Citrus Sinensis ID: 004057

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770------
MEELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHcccHHHHHHHHHHHHcccEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHccccEEEEEcccHHHHHHcccccccEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEEccccEEEEcccccEEEEEEEEccccccccccEEEEEEccccccccccEEEEEEEEcccccEEEEEEEccccccccccccEEEcccccccEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEEcccccccccEEEEEcccccccccccccEEEEEEccEEEEEEEEEccEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEEEEEccccEEEEccccccEEccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccEEEEEEccccccccEEEHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHccHHHHHHHHHHHHcccEEEcccccccEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEccHHHHHHHHHcccccEEEEEEcHHHHHHHHHccccEEEEEcccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccHccccccccccccccccccEEEEEEccccccccEEEEEEccccEEEEEcccccEEEEEEEEccccHHccccccEEccccccccccccEEEEEEEEccccccEEEEEEEccccccccccccccccccccccEEEEccEEEEEEccccccEEEEEEccccEEEEEEEEEEEEEcccccccccEEEEccccccccccccccEEEEEEccHHHHHHHcccHHHHHEEEEcccccEEEEEEEEcccccccccccEEEEEEEEEcccccEEEEccccHHHHHHHHcccccccccccccccccccccccEEEc
MEELKSLASVLLCVLCLCSavvngsdyvkyntgagvvAGKLNVHLVAHshddvgwlktVDQYYVGSNNSIQSACVENVLDSVVEALrrdpnrkfVFAEMAFFhrwwvgqspeIQEQVRKLVDAsqlefvnggwcmhdeatthyvdmidqttlgHHYIKQhfnktpkagwqidpfghSAVQAYLLGVELGFDSVHFARIDYQDrakrkedksLEVIWRgsktfgsssqiftnafpvhysppsgfhfeltddfdpvqdnplldgynveQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGgrvnalystpslyteaknaangpwplktddyfpyadrrnaywtgfftsrpalkGYVRVLSGFYLASRQLEFlagkkspgpttsaLGDALGIaqhhdavtgtakqhtTNDYAKRLAIGASEAEVVVSSSLSclasrksghqctkpastfsqcpllnisycpptekgipegknLVVAAynplgwnrtdiiripvndanlivkdplgnainVQYVNLDNVTSNLRKFYTEAylgqsskrvprYWLLFQvtvpplgwntyFISRAAGKVKRRKgfflaadspqdktvevgpgnlkmsfSRTTGQLKRMynsrtgvdvpiqQSFLWYgsmvdtqssgayifrpngaqpnvvsrsvpikiirgpmvdEVHQQFNSWIYQVTRLYidkehaeveytigpiptedsvgKEVISRMTANMVTEKVfytdsngrDFLKRVRDYRAdwslqvnepvagnyypVIFFLLI
MEELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYqdrakrkedkslevIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEaknaangpwplkTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASrksghqctkpastfsqcpllNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLgqsskrvprYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFflaadspqdktvevgpgnlkmsfSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYifrpngaqpnvvSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVeytigpiptedsvgKEVISRMTAnmvtekvfytdsngrdfLKRVRDYRADWslqvnepvagnyyPVIFFLLI
MEELKslasvllcvlclcsavvNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGaseaevvvssslsclasRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI
******LASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRA******SLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLA*************DALGIAQHHDAVTGTA**HTTNDYAKRLAIGASEAEVVVSSSLSCLA***********ASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAA*************************LKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLL*
****KSL*SVLLCVLCLCSAVVNGSDYVKYN***GVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYC***********NLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFIS*********************KTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI
MEELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLS**************ASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI
*EELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAG****************DKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query776 2.2.26 [Sep-21-2011]
Q8VHC8 1007 Lysosomal alpha-mannosida yes no 0.918 0.708 0.424 1e-169
O09159 1013 Lysosomal alpha-mannosida yes no 0.923 0.707 0.424 1e-167
O46432 1007 Lysosomal alpha-mannosida N/A no 0.911 0.702 0.420 1e-166
O00754 1011 Lysosomal alpha-mannosida yes no 0.907 0.696 0.416 1e-162
Q60HE9 1012 Lysosomal alpha-mannosida N/A no 0.907 0.695 0.417 1e-162
Q29451 999 Lysosomal alpha-mannosida yes no 0.926 0.719 0.404 1e-160
P34098 1010 Lysosomal alpha-mannosida yes no 0.939 0.721 0.391 1e-158
Q8BRK9 1152 Alpha-mannosidase 2x OS=M no no 0.902 0.607 0.281 4e-71
Q16706 1144 Alpha-mannosidase 2 OS=Ho no no 0.886 0.601 0.273 7e-70
P49641 1150 Alpha-mannosidase 2x OS=H no no 0.887 0.599 0.276 1e-69
>sp|Q8VHC8|MA2B1_CAVPO Lysosomal alpha-mannosidase OS=Cavia porcellus GN=MAN2B1 PE=1 SV=1 Back     alignment and function desciption
 Score =  596 bits (1537), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 324/763 (42%), Positives = 440/763 (57%), Gaps = 50/763 (6%)

Query: 24  GSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVV 83
           G+    Y T   V  G LNVHLVAH+HDDVGWLKTVDQYY G +N +Q A V+ +LDSV+
Sbjct: 44  GARAAGYETCPMVQPGMLNVHLVAHTHDDVGWLKTVDQYYWGIHNDLQQAGVQYILDSVI 103

Query: 84  EALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHY 143
            AL  +P R+FV+ EMAFF RWW  Q+ E QE VR+LV   +LEF NGGW M+DEA THY
Sbjct: 104 SALLAEPTRRFVYVEMAFFSRWWHQQTNETQEVVRRLVRQGRLEFANGGWVMNDEAATHY 163

Query: 144 VDMIDQTTLGHHYIKQHF--NKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQ 201
             ++DQ TLG  +++  F  +  P+  W IDPFGHS  QA L   ++GFD V F RIDYQ
Sbjct: 164 GAIVDQMTLGLRFLEDTFGSDGRPRVAWHIDPFGHSREQASLFA-QMGFDGVFFGRIDYQ 222

Query: 202 DRAKRKEDKSLEVIWRGSKTFGS-SSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLL 260
           D+  RK+ + +E++WR S +  + ++ +FT   P +Y PP G  +++     PV D+P  
Sbjct: 223 DKLVRKKRREMELVWRASASLKAPAADLFTGVLPNNYGPPEGLCWDVLCADPPVVDDPRS 282

Query: 261 DGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVN---- 316
             YN ++ V+ F+  A  Q    R NH + TMG DFQY+ A +WFK +DKLI  VN    
Sbjct: 283 PEYNAKKLVSYFLQLATAQGRYYRTNHTVMTMGSDFQYENANTWFKNLDKLIQLVNMQQA 342

Query: 317 KGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRV 376
            G RV+ LYSTP+ Y    N AN  WP+K DD+FPYAD  + +WTG+F+SRPALK Y R+
Sbjct: 343 NGSRVHVLYSTPACYLWELNKANLTWPVKEDDFFPYADGPHMFWTGYFSSRPALKRYERL 402

Query: 377 LSGFYLASRQLEFLAGKKSP-GP----TTSALGDALGIAQHHDAVTGTAKQHTTNDYAKR 431
              F     QLE   G  +  GP     +S L  A+ + QHHDAV+GT+KQH  +DYA++
Sbjct: 403 SYNFLQVCNQLEAQVGPAANVGPYGHGDSSPLNQAMAVLQHHDAVSGTSKQHVADDYARQ 462

Query: 432 LAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLV 491
           LA G    EV++S++L+ L+  K          TF  C  LNIS CP ++      +   
Sbjct: 463 LAAGWGPCEVLLSNALAKLSGSK---------ETFLFCRDLNISICPFSQT----SERFQ 509

Query: 492 VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQS 551
           V  YNPLG     ++R+PV     ++KDP  N +    V L                  +
Sbjct: 510 VLVYNPLGRKVDRMVRLPVRKGLFLIKDPGNNTVPSTVVEL------------------T 551

Query: 552 SKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMS 611
           S   P   LLF   VP LG++ Y ++R + +  + +             + +    L+ S
Sbjct: 552 SSGNPE--LLFPALVPALGFSVYSVTRVSDQNPQTRSQHSRPQKYSSPVLSIKNEYLRAS 609

Query: 612 FSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMV----DTQSSGAYIFRPNGAQPNVVSRS 667
           F   TG L  +      + +P+ Q+F WY + V     +Q+SGAYIFRP+   P  VS  
Sbjct: 610 FHPDTGLLSMIEVLDRKLTLPVNQAFFWYNASVGDKRSSQASGAYIFRPSQQWPFPVSHL 669

Query: 668 VPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTA 727
              ++++  +V EVHQ F +W  QV RLY  + H E+E+T+GPIP  D  GKE+ISR   
Sbjct: 670 ARTRLVKTALVQEVHQNFTAWCSQVVRLYSGQRHLELEWTVGPIPVGDKWGKEIISRFDT 729

Query: 728 NMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPV 770
            + T  VF+TDSNGR+ L+R RDYR  W L   EPVAGNYYPV
Sbjct: 730 PLETGGVFFTDSNGREVLERRRDYRPSWKLNQTEPVAGNYYPV 772
Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.
Cavia porcellus (taxid: 10141)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 4
>sp|O09159|MA2B1_MOUSE Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1 PE=2 SV=4 Back     alignment and function description
>sp|O46432|MA2B1_FELCA Lysosomal alpha-mannosidase OS=Felis catus GN=MAN2B1 PE=2 SV=1 Back     alignment and function description
>sp|O00754|MA2B1_HUMAN Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3 Back     alignment and function description
>sp|Q60HE9|MA2B1_MACFA Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1 Back     alignment and function description
>sp|Q29451|MA2B1_BOVIN Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3 Back     alignment and function description
>sp|P34098|MANA_DICDI Lysosomal alpha-mannosidase OS=Dictyostelium discoideum GN=manA PE=1 SV=2 Back     alignment and function description
>sp|Q8BRK9|MA2A2_MOUSE Alpha-mannosidase 2x OS=Mus musculus GN=Man2a2 PE=2 SV=2 Back     alignment and function description
>sp|Q16706|MA2A1_HUMAN Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2 Back     alignment and function description
>sp|P49641|MA2A2_HUMAN Alpha-mannosidase 2x OS=Homo sapiens GN=MAN2A2 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query776
224071325 1011 predicted protein [Populus trichocarpa] 0.975 0.748 0.797 0.0
255579994 891 lysosomal alpha-mannosidase, putative [R 0.969 0.843 0.780 0.0
225431096 1006 PREDICTED: lysosomal alpha-mannosidase [ 0.981 0.757 0.765 0.0
357517983 1018 Lysosomal alpha-mannosidase [Medicago tr 0.983 0.749 0.762 0.0
356561136 1012 PREDICTED: lysosomal alpha-mannosidase-l 0.987 0.756 0.755 0.0
356502776 1012 PREDICTED: lysosomal alpha-mannosidase-l 0.987 0.756 0.761 0.0
356495356 1004 PREDICTED: lysosomal alpha-mannosidase-l 0.971 0.750 0.767 0.0
356502778 1028 PREDICTED: lysosomal alpha-mannosidase-l 0.987 0.745 0.746 0.0
449491456 1007 PREDICTED: lysosomal alpha-mannosidase-l 0.970 0.747 0.709 0.0
449434476 1007 PREDICTED: lysosomal alpha-mannosidase-l 0.970 0.747 0.712 0.0
>gi|224071325|ref|XP_002303405.1| predicted protein [Populus trichocarpa] gi|222840837|gb|EEE78384.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1270 bits (3286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/761 (79%), Positives = 654/761 (85%), Gaps = 4/761 (0%)

Query: 11  LLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSI 70
            + V  L   VVNG  YV YNTG GVV GKLNVHLV HSHDDVGWLKTVDQYYVGSNNSI
Sbjct: 19  FVVVFGLHGTVVNGG-YVDYNTGGGVVPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSI 77

Query: 71  QSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVN 130
           Q ACVENVLDSVVE+LRRD NRKFVF EMAFF RWWV QS EIQEQVRKLVDA QLEFVN
Sbjct: 78  QGACVENVLDSVVESLRRDSNRKFVFVEMAFFQRWWVEQSEEIQEQVRKLVDAGQLEFVN 137

Query: 131 GGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 190
           GGWCMHDEAT HY+DMIDQTTLGH  IK+ FNKTP+AGWQIDPFGHSAVQAYLLG ELGF
Sbjct: 138 GGWCMHDEATCHYIDMIDQTTLGHRAIKEQFNKTPRAGWQIDPFGHSAVQAYLLGTELGF 197

Query: 191 DSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDD 250
           DSVHFARIDYQDRAKRK+DK+LEVIWRGSKTFGSSSQIF NAFPVHYSPP+GFHFE+ DD
Sbjct: 198 DSVHFARIDYQDRAKRKDDKALEVIWRGSKTFGSSSQIFANAFPVHYSPPNGFHFEVFDD 257

Query: 251 FDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDK 310
           F PVQDNPLLD YNVEQ VNDFI+AA+TQANVTR NHIMWTMGDDFQYQYAESWFKQMDK
Sbjct: 258 FVPVQDNPLLDDYNVEQRVNDFINAAMTQANVTRTNHIMWTMGDDFQYQYAESWFKQMDK 317

Query: 311 LIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPAL 370
           LIHYVNK GRVNALYSTPS+YT+ KNAAN  WPLKTDDYFPYAD  NAYWTGFFTSRPAL
Sbjct: 318 LIHYVNKDGRVNALYSTPSIYTDVKNAANESWPLKTDDYFPYADTENAYWTGFFTSRPAL 377

Query: 371 KGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAK 430
           K YVR LSG+YLA+RQLEFL GKKS GP T  LGDALGIAQHHD VTGTAKQHTTNDY K
Sbjct: 378 KRYVRQLSGYYLAARQLEFLVGKKSTGPNTYRLGDALGIAQHHDGVTGTAKQHTTNDYEK 437

Query: 431 RLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNL 490
           RLAIGA EAE  VSS+LSCL S KS  QC KPA  FSQC LLNISYCPPTE+ I  GK L
Sbjct: 438 RLAIGALEAEATVSSALSCLVSNKSRDQCAKPALNFSQCQLLNISYCPPTEEAIANGKRL 497

Query: 491 VVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQ 550
           V+  YN LGWNRTD+IRIPVND NL+V D  G  I  QYV +DN TSNLR FY +AY G 
Sbjct: 498 VMVLYNALGWNRTDVIRIPVNDPNLVVADSYGKHIETQYVTMDNTTSNLRNFYLKAY-GF 556

Query: 551 SSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKM 610
            S +VPRYWL FQV+VPPLGW+TYFI+RA G  KRR G  +  DSPQ+ T+E+G GNLKM
Sbjct: 557 PSIQVPRYWLHFQVSVPPLGWSTYFIARATGIGKRRNGLSV-MDSPQNDTIEIGSGNLKM 615

Query: 611 SFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVD-TQSSGAYIFRPNGAQPNVVSRSVP 669
           SFS  TGQLKRMYNS+TGVDVPIQQS+ WYGS  +  QSSGAYI RP+G+ P+VV+RSVP
Sbjct: 616 SFSSMTGQLKRMYNSKTGVDVPIQQSYFWYGSSSELMQSSGAYILRPDGSPPHVVARSVP 675

Query: 670 IKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANM 729
           +++ RGP+ DEV QQFNSWIYQVTR+Y D+EHAE+EYTIGPIP EDSVGKEVI+RMTANM
Sbjct: 676 LQVHRGPLFDEVRQQFNSWIYQVTRVYKDQEHAELEYTIGPIPLEDSVGKEVITRMTANM 735

Query: 730 VTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPV 770
            TEKVFYTDSNGRDFLKR+RDYRADWSL VNEPVAGNYYP+
Sbjct: 736 ATEKVFYTDSNGRDFLKRIRDYRADWSLSVNEPVAGNYYPL 776

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579994|ref|XP_002530831.1| lysosomal alpha-mannosidase, putative [Ricinus communis] gi|223529595|gb|EEF31544.1| lysosomal alpha-mannosidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225431096|ref|XP_002265360.1| PREDICTED: lysosomal alpha-mannosidase [Vitis vinifera] gi|297734991|emb|CBI17353.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357517983|ref|XP_003629280.1| Lysosomal alpha-mannosidase [Medicago truncatula] gi|355523302|gb|AET03756.1| Lysosomal alpha-mannosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356561136|ref|XP_003548841.1| PREDICTED: lysosomal alpha-mannosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|356502776|ref|XP_003520192.1| PREDICTED: lysosomal alpha-mannosidase-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356495356|ref|XP_003516544.1| PREDICTED: lysosomal alpha-mannosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|356502778|ref|XP_003520193.1| PREDICTED: lysosomal alpha-mannosidase-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449491456|ref|XP_004158902.1| PREDICTED: lysosomal alpha-mannosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434476|ref|XP_004135022.1| PREDICTED: lysosomal alpha-mannosidase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query776
TAIR|locus:2156857 1047 AT5G66150 [Arabidopsis thalian 0.829 0.615 0.685 1.3e-286
TAIR|locus:2090817 1019 AT3G26720 [Arabidopsis thalian 0.957 0.729 0.577 4.8e-245
TAIR|locus:2159143 1024 AT5G13980 [Arabidopsis thalian 0.953 0.722 0.585 2.1e-244
UNIPROTKB|G5E928 1010 MAN2B1 "Mannosidase, alpha, cl 0.621 0.477 0.431 1.5e-155
UNIPROTKB|F1PKB2 1007 MAN2B1 "Uncharacterized protei 0.627 0.483 0.434 1.9e-155
UNIPROTKB|O00754 1011 MAN2B1 "Lysosomal alpha-mannos 0.621 0.476 0.431 2.4e-155
UNIPROTKB|F1SEY1 1008 MAN2B1 "Uncharacterized protei 0.635 0.489 0.431 1.3e-154
ZFIN|ZDB-GENE-050327-52 982 man2b1 "mannosidase, alpha, cl 0.903 0.713 0.422 5.2e-152
UNIPROTKB|F1MMX7 999 MAN2B1 "Lysosomal alpha-mannos 0.635 0.493 0.425 6.7e-147
UNIPROTKB|Q29451 999 MAN2B1 "Lysosomal alpha-mannos 0.635 0.493 0.423 4.7e-146
TAIR|locus:2156857 AT5G66150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2402 (850.6 bits), Expect = 1.3e-286, Sum P(2) = 1.3e-286
 Identities = 445/649 (68%), Positives = 512/649 (78%)

Query:    24 GSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVV 83
             G  YVKY T A VV GKLNVHLV HSHDDVGWLKTVDQYYVGSNN IQ+ACV NVLDSVV
Sbjct:    30 GGGYVKYGTEAKVVPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNRIQNACVRNVLDSVV 89

Query:    84 EALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHY 143
             ++L RDPNRKFVFAEMAFF RWW  QSPE QEQVR+LV + QLEFVNGGW M+DEAT HY
Sbjct:    90 DSLLRDPNRKFVFAEMAFFTRWWEEQSPERQEQVRRLVKSGQLEFVNGGWAMNDEATCHY 149

Query:   144 VDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDR 203
             +DMIDQTT GH +IKQ FN TP+A WQIDPFGHS+VQAYLLG ELG DSVHFARIDYQDR
Sbjct:   150 IDMIDQTTKGHRFIKQQFNTTPRAAWQIDPFGHSSVQAYLLGAELGLDSVHFARIDYQDR 209

Query:   204 AKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGY 263
              KRK +KSLEVIWRGSKT  SSSQIFTN F VHY PP+GFH+E+TDD+ P+QDNP  DGY
Sbjct:   210 EKRKAEKSLEVIWRGSKTLDSSSQIFTNIFFVHYGPPTGFHYEVTDDYVPLQDNPRFDGY 269

Query:   264 NVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNA 323
             N+++ VNDF++A+L  ANV+R NH+MWTMGDDFQYQ+AESWF+QMD+LIHYVNK GRVNA
Sbjct:   270 NIKEAVNDFVNASLVYANVSRGNHVMWTMGDDFQYQFAESWFRQMDRLIHYVNKDGRVNA 329

Query:   324 LYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLA 383
             LYSTPSLY +AKN AN  WPLKT D+FPYADR  AYWTG+FTSRPALK YVR LSG+Y+A
Sbjct:   330 LYSTPSLYVDAKNVANVTWPLKTHDFFPYADRAYAYWTGYFTSRPALKRYVRALSGYYMA 389

Query:   384 SRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXX 443
             +RQLEFL GK S GP T +LGDALGIAQHHDAVTGTAKQH TNDY KRLA+G        
Sbjct:   390 ARQLEFLVGKNSGGPNTYSLGDALGIAQHHDAVTGTAKQHVTNDYMKRLALGASEAEAVV 449

Query:   444 XXXXXXXXXRKSGHQCTKPASTFSQ-CPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNR 502
                      +     CTKPA  FSQ C L+NISYCP TE+ +P  K+L++ AYN LGWNR
Sbjct:   450 NSALACLMNKAPKGGCTKPAIAFSQQCSLMNISYCPSTEETLPGQKSLILVAYNSLGWNR 509

Query:   503 TDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLF 562
             T+IIRIPVNDA L V+D  GN ++ QY+ +DNVTSNLR FYT+AYLG SS + P+YWL+F
Sbjct:   510 TEIIRIPVNDAGLSVEDSSGNTLDAQYIPMDNVTSNLRSFYTKAYLGISSLQRPKYWLVF 569

Query:   563 QVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRM 622
             +  VPPLGWNT+FIS+A+ +            SP + T E+GPGNLKM FS  +G+L+RM
Sbjct:   570 KAKVPPLGWNTFFISKASAQGSNNHKHSSVMLSPMNNTTEIGPGNLKMVFSSDSGRLERM 629

Query:   623 YNSRTGVDVPIQQSFLWYGSMV----DTQSSGAYIFRPNGAQPNVVSRS 667
             YNSRTG D+ + Q++ WY S V    D Q SGAYIFRPNG+    VS S
Sbjct:   630 YNSRTGADIKVDQNYFWYASNVGDAKDPQVSGAYIFRPNGSLAYPVSSS 678
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0004559 "alpha-mannosidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006013 "mannose metabolic process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0015923 "mannosidase activity" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2090817 AT3G26720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159143 AT5G13980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G5E928 MAN2B1 "Mannosidase, alpha, class 2B, member 1, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKB2 MAN2B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O00754 MAN2B1 "Lysosomal alpha-mannosidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SEY1 MAN2B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050327-52 man2b1 "mannosidase, alpha, class 2B, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMX7 MAN2B1 "Lysosomal alpha-mannosidase D peptide" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q29451 MAN2B1 "Lysosomal alpha-mannosidase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_III000676
hypothetical protein (1011 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query776
cd10810278 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic 1e-174
cd00451258 cd00451, GH38N_AMII_euk, N-terminal catalytic doma 1e-112
PLN02701 1050 PLN02701, PLN02701, alpha-mannosidase 1e-103
pfam01074269 pfam01074, Glyco_hydro_38, Glycosyl hydrolases fam 3e-96
cd10809340 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal 3e-79
cd11666344 cd11666, GH38N_Man2A1, N-terminal catalytic domain 6e-55
cd11667344 cd11667, GH38N_Man2A2, N-terminal catalytic domain 2e-54
cd10811326 cd10811, GH38N_AMII_Epman_like, N-terminal catalyt 1e-53
cd10786251 cd10786, GH38N_AMII_like, N-terminal catalytic dom 1e-50
smart0087279 smart00872, Alpha-mann_mid, Alpha mannosidase, mid 2e-22
pfam07748 379 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases fa 1e-21
pfam0926182 pfam09261, Alpha-mann_mid, Alpha mannosidase, midd 2e-20
cd10789252 cd10789, GH38N_AMII_ER_cytosolic, N-terminal catal 3e-10
cd10785203 cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain 1e-09
cd10812258 cd10812, GH38N_AMII_ScAms1_like, N-terminal cataly 1e-06
cd10813252 cd10813, GH38N_AMII_Man2C1, N-terminal catalytic d 6e-05
cd10814271 cd10814, GH38N_AMII_SpGH38_like, N-terminal cataly 2e-04
cd10793279 cd10793, GH57N_TLGT_like, N-terminal catalytic dom 0.001
cd10791254 cd10791, GH38N_AMII_like_1, N-terminal catalytic d 0.002
>gnl|CDD|212121 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information 
 Score =  500 bits (1289), Expect = e-174
 Identities = 165/279 (59%), Positives = 207/279 (74%), Gaps = 3/279 (1%)

Query: 41  LNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMA 100
           LNVHLV H+HDDVGWLKTVDQYY GSNNSIQ A V+ +LDSV+E L ++P+RKF++ E+A
Sbjct: 1   LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIA 60

Query: 101 FFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQH 160
           FF RWW  QS + +++V+KLV   QLEF+NGGWCM+DEATTHY D+IDQ TLGH ++K  
Sbjct: 61  FFSRWWREQSEDTRQKVKKLVKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDT 120

Query: 161 FNK--TPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRG 218
           F +   P+ GWQIDPFGHS  QA L   ++GFD + F RIDYQD+A+R ++K +E IWRG
Sbjct: 121 FGECARPRVGWQIDPFGHSRTQASLFA-QMGFDGLFFGRIDYQDKAQRLKNKEMEFIWRG 179

Query: 219 SKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALT 278
           S + G  + IFT     HY PP GF F++    +P+QD+P L+ YNV++ V+DF+  A  
Sbjct: 180 SPSLGPDADIFTGVLYNHYGPPPGFCFDILCGDEPIQDDPNLEDYNVDERVDDFVQYAKE 239

Query: 279 QANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNK 317
           QA   R NHIM TMG DFQYQ AE WFK MDKLI YVNK
Sbjct: 240 QAQHYRTNHIMLTMGSDFQYQNAEMWFKNMDKLIKYVNK 278

The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base. Length = 278
>gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase Back     alignment and domain information
>gnl|CDD|216284 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal domain Back     alignment and domain information
>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212131 cd11666, GH38N_Man2A1, N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212132 cd11667, GH38N_Man2A2, N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212122 cd10811, GH38N_AMII_Epman_like, N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212098 cd10786, GH38N_AMII_like, N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|214875 smart00872, Alpha-mann_mid, Alpha mannosidase, middle domain Back     alignment and domain information
>gnl|CDD|219551 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family 38 C-terminal domain Back     alignment and domain information
>gnl|CDD|220157 pfam09261, Alpha-mann_mid, Alpha mannosidase, middle domain Back     alignment and domain information
>gnl|CDD|212101 cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212097 cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins Back     alignment and domain information
>gnl|CDD|212123 cd10812, GH38N_AMII_ScAms1_like, N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212124 cd10813, GH38N_AMII_Man2C1, N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212125 cd10814, GH38N_AMII_SpGH38_like, N-terminal catalytic domain of SPGH38, a putative alpha-mannosidase of Streptococcus pyogenes, and its prokaryotic homologs; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212105 cd10793, GH57N_TLGT_like, N-terminal catalytic domain of 4-alpha-glucanotransferase; glycoside hydrolase family 57 (GH57) Back     alignment and domain information
>gnl|CDD|212103 cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 776
KOG1959 996 consensus Glycosyl hydrolase, family 38 - alpha-ma 100.0
PLN02701 1050 alpha-mannosidase 100.0
KOG1958 1129 consensus Glycosyl hydrolase, family 38 - alpha-ma 100.0
PRK09819 875 alpha-mannosidase; Provisional 100.0
KOG4342 1078 consensus Alpha-mannosidase [Carbohydrate transpor 100.0
PF01074275 Glyco_hydro_38: Glycosyl hydrolases family 38 N-te 100.0
COG0383 943 AMS1 Alpha-mannosidase [Carbohydrate transport and 100.0
PF07748 457 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-t 99.96
COG0383 943 AMS1 Alpha-mannosidase [Carbohydrate transport and 99.91
PF0926180 Alpha-mann_mid: Alpha mannosidase, middle domain; 99.84
smart0087279 Alpha-mann_mid Alpha mannosidase, middle domain. M 99.82
PF03065360 Glyco_hydro_57: Glycosyl hydrolase family 57; Inte 98.75
COG1543504 Uncharacterized conserved protein [Function unknow 97.35
PF01522123 Polysacc_deac_1: Polysaccharide deacetylase; Inter 96.54
COG1449615 Alpha-amylase/alpha-mannosidase [Carbohydrate tran 95.79
TIGR03212297 uraD_N-term-dom putative urate catabolism protein. 95.4
TIGR02764191 spore_ybaN_pdaB polysaccharide deacetylase family 94.6
TIGR02884224 spore_pdaA delta-lactam-biosynthetic de-N-acetylas 94.07
TIGR03006265 pepcterm_polyde polysaccharide deactylase family p 93.68
TIGR02873268 spore_ylxY probable sporulation protein, polysacch 92.25
PRK14582671 pgaB outer membrane N-deacetylase; Provisional 89.23
PRK14581672 hmsF outer membrane N-deacetylase; Provisional 86.6
PF07481171 DUF1521: Domain of Unknown Function (DUF1521); Int 81.72
PRK15394296 4-deoxy-4-formamido-L-arabinose-phosphoundecapreno 80.51
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-166  Score=1358.71  Aligned_cols=724  Identities=51%  Similarity=0.870  Sum_probs=668.4

Q ss_pred             ecCCCCccCCeeEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhc
Q 004057           30 YNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQ  109 (776)
Q Consensus        30 ~~~~~~~~~~~~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~  109 (776)
                      |++|+...+.+++||||||||+|+||++|+|+||.|+++.||++.|++|||+|+++|.++|+|||+++|++||.+||.++
T Consensus        26 y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~q  105 (996)
T KOG1959|consen   26 YNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNEQ  105 (996)
T ss_pred             cCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcC--CCCcceeecCCCCCChhhHHHHHhh
Q 004057          110 SPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFN--KTPKAGWQIDPFGHSAVQAYLLGVE  187 (776)
Q Consensus       110 ~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG--~~~~~~w~~D~FG~s~~~p~il~~~  187 (776)
                      ++++++.||+||++|||||+||||+|+|||.+||.++|+|++.||+||.++||  .+|++||||||||||+.+|.||+ +
T Consensus       106 S~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslfA-q  184 (996)
T KOG1959|consen  106 SETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLFA-Q  184 (996)
T ss_pred             CHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHHH-H
Confidence            99999999999999999999999999999999999999999999999999999  79999999999999999999996 9


Q ss_pred             cCCcEEEEeecchhhhhhhccCCceeEEEEcCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCCCCCCCCccccHHH
Q 004057          188 LGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQ  267 (776)
Q Consensus       188 ~G~~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  267 (776)
                      |||++.+|+|+++++|+.|..++.+||+|+|++++++.++|||++|++||++|.+|||+..|.+.|++|+|.+.++|+++
T Consensus       185 mGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~NVke  264 (996)
T KOG1959|consen  185 MGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPPPGFCFDVLCGDDPIIDGPRSYDYNVKE  264 (996)
T ss_pred             hCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCCCCceeccccCCCCCCCCCCCCCccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCeeEEeccCCccCCchhhHHHHHHHHHHHHhcC---C-ceeEEEcChHHHHHHHHhCCCCCC
Q 004057          268 WVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKG---G-RVNALYSTPSLYTEAKNAANGPWP  343 (776)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~il~~~G~Df~~~~a~~~~~~~~~li~~~n~~---~-~~~i~~sT~~~yf~~~~~~~~~~p  343 (776)
                      +++.|++..+.++..|+|||+|+|||+||+|.+|..||+|||+||+++|+.   + .+++.||||++|++++++.+..||
T Consensus       265 rVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~Twp  344 (996)
T KOG1959|consen  265 RVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQTWP  344 (996)
T ss_pred             HHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcCccc
Confidence            999999999999999999999999999999999999999999999999943   4 899999999999999999999999


Q ss_pred             CccCCcccccccCCCcccceeecchhhHHHHHHHHHHHHHHHHHHHhhCCCC--CCCchHHHHHHHHhhccccCCCCCCc
Q 004057          344 LKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKS--PGPTTSALGDALGIAQHHDAVTGTAK  421 (776)
Q Consensus       344 ~~~gD~~py~~~~~~~wtG~ytSr~~~K~~~R~~e~~L~~ae~l~~l~~~~~--~~~~~~~~w~~l~~~qhHD~ItGts~  421 (776)
                      +++.|||||+++++.||||||||||.+|++.|++...|++|++|++++++..  ..+.++.++++|++.|||||||||++
T Consensus       345 ~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~~~~~~dl~~Lream~i~QHHDAVTGTek  424 (996)
T KOG1959|consen  345 VKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSSTEQGPDLDYLREAMAIMQHHDAVTGTEK  424 (996)
T ss_pred             ccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCccccCccHHHHHHHHHHHhhcccccccch
Confidence            9999999999999999999999999999999999999999999999987654  56789999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccCccccccCCCCCCCCCCCCceEEEEEcCCCce
Q 004057          422 QHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWN  501 (776)
Q Consensus       422 ~~V~~d~~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~  501 (776)
                      ++|.+||+++|..++-.++.+++.+++.|....        +..|++|++||+|+||.++.   ..+...|++||||+|.
T Consensus       425 q~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--------~~~f~~C~~lNiS~C~~t~~---~~~~~~v~~YNpLa~~  493 (996)
T KOG1959|consen  425 QHVADDYARRLADGILGAEKLARDALRKLTNLP--------NGEFQSCLLLNISECAFTKD---GADNFIVTLYNPLAHT  493 (996)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------CccchhhhhhccccCCCCcC---CcCcEEEEEEcCCcce
Confidence            999999999999999999999999999998754        34789999999999999863   3578899999999999


Q ss_pred             eeEEEEEEEcCCcEEEEcCCCCEEeEEEEeccccccccccchhhhccCCCCCCCCeEEEEEEEeeCCCceEEEEEEecCC
Q 004057          502 RTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAG  581 (776)
Q Consensus       502 r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~  581 (776)
                      ++++|+|||..++++|.|+.|++|++|++|.......+.          .......++|+|.|.|||+|+++|.|+....
T Consensus       494 ~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~~~~~~eLvf~asvpplg~aty~i~k~~~  563 (996)
T KOG1959|consen  494 VTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRNNDTKHELVFKASVPPLGIATYFIKKVAS  563 (996)
T ss_pred             eeeEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccccCCCceEEEEEEecCccceEEEEeecCc
Confidence            999999999999999999999999999999864432221          1223456899999999999999999996543


Q ss_pred             ccccccccccccCCCCCCceEecCCeEEEEEECCCCceEEEEecCCceEEeeeeeEEEEeecc---CCCCccceeEecCC
Q 004057          582 KVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMV---DTQSSGAYIFRPNG  658 (776)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~~~~leN~~~~v~~~~~~G~i~sl~dk~~g~~~~~~~~~~~Y~~~~---~~~~~gaY~f~p~~  658 (776)
                      ......+..............|+|+++++.||..+|.++++....+|++..+.|.|.+|.+..   +.+.||||+|+| +
T Consensus       564 ~~~~~~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~V~Q~f~~Y~~~~g~n~~q~SgAYiFRp-~  642 (996)
T KOG1959|consen  564 TERGSASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTENVDQEFGYYKGYRGDNDKQASGAYIFRP-G  642 (996)
T ss_pred             ccccccccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCcceeeeeeeEEEEeecCCcCCccCcceEecC-C
Confidence            222111111111122334488999999999998889999999888999999999999999765   246799999999 4


Q ss_pred             CcceecC-CCccEEEEecCcEEEEEEEecceEEEEEEEecCCCceEEEEEEccccccCCCCcEEEEEEeeeccCCceEEE
Q 004057          659 AQPNVVS-RSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYT  737 (776)
Q Consensus       659 ~~~~~~~-~~~~i~i~~Gpl~~~i~~~~~~~i~q~irLy~~~~~ie~~~~V~~~~~~~~~~~el~~~f~t~i~s~~~~yt  737 (776)
                      ...+++. ....++|..|||+.+|++.++.+++|.+|+|+|.+++|||+.|+++|++++.++|++.||+|+|.+++.|||
T Consensus       643 ~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew~VGpIp~~d~~gkEvVtr~~t~i~S~g~fYT  722 (996)
T KOG1959|consen  643 QADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEWLVGPIPIDDGIGKEVVTRFSTEISSNGVFYT  722 (996)
T ss_pred             CCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEEEecceecCCCccceEEEEeccccccCceEEe
Confidence            4344443 346788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeeeccccccCcccccccccccccccccccccC
Q 004057          738 DSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI  776 (776)
Q Consensus       738 DsnG~~~ikR~~~~~~~w~~~~~~pi~~NyYPv~s~~~i  776 (776)
                      ||||+||+||.+++|++|....++||+|||||||+.|||
T Consensus       723 DSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~l  761 (996)
T KOG1959|consen  723 DSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYL  761 (996)
T ss_pred             cCcHHHHHHHHhcccCCCccccCccccccccccceeeEE
Confidence            999999999999999999999999999999999999986

>PLN02701 alpha-mannosidase Back     alignment and domain information
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09819 alpha-mannosidase; Provisional Back     alignment and domain information
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold Back     alignment and domain information
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain Back     alignment and domain information
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1543 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase Back     alignment and domain information
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03212 uraD_N-term-dom putative urate catabolism protein Back     alignment and domain information
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB Back     alignment and domain information
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase Back     alignment and domain information
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family Back     alignment and domain information
>PRK14582 pgaB outer membrane N-deacetylase; Provisional Back     alignment and domain information
>PRK14581 hmsF outer membrane N-deacetylase; Provisional Back     alignment and domain information
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins Back     alignment and domain information
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query776
1o7d_A298 The Structure Of The Bovine Lysosomal A-Mannosidase 4e-73
1hxk_A 1015 Golgi Alpha-Mannosidase Ii In Complex With Deoxyman 3e-64
3dx3_A 1045 Golgi Alpha-Mannosidase Ii In Complex With Mannosta 4e-64
1ps3_A 1045 Golgi Alpha-mannosidase Ii In Complex With Kifunens 4e-64
1qwn_A 1045 Golgi Alpha-Mannosidase Ii Covalent Intermediate Co 4e-64
1qwu_A 1045 Golgi Alpha-Mannosidase Ii D341n Mutant Complex Wit 1e-63
3cv5_A 1045 Golgi Mannosidase Ii D204a Catalytic Nucleophile Mu 3e-63
1hty_A 1015 Golgi Alpha-Mannosidase Ii Length = 1015 6e-62
1o7d_D282 The Structure Of The Bovine Lysosomal A-Mannosidase 3e-39
1o7d_B84 The Structure Of The Bovine Lysosomal A-Mannosidase 6e-15
1o7d_C159 The Structure Of The Bovine Lysosomal A-Mannosidase 7e-14
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 298 Back     alignment and structure 
Iteration: 1

 Score =  273 bits (697), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 135/297 (45%), Positives = 185/297 (62%), Gaps = 4/297 (1%)
Query: 30  YNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRD 89
           Y T   V    LNVHLV H+HDDVGWLKTVDQY+ G  N+IQ A V+ +LDSV+ +L  +
Sbjct: 3   YKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLAN 62
Query: 90  PNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQ 149
           P R+F++ E+AFF RWW  Q+   Q+ VR+LV   +LEF NGGW M+DEATTHY  +IDQ
Sbjct: 63  PTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQ 122
Query: 150 TTLGHHYIKQHF--NKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRK 207
            TLG  ++++ F  +  P+  W IDPFGHS  QA L   ++GFD   F R+DYQD+  RK
Sbjct: 123 MTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFA-QMGFDGFFFGRLDYQDKKVRK 181
Query: 208 EDKSLEVIWRGSKTFG-SSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVE 266
           +   +E +WR S +    ++ +FT+  P  Y+PP G  +++     PV ++     YN +
Sbjct: 182 KTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNAK 241
Query: 267 QWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNA 323
           + V  F+  A  Q  + R  H + TMG DFQY+ A +WFK +DKLI  VN   R N 
Sbjct: 242 ELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQQRANG 298
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin Length = 1015 Back     alignment and structure
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin Analog (1r,2r, 3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol Length = 1045 Back     alignment and structure
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine Length = 1045 Back     alignment and structure
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex With 5- Fluoro-Gulosyl-Fluoride Length = 1045 Back     alignment and structure
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With 5-F-Guloside Length = 1045 Back     alignment and structure
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant Complex With 3alpha,6alpha-Mannopentaose Length = 1045 Back     alignment and structure
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii Length = 1015 Back     alignment and structure
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 282 Back     alignment and structure
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 84 Back     alignment and structure
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query776
3bvx_A 1045 Alpha-mannosidase 2; family 38 glycoysl hydrolase, 0.0
1o7d_A298 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 1e-117
2wyh_A 923 Alpha-mannosidase; hydrolase, glycosidase, glycosi 5e-93
3lvt_A 899 Glycosyl hydrolase, family 38; PSI, MCSG, structur 5e-90
1o7d_D282 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 1e-64
1o7d_C159 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 1e-41
1o7d_B84 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 6e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1k1x_A659 4-alpha-glucanotransferase; 2.40A {Thermococcus li 1e-09
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Length = 1045 Back     alignment and structure
 Score =  606 bits (1563), Expect = 0.0
 Identities = 201/799 (25%), Positives = 333/799 (41%), Gaps = 77/799 (9%)

Query: 27  YVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEAL 86
            +KY+        KL V +V HSH+D GW++T ++YY            +++L + +  L
Sbjct: 67  NIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQH--------DTKHILSNALRHL 118

Query: 87  RRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDM 146
             +P  KF++AE+++F R++       + Q++ +V   QLEFV GGW M DEA +H+ ++
Sbjct: 119 HDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNV 178

Query: 147 IDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKR 206
           + Q T G  ++KQ  N TP A W I PFGHS    Y+L  + GF ++   R  Y  + + 
Sbjct: 179 LLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYIL-QKSGFKNMLIQRTHYSVKKEL 237

Query: 207 KEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD--- 252
            + + LE +WR        + +FT+  P + Y  P            F F+    F    
Sbjct: 238 AQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSC 297

Query: 253 -PVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQ---M 308
                   +   NV    +  +D    +A + R N ++  +GDDF+++    W  Q    
Sbjct: 298 PWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNY 357

Query: 309 DKLIHYVNKGGR--VNALYSTPSLYTEA----KNAANGPWPLKTDDYFPYADRRNAYWTG 362
           ++L  ++N      V A + T   Y +A    + A    +P  + D+F YADR + YW+G
Sbjct: 358 ERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSG 417

Query: 363 FFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTGT 419
           ++TSRP  K   RVL  +  A+  L               L  A   L + QHHD +TGT
Sbjct: 418 YYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGT 477

Query: 420 AKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTF----SQCPLLNIS 475
           AK H   DY +R+       ++V+  S+  L ++ S +      S F    S+ P   + 
Sbjct: 478 AKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVE 537

Query: 476 YCPPTEK-GIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDN 534
               T   G     +  V  +N L   R  ++   V+   + V D   N +  Q   + +
Sbjct: 538 DSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWS 597

Query: 535 VTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGK------------ 582
              +                  +Y ++F+  VPP+G  TY ++ +  K            
Sbjct: 598 WHHDTLTKTIHPQGST-----TKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLL 652

Query: 583 -----VKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSF 637
                      +         + + +  GN         G LK +  ++    VP+   F
Sbjct: 653 RKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKF 712

Query: 638 LWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYI 697
           L YG       SGAY+F PNG    V      + + +G +   V     S ++Q      
Sbjct: 713 LKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQTIMRG- 771

Query: 698 DKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSL 757
                     IG +        E++ R+  ++ +  +FYTD NG  F+KR R  +     
Sbjct: 772 GAPEIRNLVDIGSLD-----NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDK----- 821

Query: 758 QVNEPVAGNYYPVIFFLLI 776
               P+  NYYP+   + I
Sbjct: 822 ---LPLQANYYPIPSGMFI 837
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Length = 298 Back     alignment and structure
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Length = 923 Back     alignment and structure
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Length = 899 Back     alignment and structure
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6 Length = 282 Back     alignment and structure
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6 Length = 159 Back     alignment and structure
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1 Length = 84 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* Length = 659 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query776
3bvx_A 1045 Alpha-mannosidase 2; family 38 glycoysl hydrolase, 100.0
2wyh_A 923 Alpha-mannosidase; hydrolase, glycosidase, glycosi 100.0
3lvt_A 899 Glycosyl hydrolase, family 38; PSI, MCSG, structur 100.0
1o7d_A298 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 100.0
1o7d_D282 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 100.0
1o7d_C159 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 99.97
1o7d_B84 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 99.85
1k1x_A659 4-alpha-glucanotransferase; 2.40A {Thermococcus li 99.83
3p0b_A540 TT1467 protein; glycoside hydrolase GH57, glycogen 99.06
3n98_A562 Alpha-amylase, GH57 family; GH57 family member, br 99.01
2b5d_X528 Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2. 98.98
3rxz_A300 Polysaccharide deacetylase; structural genomics, P 96.47
3s6o_A321 Polysaccharide deacetylase family protein; ssgcid, 95.95
3cl6_A308 PUUE allantoinase; URIC acid, nitrogen fixation, h 95.61
3qbu_A326 Putative uncharacterized protein; metallo enzyme, 95.39
2cc0_A195 Acetyl-xylan esterase; hydrolase, carbohydrate est 93.61
2y8u_A230 Chitin deacetylase; hydrolase; 1.99A {Emericella n 92.93
2vyo_A254 ECU11_0510, chitooligosaccharide deacetylase; CE4 92.42
2j13_A247 Polysaccharide deacetylase; family 4, peptidoglyca 91.84
1ny1_A240 Probable polysaccharide deacetylase PDAA; structur 91.0
2iw0_A254 Chitin deacetylase; hydrolase, chitin DE-N-acetyla 90.2
2c71_A216 Glycoside hydrolase, family 11\:clostridium cellul 80.33
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Back     alignment and structure
Probab=100.00  E-value=3.4e-128  Score=1177.17  Aligned_cols=716  Identities=27%  Similarity=0.454  Sum_probs=596.0

Q ss_pred             ecCCCCccCCeeEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhc
Q 004057           30 YNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQ  109 (776)
Q Consensus        30 ~~~~~~~~~~~~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~  109 (776)
                      |..+......+++||+|||||||+||+||+++|+.        +.++++|++|+++|+++|+++|+|+|+++|.+||+++
T Consensus        70 ~~~~~~~~~~~~~V~lV~HsH~D~gWl~t~~e~~~--------~~~~~~~~~vl~~L~~~p~~~F~~~e~~~l~~w~~e~  141 (1045)
T 3bvx_A           70 YDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDL  141 (1045)
T ss_dssp             CCGGGSBTTBCEEEEEEEEEECCSSSSSCHHHHHH--------HTHHHHHHHHHHHHHHCTTCCEEECCHHHHHHHHHHS
T ss_pred             hhccccCCCCceEEEEEecCCCCccccchHHHhhh--------HHHHHHHHHHHHHHHHCCCcEEEEecHHHHHHHHHHC
Confidence            44333333448999999999999999999999986        4688999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHhhcC
Q 004057          110 SPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELG  189 (776)
Q Consensus       110 ~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~~~G  189 (776)
                      +|+.+++||+||++|||||+||||||+||+++++||+||||++|++|++++||+.|++||+|||||||+++||||+ ++|
T Consensus       142 ~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~~~~EslirQl~~G~~~~~~~FG~~~~~~W~pD~FG~s~~lPqil~-~~G  220 (1045)
T 3bvx_A          142 GENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYILQ-KSG  220 (1045)
T ss_dssp             CHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCSSSBCTHHHHHHH-TTT
T ss_pred             CHHHHHHHHHHHhCCCEEEECCccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCceEEcCCCCCccHHHHHHHH-HcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             CcEEEEeecchhhhhhhccCCceeEEEEcCCCCCCCCeeEEeecC-CCCCCC------C----CCCcccCCC---CCCCC
Q 004057          190 FDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFP-VHYSPP------S----GFHFELTDD---FDPVQ  255 (776)
Q Consensus       190 ~~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~-~~Y~~~------~----~~~~~~~~~---~~~~~  255 (776)
                      |++++++|++|++++.++..++++|+|+|++....||+||||++| .+|+.|      .    .|+|+...+   .|||.
T Consensus       221 i~~~~~~R~~~~~~~~~~~~k~~eF~W~~~w~~~dGs~Ilt~~~p~~~Y~~~~~~gp~~~~c~~fdf~~l~~~~~~~~~~  300 (1045)
T 3bvx_A          221 FKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWK  300 (1045)
T ss_dssp             CCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEEECCSSCSSGGGTSSSCHHHHGGGCGGGSSTTSCCCTTS
T ss_pred             CCeEEEecccccccccccccCCceEEEeCCCCCCCCCeEEEEeccccccCcccccCCCccccccccccccccccccCccc
Confidence            999999999999999998888999999954333339999999999 467642      1    355544322   46776


Q ss_pred             CCC-CCccccHHHHHHHHHHHHHHhcccCCCCeeEEeccCCccCCchhhH---HHHHHHHHHHHhcCC--ceeEEEcChH
Q 004057          256 DNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESW---FKQMDKLIHYVNKGG--RVNALYSTPS  329 (776)
Q Consensus       256 ~~~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~~il~~~G~Df~~~~a~~~---~~~~~~li~~~n~~~--~~~i~~sT~~  329 (776)
                      ++| .+.++|++++++.+++++++++..|+++++|+|+|+||+|.++..|   +++|+++|+++|+.+  .++++|||++
T Consensus       301 ~~p~~~~~~nv~~r~~~~~~~~~~~~~~~~t~~~l~~~G~d~~~~~~~~~~~~~~n~~~li~~in~~~~~~~~v~~sT~~  380 (1045)
T 3bvx_A          301 VPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQ  380 (1045)
T ss_dssp             CCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHHHHHHHHHHHHHHHHHHCGGGCEEEEECCHH
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHhhcccCCCeEEEEecCCCCCcchhhhHHHHHHHHHHHHHHhhCCCCCceEEECCHH
Confidence            555 4567899999999999999888889999999999999999997655   899999999999764  5899999999


Q ss_pred             HHHHHHHhCC----CCCCCccCCcccccccCCCcccceeecchhhHHHHHHHHHHHHHHHHHHHhhCC---CCCCCchHH
Q 004057          330 LYTEAKNAAN----GPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGK---KSPGPTTSA  402 (776)
Q Consensus       330 ~yf~~~~~~~----~~~p~~~gD~~py~~~~~~~wtG~ytSr~~~K~~~R~~e~~L~~ae~l~~l~~~---~~~~~~~~~  402 (776)
                      +||+++++..    ..||+++||||||+++.++||+|||||||.+|+++|++|++|++||+|++++..   .++...+++
T Consensus       381 ~yf~~l~~~~~~~~~~lp~~~Ge~~~~~~~~~~yw~G~yTSr~~~K~~nR~~e~~L~~aE~l~ala~~~~~~~~~~~L~~  460 (1045)
T 3bvx_A          381 EYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQ  460 (1045)
T ss_dssp             HHHHHHHHHHHTTSCCCCEEESCBCSCEEETTEECCGGGTSSHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGCHHHHHHH
T ss_pred             HHHHHHHhhcccccccCcccCCcccccccCCcccccceecccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence            9999998753    369999999999999989999999999999999999999999999999998753   456677899


Q ss_pred             HHHHHHhhccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC---CCccccCccccccCCC
Q 004057          403 LGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPA---STFSQCPLLNISYCPP  479 (776)
Q Consensus       403 ~w~~l~~~qhHD~ItGts~~~V~~d~~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~ln~s~~~~  479 (776)
                      +|++|+++||||+||||++++|++||.+||.+|.+.++.+++.+++.|+..... .+..++   ..++.|.+++.+.||.
T Consensus       461 ~wk~lll~QhHD~i~Gts~~~V~~d~~~rl~~a~~~~~~l~~~al~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  539 (1045)
T 3bvx_A          461 ARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSI-YSPDFSFSYFTLDDSRWPGSGVEDS  539 (1045)
T ss_dssp             HHHHHHHHTBTTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCTTT-CCCCTTSCSEEEECSSSSCTTTCCC
T ss_pred             HHHHHhccccccCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccccccccccchhhhcccccccccc
Confidence            999999999999999999999999999999999999999999999999853221 111111   1223455566677765


Q ss_pred             CCC-CCCCCC---ceEEEEEcCCCceeeEEEEEEEcCCcEEEEcCCCCEEeEEEEeccccccccccchhhhccCCCCCCC
Q 004057          480 TEK-GIPEGK---NLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRV  555 (776)
Q Consensus       480 ~~~-~~~~~~---~~~v~vfNpl~~~r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (776)
                      ... .+ .++   ...|+|||||+|+|+++|+++|..+.+.|.|.+|++|++|+++.+.....+....+     ......
T Consensus       540 ~~~i~~-~~~~~~~~~vvvfN~L~~~r~~~V~v~v~~~~~~V~D~~G~~v~~Qi~~~~~~~~~~~~~~~-----~~~~~~  613 (1045)
T 3bvx_A          540 RTTIIL-GEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTI-----HPQGST  613 (1045)
T ss_dssp             CCEECC-BTTTBSEEEEEEEECSSSCEEEEEEEEESCSCEEEEETTCCEECEEEEEEEEEEEETTTTEE-----EEEEEE
T ss_pred             cccccc-cccccCCceEEEEcCCCcceeeEEEEEeccCceEEEcCCCCEEeEEEeeccccccccccccc-----cccCCC
Confidence            421 01 122   56899999999999999999999999999999999999999987543221100000     000122


Q ss_pred             CeEEEEEEEeeCCCceEEEEEEecCCccc-cccccc----------ccc-CCCCCCceEecCCeE------EEEEECCCC
Q 004057          556 PRYWLLFQVTVPPLGWNTYFISRAAGKVK-RRKGFF----------LAA-DSPQDKTVEVGPGNL------KMSFSRTTG  617 (776)
Q Consensus       556 ~~~~l~f~~~vPplG~~~~~i~~~~~~~~-~~~~~~----------~~~-~~~~~~~~~leN~~~------~v~~~~~~G  617 (776)
                      ..|+|+|.++||||||++|.|........ ...+.+          ... .....+...|||++|      +|+||+ +|
T Consensus       614 ~~~~L~f~a~vP~lG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~leN~~~~~~~~~~v~fd~-~G  692 (1045)
T 3bvx_A          614 TKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSE-QG  692 (1045)
T ss_dssp             EEEEEEEEEEECTTEEEEEEEEECSSCCTTEEECEEEEECSSCCCCCCTTCSSCCEEECCCCEEEECTTSCEEEECT-TS
T ss_pred             CcEEEEEEeccCCceeEEEEEEecCCccccccccceeecccccccccccccccCCCceeecccccccccccEEEECC-CC
Confidence            45789999999999999999987654322 100000          000 001334578999999      999995 99


Q ss_pred             ceEEEEecCCceEEeeeeeEEEEeeccCCCCccceeEecCCCcceecCCCccEEEEecCcEEEEEEEecceEEEEEEEec
Q 004057          618 QLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYI  697 (776)
Q Consensus       618 ~i~sl~dk~~g~~~~~~~~~~~Y~~~~~~~~~gaY~f~p~~~~~~~~~~~~~i~i~~Gpl~~~i~~~~~~~i~q~irLy~  697 (776)
                      .|+||+||++|+++.+.+.|.+|.+...++.||||+|+|++...........+++++|||+++|++.+ .+++|++||  
T Consensus       693 ~L~si~dk~~g~e~~~~~~f~~Y~~~~~~~~sgaY~F~P~~~~~~~~~~~~~~~v~~Gpl~~ev~~~~-~~i~q~irL--  769 (1045)
T 3bvx_A          693 LLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGL-PSVVHQTIM--  769 (1045)
T ss_dssp             CEEEEECSTTSCCEEEEEEEEEECBCSSSCCCCSSCCCBSSSCEECCCCSCCEEEEECSSCEEEEEEE-TTEEEEEEE--
T ss_pred             cEEEEEEcCCCeEEEEeeEEEEEecccCCCCCcceEecCCCCCcccccCCceEEEEeCCeEEEEEEEE-eeEEEEEEE--
Confidence            99999999999999999999999864445799999999988742222235577889999999999999 469999999  


Q ss_pred             CCCceEEEEEEccccccCCCCcEEEEEEeeeccCCceEEEccCCCceeeeccccccCcccccccccccccccccccccC
Q 004057          698 DKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI  776 (776)
Q Consensus       698 ~~~~ie~~~~V~~~~~~~~~~~el~~~f~t~i~s~~~~ytDsnG~~~ikR~~~~~~~w~~~~~~pi~~NyYPv~s~~~i  776 (776)
                      ++++|||+++|+|.+   ..||||+++|+|+|++++.||||+|||+++||+++.        +.|+++|||||+++|||
T Consensus       770 ~~~~ieie~~Vd~~~---~~~~el~~rf~t~i~s~~~fyTD~nG~~~ikR~~~~--------~~p~~~NyYPv~s~~~i  837 (1045)
T 3bvx_A          770 RGGAPEIRNLVDIGS---LDNTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLD--------KLPLQANYYPIPSGMFI  837 (1045)
T ss_dssp             SSSSCEEEEEECCTT---CTTEEEEEEEEECCCCTTEEEEEETTTEEEEEECCT--------TSCGGGGCEEESSEEEE
T ss_pred             CCeeEEEEEEEecCC---CCCeEEEEEeecccCCCCeEEEecCCceeEEcCCCC--------CCCcccceEEeeeeEEE
Confidence            788999999998863   358999999999999988999999999999999874        48899999999999986
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Back     alignment and structure
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Back     alignment and structure
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Back     alignment and structure
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6 Back     alignment and structure
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6 Back     alignment and structure
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1 Back     alignment and structure
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* Back     alignment and structure
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A Back     alignment and structure
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A* Back     alignment and structure
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4 Back     alignment and structure
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis} Back     alignment and structure
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6 Back     alignment and structure
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A Back     alignment and structure
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} Back     alignment and structure
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 Back     alignment and structure
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans} Back     alignment and structure
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} Back     alignment and structure
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 Back     alignment and structure
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 Back     alignment and structure
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Back     alignment and structure
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 776
g1o7d.3330 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-manno 1e-116
d3bvua3381 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fru 1e-107
g1o7d.2 490 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosoma 3e-76
d3bvua2 522 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II { 2e-66
d1k1xa3310 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-te 2e-43
d3bvua1111 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fr 3e-27
g1o7d.195 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mann 2e-24
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 381 Back     information, alignment and structure
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 522 Back     information, alignment and structure
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 310 Back     information, alignment and structure
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query776
d3bvua3381 Golgi alpha-mannosidase II {Fruit fly (Drosophila 100.0
g1o7d.3330 Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax 100.0
g1o7d.2 490 Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax 100.0
d3bvua2 522 Golgi alpha-mannosidase II {Fruit fly (Drosophila 100.0
d1k1xa3310 4-alpha-glucanotransferase, N-terminal domain {Arc 99.97
d3bvua1111 Golgi alpha-mannosidase II {Fruit fly (Drosophila 99.93
g1o7d.195 Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax 99.93
d2b5dx2404 Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 98.67
d1ufaa2412 Hypothetical protein TT1467, N-terminal domain {Th 98.24
d1z7aa1301 Hypothetical protein PA1517 {Pseudomonas aeruginos 95.43
d2cc0a1192 Acetyl-xylan esterase {Streptomyces lividans [TaxI 91.95
d1ny1a_235 Probable polysaccharide deacetylase PdaA {Bacillus 91.7
d2c1ia1196 Peptidoglycan GlcNAc deacetylase C-terminal domain 91.1
d2j13a1235 Putative polysaccharide deacetylase BA0424 {Bacill 90.34
d2iw0a1220 Chitin deacetylase {Bean anthracnose fungus (Colle 82.93
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=9e-77  Score=638.55  Aligned_cols=324  Identities=31%  Similarity=0.595  Sum_probs=295.2

Q ss_pred             cCceeeeecCCCCccCCeeEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHH
Q 004057           23 NGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFF  102 (776)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~  102 (776)
                      +..-.|+|+.+.....+|++||||||||+|+||++|+++|+.        ..+++||++++++|+++|++||+|+|++++
T Consensus        33 ~q~~~~~~~~~~~~~~~kl~VhlV~HsH~D~gWl~t~~e~~~--------~~~~~il~~~l~~l~~~p~~~F~~~~~~~~  104 (381)
T d3bvua3          33 KQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRHLHDNPEMKFIWAEISYF  104 (381)
T ss_dssp             TTSCCCCCCGGGCBTTBCEEEEEEEEEECCSSSSSCHHHHHH--------HTHHHHHHHHHHHHHHCTTCCEEECCHHHH
T ss_pred             cCCcceeechhhcCcCCCcEEEEeCCCCCChhhcCcHHHHHH--------HHHHHHHHHHHHHHHHCCCCEEEEechHHH
Confidence            344456798888878899999999999999999999999986        468899999999999999999999999999


Q ss_pred             HHHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHH
Q 004057          103 HRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAY  182 (776)
Q Consensus       103 ~~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~  182 (776)
                      .+||++++|+.+++||+||++|||||+||||||+||+++++|++||||++|++|++++||+.|++||+|||||||++||+
T Consensus       105 ~~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~lp~  184 (381)
T d3bvua3         105 ARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPY  184 (381)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECSSSSBCTHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHHHCCCEEEeCCeeecccccCCCHHHHHHHHHHHHHHHHHHcCCCCceEEeeCCCCccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCcEEEEeecchhhhhhhccCCceeEEEEcCCCCCCCCeeEEeecCC-CCCCCCC----------CCcccC---
Q 004057          183 LLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPV-HYSPPSG----------FHFELT---  248 (776)
Q Consensus       183 il~~~~G~~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~-~Y~~~~~----------~~~~~~---  248 (776)
                      ||+ ++||++++++|++|++++.++..+.+||+|++.+..+.|++||||++|. +|+.|+.          |+|.+.   
T Consensus       185 il~-~~Gi~~~~~~R~~~~~~~~~~~~k~lef~w~~~W~~~~~s~ilth~~~~~~Y~~p~~~~~d~~~~~~f~f~~~~~~  263 (381)
T d3bvua3         185 ILQ-KSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSF  263 (381)
T ss_dssp             HHH-TTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEEECCSSCSSGGGTSSSCHHHHGGGCGGGSSTT
T ss_pred             HHH-hcCCCeEEEEecchhhhcccccccccceeecccccCCCCCceeEecccccccCCcccCCCCccccccccccccccc
Confidence            998 9999999999999999999999999999999887666699999999987 4777653          344332   


Q ss_pred             CCCCCCCCCC-CCccccHHHHHHHHHHHHHHhcccCCCCeeEEeccCCccCCchhhH---HHHHHHHHHHHhcCC--cee
Q 004057          249 DDFDPVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESW---FKQMDKLIHYVNKGG--RVN  322 (776)
Q Consensus       249 ~~~~~~~~~~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~~il~~~G~Df~~~~a~~~---~~~~~~li~~~n~~~--~~~  322 (776)
                      ...+|+..+| .++++|++++++.|++++++++..|+|+++|+|+|+||+|.++..|   |+||++||+++|+..  .++
T Consensus       264 ~~~~p~~~~~~~i~~~nv~~r~~~~~~~~~~~a~~~~tn~vL~p~G~Df~y~~a~~w~~~~~n~~kli~~iN~~~~~~v~  343 (381)
T d3bvua3         264 GLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQ  343 (381)
T ss_dssp             SCCCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHHHHHHHHHHHHHHHHHHCGGGCEE
T ss_pred             CCCCCcccCCcccchhHHHHHHHHHHHHHHHHhhccCCCeEEEccccCCCCCccchHHHHHHhHHHHHHHHHhCCCCCeE
Confidence            2345666554 6888999999999999999999999999999999999999999876   999999999999763  689


Q ss_pred             EEEcChHHHHHHHHhC----CCCCCCccCCccccccc
Q 004057          323 ALYSTPSLYTEAKNAA----NGPWPLKTDDYFPYADR  355 (776)
Q Consensus       323 i~~sT~~~yf~~~~~~----~~~~p~~~gD~~py~~~  355 (776)
                      ++||||++||++|++.    +.++|+++||||||||+
T Consensus       344 i~~ST~~~Yf~al~~~~~~~~~~~P~~~gDFfpYad~  380 (381)
T d3bvua3         344 AQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADR  380 (381)
T ss_dssp             EEECCHHHHHHHHHHHHHTTSCCCCEEESCBCSCBSS
T ss_pred             EEECCHHHHHHHHHHHHhhcCCCCCCcCCCCcCCCCC
Confidence            9999999999999864    46899999999999985
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]} Back     information, alignment and structure
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} Back     information, alignment and structure