p~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~ 238 (777)
|+|.++ ++..+++..+... ....++.|..||||||||||||+..
T Consensus 170 pdl~~~---------------------------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~VAGiiaa~~~- 213 (671)
T d1r6va_ 170 PDLEGQ---------------------------VIAGYRPAFDEEL--------PAGTDSSYGGSAGTHVAGTIAAKKD- 213 (671)
T ss_dssp GGGTTT---------------------------BCCEEEGGGTEEE--------CTTCBCCTTCSHHHHHHHHHHCCCS-
T ss_pred hhhcCC---------------------------cccCccccccCCC--------CCCCcCcccCCCCccccceeeeecc-
Confidence 999753 1222222211111 1123456788999999999999731
Q ss_pred CCCccCCcCCCceeeecCCCeEEEEEeecCC----CCCCccCCCCCCHHHHHHHHHHHHhCCceEEEeecCCCCCCCCCc
Q 004047 239 NASAFGGFAEGTASGGAPLARLAIYKACWAT----PKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNR 314 (777)
Q Consensus 239 ~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~----~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~ 314 (777)
. ..+.||||+|+|+++|++++. ..| ....+.+++||+||+++|++|||||||+. ...
T Consensus 214 --------~-~g~~GvAp~a~l~~~rv~~~~~~~~~~g------~~~~~~i~~ai~~a~~~g~~Vin~S~g~~----~~~ 274 (671)
T d1r6va_ 214 --------G-KGIVGVAPGAKIMPIVIFDDPALVGGNG------YVGDDYVAAGIIWATDHGAKVMNHSWGGW----GYS 274 (671)
T ss_dssp --------S-SSCCCSCTTSEEEEEESBCCHHHHCTTS------BCCHHHHHHHHHHHHHTTCSEEEECEEBS----CCC
T ss_pred --------c-cceeeecCcceEEEEEecccccccCCCC------cccHHHHHHHHHHHHhCCCcEEecccccc----cCC
Confidence 1 235799999999999999752 113 46788899999999999999999999983 234
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCcCCCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeE
Q 004047 315 DGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLV 393 (777)
Q Consensus 315 ~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~-~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v 393 (777)
..+..++..+.++|+++|+||||++.+.. ..+...|++|+|||++...
T Consensus 275 ~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------- 323 (671)
T d1r6va_ 275 YTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------------- 323 (671)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET-------------------------------
T ss_pred hHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC-------------------------------
Confidence 56777888999999999999999986542 3444569999999864311
Q ss_pred EecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEE
Q 004047 394 YAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATA 473 (777)
Q Consensus 394 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~ 473 (777)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCc---
Q 004047 474 VLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSK--- 550 (777)
Q Consensus 474 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~--- 550 (777)
....++.||+|||.. ||+|||++|+|+++.......
T Consensus 324 ---------------------------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~ 362 (671)
T d1r6va_ 324 ---------------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGH 362 (671)
T ss_dssp ---------------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCC
T ss_pred ---------------------------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccc
Confidence 012678999999975 999999999999875332111
Q ss_pred --ccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeecc
Q 004047 551 --LAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHF 628 (777)
Q Consensus 551 --~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~v 628 (777)
.......+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++... ..+..||||+|
T Consensus 363 ~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~v 431 (671)
T d1r6va_ 363 NENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLV 431 (671)
T ss_dssp CTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBC
T ss_pred cccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcccChh
Confidence 11122347899999999999999999999999999999999999999999987643 24678999999
Q ss_pred CccccCCCCce
Q 004047 629 RPTKAADPGLV 639 (777)
Q Consensus 629 n~~~Al~~~lv 639 (777)
|+.+||+..+.
T Consensus 432 na~~Av~~~~~ 442 (671)
T d1r6va_ 432 KLDAALQGPLP 442 (671)
T ss_dssp CHHHHHHCCCC
T ss_pred CHHHHhhCcCC
Confidence 99999986543
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=7.7e-50 Score=447.30 Aligned_cols=376 Identities=22% Similarity=0.265 Sum_probs=243.9
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|. .+|+||+|||||||||++||+|+++ ++..+++... .
T Consensus 15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~-----------~ 54 (435)
T d1v6ca_ 15 VLSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT-----------G 54 (435)
T ss_dssp GSCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS-----------C
T ss_pred hhhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCC-----------C
Confidence 4554 5899999999999999999999743 2222222221 1
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecC--CCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAP--LARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP--~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 291 (777)
+...+.|++||||||||||||+.. +..+.|||| +++|+.+|++... . .+...++++||++
T Consensus 55 ~~~~~~d~~gHGThvAgiiag~~~----------~~g~~GvAp~~~~~l~~~~~~~~~--~------~~~~~~~~~a~~~ 116 (435)
T d1v6ca_ 55 NWYQPGNNNAHGTHVAGTIAAIAN----------NEGVVGVMPNQNANIHIVKVFNEA--G------WGYSSSLVAAIDT 116 (435)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCCCS----------SSBCCCSSCSSCSEEEEEECEETT--E------ECCSSCHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHhccCC----------CCceEEEecccCceeeeeeccccc--c------cchhhhhhhHHHH
Confidence 234577899999999999999731 123579999 8999999999876 2 3567779999999
Q ss_pred HHh-CCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEe
Q 004047 292 AIR-DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVL 370 (777)
Q Consensus 292 a~~-~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~ 370 (777)
+++ .+++|||+|||... ....+..++..+.++|+++|+||||+|+...+.+...+++|+||+++.+.........
T Consensus 117 a~~~~~~~vin~S~g~~~----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~ 192 (435)
T d1v6ca_ 117 CVNSGGANVVTMSLGGSG----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY 192 (435)
T ss_dssp HHHTTCCSEEEECCCBSC----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCC
T ss_pred HhhcccceEEecccCCCC----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCC
Confidence 986 59999999999832 3355666778899999999999999998888777788999999999877654443333
Q ss_pred CCCcEE--EeeeeccCCCC---cceeeEEecccccCC-c---CcCCCCC------------------C--CCCCCCCCcc
Q 004047 371 GTGMEI--IGKTVTPYNLK---KMHPLVYAADVVVPG-V---HQNETNQ------------------C--LPGSLTPEKV 421 (777)
Q Consensus 371 ~~~~~~--~g~~~~~~~~~---~~~~~v~~~~~~~~~-~---~~~~~~~------------------c--~~~~~~~~~~ 421 (777)
+....+ .|..+...... ............... . ....... | ....+...++
T Consensus 193 g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (435)
T d1v6ca_ 193 TDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNM 272 (435)
T ss_dssp CSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCC
T ss_pred CCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecccc
Confidence 332221 11111100000 000000000000000 0 0000000 0 0111223345
Q ss_pred cceEEEEecCCc-----chhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEE
Q 004047 422 KGKIVLCMRGSG-----FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAII 496 (777)
Q Consensus 422 ~g~ivl~~~g~~-----~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 496 (777)
.+++.++.+... ............+..+++.+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 311 (435)
T d1v6ca_ 273 ANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN----------------------------------------- 311 (435)
T ss_dssp TTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECC-----------------------------------------
T ss_pred ccccceeeccCCccccceeeeeceeecccCCcceEEecc-----------------------------------------
Confidence 566666665322 2334444555556655555543
Q ss_pred EeceEEeecCCCCccccccCCCCCCCC--CCCcCCceeeCCCcEEEcccCCC----CCCcccCCcccccceeeccccchh
Q 004047 497 KQARTVLHTQPAPFMANFTSRGPNALD--PYILKPDITAPGLNILAAWSEAS----SPSKLAFDKRIVKYTIFSGTSMSC 570 (777)
Q Consensus 497 ~~~~~~~~~~~~~~~a~fSS~Gp~~~~--d~~~KPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~sGTSmAa 570 (777)
+.+|.... ....||||.+||..|.++..... .............|..||||||||
T Consensus 312 -------------------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAa 372 (435)
T d1v6ca_ 312 -------------------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMAT 372 (435)
T ss_dssp -------------------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHH
T ss_pred -------------------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHH
Confidence 22222211 25678999999998876532100 000000112236799999999999
Q ss_pred hHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCCCCceeeCchhhHHHh
Q 004047 571 PHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLY 650 (777)
Q Consensus 571 P~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~ 650 (777)
|||||++|||+|+||+|++++||++||+||+++.. .+++++||+|+||+.+|++ ||..
T Consensus 373 P~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~-----------~~~~~~~G~G~vn~~~A~~-----------~l~~ 430 (435)
T d1v6ca_ 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLSV-----------AGRDNQTGYGMINAVAAKA-----------YLDE 430 (435)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS-----------SSCBTTTBTCBCCHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC-----------CCCCCCcccceecHHHHHH-----------HHHh
Confidence 99999999999999999999999999999997743 3467899999999999954 7776
Q ss_pred hhc
Q 004047 651 LCS 653 (777)
Q Consensus 651 ~~~ 653 (777)
.|.
T Consensus 431 ~~~ 433 (435)
T d1v6ca_ 431 SCT 433 (435)
T ss_dssp CTT
T ss_pred cCC
Confidence 663
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=7.2e-49 Score=412.70 Aligned_cols=258 Identities=26% Similarity=0.331 Sum_probs=210.1
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|+.+++|+||+|||||||||++||+|.++ ++..++|...
T Consensus 22 ~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------------~~~~~~~~~~------------ 62 (280)
T d1dbia_ 22 YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT------------
T ss_pred HHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------------eeecccccCC------------
Confidence 8999999999999999999999999999742 3344444332
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..+|||||||+|+|.. .....+.||||+|+|+.+|+++.. + .+...++++||+|++
T Consensus 63 -~~~~~d~~~HGT~vag~i~~~~---------~~~~~~~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 124 (280)
T d1dbia_ 63 -DYDPMDLNNHGTHVAGIAAAET---------NNATGIAGMAPNTRILAVRALDRN--G------SGTLSDIADAIIYAA 124 (280)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCCC---------SSSSSCCCSSSSCEEEEEECCCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CCccccccccccceeEeeeccc---------cCCCceeEEeccCEEEEEEEeCCC--C------CcCHHHHHHHHHHHH
Confidence 1346788999999999999873 223446799999999999999876 4 578999999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCC
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
++|++|||||||... ..+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 125 ~~g~~iin~S~g~~~----~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~------------- 187 (280)
T d1dbia_ 125 DSGAEVINLSLGCDC----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------- 187 (280)
T ss_dssp HTTCSEEEECCSSCC----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------
T ss_pred HcCCcEeeccccccc----cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC-------------
Confidence 999999999999832 334455666889999999999999999766666666789999997532
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceee
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 533 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~A 533 (777)
.++++.||++||.. |++|
T Consensus 188 ------------------------------------------------------~~~~a~~S~~g~~~--------d~~a 205 (280)
T d1dbia_ 188 ------------------------------------------------------YDRLASFSNYGTWV--------DVVA 205 (280)
T ss_dssp ------------------------------------------------------TSCBCTTBCCSTTC--------CEEE
T ss_pred ------------------------------------------------------CCCcCCcCCCCCcc--------cccC
Confidence 34788999999976 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004047 534 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 613 (777)
Q Consensus 534 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 613 (777)
||.+|++.... ..|..++|||||||+|||++|||+|. .+++.+||++|++||+++..
T Consensus 206 pg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-------- 262 (280)
T d1dbia_ 206 PGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-------- 262 (280)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT--------
T ss_pred CccceeccccC-------------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC--------
Confidence 99999999876 78999999999999999999999995 56899999999999987653
Q ss_pred CCCCCCCCceeeeccCccccCC
Q 004047 614 DGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 614 ~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
++..||+|+||+++||+
T Consensus 263 -----~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 263 -----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----BTTTBSSEECCHHHHHT
T ss_pred -----CCCcCCCCeEcHHHHcC
Confidence 34579999999999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1.2e-48 Score=410.26 Aligned_cols=256 Identities=29% Similarity=0.439 Sum_probs=212.2
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|+ +...++|..+
T Consensus 15 ~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-----------------------------~~~~~~~~~~------------ 53 (274)
T d1r0re_ 15 KVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAG------------ 53 (274)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTT------------
T ss_pred HHHHcCCCCCCeEEEEECCCCCCCChhhc-----------------------------ccCCccccCC------------
Confidence 78999999999999999999999999994 2233444332
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..||||||||||++... ...+.|+||+|+|+.+|+++.. + .+..++++++++++.
T Consensus 54 -~~~~~d~~gHGT~vAgii~~~~~----------~~~~~gvap~a~i~~~~~~~~~--~------~~~~~~i~~ai~~a~ 114 (274)
T d1r0re_ 54 -EAYNTDGNGHGTHVAGTVAALDN----------TTGVLGVAPSVSLYAVKVLNSS--G------SGSYSGIVSGIEWAT 114 (274)
T ss_dssp -CCTTCCSSSHHHHHHHHHHCCSS----------SSBCCCSSTTSEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred -CCCCCCccccccccccccccccc----------cccccccCCCcEEEEEEEeCCC--C------CcCHHHHHHHHHHHH
Confidence 12456788999999999998731 1224699999999999999876 4 467899999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC----CcCCCcceeeeccCccccccccceE
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS----LSNLAPWLITVGAGSLDRDFVGPVV 369 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~----~~~~ap~vitVgAs~~~~~~~~~~~ 369 (777)
+++++|||+|||... ..........++.++++++|+||||+|..... .+...+++|+|||++.
T Consensus 115 ~~~~~i~n~S~~~~~----~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------- 181 (274)
T d1r0re_ 115 TNGMDVINMSLGGAS----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------- 181 (274)
T ss_dssp HTTCSEEEECEEBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------
T ss_pred hcCCceecccccccc----chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC---------
Confidence 999999999999832 23445556678899999999999999865332 2234578999997542
Q ss_pred eCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceE
Q 004047 370 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 449 (777)
Q Consensus 370 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g 449 (777)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCC
Q 004047 450 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 529 (777)
Q Consensus 450 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KP 529 (777)
.+.++.||++||. |
T Consensus 182 ----------------------------------------------------------~~~~~~~s~~g~~--------~ 195 (274)
T d1r0re_ 182 ----------------------------------------------------------NSNRASFSSVGAE--------L 195 (274)
T ss_dssp ----------------------------------------------------------TSCBCTTCCCSTT--------E
T ss_pred ----------------------------------------------------------CCCcccccCCCCC--------E
Confidence 2477899999985 4
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCc
Q 004047 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 609 (777)
Q Consensus 530 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~ 609 (777)
||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 196 di~APG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~----- 257 (274)
T d1r0re_ 196 EVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----- 257 (274)
T ss_dssp EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-----
T ss_pred EEEecCCCcccccCC-------------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-----
Confidence 999999999999887 78999999999999999999999999999999999999999998764
Q ss_pred ccCCCCCCCCCCceeeeccCccccCC
Q 004047 610 ITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 610 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
++..||+|+||+.+|+|
T Consensus 258 ---------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 ---------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---------CHHHHTTCBCCHHHHTC
T ss_pred ---------CCCceEcCeecHHHhcC
Confidence 35679999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.7e-48 Score=408.75 Aligned_cols=257 Identities=26% Similarity=0.376 Sum_probs=217.2
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
++|+.+ +|+||+|+|||||||++||+|.+ +++..++|.++
T Consensus 22 ~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~---------------------------~~~~~~~~~~~------------ 61 (279)
T d1thma_ 22 QAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDN------------ 61 (279)
T ss_dssp HHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTT------------
T ss_pred HHHhcc-CCCCcEEEEEcCCCCCCChhhcC---------------------------Ceecccccccc------------
Confidence 889887 99999999999999999999964 24444555432
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..+|||||||+|++... ....+.|+||+|+|+.+|++... + .+...+++++|++++
T Consensus 62 -~~~~~d~~~HGT~vag~i~~~~~---------~~~~~~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~ai~~~~ 123 (279)
T d1thma_ 62 -DSTPQNGNGHGTHCAGIAAAVTN---------NSTGIAGTAPKASILAVRVLDNS--G------SGTWTAVANGITYAA 123 (279)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCCCS---------SSSSCCCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CcccccccccccccceeeeeccC---------CCccccccCCcceEEEEEEEecC--C------CCcHHHHHHHHHHHh
Confidence 13567889999999999999742 23345799999999999999876 4 478899999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCC
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
+.+++|||+|||.. ........+...+.++|+++|+|+||+|..........+++|+|||++.
T Consensus 124 ~~~~~i~n~S~G~~----~~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~------------- 186 (279)
T d1thma_ 124 DQGAKVISLSLGGT----VGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------- 186 (279)
T ss_dssp HTTCSEEEECCCBS----SCCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------
T ss_pred hcCCceeccccCcc----ccchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC-------------
Confidence 99999999999983 2344556677889999999999999999877666667799999998542
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceee
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 533 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~A 533 (777)
.+.++.||++|++. ||.|
T Consensus 187 ------------------------------------------------------~~~~~~~S~~G~~~--------di~A 204 (279)
T d1thma_ 187 ------------------------------------------------------NDNKSSFSTYGSWV--------DVAA 204 (279)
T ss_dssp ------------------------------------------------------TSCBCTTCCCCTTC--------CEEE
T ss_pred ------------------------------------------------------CCCCccccCCCceE--------EEee
Confidence 24788999999976 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004047 534 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 613 (777)
Q Consensus 534 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 613 (777)
||.+|+++.+. +.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++..
T Consensus 205 pg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g-------- 261 (279)
T d1thma_ 205 PGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG-------- 261 (279)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT--------
T ss_pred eeeccccccCc-------------ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC--------
Confidence 99999999987 7899999999999999999999999665 789999999999987653
Q ss_pred CCCCCCCCceeeeccCccccCC
Q 004047 614 DGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 614 ~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
.+..||+|+||+.+||+
T Consensus 262 -----~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 262 -----TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -----BTTTBSSEECCHHHHHH
T ss_pred -----CCCcceeeeEcHHHhhC
Confidence 35679999999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=4.4e-48 Score=407.46 Aligned_cols=258 Identities=31% Similarity=0.435 Sum_probs=213.0
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|.++++|+||+|||||||||++||+|+.. ..+++...
T Consensus 15 ~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-----------------------------~~~~~~~~------------ 53 (281)
T d1to2e_ 15 ALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-----------------------------GGASMVPS------------ 53 (281)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-----------------------------EEEECCTT------------
T ss_pred HHHHCCCCCCCeEEEEECCCCCCCChhhhhc-----------------------------CCccccCC------------
Confidence 8999999999999999999999999999521 22222221
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
+.....+..+|||||||||+|... .....||||+|+|+.+|++..+ + ....+++++||+|++
T Consensus 54 ~~~~~~~~~~HGT~vAgiiag~~~----------~~~~~giAp~a~l~~~kv~~~~--~------~~~~~~~~~ai~~a~ 115 (281)
T d1to2e_ 54 ETNPFQDNNSHGTHVAGTVAALNN----------SIGVLGVAPSASLYAVKVLGAD--G------SGQYSWIINGIEWAI 115 (281)
T ss_dssp CCCTTCCSSSHHHHHHHHHHCCSS----------SSSBCCSSTTSEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred CCCCCcCcCCCCceeecccccCCC----------CCCcceeecccEEEEEEEeCCC--C------CcCHHHHHHHHHHHH
Confidence 111233467999999999998731 1224699999999999999876 4 467889999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC----CcCCCcceeeeccCccccccccceE
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS----LSNLAPWLITVGAGSLDRDFVGPVV 369 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~----~~~~ap~vitVgAs~~~~~~~~~~~ 369 (777)
+.+++|||+|||.. .....+..+++.+.++|+++|+||||+|..... .+...+++|+||+++.
T Consensus 116 ~~~~~v~n~S~g~~----~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------- 182 (281)
T d1to2e_ 116 ANNMDVINMSLGGP----SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------- 182 (281)
T ss_dssp HTTCSEEEECEEBS----CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------
T ss_pred hccccccccccCCC----cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC---------
Confidence 99999999999983 344667777888999999999999999865332 2234578999997542
Q ss_pred eCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceE
Q 004047 370 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 449 (777)
Q Consensus 370 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g 449 (777)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCC
Q 004047 450 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 529 (777)
Q Consensus 450 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KP 529 (777)
.+.++.||++||..
T Consensus 183 ----------------------------------------------------------~~~~~~~S~~G~~~-------- 196 (281)
T d1to2e_ 183 ----------------------------------------------------------SNQRASFSSVGPEL-------- 196 (281)
T ss_dssp ----------------------------------------------------------TSCBCTTCCCSTTC--------
T ss_pred ----------------------------------------------------------CCCCCcccCCCCCc--------
Confidence 24778999999976
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCc
Q 004047 530 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 609 (777)
Q Consensus 530 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~ 609 (777)
|+.|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.|++++||++|++||+++.
T Consensus 197 d~~apG~~i~s~~~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~----- 258 (281)
T d1to2e_ 197 DVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----- 258 (281)
T ss_dssp CEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-----
T ss_pred cccCCCCCceeecCC-------------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-----
Confidence 999999999999887 78999999999999999999999999999999999999999999764
Q ss_pred ccCCCCCCCCCCceeeeccCccccCCC
Q 004047 610 ITNADGSIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 610 ~~~~~~~~~~~~~~G~G~vn~~~Al~~ 636 (777)
++..||+|+||+.+|++.
T Consensus 259 ---------~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 259 ---------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---------CHHHHTTCBCCHHHHTSS
T ss_pred ---------CCCCcccCcccHHHHHhh
Confidence 345799999999999983
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=9.1e-48 Score=402.32 Aligned_cols=255 Identities=30% Similarity=0.425 Sum_probs=214.3
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+||||||||+ +||+|+.. ..++|...
T Consensus 15 ~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-----------------------------~~~~~~~~------------ 52 (269)
T d1gcia_ 15 AAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-----------------------------GGASFVPG------------ 52 (269)
T ss_dssp HHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-----------------------------EEEECSTT------------
T ss_pred HHHhCCCCCCCeEEEEECCCCC-CCcccCcc-----------------------------ccccccCC------------
Confidence 8999999999999999999998 89999521 22233321
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
...+.|..+|||||||||++... .....|+||+|+|+.+|++... + ......+.++++++.
T Consensus 53 -~~~~~d~~~HGT~vAgii~~~~~----------~~~~~giap~a~i~~~~v~~~~--~------~~~~~~~~~ai~~~~ 113 (269)
T d1gcia_ 53 -EPSTQDGNGHGTHVAGTIAALNN----------SIGVLGVAPSAELYAVKVLGAS--G------SGSVSSIAQGLEWAG 113 (269)
T ss_dssp -CCSCSCSSSHHHHHHHHHHCCCS----------SSBCCCSSTTCEEEEEECBCTT--S------CBCHHHHHHHHHHHH
T ss_pred -CCCccccchhhheecccccccCC----------CccccccCCceEEEEEEEecCC--C------CccHHHHHHHHHHHH
Confidence 12456788999999999998631 2234699999999999999876 4 468889999999999
Q ss_pred hCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCCCcceeeeccCccccccccceEeCCC
Q 004047 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~ 373 (777)
..++++||+|||... .......+...+.++|+++|+||||+|......+...|++|+||+++.
T Consensus 114 ~~~~~~in~s~g~~~----~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 176 (269)
T d1gcia_ 114 NNGMHVANLSLGSPS----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------- 176 (269)
T ss_dssp HTTCSEEEECCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------
T ss_pred hcccccccccccccc----ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc-------------
Confidence 999999999999832 234455566788999999999999999776666666799999998542
Q ss_pred cEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEEEEe
Q 004047 374 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 453 (777)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~ 453 (777)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T d1gcia_ 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCceee
Q 004047 454 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 533 (777)
Q Consensus 454 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPDI~A 533 (777)
.+.++.||++||.. ||+|
T Consensus 177 ------------------------------------------------------~~~~~~~S~~G~~~--------di~A 194 (269)
T d1gcia_ 177 ------------------------------------------------------NNNRASFSQYGAGL--------DIVA 194 (269)
T ss_dssp ------------------------------------------------------TSCBCTTCCCSTTE--------EEEE
T ss_pred ------------------------------------------------------CCCcccccCCCCCc--------eEEE
Confidence 24778999999975 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004047 534 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 613 (777)
Q Consensus 534 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 613 (777)
||.++.++.+. ..|..++|||||||+|||++|||+|++|++++++||++|++||+++.
T Consensus 195 pg~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g--------- 252 (269)
T d1gcia_ 195 PGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------- 252 (269)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------
T ss_pred eeecceeccCC-------------CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------
Confidence 99999999887 78999999999999999999999999999999999999999998764
Q ss_pred CCCCCCCCceeeeccCccccCC
Q 004047 614 DGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 614 ~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
++..||+|+||+++|++
T Consensus 253 -----~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 253 -----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----CHHHHTTCBCCHHHHTC
T ss_pred -----CCCCcccCeEcHHHhcC
Confidence 34579999999999986
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=1.8e-43 Score=377.15 Aligned_cols=286 Identities=26% Similarity=0.315 Sum_probs=215.3
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.++ +...++|..... .
T Consensus 17 ~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~---------~ 60 (309)
T d2ixta1 17 DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT---------P 60 (309)
T ss_dssp TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS---------C
T ss_pred hhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCC---------C
Confidence 8999999999999999999999999999742 334444443211 0
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
......|..||||||||||+|.. ......+.||||+|+|+.+|++... + .+..++++.++++++
T Consensus 61 ~~~~~~d~~gHGT~VAgiiaa~~--------~~~~~~~~GvAp~a~l~~~~~~~~~--~------~~~~~~~~~~~~~a~ 124 (309)
T d2ixta1 61 INNSCTDRNGHGTHVAGTALADG--------GSDQAGIYGVAPDADLWAYKVLLDS--G------SGYSDDIAAAIRHAA 124 (309)
T ss_dssp EETCCCCSSSHHHHHHHHHHCBC--------CTTSCSCBCSCTTSEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred CCCCccccccccccccccccccc--------cccchhhhhhhhhccceeeeeecCC--C------Ccccccccccccccc
Confidence 11245678899999999999874 2233345799999999999998876 4 468889999999988
Q ss_pred hC-----CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCC--CcceeeeccCcccccccc
Q 004047 294 RD-----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL--APWLITVGAGSLDRDFVG 366 (777)
Q Consensus 294 ~~-----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~--ap~vitVgAs~~~~~~~~ 366 (777)
+. ...|+|+|++.. ........+...+.++|+++|+||||++........+ .+++++|++.+.......
T Consensus 125 ~~~~~~~~~~v~~~s~~~~----~~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~ 200 (309)
T d2ixta1 125 DQATATGTKTIISMSLGSS----ANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGT 200 (309)
T ss_dssp HHHHHHTCCEEEEECCCBS----SCCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTE
T ss_pred ccccccccccccccccccc----ccccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccc
Confidence 75 447899999982 2334555666788999999999999999776554443 477888876432110000
Q ss_pred ceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcC
Q 004047 367 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 446 (777)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~G 446 (777)
.
T Consensus 201 ~------------------------------------------------------------------------------- 201 (309)
T d2ixta1 201 Y------------------------------------------------------------------------------- 201 (309)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004047 447 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 526 (777)
Q Consensus 447 a~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~ 526 (777)
..........++++|+.. ...
T Consensus 202 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~--~~~ 222 (309)
T d2ixta1 202 ---------------------------------------------------------RVADYSSRGYISTAGDYV--IQE 222 (309)
T ss_dssp ---------------------------------------------------------EECTTSCCCCTTTTTSSS--CCT
T ss_pred ---------------------------------------------------------cccccccccccccccccc--cCC
Confidence 000112444667777765 366
Q ss_pred cCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhcccccCCC
Q 004047 527 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNK 606 (777)
Q Consensus 527 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~ 606 (777)
.||||+|||.+|+++.+. ..|..++|||||||+|||++|||+|++|+|++.+||++|++||++++..
T Consensus 223 ~~vdi~apG~~~~s~~~~-------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~ 289 (309)
T d2ixta1 223 GDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIK 289 (309)
T ss_dssp TCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred CcceeecCCCceeeecCC-------------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC
Confidence 899999999999999887 7899999999999999999999999999999999999999999988654
Q ss_pred CCcccCCCCCCCCCCceeeeccCc
Q 004047 607 ALPITNADGSIATPFSFGSGHFRP 630 (777)
Q Consensus 607 g~~~~~~~~~~~~~~~~G~G~vn~ 630 (777)
+.. .....+++.+|+|++|+
T Consensus 290 ~~~----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 290 GGY----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp BST----TCCSSSBTTTBTCBCCC
T ss_pred CCc----CCccCCCcccCCCEecC
Confidence 321 12345677889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=1.3e-42 Score=364.93 Aligned_cols=257 Identities=27% Similarity=0.297 Sum_probs=199.8
Q ss_pred ccccchhhhcccCccccccccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeee
Q 004047 115 FVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIG 194 (777)
Q Consensus 115 ~~gl~~~~~~~~~~~~~~~~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig 194 (777)
.|||.+++.+.... ....| ...+|+||+|||||||||++||+|.++ +..
T Consensus 7 ~wgl~~i~~~~~~~---~~~~~-~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~ 55 (279)
T d2pwaa1 7 PWGLARISSTSPGT---STYYY-DESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQM 55 (279)
T ss_dssp CHHHHHHTCSSTTC---CCEEC-CTTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEE
T ss_pred CCchhhhCCCCcCC---Cccee-cCCCCCCeEEEEECcCCCCCChhhcCC---------------------------cee
Confidence 35777663332210 11334 467999999999999999999999743 111
Q ss_pred eeecccccccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCc
Q 004047 195 ARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274 (777)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~ 274 (777)
.+.+ ...+.|..||||||||||+|+. .|+||+|+|+.+|++... .
T Consensus 56 ~~~~----------------~~~~~d~~gHGT~VAgiia~~~---------------~G~a~~a~l~~~~v~~~~--~-- 100 (279)
T d2pwaa1 56 VKTY----------------YYSSRDGNGHGTHCAGTVGSRT---------------YGVAKKTQLFGVKVLDDN--G-- 100 (279)
T ss_dssp EEES----------------SSCSSCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEEEECSCTT--S--
T ss_pred ccCC----------------CCCcccccCccccccccccccc---------------cccCCCccccceeeecCC--c--
Confidence 1111 1135578899999999999862 499999999999998876 3
Q ss_pred cCCCCCCHHHHHHHHHHHHhC-------CceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCC-Cc
Q 004047 275 AAGNTCFEADMLAAIDDAIRD-------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS-LS 346 (777)
Q Consensus 275 ~~~~~~~~~~i~~ai~~a~~~-------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~-~~ 346 (777)
....+.+..+++++... +++|+|+|||. ...+.+..++.++.++|+++|+||||++..... .+
T Consensus 101 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~-----~~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p 171 (279)
T d2pwaa1 101 ----SGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGG-----GYSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSP 171 (279)
T ss_dssp ----CCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCE-----ECCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEET
T ss_pred ----ccccccccchhheecccccccccccccceeccCCC-----ccccccchhhhhhhhCCcEEEEeCccccccccccCC
Confidence 46788899999998764 45699999998 234667777788999999999999999865333 23
Q ss_pred CCCcceeeeccCccccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEE
Q 004047 347 NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIV 426 (777)
Q Consensus 347 ~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~iv 426 (777)
...|++|+|||++.
T Consensus 172 ~~~~~vi~VgA~~~------------------------------------------------------------------ 185 (279)
T d2pwaa1 172 ASEPSVCTVGASDR------------------------------------------------------------------ 185 (279)
T ss_dssp TTCTTSEEEEEECT------------------------------------------------------------------
T ss_pred ccCCceEEeeeEee------------------------------------------------------------------
Confidence 34588999997542
Q ss_pred EEecCCcchhhhhHHHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecC
Q 004047 427 LCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQ 506 (777)
Q Consensus 427 l~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 506 (777)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCCCCCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCC
Q 004047 507 PAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD 586 (777)
Q Consensus 507 ~~~~~a~fSS~Gp~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ 586 (777)
.+.++.||++||.. ||+|||.+|+++++. +.|..++|||||||+|||++|||+|++|.
T Consensus 186 -~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~ 243 (279)
T d2pwaa1 186 -YDRRSSFSNYGSVL--------DIFGPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTLGKT 243 (279)
T ss_dssp -TSBBCTTCCBSTTC--------CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHTTSC
T ss_pred -cCCCccccCCCCcc--------ccccccccccccccC-------------CcccCCCcchhHHHHHHHHHHHHHHhCCC
Confidence 35788999999976 999999999999987 78999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCceeeeccCc
Q 004047 587 WSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRP 630 (777)
Q Consensus 587 ~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 630 (777)
++++++|. |++||++.. ....|+|++|+
T Consensus 244 ~~~~~~~~-ll~ta~~~~---------------~~~~g~g~~n~ 271 (279)
T d2pwaa1 244 TAASACRY-IADTANKGD---------------LSNIPFGTVNL 271 (279)
T ss_dssp CTTTHHHH-HHHHSEESC---------------CBSCCTTSCCE
T ss_pred ChHHHHHH-HHHhCcCCC---------------CCCCCCCChhh
Confidence 99887775 677887542 34579999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1e-40 Score=357.19 Aligned_cols=298 Identities=27% Similarity=0.281 Sum_probs=218.1
Q ss_pred ccccc-cCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCC
Q 004047 134 DLLSK-ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 212 (777)
Q Consensus 134 ~~~~~-g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 212 (777)
.+|.. |++|+||+|||||||||++||+|.... .| ..++...+.+..
T Consensus 12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~---------------~~~~~~~~~~~~------------ 58 (318)
T d1wmda2 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AF---------------RGKITALYALGR------------ 58 (318)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TT---------------TTCEEEEEETTT------------
T ss_pred hHHHccCccccCeEEEEEcCCcCCCCcccccCc------cc---------------CCcEEeecCCCC------------
Confidence 67775 999999999999999999999996421 11 122333333222
Q ss_pred CCCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH
Q 004047 213 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA 292 (777)
Q Consensus 213 ~~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a 292 (777)
...+.|..||||||||||+|+.. ...||||+|+|+.+|++...... ......+..+++++
T Consensus 59 --~~~~~d~~gHGT~vAgiiag~~~------------~~~GvAp~a~l~~~~v~~~~~~~------~~~~~~~~~~~~~~ 118 (318)
T d1wmda2 59 --TNNANDTNGHGTHVAGSVLGNGS------------TNKGMAPQANLVFQSIMDSGGGL------GGLPSNLQTLFSQA 118 (318)
T ss_dssp --TTCCCCSSSHHHHHHHHHHCCSS------------SSCCSSTTSEEEEEECCCTTSSC------TTSCSSHHHHHHHH
T ss_pred --CCCCCCCCCCCccceeecccccc------------ccchhhhcccceeeeeeeecccc------cccchhhHHHHHHH
Confidence 13466789999999999998731 13699999999999999875211 23455678899999
Q ss_pred HhCCceEEEeecCCCCCCCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCcCC--CcceeeeccCccccccccceEe
Q 004047 293 IRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL--APWLITVGAGSLDRDFVGPVVL 370 (777)
Q Consensus 293 ~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~--ap~vitVgAs~~~~~~~~~~~~ 370 (777)
...+++|+|+|||.. ...........+...+.++++++|+++||.|......... .++++++.+..........
T Consensus 119 ~~~~~~i~~~S~g~~-~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--- 194 (318)
T d1wmda2 119 YSAGARIHTNSWGAA-VNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS--- 194 (318)
T ss_dssp HHTTCSEEEECCCBC-CTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGCG---
T ss_pred HhcCCceeecccccc-cccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccccc---
Confidence 999999999999983 3334445555666677899999999999999776655443 4666666654321100000
Q ss_pred CCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHHHhhcCceEE
Q 004047 371 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 450 (777)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gv 450 (777)
T Consensus 195 -------------------------------------------------------------------------------- 194 (318)
T d1wmda2 195 -------------------------------------------------------------------------------- 194 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCcCCc
Q 004047 451 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 530 (777)
Q Consensus 451 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~d~~~KPD 530 (777)
.......+..||++||.. +...|||
T Consensus 195 -----------------------------------------------------~~~~~~~~~~~s~~G~~~--~~~~~~~ 219 (318)
T d1wmda2 195 -----------------------------------------------------YADNINHVAQFSSRGPTK--DGRIKPD 219 (318)
T ss_dssp -----------------------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCC
T ss_pred -----------------------------------------------------ccccccccccccccCCCc--CCCcccc
Confidence 001134677899999987 4779999
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHC-----CCCCHHHHHHHHHhcccccCC
Q 004047 531 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-----PDWSSAAIRSALMTTAWMKNN 605 (777)
Q Consensus 531 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P~~s~~~ik~~L~~TA~~~~~ 605 (777)
+.|||.+|+++.+....... ........|..++|||||||+|||++|||+|++ +.+++.+||++|++||++...
T Consensus 220 ~~a~G~~i~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~ 298 (318)
T d1wmda2 220 VMAPGTFILSARSSLAPDSS-FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL 298 (318)
T ss_dssp EEEECSSEEEECCTTCCGGG-SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS
T ss_pred eeecCceEEeccccccccCc-cccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC
Confidence 99999999998876432211 111223568889999999999999999999975 468899999999999997653
Q ss_pred CCCcccCCCCCCCCCCceeeeccCccccCC
Q 004047 606 KALPITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 606 ~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
..++..||||+||+.+||+
T Consensus 299 -----------~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 299 -----------GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp -----------CSSCTTTTTCBCCHHHHHT
T ss_pred -----------CCCCCCeeeceecHHHHhC
Confidence 3467789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-39 Score=347.97 Aligned_cols=283 Identities=14% Similarity=0.132 Sum_probs=190.9
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|.++-. .+..| .+.+. .. ...
T Consensus 28 ~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~------------~~~~~-------------~~~~~-~~------~~~ 75 (334)
T d1p8ja2 28 EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------PGASF-------------DVNDQ-DP------DPQ 75 (334)
T ss_dssp HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------GGGCE-------------ETTTT-BS------CCC
T ss_pred HHHhcCCCCCCeEEEEEccCCCCCChhHhhccc------------cCCCc-------------cccCC-CC------ccc
Confidence 899999999999999999999999999975310 00111 01110 00 001
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
......|..+|||||||||+|...++. ...|+||+++++.+|++... ....+.++.+++
T Consensus 76 ~~~~~~~~~gHGT~vAgiia~~~~n~~---------~~~g~a~~a~~~~~~~~~~~------------~~~~~~~~~~~~ 134 (334)
T d1p8ja2 76 PRYTQMNDNRHGTRCAGEVAAVANNGV---------CGVGVAYNARIGGVRMLDGE------------VTDAVEARSLGL 134 (334)
T ss_dssp CCCCTTCTTCHHHHHHHHHHCCSSSSS---------SCCCTTTTSEEEEEECSSSC------------CCHHHHHHHHTS
T ss_pred cccccccCccchhhhhhhhhhcccccc---------ccccccccccccchhhcccc------------ccchHHHHHHHh
Confidence 123455789999999999999853222 23599999999999987543 345566777776
Q ss_pred h-CCceEEEeecCCCCCCCCCcc--------HHHHHHHHHHhCCcEEEEecCCCCCCCCCCcC----CCcceeeeccCcc
Q 004047 294 R-DGVHVLSISIGTNQPFAFNRD--------GIAIGALNAVKHNILVACSAGNSGPAPSSLSN----LAPWLITVGAGSL 360 (777)
Q Consensus 294 ~-~gvdVIn~SlG~~~~~~~~~~--------~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~----~ap~vitVgAs~~ 360 (777)
+ .+++++|+|||.......... ....+...+..+|+++|+||||++........ ..+.+++|++++.
T Consensus 135 ~~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (334)
T d1p8ja2 135 NPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ 214 (334)
T ss_dssp CTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT
T ss_pred hhcCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc
Confidence 5 689999999998432222211 12233445677899999999998754332221 1233444443221
Q ss_pred ccccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhH
Q 004047 361 DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 440 (777)
Q Consensus 361 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~ 440 (777)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCC
Q 004047 441 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPN 520 (777)
Q Consensus 441 ~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 520 (777)
.+..+.||++|+.
T Consensus 215 -------------------------------------------------------------------~g~~~~~s~~~~~ 227 (334)
T d1p8ja2 215 -------------------------------------------------------------------FGNVPWYSEACSS 227 (334)
T ss_dssp -------------------------------------------------------------------TSCCCTTCCBCTT
T ss_pred -------------------------------------------------------------------CCceeeecccCCc
Confidence 2455667777665
Q ss_pred CCCCCCcCCceeeCCC-----cEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHH
Q 004047 521 ALDPYILKPDITAPGL-----NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSA 595 (777)
Q Consensus 521 ~~~d~~~KPDI~APG~-----~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~ 595 (777)
.. .+..+||. .+.+.... ..|..++|||||||+|||++|||+|++|+|++.|||++
T Consensus 228 ~~------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~ 288 (334)
T d1p8ja2 228 TL------ATTYSSGNQNEKQIVTTDLRQ-------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 288 (334)
T ss_dssp CC------EEEECCCSTTSCCEEEEETTT-------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred cc------cccccccccccccccccccCC-------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 41 13344442 23333322 67889999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCcccCCCCCCCCCCceeeeccCccccCC
Q 004047 596 LMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 635 (777)
Q Consensus 596 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 635 (777)
|++||++....+..+.........+..||+|+||+++||+
T Consensus 289 L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 289 VVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp HHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHH
T ss_pred HHHhCcccCCCCccccccCCCcccCCCCcceEeCHHHHHH
Confidence 9999998765443333222233345678999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8e-39 Score=345.60 Aligned_cols=285 Identities=16% Similarity=0.118 Sum_probs=201.9
Q ss_pred ccccccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCC
Q 004047 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (777)
Q Consensus 134 ~~~~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 213 (777)
.+|..+++|+||+|||||||||++||+|+++-. ..+.++|.+.. .
T Consensus 37 ~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------------------------~~~~~~~~~~~----------~ 81 (339)
T d2id4a2 37 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------------------------AEGSWDFNDNT----------N 81 (339)
T ss_dssp HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------------------------GGGCEETTTTB----------S
T ss_pred HHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------------------------cccccccccCC----------C
Confidence 899999999999999999999999999975310 00122333211 1
Q ss_pred CCCCCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004047 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (777)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 293 (777)
......++.+|||||||+|+|.... ...+.||||+|+|+.++++... ....++..++.+++
T Consensus 82 ~~~~~~~~~~HGT~vag~iaa~~~~---------~~~~~Gvap~a~~~~~~~~~~~----------~~~~~~~~~~~~~~ 142 (339)
T d2id4a2 82 LPKPRLSDDYHGTRCAGEIAAKKGN---------NFCGVGVGYNAKISGIRILSGD----------ITTEDEAASLIYGL 142 (339)
T ss_dssp CCCCCSTTTTHHHHHHHHHHCCSSS---------SSSCCCTTTTSEEEEEECTTSC----------CCHHHHHHHTTTTT
T ss_pred ccCCCcccccccceeeecccccccc---------cccccccccccccceEEEeecc----------ccchHHHHHHHHHH
Confidence 1224456789999999999987422 2234699999999999997643 67788888888876
Q ss_pred hCCceEEEeecCCCCCCCCC---ccH-----HHHHHHHHHhCCcEEEEecCCCCCCCCCCcCC----CcceeeeccCccc
Q 004047 294 RDGVHVLSISIGTNQPFAFN---RDG-----IAIGALNAVKHNILVACSAGNSGPAPSSLSNL----APWLITVGAGSLD 361 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~~~~---~~~-----~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~~~----ap~vitVgAs~~~ 361 (777)
+. .+|+|+|+|........ ... ...+...+..+|+++|+||||++........+ .+.+++|++++
T Consensus 143 ~~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~-- 219 (339)
T d2id4a2 143 DV-NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID-- 219 (339)
T ss_dssp TT-CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC--
T ss_pred hh-CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc--
Confidence 65 59999999974321111 111 22334456678999999999987543322211 13333333321
Q ss_pred cccccceEeCCCcEEEeeeeccCCCCcceeeEEecccccCCcCcCCCCCCCCCCCCCCcccceEEEEecCCcchhhhhHH
Q 004047 362 RDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGME 441 (777)
Q Consensus 362 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~ 441 (777)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004047 442 VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 521 (777)
Q Consensus 442 ~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 521 (777)
..+..+.||++|+.
T Consensus 220 -----------------------------------------------------------------~~g~~~~~s~~~~~- 233 (339)
T d2id4a2 220 -----------------------------------------------------------------HKDLHPPYSEGCSA- 233 (339)
T ss_dssp -----------------------------------------------------------------TTSCCCTTCCCCTT-
T ss_pred -----------------------------------------------------------------ccccccccccccCc-
Confidence 13466777888775
Q ss_pred CCCCCcCCceeeCCCcEEEcccCCCCCCcccCCcccccceeeccccchhhHHHHHHHHHHHHCCCCCHHHHHHHHHhccc
Q 004047 522 LDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 601 (777)
Q Consensus 522 ~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 601 (777)
....++..+||..|.++.... ..|..++|||||||||||++|||+|++|+|++.+||.+|+.||+
T Consensus 234 ---~~~~~~~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~ 298 (339)
T d2id4a2 234 ---VMAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAV 298 (339)
T ss_dssp ---EEEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCB
T ss_pred ---cceeeeeeccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCc
Confidence 345568888999998876542 46888999999999999999999999999999999999999999
Q ss_pred ccCCCCCc-ccCCCCCCCCCCceeeeccCccccCCC
Q 004047 602 MKNNKALP-ITNADGSIATPFSFGSGHFRPTKAADP 636 (777)
Q Consensus 602 ~~~~~g~~-~~~~~~~~~~~~~~G~G~vn~~~Al~~ 636 (777)
+++..+.. ..+.......+..||||+||+.+||+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 299 GLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp CCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred ccCCCCCccccccCCCCCcCCCccchhhCHHHHHHH
Confidence 87654221 111112334566799999999999984
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=4.4e-31 Score=286.14 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=106.0
Q ss_pred cccCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCcccceecCCccccccccceeeeeeecccccccccCCCCCCCCCC
Q 004047 137 SKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDR 216 (777)
Q Consensus 137 ~~g~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 216 (777)
..+++|+||+|||||||||++||+|.+. |+. + ... ....
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~-------~---------------~~~-----------~~~~ 56 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS-------L---------------GVS-----------APQV 56 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH-------T---------------TCC-----------CCCE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh-------c---------------CCC-----------CCCC
Confidence 3689999999999999999999999631 000 0 000 0001
Q ss_pred CCCCCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH---
Q 004047 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI--- 293 (777)
Q Consensus 217 ~~~D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~--- 293 (777)
.+.|..+|+||+++++++...+. ......+.||||+|+|+.+|+.... ..++.++++++
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~-----~~d~~~~~GvAp~A~i~~~~~~~~~-------------~~~~~~i~~~~~~~ 118 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEV-----ELDIEVAGALAPGAKIAVYFAPNTD-------------AGFLNAITTAVHDP 118 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHH-----HHHHHHHHHHSTTSEEEEEECCSSH-------------HHHHHHHHHHHHCT
T ss_pred ceeCCCCCCCCCCCccccccccc-----cCCcccceeecccCeEEEEecccCC-------------CchHHHHHHHHHhh
Confidence 23456789999988887642110 0011235799999999999996532 33455555554
Q ss_pred hCCceEEEeecCCCCCC--CCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCCc--------CCCcceeeeccCc
Q 004047 294 RDGVHVLSISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS--------NLAPWLITVGAGS 359 (777)
Q Consensus 294 ~~gvdVIn~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~~--------~~ap~vitVgAs~ 359 (777)
+++++|||+|||..... ......+......+..+|+++|+++||+|....... ...+++++|++..
T Consensus 119 ~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (357)
T d1t1ga_ 119 THKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR 194 (357)
T ss_dssp TTCCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred hcCCeEEecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence 46999999999983211 111234555666788899999999999985432211 1346777777653
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=3.6e-28 Score=264.62 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=91.6
Q ss_pred CCCCCccchhhccccCCCCCCCccCCcCCCceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh-CCce
Q 004047 220 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR-DGVH 298 (777)
Q Consensus 220 D~~gHGThVAGiiaG~~~~~~~~~gg~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~-~gvd 298 (777)
+..+||||+++++.+.. ....+.||||+|+|+.+|++.+. + .....+++++|+||++ .+++
T Consensus 66 ~~~~~~~~~~~~~e~~l----------d~~~~~gvAp~a~~~~~~~~~~~--~------~~~~~~~~~a~~~a~~~~~~~ 127 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDL----------DSQSIVGSAGGAVQQLLFYMADQ--S------ASGNTGLTQAFNQAVSDNVAK 127 (369)
T ss_dssp TTSCCCBCHHHHHHHHH----------HHHHHHHHTTSCEEEEEEEEECT--T------SSTTHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCcceeecc----------ccccccccccCceEEEEEEeCCC--C------CcchHHHHHHHHHHHHcCCCc
Confidence 46789999999987652 11235799999999999999876 4 4678899999999986 5799
Q ss_pred EEEeecCCCCC---CCCCccHHHHHHHHHHhCCcEEEEecCCCCCCCCCC-------------cCCCcceeeeccCc
Q 004047 299 VLSISIGTNQP---FAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL-------------SNLAPWLITVGAGS 359 (777)
Q Consensus 299 VIn~SlG~~~~---~~~~~~~~~~a~~~a~~~Gi~vV~aAGN~G~~~~~~-------------~~~ap~vitVgAs~ 359 (777)
|||+|||.... .....+.+..++.++..+||+||+||||+|...... ....+++++|+++.
T Consensus 128 Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 128 VINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp EEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred eeeccccccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 99999997321 123345566777888999999999999998543211 12247888888754
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.66 E-value=2.7e-08 Score=78.53 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=53.7
Q ss_pred CcEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEeeeeEeEEEEEcCHHHHHHhhcCCCeEEEEeCCC
Q 004047 23 KQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHP 102 (777)
Q Consensus 23 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~~~ 102 (777)
+++|||.||++... .....+.+++++. ..++.++|+ .||||+++|++++++.|+++|+|.+||+|+
T Consensus 1 e~~YIV~fK~~~~~-----~~~~~~~~~v~~~-------gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~- 66 (71)
T d1scjb_ 1 EKKYIVGFKQTMSA-----MSSAKKKDVISQK-------GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDH- 66 (71)
T ss_dssp CEEEEEEECSSSSC-----CSHHHHHHHHHTT-------TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECC-
T ss_pred CCcEEEEECCCCCh-----HHHHHHHHHHHHc-------CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCc-
Confidence 47899999998732 2233344444332 257899998 499999999999999999999999999998
Q ss_pred Cccc
Q 004047 103 EKYS 106 (777)
Q Consensus 103 ~~~~ 106 (777)
.++
T Consensus 67 -v~~ 69 (71)
T d1scjb_ 67 -IAH 69 (71)
T ss_dssp -EEE
T ss_pred -EEE
Confidence 554
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.52 E-value=1.3e-07 Score=74.81 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=51.0
Q ss_pred cEEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhccceEEEee-eeEeEEEEEcCHHHHHHhhcCCC--eEEEEeC
Q 004047 24 QVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYK-HSINGFSAVLTPDEAARLSELEE--VVSVYPS 100 (777)
Q Consensus 24 ~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~ng~s~~~~~~~~~~L~~~~~--V~~V~~~ 100 (777)
.+|||.||+.. +....+.+..++.... ..+.+.|. ..|+||+++++++.++.|+++|+ |.+||+|
T Consensus 3 G~YIVvlK~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D 70 (72)
T d1v5ib1 3 GKFIVIFKNDV-----SEDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (72)
T ss_dssp EEEEEEECTTC-----CHHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ccEEEEECCCC-----CHHHHHHHHHHHHhcC-------CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCC
Confidence 68999999977 2344455555555433 35667777 58999999999999999999665 9999998
Q ss_pred C
Q 004047 101 H 101 (777)
Q Consensus 101 ~ 101 (777)
.
T Consensus 71 ~ 71 (72)
T d1v5ib1 71 H 71 (72)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.0006 Score=63.29 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=55.1
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecCCCCCCcc-------------ccC-------------------
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY-------------SYD------------------- 465 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~-------------~~~------------------- 465 (777)
..+++|||+|+++|.+.+.+|..+|++.||.|+|+|.+..+.... .+|
T Consensus 58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~ 137 (193)
T d1de4c2 58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 137 (193)
T ss_dssp SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCC
T ss_pred ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcccc
Confidence 357899999999999999999999999999999999874421100 000
Q ss_pred --CccccEEEEeHHHHHHHHHHH
Q 004047 466 --AHYLPATAVLYDDAIKIHEYI 486 (777)
Q Consensus 466 --~~~~p~~~i~~~~g~~l~~~~ 486 (777)
...||+.-|+..|++.|++.+
T Consensus 138 ~~lP~IP~~PIS~~dA~~lL~~L 160 (193)
T d1de4c2 138 SGLPNIPVQTISRAAAEKLFGNM 160 (193)
T ss_dssp TTSCSSCEEECCHHHHHHHHTTB
T ss_pred CCCCcCCeeeCCHHHHHHHHHHc
Confidence 135899999999999998865
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.41 E-value=0.021 Score=47.33 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=63.6
Q ss_pred CCCCeeEeecCCceEEEEEEEEecCCCCee-EEEEeeCCCccEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCc
Q 004047 675 LNYPSIAIPNLNGTVIVKRTVTNVGGSKSV-YFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQ 753 (777)
Q Consensus 675 ln~ps~~~~~~~~~~t~~~tvtn~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 753 (777)
+..|++.+.- ....+++++|+|.|+...+ -++.++.|.|=.+. +....+ ++|++++++++|+++ .....|.
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p----~~a~~G~ 77 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVP----AGTTPGR 77 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECC----TTCCCEE
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECC----CCCCCce
Confidence 4557777653 3578999999999986644 57888899998875 444445 679999999999996 3556666
Q ss_pred eEEEEEEEECCccEEEeeEEEE
Q 004047 754 YVFGWYRWTDGLHLVRSPMAVS 775 (777)
Q Consensus 754 ~~~G~~~~~~~~~~v~~P~~~~ 775 (777)
|. =.+..+.+.......|-+.
T Consensus 78 Y~-i~~~a~~~~~~~s~t~tvt 98 (103)
T d1w8oa1 78 YR-VGATLRTSAGNASTTFTVT 98 (103)
T ss_dssp EE-EEEEEEETTEEEEEEEEEE
T ss_pred EE-EEEEEEeCCcceEEEEEEE
Confidence 64 3455555544444455443
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0032 Score=60.16 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=36.0
Q ss_pred CCcccceEEEEecCCcchhhhhHHHhhcCceEEEEecC
Q 004047 418 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS 455 (777)
Q Consensus 418 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~ 455 (777)
..+++|||+|+++|.+.+.+|..+|+..||.|+|+|++
T Consensus 76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysD 113 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSD 113 (233)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecC
Confidence 45899999999999999999999999999999999986
|