Citrus Sinensis ID: 004067
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 776 | 2.2.26 [Sep-21-2011] | |||||||
| Q80YA7 | 892 | Dipeptidyl peptidase 8 OS | yes | no | 0.832 | 0.724 | 0.315 | 6e-81 | |
| Q6V1X1 | 898 | Dipeptidyl peptidase 8 OS | yes | no | 0.837 | 0.723 | 0.305 | 5e-80 | |
| Q8BVG4 | 862 | Dipeptidyl peptidase 9 OS | no | no | 0.845 | 0.761 | 0.304 | 3e-78 | |
| Q86TI2 | 863 | Dipeptidyl peptidase 9 OS | no | no | 0.841 | 0.756 | 0.301 | 4e-78 | |
| B2RJX3 | 732 | Prolyl tripeptidyl peptid | no | no | 0.726 | 0.770 | 0.293 | 1e-62 | |
| Q7MUW6 | 732 | Prolyl tripeptidyl peptid | no | no | 0.726 | 0.770 | 0.293 | 3e-62 | |
| A1CHP1 | 768 | Probable dipeptidyl pepti | N/A | no | 0.762 | 0.770 | 0.255 | 1e-48 | |
| A2QEK7 | 901 | Probable dipeptidyl-amino | yes | no | 0.768 | 0.661 | 0.264 | 1e-47 | |
| B6QVW4 | 899 | Probable dipeptidyl-amino | N/A | no | 0.768 | 0.662 | 0.253 | 2e-47 | |
| Q0CXB1 | 914 | Probable dipeptidyl-amino | N/A | no | 0.764 | 0.648 | 0.255 | 5e-47 |
| >sp|Q80YA7|DPP8_MOUSE Dipeptidyl peptidase 8 OS=Mus musculus GN=Dpp8 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 302 bits (774), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 244/773 (31%), Positives = 358/773 (46%), Gaps = 127/773 (16%)
Query: 104 LDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYF------QDLSC 157
LD S EE+L RER R +G+ Y++ S + GIY +
Sbjct: 137 LDYGMYSREEELLRERKRIGTVGIAAYDYHPGSG---TFLFQAGSGIYHIKDGGPHGFTQ 193
Query: 158 SKPELKLSSSSCSPV-IDPHLS-SDGTMIAFVRDCELHVLNLLINEQRQLTHGANG---- 211
L +SC + +DP L +D IAF+ ++ + NL+ E+R++T+ N
Sbjct: 194 QPLRPNLVETSCPNIRMDPKLCPADPDWIAFIHSNDIWISNLVTREERRITYVHNELANM 253
Query: 212 --NTVTHGLAEYIAQEEMDRKTGYWWSLDSKF---------IAFTQVDSSEIPRFRIMHQ 260
+ + G+A ++ QEE DR +GYWW ++ I + + D SE+ I+H
Sbjct: 254 EEDPRSAGVATFVLQEEFDRYSGYWWCPQAERTPSGGKILRILYEENDESEV---EIIHV 310
Query: 261 GKSSVGSEAQEDHAYPFAGASNVKVRLG----VVSAAGGPVSWMDLQCGGTDQNYDE--E 314
+ + + YP G +N KV VV AAGG + +D + + E E
Sbjct: 311 TSPMLETRRADSFRYPKTGTANPKVTFKMSEIVVDAAGGIIDVIDKELVQPFEILFEGVE 370
Query: 315 YLARVNWM-HGNILTAQVLNRSQTKLKVLKF----------DIKTGQRKV---------- 353
Y+AR W G + +L+RSQT L+++ D QR +
Sbjct: 371 YIARAGWTPEGKHAWSILLDRSQTHLQIVLISPELFIPVEDDAMDRQRLIESVPDSVTPL 430
Query: 354 -ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLY----------LHDIN 401
I E D W+N+HD F + + FI+ASE KTGFRHLY +
Sbjct: 431 IIYEETTDIWINIHDIFHVFPQ-THEDEIEFIFASECKTGFRHLYKITSILKESKYKRSS 489
Query: 402 GTCLGP------------ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCA 445
G P IT G+W V G V+EA VYF GT D PLE HLY
Sbjct: 490 GGLPAPSDFKCPIKEEITITSGEWEVLGRHGSNIWVDEARKLVYFEGTKDSPLEHHLYVT 549
Query: 446 KLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ------- 498
Y + V+LT+ H L + F+ + + +P + L L
Sbjct: 550 S-YANPGEV----VRLTDRGYSHSCCLSRHCDFFISKYSNQKNPHCVSLYKLSSPEDDPV 604
Query: 499 -----------DGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDES 547
D + LP Y PP+I ++ G LYG LYKP +
Sbjct: 605 HKTKEFWATILDSAGPLPDY--------------TPPEIFSFESTTGFTLYGMLYKPHDL 650
Query: 548 RYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607
+ G Y T++ +YGGP VQLV + + R L S G +V +DNRG+ RGLKFE
Sbjct: 651 QPG-KKYPTVLFIYGGPQVQLVNNRFKGVKYFRLNTLASLGYVVVVIDNRGSCHRGLKFE 709
Query: 608 ASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666
+ K+ G+I+ +DQ+ G ++L Q + +G++GWSYGGYLS + L + D+F+ A
Sbjct: 710 GAFKYKMGQIEIDDQVEGLQYLASQYDFIDLDRVGIHGWSYGGYLSLMALMQRSDIFRVA 769
Query: 667 VSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDEN 723
++GAPVT W YDT YTE+YMG P ++ GY SV K +LLL+HG +DEN
Sbjct: 770 IAGAPVTLWIFYDTGYTERYMGHPDQNEQGYYLGSVAMQAEKFPSEPNRLLLLHGFLDEN 829
Query: 724 VHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
VHF HT+ L++ LV A KPY++ I+P ERH R + E + +++ L
Sbjct: 830 VHFAHTSILLSFLVRAGKPYDLQIYPQERHSIRVPESGEHYELHLLHYLQENL 882
|
Dipeptidyl peptidase that cleaves off N-terminal dipeptides from proteins having a Pro or Ala residue at position 2. May play a role in T-cell activation and immune function. Mus musculus (taxid: 10090) EC: 3EC: .EC: 4EC: .EC: 1EC: 4EC: .EC: 5 |
| >sp|Q6V1X1|DPP8_HUMAN Dipeptidyl peptidase 8 OS=Homo sapiens GN=DPP8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (766), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 235/769 (30%), Positives = 356/769 (46%), Gaps = 119/769 (15%)
Query: 104 LDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYF------QDLSC 157
LD S EE+L RER R +G+ Y++ + S + GIY Q +
Sbjct: 143 LDYGMYSREEELLRERKRIGTVGIASYDYHQGSG---TFLFQAGSGIYHVKDGGPQGFTQ 199
Query: 158 SKPELKLSSSSCSPV-IDPHLS-SDGTMIAFVRDCELHVLNLLINEQRQLTHGANG---- 211
L +SC + +DP L +D IAF+ ++ + N++ E+R+LT+ N
Sbjct: 200 QPLRPNLVETSCPNIRMDPKLCPADPDWIAFIHSNDIWISNIVTREERRLTYVHNELANM 259
Query: 212 --NTVTHGLAEYIAQEEMDRKTGYWWSLDSKF---------IAFTQVDSSEIPRFRIMHQ 260
+ + G+A ++ QEE DR +GYWW ++ I + + D SE+ I+H
Sbjct: 260 EEDARSAGVATFVLQEEFDRYSGYWWCPKAETTPSGGKILRILYEENDESEV---EIIHV 316
Query: 261 GKSSVGSEAQEDHAYPFAGASNVKVRLGV----VSAAGGPVSWMDLQCGGTDQNYDE--E 314
+ + + YP G +N KV + + A G + +D + + E E
Sbjct: 317 TSPMLETRRADSFRYPKTGTANPKVTFKMSEIMIDAEGRIIDVIDKELIQPFEILFEGVE 376
Query: 315 YLARVNWM-HGNILTAQVLNRSQTKLKVLKF----------DIKTGQRKV---------- 353
Y+AR W G + +L+RSQT+L+++ D+ QR +
Sbjct: 377 YIARAGWTPEGKYAWSILLDRSQTRLQIVLISPELFIPVEDDVMERQRLIESVPDSVTPL 436
Query: 354 -ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLY----------LHDIN 401
I E D W+N+HD F + + FI+ASE KTGFRHLY +
Sbjct: 437 IIYEETTDIWINIHDIFHVFPQSHEE-EIEFIFASECKTGFRHLYKITSILKESKYKRSS 495
Query: 402 GTCLGP------------ITEGDWMV----EQIVGVNEASGQVYFTGTLDGPLESHLYCA 445
G P IT G+W V + V+E VYF GT D PLE HLY
Sbjct: 496 GGLPAPSDFKCPIKEEIAITSGEWEVLGRHGSNIQVDEVRRLVYFEGTKDSPLEHHLYVV 555
Query: 446 KLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505
T +LT+ H + + F+ + + +P + L L
Sbjct: 556 SYVNPGEVT-----RLTDRGYSHSCCISQHCDFFISKYSNQKNPHCVSLYKLS------- 603
Query: 506 LYEQPLTVPRIKRLQL--------------EPPDIVQIQANDGTVLYGALYKPDESRYGP 551
P P K + PP+I ++ G LYG LYKP + + G
Sbjct: 604 ---SPEDDPTCKTKEFWATILDSAGPLPDYTPPEIFSFESTTGFTLYGMLYKPHDLQPGK 660
Query: 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611
Y T++ +YGGP VQLV + + R L S G +V +DNRG+ RGLKFE + K
Sbjct: 661 K-YPTVLFIYGGPQVQLVNNRFKGVKYFRLNTLASLGYVVVVIDNRGSCHRGLKFEGAFK 719
Query: 612 HNCGRIDAEDQLTGAEWLI-KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA 670
+ G+I+ +DQ+ G ++L + + +G++GWSYGGYLS + L + D+F+ A++GA
Sbjct: 720 YKMGQIEIDDQVEGLQYLASRYDFIDLDRVGIHGWSYGGYLSLMALMQRSDIFRVAIAGA 779
Query: 671 PVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHFR 727
PVT W YDT YTE+YMG P ++ GY SV K +LLL+HG +DENVHF
Sbjct: 780 PVTLWIFYDTGYTERYMGHPDQNEQGYYLGSVAMQAEKFPSEPNRLLLLHGFLDENVHFA 839
Query: 728 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
HT+ L++ LV A KPY++ I+P ERH R + E + +++ L
Sbjct: 840 HTSILLSFLVRAGKPYDLQIYPQERHSIRVPESGEHYELHLLHYLQENL 888
|
Dipeptidyl peptidase that cleaves off N-terminal dipeptides from proteins having a Pro or Ala residue at position 2. May play a role in T-cell activation and immune function. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|Q8BVG4|DPP9_MOUSE Dipeptidyl peptidase 9 OS=Mus musculus GN=Dpp9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 229/753 (30%), Positives = 351/753 (46%), Gaps = 97/753 (12%)
Query: 110 SPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQD--------LSCSKPE 161
S EE+L RER R G+T Y++ S+ + + + ++ +S KP
Sbjct: 121 SREEELLRERKRLGVFGITSYDF---HSESGLFLFQASNSLFHCRDGGKNGFMVSPMKP- 176
Query: 162 LKLSSSSCSPVIDPHLS-SDGTMIAFVRDCELHVLNLLINEQRQLTHGANG------NTV 214
L++ + P +DP + +D +F+ + +L V N+ E+R+LT G N
Sbjct: 177 LEIKTQCSGPRMDPKICPADPAFFSFINNSDLWVANIETGEERRLTFCHQGSAGVLDNPK 236
Query: 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEI-------PRFRIMHQGKSSVGS 267
+ G+A ++ QEE DR TG WW + + + + I ++H ++
Sbjct: 237 SAGVATFVIQEEFDRFTGCWWCPTASWEGSEGLKTLRILYEEVDESEVEVIHVPSPALEE 296
Query: 268 EAQEDHAYPFAGASNVKVRLGVVSAA----GGPVSWMDLQCGGTDQNY--DEEYLARVNW 321
+ + YP G+ N K+ L + G VS + + + EY+AR W
Sbjct: 297 RKTDSYRYPRTGSKNPKIALKLAELQTDHQGKIVSSCEKELVQPFSSLFPKVEYIARAGW 356
Query: 322 MH-GNILTAQVLNRSQTKLKVLKFDI---------------------KTGQRKVILVEEL 359
G A L+R Q +L+++ K Q VI E
Sbjct: 357 TRDGKYAWAMFLDRPQQRLQLVLLPPALFIPAVESEAQRQAAARAVPKNVQPFVIYEEVT 416
Query: 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLY-------LHDINGT-CLGP--- 407
+ W+N+HD F P + + F+ A+E KTGF HLY D + T L P
Sbjct: 417 NVWINVHDIFHPFPQAEGQQDFCFLRANECKTGFCHLYRVTVELKTKDYDWTEPLSPTED 476
Query: 408 -----------ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 452
+T G+W V G VNE + VYF GT D PLE HLY
Sbjct: 477 EFKCPIKEEVALTSGEWEVLSRHGSKIWVNEQTKLVYFQGTKDTPLEHHLYVVSY----- 531
Query: 453 HTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT 512
+ V+LT H + + FV + S+ +PP + + L G PL++QP
Sbjct: 532 ESAGEIVRLTTLGFSHSCSMSQSFDMFVSHYSSVSTPPCVHVYKL-SGPDDDPLHKQPRF 590
Query: 513 VPRIKRLQLEPPD-----IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ 567
+ PPD I LYG +YKP + G + T++ VYGGP VQ
Sbjct: 591 WASMMEAANCPPDYVPPEIFHFHTRADVQLYGMIYKPHTLQPGRK-HPTVLFVYGGPQVQ 649
Query: 568 LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 627
LV +S+ +R L S G V +D RG+ +RGL FE ++K+ G+++ EDQ+ G +
Sbjct: 650 LVNNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLHFEGALKNQMGQVEIEDQVEGLQ 709
Query: 628 WLI-KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY 686
++ K G + + ++GWSYGG+LS + L P VF+ A++GAPVT W YDT YTE+Y
Sbjct: 710 YVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERY 769
Query: 687 MGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHFRHTARLINALVAARKPY 743
M +P + GYE SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY
Sbjct: 770 MDVPENNQQGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPY 829
Query: 744 EILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
++ I+P+ERH R + E + F++ L
Sbjct: 830 QLQIYPNERHSIRCRESGEHYEVTLLHFLQEHL 862
|
Dipeptidyl peptidase that cleaves off N-terminal dipeptides from proteins having a Pro or Ala residue at position 2. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|Q86TI2|DPP9_HUMAN Dipeptidyl peptidase 9 OS=Homo sapiens GN=DPP9 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 228/756 (30%), Positives = 354/756 (46%), Gaps = 103/756 (13%)
Query: 110 SPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYF-QD-------LSCSKPE 161
S EE+L RER R G+T Y++ S+ + + + ++ +D +S KP
Sbjct: 122 SREEELLRERKRLGVFGITSYDF---HSESGLFLFQASNSLFHCRDGGKNGFMVSPMKP- 177
Query: 162 LKLSSSSCSPVIDPHLS-SDGTMIAFVRDCELHVLNLLINEQRQLTHGANG------NTV 214
L++ + P +DP + +D +F+ + +L V N+ E+R+LT G +
Sbjct: 178 LEIKTQCSGPRMDPKICPADPAFFSFINNSDLWVANIETGEERRLTFCHQGLSNVLDDPK 237
Query: 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEI-------PRFRIMHQGKSSVGS 267
+ G+A ++ QEE DR TGYWW + + + + I ++H ++
Sbjct: 238 SAGVATFVIQEEFDRFTGYWWCPTASWEGSEGLKTLRILYEEVDESEVEVIHVPSPALEE 297
Query: 268 EAQEDHAYPFAGASNVKVRLGVVS----AAGGPVSWMDLQCGGTDQNY--DEEYLARVNW 321
+ + YP G+ N K+ L + + G VS + + + EY+AR W
Sbjct: 298 RKTDSYRYPRTGSKNPKIALKLAEFQTDSQGKIVSTQEKELVQPFSSLFPKVEYIARAGW 357
Query: 322 MH-GNILTAQVLNRSQTKLKVL---------------------KFDIKTGQRKVILVEEL 359
G A L+R Q L+++ + + Q V+ E
Sbjct: 358 TRDGKYAWAMFLDRPQQWLQLVLLPPALFIPSTENEEQRLASARAVPRNVQPYVVYEEVT 417
Query: 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLG------------ 406
+ W+N+HD F P + + F+ A+E KTGF HLY G
Sbjct: 418 NVWINVHDIFYPFPQSEGEDELCFLRANECKTGFCHLYKVTAVLKSQGYDWSEPFSPGED 477
Query: 407 ----------PITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 452
+T G+W V G VNE + VYF GT D PLE HLY
Sbjct: 478 EFKCPIKEEIALTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVV------- 530
Query: 453 HTLEAP---VKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 509
+ EA V+LT H + N FV + S+ +PP + + L G PL++Q
Sbjct: 531 -SYEAAGEIVRLTTPGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKL-SGPDDDPLHKQ 588
Query: 510 PLTVPRIKRLQLEPPD-----IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGP 564
P + PPD I LYG +YKP + G + T++ VYGGP
Sbjct: 589 PRFWASMMEAASCPPDYVPPEIFHFHTRSDVRLYGMIYKPHALQPGKK-HPTVLFVYGGP 647
Query: 565 CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT 624
VQLV +S+ +R L S G V +D RG+ +RGL+FE ++K+ G+++ EDQ+
Sbjct: 648 QVQLVNNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVE 707
Query: 625 GAEWLI-KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 683
G +++ K G + + ++GWSYGG+LS + L P VF+ A++GAPVT W YDT YT
Sbjct: 708 GLQFVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYT 767
Query: 684 EKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHFRHTARLINALVAAR 740
E+YM +P + GYE SV HV K+ +LL++HG +DENVHF HT L++ L+ A
Sbjct: 768 ERYMDVPENNQHGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAG 827
Query: 741 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
KPY++ I+P+ERH R + E + F++ L
Sbjct: 828 KPYQLQIYPNERHSIRCPESGEHYEVTLLHFLQEYL 863
|
Dipeptidyl peptidase that cleaves off N-terminal dipeptides from proteins having a Pro or Ala residue at position 2. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|B2RJX3|PTP_PORG3 Prolyl tripeptidyl peptidase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ptpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 178/607 (29%), Positives = 284/607 (46%), Gaps = 43/607 (7%)
Query: 177 LSSDGTMIAFVRDCELHVL---NLLINEQRQLTHGANG-NTVTHGLAEYIAQEEMDRKTG 232
S G +A+VR+ L++ L R + +G T+ +G A + Q E + G
Sbjct: 154 FSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGAETLVYGQA--VHQREFGIEKG 211
Query: 233 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292
+WS +AF ++D S + I+ S+ YP AG + V +G+
Sbjct: 212 TFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL---YYPMAGTPSHHVTVGIYHL 268
Query: 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQR 351
A G + LQ G E++L ++W NIL +NR+Q + KV +D +TG+
Sbjct: 269 ATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF 322
Query: 352 -KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE 410
+ + VE +V T L + FIW S + G+ HLYL+D G + +T+
Sbjct: 323 VRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQVTK 378
Query: 411 GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVA 470
G+W V G + ++YF T PLE H YC + LT G H
Sbjct: 379 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESGMHRT 432
Query: 471 VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPPDIV 527
L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 433 QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSYTLLEAKNPDTGYAMPEIR--------TG 484
Query: 528 QIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 585
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V Y+
Sbjct: 485 TIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMA 542
Query: 586 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 645
KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q IG++GW
Sbjct: 543 QKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGW 602
Query: 646 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 705
SYGG+++ + DVF+ V+G PV W+ Y+ Y E+Y P E+P GY+ ++++
Sbjct: 603 SYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQENPEGYDAANLLKR 662
Query: 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 765
+KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+++
Sbjct: 663 AGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRVHLY 721
Query: 766 ERIWEFI 772
E I +
Sbjct: 722 ETITRYF 728
|
Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position. Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) (taxid: 431947) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q7MUW6|PTP_PORGI Prolyl tripeptidyl peptidase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=ptpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 178/607 (29%), Positives = 284/607 (46%), Gaps = 43/607 (7%)
Query: 177 LSSDGTMIAFVRDCELHVL---NLLINEQRQLTHGANGN-TVTHGLAEYIAQEEMDRKTG 232
S G +A+VR+ L++ L R + +G T+ +G A + Q E + G
Sbjct: 154 FSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA--VHQREFGIEKG 211
Query: 233 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292
+WS +AF ++D S + I+ S+ YP AG + V +G+
Sbjct: 212 TFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL---YYPMAGTPSHHVTVGIYHL 268
Query: 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQR 351
A G + LQ G E++L ++W NIL +NR+Q + KV +D +TG+
Sbjct: 269 ATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF 322
Query: 352 -KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE 410
+ + VE +V T L + FIW S + G+ HLYL+D G + +T+
Sbjct: 323 VRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQVTK 378
Query: 411 GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVA 470
G+W V G + ++YF T PLE H YC + LT G H
Sbjct: 379 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESGMHRT 432
Query: 471 VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPPDIV 527
L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 433 QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIR--------TG 484
Query: 528 QIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 585
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V Y+
Sbjct: 485 TIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMA 542
Query: 586 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 645
KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q IG++GW
Sbjct: 543 QKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGW 602
Query: 646 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 705
SYGG+++ + DVF+ V+G PV W+ Y+ Y E+Y P E+P GY+ ++++
Sbjct: 603 SYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQENPEGYDAANLLKR 662
Query: 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 765
+KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+++
Sbjct: 663 AGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRVHLY 721
Query: 766 ERIWEFI 772
E I +
Sbjct: 722 ETITRYF 728
|
Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position. Porphyromonas gingivalis (strain ATCC BAA-308 / W83) (taxid: 242619) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 2 |
| >sp|A1CHP1|DPP4_ASPCL Probable dipeptidyl peptidase 4 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dpp4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 164/643 (25%), Positives = 290/643 (45%), Gaps = 51/643 (7%)
Query: 151 YFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGAN 210
Y QDL K L+S+ + + S G IAFVR ++V Q+T +
Sbjct: 127 YIQDLQSFKLA-PLASNQAGDIQYANWSPTGDAIAFVRANNVYVWT--AKSTTQITTDGS 183
Query: 211 GNTVTHGLAEYIAQEEM--DRKTGYWWSLDSKFIAFTQVDSSEIPRFRI---MHQGKSSV 265
+ + +G+ ++I +EE+ DR W+S D++++AF + + + +P FR+ M + +
Sbjct: 184 AD-LFNGVPDWIYEEEILGDRH-ALWFSPDAEYLAFLRFNETGVPTFRVPYYMDNEEVAP 241
Query: 266 GSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM--- 322
+ + YP +N V + ++S A G VS + ++ N + + V W+
Sbjct: 242 PYPRELELRYPKVSQTNPTVEVRLLSRATGEVSSVSIKAF----NATDLVIGEVAWLTET 297
Query: 323 HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSG 381
H + + NR Q + KV+ D+ + + K I + D W++ T + + +
Sbjct: 298 HSQV-AVKAFNRVQDQQKVVTVDVLSLKTKTISERDGTDGWLDNALSITYIGQIGDSKAE 356
Query: 382 GFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441
+I S+++G+ HL+L + G +T+G+W V I+ +++ VY+ T E H
Sbjct: 357 YYIDISDESGWAHLWLFPVAGGRPMALTKGEWEVTAILSIDKQRQLVYYLSTQHHSTERH 416
Query: 442 LYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRIL-------- 493
+Y W P+ A ++ + D P + L
Sbjct: 417 VYSVS----WKTFTATPLVDDTVAAVWSASFSSQGGYYILSYRGPDVPYQELYAINSTKP 472
Query: 494 LCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPP 553
LC++ + V + +Q T+P+I +L P G L + + S
Sbjct: 473 LCTITSNAAVYDVLKQ-YTLPKISYFELRLPS--------GETL-NVMQRLPVSFSPRKK 522
Query: 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK---GILVWKLDNRGTARRGLKFEASI 610
Y L + YGGP Q V +W + Y+ S + W +DNRGT +G +F +
Sbjct: 523 YPILFTPYGGPGAQEVSKAWQS--QTFKSYIASDPELEFVTWTVDNRGTGYKGRRFRGQV 580
Query: 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA 670
GR++A+DQ+ A+ K HI ++GWSYGGYL+ + VF V A
Sbjct: 581 AKQLGRLEAQDQVWAAQQAAKLPFIDAEHIAIWGWSYGGYLTGKVIETDSGVFSLGVLTA 640
Query: 671 PVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSV--MHHVHKMKGKLLLVHGMIDENVHFRH 728
PV+ W YD+ YTE+YM E+ GY S++ + ++G +L+ HG D+NVHF++
Sbjct: 641 PVSDWRFYDSMYTERYMKTLQENANGYNASAIWDVAGYKNVRGGVLIQHGTGDDNVHFQN 700
Query: 729 TARLINALVA---ARKPYEILIFPDERHMPRRHRDRIYMEERI 768
A L++ LV + ++ F D H R H +++ ++
Sbjct: 701 AAALVDRLVGEGVSPDKLQVQWFTDSDHGIRYHGGSVFLYRQL 743
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|A2QEK7|DAPB_ASPNC Probable dipeptidyl-aminopeptidase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dapB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 169/638 (26%), Positives = 281/638 (44%), Gaps = 42/638 (6%)
Query: 153 QDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGN 212
Q L S P+ ++ + SP D M+AFVRD L++ L E +T G
Sbjct: 247 QPLDPSNPDGRVQLAIWSPTSD--------MVAFVRDNNLYLRKLSSKEVVPITKDG-GA 297
Query: 213 TVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE--- 268
+ +G+ +++ +EE+ + WWS D K++AF + + + +P F + + G
Sbjct: 298 DLFYGIPDWVYEEEVFSGNSVTWWSGDGKYVAFLRTNETAVPEFPVQYYLSRPSGKRPPP 357
Query: 269 AQEDH------AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM 322
ED+ YP AGA N V L V ++ D D+ + + W
Sbjct: 358 GLEDYPEVREIKYPKAGAPNPVVSLQFYDVEKQEVFSIEAPDNFED---DDRIIIEIVWG 414
Query: 323 HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL----DSWV--NLHDCFTPLDKGV 376
+ + NR LKV FD K K++ VE + WV + F P D
Sbjct: 415 TEGKILVRATNRESDVLKVFLFDTKARTSKLVRVENVADIDGGWVEPTQYTWFIPADPSN 474
Query: 377 TKYSGGFIWASEKTGFRHL-YLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTL 434
+ G++ G+ HL Y ++ + +T+G+W +V+ V+ G VYF T
Sbjct: 475 GRPHDGYLDTVIHEGYEHLGYFTPLDNSEPILLTQGEWEVVDAPTAVDLRKGIVYFISTK 534
Query: 435 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILL 494
+ P E HLY L + + P+ T+ G + H + + P + ++
Sbjct: 535 ESPTERHLYQVNL----DGSNLKPLTDTSKPGYYDVSFSHGTGYALLSYRGPSIPWQAIV 590
Query: 495 CSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPP- 553
+ D E + R+ P +I Q DG L +P + P
Sbjct: 591 NTETDELKYEETIEDNAGLARMVDSYALPTEIYQNVTIDGFTLQVVERRP--PHFNPAKK 648
Query: 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 613
Y L +Y GP Q V D N +D ++ S G +V +D RGT G K ++ N
Sbjct: 649 YPVLFYLYNGPRSQTV-DRKFN-IDFQSYVASSLGYIVVTVDGRGTGFSGRKTRCIVRGN 706
Query: 614 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPV 672
G +A DQ+T A+ ++ + ++GWSYGG+++ TL + FQ ++ APV
Sbjct: 707 LGYYEAYDQITTAKLWGEKPYVDETRMSIWGWSYGGFMTLKTLEQDAGQTFQYGMAVAPV 766
Query: 673 TSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVH-KMKGKLLLVHGMIDENVHFRHTAR 731
T W YD+ YTE+YM P+ +P GY+ +S+ + + L++HG D+NVH ++T
Sbjct: 767 TDWRHYDSIYTERYMHTPAHNPNGYDNTSITDMTALQQTVRFLVIHGASDDNVHIQNTLV 826
Query: 732 LINAL-VAARKPYEILIFPDERHMPRRHRDRIYMEERI 768
L++ L +A + Y++ +PD H H + ER+
Sbjct: 827 LVDKLDLAGVQNYDLHFYPDSDHSINFHNAHRMVYERL 864
|
Type IV dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|B6QVW4|DAPB_PENMQ Probable dipeptidyl-aminopeptidase B OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=dapB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 162/638 (25%), Positives = 284/638 (44%), Gaps = 42/638 (6%)
Query: 153 QDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGN 212
Q L +P+ ++ +S SP D + F RD L++ L ++ QLT G
Sbjct: 260 QPLDPDEPKGRIQLASWSPQSD--------AVVFTRDNNLYLRKLDSDKVSQLTKDG-GK 310
Query: 213 TVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQ------GKSSV 265
V +G+ +++ +EE+ + WWS D K++AF + + S +P F I + K
Sbjct: 311 DVFNGVPDWVYEEEVFGTDSTTWWSKDGKYVAFLRTNESMVPEFPIEYYMSRPSGKKPPA 370
Query: 266 GSEAQEDH---AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM 322
G + D YP AG+ N V L V +++ G D D+ + V W
Sbjct: 371 GLDKYPDVRKIKYPKAGSPNPVVTLQFYDIENAEVFSVNVSGGFAD---DDRLITEVVWA 427
Query: 323 HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL----DSW--VNLHDCFTPLDKGV 376
+ + NR ++ + D+ + +++ V+ W V F P D
Sbjct: 428 SSGKVLVKEFNRESDVIRTVLIDVPSRTGELVRVDNFAQDDGGWAEVTQSTTFIPADPAN 487
Query: 377 TKYSGGFIWASEKTGFRHL-YLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTL 434
+ G+I G+ H Y +N + +T G W +V+ V+ A+ VYF +
Sbjct: 488 GRPDDGYIDIIVHDGYDHWGYFTPVNNSVPVLLTSGPWEVVDTEPAVDLANNIVYFVASK 547
Query: 435 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILL 494
+ P + H+Y KL + + P+ G + A + +D P + ++
Sbjct: 548 ESPTQRHVYSVKL----DGSDLQPLTDVTKAGYYDASFSIGGGYVLLSYDGPRVPWQKVI 603
Query: 495 CSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGP-PP 553
+ + + + EQ + ++ P +I Q D L +P + P
Sbjct: 604 NTPSNQNPFEEIIEQNEQLSKMIEKYALPAEIYQNITIDNVTLQVVERRP--PHFNPVKK 661
Query: 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 613
Y L +YGGP Q V + +VD ++ + G +V +D RGT G ++ N
Sbjct: 662 YPVLFWLYGGPGSQSVDRRF--SVDFQSYVASTLGYIVVTVDGRGTGHIGRAARTIVRGN 719
Query: 614 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPV 672
G +A DQ+ A+ K+ HI ++GWSYGG+++ TL + FQ ++ +PV
Sbjct: 720 LGYWEARDQIETAKAWAKKPYVDKDHIAIWGWSYGGFMTLKTLEQDAGQTFQYGMAVSPV 779
Query: 673 TSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTAR 731
T W YD+ YTE+YM P +P GYE+S++ + + + L++HG D+NVHF++T
Sbjct: 780 TDWRFYDSIYTERYMHTPEHNPTGYEHSAISNMTALQQNVRFLVMHGTADDNVHFQNTLS 839
Query: 732 LINAL-VAARKPYEILIFPDERHMPRRHRDRIYMEERI 768
LI+ L +A + Y++ ++PD H H + +R+
Sbjct: 840 LIDKLDMAGVENYDVHVYPDSDHSIYFHNAHKMVYDRL 877
|
Type IV dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) (taxid: 441960) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|Q0CXB1|DAPB_ASPTN Probable dipeptidyl-aminopeptidase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dapB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 163/637 (25%), Positives = 285/637 (44%), Gaps = 44/637 (6%)
Query: 155 LSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTV 214
L PE ++ +S SP D + FVRD + + L ++ +T G +
Sbjct: 262 LDPDVPEGRVQLASWSPNSD--------AVVFVRDNNMFLRKLSSDKVVPITKDG-GKDL 312
Query: 215 THGLAEYIAQEE-MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE---AQ 270
+G+ +++ +EE + + WWS D+K++AF + + S +P + + + G +
Sbjct: 313 FYGVPDWVYEEEVLSGNSATWWSNDAKYVAFLRTNESTVPEYPVQYFLSRPSGKKPLPGL 372
Query: 271 EDH------AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHG 324
ED+ YP AGA N V L + V +++ D D+ + V W
Sbjct: 373 EDYPDVRQIKYPKAGAPNPVVNLQFYNVEKNEVFSVEVPDDFAD---DDRIIIEVLWAAE 429
Query: 325 NILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL----DSWVNLHDC--FTPLDKGVTK 378
+ + + NR LK+ D ++ K++ +E++ WV F P D +
Sbjct: 430 SNVLVRATNRESDVLKIFLIDTESRTGKMVRLEDIVGLDGGWVEPSQSTRFIPADPAAGR 489
Query: 379 YSGGFIWASEKTGFRHL-YLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDG 436
+ G+I G+ HL Y ++ +T G+W +VE V+ G VYF T +
Sbjct: 490 PNDGYIDTVIHDGYDHLAYFTPLDNPEPIMLTTGEWEVVEAPTAVDLRRGLVYFVATKEA 549
Query: 437 PLESHLYCAKLYPDWNHTLEAPVKLTNGKGK-HVAVLDHNMRNFVDFHDSLDSPPRILLC 495
P + H+Y +L + + P+ T+ G HV+ D + + P + ++
Sbjct: 550 PTQRHVYQVQL----DGSNLKPLTDTSKPGYYHVSFSDGTAYALLSYQGP-SIPWQAIIN 604
Query: 496 SLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGP-PPY 554
+ D + E+ + R+ P + DG L +P + P Y
Sbjct: 605 TEGDDVVFEETIEENPELARMVETYAIPSKVFSNITIDGFTLQMVERRP--PHFNPHKKY 662
Query: 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 614
L +YGGP Q V + T+D ++ + G +V LD RGT G + I+ N
Sbjct: 663 PVLFFLYGGPGSQTVDRKF--TIDFQSYVASNLGYIVVTLDGRGTGFIGREARCIIRGNL 720
Query: 615 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVT 673
G +A DQ+T A+ ++ + ++GWSYGG+++ TL + FQ ++ APVT
Sbjct: 721 GYYEAHDQITAAKMFAEKSYVDESRMAIWGWSYGGFMTLKTLEQDAGQTFQYGMAVAPVT 780
Query: 674 SWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARL 732
W YD+ YTE+YM P +P GY+ SS+ + + L++HG D+NVH ++T L
Sbjct: 781 DWRFYDSIYTERYMHTPQHNPSGYDNSSITDMAALEENVRFLVMHGASDDNVHLQNTLTL 840
Query: 733 INAL-VAARKPYEILIFPDERHMPRRHRDRIYMEERI 768
I+ L ++ + Y++ +PD H H + ER+
Sbjct: 841 IDKLDLSNVQNYDVHFYPDSDHSIFFHNAHYMVYERL 877
|
Type IV dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 776 | ||||||
| 359490801 | 754 | PREDICTED: dipeptidyl peptidase 8-like [ | 0.970 | 0.998 | 0.835 | 0.0 | |
| 147835769 | 754 | hypothetical protein VITISV_002739 [Viti | 0.970 | 0.998 | 0.835 | 0.0 | |
| 255551275 | 746 | dipeptidyl peptidase IV, putative [Ricin | 0.960 | 0.998 | 0.803 | 0.0 | |
| 356516055 | 770 | PREDICTED: dipeptidyl peptidase 8-like [ | 0.988 | 0.996 | 0.771 | 0.0 | |
| 356509261 | 770 | PREDICTED: dipeptidyl peptidase 8-like [ | 0.988 | 0.996 | 0.768 | 0.0 | |
| 449456387 | 775 | PREDICTED: dipeptidyl peptidase 8-like [ | 0.993 | 0.994 | 0.753 | 0.0 | |
| 357463919 | 770 | Dipeptidyl peptidase [Medicago truncatul | 0.974 | 0.981 | 0.745 | 0.0 | |
| 357463921 | 773 | Dipeptidyl peptidase [Medicago truncatul | 0.974 | 0.978 | 0.742 | 0.0 | |
| 357142727 | 796 | PREDICTED: dipeptidyl peptidase 9-like [ | 0.997 | 0.972 | 0.665 | 0.0 | |
| 125539032 | 811 | hypothetical protein OsI_06810 [Oryza sa | 0.945 | 0.905 | 0.686 | 0.0 |
| >gi|359490801|ref|XP_002277892.2| PREDICTED: dipeptidyl peptidase 8-like [Vitis vinifera] gi|302143902|emb|CBI23007.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1342 bits (3473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/754 (83%), Positives = 696/754 (92%), Gaps = 1/754 (0%)
Query: 24 MPLTDNTAPQTIDDCVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKV 83
MP+TD Q+++DC+LF +EEIVQ PLPGYVAPTSIGFSPDD+LITYL SPDH+L+RKV
Sbjct: 1 MPVTDTCVAQSLEDCILFPVEEIVQYPLPGYVAPTSIGFSPDDSLITYLFSPDHTLNRKV 60
Query: 84 FSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143
F+FD +TCKQEL FSPPDGGLDE+N+SPEEKLRRER RERGLGVTRYEWVKTS KK++IM
Sbjct: 61 FAFDLETCKQELFFSPPDGGLDESNVSPEEKLRRERSRERGLGVTRYEWVKTSLKKRMIM 120
Query: 144 VPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR 203
VPLP GIYFQ+ SCSKPELKL+S+S SP+IDPHLS DGTM+A+VRD ELHV+NLL +E R
Sbjct: 121 VPLPVGIYFQEFSCSKPELKLASTSLSPIIDPHLSPDGTMLAYVRDHELHVINLLDDEPR 180
Query: 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKS 263
QLT GANGNT+THGLAEYIAQEEMDRK GYWWSLDS+FIAFTQVDSSEIP FRIMHQGKS
Sbjct: 181 QLTFGANGNTLTHGLAEYIAQEEMDRKNGYWWSLDSRFIAFTQVDSSEIPLFRIMHQGKS 240
Query: 264 SVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT-DQNYDEEYLARVNWM 322
SVG++AQEDHAYPFAGASNVKVRLGVVSAAGGP +WMDL CG D N +EEYLARVNWM
Sbjct: 241 SVGADAQEDHAYPFAGASNVKVRLGVVSAAGGPATWMDLLCGEMHDGNNEEEYLARVNWM 300
Query: 323 HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG 382
HGNILTAQVLNRS +KLK+LKFDI TGQRKVILVEE D+WV LHDCFTPLD GV ++SGG
Sbjct: 301 HGNILTAQVLNRSHSKLKILKFDINTGQRKVILVEEQDTWVTLHDCFTPLDVGVNRFSGG 360
Query: 383 FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442
FIWASEKTGFRHLYLHD NGTCLGPITEGDWMVEQI GVNEA+G VYFTGTLDGPLES+L
Sbjct: 361 FIWASEKTGFRHLYLHDANGTCLGPITEGDWMVEQIAGVNEAAGLVYFTGTLDGPLESNL 420
Query: 443 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502
Y AKL+ D N L+AP++LT+GKGKH+ VLDH M++FVD HDSLD PPR+LLCSL DGSL
Sbjct: 421 YSAKLFLDGNEPLQAPLRLTHGKGKHMVVLDHQMQSFVDIHDSLDFPPRVLLCSLSDGSL 480
Query: 503 VLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYG 562
V+PLYEQP TVPR KRLQLEPP+IVQIQANDGT L+GALYKPDE+R+GPPPYKTLISVYG
Sbjct: 481 VMPLYEQPFTVPRFKRLQLEPPEIVQIQANDGTTLFGALYKPDETRFGPPPYKTLISVYG 540
Query: 563 GPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQ 622
GP VQLVCDSW+NTVDMRAQYLRS+GILVWKLDNRGTARRGLKFE+ +K+N GRIDAEDQ
Sbjct: 541 GPSVQLVCDSWMNTVDMRAQYLRSRGILVWKLDNRGTARRGLKFESCLKYNAGRIDAEDQ 600
Query: 623 LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682
LTGAEWLIK+GLAKVGHIGLYGWSYGGYLSA+TLARFPD+F+CAVSGAPVTSWDGYDTFY
Sbjct: 601 LTGAEWLIKKGLAKVGHIGLYGWSYGGYLSAMTLARFPDIFRCAVSGAPVTSWDGYDTFY 660
Query: 683 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 742
TEKYMGLPSE+P GYEYSSVMHHVHK+KG LL+VHGMIDENVHFRHTARL+NALV+A KP
Sbjct: 661 TEKYMGLPSENPAGYEYSSVMHHVHKIKGSLLIVHGMIDENVHFRHTARLVNALVSAGKP 720
Query: 743 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
YE+LIFPDERHMPRR RDRIYMEERIW+FIER L
Sbjct: 721 YELLIFPDERHMPRRFRDRIYMEERIWDFIERNL 754
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147835769|emb|CAN75198.1| hypothetical protein VITISV_002739 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1342 bits (3473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/754 (83%), Positives = 696/754 (92%), Gaps = 1/754 (0%)
Query: 24 MPLTDNTAPQTIDDCVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKV 83
MP+TD Q+++DC+LF +EEIVQ PLPGYVAPTSIGFSPDD+LITYL SPDH+L+RKV
Sbjct: 1 MPVTDTCVAQSLEDCILFPVEEIVQYPLPGYVAPTSIGFSPDDSLITYLFSPDHTLNRKV 60
Query: 84 FSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143
F+FD +TCKQEL FSPPDGGLDE+N+SPEEKLRRER RERGLGVTRYEWVKTS KK++IM
Sbjct: 61 FAFDLETCKQELFFSPPDGGLDESNVSPEEKLRRERSRERGLGVTRYEWVKTSLKKRMIM 120
Query: 144 VPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR 203
VPLP GIYFQ+ SCSKPELKL+S+S SP+IDPHLS DGTM+A+VRD ELHV+NLL +E R
Sbjct: 121 VPLPVGIYFQEFSCSKPELKLASTSLSPIIDPHLSPDGTMLAYVRDHELHVINLLDDEPR 180
Query: 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKS 263
QLT GANGNT+THGLAEYIAQEEMDRK GYWWSLDS+FIAFTQVDSSEIP FRIMHQGKS
Sbjct: 181 QLTFGANGNTLTHGLAEYIAQEEMDRKNGYWWSLDSRFIAFTQVDSSEIPLFRIMHQGKS 240
Query: 264 SVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT-DQNYDEEYLARVNWM 322
SVG++AQEDHAYPFAGASNVKVRLGVVSAAGGP +WMDL CG D N +EEYLARVNWM
Sbjct: 241 SVGADAQEDHAYPFAGASNVKVRLGVVSAAGGPATWMDLLCGEXHDGNNEEEYLARVNWM 300
Query: 323 HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG 382
HGNILTAQVLNRS +KLK+LKFDI TGQRKVILVEE D+WV LHDCFTPLD GV ++SGG
Sbjct: 301 HGNILTAQVLNRSHSKLKILKFDINTGQRKVILVEEQDTWVTLHDCFTPLDVGVNRFSGG 360
Query: 383 FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442
FIWASEKTGFRHLYLHD NGTCLGPITEGDWMVEQI GVNEA+G VYFTGTLDGPLES+L
Sbjct: 361 FIWASEKTGFRHLYLHDANGTCLGPITEGDWMVEQIAGVNEAAGLVYFTGTLDGPLESNL 420
Query: 443 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502
Y AKL+ D N L+AP++LT+GKGKH+ VLDH M++FVD HDSLD PPR+LLCSL DGSL
Sbjct: 421 YSAKLFLDGNEPLQAPLRLTHGKGKHMVVLDHQMQSFVDIHDSLDFPPRVLLCSLSDGSL 480
Query: 503 VLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYG 562
V+PLYEQP TVPR KRLQLEPP+IVQIQANDGT L+GALYKPDE+R+GPPPYKTLISVYG
Sbjct: 481 VMPLYEQPFTVPRFKRLQLEPPEIVQIQANDGTTLFGALYKPDETRFGPPPYKTLISVYG 540
Query: 563 GPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQ 622
GP VQLVCDSW+NTVDMRAQYLRS+GILVWKLDNRGTARRGLKFE+ +K+N GRIDAEDQ
Sbjct: 541 GPSVQLVCDSWMNTVDMRAQYLRSRGILVWKLDNRGTARRGLKFESCLKYNAGRIDAEDQ 600
Query: 623 LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682
LTGAEWLIK+GLAKVGHIGLYGWSYGGYLSA+TLARFPD+F+CAVSGAPVTSWDGYDTFY
Sbjct: 601 LTGAEWLIKKGLAKVGHIGLYGWSYGGYLSAMTLARFPDIFRCAVSGAPVTSWDGYDTFY 660
Query: 683 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 742
TEKYMGLPSE+P GYEYSSVMHHVHK+KG LL+VHGMIDENVHFRHTARL+NALV+A KP
Sbjct: 661 TEKYMGLPSENPAGYEYSSVMHHVHKIKGSLLIVHGMIDENVHFRHTARLVNALVSAGKP 720
Query: 743 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
YE+LIFPDERHMPRR RDRIYMEERIW+FIER L
Sbjct: 721 YELLIFPDERHMPRRFRDRIYMEERIWDFIERNL 754
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551275|ref|XP_002516684.1| dipeptidyl peptidase IV, putative [Ricinus communis] gi|223544179|gb|EEF45703.1| dipeptidyl peptidase IV, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1282 bits (3318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/752 (80%), Positives = 672/752 (89%), Gaps = 7/752 (0%)
Query: 26 LTDNTAPQTIDDCVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFS 85
+ DNT PQ +DDC+LF +E+IVQSPLPGY APTSI FSPDD LIT+L S RKVF+
Sbjct: 1 MADNTTPQNLDDCILFPVEDIVQSPLPGYGAPTSISFSPDDALITFLFS------RKVFA 54
Query: 86 FDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP 145
FD KT KQEL FSPPDGGLDE+NISPEEKLRRER RERGLGVT+YEWVKTS KKK +MVP
Sbjct: 55 FDLKTFKQELFFSPPDGGLDESNISPEEKLRRERSRERGLGVTQYEWVKTSFKKKAVMVP 114
Query: 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQL 205
LP GIYFQ+LS SKPELKL SS SP+IDPHLS DGTM+A+V+D ELHVLNLL NE +QL
Sbjct: 115 LPAGIYFQELSSSKPELKLPSSPLSPIIDPHLSPDGTMLAYVKDSELHVLNLLYNESKQL 174
Query: 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSV 265
T G+ GNTVTHGLAEYIAQEEMDRK GYWWSLDSKFIAFTQVDSS IP FRIMHQGKSSV
Sbjct: 175 TFGSQGNTVTHGLAEYIAQEEMDRKNGYWWSLDSKFIAFTQVDSSGIPLFRIMHQGKSSV 234
Query: 266 GSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLARVNWMHG 324
G E+QEDHAYPFAGASNVKVRLGVVS AGG ++WMDL CGGT++ + ++EYL RVNWM G
Sbjct: 235 GLESQEDHAYPFAGASNVKVRLGVVSIAGGSITWMDLVCGGTEELDNEDEYLTRVNWMRG 294
Query: 325 NILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI 384
+ILTAQVLNRS TKL+++KFDIKTGQ KVILVEE D WVNLHDCFTPLDK VTKYSGGFI
Sbjct: 295 DILTAQVLNRSHTKLRIIKFDIKTGQGKVILVEEQDKWVNLHDCFTPLDKSVTKYSGGFI 354
Query: 385 WASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444
WASEKTGFRHLYLHD NGTCLGPITEG+WMVEQI GVNEA+G VYFT TLDGPLE +LYC
Sbjct: 355 WASEKTGFRHLYLHDANGTCLGPITEGEWMVEQIAGVNEAAGLVYFTATLDGPLEFNLYC 414
Query: 445 AKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVL 504
KL+ D + PV+LT+GKGKHV VLDH+MRNFVD HDSLD PPR+L SL DGS+++
Sbjct: 415 TKLFRDDSQNFLGPVRLTHGKGKHVVVLDHHMRNFVDIHDSLDFPPRVLYTSLHDGSVIM 474
Query: 505 PLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGP 564
PLYEQP T+PR KRL+LEPP+IVQ+QA+DGT+LYGALYKPD +++GPPPYKTLISVYGGP
Sbjct: 475 PLYEQPFTIPRFKRLELEPPEIVQVQASDGTILYGALYKPDPTKFGPPPYKTLISVYGGP 534
Query: 565 CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT 624
CVQ VCDSW+NTVDMRAQ+LRSKGILVWKLDNRG+ARRGLKFE S+K+N GRIDAEDQLT
Sbjct: 535 CVQYVCDSWLNTVDMRAQFLRSKGILVWKLDNRGSARRGLKFEGSLKYNAGRIDAEDQLT 594
Query: 625 GAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE 684
G EWLIKQGLAKVGHIG+YGWSYGGY+SA+ LARFPDVF+CAVSGAPVTSWDGYDTFYTE
Sbjct: 595 GTEWLIKQGLAKVGHIGVYGWSYGGYMSAMILARFPDVFRCAVSGAPVTSWDGYDTFYTE 654
Query: 685 KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744
KYMGLPS++P GYEYSSVMHHVHK+KG+LLLVHGMIDENVHFRHTARL+NALVAA KPYE
Sbjct: 655 KYMGLPSQNPSGYEYSSVMHHVHKLKGRLLLVHGMIDENVHFRHTARLVNALVAAGKPYE 714
Query: 745 ILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
+LIFPDERH R HR R+YMEERIWEF+ER+L
Sbjct: 715 LLIFPDERHTLRWHRSRVYMEERIWEFVERSL 746
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516055|ref|XP_003526712.1| PREDICTED: dipeptidyl peptidase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1242 bits (3213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/769 (77%), Positives = 690/769 (89%), Gaps = 2/769 (0%)
Query: 9 EKRSLKRLRSPSSCDMPLTDNTAPQTIDDCVLFSLEEIVQSPLPGYVAPTSIGFSPDDNL 68
EKR+ KR +S +MP+TD+ PQ DD +LF +EEIVQ PLPGYV+PTSI FSPDD+L
Sbjct: 3 EKRNPKRQKS-LPFNMPVTDSNNPQNFDDNILFPVEEIVQYPLPGYVSPTSISFSPDDSL 61
Query: 69 ITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVT 128
I+YL SPD+SL+RKV++FD KT QEL+FSPPDGGLDE+NISPEEKLRRERLRERGLGVT
Sbjct: 62 ISYLFSPDNSLNRKVYAFDLKTYTQELLFSPPDGGLDESNISPEEKLRRERLRERGLGVT 121
Query: 129 RYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR 188
RYEWVKTSSK+K +MVPLP G+Y QD+ SK ELKL S S SP+IDPHLS DG+M+A+VR
Sbjct: 122 RYEWVKTSSKRKAVMVPLPAGVYIQDIPHSKAELKLPSVSGSPIIDPHLSPDGSMLAYVR 181
Query: 189 DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVD 248
DCELHVLNLL NE +QLTHGA N +THGLAEYIAQEEMDRKTGYWWSLDSK+IAFT+VD
Sbjct: 182 DCELHVLNLLSNESKQLTHGAKENGLTHGLAEYIAQEEMDRKTGYWWSLDSKYIAFTEVD 241
Query: 249 SSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD 308
SSEIP FRIMHQGKSSVG EAQEDH+YPFAGASNVKVRLGVVS AG ++WM+L CGGT+
Sbjct: 242 SSEIPLFRIMHQGKSSVGLEAQEDHSYPFAGASNVKVRLGVVSVAGSSITWMNLLCGGTE 301
Query: 309 Q-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHD 367
Q N +EEYLARVNWMHGNILTAQ+LNR TK+K++KFDI+TGQRK ILVEE SW+N+HD
Sbjct: 302 QQNNEEEYLARVNWMHGNILTAQILNRHHTKIKIVKFDIRTGQRKNILVEENSSWINIHD 361
Query: 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQ 427
CFTPLDKGVTK+SGGFIWASEKTGFRHLYLHD NGTCLGPITEG+WMVEQI GVNEA+G
Sbjct: 362 CFTPLDKGVTKFSGGFIWASEKTGFRHLYLHDANGTCLGPITEGEWMVEQIAGVNEATGL 421
Query: 428 VYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLD 487
+YFTGTLDGPLES+LYCAKL+ D N L+AP++LT+ KGKH+ VLDH+M++FVD HDSL
Sbjct: 422 IYFTGTLDGPLESNLYCAKLFVDGNQPLQAPIRLTHSKGKHIVVLDHHMQSFVDIHDSLG 481
Query: 488 SPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDES 547
PPR+LLCSL+DGS++ PLYEQ T+PR K+LQLEPP+IV+IQANDGT LYGALYKPD S
Sbjct: 482 CPPRVLLCSLEDGSVIKPLYEQSFTIPRFKKLQLEPPEIVEIQANDGTTLYGALYKPDAS 541
Query: 548 RYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607
++GPPPYKT+I+VYGGP VQLVC+SW++TVD+RAQYLR++GILVWKLDNRGTARRGLKFE
Sbjct: 542 KFGPPPYKTMINVYGGPSVQLVCNSWLSTVDLRAQYLRNQGILVWKLDNRGTARRGLKFE 601
Query: 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV 667
+ +KH G+IDA+DQLTGAEWL+KQGLAK GHIGLYGWSYGGYLSA+TL+R+PD F+CA+
Sbjct: 602 SYLKHKLGQIDADDQLTGAEWLVKQGLAKGGHIGLYGWSYGGYLSAMTLSRYPDFFKCAI 661
Query: 668 SGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR 727
+GAPVTSWDGYDTFYTEKYMGLPSE+ +GYE SVM+ V ++KG+LLLVHGMIDENVHFR
Sbjct: 662 AGAPVTSWDGYDTFYTEKYMGLPSENKLGYESGSVMNQVQQLKGRLLLVHGMIDENVHFR 721
Query: 728 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
HTARLINALVAA KPYE+++FPDERHMPRRH DR+YME R+W+FI+R L
Sbjct: 722 HTARLINALVAAGKPYELIVFPDERHMPRRHSDRVYMEGRMWDFIQRNL 770
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509261|ref|XP_003523369.1| PREDICTED: dipeptidyl peptidase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/769 (76%), Positives = 681/769 (88%), Gaps = 2/769 (0%)
Query: 9 EKRSLKRLRSPSSCDMPLTDNTAPQTIDDCVLFSLEEIVQSPLPGYVAPTSIGFSPDDNL 68
EKR+ KR + P MP+TD+ PQ DD +LF +EEIVQ PLPGYV+PTSI FSPDD+L
Sbjct: 3 EKRNPKR-QKPLPFSMPVTDSNDPQNFDDNILFPVEEIVQYPLPGYVSPTSISFSPDDSL 61
Query: 69 ITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVT 128
I+YL SPD+SL+RKV++FD KT QEL+FSPPDGGLDE+NISPEEKLRRERLRERGLGVT
Sbjct: 62 ISYLFSPDNSLNRKVYAFDLKTNTQELLFSPPDGGLDESNISPEEKLRRERLRERGLGVT 121
Query: 129 RYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR 188
RYEWVKTSSK+K +MVPLP GIY QD+ SK ELKL S SP+IDPHLS DG+M+A+VR
Sbjct: 122 RYEWVKTSSKRKAVMVPLPAGIYIQDIPHSKAELKLPSVLGSPIIDPHLSPDGSMLAYVR 181
Query: 189 DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVD 248
DCELHVLNLL NE +QLTHGA N +THGLAEYIAQEEMDRKTGYWWSLDSK+IAFT+VD
Sbjct: 182 DCELHVLNLLSNESKQLTHGAKENGLTHGLAEYIAQEEMDRKTGYWWSLDSKYIAFTEVD 241
Query: 249 SSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD 308
SSEIP FRIMHQGKSSVG EAQEDH YPFAGASNVKVRLGVVS AG ++WMDL CGGT+
Sbjct: 242 SSEIPLFRIMHQGKSSVGLEAQEDHPYPFAGASNVKVRLGVVSVAGSSITWMDLLCGGTE 301
Query: 309 Q-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHD 367
Q N +EEYLARVNWMHGNILTAQ+LNR TK+K++KFDI+TGQRK IL EE SW+N+HD
Sbjct: 302 QQNNEEEYLARVNWMHGNILTAQILNRHHTKIKIVKFDIRTGQRKNILFEENSSWINIHD 361
Query: 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQ 427
CFTPLDKGVTK+SGGFIWASEKTGFRHLYLHD NGTCLGPITEG+WMVEQI GVNEA+G
Sbjct: 362 CFTPLDKGVTKFSGGFIWASEKTGFRHLYLHDANGTCLGPITEGEWMVEQIAGVNEATGL 421
Query: 428 VYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLD 487
+YFTGTLDGPLES+LYC+KL+ D + L+ PV+LT+ KGKH+ VLDH+MRNFVD HDSL
Sbjct: 422 IYFTGTLDGPLESNLYCSKLFVDGSQPLQVPVRLTHSKGKHIVVLDHHMRNFVDIHDSLG 481
Query: 488 SPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDES 547
PPR+LLCSL+DGSL+ PLYEQ T+PR K+LQLEPP+IV+I+ANDGT LYGALYKPD S
Sbjct: 482 CPPRVLLCSLEDGSLIKPLYEQSFTIPRFKKLQLEPPEIVEIRANDGTTLYGALYKPDAS 541
Query: 548 RYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607
R+GPPPYKT+I+VYGGP VQLV +SW++TVD+RAQYLR++GILVWKLDNRGTARRGLKFE
Sbjct: 542 RFGPPPYKTMINVYGGPSVQLVSNSWLSTVDLRAQYLRNQGILVWKLDNRGTARRGLKFE 601
Query: 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV 667
+ +K G+IDA+DQLTGAEWL+KQGL K GHIGLYGWSYGGYLSA+TL+R+PD F+CA+
Sbjct: 602 SYLKQKLGQIDADDQLTGAEWLVKQGLTKAGHIGLYGWSYGGYLSAMTLSRYPDFFKCAI 661
Query: 668 SGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR 727
+GAPVTSWDGYDTFYTEKYMGLPSE+ GYE SVM+ VH++KG+LLLVHGMIDENVHFR
Sbjct: 662 AGAPVTSWDGYDTFYTEKYMGLPSENKSGYESGSVMNQVHQLKGRLLLVHGMIDENVHFR 721
Query: 728 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
HTARLINALVAA K YE+++FPDERHMPRRH DR+YME R+W+FI+R L
Sbjct: 722 HTARLINALVAAGKSYELIVFPDERHMPRRHSDRVYMEGRMWDFIQRNL 770
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456387|ref|XP_004145931.1| PREDICTED: dipeptidyl peptidase 8-like [Cucumis sativus] gi|449497343|ref|XP_004160376.1| PREDICTED: dipeptidyl peptidase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1206 bits (3120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/776 (75%), Positives = 680/776 (87%), Gaps = 5/776 (0%)
Query: 1 MQSVDESEEKRSLKRLRSPSSCDMPLTDNTAPQTIDDCVLFSLEEIVQSPLPGYVAPTSI 60
MQSVDE ++++LKR R P S +M +T+++ Q++DD LF +EEIVQ PLPGYVAPTS+
Sbjct: 5 MQSVDEDSKQKNLKRSR-PLSNNMTVTNSSVAQSLDDSFLFPVEEIVQYPLPGYVAPTSL 63
Query: 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERL 120
FSPDD+ +TYL SPD SL++KVF+FD KT KQEL+FSPPDGGLDE NISPEEKLRRERL
Sbjct: 64 TFSPDDSFVTYLFSPDCSLNKKVFAFDIKTGKQELIFSPPDGGLDECNISPEEKLRRERL 123
Query: 121 RERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSD 180
RERGLGVTRYEWVKTS+K+K IMVPLP GIY QD S PELKLSS SP++D HLS D
Sbjct: 124 RERGLGVTRYEWVKTSTKRKAIMVPLPAGIYIQDFFGSTPELKLSSKPSSPIMDSHLSPD 183
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSK 240
G+M+AFV+D ELHV+NL NE RQLT GAN N ++HGLAEYIA+EEMDRK GYWWSLDSK
Sbjct: 184 GSMLAFVKDGELHVMNLSYNEVRQLTVGANTN-ISHGLAEYIAEEEMDRKNGYWWSLDSK 242
Query: 241 FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM 300
+IAFTQVD+S+IP FRIMHQGKSSVGS+AQEDHAY FAG SN VRLGVVS +GGP++WM
Sbjct: 243 YIAFTQVDTSKIPPFRIMHQGKSSVGSDAQEDHAYSFAGTSNAVVRLGVVSVSGGPITWM 302
Query: 301 DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360
DL CG T + EEYLARV WMH NIL AQ+LNR TKLK+L+FDIKTG+RKV+LVEE D
Sbjct: 303 DLLCGETGE---EEYLARVCWMHENILIAQILNRLHTKLKILRFDIKTGERKVLLVEEED 359
Query: 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVG 420
SW+NLHDCFTPLDK ++KYSGGFIWASEKTGFRHLYLHD +GTCLGPITEGDWMVEQI G
Sbjct: 360 SWINLHDCFTPLDKSISKYSGGFIWASEKTGFRHLYLHDGHGTCLGPITEGDWMVEQIAG 419
Query: 421 VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFV 480
VNEA+G VYFTGTLDGPLESHLYCAKL N L+ P++LT+GKGKHV VLDH M +FV
Sbjct: 420 VNEATGLVYFTGTLDGPLESHLYCAKLTTAGNTPLDPPIRLTHGKGKHVVVLDHRMGSFV 479
Query: 481 DFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGA 540
D HDSLDSPPR+LLCSL+DGS++LP+YEQ L +PRI+RL LEPP++V++QA DGT+LYGA
Sbjct: 480 DIHDSLDSPPRVLLCSLKDGSVILPIYEQTLAIPRIERLHLEPPEMVEVQACDGTLLYGA 539
Query: 541 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600
LYKP E+ +GPPPYKT+I VYGGP VQLV +SWINTVDMRAQYLRS+GILVWKLDNRGTA
Sbjct: 540 LYKPSEAIFGPPPYKTMIIVYGGPSVQLVSNSWINTVDMRAQYLRSRGILVWKLDNRGTA 599
Query: 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP 660
RRGLKFEA++K+N G IDA+DQL GA+WLI+QGLA+ G IGLYGWSYGG+LSA++LAR+P
Sbjct: 600 RRGLKFEAALKYNIGYIDADDQLVGAKWLIRQGLARAGEIGLYGWSYGGFLSAMSLARYP 659
Query: 661 DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMI 720
D+F+CAVSGAPVTSWDGYDTFYTEKYMGLP+ DP Y+ SSV++H+ KM G LLLVHGMI
Sbjct: 660 DIFRCAVSGAPVTSWDGYDTFYTEKYMGLPTRDPEVYKRSSVIYHIEKMTGSLLLVHGMI 719
Query: 721 DENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
DENVHFRHTARL+NAL++ARK YE+LIFPDERHMPR+H+DRIYMEERIWEFI+R L
Sbjct: 720 DENVHFRHTARLVNALISARKKYELLIFPDERHMPRQHQDRIYMEERIWEFIQRNL 775
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463919|ref|XP_003602241.1| Dipeptidyl peptidase [Medicago truncatula] gi|355491289|gb|AES72492.1| Dipeptidyl peptidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/758 (74%), Positives = 667/758 (87%), Gaps = 2/758 (0%)
Query: 20 SSCDMPLTDNTAPQTIDDCVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSL 79
S C +P+TD Q +DD +LF +EEI Q PLPGYV+PTSI FSPDD+LI+YL SPD++L
Sbjct: 14 SKC-LPVTDFNDVQNLDDGILFPVEEIAQYPLPGYVSPTSISFSPDDSLISYLFSPDNTL 72
Query: 80 SRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139
+RK+F+FD KT KQEL+FSPPDGGLDE+NISPEEKLRRERLRERGLGVTRYEWVKT+SK+
Sbjct: 73 NRKIFTFDLKTNKQELLFSPPDGGLDESNISPEEKLRRERLRERGLGVTRYEWVKTNSKR 132
Query: 140 KIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLI 199
K ++VPLP GIY D+S SK ELKL S SP+IDPHLS DG+M+A+VRDCELHV+NLL
Sbjct: 133 KAVLVPLPAGIYVHDISHSKTELKLPSIPASPIIDPHLSPDGSMLAYVRDCELHVMNLLS 192
Query: 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMH 259
+E +QLTHGA N THGLAEYIAQEEMDRKTGYWWSLDSK+IAFT+VD SEIP FRIMH
Sbjct: 193 DESKQLTHGAKENGFTHGLAEYIAQEEMDRKTGYWWSLDSKYIAFTEVDYSEIPLFRIMH 252
Query: 260 QGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLAR 318
QG+SSVG++AQEDH YPFAGASN K+RLGVVS AGG +WMDL CGG + + ++EYLAR
Sbjct: 253 QGRSSVGTDAQEDHPYPFAGASNAKIRLGVVSVAGGSTTWMDLVCGGVKELDNEDEYLAR 312
Query: 319 VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTK 378
VNWMHGNILTAQ++NR QTK+K++KFDI+TGQR+ ILVEE +W+N+HDCFTP DKGVTK
Sbjct: 313 VNWMHGNILTAQIINRHQTKIKIVKFDIRTGQRRDILVEENKTWINIHDCFTPFDKGVTK 372
Query: 379 YSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 438
+SGGFIWASEK+GFRHLYLHD NG CLGPITEG+WMVEQI GVNEA+G VYFTGTLD PL
Sbjct: 373 FSGGFIWASEKSGFRHLYLHDANGICLGPITEGEWMVEQIAGVNEATGLVYFTGTLDSPL 432
Query: 439 ESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498
ES+LYCAKL+ D L+AP +LT+ KGKH+ VLDH+MR FVD HDSL PPR+LLCSL+
Sbjct: 433 ESNLYCAKLFVDGTQPLQAPTRLTHSKGKHIVVLDHHMRTFVDIHDSLSCPPRVLLCSLE 492
Query: 499 DGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLI 558
DG++++PLYEQ + +P+ K+LQLEPP+IV+IQ++DGT LYGALYKPD SR+GPPPYKT+I
Sbjct: 493 DGTIIMPLYEQQIPIPKSKKLQLEPPEIVEIQSDDGTTLYGALYKPDPSRFGPPPYKTMI 552
Query: 559 SVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 618
+VYGGP VQLV +SW+NTVD+RAQYLR+KGILVWKLDNRGT+RRGLKFE +K G+ID
Sbjct: 553 NVYGGPSVQLVSNSWLNTVDLRAQYLRNKGILVWKLDNRGTSRRGLKFEGYLKQKLGQID 612
Query: 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678
A+DQ TGAEWL+K GLA+ GHIGLYGWSYGGYLSA+TL+R+PD F+CAV+GAPVTSWDGY
Sbjct: 613 ADDQFTGAEWLVKNGLAEFGHIGLYGWSYGGYLSAMTLSRYPDFFKCAVAGAPVTSWDGY 672
Query: 679 DTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 738
DTFYTEKYMGLPSE GY +SVM+HVHKM+G+LL+VHGMIDENVHFRHTARLINALVA
Sbjct: 673 DTFYTEKYMGLPSEYKSGYARASVMNHVHKMRGRLLIVHGMIDENVHFRHTARLINALVA 732
Query: 739 ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
A K YE++IFPDERHMPRR+ DR+YMEER+WEFI+R L
Sbjct: 733 AGKTYELIIFPDERHMPRRYSDRVYMEERMWEFIDRNL 770
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463921|ref|XP_003602242.1| Dipeptidyl peptidase [Medicago truncatula] gi|355491290|gb|AES72493.1| Dipeptidyl peptidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1186 bits (3067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/761 (74%), Positives = 668/761 (87%), Gaps = 5/761 (0%)
Query: 20 SSCDMPLTDNTAPQTIDDCVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSL 79
S C +P+TD Q +DD +LF +EEI Q PLPGYV+PTSI FSPDD+LI+YL SPD++L
Sbjct: 14 SKC-LPVTDFNDVQNLDDGILFPVEEIAQYPLPGYVSPTSISFSPDDSLISYLFSPDNTL 72
Query: 80 SRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139
+RK+F+FD KT KQEL+FSPPDGGLDE+NISPEEKLRRERLRERGLGVTRYEWVKT+SK+
Sbjct: 73 NRKIFTFDLKTNKQELLFSPPDGGLDESNISPEEKLRRERLRERGLGVTRYEWVKTNSKR 132
Query: 140 KIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLI 199
K ++VPLP GIY D+S SK ELKL S SP+IDPHLS DG+M+A+VRDCELHV+NLL
Sbjct: 133 KAVLVPLPAGIYVHDISHSKTELKLPSIPASPIIDPHLSPDGSMLAYVRDCELHVMNLLS 192
Query: 200 NEQRQLTHGANGN---TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFR 256
+E +QLTHGA N + THGLAEYIAQEEMDRKTGYWWSLDSK+IAFT+VD SEIP FR
Sbjct: 193 DESKQLTHGAKENGFVSPTHGLAEYIAQEEMDRKTGYWWSLDSKYIAFTEVDYSEIPLFR 252
Query: 257 IMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ-NYDEEY 315
IMHQG+SSVG++AQEDH YPFAGASN K+RLGVVS AGG +WMDL CGG + + ++EY
Sbjct: 253 IMHQGRSSVGTDAQEDHPYPFAGASNAKIRLGVVSVAGGSTTWMDLVCGGVKELDNEDEY 312
Query: 316 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375
LARVNWMHGNILTAQ++NR QTK+K++KFDI+TGQR+ ILVEE +W+N+HDCFTP DKG
Sbjct: 313 LARVNWMHGNILTAQIINRHQTKIKIVKFDIRTGQRRDILVEENKTWINIHDCFTPFDKG 372
Query: 376 VTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435
VTK+SGGFIWASEK+GFRHLYLHD NG CLGPITEG+WMVEQI GVNEA+G VYFTGTLD
Sbjct: 373 VTKFSGGFIWASEKSGFRHLYLHDANGICLGPITEGEWMVEQIAGVNEATGLVYFTGTLD 432
Query: 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLC 495
PLES+LYCAKL+ D L+AP +LT+ KGKH+ VLDH+MR FVD HDSL PPR+LLC
Sbjct: 433 SPLESNLYCAKLFVDGTQPLQAPTRLTHSKGKHIVVLDHHMRTFVDIHDSLSCPPRVLLC 492
Query: 496 SLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYK 555
SL+DG++++PLYEQ + +P+ K+LQLEPP+IV+IQ++DGT LYGALYKPD SR+GPPPYK
Sbjct: 493 SLEDGTIIMPLYEQQIPIPKSKKLQLEPPEIVEIQSDDGTTLYGALYKPDPSRFGPPPYK 552
Query: 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 615
T+I+VYGGP VQLV +SW+NTVD+RAQYLR+KGILVWKLDNRGT+RRGLKFE +K G
Sbjct: 553 TMINVYGGPSVQLVSNSWLNTVDLRAQYLRNKGILVWKLDNRGTSRRGLKFEGYLKQKLG 612
Query: 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675
+IDA+DQ TGAEWL+K GLA+ GHIGLYGWSYGGYLSA+TL+R+PD F+CAV+GAPVTSW
Sbjct: 613 QIDADDQFTGAEWLVKNGLAEFGHIGLYGWSYGGYLSAMTLSRYPDFFKCAVAGAPVTSW 672
Query: 676 DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINA 735
DGYDTFYTEKYMGLPSE GY +SVM+HVHKM+G+LL+VHGMIDENVHFRHTARLINA
Sbjct: 673 DGYDTFYTEKYMGLPSEYKSGYARASVMNHVHKMRGRLLIVHGMIDENVHFRHTARLINA 732
Query: 736 LVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
LVAA K YE++IFPDERHMPRR+ DR+YMEER+WEFI+R L
Sbjct: 733 LVAAGKTYELIIFPDERHMPRRYSDRVYMEERMWEFIDRNL 773
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357142727|ref|XP_003572672.1| PREDICTED: dipeptidyl peptidase 9-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/798 (66%), Positives = 632/798 (79%), Gaps = 24/798 (3%)
Query: 1 MQSVDESEEKRS----LKRLRSPSSCDMPLTDNTAP---------QTIDDCVLFSLEEIV 47
M+S+D + RS K+ R +MPL D+ + C+ +E+IV
Sbjct: 1 MRSLDAAVSARSDQHNSKKPRLEVETEMPLADSFVAGSSGVCGGNEESGGCLSMRVEDIV 60
Query: 48 QSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGG-LDE 106
Q PLPGY AP ++ FSPDD + +L SPD +L RKVF+ DP +QEL+F+PPDGG L+E
Sbjct: 61 QHPLPGYGAPVALSFSPDDRRVAFLYSPDGTLHRKVFTLDPGQRRQELLFAPPDGGGLEE 120
Query: 107 NNISPEEKLRRERLRERGLGVTRYEW----VKTSSKKKIIMVPLPDGIYFQDLSCSKPEL 162
N+S EE+LRRER RERGLGVTRYEW S + I+VPLP G+YFQDLS S+P L
Sbjct: 121 GNLSAEERLRRERSRERGLGVTRYEWRARRSGAPSSRAGIVVPLPSGVYFQDLSGSEPVL 180
Query: 163 KLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYI 222
KL S+ SP+IDPHLS DG+MIA+VRD ELH L E RQLT+GA + HGLAEYI
Sbjct: 181 KLQSTPTSPIIDPHLSPDGSMIAYVRDDELHNLGFADGETRQLTYGARESGKIHGLAEYI 240
Query: 223 AQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282
AQEEM+RK G+WWS DSK +AFT+VDSS+IP +RIMHQGKS VG +AQEDHAYPFAGA+N
Sbjct: 241 AQEEMERKMGFWWSPDSKHLAFTEVDSSDIPLYRIMHQGKSCVGPDAQEDHAYPFAGAAN 300
Query: 283 VKVRLGVVSAAGGPVSWMDLQCG---GTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKL 339
VK+RLGVV + GG V+WMDL CG GT + DEEYLARVNWMH N L QVLNR+ TKL
Sbjct: 301 VKLRLGVVPSHGGEVTWMDLLCGEPLGT--HGDEEYLARVNWMHHNALAVQVLNRAHTKL 358
Query: 340 KVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGV-TKYSGGFIWASEKTGFRHLYLH 398
K+LKFDI TG+R+V+L EE D W+ L+DCFTPLDKGV +KY GGFIWASEKTGFRHLY+H
Sbjct: 359 KLLKFDITTGKREVLLEEEHDIWITLNDCFTPLDKGVNSKYPGGFIWASEKTGFRHLYIH 418
Query: 399 DINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP 458
D NG CLGP+T+GDWMV+QI GVNE+SG +YFTGTLDGPLE++LYC L+PDW+ L+AP
Sbjct: 419 DKNGECLGPVTQGDWMVDQIAGVNESSGLIYFTGTLDGPLETNLYCTNLFPDWSLPLQAP 478
Query: 459 VKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKR 518
+LT G G+H +LDH + F+D +DS+ SPP ILLCSL DGS+V+PLYEQPLTV +K+
Sbjct: 479 KRLTQGTGRHSVILDHQLLRFIDVYDSIKSPPVILLCSLLDGSVVMPLYEQPLTVEPLKK 538
Query: 519 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 578
Q P++VQ DGT YG LY PDE++YGPPPYKTLI+VYGGP VQLV DSWI+TVD
Sbjct: 539 FQQLSPEMVQFSGKDGTSFYGTLYLPDENKYGPPPYKTLINVYGGPSVQLVSDSWISTVD 598
Query: 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG 638
MRAQYLRSKGILVWK+DNRG+ARRGL FE +K+N GR+DAEDQL GAEWLI+QGLAK G
Sbjct: 599 MRAQYLRSKGILVWKMDNRGSARRGLHFEGQLKYNIGRVDAEDQLAGAEWLIEQGLAKAG 658
Query: 639 HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 698
HIGLYGWSYGG+LSA+ LARFPD F CAVSGAPVT+WDGYDTFYTEKYMGLPSE YE
Sbjct: 659 HIGLYGWSYGGFLSAMCLARFPDTFCCAVSGAPVTAWDGYDTFYTEKYMGLPSEHRDAYE 718
Query: 699 YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 758
Y S+MHHV+ ++GKLLL+HGMIDENVHFRHTARLIN+L+A RKPYEIL+FPDERHMPR+
Sbjct: 719 YGSIMHHVNNLRGKLLLIHGMIDENVHFRHTARLINSLMAERKPYEILLFPDERHMPRQL 778
Query: 759 RDRIYMEERIWEFIERTL 776
DRIYMEERIW+F+ER+L
Sbjct: 779 DDRIYMEERIWDFVERSL 796
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125539032|gb|EAY85427.1| hypothetical protein OsI_06810 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/741 (68%), Positives = 612/741 (82%), Gaps = 7/741 (0%)
Query: 43 LEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDG 102
L +IVQ PLPGY AP ++ FSPDD + +L SPD +L R V++FDP +QEL+F PPDG
Sbjct: 71 LLDIVQHPLPGYGAPVALSFSPDDRRVAFLYSPDGTLHRNVYAFDPAQRRQELLFGPPDG 130
Query: 103 G-LDENNISPEEKLRRERLRERGLGVTRYEWVK----TSSKKKIIMVPLPDGIYFQDLSC 157
G L+E N+S EE+LRRER RERGLGVTRYEW T + + I+VPLP G+YFQDLS
Sbjct: 131 GGLEEGNLSAEERLRRERARERGLGVTRYEWRARLPGTPASRAGIVVPLPSGVYFQDLSG 190
Query: 158 SKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHG 217
++P LKL SS+ SP+IDPHLS DG+MIA+VRD ELH + + QLT+GA+ + HG
Sbjct: 191 AEPVLKLQSSATSPIIDPHLSPDGSMIAYVRDDELHTVGFSDGQTTQLTYGASESGKIHG 250
Query: 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277
LAEYIAQEEM+RK G+WWS DSK +AFT+VDSSEIP +RIMHQGKSSVG +AQEDHAYPF
Sbjct: 251 LAEYIAQEEMERKMGFWWSPDSKHLAFTEVDSSEIPLYRIMHQGKSSVGPDAQEDHAYPF 310
Query: 278 AGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNY-DEEYLARVNWMHGNILTAQVLNRSQ 336
AGA+NVKVRLGVVS+ GG ++WMDL CG + + DEEYLARVNWMH + + QVLNR+
Sbjct: 311 AGAANVKVRLGVVSSHGGEITWMDLLCGEPNSIHGDEEYLARVNWMHNSAIAVQVLNRTH 370
Query: 337 TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGV-TKYSGGFIWASEKTGFRHL 395
+KLK+LKFDI +G+R+VIL EE D+W+ LHDCFTPLDKGV +K+ GGFIWASEKTGFRHL
Sbjct: 371 SKLKLLKFDIASGKREVILEEEHDTWITLHDCFTPLDKGVNSKHPGGFIWASEKTGFRHL 430
Query: 396 YLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL 455
YLHD NG CLGP+T+GDWM++QI GVNE+SG +YFTGTLDGPLE++LY L+PDW+ L
Sbjct: 431 YLHDKNGVCLGPLTQGDWMIDQIAGVNESSGVIYFTGTLDGPLETNLYSTNLFPDWSLPL 490
Query: 456 EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPR 515
+ P +LT+G G+H +LDH + F+D +DS+ SPP ILLCSL DGS+++PLYEQPLTV
Sbjct: 491 QVPKRLTHGTGRHSVILDHQLLRFIDVYDSIKSPPVILLCSLLDGSVIMPLYEQPLTVQP 550
Query: 516 IKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN 575
+K+ Q P+IVQI+ DGT LYG LY PDE +YGPPPYKTL++VYGGP VQLV DSWI+
Sbjct: 551 LKKFQQLSPEIVQIEGKDGTALYGTLYLPDEKKYGPPPYKTLVNVYGGPSVQLVSDSWIS 610
Query: 576 TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635
TVDMRAQ+LRSKGILVWK+DNRGTARRGL+FE +K+N GR+DAEDQL GAEWLIK+GLA
Sbjct: 611 TVDMRAQFLRSKGILVWKMDNRGTARRGLQFEGQLKYNIGRVDAEDQLAGAEWLIKKGLA 670
Query: 636 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPV 695
K GHIGLYGWSYGG+LSA+ LARFPD F CAVSGAPVT+WDGYDTFYTEKYMGLPSE
Sbjct: 671 KPGHIGLYGWSYGGFLSAMCLARFPDTFSCAVSGAPVTAWDGYDTFYTEKYMGLPSEQRD 730
Query: 696 GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755
Y Y S+MHHV ++G+LLL+HGMIDENVHFRHTARLIN+L+A KPY+IL+FPDERHMP
Sbjct: 731 AYRYGSIMHHVKNLRGRLLLIHGMIDENVHFRHTARLINSLMAEGKPYDILLFPDERHMP 790
Query: 756 RRHRDRIYMEERIWEFIERTL 776
RR DRIYMEERIW+F+ER L
Sbjct: 791 RRLGDRIYMEERIWDFVERNL 811
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 776 | ||||||
| TAIR|locus:2169789 | 746 | AT5G24260 [Arabidopsis thalian | 0.951 | 0.989 | 0.670 | 2.6e-276 | |
| TIGR_CMR|SO_3990 | 763 | SO_3990 "dipeptidyl peptidase | 0.699 | 0.711 | 0.343 | 1.7e-84 | |
| UNIPROTKB|Q487B7 | 752 | CPS_1104 "Dipeptidyl peptidase | 0.694 | 0.716 | 0.331 | 1.7e-82 | |
| TIGR_CMR|CPS_1104 | 752 | CPS_1104 "dipeptidyl peptidase | 0.694 | 0.716 | 0.331 | 1.7e-82 | |
| ZFIN|ZDB-GENE-061013-777 | 885 | dpp9 "dipeptidyl-peptidase 9" | 0.466 | 0.409 | 0.350 | 7.3e-77 | |
| UNIPROTKB|Q86TI2 | 863 | DPP9 "Dipeptidyl peptidase 9" | 0.466 | 0.419 | 0.353 | 2.9e-74 | |
| UNIPROTKB|F1P1L1 | 855 | DPP9 "Uncharacterized protein" | 0.466 | 0.423 | 0.356 | 3.3e-74 | |
| UNIPROTKB|E2R8Z1 | 891 | DPP9 "Uncharacterized protein" | 0.466 | 0.406 | 0.350 | 6e-74 | |
| RGD|1588575 | 921 | Dpp9 "dipeptidyl peptidase 9" | 0.466 | 0.393 | 0.353 | 2.2e-73 | |
| UNIPROTKB|Q0C2V8 | 770 | HNE_1217 "Dipeptidyl aminopept | 0.400 | 0.403 | 0.344 | 8.3e-73 |
| TAIR|locus:2169789 AT5G24260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2656 (940.0 bits), Expect = 2.6e-276, P = 2.6e-276
Identities = 501/747 (67%), Positives = 599/747 (80%)
Query: 36 DDCVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL 95
D V F +E+IVQ+PLPGYVAPT++ FSPDD+LITYL SP+ +L R+V++FD + L
Sbjct: 3 DKDVPFGVEDIVQTPLPGYVAPTAVSFSPDDSLITYLFSPEKNLKRRVYAFDVNKGESNL 62
Query: 96 VFSPPDGGLDENNISPXXXXXXXXXXXXXXXVTRYEWVKTSSKKKIIMVPLPDGIYFQDL 155
VFSPPDGG+DE+NISP VTRYEWVKT+SK + I+VPLP G+Y +DL
Sbjct: 63 VFSPPDGGVDESNISPEEKLRRERLRERGLGVTRYEWVKTNSKMRFIVVPLPAGVYMKDL 122
Query: 156 SCS-KPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTV 214
S S PEL + SS SP+IDP LS +G +A+VR+ ELHVLNLL N+ +QLT GANG+T+
Sbjct: 123 SSSPNPELIVPSSPTSPIIDPRLSPNGLFLAYVRESELHVLNLLKNQTQQLTSGANGSTL 182
Query: 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274
+HGLAEYIAQEEMDR+ GYWWSLDSKFIA+T+VDSS+IP FRIMHQGK SVGSEAQEDHA
Sbjct: 183 SHGLAEYIAQEEMDRRNGYWWSLDSKFIAYTEVDSSQIPLFRIMHQGKRSVGSEAQEDHA 242
Query: 275 YPFAGASNVKVRLGVVSAAGG-PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN 333
YPFAGA N +RLGVVS+AGG +WM+L CGG N ++EYL RVNW+ GN+L QVLN
Sbjct: 243 YPFAGALNSTLRLGVVSSAGGGKTTWMNLVCGGRG-NTEDEYLGRVNWLPGNVLIVQVLN 301
Query: 334 RSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK-GVTKYSGGFIWASEKTGF 392
RSQ+KLK++ FDI TGQ V+L EE D+WV LHDCFTPL+K ++ SGGFIWASE+TGF
Sbjct: 302 RSQSKLKIISFDINTGQGNVLLTEESDTWVTLHDCFTPLEKVPSSRGSGGFIWASERTGF 361
Query: 393 RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 452
RHLYL++ +GTCLG IT G+WMVEQI GVNE VYFTGTLDGPLE++LYCAKL N
Sbjct: 362 RHLYLYESDGTCLGAITSGEWMVEQIAGVNEPMSLVYFTGTLDGPLETNLYCAKLEAG-N 420
Query: 453 HTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT 512
+ P++LT+GKGKH+ VLDH M+NFVD HDS+DSPPR+ LCSL DG+++ LYEQ
Sbjct: 421 TSRCQPMRLTHGKGKHIVVLDHQMKNFVDIHDSVDSPPRVSLCSLSDGTVLKILYEQTSP 480
Query: 513 VPRIKRLQLEPPDIVQIQANDG-TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCD 571
+ +K L+LEPP+ VQIQANDG T LYGA+YKPD S++GPPPYKT+I+VYGGP VQLV D
Sbjct: 481 IQILKSLKLEPPEFVQIQANDGKTTLYGAVYKPDSSKFGPPPYKTMINVYGGPSVQLVYD 540
Query: 572 SWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631
SWINTVDMR QYLRS+GILVWKLDNRGTARRGLKFE+ +KHNCG +DAEDQ+TGA+WLI+
Sbjct: 541 SWINTVDMRTQYLRSRGILVWKLDNRGTARRGLKFESWMKHNCGYVDAEDQVTGAKWLIE 600
Query: 632 QGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 691
QGLAK HI A L R+P++F CAVSGAPVTSWDGYD+FYTEKYMGLP+
Sbjct: 601 QGLAKPDHIGVYGWSYGGYLSATLLTRYPEIFNCAVSGAPVTSWDGYDSFYTEKYMGLPT 660
Query: 692 EDPVGYEYSSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 749
E+ Y SSVMHHV + K KL+LVHGMIDENVHFRHTARL+NALV A K YE+LIFP
Sbjct: 661 EEE-RYLKSSVMHHVGNLTDKQKLMLVHGMIDENVHFRHTARLVNALVEAGKRYELLIFP 719
Query: 750 DERHMPRRHRDRIYMEERIWEFIERTL 776
DERHMPR+ +DRIYME+RIWEFIE+ L
Sbjct: 720 DERHMPRKKKDRIYMEQRIWEFIEKNL 746
|
|
| TIGR_CMR|SO_3990 SO_3990 "dipeptidyl peptidase IV" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 197/573 (34%), Positives = 307/573 (53%)
Query: 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270
G + + +AE++AQEEMDR TGYWW+ D IAFT++D S + ++ + +
Sbjct: 210 GGVIKNAMAEFVAQEEMDRMTGYWWAPDESAIAFTRIDESAV---ELVTRNEIYADGIKL 266
Query: 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTA 329
+ YP AG +NV+++LGVV+ + W+ L D+N D YL RV+W+ L+
Sbjct: 267 TEQRYPAAGKNNVEIQLGVVTLKNKAIDWVTLS---DDKNKDI-YLPRVDWLPDSKHLSF 322
Query: 330 QVLNRSQTKL--KVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWAS 387
Q +R Q KL +++ D T + K ++ E D+WVNL++ D K FIWAS
Sbjct: 323 QWQSRDQQKLDLQLVALDSLT-KPKTLVKERSDAWVNLNN-----DLHFLKQQSAFIWAS 376
Query: 388 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447
E+ GF HLYL D+ G +T+G+W V+++ ++E +G VYFTG D P+E HLY L
Sbjct: 377 ERDGFNHLYLFDLKGKLKTQLTKGNWAVDELEFIDETAGWVYFTGRKDTPIEKHLYRVPL 436
Query: 448 YPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507
+E ++++ G H V N ++D+ +SL PP++ L D L
Sbjct: 437 A---GGNIE---RVSSEAGMHDPVFADNQSVYLDYFNSLSQPPQVSLHG--DKGQHLAWV 488
Query: 508 EQPLTV---PRIKRLQL-EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGG 563
EQ P L + P+ +++A DG +L L+KP G Y ++ VYGG
Sbjct: 489 EQNQVKAGHPLYDYAGLWQLPEFKELKAEDGQILQTRLFKPVPFDAGKK-YPAVVRVYGG 547
Query: 564 PCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQL 623
P QLV +SW + D QYL +G +V++LDNRG+A RG KFE I + G + DQ
Sbjct: 548 PHAQLVTNSW-SEQDYFTQYLVQQGYVVFQLDNRGSAHRGTKFEQVIYRHLGEAEVNDQK 606
Query: 624 TGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 683
G ++L ++ ++L + PD F+ A+SGAPVT W YDT YT
Sbjct: 607 VGVDYLRSLPFVDSNNVAIYGHSYGGYMALMSLFKAPDYFKAAISGAPVTDWRLYDTHYT 666
Query: 684 EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 743
E+Y+ P+ + GYE SS+ +V + LL+ HGM D+NV F ++ R+ AL K +
Sbjct: 667 ERYLAHPASNEQGYEASSLFPYVKNYQSGLLMYHGMADDNVLFENSTRVYKALQDEGKLF 726
Query: 744 EILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
+++ +P +H R + R ++ + +F++R L
Sbjct: 727 QMIDYPGSKHSMRGEKVRNHLYRSLADFLDRQL 759
|
|
| UNIPROTKB|Q487B7 CPS_1104 "Dipeptidyl peptidase IV" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 190/573 (33%), Positives = 312/573 (54%)
Query: 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270
G T+ +G++E++AQEEM R TGYWWS + K IAF +VD E P ++ ++ + +E
Sbjct: 202 GGTIKNGMSEFVAQEEMSRMTGYWWSPNEKHIAFLRVD--ETPVKTVI---RNEIYAEKI 256
Query: 271 E--DHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-L 327
E + YP G +NV ++L V G + +++L G +++ Y+ RV W+ + +
Sbjct: 257 ELIEQRYPATGTNNVHIQLAVTDIKGKKIRFVEL---GDNKDI---YIPRVKWLSDSKKV 310
Query: 328 TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWAS 387
+ Q+ +R Q L + +++K ++K +LVE+ W+NLH T L T FIWAS
Sbjct: 311 SYQLQSRDQKTLTLKTYNLKKRRQKTLLVEKSSHWLNLHKDLTFLSDNKT-----FIWAS 365
Query: 388 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447
E+ G++HLY +++ G + +T+G+W+V+ + V+E +G VYFTG D PLE HLY K+
Sbjct: 366 ERDGYKHLYHYNLKGELISQLTKGEWVVDSLTRVDEKNGWVYFTGRADTPLERHLY--KV 423
Query: 448 YPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507
P + E ++T G H +++D + +P ++ L S +G + L
Sbjct: 424 -PLSGKSPENVQRITKRNGFHSINFSQTSESYIDSFSNTKTPKQVSLHSA-NGEHITWLA 481
Query: 508 EQPLT-----VPRIKRLQLEPPDIVQIQANDGTV-LYGALYKPDESRYGPPPYKTLISVY 561
E +T P L + P+ ++++DG LY LYKP + G Y ++ VY
Sbjct: 482 ENKVTPEHPVAPYYNGLVM--PEFGSLKSDDGKADLYYKLYKPKNMQPGKK-YPVIVRVY 538
Query: 562 GGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAED 621
GGP QLV + W D+ QY+ +G +V++LDNRG+ RG FE I G+++ D
Sbjct: 539 GGPHAQLVTNKW-QGADI-TQYMLQQGYIVYQLDNRGSNYRGTAFEFPIYETLGQVEVAD 596
Query: 622 QLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTF 681
Q+TG ++L I +T+ + D F+ VSGAPVT W YDT
Sbjct: 597 QITGVKYLHTLPYVDKERIGVFGHSYGGYMALMTMFKAGDYFKAGVSGAPVTDWMLYDTH 656
Query: 682 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741
YTE+Y+ P+ + GY+ SSV +V + G +++ HGM D+NV F +T +LI AL K
Sbjct: 657 YTERYLNHPNVNAAGYQQSSVFPYVSGLSGPMMVYHGMADDNVLFTNTTKLIKALQDEGK 716
Query: 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774
+E++ +P +H R + ++++ I +F +R
Sbjct: 717 LFELMTYPGSKHSMRGKKVKVHLNATIMDFFDR 749
|
|
| TIGR_CMR|CPS_1104 CPS_1104 "dipeptidyl peptidase IV" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 190/573 (33%), Positives = 312/573 (54%)
Query: 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270
G T+ +G++E++AQEEM R TGYWWS + K IAF +VD E P ++ ++ + +E
Sbjct: 202 GGTIKNGMSEFVAQEEMSRMTGYWWSPNEKHIAFLRVD--ETPVKTVI---RNEIYAEKI 256
Query: 271 E--DHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-L 327
E + YP G +NV ++L V G + +++L G +++ Y+ RV W+ + +
Sbjct: 257 ELIEQRYPATGTNNVHIQLAVTDIKGKKIRFVEL---GDNKDI---YIPRVKWLSDSKKV 310
Query: 328 TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWAS 387
+ Q+ +R Q L + +++K ++K +LVE+ W+NLH T L T FIWAS
Sbjct: 311 SYQLQSRDQKTLTLKTYNLKKRRQKTLLVEKSSHWLNLHKDLTFLSDNKT-----FIWAS 365
Query: 388 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447
E+ G++HLY +++ G + +T+G+W+V+ + V+E +G VYFTG D PLE HLY K+
Sbjct: 366 ERDGYKHLYHYNLKGELISQLTKGEWVVDSLTRVDEKNGWVYFTGRADTPLERHLY--KV 423
Query: 448 YPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507
P + E ++T G H +++D + +P ++ L S +G + L
Sbjct: 424 -PLSGKSPENVQRITKRNGFHSINFSQTSESYIDSFSNTKTPKQVSLHSA-NGEHITWLA 481
Query: 508 EQPLT-----VPRIKRLQLEPPDIVQIQANDGTV-LYGALYKPDESRYGPPPYKTLISVY 561
E +T P L + P+ ++++DG LY LYKP + G Y ++ VY
Sbjct: 482 ENKVTPEHPVAPYYNGLVM--PEFGSLKSDDGKADLYYKLYKPKNMQPGKK-YPVIVRVY 538
Query: 562 GGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAED 621
GGP QLV + W D+ QY+ +G +V++LDNRG+ RG FE I G+++ D
Sbjct: 539 GGPHAQLVTNKW-QGADI-TQYMLQQGYIVYQLDNRGSNYRGTAFEFPIYETLGQVEVAD 596
Query: 622 QLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTF 681
Q+TG ++L I +T+ + D F+ VSGAPVT W YDT
Sbjct: 597 QITGVKYLHTLPYVDKERIGVFGHSYGGYMALMTMFKAGDYFKAGVSGAPVTDWMLYDTH 656
Query: 682 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741
YTE+Y+ P+ + GY+ SSV +V + G +++ HGM D+NV F +T +LI AL K
Sbjct: 657 YTERYLNHPNVNAAGYQQSSVFPYVSGLSGPMMVYHGMADDNVLFTNTTKLIKALQDEGK 716
Query: 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774
+E++ +P +H R + ++++ I +F +R
Sbjct: 717 LFELMTYPGSKHSMRGKKVKVHLNATIMDFFDR 749
|
|
| ZFIN|ZDB-GENE-061013-777 dpp9 "dipeptidyl-peptidase 9" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 7.3e-77, Sum P(3) = 7.3e-77
Identities = 134/382 (35%), Positives = 202/382 (52%)
Query: 408 ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463
+T G+W V G VNE + VYF GT D PLE HLY Y V+LT
Sbjct: 511 LTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVS-YESPGEI----VRLTK 565
Query: 464 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQP-LTVPRIK----R 518
H + N F+ + ++ +PP + + L G+ PL+++P ++ R
Sbjct: 566 PGFSHSCSVSQNFDMFISHYSNVSTPPCVHVYKLT-GADSDPLHKEPEFWASMMEATGCR 624
Query: 519 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 578
PP+I A+ G LYG LYKP + G + T++ VYGGP VQLV +S+
Sbjct: 625 PDYIPPEIFSFPASSGFRLYGMLYKPHNLKPGKK-HPTILFVYGGPQVQLVNNSYKGVKY 683
Query: 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKV 637
+R L S G V +D RG+ +RGLKFE ++K+ G+++ EDQ+ G +++ K +
Sbjct: 684 LRLNTLASLGYAVVVIDGRGSCQRGLKFEGALKNKMGQVEIEDQVEGLQFVAEKYKFIDL 743
Query: 638 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 697
+ + L P++F+ A++GAPVT W YDT YTE+YM +P + GY
Sbjct: 744 SRVAIHGWSYGGFLSLMGLIHRPNIFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQQGY 803
Query: 698 EYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754
E SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 804 EAGSVALHVDKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS 863
Query: 755 PRRHRDRIYMEERIWEFIERTL 776
R + E + F+++ L
Sbjct: 864 IRCPESGEHYEIMLLYFLQQHL 885
|
|
| UNIPROTKB|Q86TI2 DPP9 "Dipeptidyl peptidase 9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.9e-74, Sum P(3) = 2.9e-74
Identities = 135/382 (35%), Positives = 196/382 (51%)
Query: 408 ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463
+T G+W V G VNE + VYF GT D PLE HLY + E V+LT
Sbjct: 489 LTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVS----YEAAGEI-VRLTT 543
Query: 464 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 523
H + N FV + S+ +PP + + L G PL++QP + P
Sbjct: 544 PGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKLS-GPDDDPLHKQPRFWASMMEAASCP 602
Query: 524 PDIV-----QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 578
PD V LYG +YKP + G + T++ VYGGP VQLV +S+
Sbjct: 603 PDYVPPEIFHFHTRSDVRLYGMIYKPHALQPGKK-HPTVLFVYGGPQVQLVNNSFKGIKY 661
Query: 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKV 637
+R L S G V +D RG+ +RGL+FE ++K+ G+++ EDQ+ G +++ K G +
Sbjct: 662 LRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQFVAEKYGFIDL 721
Query: 638 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 697
+ + L P VF+ A++GAPVT W YDT YTE+YM +P + GY
Sbjct: 722 SRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQHGY 781
Query: 698 EYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754
E SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 782 EAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS 841
Query: 755 PRRHRDRIYMEERIWEFIERTL 776
R + E + F++ L
Sbjct: 842 IRCPESGEHYEVTLLHFLQEYL 863
|
|
| UNIPROTKB|F1P1L1 DPP9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 136/382 (35%), Positives = 199/382 (52%)
Query: 408 ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463
+T G+W V G VNEA+ VYF GT D PLE HLY Y V+LT
Sbjct: 481 LTGGEWEVLARHGSKIWVNEATKLVYFQGTKDTPLEHHLYVVS-YESPGEI----VRLTI 535
Query: 464 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 523
H + N F+ + S+ +PP + + L GS PL++QP + P
Sbjct: 536 PGFSHSCSMSQNFDMFISHYSSVSTPPCVHVYKLS-GSDDDPLHKQPKFWASMMEAASCP 594
Query: 524 PDIV-----QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 578
PD V + LYG +YKP + + G + T++ VYGGP VQLV +S+
Sbjct: 595 PDYVPPEIFHFRTQSDVELYGMVYKPHDVQPGKK-HPTVLFVYGGPQVQLVNNSFKGIKY 653
Query: 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKV 637
+R L S G V +D RG+ +RGL+FE ++K+ G+++ EDQ+ G ++ K G +
Sbjct: 654 LRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLYYVAEKYGFIDL 713
Query: 638 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 697
+ + L P+VF+ A++GAPVT W YDT YTE+YM +P + GY
Sbjct: 714 SRVAIHGWSYGGFLSLMGLICKPNVFKIAIAGAPVTVWMAYDTGYTERYMDIPENNQQGY 773
Query: 698 EYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754
E SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 774 EAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS 833
Query: 755 PRRHRDRIYMEERIWEFIERTL 776
R + E + F++ L
Sbjct: 834 IRCPESGEHYEITLLHFLQEYL 855
|
|
| UNIPROTKB|E2R8Z1 DPP9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 6.0e-74, Sum P(3) = 6.0e-74
Identities = 134/382 (35%), Positives = 196/382 (51%)
Query: 408 ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463
+T G+W V G VNE + VYF GT D PLE HLY Y V+LT
Sbjct: 517 LTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVS-YESAGEI----VRLTT 571
Query: 464 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 523
H + N F+ + S+ +PP + + L G PL++QP + P
Sbjct: 572 PGFSHSCSMSQNFDMFISHYSSVGTPPCVHVYKLS-GPDDDPLHKQPRFWASMMEAASCP 630
Query: 524 PDIV-----QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 578
PD V LYG +YKP + G + T++ VYGGP VQLV +S+
Sbjct: 631 PDYVPPEIFHFHTRSDVRLYGMIYKPHAVQPGKK-HPTVLFVYGGPQVQLVNNSFKGIKY 689
Query: 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKV 637
+R L S G V +D RG+ +RGL+FE ++K+ G+++ EDQ+ G +++ K G +
Sbjct: 690 LRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQFVAEKYGFIDL 749
Query: 638 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 697
+ + L P VF+ A++GAPVT W YDT YTE+YM +P + +GY
Sbjct: 750 SRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQLGY 809
Query: 698 EYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754
E SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 810 EAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS 869
Query: 755 PRRHRDRIYMEERIWEFIERTL 776
R + E + F++ L
Sbjct: 870 IRCPESGEHYEVTLLHFLQEYL 891
|
|
| RGD|1588575 Dpp9 "dipeptidyl peptidase 9" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 2.2e-73, Sum P(3) = 2.2e-73
Identities = 135/382 (35%), Positives = 194/382 (50%)
Query: 408 ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463
+T G+W V G VNE + VYF GT D PLE HLY Y V+LT
Sbjct: 547 LTSGEWEVLSRHGSKIWVNEQTKLVYFQGTKDTPLEHHLYVVS-YESAGEI----VRLTT 601
Query: 464 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 523
H + N FV + S+ +PP + + L G PL++QP + P
Sbjct: 602 PGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKLS-GPDDDPLHKQPRFWASMMEAASCP 660
Query: 524 PDIV-----QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 578
PD V LYG +YKP + G + T++ VYGGP VQLV +S+
Sbjct: 661 PDYVPPEIFHFHTRADVQLYGMIYKPHTLQPGRK-HPTVLFVYGGPQVQLVNNSFKGIKY 719
Query: 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKV 637
+R L S G V +D RG+ +RGL FE ++K+ G+++ EDQ+ G +++ K G +
Sbjct: 720 LRLNTLASLGYAVVVIDGRGSCQRGLHFEGALKNQMGQVEIEDQVEGLQYVAEKYGFIDL 779
Query: 638 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 697
+ + L P VF+ A++GAPVT W YDT YTE+YM +P + GY
Sbjct: 780 SRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQQGY 839
Query: 698 EYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754
E SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 840 EAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS 899
Query: 755 PRRHRDRIYMEERIWEFIERTL 776
R + E + F++ L
Sbjct: 900 IRCRESGEHYEVTLLHFLQEHL 921
|
|
| UNIPROTKB|Q0C2V8 HNE_1217 "Dipeptidyl aminopeptidase IV" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 8.3e-73, Sum P(2) = 8.3e-73
Identities = 111/322 (34%), Positives = 159/322 (49%)
Query: 460 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTV--PRIK 517
++T G + +++V S D PP+ L DG+ + + E L P
Sbjct: 450 RITPEGGSWSVSMGAGAKSYVGTFSSPDQPPQTALYKA-DGTRIAWINENALNEGHPYAP 508
Query: 518 RLQLEP-PDIVQIQANDGTVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWIN 575
L P+ I A D LY ++ KP + P Y ++ VYGGP VQ V + W
Sbjct: 509 YLTAHTAPEFGTIPAEDNQTLYYSIQKPPG--FDPAKKYPVIVEVYGGPHVQRVANDWRP 566
Query: 576 TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635
D Q+ G +V++LDNRGT RG +FE I G + DQL G EWL Q
Sbjct: 567 LGD---QFFTHAGYIVFRLDNRGTWNRGKRFEDVIHRQTGGPEVRDQLRGVEWLKAQPFV 623
Query: 636 KVGHIXXXXXXXXXXXXAITLARFPD-VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDP 694
I +T A+ P+ F A++GA VT W YDTFYTE+YMG P +
Sbjct: 624 DGERIAIQGWSYGGYMALMTAAQAPEGTFAAAIAGASVTDWSLYDTFYTERYMGTPENNA 683
Query: 695 VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754
GY SSV H+ +KG LLL+HGM D+NV F +T RL+ L A +P+E++ +P +RH
Sbjct: 684 EGYHASSVFAHIDGLKGPLLLIHGMADDNVTFDNTTRLMAELQARSQPFELMAYPGQRHG 743
Query: 755 PRRHRDRIYMEERIWEFIERTL 776
+ ++++ F+ER L
Sbjct: 744 IQGEALQVHLMRTRMAFLERHL 765
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00037262001 | SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (754 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00029481001 | SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (597 aa) | • | • | 0.524 | |||||||
| GSVIVG00038542001 | RecName- Full=Proline iminopeptidase; EC=3.4.11.5; (331 aa) | • | 0.415 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 776 | |||
| pfam00930 | 348 | pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP I | 1e-86 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 5e-55 | |
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 1e-52 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 1e-07 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 2e-06 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 4e-06 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 5e-05 | |
| COG1073 | 299 | COG1073, COG1073, Hydrolases of the alpha/beta sup | 7e-05 |
| >gnl|CDD|216201 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region | Back alignment and domain information |
|---|
Score = 277 bits (711), Expect = 1e-86
Identities = 113/359 (31%), Positives = 165/359 (45%), Gaps = 25/359 (6%)
Query: 136 SSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVL 195
++ +KI Y DL ++ + S DG +A+VRD L+V
Sbjct: 11 TNYEKIWRHSYTASYYIYDLE--TGTVEPLPPGEGKIQYAKWSPDGHKLAYVRDNNLYVR 68
Query: 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEE-MDRKTGYWWSLDSKFIAFTQVDSSEIPR 254
L ++ Q+T N + +GLA+++ +EE + YWWS D +AF + D SE+P
Sbjct: 69 ELATGKETQITSDG-SNGIFNGLADWVYEEEVFGSNSAYWWSPDGSRLAFLRFDESEVPI 127
Query: 255 FRIMHQGKSSVGSEAQEDHA--YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYD 312
+ E + YP AGA N V+L V A G + D +
Sbjct: 128 ITLPDYT----DDGPAEVRSIKYPKAGAPNPTVKLFVYDLASGKTVELVP---PDDLSDA 180
Query: 313 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPL 372
+ Y+ RV W L Q LNR Q L ++ D +TG+ V+L E D WV LH L
Sbjct: 181 DYYITRVKWTPDEKLLVQWLNRDQNVLDLVLVDTETGRTVVLLEETSDGWVELHQDPVFL 240
Query: 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTG 432
+ GF+W SE+ G++HLYL+D++G +T G+W V I+GV+E VYFT
Sbjct: 241 -----RDGSGFLWISERDGYKHLYLYDLDGKLPRQLTSGNWEVTSILGVDEKRDLVYFTA 295
Query: 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV-AVLDHNMRNFVDFHDSLDSPP 490
T D P E HLY L P +LT+ G H A N + +V + D+PP
Sbjct: 296 TEDSPGERHLYRVSL------DGGEPQRLTDESGDHRSASFSPNGKYYVLTYSGPDTPP 348
|
This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry. Length = 348 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 5e-55
Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 7/209 (3%)
Query: 575 NTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634
+ Q L +G +V + RG+ G + + K + G+ + +D + AE+LI QG
Sbjct: 1 PSFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGY 60
Query: 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF---YTEKYMGL-- 689
+ ++G SYGGYL+ L + PD+F+ AV+ PV W Y + +TE+YM
Sbjct: 61 VDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGN 120
Query: 690 PSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 747
P ++ GY Y S +K LLL+HG+ D+ V +L+ AL A K +LI
Sbjct: 121 PWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQAKGKNVLLLI 180
Query: 748 FPDERHMPRRHRDRIYMEERIWEFIERTL 776
FPDE H + R++ R F+ + L
Sbjct: 181 FPDEGHGGGKPRNKREEYARELAFLLKVL 209
|
Length = 212 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 193 bits (491), Expect = 1e-52
Identities = 91/335 (27%), Positives = 148/335 (44%), Gaps = 19/335 (5%)
Query: 447 LYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506
L V+ +G V D + R + S PP I L + + +
Sbjct: 293 SPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDRGEEAKLTSS 352
Query: 507 YEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCV 566
+K+++L P+ V ++NDG ++G LYKP Y ++ ++GGP
Sbjct: 353 NN-----SGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKK-YPLIVYIHGGPSA 406
Query: 567 QLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGA 626
Q + + Q L S G V + RG+ G +F +I+ + G +D ED +
Sbjct: 407 Q-----VGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAV 461
Query: 627 EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY 686
+ L+K L IG+ G SYGGY++ + + P F+ AV+ A W Y TE
Sbjct: 462 DALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR-FKAAVAVAGGVDWLLYFGESTEGL 520
Query: 687 MGLPSE-------DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 739
P E D YE S + + +K LLL+HG D+ V +L++AL
Sbjct: 521 RFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRK 580
Query: 740 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774
KP E+++FPDE H R +R+ + + I ++ +R
Sbjct: 581 GKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKR 615
|
Length = 620 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 41/171 (23%), Positives = 61/171 (35%), Gaps = 19/171 (11%)
Query: 620 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD 679
+D + AE LIK+G+ +G+ G S GG L L + P++F AV P+ Y
Sbjct: 482 DDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYH 541
Query: 680 TFY-----TEKYMG---LPSEDPVGYEYSSVMHHVHKMKGK-----LLLVHGMIDENVHF 726
+Y G P + YS H +K L+ + D+ VH
Sbjct: 542 LLTAGSSWIAEY-GNPDDPEDRAFLLAYSP----YHNLKPGQKYPPTLITTSLHDDRVHP 596
Query: 727 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEER-IWEFIERTL 776
H + L P + H I E + F+ RTL
Sbjct: 597 AHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647
|
Length = 648 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 17/163 (10%)
Query: 594 LDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSA 653
D G S ED L+ +G + L G S GG ++
Sbjct: 30 PDLPG-------HGDSDGPPRTPYSLEDDAADLAALLDA--LGLGPVVLVGHSLGGAVAL 80
Query: 654 ITLARFPDVFQCAV-SGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 712
AR P+ V P+ + + L + + + +
Sbjct: 81 AAAARRPERVAGLVLISPPLRDLEELLAADAAALLALLRAALLDADLREALARLTV---P 137
Query: 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755
+L++HG D V L A E+++ P H+P
Sbjct: 138 VLVIHGEDDPLVPPEA----ARRLAEALPGAELVVLPGAGHLP 176
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 33/173 (19%), Positives = 50/173 (28%), Gaps = 47/173 (27%)
Query: 581 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHI 640
A+ L S+G V +D G AE ++ I
Sbjct: 19 ARALASRGYNVVAVDYPGHGAS------------------LGAPDAEAVLADAPLDPERI 60
Query: 641 GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYS 700
L G S GG ++ + AR P V V A
Sbjct: 61 VLVGHSLGGGVALLLAARDPRVKAAVVLAAGDPPDA------------------------ 96
Query: 701 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
+ + K+ +L++HG D V L AL P E+++ H
Sbjct: 97 --LDDLAKLTVPVLIIHGTRDGVVPPEEAEALAAAL---PGPAELVVIEGAGH 144
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 26/134 (19%)
Query: 620 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD 679
D ++L +Q IG+ G+ GG L+ + R P+V + AV ++ G
Sbjct: 94 ADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEV-KAAV------AFYG-- 144
Query: 680 TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 739
GL ++D K+K +LL D + L AL A
Sbjct: 145 --------GLIADDT---------ADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDA 187
Query: 740 RKPYEILIFPDERH 753
++ I+P H
Sbjct: 188 GVKVDLEIYPGAGH 201
|
Length = 236 |
| >gnl|CDD|223999 COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 7e-05
Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 6/147 (4%)
Query: 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE 692
I ++G S GG L+ + L P++ + + +T E +
Sbjct: 155 TRLDASRIVVWGESLGGALALLLLGANPELARELIDYL-ITPGGFAPLPAPEAPLDTLPL 213
Query: 693 DPVGYEYSSVMHHVHKMKGK-LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 751
V K+ + +LLVHG DE V R L A A +P ++L P
Sbjct: 214 RAVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEA--ARERPKKLLFVPGG 271
Query: 752 RHMPRRHRDRIYME--ERIWEFIERTL 776
H+ + +++ EF+ER L
Sbjct: 272 GHIDLYDNPPAVEQALDKLAEFLERHL 298
|
Length = 299 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 776 | |||
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 100.0 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.97 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.96 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.94 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.92 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.89 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK10566 | 249 | esterase; Provisional | 99.88 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.87 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.87 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.87 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.86 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.86 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.85 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.85 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.85 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.84 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.83 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.83 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.82 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.82 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.81 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.8 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.79 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.79 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.78 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.78 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.78 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.78 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.77 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.77 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.76 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.76 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.74 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.74 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.73 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.73 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.73 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.73 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.73 | |
| PLN02511 | 388 | hydrolase | 99.73 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.73 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.72 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.72 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.72 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.71 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.71 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.7 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.7 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.7 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.7 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.7 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.69 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.69 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.69 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.69 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.68 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.68 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.67 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.66 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.66 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.65 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.65 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.65 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.65 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.65 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.64 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.64 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.64 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.64 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.64 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.64 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.64 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.63 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.63 | |
| PLN02578 | 354 | hydrolase | 99.63 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.63 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.63 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.63 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.62 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.62 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.61 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.6 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.6 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.6 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.59 | |
| PLN00021 | 313 | chlorophyllase | 99.59 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.59 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.59 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.59 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.58 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.57 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.57 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.57 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.57 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.57 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.57 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.55 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.55 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.55 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.54 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.54 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.53 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.51 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.5 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.49 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.48 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.48 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.47 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.47 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.45 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.45 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.44 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.44 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.43 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.43 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.43 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.42 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.4 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.4 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.4 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.39 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.38 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.38 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 99.38 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.37 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.36 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.35 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.35 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.34 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.33 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.33 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.32 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.31 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.3 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.3 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.3 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 99.29 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.29 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.27 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.26 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.25 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.25 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 99.25 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.25 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.23 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.23 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.23 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 99.22 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.21 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.2 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 99.19 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.18 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.18 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.17 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.17 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.16 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.15 | |
| PTZ00420 | 568 | coronin; Provisional | 99.14 | |
| PTZ00421 | 493 | coronin; Provisional | 99.14 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.13 | |
| PTZ00421 | 493 | coronin; Provisional | 99.13 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.13 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.12 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.11 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 99.1 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.1 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.09 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.08 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 99.07 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.07 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.06 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 99.05 | |
| PTZ00420 | 568 | coronin; Provisional | 99.04 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.04 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.03 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.01 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 99.01 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.01 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.01 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.01 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| PRK10115 | 686 | protease 2; Provisional | 99.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.99 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.99 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.98 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.98 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.97 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.93 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.93 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.93 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.93 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.92 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.92 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.92 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.91 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.9 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.87 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.87 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.87 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.85 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.85 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.84 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.83 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.82 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.78 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.78 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.77 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 98.77 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.76 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.75 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.75 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.74 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.74 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.73 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 98.73 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.73 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.71 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.71 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.69 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.69 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.69 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.68 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.68 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.65 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.64 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.64 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.63 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.62 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.62 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.61 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.6 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.6 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.59 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.59 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.59 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.58 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.58 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.57 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.57 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.57 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.55 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.53 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.53 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.52 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.51 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.51 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 98.5 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.47 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.46 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 98.46 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.45 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 98.45 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 98.44 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.43 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.43 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 98.43 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 98.42 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.42 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.42 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.42 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.42 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 98.41 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.4 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.38 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.38 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.37 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.37 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.37 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.35 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.34 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.34 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 98.33 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.33 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 98.3 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.29 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.26 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.26 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.24 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.22 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.21 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 98.2 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 98.2 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.2 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.16 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.16 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 98.15 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.15 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.14 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 98.14 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 98.14 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.06 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 98.05 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 98.05 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 98.05 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.05 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 98.02 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 98.01 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 98.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 98.0 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 97.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.96 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 97.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.92 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.91 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 97.9 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.89 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.89 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.88 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 97.87 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.85 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 97.84 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 97.83 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.79 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.78 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.77 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.76 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.76 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.74 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.74 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.73 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.71 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.71 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 97.66 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.64 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.64 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.63 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.63 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 97.63 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.62 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.61 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.61 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.61 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.61 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.59 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.59 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.58 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 97.58 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.58 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.58 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.57 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 97.56 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 97.55 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.53 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.52 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.52 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 97.51 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.5 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.5 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 97.49 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 97.49 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 97.47 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 97.46 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 97.45 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 97.43 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.42 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.41 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.39 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 97.39 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.39 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.38 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 97.38 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 97.34 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.32 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.31 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 97.29 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 97.28 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 97.21 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 97.21 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 97.21 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.2 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.19 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 97.16 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.16 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.16 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.15 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.15 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.15 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 97.11 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.1 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 97.08 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.05 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.01 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.01 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.98 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.88 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 96.86 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.86 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.84 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.83 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 96.79 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 96.78 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 96.78 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.77 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 96.69 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.67 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 96.65 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 96.61 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 96.61 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.6 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 96.56 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 96.55 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.55 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 96.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.49 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 96.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 96.46 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 96.37 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 96.34 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.33 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 96.31 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 96.23 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.2 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 96.1 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.09 | |
| COG3946 | 456 | VirJ Type IV secretory pathway, VirJ component [In | 96.04 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 96.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.03 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.91 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 95.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 95.83 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 95.8 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 95.71 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 95.7 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 95.69 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 95.62 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 95.6 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 95.54 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 95.54 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 95.48 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 95.42 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.41 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.27 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 95.25 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 95.22 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.17 | |
| PLN02209 | 437 | serine carboxypeptidase | 95.11 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 95.02 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.98 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 94.97 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 94.96 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 94.87 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.87 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.82 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.61 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 94.6 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 94.39 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 94.36 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 94.35 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 94.33 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 94.3 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 94.28 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.24 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 94.15 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 94.1 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 94.1 |
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=494.10 Aligned_cols=667 Identities=40% Similarity=0.633 Sum_probs=541.0
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCc--cc-----eecCCCC
Q 004067 96 VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSK--PE-----LKLSSSS 168 (776)
Q Consensus 96 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~--~~-----~~l~~~~ 168 (776)
+.+.++.+.....++.+++++++|.|....||.+|.|.. -...++|...+.+|...-.+.. .. ..+...+
T Consensus 122 ~qs~~~~g~~~sp~SrEe~LlrERkR~~~~GItsYe~hk---~sg~~lF~~~s~l~~c~d~g~~~~t~~p~~p~~v~t~~ 198 (867)
T KOG2281|consen 122 FQSTPDYGVYKSPPSREEELLRERKRLGVTGITSYEIHK---GSGKFLFQANSGLYHCSDGGPQGFTVSPLTPLPVKTSP 198 (867)
T ss_pred cccCCCcccccCCCChHHHHHHHHhhhceeeeeeEEEEc---CCccEEEEecCCccccccCCCcccccCCCCCccccCCC
Confidence 344455666688899999999999999999999999976 4555666666666654322211 11 1222333
Q ss_pred CCCccCceeCC-CCCEEEEEECCcEEEEecCCCceeEEeeCCCC------CceecCCcccceecccCCcceEEECCCC--
Q 004067 169 CSPVIDPHLSS-DGTMIAFVRDCELHVLNLLINEQRQLTHGANG------NTVTHGLAEYIAQEEMDRKTGYWWSLDS-- 239 (776)
Q Consensus 169 ~~~~~~~~~Sp-Dg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~------~~~~~~~~~~~~~~~~~~~~~~~wspDg-- 239 (776)
......|+.+| |+..|+|+...++|+.++.+++.+++|....+ +.+..|++.++.+||++|+.+++|+|-+
T Consensus 199 t~~~~dP~lcP~~~~fia~i~~~dl~V~n~~~~~ekrlt~~h~g~sn~~dd~~saGVasyv~QEEfdR~~GyWW~p~s~~ 278 (867)
T KOG2281|consen 199 TSTRMDPKLCPADPDFIAYIKVCDLWVLNILTGEEKRLTYIHNGSSNSKDDAISAGVASYVVQEEFDRFEGYWWSPPSGL 278 (867)
T ss_pred CCCccCcccCCCCccceeeeehhhhhhhhhhhchhhceeeeeccccccccchhhcCcchHHHHHHHHhhcceeecCCCCC
Confidence 33457789988 59999999999999999999999999874433 3567799999999999999999999743
Q ss_pred --CeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC---CceEEEEccc---CCCCCCC
Q 004067 240 --KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG---GPVSWMDLQC---GGTDQNY 311 (776)
Q Consensus 240 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~---~~~~~l~~~~---~~~~~~~ 311 (776)
.+|+|-..|++.+..+..+ ......+...+.+||..|..|++..|.++...+ |+...+.... +...++.
T Consensus 279 ~~~rIlYeeVdesev~V~h~~---s~~~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~v~~kdlv~~~~~~f~ 355 (867)
T KOG2281|consen 279 KILRILYEEVDESEVEVIHVP---SPVLGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYDVPLKDLVQPFHCLFE 355 (867)
T ss_pred ceEEEEeeecChhheEEEecc---CcccCCCccccccCCcCCCCCceeeEEEEEEeeccccceeccchhhcccccccccc
Confidence 4788877777766544443 333345788999999999999999998888776 4443332211 1112344
Q ss_pred CcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCce---------------------EEEEEeccCceeeccccc
Q 004067 312 DEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQR---------------------KVILVEELDSWVNLHDCF 369 (776)
Q Consensus 312 ~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~---------------------~~l~~~~~~~~~~~~~~~ 369 (776)
.-.++..+.|.|||+ ..+...+|.+..-.|.+++++.... ..+.++....|+..+++|
T Consensus 356 ~~EYI~Ragwtpdgkyvwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee~sd~winiHd~f 435 (867)
T KOG2281|consen 356 DVEYIARAGWTPDGKYVWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEEPSDGWINIHDIF 435 (867)
T ss_pred cceeeeeccccCCCcEEEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEecCCCceEEhhhcc
Confidence 557899999999999 5557788988888999999877655 667777788999999999
Q ss_pred ccCCCCccccCCeEEEEeccCCceEEEEEeCCC----------------------ceeeccccCCeEEEEE--EeecCCC
Q 004067 370 TPLDKGVTKYSGGFIWASEKTGFRHLYLHDING----------------------TCLGPITEGDWMVEQI--VGVNEAS 425 (776)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g----------------------~~~~~lt~~~~~~~~~--~~~s~dg 425 (776)
.+.+..-+.....++|+++..|+.+||++.... ++...||.++|.|... ++.+.-.
T Consensus 436 ~~~~~~~~e~~~~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl~r~Gi~VdE~~ 515 (867)
T KOG2281|consen 436 HPLPQSTHEASYPFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVLARHGIWVDEVR 515 (867)
T ss_pred cccccCCccceeeEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeehhhcCeeecccc
Confidence 886643223334589999999999999997443 2345678888887643 4577778
Q ss_pred cEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEe
Q 004067 426 GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 426 ~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (776)
+.+||.++.++|.+-+||.+..... +++.+||..+-.+...++.+.+.++..+++-..|+.+.++.+++.+....
T Consensus 516 ~LVYf~gt~d~PlE~hLyvvsye~~-----g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l 590 (867)
T KOG2281|consen 516 KLVYFVGTKDTPLEHHLYVVSYENP-----GEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPL 590 (867)
T ss_pred eEEEEEccCCCCceeeEEEEEEecC-----CceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcc
Confidence 9999999999999999999998422 37889998765567789999999999999999999999999887664333
Q ss_pred eccCCCchh-----hhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhh
Q 004067 506 LYEQPLTVP-----RIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR 580 (776)
Q Consensus 506 l~~~~~~~~-----~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~ 580 (776)
. .....-. ...+.++..+|.+.|.+..|..+++.+|+|.+..++ +|+|+|++++|||+.+.+.+.|...-...
T Consensus 591 ~-~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pg-kkYptvl~VYGGP~VQlVnnsfkgi~ylR 668 (867)
T KOG2281|consen 591 P-KQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPG-KKYPTVLNVYGGPGVQLVNNSFKGIQYLR 668 (867)
T ss_pred c-chhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCC-CCCceEEEEcCCCceEEeeccccceehhh
Confidence 2 1111111 223344556688999998899999999999987544 68999999999999999999997766666
Q ss_pred hHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 581 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 581 ~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
...|+++||.|+++|.||+-..|..|...+...+|+.+++|++.++++|.++ +.+|.+||+|-|||+||++++++++++
T Consensus 669 ~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~ 748 (867)
T KOG2281|consen 669 FCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQY 748 (867)
T ss_pred hhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcC
Confidence 7789999999999999999999999999999999999999999999999998 489999999999999999999999999
Q ss_pred CCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCC---CcEEEEecCCCCccChHHHHHHHHHH
Q 004067 660 PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK---GKLLLVHGMIDENVHFRHTARLINAL 736 (776)
Q Consensus 660 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~P~lii~G~~D~~v~~~~~~~~~~~l 736 (776)
|++|+++|+.+|+++|+.|+..|.++|++.|..+...|.+.+.+.++.++. ..+|++||.-|+.|+..+...+..+|
T Consensus 749 P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~l 828 (867)
T KOG2281|consen 749 PNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSAL 828 (867)
T ss_pred cceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccccchhhhhHHHHHHHH
Confidence 999999999999999999999999999999988888999999999998885 35999999999999999999999999
Q ss_pred HHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 737 VAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 737 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.++|++.++++||++.|++...+..+.+-.+++.|+++.
T Consensus 829 vkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~~ 867 (867)
T KOG2281|consen 829 VKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQEN 867 (867)
T ss_pred HhCCCceEEEEccccccccCCCccchhHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999863
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=439.42 Aligned_cols=623 Identities=26% Similarity=0.409 Sum_probs=505.6
Q ss_pred EEeecCCCceEEEEeCC----------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCC
Q 004067 131 EWVKTSSKKKIIMVPLP----------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLIN 200 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~~~----------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g 200 (776)
..+| |.+.+++..+ ...+++++.++... .....+...+....|||.|+.++|+..++||.......
T Consensus 103 ~~s~---d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wsp~~~~l~yv~~~niy~~~~~~~ 178 (755)
T KOG2100|consen 103 LISP---DRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKL-HPPEYEGSKIQYASWSPLGNDLAYVLHNNIYYQSSEED 178 (755)
T ss_pred ccCh---hhhhheeccCcccccceeeEEEEEEEEcCCCCcc-cCcccCCCeeEEEEEcCCCCEEEEEEecccccccCcCC
Confidence 5566 8888887743 23567778777722 12222223356799999999999999999999988888
Q ss_pred ceeEEeeCCCCCceecCCcccceeccc-CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+..+++.++..+.+..+.++|+++||. ....+.+|||||..++|...+...+..+.++.+... ..-+....+.||.+|
T Consensus 179 ~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~-~~yp~~~~~~ypk~g 257 (755)
T KOG2100|consen 179 EDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDD-DQYPKSTNFHYPKAG 257 (755)
T ss_pred CceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccceEEecccccc-ccCcccceeecCCCC
Confidence 888888888777899999999999666 667889999999999999999999999988888766 123556678999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
..++.+.++++|........+... ........++..+.|.-+.+.++.+.+|.+....+.++|.. +..........
T Consensus 258 ~~np~v~l~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~~~~~~~~cd~~-~~~~~~~~~~~ 333 (755)
T KOG2100|consen 258 APNPAVSLFVVDLHDPPRLGIPPP---TNQRSGEYYVTNVKWDTTEKVLVVWTNREQNISVETLCDTP-GICRVVYEESS 333 (755)
T ss_pred CCCCeEEEEEEeCCCceeeccCCc---cccccCceEEEEEEEecCccEEEEEEccCCCeeeeEEecCc-ccceeeEeccc
Confidence 999999999999655443331111 11234567889999999999899999999888888899887 56555555544
Q ss_pred C-ceeecccccccCCCCccccCCeE-EEEeccCC-ceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 360 D-SWVNLHDCFTPLDKGVTKYSGGF-IWASEKTG-FRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 360 ~-~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~g-~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
. .|+.... ..+ .+++++... ++.+..++ +.++......++ .+..+|.+.|.+.....++.+++.++|.+...
T Consensus 334 ~~~W~~~~~-~~~---~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~ 409 (755)
T KOG2100|consen 334 DGGWVEHQN-VEP---VFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEE 409 (755)
T ss_pred ccccccccc-ccc---eEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCC
Confidence 4 4875532 111 124444443 34444455 889988887776 78889999999998888888999999999988
Q ss_pred CCceeeEEEEEeCCCCCCccccceeecCCC-----CeEEEEEcCCcCEEEEEeeCCCCCC-EEEEEEcCCCceeEeeccC
Q 004067 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNGK-----GKHVAVLDHNMRNFVDFHDSLDSPP-RILLCSLQDGSLVLPLYEQ 509 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~ 509 (776)
++...+||++++. .. ....+++.. ...++++++..++++..++.+..|. .+-+...........|..+
T Consensus 410 ~~~~~~ly~i~~~--~~----~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n 483 (755)
T KOG2100|consen 410 DPSERHLYSISLG--SG----TVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETN 483 (755)
T ss_pred CCCceEEEEEEcc--cc----ccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccC
Confidence 7888999999983 22 344466554 2457799999999999998877653 3333333333335667777
Q ss_pred CCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCc
Q 004067 510 PLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI 589 (776)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~ 589 (776)
......++...++..+...+.. +|....+.+..|++.... +++|+|+.+||||+++.+...|...|. ...+...|+
T Consensus 484 ~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~-~kyPllv~~yGGP~sq~v~~~~~~~~~--~~~~s~~g~ 559 (755)
T KOG2100|consen 484 EELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPS-KKYPLLVVVYGGPGSQSVTSKFSVDWN--EVVVSSRGF 559 (755)
T ss_pred hhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCC-CCCCEEEEecCCCCcceeeeeEEecHH--HHhhccCCe
Confidence 7777788888888888888877 899999999999987444 699999999999998887777766653 335678999
Q ss_pred EEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC-CceEEEEE
Q 004067 590 LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP-DVFQCAVS 668 (776)
Q Consensus 590 ~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~-~~~~~~v~ 668 (776)
+|+.+|+||+|+.|..+.......+|..++.|+..+++++.+++++|.+||+|+|+|+||++++.++...+ +.|+|+++
T Consensus 560 ~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgva 639 (755)
T KOG2100|consen 560 AVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVA 639 (755)
T ss_pred EEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 88999999
Q ss_pred cCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcE-EEEecCCCCccChHHHHHHHHHHHHCCCCeEEEE
Q 004067 669 GAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKL-LLVHGMIDENVHFRHTARLINALVAARKPYEILI 747 (776)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~-lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 747 (776)
++|+++|..++..+.+++++.|..+...|.+.++...+.+++.|. |++||+.|..|+.+++.+++++|+.+|+++++++
T Consensus 640 vaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~v 719 (755)
T KOG2100|consen 640 VAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLV 719 (755)
T ss_pred ecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEE
Confidence 999999999999999999999998888899999999999999777 9999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 748 FPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 748 ~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
||+++|++........++..+..||..++
T Consensus 720 ypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 720 YPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred eCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 99999999888888899999999998653
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=391.99 Aligned_cols=572 Identities=23% Similarity=0.286 Sum_probs=387.7
Q ss_pred CeeeEEEeecCCCceEEEEeCC----------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----C
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLP----------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----C 190 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~----------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----~ 190 (776)
.+..+..+| +++.+++... ..+|+.|... .. .++... ....+.|||||+.+++... .
T Consensus 14 ~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~-~~~~~~--~~~~~~~spdg~~~~~~~~~~~~~~ 85 (620)
T COG1506 14 RVSDPRVSP---PGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VR-LLTFGG--GVSELRWSPDGSVLAFVSTDGGRVA 85 (620)
T ss_pred cccCcccCC---CCceeEEeeccccccccccccceEEEeccc--cc-ccccCC--cccccccCCCCCEEEEEeccCCCcc
Confidence 355667778 8888888733 3466655444 22 333332 4788999999999999982 3
Q ss_pred cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 191 ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 191 ~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
++|+++.. | .++..... +....|+|+|+.+++.......... +.. ....
T Consensus 86 ~l~l~~~~-g---~~~~~~~~------------------v~~~~~~~~g~~~~~~~~~~~~~~~------~~~---~~~~ 134 (620)
T COG1506 86 QLYLVDVG-G---LITKTAFG------------------VSDARWSPDGDRIAFLTAEGASKRD------GGD---HLFV 134 (620)
T ss_pred eEEEEecC-C---ceeeeecc------------------cccceeCCCCCeEEEEecccccccC------Cce---eeee
Confidence 68888888 5 22211111 3356799999999994322110000 000 0001
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC---ceEEEEEEECC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ---TKLKVLKFDIK 347 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~l~~~d~~ 347 (776)
..+.+-..+.......++++|.++ +...+ ......+..+.|.+|++.++....... .....+.+...
T Consensus 135 ~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (620)
T COG1506 135 DRLPVWFDGRGGERSDLYVVDIES-KLIKL---------GLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEG 204 (620)
T ss_pred cccceeecCCCCcccceEEEccCc-ccccc---------cCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecC
Confidence 111111122223456788888877 33222 334445666777777776665544332 22344444445
Q ss_pred CCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC--C---ceEEEEEeCCCceeec-cccCC-eEEEEEEe
Q 004067 348 TGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT--G---FRHLYLHDINGTCLGP-ITEGD-WMVEQIVG 420 (776)
Q Consensus 348 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--g---~~~l~~~~~~g~~~~~-lt~~~-~~~~~~~~ 420 (776)
++....++..... .....+ ..++..+.+..... + ...+++++.+.++... +...+ ........
T Consensus 205 ~~~~~~~~~~~~~---~~~~~~-------~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 274 (620)
T COG1506 205 NGELESLTPGEGS---ISKLAF-------DADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVE 274 (620)
T ss_pred CCceEEEcCCCce---eeeeee-------CCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhc
Confidence 6666666554322 111111 12233355544332 2 1355555522222222 11111 00001111
Q ss_pred ecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 421 VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 421 ~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
..-++..++|.+.... ....++.+... +. ...+..........|+.+++.+++..+++..|+++++++. +.
T Consensus 275 ~~~~~~~~~~~~~~~~-g~~~l~~~~~~--~~-----~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~-~~ 345 (620)
T COG1506 275 GGLDGDGLLFIATDGG-GSSPLFRVDDL--GG-----GVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR-GE 345 (620)
T ss_pred cccCCCcEEEEEecCC-CceEEEEEecc--CC-----ceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC-CC
Confidence 2246666777776622 23566666642 21 1222222222233555699999999999999999999887 33
Q ss_pred ceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhh
Q 004067 501 SLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR 580 (776)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~ 580 (776)
. .+.+.. ....+.+..+.++|.+++++.||.++++|++.|.+... .+++|+|+++||||..+.. | .+...
T Consensus 346 ~-~~~~~~---~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~-~k~yP~i~~~hGGP~~~~~---~--~~~~~ 415 (620)
T COG1506 346 E-AKLTSS---NNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDP-RKKYPLIVYIHGGPSAQVG---Y--SFNPE 415 (620)
T ss_pred c-eEEeec---ccccccccccCCceEEEEEcCCCCEEEEEEecCCCCCC-CCCCCEEEEeCCCCccccc---c--ccchh
Confidence 3 232222 34567778899999999999999999999999998632 2568999999999966542 2 44556
Q ss_pred hHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC
Q 004067 581 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP 660 (776)
Q Consensus 581 ~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~ 660 (776)
.+.|+.+||+|+.+|+||++++|++|.......++..+.+|+.++++++.+.+.+|++|++|+|+|+||+|+++++++.+
T Consensus 416 ~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~ 495 (620)
T COG1506 416 IQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP 495 (620)
T ss_pred hHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc
Confidence 88999999999999999999999999999999999999999999999998999999999999999999999999999877
Q ss_pred CceEEEEEcCCCCCcccccccccccccCC-------CCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHH
Q 004067 661 DVFQCAVSGAPVTSWDGYDTFYTEKYMGL-------PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733 (776)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~ 733 (776)
.|+++++.++..+|..+...+.+.+... ++.+.+.|...+|+.++.++++|+|+|||+.|.+||.+++++++
T Consensus 496 -~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~ 574 (620)
T COG1506 496 -RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLV 574 (620)
T ss_pred -hhheEEeccCcchhhhhccccchhhcCCHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHH
Confidence 8899999999888766544433333221 11145678999999999999999999999999999999999999
Q ss_pred HHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 734 NALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++|+..|+++++++||+++|.+..+++....+..+.+||.++|
T Consensus 575 ~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~ 617 (620)
T COG1506 575 DALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHL 617 (620)
T ss_pred HHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888999999999999999986
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=369.94 Aligned_cols=513 Identities=15% Similarity=0.155 Sum_probs=359.9
Q ss_pred ccCceeCCCCCEEEEEECC------cEEEEecCCCce--eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEE
Q 004067 172 VIDPHLSSDGTMIAFVRDC------ELHVLNLLINEQ--RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIA 243 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~ 243 (776)
+....|||||+.|+|..+. +|++.++++|+. ..+... ...+.|++||+.|+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---------------------~~~~~w~~D~~~~~ 187 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---------------------EPSFVWANDSWTFY 187 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---------------------ceEEEEeeCCCEEE
Confidence 4567899999999999863 599999998863 222110 12478999999999
Q ss_pred EEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC--ceEEEEcccCCCCCCCCcceEEEEEe
Q 004067 244 FTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG--PVSWMDLQCGGTDQNYDEEYLARVNW 321 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (776)
|.+.++... ...++|++++.++ +...+-.. ... ........
T Consensus 188 y~~~~~~~~------------------------------~~~~v~~h~lgt~~~~d~lv~~e------~~~-~~~~~~~~ 230 (686)
T PRK10115 188 YVRKHPVTL------------------------------LPYQVWRHTIGTPASQDELVYEE------KDD-TFYVSLHK 230 (686)
T ss_pred EEEecCCCC------------------------------CCCEEEEEECCCChhHCeEEEee------CCC-CEEEEEEE
Confidence 988643100 0156899999988 44444221 111 12223344
Q ss_pred ccCCeEEEEEEeecCceEEEEEEEC--CCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc-CCceEEEEE
Q 004067 322 MHGNILTAQVLNRSQTKLKVLKFDI--KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLH 398 (776)
Q Consensus 322 SpDg~~l~~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~ 398 (776)
+.|++.+++..... ....++++++ .++..+.+........ +.+. ..++.+++.++. .....|+.+
T Consensus 231 s~d~~~l~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~~~ly~~tn~~~~~~~l~~~ 298 (686)
T PRK10115 231 TTSKHYVVIHLASA-TTSEVLLLDAELADAEPFVFLPRRKDHE------YSLD-----HYQHRFYLRSNRHGKNFGLYRT 298 (686)
T ss_pred cCCCCEEEEEEECC-ccccEEEEECcCCCCCceEEEECCCCCE------EEEE-----eCCCEEEEEEcCCCCCceEEEe
Confidence 55898776444333 4566788774 3455555554433321 1111 113557777765 345678888
Q ss_pred eCC-CceeeccccC--CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec-CCCC-eEEEEEc
Q 004067 399 DIN-GTCLGPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-NGKG-KHVAVLD 473 (776)
Q Consensus 399 ~~~-g~~~~~lt~~--~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~-~~~~-~~~~~~s 473 (776)
++. .++.+.|..+ +..+..+. ++ ++.|++....++. ..|+.+++ .+. .+..|+ .... ...+.++
T Consensus 299 ~~~~~~~~~~l~~~~~~~~i~~~~-~~--~~~l~~~~~~~g~--~~l~~~~~--~~~----~~~~l~~~~~~~~~~~~~~ 367 (686)
T PRK10115 299 RVRDEQQWEELIPPRENIMLEGFT-LF--TDWLVVEERQRGL--TSLRQINR--KTR----EVIGIAFDDPAYVTWIAYN 367 (686)
T ss_pred cCCCcccCeEEECCCCCCEEEEEE-EE--CCEEEEEEEeCCE--EEEEEEcC--CCC----ceEEecCCCCceEeeeccc
Confidence 876 3444555444 23455544 43 5678888776654 67888886 332 455555 2222 2233344
Q ss_pred --CCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCC
Q 004067 474 --HNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGP 551 (776)
Q Consensus 474 --pdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~ 551 (776)
+++..+++..++...|+++|.+|..+++ .+.+.... ...+++..+ .++.+++++.||.+|+++++.++.. ...
T Consensus 368 ~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~-~~~l~~~~--~~~~~~~~~-~~e~v~~~s~DG~~Ip~~l~~~~~~-~~~ 442 (686)
T PRK10115 368 PEPETSRLRYGYSSMTTPDTLFELDMDTGE-RRVLKQTE--VPGFDAANY-RSEHLWITARDGVEVPVSLVYHRKH-FRK 442 (686)
T ss_pred CCCCCceEEEEEecCCCCCEEEEEECCCCc-EEEEEecC--CCCcCcccc-EEEEEEEECCCCCEEEEEEEEECCC-CCC
Confidence 7788899999999999999999997775 34454322 223555455 8899999999999999966664432 222
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
++.|+||++|||++... .+.|....+.|+++||+|+.+++||+|++|+.|........+..+++|+++++++|++
T Consensus 443 ~~~P~ll~~hGg~~~~~-----~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~ 517 (686)
T PRK10115 443 GHNPLLVYGYGSYGASI-----DADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLK 517 (686)
T ss_pred CCCCEEEEEECCCCCCC-----CCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Confidence 46699999999988754 2334445678999999999999999999999999987777777899999999999999
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc---c--ccccc--ccCCCCCC--ccchhcCCh
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---T--FYTEK--YMGLPSED--PVGYEYSSV 702 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~---~--~~~~~--~~~~~~~~--~~~~~~~~~ 702 (776)
++++|++|++++|.|+||+++.+++.++|++|+|+|+..|+.|+..+. . ....+ ..|.|++. ...+...+|
T Consensus 518 ~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP 597 (686)
T PRK10115 518 LGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSP 597 (686)
T ss_pred cCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999999976431 1 11111 12666532 234567899
Q ss_pred hhhhccCCCc-EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEe---cCCCCCCC-CCCcHHHHHHHHHHHHHHh
Q 004067 703 MHHVHKMKGK-LLLVHGMIDENVHFRHTARLINALVAARKPYEILIF---PDERHMPR-RHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 703 ~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~---~~~~H~~~-~~~~~~~~~~~~~~fl~~~ 775 (776)
+.++.+++.| +|++||.+|.+||+.++.+++++|++.+.+.+++++ +++||... ......+..+...+|+...
T Consensus 598 ~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~ 675 (686)
T PRK10115 598 YDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIAL 675 (686)
T ss_pred hhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999988 677899999999999999999999999999888888 99999842 2222344455567777654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=345.24 Aligned_cols=339 Identities=34% Similarity=0.573 Sum_probs=278.5
Q ss_pred CCCceEEEEe----------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEE
Q 004067 136 SSKKKIIMVP----------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQL 205 (776)
Q Consensus 136 ~~dg~~l~~~----------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~l 205 (776)
||||+++++. ..+++|++|+++++.+ +++... .....+.|||||+.|||+.+++||+.++.+++.++|
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~-~l~~~~-~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT-PLTPPP-PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE-ESS-EE-TTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE-ECcCCc-cccccceeecCCCeeEEEecCceEEEECCCCCeEEe
Confidence 4599999995 3467999999999998 777653 348899999999999999999999999999999999
Q ss_pred eeCCCCCceecCCcccceecc-cCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 206 THGANGNTVTHGLAEYIAQEE-MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
|.++ ...+.+|.++|+++|| +++..+++|||||++|+|.+.|++.++.+.+..+.......+....++||.+|+.++.
T Consensus 79 T~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 79 TTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp ES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred cccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 9988 6789999999999999 8999999999999999999999999999999988776433467889999999999999
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..|+++|+++++...+..+.. ......++..+.|++|++ .++.+.+|.++...|+++|+++|..+.+..+....|+
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~---~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNS---LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV 234 (353)
T ss_dssp EEEEEEESSSTCCCEE---HH---HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS
T ss_pred eEEEEEECCCCcEEEeeeccc---cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce
Confidence 999999999999877655310 124578899999999999 8888899999999999999999999999988888998
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
.....+.+. ..+++.++++++++|+.|||+++.+++..++||.+++.|..+..++++++.|||+++.++|.+.+||
T Consensus 235 ~~~~~~~~~----~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 235 DVYDPPHFL----GPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSSSEEEE-----TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred eeecccccc----cCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 653332221 1357779999999999999999999999999999999998888999999999999999888889999
Q ss_pred EEEeCCC-CCCccccceeecCCCCeE-EEEEcCCcCEEEEEeeCCCCCC
Q 004067 444 CAKLYPD-WNHTLEAPVKLTNGKGKH-VAVLDHNMRNFVDFHDSLDSPP 490 (776)
Q Consensus 444 ~~~~~~~-g~~~~~~~~~l~~~~~~~-~~~~spdg~~l~~~~~~~~~~~ 490 (776)
++++ + +. .+++||+..+.+ .++|||||++++..+++++.|+
T Consensus 311 ~v~~--~~~~----~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 311 RVSL--DSGG----EPKCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp EEET--TETT----EEEESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred EEEe--CCCC----CeEeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 9999 4 43 799999998876 9999999999999999998875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-27 Score=241.13 Aligned_cols=512 Identities=16% Similarity=0.152 Sum_probs=338.6
Q ss_pred ccCceeCCCCCEEEEEECC------cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEE
Q 004067 172 VIDPHLSSDGTMIAFVRDC------ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFT 245 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~ 245 (776)
+...+.|||++.+||..+. .|.+.|+++|+......... ...+.|.+|++.++|.
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~-------------------~~~~~Wa~d~~~lfYt 191 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNT-------------------SGSFAWAADGKTLFYT 191 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhccc-------------------ccceEEecCCCeEEEE
Confidence 5568999999999999763 48888999987644322211 2367899999999999
Q ss_pred EecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC--CceEEEEcccCCCCCCCCcceEEEEEecc
Q 004067 246 QVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG--GPVSWMDLQCGGTDQNYDEEYLARVNWMH 323 (776)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp 323 (776)
+.++...+. +|+...+.+ ...+.+-. -....+...+.=|.
T Consensus 192 ~~d~~~rp~-------------------------------kv~~h~~gt~~~~d~lvye-------E~d~~f~~~v~~s~ 233 (682)
T COG1770 192 RLDENHRPD-------------------------------KVWRHRLGTPGSSDELVYE-------EKDDRFFLSVGRSR 233 (682)
T ss_pred EEcCCCCcc-------------------------------eEEEEecCCCCCcceEEEE-------cCCCcEEEEeeecc
Confidence 987664221 222222222 22222211 12333444555566
Q ss_pred CCeEEEEEEeecCceEEEEEEECCCC--ceEEEEEeccC-ceeecccccccCCCCccccCCeEEEEeccCC-ceEEEEEe
Q 004067 324 GNILTAQVLNRSQTKLKVLKFDIKTG--QRKVILVEELD-SWVNLHDCFTPLDKGVTKYSGGFIWASEKTG-FRHLYLHD 399 (776)
Q Consensus 324 Dg~~l~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g-~~~l~~~~ 399 (776)
..++|++..+. ....++++++.+.. +++.+...... .+. . -.-++.+++.++.+| ...|+...
T Consensus 234 s~~yi~i~~~~-~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~-------~-----eh~~d~f~i~sN~~gknf~l~~ap 300 (682)
T COG1770 234 SEAYIVISLGS-HITSEVRLLDADDPEAEPKVVLPRENGVEYS-------V-----EHGGDRFYILSNADGKNFKLVRAP 300 (682)
T ss_pred CCceEEEEcCC-CcceeEEEEecCCCCCceEEEEEcCCCcEEe-------e-----eecCcEEEEEecCCCcceEEEEcc
Confidence 77777666533 35678888888654 44666554322 121 1 111455777787777 55677665
Q ss_pred C--CCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC--CeEEE--EEc
Q 004067 400 I--NGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK--GKHVA--VLD 473 (776)
Q Consensus 400 ~--~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~--~~~~~--~~s 473 (776)
. +-...+.+..+...+. +..++--.++|+..-...+- -.++..+.. +|. ...|.-.. ..... .-.
T Consensus 301 ~~~~~~~w~~~I~h~~~~~-l~~~~~f~~~lVl~eR~~gl--p~v~v~~~~-~~~-----~~~i~f~~~ay~~~l~~~~e 371 (682)
T COG1770 301 VSADKSNWRELIPHREDVR-LEGVDLFADHLVLLERQEGL--PRVVVRDRK-TGE-----ERGIAFDDEAYSAGLSGNPE 371 (682)
T ss_pred CCCChhcCeeeeccCCCce-eeeeeeeccEEEEEecccCC--ceEEEEecC-CCc-----eeeEEecchhhhccccCCCC
Confidence 5 1122333433322211 22234445666666555443 355555553 232 22233222 22222 444
Q ss_pred CCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCC
Q 004067 474 HNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPP 553 (776)
Q Consensus 474 pdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~ 553 (776)
++...|.+.++++++|.+++-+|+.+++.+. | ...+....+++.+. ..+.+..+..||++++..++.-++. .-+++
T Consensus 372 ~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~-L-kqqeV~~g~dp~~Y-~s~riwa~a~dgv~VPVSLvyrkd~-~~~g~ 447 (682)
T COG1770 372 FDSDRLRYSYSSMTTPATLFDYDMATGERTL-L-KQQEVPGGFDPEDY-VSRRIWATADDGVQVPVSLVYRKDT-KLDGS 447 (682)
T ss_pred CCCccEEEEeecccccceeEEeeccCCcEEE-E-EeccCCCCCChhHe-EEEEEEEEcCCCcEeeEEEEEeccc-CCCCC
Confidence 5788999999999999999999999998533 3 33333333555555 5677888878999999999887663 23367
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|++|+.+|..+... . +.+....-.|..+||+......||.|.-|+.|.+..........+.|++++.++|+++.
T Consensus 448 ~p~lLygYGaYG~s~-~----p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g 522 (682)
T COG1770 448 APLLLYGYGAYGISM-D----PSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEG 522 (682)
T ss_pred CcEEEEEeccccccC-C----cCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcC
Confidence 899999999766543 2 23333345688999999999999999999999988877777788999999999999999
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---------ccccccccccCCCCCCc---cchhcCC
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------YDTFYTEKYMGLPSEDP---VGYEYSS 701 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~~ 701 (776)
+.+.++|+++|.|+||+++..++.+.|++|+++|+..|+.|... ....|.|| |.|. ++ +.+..++
T Consensus 523 ~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EW--GNP~-d~e~y~yikSYS 599 (682)
T COG1770 523 YTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEW--GNPL-DPEYYDYIKSYS 599 (682)
T ss_pred cCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhh--CCcC-CHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999987421 11223333 5555 33 3446778
Q ss_pred hhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCCCCe---EEEEecCCCCCC-CCCCcHHHHHHHHHHHHHH
Q 004067 702 VMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPY---EILIFPDERHMP-RRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 702 ~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~---~~~~~~~~~H~~-~~~~~~~~~~~~~~~fl~~ 774 (776)
|.+.+..-. +|+|++.|..|..|.+.+..+..++|++.+... -+.+--.+||.- +..-...+-.+.-.+|+.+
T Consensus 600 PYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee~A~eYaF~l~ 677 (682)
T COG1770 600 PYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLK 677 (682)
T ss_pred chhccccCCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCCCCchHHHHHHHHHHHHHhh
Confidence 888776643 689999999999999999999999999887543 333334789964 2222223333444455543
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=238.89 Aligned_cols=198 Identities=36% Similarity=0.541 Sum_probs=173.4
Q ss_pred hhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 579 ~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
...++|+++||+|+.+|+||++++|..|.......++..+++|+.+++++++++..+|++||+|+|+|+||++++.++.+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 35788999999999999999999999999988888888899999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCCCCCccccccc---ccc-ccc--CCCCCCccchhcCChhhhhcc--CCCcEEEEecCCCCccChHHHH
Q 004067 659 FPDVFQCAVSGAPVTSWDGYDTF---YTE-KYM--GLPSEDPVGYEYSSVMHHVHK--MKGKLLLVHGMIDENVHFRHTA 730 (776)
Q Consensus 659 ~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~--~~~~~~~~~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~~~~~ 730 (776)
+|++|+++++.+|+.++..+... +.. ++. +.++...+.|...+++..+.+ +++|+|++||++|.+||+.++.
T Consensus 85 ~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~ 164 (213)
T PF00326_consen 85 HPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPSQSL 164 (213)
T ss_dssp TCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTHHHH
T ss_pred cceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHHHHH
Confidence 99999999999999987654322 322 222 445556677888888888888 8899999999999999999999
Q ss_pred HHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 731 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 731 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+++++|++.+++++++++|+++|.+...+...+....+.+||+++|
T Consensus 165 ~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l 210 (213)
T PF00326_consen 165 RLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYL 210 (213)
T ss_dssp HHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998878888899999999999986
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=213.39 Aligned_cols=293 Identities=19% Similarity=0.236 Sum_probs=236.9
Q ss_pred EEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCC
Q 004067 470 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRY 549 (776)
Q Consensus 470 ~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~ 549 (776)
.+-+.||..+.+...+...|+.+++.+..+++ .+.+-. ...+|+...+ ++++...++.||.+|+++++. ++..
T Consensus 345 ~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e-Le~ik~---~p~~FDa~~~-~veQ~~atSkDGT~IPYFiv~-K~~~- 417 (648)
T COG1505 345 GSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE-LEVIRE---QPVQFDADNY-EVEQFFATSKDGTRIPYFIVR-KGAK- 417 (648)
T ss_pred ccCCCCCcEEEEEeecccCCCceEEEecCCce-ehhhhh---ccCCcCccCc-eEEEEEEEcCCCccccEEEEe-cCCc-
Confidence 36667899999999999999999999986664 333322 2235655555 778888888999999999998 5532
Q ss_pred CCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHH
Q 004067 550 GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 629 (776)
Q Consensus 550 ~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l 629 (776)
. .+.|++|+-+||...... +.+......+.++|.+.+..+.||.|++|..|+.+....-.+..++|+.++++.|
T Consensus 418 ~-d~~pTll~aYGGF~vslt-----P~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedL 491 (648)
T COG1505 418 K-DENPTLLYAYGGFNISLT-----PRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDL 491 (648)
T ss_pred C-CCCceEEEeccccccccC-----CccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 1 267999999998665442 2333445677889999999999999999999999888777778899999999999
Q ss_pred HHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc-----ccccccCCCCC--CccchhcCCh
Q 004067 630 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-----YTEKYMGLPSE--DPVGYEYSSV 702 (776)
Q Consensus 630 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~ 702 (776)
+++++..+++++|.|.|-||.++..++.++|+.|.|+|+..|+.||..|..+ |...| |.|.. +.....+++|
T Consensus 492 i~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EY-G~Pd~P~d~~~l~~YSP 570 (648)
T COG1505 492 IKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEY-GNPDDPEDRAFLLAYSP 570 (648)
T ss_pred HHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhc-CCCCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999877543 23333 44432 2345678899
Q ss_pred hhhhccCC--CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH-HHHHHHHHHHHHHhC
Q 004067 703 MHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR-IYMEERIWEFIERTL 776 (776)
Q Consensus 703 ~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~-~~~~~~~~~fl~~~l 776 (776)
.++++.-+ +|+||..+.+|++|+|.++..++.+|++.+.++-+.+--++||.-..+... ......+..||.+.|
T Consensus 571 y~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 571 YHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred hhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 88887643 799999999999999999999999999999988888888999987555444 567788889998875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=223.57 Aligned_cols=255 Identities=18% Similarity=0.201 Sum_probs=191.5
Q ss_pred CEEEEEeCCC-CcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe
Q 004067 67 NLITYLLSPD-HSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP 145 (776)
Q Consensus 67 ~~ia~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~ 145 (776)
++|||+.... +....+||++|.+|++.++++... ..+..+.||| ||++|+|.
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~------------------------~~~~~p~wSP---DG~~la~~ 216 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP------------------------QPLMSPAWSP---DGSKLAYV 216 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCC------------------------CceeeeEEcC---CCCEEEEE
Confidence 7899998743 233569999999999999998632 2467899999 99999986
Q ss_pred ----CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecC
Q 004067 146 ----LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 146 ----~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
...+||++|+.+|+.+ .++..+.. ...+.|||||++|+|+.. .+||++++++++.++++.....
T Consensus 217 s~~~g~~~i~i~dl~~G~~~-~l~~~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~------ 288 (429)
T PRK03629 217 TFESGRSALVIQTLANGAVR-QVASFPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN------ 288 (429)
T ss_pred EecCCCcEEEEEECCCCCeE-EccCCCCC-cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCC------
Confidence 2357999999999888 77765543 567999999999999864 2699999999999998765421
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
...+.|||||++|+|.+.+.+ ..+||++|+++++.
T Consensus 289 ------------~~~~~wSPDG~~I~f~s~~~g---------------------------------~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 289 ------------NTEPTWFPDSQNLAYTSDQAG---------------------------------RPQVYKVNINGGAP 323 (429)
T ss_pred ------------cCceEECCCCCEEEEEeCCCC---------------------------------CceEEEEECCCCCe
Confidence 336789999999999874321 14689999999988
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCcc
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVT 377 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (776)
++++. .......+.|||||+.|++..... ....|+++|+++++.+.++... ....+.|+|
T Consensus 324 ~~lt~---------~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~Lt~~~----~~~~p~~Sp------ 383 (429)
T PRK03629 324 QRITW---------EGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLTDTF----LDETPSIAP------ 383 (429)
T ss_pred EEeec---------CCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEEeCCCC----CCCCceECC------
Confidence 87743 223345689999999888876544 3567999999999988887431 112233333
Q ss_pred ccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 378 KYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 378 ~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
++..++|.+...+...|++++++|+..++|+.++..+..+ .|||
T Consensus 384 -DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p-~Wsp 427 (429)
T PRK03629 384 -NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP-AWSP 427 (429)
T ss_pred -CCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCc-ccCC
Confidence 4455888887777778999999999888898655444444 3775
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=222.87 Aligned_cols=265 Identities=14% Similarity=0.128 Sum_probs=188.4
Q ss_pred ceeEcCCCCEEEEEeCCCCc----CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 59 SIGFSPDDNLITYLLSPDHS----LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+.++ +++|||+....+. ....||++|.+|+++++||... .....+.|||
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~------------------------~~~~sP~wSP 194 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEH------------------------SLSITPTWMH 194 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCC------------------------CCcccceEcc
Confidence 34445 8999999874321 2458999999999999999632 2356789999
Q ss_pred cCCCceEEE--Ee----CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEE--ecCC---
Q 004067 135 TSSKKKIIM--VP----LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVL--NLLI--- 199 (776)
Q Consensus 135 ~~~dg~~l~--~~----~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~--~l~~--- 199 (776)
||+.++ |. ...+||++++++++.+ +++..++. ...|+|||||++|||+++. ++|+. ++++
T Consensus 195 ---DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~-~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 195 ---IGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGN-QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred ---CCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCC-ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 998744 33 2357999999999988 88876654 6679999999999999853 67774 5554
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
|+.++++..... ....+.|||||++|+|.+...+
T Consensus 270 g~~~~lt~~~~~-----------------~~~~p~wSPDG~~Laf~s~~~g----------------------------- 303 (428)
T PRK01029 270 GKPRRLLNEAFG-----------------TQGNPSFSPDGTRLVFVSNKDG----------------------------- 303 (428)
T ss_pred CcceEeecCCCC-----------------CcCCeEECCCCCEEEEEECCCC-----------------------------
Confidence 466777754321 0235789999999999874321
Q ss_pred CCCCeEEEEEEEcCC--CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 280 ASNVKVRLGVVSAAG--GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..+||++++++ ++.+.++ .....+..+.|||||+.|++...+. +...|++||+++|+.+.++..
T Consensus 304 ----~~~ly~~~~~~~g~~~~~lt---------~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 304 ----RPRIYIMQIDPEGQSPRLLT---------KKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred ----CceEEEEECcccccceEEec---------cCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCCCeEEccCC
Confidence 14578887753 4455553 2234556799999999998886544 456899999999999988754
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCC
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEAS 425 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg 425 (776)
... ...+.|+| ++..++|.+...+...||++++++++.++|+.....+.. +.|||-.
T Consensus 370 ~~~---~~~p~wSp-------DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~-p~Ws~~~ 426 (428)
T PRK01029 370 PEN---KESPSWAI-------DSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRF-PSWGAFP 426 (428)
T ss_pred CCC---ccceEECC-------CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccC-ceecCCC
Confidence 211 11122322 345588888777788999999999999999876544444 3487643
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=205.95 Aligned_cols=295 Identities=17% Similarity=0.213 Sum_probs=218.6
Q ss_pred cCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCC-chhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCC
Q 004067 473 DHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPL-TVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGP 551 (776)
Q Consensus 473 spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~ 551 (776)
.-+.+.+.|..++.-.|+.||.+|+..|.....++++.. ..+.++.-.. ..+++.+++.||..++..|+.-+.. ...
T Consensus 390 ~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y-~~~r~~~~SkDGt~VPM~Iv~kk~~-k~d 467 (712)
T KOG2237|consen 390 DFKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDY-VVERIEVSSKDGTKVPMFIVYKKDI-KLD 467 (712)
T ss_pred CCCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccce-EEEEEEEecCCCCccceEEEEechh-hhc
Confidence 456778999999999999999999998844333332211 1233433333 5788999999999999999984332 333
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
++.|++|+.||+.+.. +...|... ...|.+.|++.+..|.||.|+.|..|...+.....+..++|+++++++|++
T Consensus 468 g~~P~LLygYGay~is-l~p~f~~s----rl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve 542 (712)
T KOG2237|consen 468 GSKPLLLYGYGAYGIS-LDPSFRAS----RLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVE 542 (712)
T ss_pred CCCceEEEEeccccee-eccccccc----eeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHH
Confidence 5789999999986654 34455433 234556999999999999999999999888777777889999999999999
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc-----cccccc--cCCCCCCccchhcCChhh
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-----FYTEKY--MGLPSEDPVGYEYSSVMH 704 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~ 704 (776)
+++..++++++.|.|.||.++..++.++|++|+|+++..|+.|+..+.. .+...| .+.|. +...+...+++.
T Consensus 543 ~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~-~~~~~~~i~~y~ 621 (712)
T KOG2237|consen 543 NGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPE-DFEDLIKISPYS 621 (712)
T ss_pred cCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChh-hhhhhheecccC
Confidence 9999999999999999999999999999999999999999998654321 122221 13333 223333444444
Q ss_pred hhccCC-----CcEEEEecCCCCccChHHHHHHHHHHHHCC-------CCeEEEEecCCCCCCCCC-CcHHHHHHHHHHH
Q 004067 705 HVHKMK-----GKLLLVHGMIDENVHFRHTARLINALVAAR-------KPYEILIFPDERHMPRRH-RDRIYMEERIWEF 771 (776)
Q Consensus 705 ~~~~i~-----~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~f 771 (776)
.+.+++ +-||+..+.+|++|.+.++..+.++|+..- .++-+.+..++||....+ ....+-.+...+|
T Consensus 622 pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaF 701 (712)
T KOG2237|consen 622 PVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAF 701 (712)
T ss_pred ccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHH
Confidence 444443 468999999999999999999998887642 357788889999987432 2234455667777
Q ss_pred HHHh
Q 004067 772 IERT 775 (776)
Q Consensus 772 l~~~ 775 (776)
|.+.
T Consensus 702 l~K~ 705 (712)
T KOG2237|consen 702 LAKM 705 (712)
T ss_pred HHHH
Confidence 7664
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=222.89 Aligned_cols=255 Identities=14% Similarity=0.155 Sum_probs=189.1
Q ss_pred CCEEEEEeCCCCc--CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 66 DNLITYLLSPDHS--LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 66 G~~ia~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
..+|||++...+. ...+||++|.+|++.++++.+. ..+..+.||| ||++|+
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~------------------------~~v~~p~wSp---DG~~la 217 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGS------------------------SLVLTPRFSP---NRQEIT 217 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCC------------------------CCeEeeEECC---CCCEEE
Confidence 4589999875442 2469999999999999998643 2578899999 999999
Q ss_pred EeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCcee
Q 004067 144 VPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 144 ~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
|.. +.+||+||+.+++.+ .++..++ ....+.|||||+.|+|... .+||++++++++.++|+.....
T Consensus 218 y~s~~~g~~~i~~~dl~~g~~~-~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~---- 291 (435)
T PRK05137 218 YMSYANGRPRVYLLDLETGQRE-LVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAI---- 291 (435)
T ss_pred EEEecCCCCEEEEEECCCCcEE-EeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCc----
Confidence 973 357999999999888 7776554 3678999999999999864 3699999999999999864421
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
...+.|||||++|+|.+...+ ..+||++|++++
T Consensus 292 --------------~~~~~~spDG~~i~f~s~~~g---------------------------------~~~Iy~~d~~g~ 324 (435)
T PRK05137 292 --------------DTSPSYSPDGSQIVFESDRSG---------------------------------SPQLYVMNADGS 324 (435)
T ss_pred --------------cCceeEcCCCCEEEEEECCCC---------------------------------CCeEEEEECCCC
Confidence 235789999999999874321 146899999999
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
+.+.++. .......+.|||||+.|++..... ....|+++|++++..+.++... ....+.|+|
T Consensus 325 ~~~~lt~---------~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~~~lt~~~----~~~~p~~sp---- 386 (435)
T PRK05137 325 NPRRISF---------GGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGERILTSGF----LVEGPTWAP---- 386 (435)
T ss_pred CeEEeec---------CCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCceEeccCCC----CCCCCeECC----
Confidence 8888843 233455689999999888876433 4578999999888777665421 112223333
Q ss_pred ccccCCeEEEEeccCCc---eEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 376 VTKYSGGFIWASEKTGF---RHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~---~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
+++.++|.++..+. ..||++++++++.++|+.. ..+..+ .|||
T Consensus 387 ---DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~-~~~~~p-~Wsp 432 (435)
T PRK05137 387 ---NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTP-GDASDP-AWSP 432 (435)
T ss_pred ---CCCEEEEEEccCCCCCcceEEEEECCCCceEEccCC-CCccCc-ccCC
Confidence 34557887766554 6899999999988888753 233333 4765
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=220.90 Aligned_cols=210 Identities=17% Similarity=0.190 Sum_probs=158.9
Q ss_pred CceeEcCCCCE--EEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 58 TSIGFSPDDNL--ITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 58 ~~~~~SpDG~~--ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+|+|||||+. ++|++...+ ..+||++++++|+.++|+..+. ....+.|||
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g--~~~I~~~~l~~g~~~~lt~~~g------------------------~~~~p~wSP- 240 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLG--VPKIFLGSLENPAGKKILALQG------------------------NQLMPTFSP- 240 (428)
T ss_pred ccceEccCCCceEEEEEEccCC--CceEEEEECCCCCceEeecCCC------------------------CccceEECC-
Confidence 68999999988 566887654 4799999999999999986433 345689999
Q ss_pred CCCceEEEEeCC----CcEEE--EeCCC---CccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCC--C
Q 004067 136 SSKKKIIMVPLP----DGIYF--QDLSC---SKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLI--N 200 (776)
Q Consensus 136 ~~dg~~l~~~~~----~~l~~--~d~~~---~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~--g 200 (776)
||++|+|..+ .++|+ +++++ ++.+ +++.........|.|||||++|+|+++. +||++++++ +
T Consensus 241 --DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~-~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 241 --RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPR-RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred --CCCEEEEEECCCCCcceeEEEeecccCCCCcce-EeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 9999999853 36777 46654 4555 6765433335679999999999999852 699998863 5
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
..++++..... ...+.|||||++|+|.+.+.+
T Consensus 318 ~~~~lt~~~~~------------------~~~p~wSPDG~~Laf~~~~~g------------------------------ 349 (428)
T PRK01029 318 SPRLLTKKYRN------------------SSCPAWSPDGKKIAFCSVIKG------------------------------ 349 (428)
T ss_pred ceEEeccCCCC------------------ccceeECCCCCEEEEEEcCCC------------------------------
Confidence 56777754321 236789999999999874321
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 358 (776)
..+|+++|+++++.+.++. .......+.|||||+.|++..... ....||++|+++++.+.++...
T Consensus 350 ---~~~I~v~dl~~g~~~~Lt~---------~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g~~~~Lt~~~ 414 (428)
T PRK01029 350 ---VRQICVYDLATGRDYQLTT---------SPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITKKTRKIVIGS 414 (428)
T ss_pred ---CcEEEEEECCCCCeEEccC---------CCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCCEEEeecCC
Confidence 1568999999999888743 223456799999999888876544 4578999999999998888643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=215.27 Aligned_cols=210 Identities=10% Similarity=0.104 Sum_probs=163.1
Q ss_pred CceeEcCCCCE-EEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNL-ITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~-ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
..|+|||||++ ++|.+...+ ..+||++|+++|+.++|+..+. ....+.|||
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~--~~~Iyv~dl~tg~~~~lt~~~g------------------------~~~~~~~SP-- 242 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGER--KPTLYKYNLYTGKKEKIASSQG------------------------MLVVSDVSK-- 242 (419)
T ss_pred EeEEECCCCCcEEEEEEccCC--CCEEEEEECCCCcEEEEecCCC------------------------cEEeeEECC--
Confidence 58999999997 666666432 3699999999999999986322 345688999
Q ss_pred CCceEEEEeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeC
Q 004067 137 SKKKIIMVPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 137 ~dg~~l~~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~ 208 (776)
||++|+|.. +.+||++|+++++.+ +||..+. ....+.|||||++|+|+++. +||++++++|+.++++..
T Consensus 243 -DG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 243 -DGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred -CCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 999999973 367999999999988 8887664 35679999999999999975 899999999999999875
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
+.. ...|||||+.|+|........ ......+|+
T Consensus 320 g~~--------------------~~~~SPDG~~Ia~~~~~~~~~---------------------------~~~~~~~I~ 352 (419)
T PRK04043 320 GKN--------------------NSSVSTYKNYIVYSSRETNNE---------------------------FGKNTFNLY 352 (419)
T ss_pred CCc--------------------CceECCCCCEEEEEEcCCCcc---------------------------cCCCCcEEE
Confidence 421 236999999999987432110 000126799
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
++|+++++.+.|+. . .....++|||||+.|++....+ ....|+++++++....++..
T Consensus 353 v~d~~~g~~~~LT~---------~-~~~~~p~~SPDG~~I~f~~~~~-~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 353 LISTNSDYIRRLTA---------N-GVNQFPRFSSDGGSIMFIKYLG-NQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EEECCCCCeEECCC---------C-CCcCCeEECCCCCEEEEEEccC-CcEEEEEEecCCCeeEEeec
Confidence 99999999888743 1 1233599999999998887664 66789999998877777754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=218.70 Aligned_cols=256 Identities=19% Similarity=0.216 Sum_probs=188.9
Q ss_pred CCEEEEEeCCCC--cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 66 DNLITYLLSPDH--SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 66 G~~ia~~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
+.+|||+..... ....+||++|.++++.++++.+. ..+..+.||| ||++|+
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~------------------------~~v~~p~wSp---Dg~~la 219 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSA------------------------EPILSPAWSP---DGKKLA 219 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCC------------------------CccccccCCC---CCCEEE
Confidence 457999876322 22458999999999999998642 2567889999 999999
Q ss_pred EeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCcee
Q 004067 144 VPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 144 ~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
|.. ..+||++|+.+++.+ .++..++ ....++|||||++|+|+.. .+||++++++|+.++++.....
T Consensus 220 ~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~---- 293 (433)
T PRK04922 220 YVSFERGRSAIYVQDLATGQRE-LVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGI---- 293 (433)
T ss_pred EEecCCCCcEEEEEECCCCCEE-EeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCC----
Confidence 973 346999999999887 7765543 3567999999999999863 2699999999999888764321
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
...+.|||||++|+|.+...+ ..+||+++++++
T Consensus 294 --------------~~~~~~spDG~~l~f~sd~~g---------------------------------~~~iy~~dl~~g 326 (433)
T PRK04922 294 --------------DTEPTWAPDGKSIYFTSDRGG---------------------------------RPQIYRVAASGG 326 (433)
T ss_pred --------------ccceEECCCCCEEEEEECCCC---------------------------------CceEEEEECCCC
Confidence 235789999999999874321 146899999999
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
+.+.++. ...+...++|||||+.|++.... .+...|++||++++..+.++... + ...+.|+
T Consensus 327 ~~~~lt~---------~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~~---~-~~~p~~s----- 387 (433)
T PRK04922 327 SAERLTF---------QGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPGS---L-DESPSFA----- 387 (433)
T ss_pred CeEEeec---------CCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCCC---C-CCCceEC-----
Confidence 8887743 22334468999999988887643 34568999999999988776432 1 1122233
Q ss_pred ccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 376 VTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
.++..++|.++..|...||+++++|+..++|+.+...+..+ .|||
T Consensus 388 --pdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p-~wsp 432 (433)
T PRK04922 388 --PNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREP-AWSP 432 (433)
T ss_pred --CCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCC-ccCC
Confidence 34455888888888889999999998888887654434433 3665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=216.50 Aligned_cols=253 Identities=16% Similarity=0.180 Sum_probs=187.0
Q ss_pred CEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEeC
Q 004067 67 NLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPL 146 (776)
Q Consensus 67 ~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~ 146 (776)
.+|||++...+ ..+||++|.++...++++... ..+..+.||| ||++|+|..
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~------------------------~~v~~p~wSP---DG~~la~~s 214 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSP------------------------EPIISPAWSP---DGTKLAYVS 214 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCC------------------------CCcccceEcC---CCCEEEEEE
Confidence 57999986433 468999999998888887532 2567889999 999999973
Q ss_pred ----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCC
Q 004067 147 ----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGL 218 (776)
Q Consensus 147 ----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~ 218 (776)
..+||++|+.+++.+ .++..+. ....+.|||||++|+|... .+||+++++++..++++.....
T Consensus 215 ~~~~~~~I~~~dl~~g~~~-~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~------- 285 (427)
T PRK02889 215 FESKKPVVYVHDLATGRRR-VVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGI------- 285 (427)
T ss_pred ccCCCcEEEEEECCCCCEE-EeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCC-------
Confidence 245999999999887 7765553 3678999999999999764 2699999999988888764321
Q ss_pred cccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE
Q 004067 219 AEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS 298 (776)
Q Consensus 219 ~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 298 (776)
...+.|||||++|+|.+...+. .+||++++++++..
T Consensus 286 -----------~~~~~wSpDG~~l~f~s~~~g~---------------------------------~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 286 -----------DTEPFFSPDGRSIYFTSDRGGA---------------------------------PQIYRMPASGGAAQ 321 (427)
T ss_pred -----------CcCeEEcCCCCEEEEEecCCCC---------------------------------cEEEEEECCCCceE
Confidence 2356799999999998643211 46889999888877
Q ss_pred EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccc
Q 004067 299 WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTK 378 (776)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (776)
.+... ..+...++|||||+.|++.+..+ ....|+++|+++++.+.++... + ...+.|+ .
T Consensus 322 ~lt~~---------g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~~---~-~~~p~~s-------p 380 (427)
T PRK02889 322 RVTFT---------GSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATGQVTALTDTT---R-DESPSFA-------P 380 (427)
T ss_pred EEecC---------CCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCCCeEEccCCC---C-ccCceEC-------C
Confidence 77532 22344689999999998886554 4568999999999988887532 1 1122233 3
Q ss_pred cCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 379 YSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 379 ~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
++..++|.++..|...||.++++|+..+.++.....+..+ .|||
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p-~wsp 424 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREP-SWGP 424 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCC-ccCC
Confidence 4555888888888889999999988777776543333333 4765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=213.32 Aligned_cols=243 Identities=11% Similarity=0.045 Sum_probs=182.1
Q ss_pred CEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceE-EEEe
Q 004067 67 NLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKI-IMVP 145 (776)
Q Consensus 67 ~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~-l~~~ 145 (776)
.+|+|++...+....+||++|.+|.+.++++.. .....+.||| ||++ ++|.
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-------------------------~~~~~p~wSp---DG~~~i~y~ 206 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-------------------------GLNIFPKWAN---KEQTAFYYT 206 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccC-------------------------CCeEeEEECC---CCCcEEEEE
Confidence 467777763333357999999999998888851 2345789999 9996 6664
Q ss_pred ----CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecC
Q 004067 146 ----LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 146 ----~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
...+||++|+.+++.+ +++..++ ....+.|||||++|+|... .+||++++++|+.++||.....
T Consensus 207 s~~~~~~~Iyv~dl~tg~~~-~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~------ 278 (419)
T PRK04043 207 SYGERKPTLYKYNLYTGKKE-KIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGI------ 278 (419)
T ss_pred EccCCCCEEEEEECCCCcEE-EEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCc------
Confidence 2457999999999998 8876544 3567899999999999875 4799999999999999865431
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
...+.|||||++|+|.+...+ ..+||++|+++|+.
T Consensus 279 ------------d~~p~~SPDG~~I~F~Sdr~g---------------------------------~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 279 ------------DVNGNFVEDDKRIVFVSDRLG---------------------------------YPNIFMKKLNSGSV 313 (419)
T ss_pred ------------cCccEECCCCCEEEEEECCCC---------------------------------CceEEEEECCCCCe
Confidence 124579999999999884321 15799999999998
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC-----ceEEEEEEECCCCceEEEEEeccCceeecccccccC
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-----TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 372 (776)
+++... ... .+.|||||+.|++...... ...+|+++|+++|+.+.|+.... ...+.|+|
T Consensus 314 ~rlt~~---------g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~----~~~p~~SP- 377 (419)
T PRK04043 314 EQVVFH---------GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV----NQFPRFSS- 377 (419)
T ss_pred EeCccC---------CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC----cCCeEECC-
Confidence 877431 111 3589999998888876542 23689999999999999887421 11233433
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
++..++|++...+...|+.++++|....+|....
T Consensus 378 ------DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~ 411 (419)
T PRK04043 378 ------DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKV 411 (419)
T ss_pred ------CCCEEEEEEccCCcEEEEEEecCCCeeEEeecCC
Confidence 4555888888888889999999998887776543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=215.99 Aligned_cols=255 Identities=18% Similarity=0.230 Sum_probs=188.2
Q ss_pred CEEEEEeCCCCc-CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe
Q 004067 67 NLITYLLSPDHS-LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP 145 (776)
Q Consensus 67 ~~ia~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~ 145 (776)
.+|||+....+. ...+||++|.+|.+.++++..+. .+..+.||| ||++|+|.
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~------------------------~~~~p~wSP---DG~~La~~ 235 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPE------------------------PLMSPAWSP---DGRKLAYV 235 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCC------------------------cccCceECC---CCCEEEEE
Confidence 478888764432 24589999999999888886432 566889999 99999997
Q ss_pred C----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecC
Q 004067 146 L----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 146 ~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
. ..+||++|+.+++.+ .++..+.. ...+.|||||+.|+|+.+. +||++++++++.++++.....
T Consensus 236 s~~~g~~~L~~~dl~tg~~~-~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~------ 307 (448)
T PRK04792 236 SFENRKAEIFVQDIYTQVRE-KVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAI------ 307 (448)
T ss_pred EecCCCcEEEEEECCCCCeE-EecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCC------
Confidence 3 236999999999887 77665432 5679999999999998642 599999999999988764321
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
...+.|||||++|+|.+...+ ..+||++|+++++.
T Consensus 308 ------------~~~p~wSpDG~~I~f~s~~~g---------------------------------~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 308 ------------DTEPSWHPDGKSLIFTSERGG---------------------------------KPQIYRVNLASGKV 342 (448)
T ss_pred ------------ccceEECCCCCEEEEEECCCC---------------------------------CceEEEEECCCCCE
Confidence 235789999999999874221 15789999999998
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCcc
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVT 377 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (776)
+.++.. ......++|||||+.|++..... ....|+++|+++++.+.++... + +..+.|+
T Consensus 343 ~~Lt~~---------g~~~~~~~~SpDG~~l~~~~~~~-g~~~I~~~dl~~g~~~~lt~~~---~-d~~ps~s------- 401 (448)
T PRK04792 343 SRLTFE---------GEQNLGGSITPDGRSMIMVNRTN-GKFNIARQDLETGAMQVLTSTR---L-DESPSVA------- 401 (448)
T ss_pred EEEecC---------CCCCcCeeECCCCCEEEEEEecC-CceEEEEEECCCCCeEEccCCC---C-CCCceEC-------
Confidence 887531 12234579999999888876543 4568999999999988876432 1 1122233
Q ss_pred ccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 378 KYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 378 ~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
.++..++|.+..+|...||+++++|+..+.++.....+..+ .|||
T Consensus 402 pdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p-~Wsp 446 (448)
T PRK04792 402 PNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSP-AWSP 446 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCC-ccCC
Confidence 34556888888888889999999998888887654333333 4765
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=213.13 Aligned_cols=244 Identities=17% Similarity=0.174 Sum_probs=181.2
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.+||++|.+++..+ .++.+.. .+..|+|||||++|+|++. .+||++++.+|+.++++.....
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~-~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~------------ 244 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH------------ 244 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCC-ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC------------
Confidence 37999999999888 7777654 4789999999999999863 3699999999999888754332
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...+.|||||++|+|.....+ ..+||+||+++++.++++
T Consensus 245 ------~~~~~~SPDG~~La~~~~~~g---------------------------------~~~I~~~d~~tg~~~~lt-- 283 (429)
T PRK03629 245 ------NGAPAFSPDGSKLAFALSKTG---------------------------------SLNLYVMDLASGQIRQVT-- 283 (429)
T ss_pred ------cCCeEECCCCCEEEEEEcCCC---------------------------------CcEEEEEECCCCCEEEcc--
Confidence 235789999999999763211 146899999999988773
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
.....+..+.|||||+.|++.+++. ....||++|+++++.++++...... ....| +.+++.+
T Consensus 284 -------~~~~~~~~~~wSPDG~~I~f~s~~~-g~~~Iy~~d~~~g~~~~lt~~~~~~---~~~~~-------SpDG~~I 345 (429)
T PRK03629 284 -------DGRSNNTEPTWFPDSQNLAYTSDQA-GRPQVYKVNINGGAPQRITWEGSQN---QDADV-------SSDGKFM 345 (429)
T ss_pred -------CCCCCcCceEECCCCCEEEEEeCCC-CCceEEEEECCCCCeEEeecCCCCc---cCEEE-------CCCCCEE
Confidence 2334567799999999999988765 3468999999999888886532211 11122 3345567
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
++.+..++..+||++++++++.++|+... .... +.|||||+.|+|.+...+. ..|+.+++ +|. ..++|+.
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~~~~-p~~SpDG~~i~~~s~~~~~--~~l~~~~~--~G~----~~~~l~~ 415 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDTF-LDET-PSIAPNGTMVIYSSSQGMG--SVLNLVST--DGR----FKARLPA 415 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCCC-CCCC-ceECCCCCEEEEEEcCCCc--eEEEEEEC--CCC----CeEECcc
Confidence 88777777789999999999999998643 2233 4599999999999886543 57888888 564 5666765
Q ss_pred CCC-eEEEEEcC
Q 004067 464 GKG-KHVAVLDH 474 (776)
Q Consensus 464 ~~~-~~~~~~sp 474 (776)
..+ +..++|||
T Consensus 416 ~~~~~~~p~Wsp 427 (429)
T PRK03629 416 TDGQVKFPAWSP 427 (429)
T ss_pred CCCCcCCcccCC
Confidence 443 45667776
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=213.99 Aligned_cols=246 Identities=11% Similarity=0.103 Sum_probs=180.9
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.+||++|.+++..+ .++.+.. .+..|.|||||++|+|++. .+||++++.+|+.++++.....
T Consensus 182 ~~l~~~d~dg~~~~-~lt~~~~-~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~------------ 247 (435)
T PRK05137 182 KRLAIMDQDGANVR-YLTDGSS-LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGM------------ 247 (435)
T ss_pred eEEEEECCCCCCcE-EEecCCC-CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCc------------
Confidence 47999999999888 8887654 4889999999999999974 4699999999999888754321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.++++
T Consensus 248 ------~~~~~~SPDG~~la~~~~~~g---------------------------------~~~Iy~~d~~~~~~~~Lt-- 286 (435)
T PRK05137 248 ------TFAPRFSPDGRKVVMSLSQGG---------------------------------NTDIYTMDLRSGTTTRLT-- 286 (435)
T ss_pred ------ccCcEECCCCCEEEEEEecCC---------------------------------CceEEEEECCCCceEEcc--
Confidence 336789999999998764221 156899999999988773
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
........+.|||||+.|++.+++. ....||++|++++..++++..... + ..+.|+| +++.+
T Consensus 287 -------~~~~~~~~~~~spDG~~i~f~s~~~-g~~~Iy~~d~~g~~~~~lt~~~~~-~--~~~~~Sp-------dG~~i 348 (435)
T PRK05137 287 -------DSPAIDTSPSYSPDGSQIVFESDRS-GSPQLYVMNADGSNPRRISFGGGR-Y--STPVWSP-------RGDLI 348 (435)
T ss_pred -------CCCCccCceeEcCCCCEEEEEECCC-CCCeEEEEECCCCCeEEeecCCCc-c--cCeEECC-------CCCEE
Confidence 3334556799999999999887655 356899999999999988764321 1 1122333 45567
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCc-eeeEEEEEeCCCCCCccccceeec
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL-ESHLYCAKLYPDWNHTLEAPVKLT 462 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~-~~~l~~~~~~~~g~~~~~~~~~l~ 462 (776)
+|.+...+..+|++++++++..+.++... .+..+ .|||||+.|+|.+...+.. ...||.+++ +|. ..+.|+
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~~~~lt~~~-~~~~p-~~spDG~~i~~~~~~~~~~~~~~L~~~dl--~g~----~~~~l~ 420 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSGERILTSGF-LVEGP-TWAPNGRVIMFFRQTPGSGGAPKLYTVDL--TGR----NEREVP 420 (435)
T ss_pred EEEEcCCCceEEEEEECCCCceEeccCCC-CCCCC-eECCCCCEEEEEEccCCCCCcceEEEEEC--CCC----ceEEcc
Confidence 88776667789999999988888887643 33344 5999999999998754321 147999998 454 445666
Q ss_pred CCCCeEEEEEcC
Q 004067 463 NGKGKHVAVLDH 474 (776)
Q Consensus 463 ~~~~~~~~~~sp 474 (776)
.......++|||
T Consensus 421 ~~~~~~~p~Wsp 432 (435)
T PRK05137 421 TPGDASDPAWSP 432 (435)
T ss_pred CCCCccCcccCC
Confidence 433345567776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=212.16 Aligned_cols=257 Identities=18% Similarity=0.223 Sum_probs=189.4
Q ss_pred CCCEEEEEeCCCC--cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEE
Q 004067 65 DDNLITYLLSPDH--SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKII 142 (776)
Q Consensus 65 DG~~ia~~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l 142 (776)
-..+|+|++.... ....+|+++|.+|++.++++.+. ..+..+.||| ||++|
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~------------------------~~~~~p~wSp---DG~~l 213 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR------------------------EPILSPRWSP---DGKRI 213 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC------------------------CceeeeeECC---CCCEE
Confidence 4557999875332 22347999999999988888632 2567889999 99999
Q ss_pred EEeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCce
Q 004067 143 MVPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 143 ~~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
+|.. ..+||++|+++++.+ .++...+ ....+.|||||++|+|... .+||++++++++.++++.....
T Consensus 214 a~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~--- 288 (430)
T PRK00178 214 AYVSFEQKRPRIFVQNLDTGRRE-QITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAI--- 288 (430)
T ss_pred EEEEcCCCCCEEEEEECCCCCEE-EccCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCC---
Confidence 9973 246999999999888 7776543 3567999999999999864 2699999999999888764321
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
...+.|||||++|+|.+...+ ..+||++++++
T Consensus 289 ---------------~~~~~~spDg~~i~f~s~~~g---------------------------------~~~iy~~d~~~ 320 (430)
T PRK00178 289 ---------------DTEPFWGKDGRTLYFTSDRGG---------------------------------KPQIYKVNVNG 320 (430)
T ss_pred ---------------cCCeEECCCCCEEEEEECCCC---------------------------------CceEEEEECCC
Confidence 235789999999999874221 14689999999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
++...+... ......+.|||||+.|++..... ....|+++|+++++.+.++... + ...+.|+
T Consensus 321 g~~~~lt~~---------~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~~---~-~~~p~~s---- 382 (430)
T PRK00178 321 GRAERVTFV---------GNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSVRILTDTS---L-DESPSVA---- 382 (430)
T ss_pred CCEEEeecC---------CCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCEEEccCCC---C-CCCceEC----
Confidence 998877432 22345689999999988886544 4567999999999988887531 1 1122333
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
.++..++|++...|...||.++++|+..+.++.....+..+ .|||
T Consensus 383 ---pdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p-~ws~ 427 (430)
T PRK00178 383 ---PNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREP-SWSP 427 (430)
T ss_pred ---CCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCC-ccCC
Confidence 34556888888888889999999988877776544333433 3665
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=193.94 Aligned_cols=213 Identities=14% Similarity=0.106 Sum_probs=154.2
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC-CCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR 602 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~-g~~ 602 (776)
+....+.+.+|..|.+|+..|++. ..++.++||++||..+... .+..++++|+++||+|+.+|+||+ |.|
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~--~~~~~~~vIi~HGf~~~~~-------~~~~~A~~La~~G~~vLrfD~rg~~GeS 79 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKEN--SPKKNNTILIASGFARRMD-------HFAGLAEYLSSNGFHVIRYDSLHHVGLS 79 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCccc--CCCCCCEEEEeCCCCCChH-------HHHHHHHHHHHCCCEEEEecCCCCCCCC
Confidence 445567778999999999999752 1256789999999766432 245568999999999999999987 888
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc-
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF- 681 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~- 681 (776)
+.++...... . ...|+.++++|++++ +..+|+|+||||||.+++.+|... .++++|+.+|+.++..+...
T Consensus 80 ~G~~~~~t~s-~---g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~l~~~ 150 (307)
T PRK13604 80 SGTIDEFTMS-I---GKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDTLERA 150 (307)
T ss_pred CCccccCccc-c---cHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHHHHHh
Confidence 6655322211 1 278999999999886 346899999999999987776643 38999999999885422110
Q ss_pred cccc-----ccCCCC---------CCc---------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 682 YTEK-----YMGLPS---------EDP---------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 682 ~~~~-----~~~~~~---------~~~---------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
.... ....|. ... ......+++..+.+++.|+|++||..|..||+..+.++++++..
T Consensus 151 ~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s 230 (307)
T PRK13604 151 LGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS 230 (307)
T ss_pred hhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc
Confidence 0000 000000 000 00112345577888899999999999999999999999998742
Q ss_pred CCCCeEEEEecCCCCCCC
Q 004067 739 ARKPYEILIFPDERHMPR 756 (776)
Q Consensus 739 ~~~~~~~~~~~~~~H~~~ 756 (776)
.+++++++||++|.+.
T Consensus 231 --~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 231 --EQCKLYSLIGSSHDLG 246 (307)
T ss_pred --CCcEEEEeCCCccccC
Confidence 5789999999999884
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=205.86 Aligned_cols=244 Identities=17% Similarity=0.196 Sum_probs=180.4
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
..|+++|.++...+ .++.... .+..|.|||||++|+|++.. +||++++.+|+.++++.....
T Consensus 198 ~~l~i~d~dG~~~~-~l~~~~~-~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~------------ 263 (448)
T PRK04792 198 YQLMIADYDGYNEQ-MLLRSPE-PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGI------------ 263 (448)
T ss_pred eEEEEEeCCCCCce-EeecCCC-cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCC------------
Confidence 36899999998887 7776654 47889999999999999753 699999999998888754321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.+.++.
T Consensus 264 ------~~~~~wSPDG~~La~~~~~~g---------------------------------~~~Iy~~dl~tg~~~~lt~- 303 (448)
T PRK04792 264 ------NGAPRFSPDGKKLALVLSKDG---------------------------------QPEIYVVDIATKALTRITR- 303 (448)
T ss_pred ------cCCeeECCCCCEEEEEEeCCC---------------------------------CeEEEEEECCCCCeEECcc-
Confidence 235789999999999763221 2579999999999887733
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
.......++|||||+.|++.+++. ...+||++|+++|+.+.++.+.. +. ..+.| +.+++.+
T Consensus 304 --------~~~~~~~p~wSpDG~~I~f~s~~~-g~~~Iy~~dl~~g~~~~Lt~~g~--~~-~~~~~-------SpDG~~l 364 (448)
T PRK04792 304 --------HRAIDTEPSWHPDGKSLIFTSERG-GKPQIYRVNLASGKVSRLTFEGE--QN-LGGSI-------TPDGRSM 364 (448)
T ss_pred --------CCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCCEEEEecCCC--CC-cCeeE-------CCCCCEE
Confidence 334456789999999999887665 34689999999999888864221 11 11223 3345568
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
+|.+...+..+||++++++++.+.|+..... ..+ .|+|||+.|+|.+..++. ..||.+++ +|. ..+.|+.
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d-~~p-s~spdG~~I~~~~~~~g~--~~l~~~~~--~G~----~~~~l~~ 434 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTSTRLD-ESP-SVAPNGTMVIYSTTYQGK--QVLAAVSI--DGR----FKARLPA 434 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCCCCC-CCc-eECCCCCEEEEEEecCCc--eEEEEEEC--CCC----ceEECcC
Confidence 8877777778999999999988888865322 223 599999999999876653 57898888 564 4566765
Q ss_pred CCC-eEEEEEcC
Q 004067 464 GKG-KHVAVLDH 474 (776)
Q Consensus 464 ~~~-~~~~~~sp 474 (776)
..+ ...++|||
T Consensus 435 ~~g~~~~p~Wsp 446 (448)
T PRK04792 435 GQGEVKSPAWSP 446 (448)
T ss_pred CCCCcCCCccCC
Confidence 443 34567776
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-21 Score=204.61 Aligned_cols=244 Identities=16% Similarity=0.167 Sum_probs=178.6
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.+||++|.++...+ .++.... .+..|+|||||++|+|++. .+||++++.+|+.++++.....
T Consensus 176 ~~L~~~D~dG~~~~-~l~~~~~-~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~------------ 241 (427)
T PRK02889 176 YQLQISDADGQNAQ-SALSSPE-PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS------------ 241 (427)
T ss_pred cEEEEECCCCCCce-EeccCCC-CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCC------------
Confidence 46999999888877 7765554 4788999999999999985 3599999999998888743321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.++++
T Consensus 242 ------~~~~~~SPDG~~la~~~~~~g---------------------------------~~~Iy~~d~~~~~~~~lt-- 280 (427)
T PRK02889 242 ------NSAPAWSPDGRTLAVALSRDG---------------------------------NSQIYTVNADGSGLRRLT-- 280 (427)
T ss_pred ------ccceEECCCCCEEEEEEccCC---------------------------------CceEEEEECCCCCcEECC--
Confidence 236789999999998753221 157899999988877763
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
........+.|||||+.|++.+++. ....||.++++++..++++.... +. ..+.|+| +++.+
T Consensus 281 -------~~~~~~~~~~wSpDG~~l~f~s~~~-g~~~Iy~~~~~~g~~~~lt~~g~--~~-~~~~~Sp-------DG~~I 342 (427)
T PRK02889 281 -------QSSGIDTEPFFSPDGRSIYFTSDRG-GAPQIYRMPASGGAAQRVTFTGS--YN-TSPRISP-------DGKLL 342 (427)
T ss_pred -------CCCCCCcCeEEcCCCCEEEEEecCC-CCcEEEEEECCCCceEEEecCCC--Cc-CceEECC-------CCCEE
Confidence 3334456689999999999887765 45689999999988888764321 11 1122333 45567
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
+|.+..++..+|+++++++++.++++..... .. +.|+|||+.|+|.+...+. ..||.+++ +|. ..+.++.
T Consensus 343 a~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~-~~-p~~spdg~~l~~~~~~~g~--~~l~~~~~--~g~----~~~~l~~ 412 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATGQVTALTDTTRD-ES-PSFAPNGRYILYATQQGGR--SVLAAVSS--DGR----IKQRLSV 412 (427)
T ss_pred EEEEccCCcEEEEEEECCCCCeEEccCCCCc-cC-ceECCCCCEEEEEEecCCC--EEEEEEEC--CCC----ceEEeec
Confidence 8888777777999999999988899865332 33 4599999999999887653 67999988 554 4455654
Q ss_pred CCC-eEEEEEcC
Q 004067 464 GKG-KHVAVLDH 474 (776)
Q Consensus 464 ~~~-~~~~~~sp 474 (776)
..+ +..++|||
T Consensus 413 ~~g~~~~p~wsp 424 (427)
T PRK02889 413 QGGDVREPSWGP 424 (427)
T ss_pred CCCCCCCCccCC
Confidence 433 34567776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=206.59 Aligned_cols=244 Identities=13% Similarity=0.151 Sum_probs=179.2
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
..|+++|.+++..+ .++.+.. .+..|+|||||+.|+|++. .+||++++++|+.++++.....
T Consensus 184 ~~l~i~D~~g~~~~-~lt~~~~-~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~------------ 249 (433)
T PRK04922 184 YALQVADSDGYNPQ-TILRSAE-PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI------------ 249 (433)
T ss_pred EEEEEECCCCCCce-EeecCCC-ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC------------
Confidence 35999999988888 7876654 4789999999999999984 3699999999998888753321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.+.++.
T Consensus 250 ------~~~~~~SpDG~~l~~~~s~~g---------------------------------~~~Iy~~d~~~g~~~~lt~- 289 (433)
T PRK04922 250 ------NGAPSFSPDGRRLALTLSRDG---------------------------------NPEIYVMDLGSRQLTRLTN- 289 (433)
T ss_pred ------ccCceECCCCCEEEEEEeCCC---------------------------------CceEEEEECCCCCeEECcc-
Confidence 235789999999998763221 1469999999998877632
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
.......++|||||+.|++.+++. ....||.+|+++++.++++.... +. ....|+ .+++.+
T Consensus 290 --------~~~~~~~~~~spDG~~l~f~sd~~-g~~~iy~~dl~~g~~~~lt~~g~--~~-~~~~~S-------pDG~~I 350 (433)
T PRK04922 290 --------HFGIDTEPTWAPDGKSIYFTSDRG-GRPQIYRVAASGGSAERLTFQGN--YN-ARASVS-------PDGKKI 350 (433)
T ss_pred --------CCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCCeEEeecCCC--Cc-cCEEEC-------CCCCEE
Confidence 333445789999999999988765 34679999999999888874321 11 112233 345567
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
+|.+..++..+|++|++++++.++|+.+.. ...+ .|++||+.|+|.+...+. ..||.+++ +|. ..++|+.
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~-~~~p-~~spdG~~i~~~s~~~g~--~~L~~~~~--~g~----~~~~l~~ 420 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVRTLTPGSL-DESP-SFAPNGSMVLYATREGGR--GVLAAVST--DGR----VRQRLVS 420 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeEECCCCCC-CCCc-eECCCCCEEEEEEecCCc--eEEEEEEC--CCC----ceEEccc
Confidence 787766666799999999999899987643 2333 599999999999886543 68999998 554 5566765
Q ss_pred CCC-eEEEEEcC
Q 004067 464 GKG-KHVAVLDH 474 (776)
Q Consensus 464 ~~~-~~~~~~sp 474 (776)
..+ +..++|||
T Consensus 421 ~~g~~~~p~wsp 432 (433)
T PRK04922 421 ADGEVREPAWSP 432 (433)
T ss_pred CCCCCCCCccCC
Confidence 433 44567776
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=193.89 Aligned_cols=225 Identities=20% Similarity=0.134 Sum_probs=149.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh-hhhhh--c
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE-ASIKH--N 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~-~~~~~--~ 613 (776)
+....+.|... +.++.|+||++||.+++.. .+..+++.|+++||.|+++|+||+|.+..... ..... .
T Consensus 12 ~~~~~~~p~~~--~~~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~ 82 (249)
T PRK10566 12 IEVLHAFPAGQ--RDTPLPTVFFYHGFTSSKL-------VYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQ 82 (249)
T ss_pred cceEEEcCCCC--CCCCCCEEEEeCCCCcccc-------hHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHH
Confidence 45566667542 2246799999999766543 23446888999999999999999986421100 00000 0
Q ss_pred cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc-cccccccCCCCC
Q 004067 614 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-FYTEKYMGLPSE 692 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~ 692 (776)
......+|+.++++++.++..++.++|+++||||||++++.++.++|+.. +.+...+...+..... .+.......+..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (249)
T PRK10566 83 ILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVK-CVASLMGSGYFTSLARTLFPPLIPETAAQ 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCee-EEEEeeCcHHHHHHHHHhccccccccccc
Confidence 00123577888889998887789999999999999999999999888754 4333322211110000 000000000100
Q ss_pred Cc------cchhcCChhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCC--CeEEEEecCCCCCCCCCCcHHH
Q 004067 693 DP------VGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMPRRHRDRIY 763 (776)
Q Consensus 693 ~~------~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~~~~~H~~~~~~~~~~ 763 (776)
.. ..+...++...+.++ ++|+|++||++|.++|+.++.++++++..++. +++++.+++++|.+. ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~-----~~ 236 (249)
T PRK10566 162 QAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT-----PE 236 (249)
T ss_pred HHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC-----HH
Confidence 00 111223344455666 68999999999999999999999999988876 478899999999873 35
Q ss_pred HHHHHHHHHHHhC
Q 004067 764 MEERIWEFIERTL 776 (776)
Q Consensus 764 ~~~~~~~fl~~~l 776 (776)
.+..+.+||+++|
T Consensus 237 ~~~~~~~fl~~~~ 249 (249)
T PRK10566 237 ALDAGVAFFRQHL 249 (249)
T ss_pred HHHHHHHHHHhhC
Confidence 6899999999886
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=203.59 Aligned_cols=249 Identities=20% Similarity=0.178 Sum_probs=179.0
Q ss_pred CCEEEEEeCCCC-cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEE
Q 004067 66 DNLITYLLSPDH-SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMV 144 (776)
Q Consensus 66 G~~ia~~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~ 144 (776)
+++|||++...+ ....+||++|.+|.+.++++.+. ..+..+.||| ||++|+|
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~------------------------~~v~~p~wSP---DG~~la~ 220 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS------------------------QPLMSPAWSP---DGSKLAY 220 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCC------------------------CccccceEcC---CCCEEEE
Confidence 578999986432 22469999999999888887532 2467899999 9999999
Q ss_pred eC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--C--cEEEEecCCCceeEEeeCCCCCceec
Q 004067 145 PL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--C--ELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 145 ~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~--~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
.. +.+||+||+.+++.+ .++..+. ....++|||||++|+|... + +||++++++++.++++.....
T Consensus 221 ~s~~~~~~~i~i~dl~tg~~~-~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~----- 293 (429)
T PRK01742 221 VSFENKKSQLVVHDLRSGARK-VVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGN----- 293 (429)
T ss_pred EEecCCCcEEEEEeCCCCceE-EEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCC-----
Confidence 73 246999999998877 6655443 3567999999999999863 2 599999999999888764321
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 296 (776)
...+.|||||++|+|.+...+. .+||.++..++.
T Consensus 294 -------------~~~~~wSpDG~~i~f~s~~~g~---------------------------------~~I~~~~~~~~~ 327 (429)
T PRK01742 294 -------------NTEPSWSPDGQSILFTSDRSGS---------------------------------PQVYRMSASGGG 327 (429)
T ss_pred -------------cCCEEECCCCCEEEEEECCCCC---------------------------------ceEEEEECCCCC
Confidence 3367899999999998743221 467888888777
Q ss_pred eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCc
Q 004067 297 VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGV 376 (776)
Q Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 376 (776)
...+.. .. ..+.|||||+.|++... ..|+++|+.+|..+.++... ....+.|+|
T Consensus 328 ~~~l~~----------~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~----~~~~~~~sP----- 381 (429)
T PRK01742 328 ASLVGG----------RG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF----LDESPSISP----- 381 (429)
T ss_pred eEEecC----------CC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC----CCCCceECC-----
Confidence 655521 11 34789999998887753 24788999999887775431 111222333
Q ss_pred cccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 377 TKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 377 ~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
++..+++.+.+++...+++++.+|+..++|+.+...+..+ .|||
T Consensus 382 --dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p-~wsp 425 (429)
T PRK01742 382 --NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP-AWSP 425 (429)
T ss_pred --CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc-ccCC
Confidence 3444777776666667888899999889997665444444 4776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=202.98 Aligned_cols=243 Identities=16% Similarity=0.185 Sum_probs=177.2
Q ss_pred cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecCCccccee
Q 004067 149 GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 149 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~ 224 (776)
.|+++|.++++.+ .++.... .+..|.|||||++|+|++.. +||++++++|+.++++.....
T Consensus 180 ~l~~~d~~g~~~~-~l~~~~~-~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~------------- 244 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQSRE-PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL------------- 244 (430)
T ss_pred EEEEECCCCCCce-EEecCCC-ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC-------------
Confidence 4899999998887 7765543 47889999999999999743 699999999999888754321
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEccc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQC 304 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~ 304 (776)
...+.|||||++|+|.....+ ..+||++|+++++.+.++
T Consensus 245 -----~~~~~~SpDG~~la~~~~~~g---------------------------------~~~Iy~~d~~~~~~~~lt--- 283 (430)
T PRK00178 245 -----NGAPAWSPDGSKLAFVLSKDG---------------------------------NPEIYVMDLASRQLSRVT--- 283 (430)
T ss_pred -----cCCeEECCCCCEEEEEEccCC---------------------------------CceEEEEECCCCCeEEcc---
Confidence 235789999999999763221 156899999999888773
Q ss_pred CCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEE
Q 004067 305 GGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI 384 (776)
Q Consensus 305 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (776)
........+.|||||+.|++.+++. ....||++|+++|+.++++...... ..+.| +.+++.++
T Consensus 284 ------~~~~~~~~~~~spDg~~i~f~s~~~-g~~~iy~~d~~~g~~~~lt~~~~~~---~~~~~-------Spdg~~i~ 346 (430)
T PRK00178 284 ------NHPAIDTEPFWGKDGRTLYFTSDRG-GKPQIYKVNVNGGRAERVTFVGNYN---ARPRL-------SADGKTLV 346 (430)
T ss_pred ------cCCCCcCCeEECCCCCEEEEEECCC-CCceEEEEECCCCCEEEeecCCCCc---cceEE-------CCCCCEEE
Confidence 2333455689999999998887665 4568999999999988886432110 11122 33456688
Q ss_pred EEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC
Q 004067 385 WASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 464 (776)
Q Consensus 385 ~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~ 464 (776)
|.+..++..+|+++|+++++.++|+..... ..+ .|||||+.|+|.+...+. ..||.+++ +|. ..++|+..
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~-~~p-~~spdg~~i~~~~~~~g~--~~l~~~~~--~g~----~~~~l~~~ 416 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVRILTDTSLD-ESP-SVAPNGTMLIYATRQQGR--GVLMLVSI--NGR----VRLPLPTA 416 (430)
T ss_pred EEEccCCceEEEEEECCCCCEEEccCCCCC-CCc-eECCCCCEEEEEEecCCc--eEEEEEEC--CCC----ceEECcCC
Confidence 887767777899999999999999875332 233 599999999999876543 67999998 554 34456544
Q ss_pred CC-eEEEEEcC
Q 004067 465 KG-KHVAVLDH 474 (776)
Q Consensus 465 ~~-~~~~~~sp 474 (776)
.+ +..++|||
T Consensus 417 ~g~~~~p~ws~ 427 (430)
T PRK00178 417 QGEVREPSWSP 427 (430)
T ss_pred CCCcCCCccCC
Confidence 33 34567776
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-21 Score=198.02 Aligned_cols=241 Identities=18% Similarity=0.195 Sum_probs=163.9
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
.+.+...+...||.++++..+.|.... .+.++||++||.+.... | .+..++..|+++||.|+++|+||+|.
T Consensus 30 ~~~~~~~~~~~dg~~l~~~~~~~~~~~---~~~~~VvllHG~~~~~~----~--~~~~~~~~L~~~Gy~V~~~D~rGhG~ 100 (330)
T PLN02298 30 IKGSKSFFTSPRGLSLFTRSWLPSSSS---PPRALIFMVHGYGNDIS----W--TFQSTAIFLAQMGFACFALDLEGHGR 100 (330)
T ss_pred CccccceEEcCCCCEEEEEEEecCCCC---CCceEEEEEcCCCCCcc----e--ehhHHHHHHHhCCCEEEEecCCCCCC
Confidence 356677888889999999999886421 35689999999754321 2 23334677889999999999999998
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-c-
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-D- 679 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-~- 679 (776)
|..... .........+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|....... .
T Consensus 101 S~~~~~---~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 177 (330)
T PLN02298 101 SEGLRA---YVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRP 177 (330)
T ss_pred CCCccc---cCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCC
Confidence 853211 00001123678899999887754334558999999999999999999999999999999886432110 0
Q ss_pred c-------cccccccC----CCCC------------------CccchhcC--------------ChhhhhccCCCcEEEE
Q 004067 680 T-------FYTEKYMG----LPSE------------------DPVGYEYS--------------SVMHHVHKMKGKLLLV 716 (776)
Q Consensus 680 ~-------~~~~~~~~----~~~~------------------~~~~~~~~--------------~~~~~~~~i~~P~lii 716 (776)
. .+..++.. .+.. +...+... .....+.++++|+|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii 257 (330)
T PLN02298 178 PWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVL 257 (330)
T ss_pred chHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEE
Confidence 0 00000000 0000 00000000 0122356788999999
Q ss_pred ecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC---CcHHHHHHHHHHHHHHhC
Q 004067 717 HGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH---RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 717 ~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~~fl~~~l 776 (776)
||.+|.++|+..+..+++.+.. .+.+++++++++|.+... ...+.+...+.+||.+++
T Consensus 258 ~G~~D~ivp~~~~~~l~~~i~~--~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 258 HGSADVVTDPDVSRALYEEAKS--EDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred ecCCCCCCCHHHHHHHHHHhcc--CCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999887742 356899999999987432 224668889999998764
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=181.88 Aligned_cols=242 Identities=15% Similarity=0.183 Sum_probs=172.6
Q ss_pred CCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC
Q 004067 520 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 599 (776)
Q Consensus 520 ~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~ 599 (776)
.......-.+++++|..+....|.|.... ++..+|+++||..+... | .+...+..|+..||.|+++|++||
T Consensus 23 ~~~~~~~~~~~n~rG~~lft~~W~p~~~~---~pr~lv~~~HG~g~~~s----~--~~~~~a~~l~~~g~~v~a~D~~Gh 93 (313)
T KOG1455|consen 23 GGVTYSESFFTNPRGAKLFTQSWLPLSGT---EPRGLVFLCHGYGEHSS----W--RYQSTAKRLAKSGFAVYAIDYEGH 93 (313)
T ss_pred CccceeeeeEEcCCCCEeEEEecccCCCC---CCceEEEEEcCCcccch----h--hHHHHHHHHHhCCCeEEEeeccCC
Confidence 34455666778889999999999996632 56789999999765432 1 345568899999999999999999
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-- 677 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-- 677 (776)
|.|..-. .... -...-++|+....+.++.+..-..-..+++||||||.+++.++.++|..+.++|+.+|+.-...
T Consensus 94 G~SdGl~--~yi~-~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~ 170 (313)
T KOG1455|consen 94 GRSDGLH--AYVP-SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDT 170 (313)
T ss_pred CcCCCCc--ccCC-cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCcc
Confidence 9885311 1101 1122377888888887776443456799999999999999999999999999999998743110
Q ss_pred -----------ccccccccccCCCCC------------------Cccch-------------h-cCChhhhhccCCCcEE
Q 004067 678 -----------YDTFYTEKYMGLPSE------------------DPVGY-------------E-YSSVMHHVHKMKGKLL 714 (776)
Q Consensus 678 -----------~~~~~~~~~~~~~~~------------------~~~~~-------------~-~~~~~~~~~~i~~P~l 714 (776)
.-..+...+.-.|.. ++--| + ..+....+.++..|+|
T Consensus 171 kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPfl 250 (313)
T KOG1455|consen 171 KPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFL 250 (313)
T ss_pred CCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEE
Confidence 000001111100000 00000 0 1122334667889999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC---CCCcHHHHHHHHHHHHHHh
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR---RHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~---~~~~~~~~~~~~~~fl~~~ 775 (776)
++||++|.++.+..++.+++...+ .+..+.+|||+-|... .+++.+.++..+.+||+++
T Consensus 251 ilHG~dD~VTDp~~Sk~Lye~A~S--~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 251 ILHGTDDKVTDPKVSKELYEKASS--SDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred EEecCCCcccCcHHHHHHHHhccC--CCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 999999999999999999998754 4558899999999974 5778899999999999875
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=191.60 Aligned_cols=227 Identities=18% Similarity=0.207 Sum_probs=157.9
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+..+||..+.+.+|.|.. .+.|+|+++||.+++.. .|..++..|++.||.|+++|+||+|.|......
T Consensus 5 ~~~~~g~~l~~~~~~~~~-----~~~~~v~llHG~~~~~~-------~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~ 72 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT-----YPKALVFISHGAGEHSG-------RYEELAENISSLGILVFSHDHIGHGRSNGEKMM 72 (276)
T ss_pred eecCCCCEEEEEeccCCC-----CCCEEEEEeCCCccccc-------hHHHHHHHHHhCCCEEEEccCCCCCCCCCccCC
Confidence 344699999999999853 35589999999765543 345568889999999999999999987532110
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc----------
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---------- 678 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---------- 678 (776)
...+ ....+|+...++++.+.. ...+++++||||||.+++.++.++|+.++++|+.+|.......
T Consensus 73 --~~~~-~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~ 147 (276)
T PHA02857 73 --IDDF-GVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKL 147 (276)
T ss_pred --cCCH-HHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHH
Confidence 0111 112567777777776542 3468999999999999999999999999999999986542110
Q ss_pred cc-ccccccc-------------------CCCCCC----ccch-h-----cCChhhhhccCCCcEEEEecCCCCccChHH
Q 004067 679 DT-FYTEKYM-------------------GLPSED----PVGY-E-----YSSVMHHVHKMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 679 ~~-~~~~~~~-------------------~~~~~~----~~~~-~-----~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 728 (776)
.. .+..... ..+... ...+ . .......+.++++|+|+++|++|.++|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~ 227 (276)
T PHA02857 148 MGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSG 227 (276)
T ss_pred HHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHH
Confidence 00 0000000 000000 0000 0 001123456788999999999999999999
Q ss_pred HHHHHHHHHHCCCCeEEEEecCCCCCCCCC--CcHHHHHHHHHHHHHHh
Q 004067 729 TARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERT 775 (776)
Q Consensus 729 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~~~fl~~~ 775 (776)
+.++.+.+. .+.++.++++++|.+..+ +.++++++.+.+||+++
T Consensus 228 ~~~l~~~~~---~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 228 AYYFMQHAN---CNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHHHHHHcc---CCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 999988763 257899999999988654 33788999999999875
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=196.69 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=158.8
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+.|+..+|..++++++.|+.. ++.|+||++||..+... + .+..+++.|+++||+|+++|+||+|.+
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~~----~~~P~Vli~gG~~~~~~--~----~~~~~~~~La~~Gy~vl~~D~pG~G~s 236 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKGD----GPFPTVLVCGGLDSLQT--D----YYRLFRDYLAPRGIAMLTIDMPSVGFS 236 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCCC----CCccEEEEeCCcccchh--h----hHHHHHHHHHhCCCEEEEECCCCCCCC
Confidence 5789999988888899999999742 57788887666433211 1 233457789999999999999999987
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc----
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---- 678 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---- 678 (776)
...... . .......++++++.+.+.+|.++|+++||||||++++.++..+|++++++|+.+|+......
T Consensus 237 ~~~~~~---~----d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~ 309 (414)
T PRK05077 237 SKWKLT---Q----DSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKR 309 (414)
T ss_pred CCCCcc---c----cHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhh
Confidence 532100 0 01122357788998888889999999999999999999999999999999998887541100
Q ss_pred ----cccccc---cccCCCCCCccch----hcCC--hhhh-hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 679 ----DTFYTE---KYMGLPSEDPVGY----EYSS--VMHH-VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 679 ----~~~~~~---~~~~~~~~~~~~~----~~~~--~~~~-~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
...+.. ..++.+......+ ...+ .... ..++++|+|+++|++|.++|++.+..+.+.. .+.+
T Consensus 310 ~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~----~~~~ 385 (414)
T PRK05077 310 QQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSS----ADGK 385 (414)
T ss_pred hhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhC----CCCe
Confidence 000000 0112221111111 1111 0111 2568899999999999999999888766543 5678
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++++|++ |.+ +...++...+.+||.++|
T Consensus 386 l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 386 LLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred EEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 9999986 422 468899999999999876
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=194.98 Aligned_cols=238 Identities=13% Similarity=0.106 Sum_probs=158.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.++..+.+++|.++.+..+.|.+. .+.|+|||+||.++... . .|..++..|++.||.|+++|+||+|.|.
T Consensus 61 ~~~~~~~~~~g~~l~~~~~~p~~~----~~~~~iv~lHG~~~~~~---~---~~~~~~~~l~~~g~~v~~~D~~G~G~S~ 130 (349)
T PLN02385 61 TEESYEVNSRGVEIFSKSWLPENS----RPKAAVCFCHGYGDTCT---F---FFEGIARKIASSGYGVFAMDYPGFGLSE 130 (349)
T ss_pred eeeeeEEcCCCCEEEEEEEecCCC----CCCeEEEEECCCCCccc---h---HHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 344456667999999999998653 35689999999755422 1 1344577888899999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc--c--
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--D-- 679 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~--~-- 679 (776)
..... ...+ ...++|+.+.++.+......+..+++|+||||||++++.++.++|+.++++|+.+|....... .
T Consensus 131 ~~~~~--~~~~-~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~ 207 (349)
T PLN02385 131 GLHGY--IPSF-DDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPP 207 (349)
T ss_pred CCCCC--cCCH-HHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCch
Confidence 32110 0000 112556777777766543334568999999999999999999999999999999886431100 0
Q ss_pred --------------c--cc-----cccccCCCCC------Cccch-------------hc-CChhhhhccCCCcEEEEec
Q 004067 680 --------------T--FY-----TEKYMGLPSE------DPVGY-------------EY-SSVMHHVHKMKGKLLLVHG 718 (776)
Q Consensus 680 --------------~--~~-----~~~~~~~~~~------~~~~~-------------~~-~~~~~~~~~i~~P~lii~G 718 (776)
. .+ ...+...... ....+ .. ......+.++++|+|++||
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G 287 (349)
T PLN02385 208 LVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHG 287 (349)
T ss_pred HHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEe
Confidence 0 00 0000000000 00000 00 0112235678899999999
Q ss_pred CCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCc---HHHHHHHHHHHHHHhC
Q 004067 719 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRD---RIYMEERIWEFIERTL 776 (776)
Q Consensus 719 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~~~l 776 (776)
++|.++++..+..+++.+.. .+.+++++++++|.+...+. .+.++..+.+||++++
T Consensus 288 ~~D~vv~~~~~~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 288 EADKVTDPSVSKFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred CCCCccChHHHHHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 99999999999998887632 35689999999998743222 3458899999999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=194.34 Aligned_cols=238 Identities=14% Similarity=0.151 Sum_probs=168.6
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
..|+++|.++...+ .++.+.. .+..|.|||||++|+|++.. +||++++.+|+.++++.....
T Consensus 184 ~~i~i~d~dg~~~~-~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~------------ 249 (429)
T PRK01742 184 YEVRVADYDGFNQF-IVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH------------ 249 (429)
T ss_pred EEEEEECCCCCCce-EeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc------------
Confidence 57999999998877 7776554 47899999999999999753 599999999988877653321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.++++
T Consensus 250 ------~~~~~wSPDG~~La~~~~~~g---------------------------------~~~Iy~~d~~~~~~~~lt-- 288 (429)
T PRK01742 250 ------NGAPAFSPDGSRLAFASSKDG---------------------------------VLNIYVMGANGGTPSQLT-- 288 (429)
T ss_pred ------cCceeECCCCCEEEEEEecCC---------------------------------cEEEEEEECCCCCeEeec--
Confidence 225789999999999763221 156899999999888773
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
.+...+..+.|||||+.|++.+++. +...||.++..++..+.+. .. .+ ...|+ .+++.+
T Consensus 289 -------~~~~~~~~~~wSpDG~~i~f~s~~~-g~~~I~~~~~~~~~~~~l~-~~--~~---~~~~S-------pDG~~i 347 (429)
T PRK01742 289 -------SGAGNNTEPSWSPDGQSILFTSDRS-GSPQVYRMSASGGGASLVG-GR--GY---SAQIS-------ADGKTL 347 (429)
T ss_pred -------cCCCCcCCEEECCCCCEEEEEECCC-CCceEEEEECCCCCeEEec-CC--CC---CccCC-------CCCCEE
Confidence 3444567799999999998887655 4568999999888776652 11 11 12233 344556
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
++.+. ..++++|+.+++.++++... .... +.|+|||+.|++.+...+. ..++.+++ +|. ..++|+.
T Consensus 348 a~~~~----~~i~~~Dl~~g~~~~lt~~~-~~~~-~~~sPdG~~i~~~s~~g~~--~~l~~~~~--~G~----~~~~l~~ 413 (429)
T PRK01742 348 VMING----DNVVKQDLTSGSTEVLSSTF-LDES-PSISPNGIMIIYSSTQGLG--KVLQLVSA--DGR----FKARLPG 413 (429)
T ss_pred EEEcC----CCEEEEECCCCCeEEecCCC-CCCC-ceECCCCCEEEEEEcCCCc--eEEEEEEC--CCC----ceEEccC
Confidence 66554 36888999988877776542 2233 3599999999999875442 33445565 564 5677765
Q ss_pred CCC-eEEEEEcCC
Q 004067 464 GKG-KHVAVLDHN 475 (776)
Q Consensus 464 ~~~-~~~~~~spd 475 (776)
..+ +..++|||-
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 544 456788874
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=191.78 Aligned_cols=239 Identities=19% Similarity=0.167 Sum_probs=159.8
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+...+...+|..+++..+.|.. +.++||++||..+... .+..++..++++||.|+++|+||+|.
T Consensus 28 ~~~~~~~~~~~~g~~l~~~~~~~~~------~~~~vll~HG~~~~~~-------~y~~~~~~l~~~g~~v~~~D~~G~G~ 94 (330)
T PRK10749 28 RQREEAEFTGVDDIPIRFVRFRAPH------HDRVVVICPGRIESYV-------KYAELAYDLFHLGYDVLIIDHRGQGR 94 (330)
T ss_pred hhccceEEEcCCCCEEEEEEccCCC------CCcEEEEECCccchHH-------HHHHHHHHHHHCCCeEEEEcCCCCCC
Confidence 4566677777899999999998753 2368999999755432 33445777889999999999999998
Q ss_pred CchhhhhhhhhccC--CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc-c
Q 004067 602 RGLKFEASIKHNCG--RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y 678 (776)
Q Consensus 602 ~~~~~~~~~~~~~~--~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-~ 678 (776)
|............. ....+|+.+.++.+.... +..++.++||||||.+++.++.++|+.++++|+.+|...... .
T Consensus 95 S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~ 172 (330)
T PRK10749 95 SGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPG--PYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPL 172 (330)
T ss_pred CCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcC--CCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCC
Confidence 86432110000000 012445555555544332 456899999999999999999999999999999988643110 0
Q ss_pred cc--------cc-------------cccccCCCC------CCc-------cchhcC---------------------Chh
Q 004067 679 DT--------FY-------------TEKYMGLPS------EDP-------VGYEYS---------------------SVM 703 (776)
Q Consensus 679 ~~--------~~-------------~~~~~~~~~------~~~-------~~~~~~---------------------~~~ 703 (776)
.. .. ...+...+. ... ..+... ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
T PRK10749 173 PSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVL 252 (330)
T ss_pred CcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHH
Confidence 00 00 000000000 000 000000 111
Q ss_pred hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC---CCeEEEEecCCCCCCCCCCc--HHHHHHHHHHHHHHh
Q 004067 704 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR---KPYEILIFPDERHMPRRHRD--RIYMEERIWEFIERT 775 (776)
Q Consensus 704 ~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~---~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~fl~~~ 775 (776)
..+.+++.|+|+++|++|.++++..+..+++.+.+++ .+.+++++|+++|.+..+.. ++.+++.+.+||+++
T Consensus 253 ~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 253 AGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred hhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 3356788999999999999999999999999887655 35689999999999855444 788999999999875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-19 Score=192.10 Aligned_cols=249 Identities=21% Similarity=0.259 Sum_probs=184.6
Q ss_pred cCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEE
Q 004067 63 SPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKII 142 (776)
Q Consensus 63 SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l 142 (776)
.+.+.+|+|++........+||++|.++++.++++... ..+..+.||| ||++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~------------------------~~~~~p~~Sp---dg~~l 204 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSR------------------------EPILSPAWSP---DGQKL 204 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCC------------------------CceecccCCC---CCCEE
Confidence 34578899998754334568999999999899888632 2366788999 99999
Q ss_pred EEeCC----CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCce
Q 004067 143 MVPLP----DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 143 ~~~~~----~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
+|... .+||++|+.+++.+ .++.... ....+.|||||+.|+|... .+||++++.++..++++.....
T Consensus 205 a~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--- 279 (417)
T TIGR02800 205 AYVSFESGKPEIYVQDLATGQRE-KVASFPG-MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGI--- 279 (417)
T ss_pred EEEEcCCCCcEEEEEECCCCCEE-EeecCCC-CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCC---
Confidence 99832 47999999998777 5554443 3567999999999999864 3699999999988888654321
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
...+.|+|||++|+|.+...+ ..+||++|+++
T Consensus 280 ---------------~~~~~~s~dg~~l~~~s~~~g---------------------------------~~~iy~~d~~~ 311 (417)
T TIGR02800 280 ---------------DTEPSWSPDGKSIAFTSDRGG---------------------------------SPQIYMMDADG 311 (417)
T ss_pred ---------------CCCEEECCCCCEEEEEECCCC---------------------------------CceEEEEECCC
Confidence 225679999999999874321 14689999999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
++...+.. .......+.|||||+.|++..... ....|+++|++++..+.+++... ...+.|
T Consensus 312 ~~~~~l~~---------~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~----~~~p~~----- 372 (417)
T TIGR02800 312 GEVRRLTF---------RGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGGGERVLTDTGL----DESPSF----- 372 (417)
T ss_pred CCEEEeec---------CCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCCCeEEccCCCC----CCCceE-----
Confidence 88877743 234556789999999888876544 45689999999988777764321 112223
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
+.+++.++|.+.+++...|++++.+|+..+.++...
T Consensus 373 --spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 408 (417)
T TIGR02800 373 --APNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGN 408 (417)
T ss_pred --CCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCC
Confidence 334556888888888889999999988888787653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=166.03 Aligned_cols=202 Identities=19% Similarity=0.226 Sum_probs=154.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
-+||++||..|+.. ..+.++++|.++||.|.+|.+||||-....+.......| .+|+.++.++|.+..+
T Consensus 16 ~AVLllHGFTGt~~-------Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy 84 (243)
T COG1647 16 RAVLLLHGFTGTPR-------DVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY 84 (243)
T ss_pred EEEEEEeccCCCcH-------HHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC
Confidence 68999999877654 566789999999999999999999999989988888888 8899999999998764
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc------ccccc---cCCCCC-CccchhcC----
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF------YTEKY---MGLPSE-DPVGYEYS---- 700 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~---~~~~~~-~~~~~~~~---- 700 (776)
+.|+++|.||||.+|+.+|.++| .+++|..++.......... |.+.+ -+...+ ....+...
T Consensus 85 ---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~ 159 (243)
T COG1647 85 ---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTP 159 (243)
T ss_pred ---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcch
Confidence 58999999999999999999988 5666665554332111100 00111 010000 00111111
Q ss_pred ------------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHH
Q 004067 701 ------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 768 (776)
Q Consensus 701 ------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 768 (776)
.....+..|..|+|+++|.+|+.+|.+.+.-+++.... .+.++.+|++.||.++....++.+.+.+
T Consensus 160 ~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~e~V 237 (243)
T COG1647 160 MTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVEEDV 237 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHHHHH
Confidence 22345677889999999999999999999999998853 4679999999999999999999999999
Q ss_pred HHHHHH
Q 004067 769 WEFIER 774 (776)
Q Consensus 769 ~~fl~~ 774 (776)
++||+.
T Consensus 238 ~~FL~~ 243 (243)
T COG1647 238 ITFLEK 243 (243)
T ss_pred HHHhhC
Confidence 999973
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=179.98 Aligned_cols=242 Identities=13% Similarity=0.119 Sum_probs=156.2
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
..+.+++.++ -|..+.+.+|.|+.. ..+++|+|+++||.+++.. .|.. .......++..||+|++||..++|.
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~--~~~~~Pvv~~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~Vv~pd~~~~g~ 90 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS--DSGKVPVLYWLSGLTCTDE---NFIQ-KSGAQRAAAARGIALVAPDTSPRGL 90 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc--cCCCCCEEEEecCCCcChH---HHHH-hhhHHHHHhhcCeEEEecCCCCCCC
Confidence 4566677664 467899999999842 2368999999999776543 2321 1123456778899999999865541
Q ss_pred C------------chh-hhhhhhhccC-----CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCce
Q 004067 602 R------------GLK-FEASIKHNCG-----RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVF 663 (776)
Q Consensus 602 ~------------~~~-~~~~~~~~~~-----~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~ 663 (776)
. +.. +.......+. .+..+++...++... ..++.++++|+||||||++|+.++.++|++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~ 168 (283)
T PLN02442 91 NVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALTIYLKNPDKY 168 (283)
T ss_pred CCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHHHHHhCchhE
Confidence 0 000 0001101110 111233333333322 2357889999999999999999999999999
Q ss_pred EEEEEcCCCCCccccc--ccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChH-HHHHHHHHHHHCC
Q 004067 664 QCAVSGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAAR 740 (776)
Q Consensus 664 ~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~ 740 (776)
+++++.+|+.++.... ......+++.+......+...+++..+...+.|++++||++|..++.. ++..+++.+++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g 248 (283)
T PLN02442 169 KSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAG 248 (283)
T ss_pred EEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcC
Confidence 9999999987643211 111122334333222333344444555566789999999999999874 5789999999999
Q ss_pred CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 741 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.+++++++|+++|.+. ....+......|..++
T Consensus 249 ~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~ 280 (283)
T PLN02442 249 APVTLRLQPGYDHSYF---FIATFIDDHINHHAQA 280 (283)
T ss_pred CCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHH
Confidence 9999999999999763 2333344444555443
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=175.42 Aligned_cols=204 Identities=20% Similarity=0.191 Sum_probs=143.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC-Cchhh--hhhhhhc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR-RGLKF--EASIKHN 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~-~~~~~--~~~~~~~ 613 (776)
+.+++..|++. ++.|+||++|+..|.. .....+++.|+++||.|++||+.+... ..... .......
T Consensus 1 ~~ay~~~P~~~----~~~~~Vvv~~d~~G~~-------~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~ 69 (218)
T PF01738_consen 1 IDAYVARPEGG----GPRPAVVVIHDIFGLN-------PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRE 69 (218)
T ss_dssp EEEEEEEETTS----SSEEEEEEE-BTTBS--------HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHH
T ss_pred CeEEEEeCCCC----CCCCEEEEEcCCCCCc-------hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHH
Confidence 46889999874 4789999999965432 223446889999999999999764433 11111 1111111
Q ss_pred ----cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCC
Q 004067 614 ----CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 689 (776)
Q Consensus 614 ----~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (776)
.......|+.+++++|.++..++.+||+++|+|+||.+++.++.+. ..+++++...|...
T Consensus 70 ~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------- 133 (218)
T PF01738_consen 70 LFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------- 133 (218)
T ss_dssp CHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------
T ss_pred HHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------
Confidence 1112357888999999998878899999999999999999999876 67899998776100
Q ss_pred CCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC-------CcHH
Q 004067 690 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH-------RDRI 762 (776)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~-------~~~~ 762 (776)
...+.....++++|+|+++|++|+.++.+....+.+.+++.+.++++++||+++|.|... ...+
T Consensus 134 ---------~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~ 204 (218)
T PF01738_consen 134 ---------PPPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAE 204 (218)
T ss_dssp ---------GGGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHH
T ss_pred ---------CCcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHH
Confidence 012234567888999999999999999999999999999999999999999999998533 3457
Q ss_pred HHHHHHHHHHHHhC
Q 004067 763 YMEERIWEFIERTL 776 (776)
Q Consensus 763 ~~~~~~~~fl~~~l 776 (776)
+.++++.+||+++|
T Consensus 205 ~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 205 DAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999987
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-19 Score=184.33 Aligned_cols=234 Identities=17% Similarity=0.153 Sum_probs=160.2
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.....+..+++..+.+..|.|... .+.|+||++||.++... .|..++..|+++||.|+++|+||+|.+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~----~~~~~Vl~lHG~~~~~~-------~~~~~a~~L~~~Gy~V~~~D~rGhG~S~ 178 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAG----EMRGILIIIHGLNEHSG-------RYLHFAKQLTSCGFGVYAMDWIGHGGSD 178 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCC----CCceEEEEECCchHHHH-------HHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 455667778888999999999643 35689999999765533 2445688899999999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC---ceEEEEEcCCCCCcccccc
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSGAPVTSWDGYDT 680 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~---~~~~~v~~~~~~~~~~~~~ 680 (776)
.... +........+|+..+++++.... +..+++++||||||.+++.++. +|+ .++++|+.+|.........
T Consensus 179 ~~~~---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~ 252 (395)
T PLN02652 179 GLHG---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHP 252 (395)
T ss_pred CCCC---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchH
Confidence 4311 00000112567888888887543 2347999999999999987764 554 7899999988754321000
Q ss_pred ----------ccccccc--C-----CCC-CCc----cchh------------------cC--ChhhhhccCCCcEEEEec
Q 004067 681 ----------FYTEKYM--G-----LPS-EDP----VGYE------------------YS--SVMHHVHKMKGKLLLVHG 718 (776)
Q Consensus 681 ----------~~~~~~~--~-----~~~-~~~----~~~~------------------~~--~~~~~~~~i~~P~lii~G 718 (776)
.....+. . .+. .+. ..+. .. .....+.++++|+|++||
T Consensus 253 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G 332 (395)
T PLN02652 253 IVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHG 332 (395)
T ss_pred HHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 0000000 0 000 000 0000 00 012335678899999999
Q ss_pred CCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 719 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 719 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++|.++|+..+..+++++.. ...+++++++++|.......++++++.+.+||+.++
T Consensus 333 ~~D~vvp~~~a~~l~~~~~~--~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 333 TADRVTDPLASQDLYNEAAS--RHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred CCCCCCCHHHHHHHHHhcCC--CCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999988632 346788999999998666678999999999998764
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=175.61 Aligned_cols=241 Identities=15% Similarity=0.137 Sum_probs=159.0
Q ss_pred ceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECC--CCCC
Q 004067 524 PDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--RGTA 600 (776)
Q Consensus 524 ~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--rg~g 600 (776)
.+..++.+. -+.++.+.+|.|+... .++.|+|+++||.+++.. .|... ......+++.||.|++||. ||++
T Consensus 13 ~~~~~~~s~~~~~~~~~~v~~P~~~~--~~~~P~vvllHG~~~~~~---~~~~~-~~~~~la~~~g~~Vv~Pd~~~~g~~ 86 (275)
T TIGR02821 13 QGFYRHKSETCGVPMTFGVFLPPQAA--AGPVPVLWYLSGLTCTHE---NFMIK-AGAQRFAAEHGLALVAPDTSPRGTG 86 (275)
T ss_pred EEEEEEeccccCCceEEEEEcCCCcc--CCCCCEEEEccCCCCCcc---HHHhh-hHHHHHHhhcCcEEEEeCCCCCcCC
Confidence 444555554 5678999999998631 246899999999776543 23111 1123444567999999997 6655
Q ss_pred CCchh--h---------hhhhhhccC-Ccc-HHHHHHHHHHHHH-cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 601 RRGLK--F---------EASIKHNCG-RID-AEDQLTGAEWLIK-QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 601 ~~~~~--~---------~~~~~~~~~-~~~-~~D~~~~i~~l~~-~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
.++.. | .......+. ... ...+...+..+++ +..++.++++|+||||||++++.++.++|+.|+++
T Consensus 87 ~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~ 166 (275)
T TIGR02821 87 IAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSV 166 (275)
T ss_pred CCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEE
Confidence 33311 1 000000000 011 2223334444443 34578889999999999999999999999999999
Q ss_pred EEcCCCCCccccc--ccccccccCCCCCCccchhcCChhhhhcc--CCCcEEEEecCCCCccCh-HHHHHHHHHHHHCCC
Q 004067 667 VSGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHK--MKGKLLLVHGMIDENVHF-RHTARLINALVAARK 741 (776)
Q Consensus 667 v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~-~~~~~~~~~l~~~~~ 741 (776)
++.+|+.+..... ......+++.+. +.+...++...+.+ ...|+++.||+.|..++. .++..+.+++++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~ 243 (275)
T TIGR02821 167 SAFAPIVAPSRCPWGQKAFSAYLGADE---AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQ 243 (275)
T ss_pred EEECCccCcccCcchHHHHHHHhcccc---cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcCC
Confidence 9999987653211 011122333222 22333444444333 457999999999999998 678899999999999
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++++.++|+++|.+.. ........++|+.+++
T Consensus 244 ~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 244 ALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred CeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 9999999999998843 5566788888888765
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=174.93 Aligned_cols=283 Identities=16% Similarity=0.180 Sum_probs=190.6
Q ss_pred cCCCCEEEEEeCCCC----cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 63 SPDDNLITYLLSPDH----SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 63 SpDG~~ia~~~~~~~----~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
||||+++.+..+... .....+|++|+++++.++++.. ......+.||| |
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~------------------------~~~~~~~~~sP---~ 53 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP------------------------PPKLQDAKWSP---D 53 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E------------------------ETTBSEEEE-S---S
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC------------------------ccccccceeec---C
Confidence 899999999765322 2235899999999999888852 12467889999 9
Q ss_pred ceEEEEeCCCcEEEEeCCCCccceecCCCCC-----------------CCccCceeCCCCCEEEEEECC-----------
Q 004067 139 KKIIMVPLPDGIYFQDLSCSKPELKLSSSSC-----------------SPVIDPHLSSDGTMIAFVRDC----------- 190 (776)
Q Consensus 139 g~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~-----------------~~~~~~~~SpDg~~la~~~~~----------- 190 (776)
|+.|+|..+++||+.++.+++.+ +||.... ..-..+.|||||++|||.+-+
T Consensus 54 g~~~~~v~~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~ 132 (353)
T PF00930_consen 54 GKYIAFVRDNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD 132 (353)
T ss_dssp STEEEEEETTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE
T ss_pred CCeeEEEecCceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec
Confidence 99999999999999999999888 7776431 123457899999999999721
Q ss_pred --------------------------cEEEEecCCCceeEEeeC---CCCCceecCCcccceecccCCcceEEECCCCCe
Q 004067 191 --------------------------ELHVLNLLINEQRQLTHG---ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKF 241 (776)
Q Consensus 191 --------------------------~l~~~~l~~g~~~~lt~~---~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~ 241 (776)
.|+++++++++...+... .....+ +..+.|++|++.
T Consensus 133 ~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~y---------------l~~v~W~~d~~~ 197 (353)
T PF00930_consen 133 YSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYY---------------LTRVGWSPDGKR 197 (353)
T ss_dssp ESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEE---------------EEEEEEEETTEE
T ss_pred cCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccC---------------cccceecCCCcE
Confidence 277777777766544322 011111 336789999998
Q ss_pred EEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEe
Q 004067 242 IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW 321 (776)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (776)
|++...++.+. ...+.++|..+++.+.+..... ...-.....+.|
T Consensus 198 l~~~~~nR~q~-------------------------------~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 198 LWVQWLNRDQN-------------------------------RLDLVLCDASTGETRVVLEETS----DGWVDVYDPPHF 242 (353)
T ss_dssp EEEEEEETTST-------------------------------EEEEEEEEECTTTCEEEEEEES----SSSSSSSSEEEE
T ss_pred EEEEEcccCCC-------------------------------EEEEEEEECCCCceeEEEEecC----Ccceeeeccccc
Confidence 88877665542 2668888998887766543211 112222234566
Q ss_pred c-cCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc--CCceEEEEE
Q 004067 322 M-HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK--TGFRHLYLH 398 (776)
Q Consensus 322 S-pDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~g~~~l~~~ 398 (776)
. +|+..+++.+.+. +..+||+++.+++..+.||... |.... .... ..+.+.+||++.. .+..+||++
T Consensus 243 ~~~~~~~~l~~s~~~-G~~hly~~~~~~~~~~~lT~G~---~~V~~-i~~~-----d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 243 LGPDGNEFLWISERD-GYRHLYLYDLDGGKPRQLTSGD---WEVTS-ILGW-----DEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp -TTTSSEEEEEEETT-SSEEEEEEETTSSEEEESS-SS---S-EEE-EEEE-----ECTSSEEEEEESSGGTTSBEEEEE
T ss_pred ccCCCCEEEEEEEcC-CCcEEEEEcccccceeccccCc---eeecc-cceE-----cCCCCEEEEEecCCCCCceEEEEE
Confidence 5 8888777776644 6889999999999988888654 32211 1111 2234568998876 467899999
Q ss_pred eCC-CceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 399 DIN-GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 399 ~~~-g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
+++ +++.+.||........ ..+||||++++.+-..
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~-~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYS-ASFSPDGKYYVDTYSG 348 (353)
T ss_dssp ETTETTEEEESSTTSSTTEE-EEE-TTSSEEEEEEES
T ss_pred EeCCCCCeEeccCCCCCceE-EEECCCCCEEEEEEcC
Confidence 999 9999999987543323 3499999987777544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=173.20 Aligned_cols=235 Identities=21% Similarity=0.211 Sum_probs=160.0
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
..+..+...||..+.+..+.+.+. +..+||++||..+... .+..++..|..+||.|+++|.||+|.|.
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~-----~~g~Vvl~HG~~Eh~~-------ry~~la~~l~~~G~~V~~~D~RGhG~S~ 76 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEP-----PKGVVVLVHGLGEHSG-------RYEELADDLAARGFDVYALDLRGHGRSP 76 (298)
T ss_pred cccceeecCCCceEEEEeecCCCC-----CCcEEEEecCchHHHH-------HHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 445567777999999999998763 3379999999766543 4556789999999999999999999996
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--cc--
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YD-- 679 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~--~~-- 679 (776)
+ ....+-........|+...++.+... ....+++++||||||.+++.++.+++..++++|+.+|...... ..
T Consensus 77 r--~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~ 152 (298)
T COG2267 77 R--GQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLI 152 (298)
T ss_pred C--CCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHH
Confidence 3 00000000011133444444444432 1346899999999999999999999999999999999876441 00
Q ss_pred ---------ccccccc-cCC----C----C--CCc---cchh--------------------cC--ChhhhhccCCCcEE
Q 004067 680 ---------TFYTEKY-MGL----P----S--EDP---VGYE--------------------YS--SVMHHVHKMKGKLL 714 (776)
Q Consensus 680 ---------~~~~~~~-~~~----~----~--~~~---~~~~--------------------~~--~~~~~~~~i~~P~l 714 (776)
..+...+ ... . + .+. ..|. .. .......+++.|+|
T Consensus 153 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvL 232 (298)
T COG2267 153 LARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVL 232 (298)
T ss_pred HHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEE
Confidence 0000000 000 0 0 000 0000 00 11222456678999
Q ss_pred EEecCCCCccC-hHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH--HHHHHHHHHHHHHhC
Q 004067 715 LVHGMIDENVH-FRHTARLINALVAARKPYEILIFPDERHMPRRHRDR--IYMEERIWEFIERTL 776 (776)
Q Consensus 715 ii~G~~D~~v~-~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~fl~~~l 776 (776)
+++|++|.+++ .....++++++.. .+.++.+++++.|....+... +++++.+.+||.+++
T Consensus 233 ll~g~~D~vv~~~~~~~~~~~~~~~--~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 233 LLQGGDDRVVDNVEGLARFFERAGS--PDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred EEecCCCccccCcHHHHHHHHhcCC--CCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 99999999999 6777777777632 346999999999998777777 999999999998763
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-18 Score=162.84 Aligned_cols=215 Identities=21% Similarity=0.165 Sum_probs=164.6
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+.+.+++++ .++.+++..|... .+.|+||++|+-.+... .....++.|+..||.|++||+-+..+..
T Consensus 2 ~~~v~~~~~~-~~~~~~~a~P~~~----~~~P~VIv~hei~Gl~~-------~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~ 69 (236)
T COG0412 2 GTDVTIPAPD-GELPAYLARPAGA----GGFPGVIVLHEIFGLNP-------HIRDVARRLAKAGYVVLAPDLYGRQGDP 69 (236)
T ss_pred CcceEeeCCC-ceEeEEEecCCcC----CCCCEEEEEecccCCch-------HHHHHHHHHHhCCcEEEechhhccCCCC
Confidence 3567788766 7899999999885 34499999999544322 3455688999999999999976532211
Q ss_pred hhhh--h-hhhh-----ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 604 LKFE--A-SIKH-----NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 604 ~~~~--~-~~~~-----~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
.... . .... ........|+.+++++|.+++.++..+|+++|+||||.+++.++.+.| .++++++..|..-.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~ 148 (236)
T COG0412 70 TDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIA 148 (236)
T ss_pred CcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCC
Confidence 1111 0 1111 111345789999999999998789999999999999999999999877 68999997764210
Q ss_pred ccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 676 DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
.......++++|+|+.+|..|..+|......+.+++...+..+++.+|+++.|.|
T Consensus 149 -------------------------~~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 149 -------------------------DDTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred -------------------------CcccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 0011256788999999999999999999999999999988899999999999998
Q ss_pred CCCC----------cHHHHHHHHHHHHHHhC
Q 004067 756 RRHR----------DRIYMEERIWEFIERTL 776 (776)
Q Consensus 756 ~~~~----------~~~~~~~~~~~fl~~~l 776 (776)
.... ..+..++++.+||.++|
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~ 234 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLL 234 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 6432 25788999999999875
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=154.60 Aligned_cols=231 Identities=15% Similarity=0.147 Sum_probs=166.8
Q ss_pred hccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECC
Q 004067 517 KRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN 596 (776)
Q Consensus 517 ~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 596 (776)
.+..+ +.|.+++.++|.+++++|....++ ..|.++++|+..|+.. .......-.+...+..|+.++|
T Consensus 48 ~~~n~-pye~i~l~T~D~vtL~a~~~~~E~------S~pTlLyfh~NAGNmG------hr~~i~~~fy~~l~mnv~ivsY 114 (300)
T KOG4391|consen 48 KEFNM-PYERIELRTRDKVTLDAYLMLSES------SRPTLLYFHANAGNMG------HRLPIARVFYVNLKMNVLIVSY 114 (300)
T ss_pred cccCC-CceEEEEEcCcceeEeeeeecccC------CCceEEEEccCCCccc------chhhHHHHHHHHcCceEEEEEe
Confidence 33444 788999999999999999998332 4599999999766543 1222222345678999999999
Q ss_pred CCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 597 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 597 rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
||.|.|.....+.. -..|..++++|+.+++..|..+++++|.|.||.+|+.+|++..+++.|+++...+....
T Consensus 115 RGYG~S~GspsE~G-------L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp 187 (300)
T KOG4391|consen 115 RGYGKSEGSPSEEG-------LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIP 187 (300)
T ss_pred eccccCCCCccccc-------eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccch
Confidence 99998864433221 15689999999999999999999999999999999999999999999999987766542
Q ss_pred ccc-cc---ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCC
Q 004067 677 GYD-TF---YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 752 (776)
Q Consensus 677 ~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 752 (776)
.+. .. +..+++.. +-....| .....+..-+.|.|++.|.+|++|||-....+++.+.++. .++..||++.
T Consensus 188 ~~~i~~v~p~~~k~i~~-lc~kn~~---~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~--Krl~eFP~gt 261 (300)
T KOG4391|consen 188 HMAIPLVFPFPMKYIPL-LCYKNKW---LSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRT--KRLAEFPDGT 261 (300)
T ss_pred hhhhheeccchhhHHHH-HHHHhhh---cchhhhccccCceEEeecCccccCCcHHHHHHHHhCchhh--hhheeCCCCc
Confidence 211 11 11111100 0000111 1222344556799999999999999999999999886544 4789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHh
Q 004067 753 HMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 753 H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
|+-... -+-+++.+.+||.+.
T Consensus 262 HNDT~i--~dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 262 HNDTWI--CDGYFQAIEDFLAEV 282 (300)
T ss_pred cCceEE--eccHHHHHHHHHHHh
Confidence 975443 235788899998763
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=157.65 Aligned_cols=218 Identities=20% Similarity=0.199 Sum_probs=159.8
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+..++..|..+-+..+.|... ..++||+.||...... .....+...-...++.++++||+|.|.|
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~-----~~~~lly~hGNa~Dlg------q~~~~~~~l~~~ln~nv~~~DYSGyG~S 102 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA-----AHPTLLYSHGNAADLG------QMVELFKELSIFLNCNVVSYDYSGYGRS 102 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc-----cceEEEEcCCcccchH------HHHHHHHHHhhcccceEEEEeccccccc
Confidence 5667777888888888888888773 5689999999532211 1111112222235899999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (776)
+....+. ...+|+.++.++|++... ..++|+|+|+|+|...++.+|++.| ..++|+.+|+.+..... +
T Consensus 103 ~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~--~ 170 (258)
T KOG1552|consen 103 SGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVA--F 170 (258)
T ss_pred CCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhh--c
Confidence 6543321 348999999999999876 7789999999999999999999988 89999999998743221 0
Q ss_pred cccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHH
Q 004067 683 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 762 (776)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~ 762 (776)
... ...-.+.....++.+..+++|+|++||++|++++..+..+++++++ .+++..+..|+||.- .+...
T Consensus 171 ~~~------~~~~~~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k---~~~epl~v~g~gH~~--~~~~~ 239 (258)
T KOG1552|consen 171 PDT------KTTYCFDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCK---EKVEPLWVKGAGHND--IELYP 239 (258)
T ss_pred cCc------ceEEeeccccccCcceeccCCEEEEecccCceecccccHHHHHhcc---ccCCCcEEecCCCcc--cccCH
Confidence 000 0001111222356678888999999999999999999999999884 346888889999974 34556
Q ss_pred HHHHHHHHHHHH
Q 004067 763 YMEERIWEFIER 774 (776)
Q Consensus 763 ~~~~~~~~fl~~ 774 (776)
++...+..|+..
T Consensus 240 ~yi~~l~~f~~~ 251 (258)
T KOG1552|consen 240 EYIEHLRRFISS 251 (258)
T ss_pred HHHHHHHHHHHH
Confidence 777888887753
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=171.96 Aligned_cols=240 Identities=18% Similarity=0.214 Sum_probs=172.4
Q ss_pred EEEEeCC-CCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--
Q 004067 69 ITYLLSP-DHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-- 145 (776)
Q Consensus 69 ia~~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-- 145 (776)
|+|+... .+....++++.|-++-..+.++... ..+..+.|+| |++.++|.
T Consensus 160 i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~------------------------~~~~~p~ws~---~~~~~~y~~f 212 (425)
T COG0823 160 IAYVAESDGGPLPYELALGDYDGYNQQKLTDSG------------------------SLILTPAWSP---DGKKLAYVSF 212 (425)
T ss_pred EEEEeecccCCCCceEEEEccCCcceeEecccC------------------------cceeccccCc---CCCceEEEEE
Confidence 4444332 2334568999999976767676421 2456789999 99999887
Q ss_pred --CC-CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecCC
Q 004067 146 --LP-DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHGL 218 (776)
Q Consensus 146 --~~-~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~ 218 (776)
.. ..+|++|+++++.. .+..... ....|+|||||++|+|+..+ +||++|+.+++.++|+.....
T Consensus 213 ~~~~~~~i~~~~l~~g~~~-~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi------- 283 (425)
T COG0823 213 ELGGCPRIYYLDLNTGKRP-VILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGI------- 283 (425)
T ss_pred ecCCCceEEEEeccCCccc-eeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCcc-------
Confidence 22 46999999999888 5544443 37889999999999999864 699999999998888875432
Q ss_pred cccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE
Q 004067 219 AEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS 298 (776)
Q Consensus 219 ~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 298 (776)
...+.|||||++|+|.+...+. .+||+++++++...
T Consensus 284 -----------~~~Ps~spdG~~ivf~Sdr~G~---------------------------------p~I~~~~~~g~~~~ 319 (425)
T COG0823 284 -----------NTSPSWSPDGSKIVFTSDRGGR---------------------------------PQIYLYDLEGSQVT 319 (425)
T ss_pred -----------ccCccCCCCCCEEEEEeCCCCC---------------------------------cceEEECCCCCcee
Confidence 2256799999999999854332 57899999999998
Q ss_pred EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc-eEEEEEeccCceeecccccccCCCCcc
Q 004067 299 WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-RKVILVEELDSWVNLHDCFTPLDKGVT 377 (776)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (776)
+++.. ......+.|||||++|++.... .+...|...|+.++. .+.++.... ...+.+.+
T Consensus 320 riT~~---------~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt~~~~----~e~ps~~~------ 379 (425)
T COG0823 320 RLTFS---------GGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILTSTYL----NESPSWAP------ 379 (425)
T ss_pred Eeecc---------CCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEcccccc----CCCCCcCC------
Confidence 88653 2222379999999999988743 334779999998777 555544321 12222222
Q ss_pred ccCCeEEEEeccCCceEEEEEeCCCceeeccc
Q 004067 378 KYSGGFIWASEKTGFRHLYLHDINGTCLGPIT 409 (776)
Q Consensus 378 ~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt 409 (776)
++..++|.+...+...|+....++...+.+-
T Consensus 380 -ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 380 -NGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred -CCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 3445788887777888988888877655443
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=174.78 Aligned_cols=234 Identities=21% Similarity=0.281 Sum_probs=152.6
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+...++|.+.+|..++++++.|++.. ++.|+||.+||.++... .| . ....++.+||+|+.+|.||.|+.
T Consensus 55 ~vy~v~f~s~~g~~V~g~l~~P~~~~---~~~Pavv~~hGyg~~~~---~~----~-~~~~~a~~G~~vl~~d~rGqg~~ 123 (320)
T PF05448_consen 55 EVYDVSFESFDGSRVYGWLYRPKNAK---GKLPAVVQFHGYGGRSG---DP----F-DLLPWAAAGYAVLAMDVRGQGGR 123 (320)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEES-SS---SSEEEEEEE--TT--GG---GH----H-HHHHHHHTT-EEEEE--TTTSSS
T ss_pred EEEEEEEEccCCCEEEEEEEecCCCC---CCcCEEEEecCCCCCCC---Cc----c-cccccccCCeEEEEecCCCCCCC
Confidence 46678999889999999999998532 68999999999765422 11 1 12357899999999999999843
Q ss_pred chhhhhh------hhhccC----------CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 603 GLKFEAS------IKHNCG----------RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 603 ~~~~~~~------~~~~~~----------~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
..+.... .+...+ ...+.|+.++++++.+++.+|.++|+++|.|+||.+++.+|+..++ ++++
T Consensus 124 ~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~r-v~~~ 202 (320)
T PF05448_consen 124 SPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPR-VKAA 202 (320)
T ss_dssp S-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST--SEE
T ss_pred CCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCcc-ccEE
Confidence 3221110 000001 1236899999999999999999999999999999999999998765 7888
Q ss_pred EEcCCCC-Ccccc------cccccc--cccC----CCCCCc---cchhcCChhhhhccCCCcEEEEecCCCCccChHHHH
Q 004067 667 VSGAPVT-SWDGY------DTFYTE--KYMG----LPSEDP---VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 730 (776)
Q Consensus 667 v~~~~~~-~~~~~------~~~~~~--~~~~----~~~~~~---~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 730 (776)
++..|.. ++... ...|.+ .|+. .+.... +.+.-.+....+.+|++|+++..|..|.+|||....
T Consensus 203 ~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~f 282 (320)
T PF05448_consen 203 AADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQF 282 (320)
T ss_dssp EEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHH
T ss_pred EecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHH
Confidence 8877754 32211 011111 1111 111111 223455777889999999999999999999999999
Q ss_pred HHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 731 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 731 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..++++. .+.++++||..+|... .........+||.+|
T Consensus 283 A~yN~i~---~~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 283 AAYNAIP---GPKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp HHHCC-----SSEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred HHHhccC---CCeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 9999883 4689999999999652 233368899999876
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-17 Score=175.34 Aligned_cols=247 Identities=16% Similarity=0.104 Sum_probs=174.7
Q ss_pred CCCCEEEEEECC------cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCC
Q 004067 179 SDGTMIAFVRDC------ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEI 252 (776)
Q Consensus 179 pDg~~la~~~~~------~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 252 (776)
..+.+++|++.. +||+++.+++..++++..... ...+.|||||++|+|.....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~------------------~~~p~~Spdg~~la~~~~~~~-- 212 (417)
T TIGR02800 153 AFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREP------------------ILSPAWSPDGQKLAYVSFESG-- 212 (417)
T ss_pred CcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCc------------------eecccCCCCCCEEEEEEcCCC--
Confidence 457788998754 599999988888888764421 335679999999999874321
Q ss_pred CeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 253 PRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
...|++||+++++...+.. .......++|||||+.|++..
T Consensus 213 -------------------------------~~~i~v~d~~~g~~~~~~~---------~~~~~~~~~~spDg~~l~~~~ 252 (417)
T TIGR02800 213 -------------------------------KPEIYVQDLATGQREKVAS---------FPGMNGAPAFSPDGSKLAVSL 252 (417)
T ss_pred -------------------------------CcEEEEEECCCCCEEEeec---------CCCCccceEECCCCCEEEEEE
Confidence 1468999999998776632 223345689999999888775
Q ss_pred eecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC
Q 004067 333 NRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 333 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
... +...||++|++++..+.++..... ...+.|+ .++..++|.+++.|..+||++++++++.++++...
T Consensus 253 ~~~-~~~~i~~~d~~~~~~~~l~~~~~~---~~~~~~s-------~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~ 321 (417)
T TIGR02800 253 SKD-GNPDIYVMDLDGKQLTRLTNGPGI---DTEPSWS-------PDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG 321 (417)
T ss_pred CCC-CCccEEEEECCCCCEEECCCCCCC---CCCEEEC-------CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC
Confidence 443 456799999999988887654321 1112232 24556888888888889999999998888888654
Q ss_pred eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 413 WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 413 ~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
.....+ .|++||+.|++.....+ ..+|+.+++. +. ..+.++.......+.|+|||+.|++.+..... ..+
T Consensus 322 ~~~~~~-~~spdg~~i~~~~~~~~--~~~i~~~d~~--~~----~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~-~~l 391 (417)
T TIGR02800 322 GYNASP-SWSPDGDLIAFVHREGG--GFNIAVMDLD--GG----GERVLTDTGLDESPSFAPNGRMILYATTRGGR-GVL 391 (417)
T ss_pred CCccCe-EECCCCCEEEEEEccCC--ceEEEEEeCC--CC----CeEEccCCCCCCCceECCCCCEEEEEEeCCCc-EEE
Confidence 434444 49999999999887653 3678888883 32 45566654344556999999999999876544 567
Q ss_pred EEEEcCCCceeEeec
Q 004067 493 LLCSLQDGSLVLPLY 507 (776)
Q Consensus 493 ~~~~~~~~~~~~~l~ 507 (776)
++.+. +|...+.++
T Consensus 392 ~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 392 GLVST-DGRFRARLP 405 (417)
T ss_pred EEEEC-CCceeeECC
Confidence 77665 555455554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=173.55 Aligned_cols=205 Identities=15% Similarity=0.214 Sum_probs=156.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
...|+|||||+.|+|.....+. ...+|++++++++..++.+... ....+.|||
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g------------------------~~~~P~fsp-- 247 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNG------------------------NNGAPAFSP-- 247 (425)
T ss_pred eeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCC------------------------ccCCccCCC--
Confidence 3678999999999999764432 2689999999999877775322 344678999
Q ss_pred CCceEEEEeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeC
Q 004067 137 SKKKIIMVPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 137 ~dg~~l~~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~ 208 (776)
||++|+|.. ..+||++|+.++..+ +|+...+. ...|.|||||++|+|+++. +||++++++++.+++|..
T Consensus 248 -DG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi-~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 248 -DGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGI-NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred -CCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCcc-ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 999999983 346999999999988 88887764 6699999999999999985 799999999999999987
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
... ...+.|||||++|+|.+...++ ..+.
T Consensus 325 ~~~------------------~~~p~~SpdG~~i~~~~~~~g~---------------------------------~~i~ 353 (425)
T COG0823 325 GGG------------------NSNPVWSPDGDKIVFESSSGGQ---------------------------------WDID 353 (425)
T ss_pred CCC------------------CcCccCCCCCCEEEEEeccCCc---------------------------------eeeE
Confidence 654 1245699999999998743221 4577
Q ss_pred EEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 289 VVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 289 ~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
+.|+.++. .+.++ .......+.|+|||+.+.+.+... ....+...+..+...+.
T Consensus 354 ~~~~~~~~~~~~lt----------~~~~~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g~~~~~ 408 (425)
T COG0823 354 KNDLASGGKIRILT----------STYLNESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDGRVSRP 408 (425)
T ss_pred EeccCCCCcEEEcc----------ccccCCCCCcCCCCceEEEeccCC-CCceEEEeeccceeEEE
Confidence 78887766 33332 233455689999999888877655 55667777765544433
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-15 Score=149.37 Aligned_cols=230 Identities=12% Similarity=0.062 Sum_probs=149.1
Q ss_pred eeCCCCCEEEEEECCcEEEEecCCCceeEEeeC-CCC-C---ceecCCcccceecccCCcceEEECCCCCeEEEEEecCC
Q 004067 176 HLSSDGTMIAFVRDCELHVLNLLINEQRQLTHG-ANG-N---TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSS 250 (776)
Q Consensus 176 ~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 250 (776)
.-+-||++|+|...++||++|+++-..+.|.-+ +-. . ........+. +.++- -+|..|++++.
T Consensus 273 ~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyl--------edfa~-~~Gd~ia~VSR--- 340 (668)
T COG4946 273 NANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYL--------EDFAV-VNGDYIALVSR--- 340 (668)
T ss_pred ccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhh--------hhhcc-CCCcEEEEEec---
Confidence 446799999999999999999999888877554 211 0 0011011110 11222 25888888774
Q ss_pred CCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEE
Q 004067 251 EIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQ 330 (776)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~ 330 (776)
.+.++.+...+-..++ ++.+.+.-..++-|++.++.
T Consensus 341 ----------------------------------GkaFi~~~~~~~~iqv----------~~~~~VrY~r~~~~~e~~vi 376 (668)
T COG4946 341 ----------------------------------GKAFIMRPWDGYSIQV----------GKKGGVRYRRIQVDPEGDVI 376 (668)
T ss_pred ----------------------------------CcEEEECCCCCeeEEc----------CCCCceEEEEEccCCcceEE
Confidence 3457777666655554 23334666777888875555
Q ss_pred EEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecccc
Q 004067 331 VLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE 410 (776)
Q Consensus 331 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~ 410 (776)
..+.+ ..|.++|.++|+.+++..+-+...... . +. +++.+.+++... +||++|+++++.+.+..
T Consensus 377 gt~dg---D~l~iyd~~~~e~kr~e~~lg~I~av~---v-------s~-dGK~~vvaNdr~--el~vididngnv~~idk 440 (668)
T COG4946 377 GTNDG---DKLGIYDKDGGEVKRIEKDLGNIEAVK---V-------SP-DGKKVVVANDRF--ELWVIDIDNGNVRLIDK 440 (668)
T ss_pred eccCC---ceEEEEecCCceEEEeeCCccceEEEE---E-------cC-CCcEEEEEcCce--EEEEEEecCCCeeEecc
Confidence 54332 258899999999998876654433221 1 12 334555565555 89999999999999987
Q ss_pred CCeE-EEEEEeecCCCcEEEEEEccCC-CceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCC
Q 004067 411 GDWM-VEQIVGVNEASGQVYFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSL 486 (776)
Q Consensus 411 ~~~~-~~~~~~~s~dg~~i~~~~~~~~-~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~ 486 (776)
.... +..+. |+|++++|+|.--..- ...++||.+. +| .+-.+|...+ ..+++|.|||++|.|.+...
T Consensus 441 S~~~lItdf~-~~~nsr~iAYafP~gy~tq~Iklydm~---~~-----Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 441 SEYGLITDFD-WHPNSRWIAYAFPEGYYTQSIKLYDMD---GG-----KIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred cccceeEEEE-EcCCceeEEEecCcceeeeeEEEEecC---CC-----eEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 7544 44554 9999999988854211 1224555554 22 5777777654 45779999999999987654
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-17 Score=165.90 Aligned_cols=228 Identities=17% Similarity=0.164 Sum_probs=156.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARR 602 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~~ 602 (776)
.+.+.++..+| .+.+.+|.|.. ...|+||++|||+....-.+ .+...+..|+. .|+.|+++|||...+.
T Consensus 57 ~~~~~i~~~~g-~i~~~~y~P~~-----~~~p~vv~~HGGg~~~g~~~----~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTPYG-QVETRLYYPQP-----DSQATLFYLHGGGFILGNLD----THDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecCCC-ceEEEEECCCC-----CCCCEEEEEeCCcccCCCch----hhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 66778887777 59999999964 24589999999875432111 22334666765 6999999999965432
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC------CCceEEEEEcCCCC
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVT 673 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~------~~~~~~~v~~~~~~ 673 (776)
. + ....+|+.++++|+.++ ..+|.++|+|+|+|+||.+++.++.+. +..++++++.+|+.
T Consensus 127 ~--~---------p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 R--F---------PQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred C--C---------CCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 1 1 12378999999999764 457889999999999999999988642 35678889988877
Q ss_pred Ccccccc--c---------------ccccccCCCCCCccchhcCChh-hhhccCCCcEEEEecCCCCccChHHHHHHHHH
Q 004067 674 SWDGYDT--F---------------YTEKYMGLPSEDPVGYEYSSVM-HHVHKMKGKLLLVHGMIDENVHFRHTARLINA 735 (776)
Q Consensus 674 ~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 735 (776)
+...... . +...|++.+...... ..++. ..+..--.|++|++|+.|... .++..+.++
T Consensus 196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p--~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~ 271 (318)
T PRK10162 196 GLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESP--YYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQT 271 (318)
T ss_pred CCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCc--ccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHH
Confidence 6421100 0 001111111100000 01111 112122369999999999886 478999999
Q ss_pred HHHCCCCeEEEEecCCCCCCCCC----CcHHHHHHHHHHHHHHhC
Q 004067 736 LVAARKPYEILIFPDERHMPRRH----RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 736 l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l 776 (776)
|+++|++++++++++..|.|... ....+.++.+.+||+++|
T Consensus 272 L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~ 316 (318)
T PRK10162 272 LAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQL 316 (318)
T ss_pred HHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987432 335678888999998865
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-16 Score=150.21 Aligned_cols=303 Identities=13% Similarity=0.077 Sum_probs=195.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+-..+|||||++|+ .|.+...+.+||+++..+-- ...|+ .=+...+|||
T Consensus 118 Vl~~~fsp~g~~l~-----tGsGD~TvR~WD~~TeTp~~t~KgH~------------------------~WVlcvawsP- 167 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLV-----TGSGDTTVRLWDLDTETPLFTCKGHK------------------------NWVLCVAWSP- 167 (480)
T ss_pred EEEEEecCCCceEE-----ecCCCceEEeeccCCCCcceeecCCc------------------------cEEEEEEECC-
Confidence 56889999999999 55566899999999987632 22221 2377899999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccc-eecCCCCCCCccCcee-----CCCCCEEEEEE-CCcEEEEecCCCceeEEee
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPE-LKLSSSSCSPVIDPHL-----SSDGTMIAFVR-DCELHVLNLLINEQRQLTH 207 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~-----SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~ 207 (776)
||++|+.. .++.|-+||..+|+.. ..|..+... +..++| .|..++||..+ ++++.+||+..|.......
T Consensus 168 --Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~-It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 168 --DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKW-ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred --CcchhhccccCCeEEEecCCCCCcccccccCcccc-eeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence 99999987 7899999999888766 355544433 666665 45788888776 5789999999887766554
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.... + +.-+.|--+| ++|....+ ..|
T Consensus 245 gHT~-------~----------VTCvrwGG~g--liySgS~D-----------------------------------rtI 270 (480)
T KOG0271|consen 245 GHTA-------S----------VTCVRWGGEG--LIYSGSQD-----------------------------------RTI 270 (480)
T ss_pred cCcc-------c----------eEEEEEcCCc--eEEecCCC-----------------------------------ceE
Confidence 3321 0 3456786444 55544221 346
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec-----------cCC-------------------------eEEEEE
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-----------HGN-------------------------ILTAQV 331 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-----------pDg-------------------------~~l~~~ 331 (776)
.+|+...|+.... +.++...+..++.| |-| +.++..
T Consensus 271 kvw~a~dG~~~r~--------lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 271 KVWRALDGKLCRE--------LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred EEEEccchhHHHh--------hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 7777766654322 13444444444444 222 235555
Q ss_pred EeecCceEEEEEEECCCCc--eEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eecc
Q 004067 332 LNRSQTKLKVLKFDIKTGQ--RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPI 408 (776)
Q Consensus 332 ~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~l 408 (776)
+ ++.++++|++.... .++++.+.... ..-.|+| ++.++.++..+. .+.+|+-.+|+ ...+
T Consensus 343 s----Dd~tlflW~p~~~kkpi~rmtgHq~lV---n~V~fSP--------d~r~IASaSFDk--SVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 343 S----DDFTLFLWNPFKSKKPITRMTGHQALV---NHVSFSP--------DGRYIASASFDK--SVKLWDGRTGKFLASF 405 (480)
T ss_pred c----CCceEEEecccccccchhhhhchhhhe---eeEEECC--------CccEEEEeeccc--ceeeeeCCCcchhhhh
Confidence 4 67789999985432 34555554331 1223555 334555555565 88899976665 3334
Q ss_pred ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC-CCeEEEEEcCCcCEEEEE
Q 004067 409 TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDF 482 (776)
Q Consensus 409 t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~ 482 (776)
-.+-..|... .||.|.+ ++++.+.+.+ +++|++...+ ....|+.+ +.++.+.|||||++++-.
T Consensus 406 RGHv~~VYqv-awsaDsR-LlVS~SkDsT--LKvw~V~tkK-------l~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 406 RGHVAAVYQV-AWSADSR-LLVSGSKDST--LKVWDVRTKK-------LKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred hhccceeEEE-EeccCcc-EEEEcCCCce--EEEEEeeeee-------ecccCCCCCceEEEEEecCCCceeecC
Confidence 3344445555 4999987 6777777665 8999998632 44556644 357899999999987643
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=158.72 Aligned_cols=191 Identities=13% Similarity=0.082 Sum_probs=124.6
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh--hhhhhhccCC
Q 004067 539 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF--EASIKHNCGR 616 (776)
Q Consensus 539 ~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~--~~~~~~~~~~ 616 (776)
+++|.|++.. +++|+||++||+++.... +...+ .+...+.+.||+|++||++|++.....+ ........+.
T Consensus 1 ~~ly~P~~~~---~~~P~vv~lHG~~~~~~~---~~~~~-~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~ 73 (212)
T TIGR01840 1 MYVYVPAGLT---GPRALVLALHGCGQTASA---YVIDW-GWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGT 73 (212)
T ss_pred CEEEcCCCCC---CCCCEEEEeCCCCCCHHH---Hhhhc-ChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCC
Confidence 4688897742 578999999998765431 11011 1355666789999999999987543322 1111111223
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--ccccccccccCCCCCCc
Q 004067 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YDTFYTEKYMGLPSEDP 694 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 694 (776)
.+..|+...++++.++..+|.++|+|+||||||++++.+++++|++|.++++.++...... ....... +..+ ...
T Consensus 74 ~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~-~~~ 150 (212)
T TIGR01840 74 GEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQ--MCTA-ATA 150 (212)
T ss_pred ccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhh--cCCC-CCH
Confidence 4578889999999988778999999999999999999999999999999988887642110 0000000 0000 000
Q ss_pred cchhcC--ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHC
Q 004067 695 VGYEYS--SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 739 (776)
Q Consensus 695 ~~~~~~--~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 739 (776)
..+... ...........|++++||.+|.+||+..+..+++++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 151 ASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 001000 000111223356789999999999999999999999775
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=163.48 Aligned_cols=235 Identities=14% Similarity=0.116 Sum_probs=145.9
Q ss_pred hhhccCCCCceEEEEEcCCCc--EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEE
Q 004067 515 RIKRLQLEPPDIVQIQANDGT--VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVW 592 (776)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 592 (776)
.++.+.+ ....+.+...+|. ++++....+ ...|.|||+||.++... .|..++..|.+.||.|+
T Consensus 13 ~~~~~~~-~~~~~~~~~~~~~~~~i~y~~~G~-------~~~~~lvliHG~~~~~~-------~w~~~~~~L~~~gy~vi 77 (302)
T PRK00870 13 NLPDYPF-APHYVDVDDGDGGPLRMHYVDEGP-------ADGPPVLLLHGEPSWSY-------LYRKMIPILAAAGHRVI 77 (302)
T ss_pred CCcCCCC-CceeEeecCCCCceEEEEEEecCC-------CCCCEEEEECCCCCchh-------hHHHHHHHHHhCCCEEE
Confidence 3344444 4445555543443 455544321 12368999999765433 35556778888899999
Q ss_pred EECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 593 KLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 593 ~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
++|+||+|.|...... ..+.++++.+.+..+.++. +.+++.++||||||.+++.++.++|+.++++++.++.
T Consensus 78 ~~Dl~G~G~S~~~~~~------~~~~~~~~a~~l~~~l~~l--~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 78 APDLIGFGRSDKPTRR------EDYTYARHVEWMRSWFEQL--DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred EECCCCCCCCCCCCCc------ccCCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 9999999988542110 1123555555555555443 4468999999999999999999999999999988753
Q ss_pred CCccc------c---cc------------ccc------------ccccCCC-CC---C-ccchhc------CC-------
Q 004067 673 TSWDG------Y---DT------------FYT------------EKYMGLP-SE---D-PVGYEY------SS------- 701 (776)
Q Consensus 673 ~~~~~------~---~~------------~~~------------~~~~~~~-~~---~-~~~~~~------~~------- 701 (776)
..... + .. .+. ..+.... .. . ...+.. ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 150 LPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 21000 0 00 000 0000000 00 0 000000 00
Q ss_pred -hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 702 -VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 702 -~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
....+.++++|+|+++|+.|..++... ..+.+.+.. .....+.+++++||.+ ..+.++.+.+.+.+||+++
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~-~~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPG-AAGQPHPTIKGAGHFL-QEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhccc-ccccceeeecCCCccc-hhhChHHHHHHHHHHHhcC
Confidence 012356788999999999999999755 666555532 1123478999999987 6788899999999999875
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=175.18 Aligned_cols=191 Identities=18% Similarity=0.265 Sum_probs=146.1
Q ss_pred hhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC--CCC------------CCcEEEEee
Q 004067 580 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG--LAK------------VGHIGLYGW 645 (776)
Q Consensus 580 ~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~id------------~~~i~l~G~ 645 (776)
..++|+.+||+|+.+|.||+++|+..+. .++..+.+|..++|+|+..+. +.| ..+|+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 4578999999999999999999876542 234557899999999998542 123 579999999
Q ss_pred chHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-c--------cc--------c----ccc------cCC---------
Q 004067 646 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T--------FY--------T----EKY------MGL--------- 689 (776)
Q Consensus 646 S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-~--------~~--------~----~~~------~~~--------- 689 (776)
||||++++.+|+..|..++|+|+.+++.+|..+. . .| . .+. ...
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 9999999999998888999999999998764221 0 00 0 000 000
Q ss_pred ---------CCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCc
Q 004067 690 ---------PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRD 760 (776)
Q Consensus 690 ---------~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 760 (776)
.....+.|...++..++.++++|+|++||..|..+++.++.++++++++.+.+.++.+.++ +|.......
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~ 504 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQ 504 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchh
Confidence 0011233455677788899999999999999999999999999999999888888877765 786544445
Q ss_pred HHHHHHHHHHHHHHhC
Q 004067 761 RIYMEERIWEFIERTL 776 (776)
Q Consensus 761 ~~~~~~~~~~fl~~~l 776 (776)
..++.+.+.+||+++|
T Consensus 505 ~~d~~e~~~~Wfd~~L 520 (767)
T PRK05371 505 SIDFRDTMNAWFTHKL 520 (767)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6788899999999886
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=153.95 Aligned_cols=185 Identities=13% Similarity=0.098 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC----chhhhhhhhhccCC-------ccHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR----GLKFEASIKHNCGR-------IDAE 620 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~----~~~~~~~~~~~~~~-------~~~~ 620 (776)
++.|+||++||.+++.. .+..++..|...++.+..+.++|...+ +..|.... ..... ....
T Consensus 14 ~~~~~vIlLHG~G~~~~-------~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~ 85 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPV-------AMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMP 85 (232)
T ss_pred CCCcEEEEEeCCCCChH-------HHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHH
Confidence 45689999999776644 234457778776655555555543211 22221100 00000 1123
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcC
Q 004067 621 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYS 700 (776)
Q Consensus 621 D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (776)
.+.+.++++.++..++.++|+++|+|+||.+++.++.++|+.+.++++.++... ..+.
T Consensus 86 ~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-------------~~~~--------- 143 (232)
T PRK11460 86 TFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-------------SLPE--------- 143 (232)
T ss_pred HHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-------------cccc---------
Confidence 344566666666667888999999999999999999989988888887765321 0000
Q ss_pred ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 701 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 701 ~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
....+.|+|++||++|.++|++.+.++.+.|++.+.++++++|++++|.+. .+..+.+.+||.+.|
T Consensus 144 -----~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~~~~l~~~l 209 (232)
T PRK11460 144 -----TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFALDRLRYTV 209 (232)
T ss_pred -----cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHHHHHHHHHc
Confidence 112368999999999999999999999999999999999999999999883 344567777776653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-15 Score=147.38 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=184.9
Q ss_pred CCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe
Q 004067 66 DNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP 145 (776)
Q Consensus 66 G~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~ 145 (776)
|.+|+|++..+| ..|||..|++|...++-|++.+ ...-.-+. ||++|+|.
T Consensus 235 ~~RvYFlsD~eG--~GnlYSvdldGkDlrrHTnFtd-------------------------YY~R~~ns---DGkrIvFq 284 (668)
T COG4946 235 GERVYFLSDHEG--VGNLYSVDLDGKDLRRHTNFTD-------------------------YYPRNANS---DGKRIVFQ 284 (668)
T ss_pred cceEEEEecccC--ccceEEeccCCchhhhcCCchh-------------------------ccccccCC---CCcEEEEe
Confidence 568999999876 4899999999999888886433 11112233 99999999
Q ss_pred CCCcEEEEeCCCCccceecCCC-CCC------CccC----c-eeCC-CCCEEEEEECCcEEEEecCCCceeEEeeCCCCC
Q 004067 146 LPDGIYFQDLSCSKPELKLSSS-SCS------PVID----P-HLSS-DGTMIAFVRDCELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~-~~~------~~~~----~-~~Sp-Dg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
..++||++|.++...+ .|.-+ +-. .... + .||+ +|.+++++++++.|+++.-.|-..|+-..+.
T Consensus 285 ~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~-- 361 (668)
T COG4946 285 NAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGG-- 361 (668)
T ss_pred cCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCc--
Confidence 9999999999998877 44332 100 0111 1 2555 8999999999999999999998888755432
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
++-..++-|++.++....++ -.|.++|.
T Consensus 362 -----------------VrY~r~~~~~e~~vigt~dg-----------------------------------D~l~iyd~ 389 (668)
T COG4946 362 -----------------VRYRRIQVDPEGDVIGTNDG-----------------------------------DKLGIYDK 389 (668)
T ss_pred -----------------eEEEEEccCCcceEEeccCC-----------------------------------ceEEEEec
Confidence 11223556666565544322 24789999
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccC
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 372 (776)
++++.+++ .+.-+.+..+..|||||.++... +..+|+++|+++|..+.+...... .+ .+-.|+|.
T Consensus 390 ~~~e~kr~---------e~~lg~I~av~vs~dGK~~vvaN----dr~el~vididngnv~~idkS~~~-lI-tdf~~~~n 454 (668)
T COG4946 390 DGGEVKRI---------EKDLGNIEAVKVSPDGKKVVVAN----DRFELWVIDIDNGNVRLIDKSEYG-LI-TDFDWHPN 454 (668)
T ss_pred CCceEEEe---------eCCccceEEEEEcCCCcEEEEEc----CceEEEEEEecCCCeeEecccccc-ee-EEEEEcCC
Confidence 99999988 45567899999999999877765 567899999999999988654432 11 11123332
Q ss_pred CCCccccCCeEEEEeccCC--ceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 373 DKGVTKYSGGFIWASEKTG--FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g--~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
. +++.-+--+| .++|.++|.+|++.-.+|.....-.++ +|+|||+++||.+..
T Consensus 455 s--------r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP-aFD~d~ryLYfLs~R 509 (668)
T COG4946 455 S--------RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP-AFDPDGRYLYFLSAR 509 (668)
T ss_pred c--------eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc-ccCCCCcEEEEEecc
Confidence 2 2333332344 368999999999998888875443444 499999999999875
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=163.57 Aligned_cols=219 Identities=11% Similarity=-0.009 Sum_probs=141.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|..+++....+ +.|+||++||.+++.. .|...+..|++. |+|+++|+||+|.|...-......
T Consensus 16 ~~~~i~y~~~G~--------~~~~vlllHG~~~~~~-------~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~ 79 (294)
T PLN02824 16 KGYNIRYQRAGT--------SGPALVLVHGFGGNAD-------HWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPP 79 (294)
T ss_pred cCeEEEEEEcCC--------CCCeEEEECCCCCChh-------HHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccc
Confidence 566676655432 1268999999877654 344556777765 799999999999886431110000
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc---cc-----------c
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW---DG-----------Y 678 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~---~~-----------~ 678 (776)
...+.++++...+..+++... .+++.++||||||++++.++.++|++++++|+.++.... .. +
T Consensus 80 -~~~~~~~~~a~~l~~~l~~l~--~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
T PLN02824 80 -NSFYTFETWGEQLNDFCSDVV--GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAF 156 (294)
T ss_pred -cccCCHHHHHHHHHHHHHHhc--CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHH
Confidence 012346666666666655432 368999999999999999999999999999998764310 00 0
Q ss_pred ccccc------------------ccc----cCCC-CCCc----------------cchh---cC----ChhhhhccCCCc
Q 004067 679 DTFYT------------------EKY----MGLP-SEDP----------------VGYE---YS----SVMHHVHKMKGK 712 (776)
Q Consensus 679 ~~~~~------------------~~~----~~~~-~~~~----------------~~~~---~~----~~~~~~~~i~~P 712 (776)
..... ... .... .... ..+. .. .....+.++++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 236 (294)
T PLN02824 157 QNLLRETAVGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCP 236 (294)
T ss_pred HHHHhchhHHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCC
Confidence 00000 000 0000 0000 0000 00 112346778999
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+|+++|++|..++...+..+.+. ....++++++++||.. ..+..+++.+.+.+||+++
T Consensus 237 ~lvi~G~~D~~~~~~~~~~~~~~----~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 237 VLIAWGEKDPWEPVELGRAYANF----DAVEDFIVLPGVGHCP-QDEAPELVNPLIESFVARH 294 (294)
T ss_pred eEEEEecCCCCCChHHHHHHHhc----CCccceEEeCCCCCCh-hhhCHHHHHHHHHHHHhcC
Confidence 99999999999998877664332 3446899999999976 6688999999999999864
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=162.69 Aligned_cols=201 Identities=16% Similarity=0.170 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+.... .|...+ ..+..+.+.||.|+++|+||+|.|....... .......+|+.++++.+
T Consensus 31 ~~ivllHG~~~~~~---~~~~~~-~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~---~~~~~~~~~l~~~l~~l----- 98 (282)
T TIGR03343 31 EAVIMLHGGGPGAG---GWSNYY-RNIGPFVDAGYRVILKDSPGFNKSDAVVMDE---QRGLVNARAVKGLMDAL----- 98 (282)
T ss_pred CeEEEECCCCCchh---hHHHHH-HHHHHHHhCCCEEEEECCCCCCCCCCCcCcc---cccchhHHHHHHHHHHc-----
Confidence 67999999765432 232211 1234566789999999999999886432110 00011234444444443
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---------ccccc-----------c---ccccCCC-
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------YDTFY-----------T---EKYMGLP- 690 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------~~~~~-----------~---~~~~~~~- 690 (776)
+.+++.++||||||++++.++.++|++++++|+.+|...... ....+ . ..+...+
T Consensus 99 -~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (282)
T TIGR03343 99 -DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQS 177 (282)
T ss_pred -CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcc
Confidence 556999999999999999999999999999998876421000 00000 0 0000000
Q ss_pred CC--------------Ccc---c---------hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 691 SE--------------DPV---G---------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 691 ~~--------------~~~---~---------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
.. ... . +...+....+.++++|+|+++|++|..+++..+.++.+.+ .+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~----~~~~ 253 (282)
T TIGR03343 178 LITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNM----PDAQ 253 (282)
T ss_pred cCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhC----CCCE
Confidence 00 000 0 0011122346788899999999999999998888877765 5789
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++++++||.. ..+.+..+.+.+.+||.
T Consensus 254 ~~~i~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 254 LHVFSRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred EEEeCCCCcCC-cccCHHHHHHHHHHHhh
Confidence 99999999987 67888999999999986
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=168.31 Aligned_cols=236 Identities=19% Similarity=0.140 Sum_probs=149.3
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..++..+.++||..+....+.+... ..+...|+||++||..++.. ..| +..++..+.+.||.|+++|+||+|++
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~-~~~~~~p~vvllHG~~g~s~--~~y---~~~~~~~~~~~g~~vv~~d~rG~G~s 143 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDR-ALPADAPVLILLPGLTGGSD--DSY---VRHMLLRARSKGWRVVVFNSRGCADS 143 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccc-cCCCCCCEEEEECCCCCCCC--CHH---HHHHHHHHHHCCCEEEEEecCCCCCC
Confidence 4566678888998777654443211 11134589999999766532 112 12235566789999999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCc--eEEEEEcCCCCCcc----
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV--FQCAVSGAPVTSWD---- 676 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~--~~~~v~~~~~~~~~---- 676 (776)
..... ..+.....+|+.++++++..+. ...++.++||||||.+++.++.++++. +.+++++++..+..
T Consensus 144 ~~~~~----~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~ 217 (388)
T PLN02511 144 PVTTP----QFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADE 217 (388)
T ss_pred CCCCc----CEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHH
Confidence 53211 1111234789999999998763 346899999999999999999998876 66666655443320
Q ss_pred --------ccccccc----------cccc-CCC---------------------------CCCc-cchhcCChhhhhccC
Q 004067 677 --------GYDTFYT----------EKYM-GLP---------------------------SEDP-VGYEYSSVMHHVHKM 709 (776)
Q Consensus 677 --------~~~~~~~----------~~~~-~~~---------------------------~~~~-~~~~~~~~~~~~~~i 709 (776)
.+...+. ...+ ..+ .... +.|...+....+.++
T Consensus 218 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I 297 (388)
T PLN02511 218 DFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHV 297 (388)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccC
Confidence 0000000 0000 000 0000 122344556678899
Q ss_pred CCcEEEEecCCCCccChHHHH-HHHHHHHHCCCCeEEEEecCCCCCCCCCCcHH------HHHHHHHHHHHHh
Q 004067 710 KGKLLLVHGMIDENVHFRHTA-RLINALVAARKPYEILIFPDERHMPRRHRDRI------YMEERIWEFIERT 775 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~-~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~------~~~~~~~~fl~~~ 775 (776)
++|+|+++|.+|+++|+.... .+. +...++++++++++||... .+... .+.+.+.+||+..
T Consensus 298 ~vPtLiI~g~dDpi~p~~~~~~~~~----~~~p~~~l~~~~~gGH~~~-~E~p~~~~~~~w~~~~i~~Fl~~~ 365 (388)
T PLN02511 298 RVPLLCIQAANDPIAPARGIPREDI----KANPNCLLIVTPSGGHLGW-VAGPEAPFGAPWTDPVVMEFLEAL 365 (388)
T ss_pred CCCeEEEEcCCCCcCCcccCcHhHH----hcCCCEEEEECCCcceecc-ccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999999999999876432 222 2346789999999999752 22222 2467888888653
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=162.96 Aligned_cols=235 Identities=16% Similarity=0.142 Sum_probs=146.4
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+.+...++.+||..+......... .+.+.|+||++||.+++.. .. ....++..|.++||.|+++|+||+|++
T Consensus 30 ~~~~~~~~~~dg~~~~l~w~~~~~---~~~~~p~vll~HG~~g~~~--~~---~~~~~~~~l~~~G~~v~~~d~rG~g~~ 101 (324)
T PRK10985 30 TPYWQRLELPDGDFVDLAWSEDPA---QARHKPRLVLFHGLEGSFN--SP---YAHGLLEAAQKRGWLGVVMHFRGCSGE 101 (324)
T ss_pred CcceeEEECCCCCEEEEecCCCCc---cCCCCCEEEEeCCCCCCCc--CH---HHHHHHHHHHHCCCEEEEEeCCCCCCC
Confidence 344455777888766544322111 1135689999999766432 11 123357788999999999999999876
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCc--eEEEEEcCCCCCcc----
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV--FQCAVSGAPVTSWD---- 676 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~--~~~~v~~~~~~~~~---- 676 (776)
...... .......+|+..+++++.++. ...+++++||||||.+++.+++++++. +.+++++++..+..
T Consensus 102 ~~~~~~----~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~ 175 (324)
T PRK10985 102 PNRLHR----IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSY 175 (324)
T ss_pred ccCCcc----eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHH
Confidence 432111 111224789999999998764 345899999999999888888776432 67777666654321
Q ss_pred --------ccccccc-----------ccccCC-----------------------CC----CCccchhcCChhhhhccCC
Q 004067 677 --------GYDTFYT-----------EKYMGL-----------------------PS----EDPVGYEYSSVMHHVHKMK 710 (776)
Q Consensus 677 --------~~~~~~~-----------~~~~~~-----------------------~~----~~~~~~~~~~~~~~~~~i~ 710 (776)
.+...+. ..+.+. +. .....|...+....+.+++
T Consensus 176 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~ 255 (324)
T PRK10985 176 RMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIR 255 (324)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCC
Confidence 0000000 000000 00 0012223344556678899
Q ss_pred CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC----CcHHHHHHHHHHHHHHh
Q 004067 711 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH----RDRIYMEERIWEFIERT 775 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~ 775 (776)
.|+|+++|++|.++++.....+.+ ...++++++++++||..... ....-..+.+.+||...
T Consensus 256 ~P~lii~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 256 KPTLIIHAKDDPFMTHEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred CCEEEEecCCCCCCChhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 999999999999998765555432 23568899999999975221 12235567788888654
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=160.84 Aligned_cols=199 Identities=16% Similarity=0.175 Sum_probs=132.7
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
+.|+||++||.+++.. .|...+..|. .+|.|+++|+||+|.+..... .....++....+..++++
T Consensus 12 ~~~~iv~lhG~~~~~~-------~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~i~~ 76 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGS-------YWAPQLDVLT-QRFHVVTYDHRGTGRSPGELP-------PGYSIAHMADDVLQLLDA 76 (257)
T ss_pred CCCEEEEEcCCCcchh-------HHHHHHHHHH-hccEEEEEcCCCCCCCCCCCc-------ccCCHHHHHHHHHHHHHH
Confidence 4588999999876543 2333455554 579999999999998864321 112345555554444443
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-c---------------c---------cccccc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T---------------F---------YTEKYM 687 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-~---------------~---------~~~~~~ 687 (776)
. +..++.++||||||++++.++.++|+.++++|+.++........ . . +...++
T Consensus 77 ~--~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
T TIGR03611 77 L--NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWI 154 (257)
T ss_pred h--CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHh
Confidence 2 44689999999999999999999999999999887654321000 0 0 000000
Q ss_pred CC--CC------------CCc-------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEE
Q 004067 688 GL--PS------------EDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 746 (776)
Q Consensus 688 ~~--~~------------~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 746 (776)
.. +. ... ..+...+....+.++++|+|+++|++|..+|++.++++++.+ .+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~ 230 (257)
T TIGR03611 155 SENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAAL----PNAQLK 230 (257)
T ss_pred hccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhc----CCceEE
Confidence 00 00 000 001112233456778899999999999999999888887765 456888
Q ss_pred EecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 747 IFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 747 ~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++++||.+ ..+.+.++.+.+.+||+
T Consensus 231 ~~~~~gH~~-~~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 231 LLPYGGHAS-NVTDPETFNRALLDFLK 256 (257)
T ss_pred EECCCCCCc-cccCHHHHHHHHHHHhc
Confidence 999999987 55688889999999986
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=164.20 Aligned_cols=236 Identities=14% Similarity=0.118 Sum_probs=147.4
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc---c----------------cccccchhhhHHHHhCCc
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC---D----------------SWINTVDMRAQYLRSKGI 589 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~---~----------------~~~~~~~~~~~~l~~~G~ 589 (776)
|.+.||..+.++.|.|++ +..+|+++||..+..... . .+......+++.|.++||
T Consensus 2 ~~~~~g~~l~~~~~~~~~------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~ 75 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGY 75 (332)
T ss_pred ccCCCCCeEEEeeeeccC------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCC
Confidence 456789999999998853 447999999966554210 0 000011245889999999
Q ss_pred EEEEECCCCCCCCchhhhhhhh-hccCCccHHHHHHHHHHHHHc------------------CCCCCCcEEEEeechHHH
Q 004067 590 LVWKLDNRGTARRGLKFEASIK-HNCGRIDAEDQLTGAEWLIKQ------------------GLAKVGHIGLYGWSYGGY 650 (776)
Q Consensus 590 ~v~~~d~rg~g~~~~~~~~~~~-~~~~~~~~~D~~~~i~~l~~~------------------~~id~~~i~l~G~S~GG~ 650 (776)
.|+++|+||||.+...-..... ..+ ...++|+...++.+.+. .+-...+++|+||||||.
T Consensus 76 ~V~~~D~rGHG~S~~~~~~~g~~~~~-~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~ 154 (332)
T TIGR01607 76 SVYGLDLQGHGESDGLQNLRGHINCF-DDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGN 154 (332)
T ss_pred cEEEecccccCCCccccccccchhhH-HHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccH
Confidence 9999999999987532110000 000 11246677777766541 111135799999999999
Q ss_pred HHHHHHhhCCC--------ceEEEEEcCCCCCcccc--------c----------ccccccc-cCC-------CCC----
Q 004067 651 LSAITLARFPD--------VFQCAVSGAPVTSWDGY--------D----------TFYTEKY-MGL-------PSE---- 692 (776)
Q Consensus 651 ~a~~~a~~~~~--------~~~~~v~~~~~~~~~~~--------~----------~~~~~~~-~~~-------~~~---- 692 (776)
+++.++..+++ .++++|+.+|....... . ..+...+ ... +..
T Consensus 155 i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 234 (332)
T TIGR01607 155 IALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDII 234 (332)
T ss_pred HHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHH
Confidence 99998865432 57888877775321100 0 0000000 000 000
Q ss_pred --Cccchh-------------cC-ChhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 693 --DPVGYE-------------YS-SVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 693 --~~~~~~-------------~~-~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
++-.+. .. .....+.++ +.|+|+++|++|.++++..+..+++++.. .+.++.++++++|.
T Consensus 235 ~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~ 312 (332)
T TIGR01607 235 KFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHV 312 (332)
T ss_pred hcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCC
Confidence 000000 00 001123445 57999999999999999998888876532 45788999999999
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 004067 755 PRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 755 ~~~~~~~~~~~~~~~~fl~ 773 (776)
+.....++++.+.+.+||+
T Consensus 313 i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 313 ITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CccCCCHHHHHHHHHHHhh
Confidence 8776668899999999986
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=159.04 Aligned_cols=213 Identities=16% Similarity=0.123 Sum_probs=139.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|.+++++..... ...|.|||+||.+++.. .|..++..|.+ +|.|+++|+||+|.|.....
T Consensus 10 ~~~~~~~~~~~~~------~~~~plvllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~----- 70 (276)
T TIGR02240 10 DGQSIRTAVRPGK------EGLTPLLIFNGIGANLE-------LVFPFIEALDP-DLEVIAFDVPGVGGSSTPRH----- 70 (276)
T ss_pred CCcEEEEEEecCC------CCCCcEEEEeCCCcchH-------HHHHHHHHhcc-CceEEEECCCCCCCCCCCCC-----
Confidence 6777888765321 12267899999766543 23445666654 69999999999998864211
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-------c---c---c
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-------G---Y---D 679 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~-------~---~---~ 679 (776)
....+++.+.+..+++.. +.+++.|+||||||.+++.+|.++|++++++|+.++..... . . .
T Consensus 71 ---~~~~~~~~~~~~~~i~~l--~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (276)
T TIGR02240 71 ---PYRFPGLAKLAARMLDYL--DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPR 145 (276)
T ss_pred ---cCcHHHHHHHHHHHHHHh--CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCch
Confidence 122444444444444432 34589999999999999999999999999999987654210 0 0 0
Q ss_pred ccccc--------cccC-----CCCCC-----------c-cch------hcCChhhhhccCCCcEEEEecCCCCccChHH
Q 004067 680 TFYTE--------KYMG-----LPSED-----------P-VGY------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 680 ~~~~~--------~~~~-----~~~~~-----------~-~~~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 728 (776)
..... .+.. .+... . ..+ ........+.++++|+|+++|++|..+++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~ 225 (276)
T TIGR02240 146 RYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLIN 225 (276)
T ss_pred hhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHH
Confidence 00000 0000 00000 0 000 0011224467889999999999999999998
Q ss_pred HHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 729 TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 729 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++++.+.+ .+.+++++++ ||.+ ..+.++++.+.+.+|+++.
T Consensus 226 ~~~l~~~~----~~~~~~~i~~-gH~~-~~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 226 MRLLAWRI----PNAELHIIDD-GHLF-LITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred HHHHHHhC----CCCEEEEEcC-CCch-hhccHHHHHHHHHHHHHHh
Confidence 88887765 4567888875 9986 5678899999999999863
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-15 Score=147.16 Aligned_cols=300 Identities=14% Similarity=0.158 Sum_probs=163.7
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
.+..|.+||+++.|.+..++ ..++|++|+++++.+|||+.+. .+.....++|
T Consensus 39 ~~~~ft~dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~g-----------------------~~~~g~~~s~--- 90 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGPG-----------------------DNTFGGFLSP--- 90 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS------------------------B-TTT-EE-T---
T ss_pred cCCCcCCCCCEEEEEeccCC--CcceEEEEcccCEEEECccCCC-----------------------CCccceEEec---
Confidence 78899999999999998665 4899999999999999997432 1223456888
Q ss_pred CceEEEEeC-CCcEEEEeCCCCccceecCCCCCCCccCcee--CCCCCEEEEEEC-----------------------Cc
Q 004067 138 KKKIIMVPL-PDGIYFQDLSCSKPELKLSSSSCSPVIDPHL--SSDGTMIAFVRD-----------------------CE 191 (776)
Q Consensus 138 dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~--SpDg~~la~~~~-----------------------~~ 191 (776)
+++.|+|.. ...|+.+|+++.+.+ .+-..+..-.....| ..|+.+++.+.. ..
T Consensus 91 ~~~~~~Yv~~~~~l~~vdL~T~e~~-~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 91 DDRALYYVKNGRSLRRVDLDTLEER-VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp TSSEEEEEETTTEEEEEETTT--EE-EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred CCCeEEEEECCCeEEEEECCcCcEE-EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 999998875 458999999999987 554434333433455 458888887752 14
Q ss_pred EEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCC-CCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 192 LHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD-SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 192 l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
|+.+++++|+.+.+..... |+ ..+.+||. ...|.|--. ....
T Consensus 170 i~~idl~tG~~~~v~~~~~----------wl--------gH~~fsP~dp~li~fCHE-Gpw~------------------ 212 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFEDTD----------WL--------GHVQFSPTDPTLIMFCHE-GPWD------------------ 212 (386)
T ss_dssp EEEEETTT--EEEEEEESS-----------E--------EEEEEETTEEEEEEEEE--S-TT------------------
T ss_pred EEEEECCCCceeEEEecCc----------cc--------cCcccCCCCCCEEEEecc-CCcc------------------
Confidence 9999999999988876543 22 25667774 556666432 1110
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEe-ecCceEEEEEEECCCC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN-RSQTKLKVLKFDIKTG 349 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~-~~~~~~~l~~~d~~~g 349 (776)
.....|++.+.+++..+.+.. ......+..--|+|||+.|++.+. ++.....|+.+|++++
T Consensus 213 -----------~Vd~RiW~i~~dg~~~~~v~~-------~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 213 -----------LVDQRIWTINTDGSNVKKVHR-------RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp -----------TSS-SEEEEETTS---EESS----------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred -----------eeceEEEEEEcCCCcceeeec-------CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 011357999999888887743 223567788899999997777655 4445778999999999
Q ss_pred ceEEEEEeccCceeecccccccCCCCccccCCe-EEEEecc-----CCceEEEEEeCCCceeeccccCC--eEE------
Q 004067 350 QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK-----TGFRHLYLHDINGTCLGPITEGD--WMV------ 415 (776)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-----~g~~~l~~~~~~g~~~~~lt~~~--~~~------ 415 (776)
+.+.+..-+.... -..++.+.-+.-|++. -.-+.+. .+..-||++++..+....|..++ +.+
T Consensus 275 ~~~~~~~~p~~~H----~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 275 ERRRLMEMPWCSH----FMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp -EEEEEEE-SEEE----EEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred CceEEEeCCceee----eEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 8877654321100 0011111000111110 0000000 12347888888887766665542 111
Q ss_pred --EEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 416 --EQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 416 --~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
--.+.||||||+|+|+++..++ ..||.+.+
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~~G~--~~vY~v~i 382 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDMEGP--PAVYLVEI 382 (386)
T ss_dssp TT----EE-TTSSEEEEEE-TTSS---EEEEEE-
T ss_pred cCCCCCccCCCCCEEEEECCCCCC--ccEEEEeC
Confidence 1224599999999999999876 78998887
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-16 Score=157.65 Aligned_cols=216 Identities=14% Similarity=0.040 Sum_probs=139.1
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+...++..+.+....+. +.|+||++||.++... .|..+...|++ +|.|+++|+||+|.+.....
T Consensus 10 ~~~~~~~~~~~~~~g~~-------~~~~vv~~hG~~~~~~-------~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~- 73 (278)
T TIGR03056 10 RVTVGPFHWHVQDMGPT-------AGPLLLLLHGTGASTH-------SWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFR- 73 (278)
T ss_pred eeeECCEEEEEEecCCC-------CCCeEEEEcCCCCCHH-------HHHHHHHHHhh-CcEEEeecCCCCCCCCCccc-
Confidence 33346776776554332 2378999999766543 23445666654 69999999999998754321
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--------c-c
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--------Y-D 679 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~--------~-~ 679 (776)
....++++.+.+..+++.. +.++++|+||||||.+++.++.++|++++++++.++...... + .
T Consensus 74 ------~~~~~~~~~~~l~~~i~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~ 145 (278)
T TIGR03056 74 ------FRFTLPSMAEDLSALCAAE--GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMA 145 (278)
T ss_pred ------cCCCHHHHHHHHHHHHHHc--CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhh
Confidence 1123556666666665543 335789999999999999999999998888887765432100 0 0
Q ss_pred cc-----cc--------------ccccC---CCCC--Cccchh--------------------cCChhhhhccCCCcEEE
Q 004067 680 TF-----YT--------------EKYMG---LPSE--DPVGYE--------------------YSSVMHHVHKMKGKLLL 715 (776)
Q Consensus 680 ~~-----~~--------------~~~~~---~~~~--~~~~~~--------------------~~~~~~~~~~i~~P~li 715 (776)
.. +. ..+.. .... ....+. .......+.++++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~li 225 (278)
T TIGR03056 146 RVLACNPFTPPMMSRGAADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHL 225 (278)
T ss_pred HhhhhcccchHHHHhhcccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEE
Confidence 00 00 00000 0000 000000 00012235667899999
Q ss_pred EecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 716 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
++|++|..+|+...+.+.+.+ .++++.+++++||.+ ..+..+++.+.+.+||+
T Consensus 226 i~g~~D~~vp~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 226 IAGEEDKAVPPDESKRAATRV----PTATLHVVPGGGHLV-HEEQADGVVGLILQAAE 278 (278)
T ss_pred EEeCCCcccCHHHHHHHHHhc----cCCeEEEECCCCCcc-cccCHHHHHHHHHHHhC
Confidence 999999999988877776654 456899999999987 55678899999999974
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.6e-16 Score=155.10 Aligned_cols=231 Identities=16% Similarity=0.117 Sum_probs=145.8
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~ 604 (776)
+.+.|.. +|..+.+.++.|.+. +.+.||++|||+.... .+...+..+++.|+++||.|+++|+||+|.|..
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~-----~~~~vv~i~gg~~~~~---g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~ 73 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS-----HTTGVLIVVGGPQYRV---GSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEG 73 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC-----CCCeEEEEeCCccccC---CchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCC
Confidence 4567775 578899999999753 2356777777654321 011123345788999999999999999998754
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc------c
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------Y 678 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~------~ 678 (776)
... ... ....|+.++++++.+... ..++|+++||||||.+++.++.. +..++++|+.+|...... .
T Consensus 74 ~~~--~~~----~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~ 145 (274)
T TIGR03100 74 ENL--GFE----GIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRI 145 (274)
T ss_pred CCC--CHH----HHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHH
Confidence 321 111 135789999999987521 23579999999999999998765 467899999988743110 0
Q ss_pred ccccc---------ccccCCCCCCc---cc-------h-----------hcCChhhhhccCCCcEEEEecCCCCccChHH
Q 004067 679 DTFYT---------EKYMGLPSEDP---VG-------Y-----------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 679 ~~~~~---------~~~~~~~~~~~---~~-------~-----------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 728 (776)
...+. ..+....+... .. + ........+..+++|+|+++|..|...+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~ 225 (274)
T TIGR03100 146 RHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFA 225 (274)
T ss_pred HHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHH
Confidence 00000 00000000000 00 0 0001123355778999999999998753111
Q ss_pred H-----HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 729 T-----ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 729 ~-----~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
. ....+.+. ..++++..+++++|.+.....++++.+.+.+||++
T Consensus 226 ~~~~~~~~~~~~l~--~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 226 DSVLGEPAWRGALE--DPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHhccChhhHHHhh--cCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 0 11212221 25688999999999887777889999999999963
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.8e-16 Score=154.64 Aligned_cols=198 Identities=13% Similarity=0.063 Sum_probs=130.3
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
+|||+||.+.+.. .|...+..|++.||.|+++|+||+|.|..... .....+++...+..+++.-
T Consensus 5 ~vvllHG~~~~~~-------~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~l-- 68 (255)
T PLN02965 5 HFVFVHGASHGAW-------CWYKLATLLDAAGFKSTCVDLTGAGISLTDSN-------TVSSSDQYNRPLFALLSDL-- 68 (255)
T ss_pred EEEEECCCCCCcC-------cHHHHHHHHhhCCceEEEecCCcCCCCCCCcc-------ccCCHHHHHHHHHHHHHhc--
Confidence 5899999765533 35556778888899999999999998853211 1122445555444444432
Q ss_pred CC-CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC---Cc---cccc-------ccccc---cccCCCC----CCc
Q 004067 636 KV-GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT---SW---DGYD-------TFYTE---KYMGLPS----EDP 694 (776)
Q Consensus 636 d~-~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~---~~---~~~~-------~~~~~---~~~~~~~----~~~ 694 (776)
+. .++.++||||||.+++.++.++|++++++|+.++.. .. ..+. ..+.. .....+. ...
T Consensus 69 ~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (255)
T PLN02965 69 PPDHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKP 148 (255)
T ss_pred CCCCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCH
Confidence 22 489999999999999999999999999988876541 10 0000 00000 0000000 000
Q ss_pred cc----h-hc--------------C-------Ch---hhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE
Q 004067 695 VG----Y-EY--------------S-------SV---MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 745 (776)
Q Consensus 695 ~~----~-~~--------------~-------~~---~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 745 (776)
.. + .. . .. ...+.+++.|+|+++|++|..+|+...+.+.+.+ .+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~----~~a~~ 224 (255)
T PLN02965 149 EFVRHYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENW----PPAQT 224 (255)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhC----CcceE
Confidence 00 0 00 0 00 0123357899999999999999998887777665 45689
Q ss_pred EEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 746 LIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 746 ~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++++++||++ ..+.++++.+.+.+|++.
T Consensus 225 ~~i~~~GH~~-~~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 225 YVLEDSDHSA-FFSVPTTLFQYLLQAVSS 252 (255)
T ss_pred EEecCCCCch-hhcCHHHHHHHHHHHHHH
Confidence 9999999988 668899999999999875
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-16 Score=158.22 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=137.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|.++++..+. ..|.||++||.+++.. .|..++..|++.+ .|+++|+||+|.|.....
T Consensus 15 ~g~~i~y~~~G---------~g~~vvllHG~~~~~~-------~w~~~~~~L~~~~-~via~D~~G~G~S~~~~~----- 72 (295)
T PRK03592 15 LGSRMAYIETG---------EGDPIVFLHGNPTSSY-------LWRNIIPHLAGLG-RCLAPDLIGMGASDKPDI----- 72 (295)
T ss_pred CCEEEEEEEeC---------CCCEEEEECCCCCCHH-------HHHHHHHHHhhCC-EEEEEcCCCCCCCCCCCC-----
Confidence 77777776543 1268999999876643 3445677787775 999999999999865321
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC---cccccc-------cc
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYDT-------FY 682 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~---~~~~~~-------~~ 682 (776)
.+...+..+.+..+++.- ..+++.++||||||.+++.++.++|++++++++.++... +..+.. .+
T Consensus 73 ---~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~ 147 (295)
T PRK03592 73 ---DYTFADHARYLDAWFDAL--GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQAL 147 (295)
T ss_pred ---CCCHHHHHHHHHHHHHHh--CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHH
Confidence 123445545454444442 346899999999999999999999999999998886321 110000 00
Q ss_pred c----------------ccccCCC---CCCcc---ch-----------------hcC--------------ChhhhhccC
Q 004067 683 T----------------EKYMGLP---SEDPV---GY-----------------EYS--------------SVMHHVHKM 709 (776)
Q Consensus 683 ~----------------~~~~~~~---~~~~~---~~-----------------~~~--------------~~~~~~~~i 709 (776)
. ....... ....+ .+ ... .....+.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 227 (295)
T PRK03592 148 RSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATS 227 (295)
T ss_pred hCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccC
Confidence 0 0000000 00000 00 000 001224567
Q ss_pred CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++|+|+++|.+|..+++....++...+. .+.++.+++++||.. ..+.++++.+.+.+||.+.
T Consensus 228 ~~P~lii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~-~~e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 228 DVPKLLINAEPGAILTTGAIRDWCRSWP---NQLEITVFGAGLHFA-QEDSPEEIGAAIAAWLRRL 289 (295)
T ss_pred CCCeEEEeccCCcccCcHHHHHHHHHhh---hhcceeeccCcchhh-hhcCHHHHHHHHHHHHHHh
Confidence 8999999999999996655555544432 356888999999987 5678899999999999864
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-16 Score=164.38 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=145.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH---hCCcEEEEECCCCCCCCch
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR---SKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~d~rg~g~~~~ 604 (776)
.+.+..+.++++....|.+. ...|.|||+||.+++.. .|.. .....|. +.+|.|+++|+||+|.|..
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~----~~k~~VVLlHG~~~s~~---~W~~---~~~~~L~~~~~~~yrVia~Dl~G~G~S~~ 248 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDN----KAKEDVLFIHGFISSSA---FWTE---TLFPNFSDAAKSTYRLFAVDLLGFGRSPK 248 (481)
T ss_pred eeEeeCCeEEEEEEecCCCC----CCCCeEEEECCCCccHH---HHHH---HHHHHHHHHhhCCCEEEEECCCCCCCCcC
Confidence 44444567899999988763 23478999999876643 2321 1123333 4799999999999998864
Q ss_pred hhhhhhhhccCCccHHHHHHHHH-HHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-----
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----- 678 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~----- 678 (776)
... ..+.+++..+.+. .+.+.. +.+++.++||||||++++.++.++|++++++++.++.......
T Consensus 249 p~~-------~~ytl~~~a~~l~~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~ 319 (481)
T PLN03087 249 PAD-------SLYTLREHLEMIERSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQAT 319 (481)
T ss_pred CCC-------CcCCHHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHH
Confidence 311 1123555555552 444433 3468999999999999999999999999999988754211000
Q ss_pred ---------cccccc---------ccc---C--------------------CCCCCccchh----cC--Ch---------
Q 004067 679 ---------DTFYTE---------KYM---G--------------------LPSEDPVGYE----YS--SV--------- 702 (776)
Q Consensus 679 ---------~~~~~~---------~~~---~--------------------~~~~~~~~~~----~~--~~--------- 702 (776)
...+.. ++- . .+......+. .. ..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 399 (481)
T PLN03087 320 QYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNII 399 (481)
T ss_pred HHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHH
Confidence 000000 000 0 0000000000 00 00
Q ss_pred ----------h-hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHH
Q 004067 703 ----------M-HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 771 (776)
Q Consensus 703 ----------~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f 771 (776)
+ ....++++|+|+++|++|..+|++....+.+.+ .+.++++++++||.....+.+..+.+.+.+|
T Consensus 400 ~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~i----P~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F 475 (481)
T PLN03087 400 CGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKV----PRARVKVIDDKDHITIVVGRQKEFARELEEI 475 (481)
T ss_pred hchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhC----CCCEEEEeCCCCCcchhhcCHHHHHHHHHHH
Confidence 0 112268899999999999999999888887765 5679999999999864446788999999998
Q ss_pred HHH
Q 004067 772 IER 774 (776)
Q Consensus 772 l~~ 774 (776)
.+.
T Consensus 476 ~~~ 478 (481)
T PLN03087 476 WRR 478 (481)
T ss_pred hhc
Confidence 764
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=158.56 Aligned_cols=198 Identities=14% Similarity=0.114 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|+||++||.+.+.. .|..++..|. .||.|+++|+||+|.+.... ......++.+.+..+++.
T Consensus 12 ~~~~li~~hg~~~~~~-------~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~--------~~~~~~~~~~~~~~~i~~ 75 (251)
T TIGR02427 12 GAPVLVFINSLGTDLR-------MWDPVLPALT-PDFRVLRYDKRGHGLSDAPE--------GPYSIEDLADDVLALLDH 75 (251)
T ss_pred CCCeEEEEcCcccchh-------hHHHHHHHhh-cccEEEEecCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHH
Confidence 4589999999755533 2334455554 68999999999999875321 122355655555555554
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-----------------------ccccccccCC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-----------------------TFYTEKYMGL 689 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-----------------------~~~~~~~~~~ 689 (776)
. +.+++.++||||||++++.++.++|+.++++++.++........ ..+...+...
T Consensus 76 ~--~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (251)
T TIGR02427 76 L--GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREA 153 (251)
T ss_pred h--CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccC
Confidence 3 34689999999999999999999999998888776543211000 0000000000
Q ss_pred CCCCc-------------------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecC
Q 004067 690 PSEDP-------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 750 (776)
Q Consensus 690 ~~~~~-------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 750 (776)
..... ..+...+....+.++++|+++++|++|..++++....+.+.+ .+.+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~ 229 (251)
T TIGR02427 154 HPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLV----PGARFAEIRG 229 (251)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhC----CCceEEEECC
Confidence 00000 001111223445678899999999999999998777776654 4568899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHH
Q 004067 751 ERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 751 ~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
++|.. ..+.++.+.+.+.+||+
T Consensus 230 ~gH~~-~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 230 AGHIP-CVEQPEAFNAALRDFLR 251 (251)
T ss_pred CCCcc-cccChHHHHHHHHHHhC
Confidence 99987 45677888888888873
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=145.59 Aligned_cols=216 Identities=20% Similarity=0.202 Sum_probs=153.5
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.-.++|+..+|.+|++|+..|.... .+.|+|+..||..+... .|.. .-.++..||+|+.+|.||.|.+.
T Consensus 56 ~ydvTf~g~~g~rI~gwlvlP~~~~---~~~P~vV~fhGY~g~~g---~~~~-----~l~wa~~Gyavf~MdvRGQg~~~ 124 (321)
T COG3458 56 VYDVTFTGYGGARIKGWLVLPRHEK---GKLPAVVQFHGYGGRGG---EWHD-----MLHWAVAGYAVFVMDVRGQGSSS 124 (321)
T ss_pred EEEEEEeccCCceEEEEEEeecccC---CccceEEEEeeccCCCC---Cccc-----cccccccceeEEEEecccCCCcc
Confidence 3468888889999999999998753 68999999999765543 2321 23567899999999999998774
Q ss_pred hhh----hh---hhhhccC----------CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 604 LKF----EA---SIKHNCG----------RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 604 ~~~----~~---~~~~~~~----------~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
.+- .. ......| ...+.|...+++.+.+...+|.+||++.|.|.||.+++.+++..| +++++
T Consensus 125 ~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~ 203 (321)
T COG3458 125 QDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAV 203 (321)
T ss_pred ccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhcc
Confidence 321 11 0001111 124789999999999999999999999999999999999999765 57999
Q ss_pred EEcCCCCC-cccccc-----ccc--ccccC--CCCCCccc---hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHH
Q 004067 667 VSGAPVTS-WDGYDT-----FYT--EKYMG--LPSEDPVG---YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733 (776)
Q Consensus 667 v~~~~~~~-~~~~~~-----~~~--~~~~~--~~~~~~~~---~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~ 733 (776)
++..|+.. +..... .|. ..|+. .+. ..+. +.-.+....+++++.|+|+..|.-|++|||.....++
T Consensus 204 ~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~-e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~y 282 (321)
T COG3458 204 VADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPK-EAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAY 282 (321)
T ss_pred cccccccccchhheeecccCcHHHHHHHHHhcCch-HHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHh
Confidence 98888753 211100 000 01111 111 1111 2233455667899999999999999999999999999
Q ss_pred HHHHHCCCCeEEEEecCCCCCC
Q 004067 734 NALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+++. ...++.+||.-+|.-
T Consensus 283 N~l~---~~K~i~iy~~~aHe~ 301 (321)
T COG3458 283 NALT---TSKTIEIYPYFAHEG 301 (321)
T ss_pred hccc---CCceEEEeecccccc
Confidence 9883 455788888777864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-15 Score=145.58 Aligned_cols=282 Identities=11% Similarity=0.115 Sum_probs=186.7
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc--eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK--QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
++..+.||++|+++|-.+.+. ..-||.+..++.- ..++..| ..++....||
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh------------------------~~~V~yi~wS 278 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGH------------------------SQPVSYIMWS 278 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecc------------------------cCceEEEEEC
Confidence 347889999999999776644 2456776666541 2333332 3478889999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCC
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
| |.++|+.. -+..+.+||+++|+.+.....+-+......+|-|||.+++..+. +.++.|++++......- +.
T Consensus 279 P---DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~--gv- 352 (519)
T KOG0293|consen 279 P---DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE--GV- 352 (519)
T ss_pred C---CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc--cc-
Confidence 9 99999876 44569999999999883333332345778899999999776653 57999999876532221 00
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
+..++..++.++||++++....+ ..+++++
T Consensus 353 --------------r~~~v~dlait~Dgk~vl~v~~d------------------------------------~~i~l~~ 382 (519)
T KOG0293|consen 353 --------------RDPKVHDLAITYDGKYVLLVTVD------------------------------------KKIRLYN 382 (519)
T ss_pred --------------ccceeEEEEEcCCCcEEEEEecc------------------------------------cceeeec
Confidence 01125578899999999877643 3467787
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EEEEeccCceeecccccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVNLHDCFT 370 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~~~~~ 370 (776)
.++...+.+ ......+..++.|.||++++.-. ....|.+||++..... .-..+....+.. ...|.
T Consensus 383 ~e~~~dr~l---------ise~~~its~~iS~d~k~~LvnL----~~qei~LWDl~e~~lv~kY~Ghkq~~fiI-rSCFg 448 (519)
T KOG0293|consen 383 REARVDRGL---------ISEEQPITSFSISKDGKLALVNL----QDQEIHLWDLEENKLVRKYFGHKQGHFII-RSCFG 448 (519)
T ss_pred hhhhhhhcc---------ccccCceeEEEEcCCCcEEEEEc----ccCeeEEeecchhhHHHHhhcccccceEE-EeccC
Confidence 777655533 23345688899999999554433 3567999999843322 222233233332 12221
Q ss_pred cCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 371 PLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
. -++.++.+..+++ .+|+|+...|++ ..|+.+...| +.++|+|....++.+++++++ +.||...
T Consensus 449 g-------~~~~fiaSGSED~--kvyIWhr~sgkll~~LsGHs~~v-NcVswNP~~p~m~ASasDDgt--IRIWg~~ 513 (519)
T KOG0293|consen 449 G-------GNDKFIASGSEDS--KVYIWHRISGKLLAVLSGHSKTV-NCVSWNPADPEMFASASDDGT--IRIWGPS 513 (519)
T ss_pred C-------CCcceEEecCCCc--eEEEEEccCCceeEeecCCccee-eEEecCCCCHHHhhccCCCCe--EEEecCC
Confidence 1 1334666666666 999999776664 5566655444 455699999999999888876 7888765
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=145.24 Aligned_cols=285 Identities=13% Similarity=0.097 Sum_probs=177.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+..++|||||++|| .|...++|-+||+++|+. +.+..|+ ..|.+.+|-|
T Consensus 160 VlcvawsPDgk~iA-----SG~~dg~I~lwdpktg~~~g~~l~gH~------------------------K~It~Lawep 210 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIA-----SGSKDGSIRLWDPKTGQQIGRALRGHK------------------------KWITALAWEP 210 (480)
T ss_pred EEEEEECCCcchhh-----ccccCCeEEEecCCCCCcccccccCcc------------------------cceeEEeecc
Confidence 67899999999999 444456899999998875 4444433 3788899977
Q ss_pred --cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCC
Q 004067 135 --TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 135 --~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~ 209 (776)
..|..++|+.. .++++.+||+..+... .+-.+....+..+.|--+| ++|... ..|-+|+...|..-+.
T Consensus 211 ~hl~p~~r~las~skDg~vrIWd~~~~~~~-~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~---- 283 (480)
T KOG0271|consen 211 LHLVPPCRRLASSSKDGSVRIWDTKLGTCV-RTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRE---- 283 (480)
T ss_pred cccCCCccceecccCCCCEEEEEccCceEE-EEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHh----
Confidence 45578888865 7899999999998887 4434444457888886554 777764 4588888777654332
Q ss_pred CCCceecCCcccceecccCC---cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC----CCCC-
Q 004067 210 NGNTVTHGLAEYIAQEEMDR---KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF----AGAS- 281 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~---~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~- 281 (776)
+.|...|++.-.+.. .+.=+|.|-|++.--.+ +.+ ..---+|.. .|+.
T Consensus 284 -----lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~s--e~~-----------------~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 284 -----LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFS--EEQ-----------------KKALERYEAVLKDSGERL 339 (480)
T ss_pred -----hcccchheeeeeccchhhhhccccccccccCCChH--HHH-----------------HHHHHHHHHhhccCccee
Confidence 223444543111100 00111223333211000 000 000000100 0110
Q ss_pred ---CCeEEEEEEEcCCCc-e-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 282 ---NVKVRLGVVSAAGGP-V-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 282 ---~~~~~l~~~d~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
.....+++|+....+ . .++ .+++..+..+.||||+++|+..+ -+..|.+||..+|+.-..+.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rm---------tgHq~lVn~V~fSPd~r~IASaS----FDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRM---------TGHQALVNHVSFSPDGRYIASAS----FDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred EEecCCceEEEecccccccchhhh---------hchhhheeeEEECCCccEEEEee----cccceeeeeCCCcchhhhhh
Confidence 123779999876433 2 233 67888999999999999998877 66779999999998644333
Q ss_pred -eccCceeecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEE
Q 004067 357 -EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVY 429 (776)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~ 429 (776)
+-...|. ++|+.+. ++.....+. .|.+|+..+++..+ |..+..+|..+- |+|||+.+.
T Consensus 407 GHv~~VYq------------vawsaDsRLlVS~SkDs--TLKvw~V~tkKl~~DLpGh~DEVf~vD-wspDG~rV~ 467 (480)
T KOG0271|consen 407 GHVAAVYQ------------VAWSADSRLLVSGSKDS--TLKVWDVRTKKLKQDLPGHADEVFAVD-WSPDGQRVA 467 (480)
T ss_pred hccceeEE------------EEeccCccEEEEcCCCc--eEEEEEeeeeeecccCCCCCceEEEEE-ecCCCceee
Confidence 3222222 1454554 555445554 99999999888654 666777777765 999999644
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-16 Score=155.92 Aligned_cols=200 Identities=12% Similarity=0.019 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
...|+||++||.+++.. .|..++..|+ .+|.|+++|+||+|.+..... .++.++.+.+..++.
T Consensus 14 ~~~~~iv~lhG~~~~~~-------~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~~~---------~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLD-------NLGVLARDLV-NDHDIIQVDMRNHGLSPRDPV---------MNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCCCEEEECCCCCchh-------HHHHHHHHHh-hCCeEEEECCCCCCCCCCCCC---------CCHHHHHHHHHHHHH
Confidence 35589999999876643 2334455665 469999999999998864211 123333333333333
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCC--CCCcc-ccccc-----------cc---------ccccC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP--VTSWD-GYDTF-----------YT---------EKYMG 688 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~--~~~~~-~~~~~-----------~~---------~~~~~ 688 (776)
.. ..+++.++||||||.+++.++.++|++++++++.++ ..... ..... .. ...+.
T Consensus 77 ~l--~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (255)
T PRK10673 77 AL--QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLN 154 (255)
T ss_pred Hc--CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcC
Confidence 22 345799999999999999999999999999888643 21100 00000 00 00000
Q ss_pred C---------CC-CCc---------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEec
Q 004067 689 L---------PS-EDP---------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 749 (776)
Q Consensus 689 ~---------~~-~~~---------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 749 (776)
. .. ... ..+........+.++++|+|+++|+.|..++......+.+.+ .+.++.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~ 230 (255)
T PRK10673 155 EEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQF----PQARAHVIA 230 (255)
T ss_pred CHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhC----CCcEEEEeC
Confidence 0 00 000 000111111224566789999999999999887776666554 567899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 750 DERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 750 ~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++||.+ ..+.+..+.+.+.+||.++
T Consensus 231 ~~gH~~-~~~~p~~~~~~l~~fl~~~ 255 (255)
T PRK10673 231 GAGHWV-HAEKPDAVLRAIRRYLNDK 255 (255)
T ss_pred CCCCee-eccCHHHHHHHHHHHHhcC
Confidence 999976 6677889999999999763
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-16 Score=140.36 Aligned_cols=145 Identities=23% Similarity=0.218 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
+||++||..++.. .+..+++.|+++||.|+.+|+|+++.+.. ..++.++++.+.+...
T Consensus 1 ~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~- 58 (145)
T PF12695_consen 1 VVVLLHGWGGSRR-------DYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGYP- 58 (145)
T ss_dssp EEEEECTTTTTTH-------HHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHHC-
T ss_pred CEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhcC-
Confidence 5899999876533 23456889999999999999999887632 1245555555433222
Q ss_pred CCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEE
Q 004067 636 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLL 715 (776)
Q Consensus 636 d~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~li 715 (776)
+.++|+++|||+||.+++.++.++ ..++++|+.+|..+ ...+.+.+.|+++
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~----------------------------~~~~~~~~~pv~~ 109 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD----------------------------SEDLAKIRIPVLF 109 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG----------------------------CHHHTTTTSEEEE
T ss_pred CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc----------------------------hhhhhccCCcEEE
Confidence 778999999999999999999988 67899999887210 1234566779999
Q ss_pred EecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 716 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
++|++|..++++...++++++. .+.+++++++++|+
T Consensus 110 i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 110 IHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred EEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 9999999999999999999884 67899999999995
|
... |
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=157.91 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=136.8
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
++++....+.+.. ...|+||++||.+++.. .|...+..|++ +|.|+++|+||+|.|..... .
T Consensus 73 ~i~Y~~~G~g~~~---~~gp~lvllHG~~~~~~-------~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~-------~ 134 (360)
T PLN02679 73 SINYLVKGSPEVT---SSGPPVLLVHGFGASIP-------HWRRNIGVLAK-NYTVYAIDLLGFGASDKPPG-------F 134 (360)
T ss_pred eEEEEEecCcccC---CCCCeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEECCCCCCCCCCCCC-------c
Confidence 6777766543110 12368999999776543 34445666665 79999999999998864211 0
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCCCCcc------ccc-----c---
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWD------GYD-----T--- 680 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~~~~~------~~~-----~--- 680 (776)
.+..+++...+..+.+.. ..+++.|+||||||.+++.++.. +|++++++|++++..... ... .
T Consensus 135 ~~~~~~~a~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (360)
T PLN02679 135 SYTMETWAELILDFLEEV--VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLW 212 (360)
T ss_pred cccHHHHHHHHHHHHHHh--cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHH
Confidence 122344444443333322 34689999999999999988874 699999999887542110 000 0
Q ss_pred --------------ccc----cc----c----cCCCCC--------------C---ccchh-------cCChhhhhccCC
Q 004067 681 --------------FYT----EK----Y----MGLPSE--------------D---PVGYE-------YSSVMHHVHKMK 710 (776)
Q Consensus 681 --------------~~~----~~----~----~~~~~~--------------~---~~~~~-------~~~~~~~~~~i~ 710 (776)
.+. .. + ...+.. . ...+. ..+....+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 292 (360)
T PLN02679 213 LIDFLLKQRGIASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRIS 292 (360)
T ss_pred HHHHHhhchhhHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcC
Confidence 000 00 0 000000 0 00000 011223466788
Q ss_pred CcEEEEecCCCCccChHHH-HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 711 GKLLLVHGMIDENVHFRHT-ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+|+|+++|++|..+|+... .++++.+.+.-.+.++++++++||.+ ..+.++++.+.+.+||.+
T Consensus 293 ~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 293 LPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 9999999999999988642 23445555444678999999999986 678899999999999975
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=156.01 Aligned_cols=201 Identities=16% Similarity=0.198 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|.||++||++++.. .| +..+...+.+.||.|+++|+||+|.+....... ....++++.+.+..+.+..
T Consensus 25 ~~~vl~~hG~~g~~~---~~---~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 93 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH---EY---LENLRELLKEEGREVIMYDQLGCGYSDQPDDSD-----ELWTIDYFVDELEEVREKL 93 (288)
T ss_pred CCeEEEEcCCCCccH---HH---HHHHHHHHHhcCCEEEEEcCCCCCCCCCCCccc-----ccccHHHHHHHHHHHHHHc
Confidence 378899999766542 11 233455566669999999999999875321100 0123556666666665543
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-------ccccc-----------------------
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-------DTFYT----------------------- 683 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-------~~~~~----------------------- 683 (776)
+..++.++||||||.+++.++..+|++++++++.++......+ ...+.
T Consensus 94 --~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (288)
T TIGR01250 94 --GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQE 171 (288)
T ss_pred --CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHH
Confidence 3457999999999999999999999999999987765421100 00000
Q ss_pred --cccc----CC--CC-C---------Ccc---------------chhcCChhhhhccCCCcEEEEecCCCCccChHHHH
Q 004067 684 --EKYM----GL--PS-E---------DPV---------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 730 (776)
Q Consensus 684 --~~~~----~~--~~-~---------~~~---------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 730 (776)
..+. .. .. . ... .+...+....+.++++|+|+++|+.|.. ++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~ 250 (288)
T TIGR01250 172 AVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAR 250 (288)
T ss_pred HHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHH
Confidence 0000 00 00 0 000 0001122344567889999999999984 566666
Q ss_pred HHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 731 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 731 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.+.+.+ .+.++++++++||.. ..+.+.++.+.+.+||+
T Consensus 251 ~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 251 EMQELI----AGSRLVVFPDGSHMT-MIEDPEVYFKLLSDFIR 288 (288)
T ss_pred HHHHhc----cCCeEEEeCCCCCCc-ccCCHHHHHHHHHHHhC
Confidence 665544 456789999999987 45678899999999874
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-15 Score=143.47 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=141.3
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
-.|..+++..-.+. ..|+|+++||.|..-. .|+.....|+.+||+|+++|+||+|.|..+...
T Consensus 29 ~~gI~~h~~e~g~~-------~gP~illlHGfPe~wy-------swr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~--- 91 (322)
T KOG4178|consen 29 YKGIRLHYVEGGPG-------DGPIVLLLHGFPESWY-------SWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHI--- 91 (322)
T ss_pred EccEEEEEEeecCC-------CCCEEEEEccCCccch-------hhhhhhhhhhhcceEEEecCCCCCCCCCCCCCc---
Confidence 35666666555443 3499999999876532 455567889999999999999999988754221
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-----------cccc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-----------GYDT 680 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~-----------~~~~ 680 (776)
..+++..+...+..++..- ..+++.++||++|+++|..++..+|+++++.|..+...... ....
T Consensus 92 ---~~Yt~~~l~~di~~lld~L--g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~ 166 (322)
T KOG4178|consen 92 ---SEYTIDELVGDIVALLDHL--GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKS 166 (322)
T ss_pred ---ceeeHHHHHHHHHHHHHHh--ccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCcc
Confidence 1223444444444444432 24799999999999999999999999999999876433200 0000
Q ss_pred cc----c-----c------------------ccc---CCC--------C---CC-------------------ccchhcC
Q 004067 681 FY----T-----E------------------KYM---GLP--------S---ED-------------------PVGYEYS 700 (776)
Q Consensus 681 ~~----~-----~------------------~~~---~~~--------~---~~-------------------~~~~~~~ 700 (776)
.| . + ... ..+ | ++ ...+...
T Consensus 167 ~y~~~fQ~~~~~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~ 246 (322)
T KOG4178|consen 167 YYICLFQEPGKPETELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRN 246 (322)
T ss_pred ceeEeccccCcchhhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhC
Confidence 00 0 0 000 000 0 00 0001111
Q ss_pred C--hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 701 S--VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 701 ~--~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
. ......+++.|++++.|..|.+.+...-.+.+++... ...+.++++++||.. ..++.+++.+.+..||.+.
T Consensus 247 w~a~~~~~~~i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp--~l~~~vv~~~~gH~v-qqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 247 WEAAPWALAKITIPVLFIWGDLDPVLPYPIFGELYRKDVP--RLTERVVIEGIGHFV-QQEKPQEVNQAILGFINSF 320 (322)
T ss_pred chhccccccccccceEEEEecCcccccchhHHHHHHHhhc--cccceEEecCCcccc-cccCHHHHHHHHHHHHHhh
Confidence 1 1223456778999999999999887633344443321 234788999999987 6788999999999999875
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=164.86 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=104.0
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhh
Q 004067 530 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 609 (776)
Q Consensus 530 ~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~ 609 (776)
++.||.+|.+.++.|+.. ++.|+||++||..........+. ...+..|+++||+|+++|+||+|.|...+..
T Consensus 2 ~~~DG~~L~~~~~~P~~~----~~~P~Il~~~gyg~~~~~~~~~~---~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~- 73 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAGG----GPVPVILSRTPYGKDAGLRWGLD---KTEPAWFVAQGYAVVIQDTRGRGASEGEFDL- 73 (550)
T ss_pred cCCCCCEEEEEEEecCCC----CCCCEEEEecCCCCchhhccccc---cccHHHHHhCCcEEEEEeccccccCCCceEe-
Confidence 567999999999999753 47899999999654321000111 1135678999999999999999998754321
Q ss_pred hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
++..+.+|+.++++++.++++.+ .+|+++|+||||++++.+|..+|+.++++++.++..++
T Consensus 74 ----~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~ 134 (550)
T TIGR00976 74 ----LGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDL 134 (550)
T ss_pred ----cCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccch
Confidence 11346899999999999987655 79999999999999999999999999999998887653
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-14 Score=141.50 Aligned_cols=309 Identities=13% Similarity=0.147 Sum_probs=162.7
Q ss_pred eEEEeecCCCceEEEEe----CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCcee
Q 004067 129 RYEWVKTSSKKKIIMVP----LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQR 203 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~----~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~ 203 (776)
...|.+ ||++|+|. ...++|++|+++++++ +||.+++.......+||+++.++|+.++ +|+.+++++++.+
T Consensus 40 ~~~ft~---dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 40 QNCFTD---DGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp S--B-T---TS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred CCCcCC---CCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 457888 99999997 3467999999999999 9999775445568999999999999864 7999999999998
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEE--CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWW--SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.|..-+.. |.. .-.| ..|++.++.....+...... ... ....... ..
T Consensus 116 ~vy~~p~~---------~~g--------~gt~v~n~d~t~~~g~e~~~~d~~~l--~~~-------~~f~e~~-----~a 164 (386)
T PF14583_consen 116 VVYEVPDD---------WKG--------YGTWVANSDCTKLVGIEISREDWKPL--TKW-------KGFREFY-----EA 164 (386)
T ss_dssp EEEE--TT---------EEE--------EEEEEE-TTSSEEEEEEEEGGG-------SH-------HHHHHHH-----HC
T ss_pred EEEECCcc---------ccc--------ccceeeCCCccEEEEEEEeehhccCc--ccc-------HHHHHHH-----hh
Confidence 88776543 110 1234 56788877765432211000 000 0000000 11
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCC-eEEEEEEeecCc--eEEEEEEECCCCceEEEEEec
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN-ILTAQVLNRSQT--KLKVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~--~~~l~~~d~~~g~~~~l~~~~ 358 (776)
.....|+.+|+++|+.+.+ ......+..+.|||.. ..|.|+...... +..||.++.+++..+.+.++.
T Consensus 165 ~p~~~i~~idl~tG~~~~v---------~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~ 235 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVV---------FEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM 235 (386)
T ss_dssp ---EEEEEEETTT--EEEE---------EEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---
T ss_pred CCCceEEEEECCCCceeEE---------EecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC
Confidence 2337799999999999888 3455677889999954 577777543322 357999999998888886654
Q ss_pred cCceeecccccccCCCCccccCCeEEEEecc-CC-ceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TG-FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g-~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
..-+. ....|.+ ++..++|.+-. .+ ...|+.+++++++.+++....+ ..-.-.++||+.++--++. .
T Consensus 236 ~~e~~-gHEfw~~-------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~--~~H~~ss~Dg~L~vGDG~d-~ 304 (386)
T PF14583_consen 236 EGESV-GHEFWVP-------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW--CSHFMSSPDGKLFVGDGGD-A 304 (386)
T ss_dssp TTEEE-EEEEE-T-------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S--EEEEEE-TTSSEEEEEE----
T ss_pred CCccc-ccccccC-------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc--eeeeEEcCCCCEEEecCCC-C
Confidence 32222 2233333 44557666543 33 4578889999887777655443 2222367899865554432 1
Q ss_pred Cc------------eeeEEEEEeCCCCCCccccceeecCC----------C--CeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 437 PL------------ESHLYCAKLYPDWNHTLEAPVKLTNG----------K--GKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 437 ~~------------~~~l~~~~~~~~g~~~~~~~~~l~~~----------~--~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
|. ...||.+++.+ + ....|..+ . .-..++|||||++++|.+. ...++.|
T Consensus 305 p~~v~~~~~~~~~~~p~i~~~~~~~-~-----~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd-~~G~~~v 377 (386)
T PF14583_consen 305 PVDVADAGGYKIENDPWIYLFDVEA-G-----RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD-MEGPPAV 377 (386)
T ss_dssp ----------------EEEEEETTT-T-----EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE--TTSS-EE
T ss_pred CccccccccceecCCcEEEEecccc-C-----ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC-CCCCccE
Confidence 11 12566666631 2 11111111 0 1236799999999999964 5777999
Q ss_pred EEEEcCC
Q 004067 493 LLCSLQD 499 (776)
Q Consensus 493 ~~~~~~~ 499 (776)
|..++..
T Consensus 378 Y~v~i~~ 384 (386)
T PF14583_consen 378 YLVEIPD 384 (386)
T ss_dssp EEEE--C
T ss_pred EEEeCcc
Confidence 9988643
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-15 Score=154.06 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=137.4
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
..+...+|.++++..+.+++ .+.||++||++++... ......+...+|.|+++|+||+|.+....
T Consensus 7 ~~~~~~~~~~l~y~~~g~~~-------~~~lvllHG~~~~~~~--------~~~~~~~~~~~~~vi~~D~~G~G~S~~~~ 71 (306)
T TIGR01249 7 GYLNVSDNHQLYYEQSGNPD-------GKPVVFLHGGPGSGTD--------PGCRRFFDPETYRIVLFDQRGCGKSTPHA 71 (306)
T ss_pred CeEEcCCCcEEEEEECcCCC-------CCEEEEECCCCCCCCC--------HHHHhccCccCCEEEEECCCCCCCCCCCC
Confidence 35666678888887654221 2568999998765321 11233444578999999999999886321
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc----------
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---------- 676 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~---------- 676 (776)
. .......++.+.+..+.++. +.+++.++||||||++++.++.++|++++++|+.++.....
T Consensus 72 ~------~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 143 (306)
T TIGR01249 72 C------LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGG 143 (306)
T ss_pred C------cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcc
Confidence 1 01123556667677666553 34589999999999999999999999988888776543100
Q ss_pred ---ccccccc--------------------ccccCCCC-------------CC-------ccch------------hc--
Q 004067 677 ---GYDTFYT--------------------EKYMGLPS-------------ED-------PVGY------------EY-- 699 (776)
Q Consensus 677 ---~~~~~~~--------------------~~~~~~~~-------------~~-------~~~~------------~~-- 699 (776)
.+...+. ..+..... .. ...+ ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (306)
T TIGR01249 144 ASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLE 223 (306)
T ss_pred hhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHH
Confidence 0000000 00000000 00 0000 00
Q ss_pred ---------CC----hhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHH
Q 004067 700 ---------SS----VMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 765 (776)
Q Consensus 700 ---------~~----~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 765 (776)
.+ ....+.++ ++|+|++||..|..+|+..+..+++.+ ...++++++++||.... +...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~----~~~~~~~~~~~gH~~~~----~~~~ 295 (306)
T TIGR01249 224 NHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAF----PEAELKVTNNAGHSAFD----PNNL 295 (306)
T ss_pred HhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhC----CCCEEEEECCCCCCCCC----hHHH
Confidence 00 11234566 489999999999999999888888765 45789999999998743 3345
Q ss_pred HHHHHHHHHhC
Q 004067 766 ERIWEFIERTL 776 (776)
Q Consensus 766 ~~~~~fl~~~l 776 (776)
+.+.+|++.+|
T Consensus 296 ~~i~~~~~~~~ 306 (306)
T TIGR01249 296 AALVHALETYL 306 (306)
T ss_pred HHHHHHHHHhC
Confidence 77777777654
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=150.98 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|......|.+ .|.|+++|+||+|.|... . ....+++... +.+.
T Consensus 14 ~~ivllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~------~---~~~~~~~~~~---l~~~-- 71 (256)
T PRK10349 14 VHLVLLHGWGLNAE-------VWRCIDEELSS-HFTLHLVDLPGFGRSRGF------G---ALSLADMAEA---VLQQ-- 71 (256)
T ss_pred CeEEEECCCCCChh-------HHHHHHHHHhc-CCEEEEecCCCCCCCCCC------C---CCCHHHHHHH---HHhc--
Confidence 56999999766543 34445667765 499999999999988531 1 1234444443 3332
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc------ccc------------ccc---ccccc-----C
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD------GYD------------TFY---TEKYM-----G 688 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~------~~~------------~~~---~~~~~-----~ 688 (776)
..+++.++||||||++++.+|.++|++++++++.++..... ... ..+ ...++ .
T Consensus 72 -~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (256)
T PRK10349 72 -APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMG 150 (256)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHcc
Confidence 34689999999999999999999999999999876532210 000 000 00000 0
Q ss_pred CCC-----------------CCc-------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 689 LPS-----------------EDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 689 ~~~-----------------~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
... ... ..+...+....+.++++|+|+++|+.|.++|...+..+.+.+ .+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i----~~~~ 226 (256)
T PRK10349 151 TETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSE 226 (256)
T ss_pred CchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhC----CCCe
Confidence 000 000 001112333456788899999999999999887666555544 5679
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
++++|++||.+ ..+.++.+.+.+.+|-+
T Consensus 227 ~~~i~~~gH~~-~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 227 SYIFAKAAHAP-FISHPAEFCHLLVALKQ 254 (256)
T ss_pred EEEeCCCCCCc-cccCHHHHHHHHHHHhc
Confidence 99999999987 66889999999988854
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=152.15 Aligned_cols=212 Identities=22% Similarity=0.242 Sum_probs=139.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcc---cccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ---LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 609 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~---~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~ 609 (776)
||++|.+.+|.| .. ..++++|+||..|+..... ................|+++||+|+.+|.||.|.|+..+...
T Consensus 1 DGv~L~adv~~P-~~-~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~ 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GA-DGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM 78 (272)
T ss_dssp TS-EEEEEEEEE----TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT
T ss_pred CCCEEEEEEEec-CC-CCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC
Confidence 789999999999 21 2337999999999865321 000000001111123499999999999999999998766432
Q ss_pred hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc-c-------ccc
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y-------DTF 681 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-~-------~~~ 681 (776)
...+.+|..++|+|+.++++ ...+|+++|.|++|+.++.+|+..|..++|++...+..++.. . ...
T Consensus 79 -----~~~e~~D~~d~I~W~~~Qpw-s~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 79 -----SPNEAQDGYDTIEWIAAQPW-SNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp -----SHHHHHHHHHHHHHHHHCTT-EEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred -----ChhHHHHHHHHHHHHHhCCC-CCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 33468999999999999976 557999999999999999999988888999999887766432 0 000
Q ss_pred cc-cc---------ccCC-------------------------------------CCCCccchhcCChhhhhccCCCcEE
Q 004067 682 YT-EK---------YMGL-------------------------------------PSEDPVGYEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 682 ~~-~~---------~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~i~~P~l 714 (776)
+. .+ .... .......|...++...+.++++|+|
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l 232 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVL 232 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEE
Confidence 00 00 0000 0011233445555566789999999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCC-CCeEEEEecCCCCC
Q 004067 715 LVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM 754 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~ 754 (776)
++.|..|.... ..+.+.++++++.+ .+.++++-|. +|.
T Consensus 233 ~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 233 IVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred EecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999997777 78899999998877 5677877765 774
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-15 Score=141.95 Aligned_cols=221 Identities=16% Similarity=0.207 Sum_probs=139.7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
+++..+...-..+.+ ...+.+|++||.+.+.. .|... ...|++ ...|+++|++|+|.|.++-.....
T Consensus 73 ~~~~~iw~~~~~~~~-----~~~~plVliHGyGAg~g---~f~~N----f~~La~-~~~vyaiDllG~G~SSRP~F~~d~ 139 (365)
T KOG4409|consen 73 PNGIEIWTITVSNES-----ANKTPLVLIHGYGAGLG---LFFRN----FDDLAK-IRNVYAIDLLGFGRSSRPKFSIDP 139 (365)
T ss_pred CCCceeEEEeecccc-----cCCCcEEEEeccchhHH---HHHHh----hhhhhh-cCceEEecccCCCCCCCCCCCCCc
Confidence 344444444444433 34567788999655433 23222 334555 899999999999999875332111
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--cc--------cc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YD--------TF 681 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~--~~--------~~ 681 (776)
. .....+++.|+..+... ...++.|+|||+||++|..+|.+||+++.-+++++|..-... +. .+
T Consensus 140 ~----~~e~~fvesiE~WR~~~--~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w 213 (365)
T KOG4409|consen 140 T----TAEKEFVESIEQWRKKM--GLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEW 213 (365)
T ss_pred c----cchHHHHHHHHHHHHHc--CCcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHH
Confidence 1 12335666666666554 345999999999999999999999999999999988632110 00 00
Q ss_pred ----------------------cc---------ccccCCCC---C-------------------------CccchhcCCh
Q 004067 682 ----------------------YT---------EKYMGLPS---E-------------------------DPVGYEYSSV 702 (776)
Q Consensus 682 ----------------------~~---------~~~~~~~~---~-------------------------~~~~~~~~~~ 702 (776)
+. ..+...+. + ..-.+.+...
T Consensus 214 ~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm 293 (365)
T KOG4409|consen 214 YKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPM 293 (365)
T ss_pred HhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhH
Confidence 00 00000110 0 0011222233
Q ss_pred hhhhccCC--CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 703 MHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 703 ~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++.+..++ +|+++|+|+.|..- .....++...+ ....++.+++|++||.. ..++++.+.+.+..++++.
T Consensus 294 ~~r~~~l~~~~pv~fiyG~~dWmD-~~~g~~~~~~~--~~~~~~~~~v~~aGHhv-ylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 294 IQRLRELKKDVPVTFIYGDRDWMD-KNAGLEVTKSL--MKEYVEIIIVPGAGHHV-YLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred HHHHHhhccCCCEEEEecCccccc-chhHHHHHHHh--hcccceEEEecCCCcee-ecCCHHHHHHHHHHHHhcc
Confidence 44455555 89999999999754 44555665554 34568999999999987 6788999999999988763
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=157.40 Aligned_cols=249 Identities=16% Similarity=0.149 Sum_probs=156.9
Q ss_pred hhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccc--cchhhhHHHHhCCcEEEE
Q 004067 516 IKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDMRAQYLRSKGILVWK 593 (776)
Q Consensus 516 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~--~~~~~~~~l~~~G~~v~~ 593 (776)
+.... -+.|+..+++.||..|....+.+.....+..+.|+|+++||...+.. .|.. ....++..|+++||.|++
T Consensus 37 i~~~g-y~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~---~w~~~~~~~sla~~La~~GydV~l 112 (395)
T PLN02872 37 IHPAG-YSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGD---AWFLNSPEQSLGFILADHGFDVWV 112 (395)
T ss_pred HHHcC-CCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCccccccc---ceeecCcccchHHHHHhCCCCccc
Confidence 33443 47889999999999888887754332112234588999999765443 2311 112345678899999999
Q ss_pred ECCCCCCCC-chhhhhhhh-----hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC---ceE
Q 004067 594 LDNRGTARR-GLKFEASIK-----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQ 664 (776)
Q Consensus 594 ~d~rg~g~~-~~~~~~~~~-----~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~---~~~ 664 (776)
+|.||++.+ +........ ..+......|+.++++++.+.. .+++.++||||||.+++.++ .+|+ .++
T Consensus 113 ~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~ 188 (395)
T PLN02872 113 GNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVE 188 (395)
T ss_pred ccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHH
Confidence 999998754 211111000 0111112469999999998653 36899999999999998555 4665 456
Q ss_pred EEEEcCCCCCccccc----------------------cc-------------ccc----------cccCC----------
Q 004067 665 CAVSGAPVTSWDGYD----------------------TF-------------YTE----------KYMGL---------- 689 (776)
Q Consensus 665 ~~v~~~~~~~~~~~~----------------------~~-------------~~~----------~~~~~---------- 689 (776)
++++.+|+..+.... .+ +.. .+.+.
T Consensus 189 ~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~ 268 (395)
T PLN02872 189 AAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRID 268 (395)
T ss_pred HHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhh
Confidence 666666653210000 00 000 00000
Q ss_pred ------CC---------------------------CCccchhc-CChhhhhccC--CCcEEEEecCCCCccChHHHHHHH
Q 004067 690 ------PS---------------------------EDPVGYEY-SSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLI 733 (776)
Q Consensus 690 ------~~---------------------------~~~~~~~~-~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~ 733 (776)
|. .+...|.. ..|...+.++ +.|+++++|++|..+++..+.++.
T Consensus 269 ~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~ 348 (395)
T PLN02872 269 YYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTL 348 (395)
T ss_pred HHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHH
Confidence 00 01111111 1233456777 479999999999999999888888
Q ss_pred HHHHHCCCCeEEEEecCCCCC--CCCCCcHHHHHHHHHHHHHHh
Q 004067 734 NALVAARKPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+.+. ...+++.+++.+|. +...+.++.+++.+.+||+++
T Consensus 349 ~~Lp---~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 349 AELP---SKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred HHCC---CccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 8773 23578889999996 345677889999999999875
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-15 Score=141.98 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=150.4
Q ss_pred CceEEEEEcCCCcEE-EEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQANDGTVL-YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l-~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
......+..+||..+ ..|.-.|.. .+.|.||++||..|+.. ....+.+...+.++||.|++++.|||++
T Consensus 48 ~~~re~v~~pdg~~~~ldw~~~p~~-----~~~P~vVl~HGL~G~s~-----s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~ 117 (345)
T COG0429 48 AYTRERLETPDGGFIDLDWSEDPRA-----AKKPLVVLFHGLEGSSN-----SPYARGLMRALSRRGWLVVVFHFRGCSG 117 (345)
T ss_pred ccceEEEEcCCCCEEEEeeccCccc-----cCCceEEEEeccCCCCc-----CHHHHHHHHHHHhcCCeEEEEecccccC
Confidence 344556777777544 445444444 46699999999655543 1233455777889999999999999987
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHH-HHHHHHHhhCCC-ceEEEEE-cCCCCCc---
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG-YLSAITLARFPD-VFQCAVS-GAPVTSW--- 675 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG-~~a~~~a~~~~~-~~~~~v~-~~~~~~~--- 675 (776)
+... ...-+.....+|+..++++++++. ...++.++|.|+|| +++.+++.+-.+ .+.|++. .+|+ ++
T Consensus 118 ~~n~----~p~~yh~G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~-Dl~~~ 190 (345)
T COG0429 118 EANT----SPRLYHSGETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPF-DLEAC 190 (345)
T ss_pred Cccc----CcceecccchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHH-HHHHH
Confidence 7532 112222334799999999999875 35799999999999 666666654322 2344444 4443 21
Q ss_pred ----------cccccc---------------c-------------------------cccccCCCCCCccchhcCChhhh
Q 004067 676 ----------DGYDTF---------------Y-------------------------TEKYMGLPSEDPVGYEYSSVMHH 705 (776)
Q Consensus 676 ----------~~~~~~---------------~-------------------------~~~~~~~~~~~~~~~~~~~~~~~ 705 (776)
+.|... + .....|.+ +..+.|...|.+..
T Consensus 191 ~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~-da~dYYr~aSs~~~ 269 (345)
T COG0429 191 AYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFA-DAEDYYRQASSLPL 269 (345)
T ss_pred HHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCC-cHHHHHHhcccccc
Confidence 000000 0 00001111 12356778888999
Q ss_pred hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC--C-CC-CcHHHHHHHHHHHHHHh
Q 004067 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--R-RH-RDRIYMEERIWEFIERT 775 (776)
Q Consensus 706 ~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~-~~-~~~~~~~~~~~~fl~~~ 775 (776)
+++|+.|+||||+.+|++++++..-..... .+..+.+.+.+.+||.- . .. .......+++.+||+..
T Consensus 270 L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred ccccccceEEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHH
Confidence 999999999999999999987644443332 46789999999999963 1 11 11235678888998765
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-15 Score=155.49 Aligned_cols=230 Identities=14% Similarity=0.157 Sum_probs=136.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHH-------HhCCcEEEEECCCCCCCCch
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-------RSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l-------~~~G~~v~~~d~rg~g~~~~ 604 (776)
.+|..+++..+.+.......+..|.||++||++++.. .|.. ..+...+ ...+|.|+++|+||+|.|..
T Consensus 47 ~~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~---~~~~--~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~ 121 (360)
T PRK06489 47 LPELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGK---SFLS--PTFAGELFGPGQPLDASKYFIILPDGIGHGKSSK 121 (360)
T ss_pred cCCceEEEEecCCCCcccccCCCCeEEEeCCCCCchh---hhcc--chhHHHhcCCCCcccccCCEEEEeCCCCCCCCCC
Confidence 3566677666543110000011478999999876543 2210 0112222 25689999999999998853
Q ss_pred hhhhhhhhccCCccHHHHHHHHHH-HHHcCCCCCCcEE-EEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc-------
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEW-LIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW------- 675 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~-l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~------- 675 (776)
.... .......+.++++.+.+.. +.++. +.+++. |+||||||++++.++.++|++++++|+.++....
T Consensus 122 p~~~-~~~~~~~~~~~~~a~~~~~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~ 198 (360)
T PRK06489 122 PSDG-LRAAFPRYDYDDMVEAQYRLVTEGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWM 198 (360)
T ss_pred CCcC-CCCCCCcccHHHHHHHHHHHHHHhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHH
Confidence 2110 0001112345666654433 43433 334664 8999999999999999999999999987654210
Q ss_pred -ccc-cc-----------cccc----------cc-----------c-CCCC-C----------------Cccch------
Q 004067 676 -DGY-DT-----------FYTE----------KY-----------M-GLPS-E----------------DPVGY------ 697 (776)
Q Consensus 676 -~~~-~~-----------~~~~----------~~-----------~-~~~~-~----------------~~~~~------ 697 (776)
... .. .+.. .+ . ..+. . ....+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (360)
T PRK06489 199 WRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDS 278 (360)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Confidence 000 00 0000 00 0 0000 0 00000
Q ss_pred -hcCChhhhhccCCCcEEEEecCCCCccChHHH--HHHHHHHHHCCCCeEEEEecCC----CCCCCCCCcHHHHHHHHHH
Q 004067 698 -EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT--ARLINALVAARKPYEILIFPDE----RHMPRRHRDRIYMEERIWE 770 (776)
Q Consensus 698 -~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~--~~~~~~l~~~~~~~~~~~~~~~----~H~~~~~~~~~~~~~~~~~ 770 (776)
...+....+.+|++|+|+++|++|..+|+..+ +.+.+.+ .+.+++++|++ ||.+ . +.++.+.+.+.+
T Consensus 279 ~~~~d~~~~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~i----p~a~l~~i~~a~~~~GH~~-~-e~P~~~~~~i~~ 352 (360)
T PRK06489 279 SRDYNPSPDLEKIKAPVLAINSADDERNPPETGVMEAALKRV----KHGRLVLIPASPETRGHGT-T-GSAKFWKAYLAE 352 (360)
T ss_pred hhccChHHHHHhCCCCEEEEecCCCcccChhhHHHHHHHHhC----cCCeEEEECCCCCCCCccc-c-cCHHHHHHHHHH
Confidence 01122334678899999999999999998765 4555544 56789999996 9987 4 589999999999
Q ss_pred HHHHh
Q 004067 771 FIERT 775 (776)
Q Consensus 771 fl~~~ 775 (776)
||+++
T Consensus 353 FL~~~ 357 (360)
T PRK06489 353 FLAQV 357 (360)
T ss_pred HHHhc
Confidence 99764
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-15 Score=142.73 Aligned_cols=189 Identities=16% Similarity=0.085 Sum_probs=111.1
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhH-HHHhCCcEEEEECCCC------CCCCchhhhhhhhhcc-CCccHHHH-
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRSKGILVWKLDNRG------TARRGLKFEASIKHNC-GRIDAEDQ- 622 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~-~l~~~G~~v~~~d~rg------~g~~~~~~~~~~~~~~-~~~~~~D~- 622 (776)
++.|+||++||.+.+.. . +..... .+......++++.-+. .|.....|........ ...+.+++
T Consensus 12 ~~~~lvi~LHG~G~~~~---~----~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~ 84 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSED---L----FALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIE 84 (216)
T ss_dssp T-SEEEEEE--TTS-HH---H----HHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHH
T ss_pred CCceEEEEECCCCCCcc---h----hHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHH
Confidence 57799999999755532 1 111122 1223567788876542 1110012211100000 00112222
Q ss_pred ------HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccc
Q 004067 623 ------LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 696 (776)
Q Consensus 623 ------~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (776)
.+.++...+ ..++.+||++.|+|+||.+|+.++.++|..+.+++++++....... .
T Consensus 85 ~s~~~l~~li~~~~~-~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------~--- 146 (216)
T PF02230_consen 85 ESAERLDELIDEEVA-YGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------L--- 146 (216)
T ss_dssp HHHHHHHHHHHHHHH-TT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC--------------C---
T ss_pred HHHHHHHHHHHHHHH-cCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc--------------c---
Confidence 333333333 3489999999999999999999999999999999999886432100 0
Q ss_pred hhcCChhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 697 YEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 697 ~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
....... +.|++++||..|+++|...++...+.|++.+.++++..|++.||.+ ..+.+..+.+||+++
T Consensus 147 ------~~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i-----~~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 147 ------EDRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEI-----SPEELRDLREFLEKH 215 (216)
T ss_dssp ------HCCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH
T ss_pred ------cccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----CHHHHHHHHHHHhhh
Confidence 0001111 5799999999999999999999999999999999999999999987 346678899999987
Q ss_pred C
Q 004067 776 L 776 (776)
Q Consensus 776 l 776 (776)
+
T Consensus 216 ~ 216 (216)
T PF02230_consen 216 I 216 (216)
T ss_dssp -
T ss_pred C
Confidence 5
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-16 Score=152.78 Aligned_cols=221 Identities=18% Similarity=0.235 Sum_probs=118.3
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccc-----------ccccccccchhhhHHHHhCCcEE
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQL-----------VCDSWINTVDMRAQYLRSKGILV 591 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~-----------~~~~~~~~~~~~~~~l~~~G~~v 591 (776)
..|.+.|.+.++..+++++..|++.. ++.|+||++||..+... +.+.+.......+..|+++||+|
T Consensus 87 ~~EKv~f~~~p~~~vpaylLvPd~~~---~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVv 163 (390)
T PF12715_consen 87 TREKVEFNTTPGSRVPAYLLVPDGAK---GPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVV 163 (390)
T ss_dssp EEEEEEE--STTB-EEEEEEEETT-----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEE
T ss_pred EEEEEEEEccCCeeEEEEEEecCCCC---CCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEE
Confidence 57788898889999999999999852 68999999999443321 11112222223578899999999
Q ss_pred EEECCCCCCCCchhhh---------hhh---h----hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHH
Q 004067 592 WKLDNRGTARRGLKFE---------ASI---K----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 655 (776)
Q Consensus 592 ~~~d~rg~g~~~~~~~---------~~~---~----~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 655 (776)
+++|.+|+|+.+..-. ... . .++......|...+++||.+++.||++||+++|+||||+.++++
T Consensus 164 la~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~L 243 (390)
T PF12715_consen 164 LAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWL 243 (390)
T ss_dssp EEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHH
T ss_pred EEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHH
Confidence 9999999987643110 000 1 11112345577889999999999999999999999999999999
Q ss_pred HhhCCCceEEEEEcCCCCCcccccccc----cccccCCCCC----CccchhcCChhhhhccC-CCcEEEEecCCCCccCh
Q 004067 656 LARFPDVFQCAVSGAPVTSWDGYDTFY----TEKYMGLPSE----DPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHF 726 (776)
Q Consensus 656 a~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~ 726 (776)
++..+ ++++.|+.+-+..+..-.... .+...+.+.. -+..+...+--+.++-+ ..|+|++.|..|..+|.
T Consensus 244 aALDd-RIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIasliAPRPll~~nG~~Dklf~i 322 (390)
T PF12715_consen 244 AALDD-RIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIASLIAPRPLLFENGGKDKLFPI 322 (390)
T ss_dssp HHH-T-T--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHHTTTTS-EEESS-B-HHHHHH
T ss_pred HHcch-hhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHHHhCCCcchhhcCCcccccHH
Confidence 99854 567777654432221100000 0000000100 01112222222223333 26999999999988754
Q ss_pred HHHHHHHHHHHHCCCCeEEEEecC
Q 004067 727 RHTARLINALVAARKPYEILIFPD 750 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~~ 750 (776)
.+..++.. ....+++++.||+
T Consensus 323 --V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 323 --VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp --HHHHHHHT-T-GGGEEE---GG
T ss_pred --HHHHHHhc-CCCcceEEeeccc
Confidence 44444443 2345789988886
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-15 Score=155.89 Aligned_cols=229 Identities=10% Similarity=0.058 Sum_probs=137.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh-
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK- 611 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~- 611 (776)
+|.++++..+.+... .+.|+||++||++++.. .|.... .....|...+|.|+++|+||+|.|.........
T Consensus 24 ~~~~l~y~~~G~~~~----~~~~~vll~~~~~~~~~---~~~~~~-~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~ 95 (339)
T PRK07581 24 PDARLAYKTYGTLNA----AKDNAILYPTWYSGTHQ---DNEWLI-GPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPF 95 (339)
T ss_pred CCceEEEEecCccCC----CCCCEEEEeCCCCCCcc---cchhhc-cCCCccCcCceEEEEecCCCCCCCCCCCCCCCCC
Confidence 456677666654221 23477888887655432 121000 001245567899999999999988643211000
Q ss_pred --hccCCccH-HHHHHHHHHHHHcCCCCCCcE-EEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-----------
Q 004067 612 --HNCGRIDA-EDQLTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD----------- 676 (776)
Q Consensus 612 --~~~~~~~~-~D~~~~i~~l~~~~~id~~~i-~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~----------- 676 (776)
..+....+ +|+.+....+.+.- ..+++ .|+||||||++|+.+|.++|++++++|+.++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~l--gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~ 173 (339)
T PRK07581 96 NAARFPHVTIYDNVRAQHRLLTEKF--GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLK 173 (339)
T ss_pred CCCCCCceeHHHHHHHHHHHHHHHh--CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHH
Confidence 11111123 34444344454433 33584 789999999999999999999999988875432100
Q ss_pred -------ccc----------------c-c----ccccccCC------CC-----------------CCccc-------hh
Q 004067 677 -------GYD----------------T-F----YTEKYMGL------PS-----------------EDPVG-------YE 698 (776)
Q Consensus 677 -------~~~----------------~-~----~~~~~~~~------~~-----------------~~~~~-------~~ 698 (776)
.+. . . +...++.. .. ..... +.
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (339)
T PRK07581 174 AALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQ 253 (339)
T ss_pred HHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhh
Confidence 000 0 0 00000000 00 00000 00
Q ss_pred ------c----CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecC-CCCCCCCCCcHHHHHHH
Q 004067 699 ------Y----SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD-ERHMPRRHRDRIYMEER 767 (776)
Q Consensus 699 ------~----~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~ 767 (776)
. .+....+.++++|+|+++|++|..+|+..+..+.+.+ .+.+++++++ +||.. +.+....+...
T Consensus 254 ~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~i----p~a~l~~i~~~~GH~~-~~~~~~~~~~~ 328 (339)
T PRK07581 254 RGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFPPEDCEAEAALI----PNAELRPIESIWGHLA-GFGQNPADIAF 328 (339)
T ss_pred hcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCeEEEeCCCCCccc-cccCcHHHHHH
Confidence 0 0223346678899999999999999998887776655 4568999998 89976 66778889999
Q ss_pred HHHHHHHhC
Q 004067 768 IWEFIERTL 776 (776)
Q Consensus 768 ~~~fl~~~l 776 (776)
+.+||++.|
T Consensus 329 ~~~~~~~~~ 337 (339)
T PRK07581 329 IDAALKELL 337 (339)
T ss_pred HHHHHHHHH
Confidence 999999864
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=127.85 Aligned_cols=202 Identities=20% Similarity=0.296 Sum_probs=142.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
...+.++-+.|. +.+..-.++. +..|+.|++|-.|.....++ ..-...++..|.++||+|+-+|+||.|.|.
T Consensus 4 ~~~v~i~Gp~G~-le~~~~~~~~-----~~~~iAli~HPHPl~gGtm~--nkvv~~la~~l~~~G~atlRfNfRgVG~S~ 75 (210)
T COG2945 4 MPTVIINGPAGR-LEGRYEPAKT-----PAAPIALICHPHPLFGGTMN--NKVVQTLARALVKRGFATLRFNFRGVGRSQ 75 (210)
T ss_pred CCcEEecCCccc-ceeccCCCCC-----CCCceEEecCCCccccCccC--CHHHHHHHHHHHhCCceEEeeccccccccc
Confidence 345566655554 5555443332 46788899987554332211 122344577788999999999999999987
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccc
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 683 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (776)
..|- .|..+.+|..++++|+.++.. +...+.+.|+|+|+++++.++.+.|+. ...+...|..+. ++
T Consensus 76 G~fD------~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~--~d---- 141 (210)
T COG2945 76 GEFD------NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINA--YD---- 141 (210)
T ss_pred Cccc------CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCc--hh----
Confidence 6553 355679999999999999753 444568999999999999999998764 444554444330 00
Q ss_pred ccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHH
Q 004067 684 EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIY 763 (776)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 763 (776)
...+.....|.++++|+.|+++.+.......+ +.+..++++++++|.|. .+...
T Consensus 142 -------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~-----~~~~~~i~i~~a~HFF~--gKl~~ 195 (210)
T COG2945 142 -------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQE-----SIKITVITIPGADHFFH--GKLIE 195 (210)
T ss_pred -------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhc-----CCCCceEEecCCCceec--ccHHH
Confidence 12234456799999999999888776666655 36778999999999773 46778
Q ss_pred HHHHHHHHHH
Q 004067 764 MEERIWEFIE 773 (776)
Q Consensus 764 ~~~~~~~fl~ 773 (776)
+.+.+.+|+.
T Consensus 196 l~~~i~~~l~ 205 (210)
T COG2945 196 LRDTIADFLE 205 (210)
T ss_pred HHHHHHHHhh
Confidence 8888888884
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=154.11 Aligned_cols=205 Identities=19% Similarity=0.157 Sum_probs=126.6
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHH-HHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAE-DQLTGAEWLIK 631 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~-D~~~~i~~l~~ 631 (776)
..|+||++||.+++.. .|...+..|++ +|.|+++|+||+|.+.+.... ... ..... .+.+.+..+++
T Consensus 104 ~~p~vvllHG~~~~~~-------~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~--~~~--~~~~~~~~~~~i~~~~~ 171 (402)
T PLN02894 104 DAPTLVMVHGYGASQG-------FFFRNFDALAS-RFRVIAIDQLGWGGSSRPDFT--CKS--TEETEAWFIDSFEEWRK 171 (402)
T ss_pred CCCEEEEECCCCcchh-------HHHHHHHHHHh-CCEEEEECCCCCCCCCCCCcc--ccc--HHHHHHHHHHHHHHHHH
Confidence 4589999999766532 12233556655 599999999999988643110 000 00111 22333333333
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc----------c---------c-----------
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------T---------F----------- 681 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~----------~---------~----------- 681 (776)
.. +..++.++||||||++++.++.++|+.++++|+.+|..-..... . .
T Consensus 172 ~l--~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 249 (402)
T PLN02894 172 AK--NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKII 249 (402)
T ss_pred Hc--CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHH
Confidence 22 44689999999999999999999999999998887643110000 0 0
Q ss_pred -------------cc-cccc----C--CCCCCccc---------------------------hhcCChhhhhccCCCcEE
Q 004067 682 -------------YT-EKYM----G--LPSEDPVG---------------------------YEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 682 -------------~~-~~~~----~--~~~~~~~~---------------------------~~~~~~~~~~~~i~~P~l 714 (776)
+. .++. + ........ +...+....+.++++|++
T Consensus 250 ~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~l 329 (402)
T PLN02894 250 RGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTT 329 (402)
T ss_pred HhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEE
Confidence 00 0000 0 00000000 001122234677889999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+++|++|.+++ .....+.+.+ +..+++++++++||.. ..++++.+.+.+.+|++.+|
T Consensus 330 iI~G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~ 386 (402)
T PLN02894 330 FIYGRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYL 386 (402)
T ss_pred EEEeCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhc
Confidence 99999998664 4454544433 4457899999999976 67788999999999988764
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-15 Score=147.24 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHH-HHHHHHcC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQG 633 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~ 633 (776)
|+||++||.+++.. .|..++..|+ .||.|+++|+||+|.+..... ......+++... +..+.+..
T Consensus 2 ~~vv~~hG~~~~~~-------~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~------~~~~~~~~~~~~~~~~~~~~~ 67 (251)
T TIGR03695 2 PVLVFLHGFLGSGA-------DWQALIELLG-PHFRCLAIDLPGHGSSQSPDE------IERYDFEEAAQDILATLLDQL 67 (251)
T ss_pred CEEEEEcCCCCchh-------hHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCc------cChhhHHHHHHHHHHHHHHHc
Confidence 68999999766543 3445577777 799999999999998854211 111234555554 55554442
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-------------cc--------cccccc-----
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-------------TF--------YTEKYM----- 687 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-------------~~--------~~~~~~----- 687 (776)
+.+++.++||||||.+++.++.++|+.++++++.++...+.... .. +...+.
T Consensus 68 --~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (251)
T TIGR03695 68 --GIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLF 145 (251)
T ss_pred --CCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCcee
Confidence 45689999999999999999999999999999887654321100 00 000000
Q ss_pred C----CCCCCc----------------cch------hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 688 G----LPSEDP----------------VGY------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 688 ~----~~~~~~----------------~~~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
. .+.... ..+ ...+....+.++++|+|+++|++|..++ .. .+.+.+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~ 220 (251)
T TIGR03695 146 ASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLP 220 (251)
T ss_pred eecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCC
Confidence 0 000000 000 0112223456788999999999997653 22 233444456
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+.+++++|++||.+ ..+..+.+...+.+||+
T Consensus 221 ~~~~~~~~~~gH~~-~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 221 NLTLVIIANAGHNI-HLENPEAFAKILLAFLE 251 (251)
T ss_pred CCcEEEEcCCCCCc-CccChHHHHHHHHHHhC
Confidence 78999999999987 55677888888888873
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=150.21 Aligned_cols=227 Identities=19% Similarity=0.254 Sum_probs=138.8
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+++.|+.. |.+|++++..|+.. ++.|+||++-|.-+.+. . .+..+.++++.+|++++++|+||.|.
T Consensus 163 ~~i~~v~iP~e-g~~I~g~LhlP~~~----~p~P~VIv~gGlDs~qe---D---~~~l~~~~l~~rGiA~LtvDmPG~G~ 231 (411)
T PF06500_consen 163 YPIEEVEIPFE-GKTIPGYLHLPSGE----KPYPTVIVCGGLDSLQE---D---LYRLFRDYLAPRGIAMLTVDMPGQGE 231 (411)
T ss_dssp SEEEEEEEEET-TCEEEEEEEESSSS----S-EEEEEEE--TTS-GG---G---GHHHHHCCCHHCT-EEEEE--TTSGG
T ss_pred CCcEEEEEeeC-CcEEEEEEEcCCCC----CCCCEEEEeCCcchhHH---H---HHHHHHHHHHhCCCEEEEEccCCCcc
Confidence 35788888884 58899999999853 68899888766433222 1 12223456889999999999999997
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc----
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---- 677 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---- 677 (776)
+...... .+. ..-..+++++|.+.++||..||+++|.|+||++|..+|..++++++++|+..|+..-..
T Consensus 232 s~~~~l~---~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~ 304 (411)
T PF06500_consen 232 SPKWPLT---QDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPE 304 (411)
T ss_dssp GTTT-S----S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HH
T ss_pred cccCCCC---cCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHH
Confidence 6432111 111 12356789999999999999999999999999999999888888999988877643211
Q ss_pred ----ccccc----cccccCCCCCCc----cchhcCChhh--hh--ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 678 ----YDTFY----TEKYMGLPSEDP----VGYEYSSVMH--HV--HKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 678 ----~~~~~----~~~~~~~~~~~~----~~~~~~~~~~--~~--~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
+...| ..+ +|....+. ......+... .+ .+..+|+|.+.+++|.++|.+....++. .+.
T Consensus 305 ~~~~~P~my~d~LA~r-lG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~ 379 (411)
T PF06500_consen 305 WQQRVPDMYLDVLASR-LGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SST 379 (411)
T ss_dssp HHTTS-HHHHHHHHHH-CT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBT
T ss_pred HHhcCCHHHHHHHHHH-hCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCC
Confidence 11111 111 12211111 1122333322 23 5566899999999999999887766655 245
Q ss_pred CeEEEEecCCC-CCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 742 PYEILIFPDER-HMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 742 ~~~~~~~~~~~-H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+-+...++... |. .....+..+.+||++.|
T Consensus 380 ~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 380 DGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp T-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 55667776533 42 34577899999998764
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-15 Score=153.70 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|......|++ +|.|+++|+||+|.|........... ..+|+.+.++.+
T Consensus 87 ~~vvliHG~~~~~~-------~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~~~~~~~----~a~~l~~~i~~~----- 149 (354)
T PLN02578 87 LPIVLIHGFGASAF-------HWRYNIPELAK-KYKVYALDLLGFGWSDKALIEYDAMV----WRDQVADFVKEV----- 149 (354)
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEECCCCCCCCCCcccccCHHH----HHHHHHHHHHHh-----
Confidence 56789999766532 23344556654 69999999999998875421100000 123444444433
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc---------------cc--------cccc-------
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---------------DT--------FYTE------- 684 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---------------~~--------~~~~------- 684 (776)
..+++.++||||||++++.+|.++|+++++++++++...+... .. .+..
T Consensus 150 -~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (354)
T PLN02578 150 -VKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLF 228 (354)
T ss_pred -ccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHH
Confidence 2358999999999999999999999999999987654321100 00 0000
Q ss_pred ----------c----ccCCCC--------------CCc---cc-h----------hcCChhhhhccCCCcEEEEecCCCC
Q 004067 685 ----------K----YMGLPS--------------EDP---VG-Y----------EYSSVMHHVHKMKGKLLLVHGMIDE 722 (776)
Q Consensus 685 ----------~----~~~~~~--------------~~~---~~-~----------~~~~~~~~~~~i~~P~lii~G~~D~ 722 (776)
. ....+. .+. .. + ...+....+.++++|+|+++|++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~ 308 (354)
T PLN02578 229 WQAKQPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDP 308 (354)
T ss_pred HHhcCHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCC
Confidence 0 000000 000 00 0 0111223467789999999999999
Q ss_pred ccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 723 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 723 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.++...+.++.+.+ .+.+++++ ++||.+ ..+.++++.+.+.+|+.
T Consensus 309 ~v~~~~~~~l~~~~----p~a~l~~i-~~GH~~-~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 309 WVGPAKAEKIKAFY----PDTTLVNL-QAGHCP-HDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCHHHHHHHHHhC----CCCEEEEe-CCCCCc-cccCHHHHHHHHHHHHh
Confidence 99988887776654 45677788 589987 67889999999999985
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-15 Score=147.73 Aligned_cols=190 Identities=17% Similarity=0.199 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|..++..|. .+|.|+++|+||+|.+... ...+.+++.+ .+.+..
T Consensus 5 ~~iv~~HG~~~~~~-------~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~~---~~~~~~- 63 (245)
T TIGR01738 5 VHLVLIHGWGMNAE-------VFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAAE---AIAAQA- 63 (245)
T ss_pred ceEEEEcCCCCchh-------hHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHHH---HHHHhC-
Confidence 78999999766543 2344456665 4699999999999987531 1122444443 333332
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---cc------------cccc-------ccc-----c
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---YD------------TFYT-------EKY-----M 687 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---~~------------~~~~-------~~~-----~ 687 (776)
.+++.++||||||++++.++.++|++++++|+.++...+.. +. ..+. ..+ .
T Consensus 64 --~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (245)
T TIGR01738 64 --PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTL 141 (245)
T ss_pred --CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 25899999999999999999999999999988765432110 00 0000 000 0
Q ss_pred CCCCCCc------------------------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCe
Q 004067 688 GLPSEDP------------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 743 (776)
Q Consensus 688 ~~~~~~~------------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 743 (776)
+...... ..+...+....+.++++|+|+++|++|..+++.....+.+.+ .++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~----~~~ 217 (245)
T TIGR01738 142 GTPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLA----PHS 217 (245)
T ss_pred cCCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhC----CCC
Confidence 1000000 000111223346788999999999999999988777776654 467
Q ss_pred EEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 744 EILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 744 ~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
++++++++||.+ ..+.+.++.+.+.+|+
T Consensus 218 ~~~~~~~~gH~~-~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 218 ELYIFAKAAHAP-FLSHAEAFCALLVAFK 245 (245)
T ss_pred eEEEeCCCCCCc-cccCHHHHHHHHHhhC
Confidence 899999999987 5577888888888875
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-15 Score=156.47 Aligned_cols=195 Identities=17% Similarity=0.152 Sum_probs=128.9
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|.||++||.+++.. .|......|.. +|.|+++|+||+|.+.... ......++.+.+..+.+..
T Consensus 131 ~~~vl~~HG~~~~~~-------~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~~--------~~~~~~~~~~~~~~~~~~~ 194 (371)
T PRK14875 131 GTPVVLIHGFGGDLN-------NWLFNHAALAA-GRPVIALDLPGHGASSKAV--------GAGSLDELAAAVLAFLDAL 194 (371)
T ss_pred CCeEEEECCCCCccc-------hHHHHHHHHhc-CCEEEEEcCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHhc
Confidence 478999999766543 33444556655 5999999999999875321 1123566666666666543
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccc----------------ccccCCCCCC----
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT----------------EKYMGLPSED---- 693 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------~~~~~~~~~~---- 693 (776)
+..++.++|||+||++++.++.++|+++.++++.+|..........+. ......+...
T Consensus 195 --~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (371)
T PRK14875 195 --GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQM 272 (371)
T ss_pred --CCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHH
Confidence 556899999999999999999999999999998876532110000000 0000000000
Q ss_pred -------------cc------------chhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEe
Q 004067 694 -------------PV------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 748 (776)
Q Consensus 694 -------------~~------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 748 (776)
.. .....+....+.++++|+|+++|++|..+|+..+..+. ..+++.++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~ 345 (371)
T PRK14875 273 VEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVL 345 (371)
T ss_pred HHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEe
Confidence 00 00011222346678899999999999999987654432 35688999
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 749 PDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 749 ~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++||.+ ..+..+.+.+.+.+||++
T Consensus 346 ~~~gH~~-~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 346 PGAGHMP-QMEAAADVNRLLAEFLGK 370 (371)
T ss_pred CCCCCCh-hhhCHHHHHHHHHHHhcc
Confidence 9999976 556788899999999875
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=153.24 Aligned_cols=234 Identities=15% Similarity=0.085 Sum_probs=145.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccc----cccchhhh---HHHHhCCcEEEEECCCC--CCCCc
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW----INTVDMRA---QYLRSKGILVWKLDNRG--TARRG 603 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~----~~~~~~~~---~~l~~~G~~v~~~d~rg--~g~~~ 603 (776)
+|.++++..+.+.+. ...|+||++||.+++....... ...|..++ ..|...+|.|+++|+|| +|.++
T Consensus 14 ~~~~~~y~~~g~~~~----~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~ 89 (351)
T TIGR01392 14 SDVRVAYETYGTLNA----ERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTG 89 (351)
T ss_pred CCceEEEEeccccCC----CCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCC
Confidence 567788888876432 1237899999977654211000 00122222 25557899999999999 45444
Q ss_pred hhhhh-hh---hhccCCccHHHHHHHHHHHHHcCCCCCCc-EEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc
Q 004067 604 LKFEA-SI---KHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678 (776)
Q Consensus 604 ~~~~~-~~---~~~~~~~~~~D~~~~i~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 678 (776)
..-.. .. ......+.++|+.+.+..++++. ..++ +.++||||||++++.++.++|++++++|+.++.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 167 (351)
T TIGR01392 90 PSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAW 167 (351)
T ss_pred CCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHH
Confidence 21100 00 01112345778877777776654 3357 999999999999999999999999999988765421100
Q ss_pred c---------c----------cc---------------------------cccccCCC-CC-----------Cccch---
Q 004067 679 D---------T----------FY---------------------------TEKYMGLP-SE-----------DPVGY--- 697 (776)
Q Consensus 679 ~---------~----------~~---------------------------~~~~~~~~-~~-----------~~~~~--- 697 (776)
. . .+ ...+.... .. ..+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (351)
T TIGR01392 168 CIAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRY 247 (351)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHH
Confidence 0 0 00 00000000 00 00000
Q ss_pred ---------------------hcCC-------hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEE-e
Q 004067 698 ---------------------EYSS-------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI-F 748 (776)
Q Consensus 698 ---------------------~~~~-------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~-~ 748 (776)
...+ ....+.+|++|+|+++|+.|..+|+..++.+.+.+......++++. +
T Consensus 248 ~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~ 327 (351)
T TIGR01392 248 QGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIE 327 (351)
T ss_pred HHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeC
Confidence 0000 1245667889999999999999999999999988865443434444 4
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 749 PDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 749 ~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++||.. ..+.++++.+.+.+||+
T Consensus 328 ~~~GH~~-~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 328 SPYGHDA-FLVETDQVEELIRGFLR 351 (351)
T ss_pred CCCCcch-hhcCHHHHHHHHHHHhC
Confidence 6899977 56788999999999974
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-12 Score=135.72 Aligned_cols=284 Identities=13% Similarity=0.018 Sum_probs=165.7
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCC
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCS 158 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~ 158 (776)
..|++||+++++....... ..++....|+| ||+.+++. .++.|++||+.++
T Consensus 11 ~~v~~~d~~t~~~~~~~~~------------------------~~~~~~l~~~~---dg~~l~~~~~~~~~v~~~d~~~~ 63 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPV------------------------GQRPRGITLSK---DGKLLYVCASDSDTIQVIDLATG 63 (300)
T ss_pred CEEEEEECCCCceEEEEEC------------------------CCCCCceEECC---CCCEEEEEECCCCeEEEEECCCC
Confidence 4799999998876554431 12345678999 99987654 4578999999988
Q ss_pred ccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEEC
Q 004067 159 KPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWS 236 (776)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 236 (776)
+....+.... ....+.|+|||+.++... ++.|+++|+.+++.......+.. ...+.|+
T Consensus 64 ~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~------------------~~~~~~~ 123 (300)
T TIGR03866 64 EVIGTLPSGP--DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE------------------PEGMAVS 123 (300)
T ss_pred cEEEeccCCC--CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC------------------cceEEEC
Confidence 7763344332 245689999999876654 35799999987654322111110 2367899
Q ss_pred CCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceE
Q 004067 237 LDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYL 316 (776)
Q Consensus 237 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 316 (776)
|||+.+++...+. ..++.||.++++...... .....
T Consensus 124 ~dg~~l~~~~~~~-----------------------------------~~~~~~d~~~~~~~~~~~---------~~~~~ 159 (300)
T TIGR03866 124 PDGKIVVNTSETT-----------------------------------NMAHFIDTKTYEIVDNVL---------VDQRP 159 (300)
T ss_pred CCCCEEEEEecCC-----------------------------------CeEEEEeCCCCeEEEEEE---------cCCCc
Confidence 9999888765321 124567777765543211 11123
Q ss_pred EEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EEEEeccCceeecccccccCCCCcccc-CCeEEEEeccCCceE
Q 004067 317 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVNLHDCFTPLDKGVTKY-SGGFIWASEKTGFRH 394 (776)
Q Consensus 317 ~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~ 394 (776)
..++|+|||+.+++... ....|++||+++++.. .+.... .... .. ...+. .+.++ ++..+|.+.. +...
T Consensus 160 ~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~-~~~~-~~-~~~~~--~i~~s~dg~~~~~~~~-~~~~ 230 (300)
T TIGR03866 160 RFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEI-PGVH-PE-AVQPV--GIKLTKDGKTAFVALG-PANR 230 (300)
T ss_pred cEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecc-cccc-cc-cCCcc--ceEECCCCCEEEEEcC-CCCe
Confidence 45899999997766532 2346999999988653 332211 1000 00 00010 11222 2334444422 1237
Q ss_pred EEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcC
Q 004067 395 LYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDH 474 (776)
Q Consensus 395 l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~sp 474 (776)
|.+||+.+++..........+..+ .|+|+|++||.....++ .+.+|.+. .+. ...++.-+...+.++++|
T Consensus 231 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~--~i~v~d~~---~~~----~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLLVGQRVWQL-AFTPDEKYLLTTNGVSN--DVSVIDVA---ALK----VIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred EEEEECCCCcEEEEEEeCCCcceE-EECCCCCEEEEEcCCCC--eEEEEECC---CCc----EEEEEEcccccceeEeCC
Confidence 999998877654322222233344 49999998876654333 25555544 232 455665555566677665
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-14 Score=144.91 Aligned_cols=214 Identities=14% Similarity=0.076 Sum_probs=134.8
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
..++. +|.++++.... ..|.|||+||.+.... .|......|.+ +|.|+++|+||+|.|....
T Consensus 17 ~~~~~-~~~~i~y~~~G---------~~~~iv~lHG~~~~~~-------~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~ 78 (286)
T PRK03204 17 RWFDS-SRGRIHYIDEG---------TGPPILLCHGNPTWSF-------LYRDIIVALRD-RFRCVAPDYLGFGLSERPS 78 (286)
T ss_pred eEEEc-CCcEEEEEECC---------CCCEEEEECCCCccHH-------HHHHHHHHHhC-CcEEEEECCCCCCCCCCCC
Confidence 34555 56667655321 2268999999764322 34445566654 6999999999999886421
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-c-----cc-
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-G-----YD- 679 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~-~-----~~- 679 (776)
. .....+++.+.+..++++. +.+++.++||||||.+++.++..+|++++++|+.++..... . +.
T Consensus 79 ~-------~~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 149 (286)
T PRK03204 79 G-------FGYQIDEHARVIGEFVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSR 149 (286)
T ss_pred c-------cccCHHHHHHHHHHHHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHH
Confidence 1 1234677777777777654 44689999999999999999999999999998876542100 0 00
Q ss_pred --------------ccccccccC----CCCCC--ccchhc-----------------C---C-hhhh----hcc--CCCc
Q 004067 680 --------------TFYTEKYMG----LPSED--PVGYEY-----------------S---S-VMHH----VHK--MKGK 712 (776)
Q Consensus 680 --------------~~~~~~~~~----~~~~~--~~~~~~-----------------~---~-~~~~----~~~--i~~P 712 (776)
..+..+++. ..... ...+.. . . .+.. +.+ +++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 229 (286)
T PRK03204 150 VMSSPPVQYAILRRNFFVERLIPAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKP 229 (286)
T ss_pred HhccccchhhhhhhhHHHHHhccccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCC
Confidence 000011110 00000 000000 0 0 0000 111 1789
Q ss_pred EEEEecCCCCccChHH-HHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 713 LLLVHGMIDENVHFRH-TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
+|+++|+.|..+++.. .+.+.+.+ .+.++++++++||.+ ..+.++++.+.+.+||
T Consensus 230 tliI~G~~D~~~~~~~~~~~~~~~i----p~~~~~~i~~aGH~~-~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 230 TLLVWGMKDVAFRPKTILPRLRATF----PDHVLVELPNAKHFI-QEDAPDRIAAAIIERF 285 (286)
T ss_pred eEEEecCCCcccCcHHHHHHHHHhc----CCCeEEEcCCCcccc-cccCHHHHHHHHHHhc
Confidence 9999999999886653 44444443 567899999999987 6788999999999987
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-14 Score=146.37 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=150.9
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 531 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 531 ~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
...+..+.+.+|.|.. ....+.|+||++|||+........ ....+...+...|+.|+++|||-..+..
T Consensus 58 ~~~~~~~~~~~y~p~~--~~~~~~p~vly~HGGg~~~g~~~~---~~~~~~~~~~~~g~~vv~vdYrlaPe~~------- 125 (312)
T COG0657 58 GPSGDGVPVRVYRPDR--KAAATAPVVLYLHGGGWVLGSLRT---HDALVARLAAAAGAVVVSVDYRLAPEHP------- 125 (312)
T ss_pred CCCCCceeEEEECCCC--CCCCCCcEEEEEeCCeeeecChhh---hHHHHHHHHHHcCCEEEecCCCCCCCCC-------
Confidence 3345558899999922 122468999999998765432211 1234566677899999999999544331
Q ss_pred hhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCCCCccc-ccc--
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDG-YDT-- 680 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~~~~~~-~~~-- 680 (776)
....++|+.+++.++.++ ..+|+++|+++|+|.||.+++.++..-.+ ...+.++++|..+... ...
T Consensus 126 ----~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~ 201 (312)
T COG0657 126 ----FPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLP 201 (312)
T ss_pred ----CCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchh
Confidence 122478999999999986 35789999999999999999999875332 4578888888877653 100
Q ss_pred ---------------cccccccCCCCCCccchhcCChhhh--hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCe
Q 004067 681 ---------------FYTEKYMGLPSEDPVGYEYSSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 743 (776)
Q Consensus 681 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 743 (776)
.+...+......... ...+|+.. +.. -.|+++++|+.|.+.+ +...+.++|++.|+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~ 276 (312)
T COG0657 202 GYGEADLLDAAAILAWFADLYLGAAPDRED--PEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPV 276 (312)
T ss_pred hcCCccccCHHHHHHHHHHHhCcCccccCC--CccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeE
Confidence 011111111110000 11222222 233 4789999999999887 8899999999999999
Q ss_pred EEEEecCCCCCCC--CCCcHHHHHHHHHHHHHH
Q 004067 744 EILIFPDERHMPR--RHRDRIYMEERIWEFIER 774 (776)
Q Consensus 744 ~~~~~~~~~H~~~--~~~~~~~~~~~~~~fl~~ 774 (776)
+++.+++..|.|. ........+..+.+|++.
T Consensus 277 ~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 277 ELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred EEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999873 222344456677777764
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=149.28 Aligned_cols=187 Identities=19% Similarity=0.213 Sum_probs=123.5
Q ss_pred EEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCC
Q 004067 557 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAK 636 (776)
Q Consensus 557 vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id 636 (776)
||++||.+++.. .|..++..|+ +||.|+++|+||+|.+..... ......++....+..+++.. .
T Consensus 1 vv~~hG~~~~~~-------~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~l~~~l~~~--~ 64 (228)
T PF12697_consen 1 VVFLHGFGGSSE-------SWDPLAEALA-RGYRVIAFDLPGHGRSDPPPD------YSPYSIEDYAEDLAELLDAL--G 64 (228)
T ss_dssp EEEE-STTTTGG-------GGHHHHHHHH-TTSEEEEEECTTSTTSSSHSS------GSGGSHHHHHHHHHHHHHHT--T
T ss_pred eEEECCCCCCHH-------HHHHHHHHHh-CCCEEEEEecCCccccccccc------cCCcchhhhhhhhhhccccc--c
Confidence 789999877653 3455677774 799999999999998865321 11223555555555555543 2
Q ss_pred CCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc------cccc---------------ccccC-CCCCCc
Q 004067 637 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------TFYT---------------EKYMG-LPSEDP 694 (776)
Q Consensus 637 ~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------~~~~---------------~~~~~-~~~~~~ 694 (776)
.+++.++|||+||.+++.++.++|+.++++++.+|........ ..+. ..+.. ......
T Consensus 65 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (228)
T PF12697_consen 65 IKKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEP 144 (228)
T ss_dssp TSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cccccccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccc
Confidence 3689999999999999999999999999999999887532110 0000 00000 000000
Q ss_pred ------------cc----hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC
Q 004067 695 ------------VG----YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 758 (776)
Q Consensus 695 ------------~~----~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~ 758 (776)
.. +...+....+++++.|+++++|++|..++......+.+.+ .++++++++++||.+ ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~ 219 (228)
T PF12697_consen 145 EDLIRSSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKL----PNAELVVIPGAGHFL-FL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHS----TTEEEEEETTSSSTH-HH
T ss_pred cccccccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHC----CCCEEEEECCCCCcc-HH
Confidence 00 0112333567788999999999999999966666666543 578999999999986 33
Q ss_pred CcHHHH
Q 004067 759 RDRIYM 764 (776)
Q Consensus 759 ~~~~~~ 764 (776)
++++++
T Consensus 220 ~~p~~~ 225 (228)
T PF12697_consen 220 EQPDEV 225 (228)
T ss_dssp HSHHHH
T ss_pred HCHHHH
Confidence 445443
|
... |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=134.67 Aligned_cols=275 Identities=13% Similarity=0.073 Sum_probs=188.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+....||+||+.||.-+ ..+.+.+|+..+.+..+.+. .+...+....|+|
T Consensus 178 is~~~fS~ds~~laT~s-----wsG~~kvW~~~~~~~~~~l~-----------------------gH~~~v~~~~fhP-- 227 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGS-----WSGLVKVWSVPQCNLLQTLR-----------------------GHTSRVGAAVFHP-- 227 (459)
T ss_pred ceeeEeecCCCeEEEee-----cCCceeEeecCCcceeEEEe-----------------------ccccceeeEEEcc--
Confidence 46779999999999443 33468888888876655553 1224678899999
Q ss_pred CC--ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCC
Q 004067 137 SK--KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 137 ~d--g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
. +..|+.. .|+.+.+|++++..+...|+.+. .++..++|.|+|+.|+-.+-. ...+||+.++..-.+-.+...
T Consensus 228 -~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~-~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~- 304 (459)
T KOG0272|consen 228 -VDSDLNLATASADGTVKLWKLSQETPLQDLEGHL-ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK- 304 (459)
T ss_pred -CCCccceeeeccCCceeeeccCCCcchhhhhcch-hhheeeeecCCCceeeecccccchhhcccccchhhHhhccccc-
Confidence 5 5567755 88999999999976665777665 469999999999999988754 466789988876544332221
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
+ +..++|.|||.-++....|. --.|||+
T Consensus 305 ----~------------v~~iaf~~DGSL~~tGGlD~------------------------------------~~RvWDl 332 (459)
T KOG0272|consen 305 ----G------------VFSIAFQPDGSLAATGGLDS------------------------------------LGRVWDL 332 (459)
T ss_pred ----c------------cceeEecCCCceeeccCccc------------------------------------hhheeec
Confidence 1 45789999999666544331 2378999
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeeccccccc
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTP 371 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~ 371 (776)
.+|...-+ +-++...+..++|||+|..|+..+ .+....+||+..... ..+..+.+- ...-.|.|
T Consensus 333 Rtgr~im~--------L~gH~k~I~~V~fsPNGy~lATgs----~Dnt~kVWDLR~r~~ly~ipAH~nl---VS~Vk~~p 397 (459)
T KOG0272|consen 333 RTGRCIMF--------LAGHIKEILSVAFSPNGYHLATGS----SDNTCKVWDLRMRSELYTIPAHSNL---VSQVKYSP 397 (459)
T ss_pred ccCcEEEE--------ecccccceeeEeECCCceEEeecC----CCCcEEEeeecccccceecccccch---hhheEecc
Confidence 98876544 145777899999999998877655 556688899876443 334333322 11122433
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCC-ceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEE
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~ 444 (776)
..+.++.++.-++ .+.+|...+ ...+.|..++..|.+.. .++||..|+-.+ .+.+ .+||.
T Consensus 398 -------~~g~fL~TasyD~--t~kiWs~~~~~~~ksLaGHe~kV~s~D-is~d~~~i~t~s-~DRT--~KLW~ 458 (459)
T KOG0272|consen 398 -------QEGYFLVTASYDN--TVKIWSTRTWSPLKSLAGHEGKVISLD-ISPDSQAIATSS-FDRT--IKLWR 458 (459)
T ss_pred -------cCCeEEEEcccCc--ceeeecCCCcccchhhcCCccceEEEE-eccCCceEEEec-cCce--eeecc
Confidence 2455777776677 666776544 45678888888888776 899998655444 4433 67774
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=144.77 Aligned_cols=189 Identities=10% Similarity=0.044 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|...+..| .+|.|+++|+||+|.|..... ..++++...+..++++.
T Consensus 3 p~vvllHG~~~~~~-------~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~~---------~~~~~~~~~l~~~l~~~- 63 (242)
T PRK11126 3 PWLVFLHGLLGSGQ-------DWQPVGEAL--PDYPRLYIDLPGHGGSAAISV---------DGFADVSRLLSQTLQSY- 63 (242)
T ss_pred CEEEEECCCCCChH-------HHHHHHHHc--CCCCEEEecCCCCCCCCCccc---------cCHHHHHHHHHHHHHHc-
Confidence 67999999877643 344456666 369999999999998864321 12444444444444433
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCC-ceEEEEEcCCCCCcccc-------------cccccc--------cc-----c
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDGY-------------DTFYTE--------KY-----M 687 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~~v~~~~~~~~~~~-------------~~~~~~--------~~-----~ 687 (776)
..+++.++||||||.+++.++.++++ +++++++.++....... ...+.. .+ .
T Consensus 64 -~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (242)
T PRK11126 64 -NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVF 142 (242)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchh
Confidence 34699999999999999999999865 48888887654321100 000000 00 0
Q ss_pred -CCCCCCccc----------------h------hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 688 -GLPSEDPVG----------------Y------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 688 -~~~~~~~~~----------------~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
......... + ...+....+.++++|+++++|++|..+. .+.+. .+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~ 212 (242)
T PRK11126 143 ASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-----LALP 212 (242)
T ss_pred hccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-----hcCe
Confidence 000000000 0 0011223566888999999999997542 22222 2578
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++++++||.+ ..+.++++.+.+.+||.+
T Consensus 213 ~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 213 LHVIPNAGHNA-HRENPAAFAASLAQILRL 241 (242)
T ss_pred EEEeCCCCCch-hhhChHHHHHHHHHHHhh
Confidence 99999999977 668899999999999975
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=135.65 Aligned_cols=178 Identities=17% Similarity=0.107 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHh--CCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
|.||++||.+++.. .|.. ..+...+.+ .+|.|+++|+||++ .+..+.+..+.++
T Consensus 2 p~illlHGf~ss~~---~~~~--~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~ 57 (190)
T PRK11071 2 STLLYLHGFNSSPR---SAKA--TLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLE 57 (190)
T ss_pred CeEEEECCCCCCcc---hHHH--HHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHH
Confidence 68999999766543 2321 122455554 37999999999763 1234444445444
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc-ccccccccc---cccCCCCCC-ccch---hcCChhh
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW-DGYDTFYTE---KYMGLPSED-PVGY---EYSSVMH 704 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~-~~~~~~~~~---~~~~~~~~~-~~~~---~~~~~~~ 704 (776)
. +.+++.++||||||++++.++.++|. + +++.+|..+. ......... .+......- ...+ ....+.
T Consensus 58 ~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 131 (190)
T PRK11071 58 H--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKVMQID- 131 (190)
T ss_pred c--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHhcCCc-
Confidence 3 34589999999999999999999884 3 4556665552 111111000 000000000 0001 111111
Q ss_pred hhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 705 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 705 ~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.+. ...|++++||++|+++|+..+.++++.+ .++++++++|.+.. .+++.+.+.+|+.
T Consensus 132 ~i~-~~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~f~~---~~~~~~~i~~fl~ 189 (190)
T PRK11071 132 PLE-SPDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHAFVG---FERYFNQIVDFLG 189 (190)
T ss_pred cCC-ChhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcchhh---HHHhHHHHHHHhc
Confidence 122 5578899999999999999999999853 56688999998844 4788899999975
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.8e-14 Score=140.68 Aligned_cols=182 Identities=16% Similarity=0.108 Sum_probs=121.9
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhcc
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 614 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~ 614 (776)
..+++.++.|... +++|+|+++||+..... .|..+++.|+++||.|+++|++|.+....
T Consensus 37 ~~~p~~v~~P~~~----g~~PvVv~lHG~~~~~~-------~y~~l~~~Las~G~~VvapD~~g~~~~~~---------- 95 (313)
T PLN00021 37 PPKPLLVATPSEA----GTYPVLLFLHGYLLYNS-------FYSQLLQHIASHGFIVVAPQLYTLAGPDG---------- 95 (313)
T ss_pred CCceEEEEeCCCC----CCCCEEEEECCCCCCcc-------cHHHHHHHHHhCCCEEEEecCCCcCCCCc----------
Confidence 5689999999764 57899999999765422 23456788999999999999987542211
Q ss_pred CCccHHHHHHHHHHHHHc--------CCCCCCcEEEEeechHHHHHHHHHhhCCC-----ceEEEEEcCCCCCccccccc
Q 004067 615 GRIDAEDQLTGAEWLIKQ--------GLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~--------~~id~~~i~l~G~S~GG~~a~~~a~~~~~-----~~~~~v~~~~~~~~~~~~~~ 681 (776)
..+++|..++++|+.+. ..++.++++|+||||||.+++.++..+++ .+++++++.|+.......
T Consensus 96 -~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-- 172 (313)
T PLN00021 96 -TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-- 172 (313)
T ss_pred -hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc--
Confidence 11245566666666642 23567899999999999999999998764 578888888875421000
Q ss_pred ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCC-----c----cChH-HHHHHHHHHHHCCCCeEEEEecCC
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE-----N----VHFR-HTARLINALVAARKPYEILIFPDE 751 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~-----~----v~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 751 (776)
...+.. + . ......++..|+|++++..|. . .|.. +..++++.+ ..+..+++.+++
T Consensus 173 -----~~~p~i----l-~--~~~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~---~~~~~~~~~~~~ 237 (313)
T PLN00021 173 -----QTPPPV----L-T--YAPHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNEC---KAPAVHFVAKDY 237 (313)
T ss_pred -----CCCCcc----c-c--cCcccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhc---CCCeeeeeecCC
Confidence 000100 0 0 001122367899999998763 2 2233 446777765 457788899999
Q ss_pred CCCC
Q 004067 752 RHMP 755 (776)
Q Consensus 752 ~H~~ 755 (776)
+|.-
T Consensus 238 gH~~ 241 (313)
T PLN00021 238 GHMD 241 (313)
T ss_pred Ccce
Confidence 9973
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-14 Score=148.92 Aligned_cols=236 Identities=15% Similarity=0.072 Sum_probs=146.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccc------cccchhhh---HHHHhCCcEEEEECCCCC-CCC
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW------INTVDMRA---QYLRSKGILVWKLDNRGT-ARR 602 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~------~~~~~~~~---~~l~~~G~~v~~~d~rg~-g~~ 602 (776)
+|..+++..+...+. ...|+||++||.+++......+ ...|..++ ..+...+|.|+++|++|+ +++
T Consensus 31 ~~~~~~y~~~G~~~~----~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s 106 (379)
T PRK00175 31 PPVELAYETYGTLNA----DRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGS 106 (379)
T ss_pred CCceEEEEeccccCC----CCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCC
Confidence 455677777764221 2248999999987765411100 00122222 133356899999999983 433
Q ss_pred -chhhhhh---h-h-hccCCccHHHHHHHHHHHHHcCCCCCCc-EEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 603 -GLKFEAS---I-K-HNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 603 -~~~~~~~---~-~-~~~~~~~~~D~~~~i~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
+...... . + .....+.++++.+.+..++++. ..++ +.++||||||++++.++.++|++++++|++++....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 184 (379)
T PRK00175 107 TGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARL 184 (379)
T ss_pred CCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCccc
Confidence 2211000 0 0 0111345777777777776654 3356 589999999999999999999999999988754321
Q ss_pred ccc---------c-----cc-----c----------------------------cccccC----C-C--C----CCccch
Q 004067 676 DGY---------D-----TF-----Y----------------------------TEKYMG----L-P--S----EDPVGY 697 (776)
Q Consensus 676 ~~~---------~-----~~-----~----------------------------~~~~~~----~-~--~----~~~~~~ 697 (776)
... . .. | ...+.. . + + .....+
T Consensus 185 ~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (379)
T PRK00175 185 SAQNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESY 264 (379)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHH
Confidence 000 0 00 0 000000 0 0 0 000000
Q ss_pred ---------hc---------------C--------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE
Q 004067 698 ---------EY---------------S--------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 745 (776)
Q Consensus 698 ---------~~---------------~--------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 745 (776)
.. . +....+.+|++|+|+|+|+.|..+|+..++.+.+.+...+..+++
T Consensus 265 l~~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l 344 (379)
T PRK00175 265 LRYQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSY 344 (379)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEE
Confidence 00 0 122345788999999999999999999999999998776666788
Q ss_pred EEec-CCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 746 LIFP-DERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 746 ~~~~-~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++++ ++||.. ..+.++++.+.+.+||.+.
T Consensus 345 ~~i~~~~GH~~-~le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 345 AEIDSPYGHDA-FLLDDPRYGRLVRAFLERA 374 (379)
T ss_pred EEeCCCCCchh-HhcCHHHHHHHHHHHHHhh
Confidence 8775 899987 5678889999999999764
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-12 Score=120.36 Aligned_cols=280 Identities=11% Similarity=0.063 Sum_probs=184.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCC-----ce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTC-----KQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR 129 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~-----~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (776)
.+++++..+++..|.+.+.++ ..+.+|++... .+ ++++.| ..-+..
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD----k~ii~W~L~~dd~~~G~~~r~~~GH------------------------sH~v~d 68 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD----KTIIVWKLTSDDIKYGVPVRRLTGH------------------------SHFVSD 68 (315)
T ss_pred eEEEEEeecCCCceEEEcccc----eEEEEEEeccCccccCceeeeeecc------------------------ceEecc
Confidence 368889999988888877665 45888888643 23 334432 235778
Q ss_pred EEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEee
Q 004067 130 YEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTH 207 (776)
Q Consensus 130 ~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~ 207 (776)
...++ ||++.+.. .++.+.+||+.+|+.++++..+. ..+...+||||.++|+--+. +-|-+|+..++....+..
T Consensus 69 v~~s~---dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~-~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~ 144 (315)
T KOG0279|consen 69 VVLSS---DGNFALSASWDGTLRLWDLATGESTRRFVGHT-KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE 144 (315)
T ss_pred eEEcc---CCceEEeccccceEEEEEecCCcEEEEEEecC-CceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec
Confidence 88899 99987765 78899999999998884554443 35889999999999988765 459999998887766655
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
..+ .+| +.-+.|+|.....+.++... .-.+
T Consensus 145 ~~~--------~~W--------VscvrfsP~~~~p~Ivs~s~----------------------------------Dktv 174 (315)
T KOG0279|consen 145 DSH--------REW--------VSCVRFSPNESNPIIVSASW----------------------------------DKTV 174 (315)
T ss_pred CCC--------cCc--------EEEEEEcCCCCCcEEEEccC----------------------------------CceE
Confidence 431 244 34788999853333333211 0347
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHD 367 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 367 (776)
.+||+.+-+.+.. ..++.+++..+.+||||..++. +.++..+++||++.++.-.-.++.+... .-
T Consensus 175 KvWnl~~~~l~~~--------~~gh~~~v~t~~vSpDGslcas----Ggkdg~~~LwdL~~~k~lysl~a~~~v~---sl 239 (315)
T KOG0279|consen 175 KVWNLRNCQLRTT--------FIGHSGYVNTVTVSPDGSLCAS----GGKDGEAMLWDLNEGKNLYSLEAFDIVN---SL 239 (315)
T ss_pred EEEccCCcchhhc--------cccccccEEEEEECCCCCEEec----CCCCceEEEEEccCCceeEeccCCCeEe---eE
Confidence 9999999887665 2578899999999999987765 3477889999999887633233333211 11
Q ss_pred ccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccC--------CeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEG--------DWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~--------~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
.|+|... .+...... .|.+|+++++... .|... .....-.+.||+||.++|..-+...
T Consensus 240 ~fspnry--------wL~~at~~---sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~-- 306 (315)
T KOG0279|consen 240 CFSPNRY--------WLCAATAT---SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV-- 306 (315)
T ss_pred EecCCce--------eEeeccCC---ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc--
Confidence 3444322 12222222 4889998876421 12111 1222333569999998766655432
Q ss_pred eeeEEEEE
Q 004067 439 ESHLYCAK 446 (776)
Q Consensus 439 ~~~l~~~~ 446 (776)
+.+|.+.
T Consensus 307 -irv~qv~ 313 (315)
T KOG0279|consen 307 -IRVWQVA 313 (315)
T ss_pred -EEEEEee
Confidence 6777664
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=133.98 Aligned_cols=193 Identities=14% Similarity=0.133 Sum_probs=120.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch--hhhhhhhhcc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL--KFEASIKHNC 614 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~--~~~~~~~~~~ 614 (776)
|.+.+|.|+... ..+.|+||++||..++.. .+... ..+.+...++||+|+.|+......... +|.. .....
T Consensus 1 l~Y~lYvP~~~~--~~~~PLVv~LHG~~~~a~---~~~~~-s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~ 73 (220)
T PF10503_consen 1 LSYRLYVPPGAP--RGPVPLVVVLHGCGQSAE---DFAAG-SGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQR 73 (220)
T ss_pred CcEEEecCCCCC--CCCCCEEEEeCCCCCCHH---HHHhh-cCHHHHhhcCCeEEEcccccccCCCCCcccccc-ccccc
Confidence 468899998642 246899999999766543 12111 112344557899999999643221111 1211 11222
Q ss_pred CCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc--cccccccccCCCCC
Q 004067 615 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--DTFYTEKYMGLPSE 692 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~ 692 (776)
+..+...+...++++.++..||++||++.|+|.||+|+..+++.+|++|.++.+.++...-..- ...+.....+.. .
T Consensus 74 g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~~m~~g~~-~ 152 (220)
T PF10503_consen 74 GGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALSAMRSGPR-P 152 (220)
T ss_pred CccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHHHhhCCCC-C
Confidence 3345666778899999998999999999999999999999999999999999988876421100 000000000110 0
Q ss_pred Cccc-hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHC
Q 004067 693 DPVG-YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 739 (776)
Q Consensus 693 ~~~~-~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 739 (776)
.+.. ..........+ ..|++++||..|..|.+.+..++.+.+...
T Consensus 153 ~p~~~~~a~~~~g~~~--~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 153 APAAAWGARSDAGAYP--GYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred ChHHHHHhhhhccCCC--CCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 0000 00000000011 249999999999999999999988887653
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-14 Score=137.80 Aligned_cols=211 Identities=18% Similarity=0.158 Sum_probs=133.9
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchh
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 605 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~ 605 (776)
.+.++++.|. +.++.+.|... ++.|+||++||.++... .+...+..++..|+++||.|+.+|+||+|.+...
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~----~~~~~VlllHG~g~~~~---~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~ 73 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAV----GPRGVVIYLPPFAEEMN---KSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGD 73 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCC----CCceEEEEECCCccccc---chhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCc
Confidence 3556665665 67888877653 35689999999654321 1222334457888999999999999999988643
Q ss_pred hhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc---
Q 004067 606 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY--- 682 (776)
Q Consensus 606 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~--- 682 (776)
....... ...+|+..+++++.+.. ..+++++||||||.+++.++.++|+.++++|+.+|+..-..+...+
T Consensus 74 ~~~~~~~----~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl 146 (266)
T TIGR03101 74 FAAARWD----VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRL 146 (266)
T ss_pred cccCCHH----HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHH
Confidence 3221111 12678888999988753 4689999999999999999999999999999999987643221110
Q ss_pred ---cccccCCCCC---------------CccchhcC-ChhhhhccC--------CCcEEEEecCCC-CccChHHHHHHHH
Q 004067 683 ---TEKYMGLPSE---------------DPVGYEYS-SVMHHVHKM--------KGKLLLVHGMID-ENVHFRHTARLIN 734 (776)
Q Consensus 683 ---~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~i--------~~P~lii~G~~D-~~v~~~~~~~~~~ 734 (776)
.+..-+.... ....|.-. .....+.++ ..++|++.-..+ .........++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (266)
T TIGR03101 147 RLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPKNCPVHWFEVRPEEGATLSPVFSRLGE 226 (266)
T ss_pred HHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCCCCceEEEEeccccCCCCCHHHHHHHH
Confidence 0000000000 00000000 001111111 346777765432 2233446788999
Q ss_pred HHHHCCCCeEEEEecCC
Q 004067 735 ALVAARKPYEILIFPDE 751 (776)
Q Consensus 735 ~l~~~~~~~~~~~~~~~ 751 (776)
.+++.|..++...+++.
T Consensus 227 ~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 227 QWVQSGVEVTVDLVPGP 243 (266)
T ss_pred HHHHcCCeEeeeecCCc
Confidence 99999999999999987
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-12 Score=131.48 Aligned_cols=272 Identities=14% Similarity=0.102 Sum_probs=176.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|+|||+.|++.+. ...|++|++.+++........ ...+....|+|
T Consensus 12 i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~-----------------------~~~i~~~~~~~-- 61 (289)
T cd00200 12 VTCVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRTLKGH-----------------------TGPVRDVAASA-- 61 (289)
T ss_pred EEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEEEecC-----------------------CcceeEEEECC--
Confidence 478999999999997664 246999999877643332211 13466889999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
+++.|++. .++.|++||+.+++....+..... .+..+.|+|+++.++... ++.|+++++.+++..........
T Consensus 62 -~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--- 136 (289)
T cd00200 62 -DGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD--- 136 (289)
T ss_pred -CCCEEEEEcCCCeEEEEEcCcccceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC---
Confidence 99888877 488999999998655534443332 478899999988777776 67899999987655443321110
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.+..+.|+|+++.|+....+ ..+++||+.+
T Consensus 137 --------------~i~~~~~~~~~~~l~~~~~~------------------------------------~~i~i~d~~~ 166 (289)
T cd00200 137 --------------WVNSVAFSPDGTFVASSSQD------------------------------------GTIKLWDLRT 166 (289)
T ss_pred --------------cEEEEEEcCcCCEEEEEcCC------------------------------------CcEEEEEccc
Confidence 14578899998766654311 3478899886
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccCceeecccccccCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELDSWVNLHDCFTPLD 373 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~~~~~~~~ 373 (776)
++....- ..+...+..+.|+|+++.+++... +..|.+||+.++...... .+......
T Consensus 167 ~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~~~i~~---------- 224 (289)
T cd00200 167 GKCVATL--------TGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLRGHENGVNS---------- 224 (289)
T ss_pred cccceeE--------ecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchhhcCCceEE----------
Confidence 6543321 234456888999999987776653 456999999876654443 22221111
Q ss_pred CCccccC-CeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 374 KGVTKYS-GGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 374 ~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
+.+.+ +.+++....+| .|++|+...++ ...+..+...+..+. |+++++.++..+ .++ ..++|
T Consensus 225 --~~~~~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~-~d~--~i~iw 288 (289)
T cd00200 225 --VAFSPDGYLLASGSEDG--TIRVWDLRTGECVQTLSGHTNSVTSLA-WSPDGKRLASGS-ADG--TIRIW 288 (289)
T ss_pred --EEEcCCCcEEEEEcCCC--cEEEEEcCCceeEEEccccCCcEEEEE-ECCCCCEEEEec-CCC--eEEec
Confidence 12223 34555555466 88999987544 445554444555554 899988655443 333 26666
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-12 Score=130.59 Aligned_cols=269 Identities=10% Similarity=0.001 Sum_probs=159.6
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.++.|++||+.+++....+... . ....+.|+|||+.++.... +.|+++++.+++.......+..
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~-~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~------------ 74 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG-Q-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD------------ 74 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC-C-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC------------
Confidence 4678999999988766344322 2 2567899999998765543 5699999998876542222111
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...+.|+|||+.++...... ..|++||+.+++....
T Consensus 75 ------~~~~~~~~~g~~l~~~~~~~-----------------------------------~~l~~~d~~~~~~~~~--- 110 (300)
T TIGR03866 75 ------PELFALHPNGKILYIANEDD-----------------------------------NLVTVIDIETRKVLAE--- 110 (300)
T ss_pred ------ccEEEECCCCCEEEEEcCCC-----------------------------------CeEEEEECCCCeEEeE---
Confidence 22567999999776543211 3578999987654322
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-cCceeecccccccCCCCccccCCe
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGG 382 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 382 (776)
.........++|+|||+.++..... ...++.||.++++........ .+.. ..|++ ++..
T Consensus 111 ------~~~~~~~~~~~~~~dg~~l~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~s~-------dg~~ 170 (300)
T TIGR03866 111 ------IPVGVEPEGMAVSPDGKIVVNTSET---TNMAHFIDTKTYEIVDNVLVDQRPRF----AEFTA-------DGKE 170 (300)
T ss_pred ------eeCCCCcceEEECCCCCEEEEEecC---CCeEEEEeCCCCeEEEEEEcCCCccE----EEECC-------CCCE
Confidence 1111224568999999977766432 234667898877653322111 1100 11222 2223
Q ss_pred EEEEeccCCceEEEEEeCCCcee-eccccCC-------eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCc
Q 004067 383 FIWASEKTGFRHLYLHDINGTCL-GPITEGD-------WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT 454 (776)
Q Consensus 383 ~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~-------~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~ 454 (776)
+++.+..+| .|++||+++++. +.++... ..... ..+++||+.+++.....+ ...+| ++. .+.
T Consensus 171 l~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~s~dg~~~~~~~~~~~--~i~v~--d~~-~~~-- 240 (300)
T TIGR03866 171 LWVSSEIGG--TVSVIDVATRKVIKKITFEIPGVHPEAVQPVG-IKLTKDGKTAFVALGPAN--RVAVV--DAK-TYE-- 240 (300)
T ss_pred EEEEcCCCC--EEEEEEcCcceeeeeeeecccccccccCCccc-eEECCCCCEEEEEcCCCC--eEEEE--ECC-CCc--
Confidence 444444566 799999887653 3343210 01112 348999998777654432 24555 442 232
Q ss_pred cccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 455 LEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
....+.....+..++|+|||++|+...... ++|.++|..+++.++.+.
T Consensus 241 --~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 241 --VLDYLLVGQRVWQLAFTPDEKYLLTTNGVS---NDVSVIDVAALKVIKSIK 288 (300)
T ss_pred --EEEEEEeCCCcceEEECCCCCEEEEEcCCC---CeEEEEECCCCcEEEEEE
Confidence 223343344567889999999887654322 369999998888666553
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=150.36 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=113.8
Q ss_pred HHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCc-EEEEeechHHHHHHHHHhhCCC
Q 004067 583 YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPD 661 (776)
Q Consensus 583 ~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~~~ 661 (776)
.|...+|.|+++|+||+|.+... .....++...+..+++.. +.++ +.++||||||++++.++.++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~~~----------~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSLDV----------PIDTADQADAIALLLDAL--GIARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCCCCCCCCC----------CCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHHHHHHHHChH
Confidence 35445799999999999866321 012344444444444433 3335 5799999999999999999999
Q ss_pred ceEEEEEcCCCCCccc----ccc---c-------------------------------ccccccCCCC-------CCccc
Q 004067 662 VFQCAVSGAPVTSWDG----YDT---F-------------------------------YTEKYMGLPS-------EDPVG 696 (776)
Q Consensus 662 ~~~~~v~~~~~~~~~~----~~~---~-------------------------------~~~~~~~~~~-------~~~~~ 696 (776)
+++++|+.++...... +.. . +...+...+. .....
T Consensus 162 ~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T PRK08775 162 RVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAED 241 (343)
T ss_pred hhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHH
Confidence 9999998876532100 000 0 0000000000 00000
Q ss_pred h---------hcCC---------h----hhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecC-CCC
Q 004067 697 Y---------EYSS---------V----MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD-ERH 753 (776)
Q Consensus 697 ~---------~~~~---------~----~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H 753 (776)
+ ...+ . ...+.++++|+|+++|+.|..+|+..+.++.+.+ ..+.+++++++ +||
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i---~p~a~l~~i~~~aGH 318 (343)
T PRK08775 242 YLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGL---GPRGSLRVLRSPYGH 318 (343)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHc---CCCCeEEEEeCCccH
Confidence 0 0000 0 0124678899999999999999988888877765 24578999985 999
Q ss_pred CCCCCCcHHHHHHHHHHHHHH
Q 004067 754 MPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 754 ~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.. ..+.++.+...+.+||.+
T Consensus 319 ~~-~lE~Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 319 DA-FLKETDRIDAILTTALRS 338 (343)
T ss_pred HH-HhcCHHHHHHHHHHHHHh
Confidence 87 667899999999999975
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.6e-14 Score=144.99 Aligned_cols=216 Identities=11% Similarity=0.089 Sum_probs=138.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.++..+.+....+. ..|.||++||.+.+.. .|..++..|++ +|.|+++|+||+|.|......
T Consensus 112 ~~~~~~~y~~~G~~-------~~~~ivllHG~~~~~~-------~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~--- 173 (383)
T PLN03084 112 SDLFRWFCVESGSN-------NNPPVLLIHGFPSQAY-------SYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPG--- 173 (383)
T ss_pred CCceEEEEEecCCC-------CCCeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEECCCCCCCCCCCccc---
Confidence 46676665543322 2378999999876543 34445666764 799999999999988653211
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---------ccc--
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------YDT-- 680 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------~~~-- 680 (776)
....+.+.++...+..++++. ..+++.|+|||+||.+++.++.++|++++++|+.+|...... +..
T Consensus 174 -~~~~ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l 250 (383)
T PLN03084 174 -YGFNYTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFL 250 (383)
T ss_pred -ccccCCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHH
Confidence 011234566666666555543 335899999999999999999999999999999887642110 000
Q ss_pred ---ccc-------ccccC--CCC----CCccc------------------hhcC-Ch----hhhh------ccCCCcEEE
Q 004067 681 ---FYT-------EKYMG--LPS----EDPVG------------------YEYS-SV----MHHV------HKMKGKLLL 715 (776)
Q Consensus 681 ---~~~-------~~~~~--~~~----~~~~~------------------~~~~-~~----~~~~------~~i~~P~li 715 (776)
.+. ...+. .+. +.... +... .. ...+ .+++.|+|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLi 330 (383)
T PLN03084 251 LGEIFSQDPLRASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITV 330 (383)
T ss_pred hhhhhhcchHHHHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEE
Confidence 000 00000 000 00000 0000 00 0001 246889999
Q ss_pred EecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 716 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++|+.|..+++...+++++. .+.++.++++++|.+ ..+.++++.+.+.+||.+
T Consensus 331 I~G~~D~~v~~~~~~~~a~~-----~~a~l~vIp~aGH~~-~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 331 CWGLRDRWLNYDGVEDFCKS-----SQHKLIELPMAGHHV-QEDCGEELGGIISGILSK 383 (383)
T ss_pred EeeCCCCCcCHHHHHHHHHh-----cCCeEEEECCCCCCc-chhCHHHHHHHHHHHhhC
Confidence 99999999998877666653 256899999999977 668899999999999863
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=137.21 Aligned_cols=239 Identities=16% Similarity=0.087 Sum_probs=158.7
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCC--CCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYG--PPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 598 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~--~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg 598 (776)
....++..++.+||-.+..-.+.+....+. ....|+||++||-.++.. ......++..+.+.||.|+.++.||
T Consensus 90 ~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~-----~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 90 PVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSH-----ESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCCh-----hHHHHHHHHHHHhCCcEEEEECCCC
Confidence 456777888888998888777766543211 245699999999666543 1233445666778999999999999
Q ss_pred CCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC---CCceEEEEEcCCCCCc
Q 004067 599 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSW 675 (776)
Q Consensus 599 ~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---~~~~~~~v~~~~~~~~ 675 (776)
++++.-.-. .-+-....+|+.+++++++++. ...++..+|.||||.+.+.++++. ..+..|+.+.+|+--.
T Consensus 165 ~~g~~LtTp----r~f~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~ 238 (409)
T KOG1838|consen 165 LGGSKLTTP----RLFTAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLL 238 (409)
T ss_pred CCCCccCCC----ceeecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhh
Confidence 988743211 1222234889999999999885 346899999999999999999864 3355666666665311
Q ss_pred --------c----ccc--------------------------------------ccccccccCCCCCCccchhcCChhhh
Q 004067 676 --------D----GYD--------------------------------------TFYTEKYMGLPSEDPVGYEYSSVMHH 705 (776)
Q Consensus 676 --------~----~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (776)
. .|. ..+....++.+. ..+.|...++...
T Consensus 239 ~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~-~deYY~~aSs~~~ 317 (409)
T KOG1838|consen 239 AASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS-VDEYYKKASSSNY 317 (409)
T ss_pred hhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc-HHHHHhhcchhhh
Confidence 0 000 000000111111 2366778899999
Q ss_pred hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCC---cHHHHHHH-HHHHHHH
Q 004067 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR---DRIYMEER-IWEFIER 774 (776)
Q Consensus 706 ~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~-~~~fl~~ 774 (776)
+++|+.|+|+|++.+|+++|.. +.-.-+ ..+++++-+++-..+||--.... ....+++. +.+|+.+
T Consensus 318 v~~I~VP~L~ina~DDPv~p~~-~ip~~~--~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~ 387 (409)
T KOG1838|consen 318 VDKIKVPLLCINAADDPVVPEE-AIPIDD--IKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGN 387 (409)
T ss_pred cccccccEEEEecCCCCCCCcc-cCCHHH--HhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHH
Confidence 9999999999999999999875 222211 22357888888889999632211 33444555 7777764
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=140.57 Aligned_cols=204 Identities=17% Similarity=0.199 Sum_probs=134.6
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhC-CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
+..|.||++||...+.. .|+.....|.+. |+.|+++|.+|+|.++.... ...+...+....+..+.
T Consensus 56 ~~~~pvlllHGF~~~~~-------~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~------~~~y~~~~~v~~i~~~~ 122 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGASSF-------SWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPR------GPLYTLRELVELIRRFV 122 (326)
T ss_pred CCCCcEEEeccccCCcc-------cHhhhccccccccceEEEEEecCCCCcCCCCCC------CCceehhHHHHHHHHHH
Confidence 35689999999766433 333334444443 69999999999884432111 11245667777777666
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEE---EcCCCCCccccc---------------------------c
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV---SGAPVTSWDGYD---------------------------T 680 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v---~~~~~~~~~~~~---------------------------~ 680 (776)
.... ..++.++||||||++|..+|+.+|+.++.++ +..+........ .
T Consensus 123 ~~~~--~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 200 (326)
T KOG1454|consen 123 KEVF--VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVR 200 (326)
T ss_pred Hhhc--CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchh
Confidence 5542 2459999999999999999999999999998 444332210000 0
Q ss_pred cccccc---------------------cCCC-----CCC--ccch---h--cCChhhhhccCC-CcEEEEecCCCCccCh
Q 004067 681 FYTEKY---------------------MGLP-----SED--PVGY---E--YSSVMHHVHKMK-GKLLLVHGMIDENVHF 726 (776)
Q Consensus 681 ~~~~~~---------------------~~~~-----~~~--~~~~---~--~~~~~~~~~~i~-~P~lii~G~~D~~v~~ 726 (776)
.+.+.. +..+ ..+ .+.+ . .......+.++. +|+|+++|..|.++|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~ 280 (326)
T KOG1454|consen 201 LVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPL 280 (326)
T ss_pred heeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCH
Confidence 000000 0000 000 0000 0 123444566776 9999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 727 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+.+..+.+.+ .++++.+++++||.. +.+.++++.+.+..|+.++
T Consensus 281 ~~~~~~~~~~----pn~~~~~I~~~gH~~-h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 281 ELAEELKKKL----PNAELVEIPGAGHLP-HLERPEEVAALLRSFIARL 324 (326)
T ss_pred HHHHHHHhhC----CCceEEEeCCCCccc-ccCCHHHHHHHHHHHHHHh
Confidence 8666665544 778999999999987 6689999999999999875
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=144.81 Aligned_cols=223 Identities=16% Similarity=0.148 Sum_probs=140.2
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~ 616 (776)
+..+.|.|.... ...+.||++||......+... ..+..++.+|+++||.|+++|+||+|.+.... .+..
T Consensus 48 ~~l~~~~~~~~~---~~~~pvl~v~~~~~~~~~~d~--~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~------~~~d 116 (350)
T TIGR01836 48 VVLYRYTPVKDN---THKTPLLIVYALVNRPYMLDL--QEDRSLVRGLLERGQDVYLIDWGYPDRADRYL------TLDD 116 (350)
T ss_pred EEEEEecCCCCc---CCCCcEEEeccccccceeccC--CCCchHHHHHHHCCCeEEEEeCCCCCHHHhcC------CHHH
Confidence 455556665421 223458889985322221111 12345688999999999999999887543211 1111
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-----------------
Q 004067 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------------- 679 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~----------------- 679 (776)
+...++.+++++++++. ...++.++||||||.+++.+++.+|+.++++++.++..++....
T Consensus 117 ~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 194 (350)
T TIGR01836 117 YINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVD 194 (350)
T ss_pred HHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHH
Confidence 11345778888888765 34689999999999999999999999999999888765532100
Q ss_pred ------ccc--------------ccccc------CCCC----------------CCc---------cchhcCC-------
Q 004067 680 ------TFY--------------TEKYM------GLPS----------------EDP---------VGYEYSS------- 701 (776)
Q Consensus 680 ------~~~--------------~~~~~------~~~~----------------~~~---------~~~~~~~------- 701 (776)
..+ ...+. ..+. ... ..+....
T Consensus 195 ~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~ 274 (350)
T TIGR01836 195 TMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVE 274 (350)
T ss_pred hcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeE
Confidence 000 00000 0000 000 0000000
Q ss_pred ---hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHh
Q 004067 702 ---VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 702 ---~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~~~ 775 (776)
....+.++++|+|+++|++|.++++..+..+++.+. +.+.++++++ +||.. ......++++..+.+||.++
T Consensus 275 ~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~--~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 275 IGGRKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVS--SEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred ECCEEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcC--CCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHhC
Confidence 011255678999999999999999999988888763 2457888887 57764 23334688999999999864
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=131.53 Aligned_cols=227 Identities=17% Similarity=0.112 Sum_probs=152.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHH-HhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l-~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
....+..++|.|.... ...+.|+|||+|||+.... ...+ ..++.+...+ .+.+..|+++|||-..+..
T Consensus 70 ~~~~l~vRly~P~~~~-~~~~~p~lvyfHGGGf~~~-S~~~-~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~-------- 138 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSS-SETKLPVLVYFHGGGFCLG-SANS-PAYDSFCTRLAAELNCVVVSVDYRLAPEHP-------- 138 (336)
T ss_pred CCCCeEEEEEcCCCCC-cccCceEEEEEeCCccEeC-CCCC-chhHHHHHHHHHHcCeEEEecCcccCCCCC--------
Confidence 4455999999998753 2268899999999876543 1122 2334445555 5789999999999443221
Q ss_pred hccCCccHHHHHHHHHHHHHc----CCCCCCcEEEEeechHHHHHHHHHhhC------CCceEEEEEcCCCCCccccccc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQ----GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~----~~id~~~i~l~G~S~GG~~a~~~a~~~------~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
....++|..+++.|+.++ .++|.+||+|+|-|.||.+|..++.+. +-.+++.|++.|+.........
T Consensus 139 ---~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~ 215 (336)
T KOG1515|consen 139 ---FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTES 215 (336)
T ss_pred ---CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCH
Confidence 123488999999999885 568999999999999999999988652 3467999999998653211000
Q ss_pred -cc---------------ccc-cCCCCCC-ccchhcCChhh-----hh-ccCCCcEEEEecCCCCccChHHHHHHHHHHH
Q 004067 682 -YT---------------EKY-MGLPSED-PVGYEYSSVMH-----HV-HKMKGKLLLVHGMIDENVHFRHTARLINALV 737 (776)
Q Consensus 682 -~~---------------~~~-~~~~~~~-~~~~~~~~~~~-----~~-~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 737 (776)
+. ..+ +-.|... ...-...++.. .. ...-.|+|++.++.|... .+...++++|+
T Consensus 216 e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~Lk 293 (336)
T KOG1515|consen 216 EKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKLK 293 (336)
T ss_pred HHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHHH
Confidence 00 000 0111110 00000111111 11 122257999999999776 57899999999
Q ss_pred HCCCCeEEEEecCCCCCCC--CC--CcHHHHHHHHHHHHHHh
Q 004067 738 AARKPYEILIFPDERHMPR--RH--RDRIYMEERIWEFIERT 775 (776)
Q Consensus 738 ~~~~~~~~~~~~~~~H~~~--~~--~~~~~~~~~~~~fl~~~ 775 (776)
+.|.++++..++++.|.+. .+ ....+..+.+.+|+.+.
T Consensus 294 k~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 294 KAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 9999999999999999862 22 35778889999998764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-11 Score=120.84 Aligned_cols=325 Identities=14% Similarity=0.091 Sum_probs=191.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+++||||+++|-.+.+ .+++++|-.+|+..-.....+ .+..++.+.+|||
T Consensus 193 V~~VRysPDG~~Fat~gsD-----gki~iyDGktge~vg~l~~~~--------------------aHkGsIfalsWsP-- 245 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSD-----GKIYIYDGKTGEKVGELEDSD--------------------AHKGSIFALSWSP-- 245 (603)
T ss_pred eeeEEECCCCCeEEEecCC-----ccEEEEcCCCccEEEEecCCC--------------------CccccEEEEEECC--
Confidence 5789999999999977653 369999999888654443211 1235899999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCC--CCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSC--SPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~--~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
|+++++.. .+..+.+||+++.+....+..+.. ......-|. .+..|.....+.|-.+++..+...++..+...
T Consensus 246 -Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-- 321 (603)
T KOG0318|consen 246 -DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-- 321 (603)
T ss_pred -CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheeccccc--
Confidence 99999976 778899999999987755544332 123345565 33333334456777778877775444333321
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
-+.++..+||++.|+..+.+ ..|--|+..
T Consensus 322 ---------------~ITaLtv~~d~~~i~SgsyD------------------------------------G~I~~W~~~ 350 (603)
T KOG0318|consen 322 ---------------SITALTVSPDGKTIYSGSYD------------------------------------GHINSWDSG 350 (603)
T ss_pred ---------------ceeEEEEcCCCCEEEeeccC------------------------------------ceEEEEecC
Confidence 15578899999988876654 457788888
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLD 373 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 373 (776)
+|..-++.- ..+...+..+.-+..+. ++... -+..|.+.++..+....- ... . +...+
T Consensus 351 ~g~~~~~~g-------~~h~nqI~~~~~~~~~~-~~t~g----~Dd~l~~~~~~~~~~t~~---~~~---~----lg~QP 408 (603)
T KOG0318|consen 351 SGTSDRLAG-------KGHTNQIKGMAASESGE-LFTIG----WDDTLRVISLKDNGYTKS---EVV---K----LGSQP 408 (603)
T ss_pred Ccccccccc-------ccccceEEEEeecCCCc-EEEEe----cCCeEEEEecccCccccc---cee---e----cCCCc
Confidence 887665522 34555666666666554 33332 233577776654332110 000 0 00111
Q ss_pred CCccccCC-eEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCC
Q 004067 374 KGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 452 (776)
Q Consensus 374 ~~~~~~~~-~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~ 452 (776)
.+++...+ .++..+-.. +|.++.-.+ +...+.- .+... ..+++|+++.+++-..+ + .+|||.+.- +.
T Consensus 409 ~~lav~~d~~~avv~~~~---~iv~l~~~~-~~~~~~~-~y~~s-~vAv~~~~~~vaVGG~D-g--kvhvysl~g---~~ 476 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACIS---DIVLLQDQT-KVSSIPI-GYESS-AVAVSPDGSEVAVGGQD-G--KVHVYSLSG---DE 476 (603)
T ss_pred eeEEEcCCCCEEEEEecC---cEEEEecCC-cceeecc-ccccc-eEEEcCCCCEEEEeccc-c--eEEEEEecC---Cc
Confidence 11122222 222222222 344443212 1222221 22223 34589999976655433 2 388888872 22
Q ss_pred CccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 453 HTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 453 ~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
...+.+.+.....+..+++||||++||..-.+ .++.++|..+.+.
T Consensus 477 -l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~----rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 477 -LKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS----RKVVLYDVASREV 521 (603)
T ss_pred -ccceeeeecccCCceEEEECCCCcEEEEeccC----CcEEEEEcccCce
Confidence 11233444444456778999999999876433 4688889877653
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.4e-13 Score=133.58 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=124.9
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|.|||+||..++.. .|..++..|.+.||.|+++|+||+|.+..... ....+++....+..+++.
T Consensus 17 ~~p~vvliHG~~~~~~-------~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~-------~~~~~~~~~~~l~~~i~~ 82 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-------CWYKIRCLMENSGYKVTCIDLKSAGIDQSDAD-------SVTTFDEYNKPLIDFLSS 82 (273)
T ss_pred CCCeEEEECCCCCCcC-------cHHHHHHHHHhCCCEEEEecccCCCCCCCCcc-------cCCCHHHHHHHHHHHHHh
Confidence 4589999999765533 35556778888899999999999997632110 112344544444444433
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc------cccccc------c----ccc-C-------
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------YDTFYT------E----KYM-G------- 688 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~------~~~~~~------~----~~~-~------- 688 (776)
.. ..+++.++||||||.+++.++.++|++++++|..++...... +...+. . .+. .
T Consensus 83 l~-~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (273)
T PLN02211 83 LP-ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTS 161 (273)
T ss_pred cC-CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCce
Confidence 21 236899999999999999999999999999998866422000 000000 0 000 0
Q ss_pred ---------------CCCCCcc---chhc---CChh------hhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 689 ---------------LPSEDPV---GYEY---SSVM------HHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 689 ---------------~~~~~~~---~~~~---~~~~------~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
.+..... .... ...+ ....++ +.|+++|.|++|..+|++..+.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~---- 237 (273)
T PLN02211 162 AIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRW---- 237 (273)
T ss_pred eeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhC----
Confidence 0000000 0000 0000 112234 579999999999999998888887765
Q ss_pred CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 741 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
...+++.++ +||.. +.+.++++...+.++..
T Consensus 238 ~~~~~~~l~-~gH~p-~ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 238 PPSQVYELE-SDHSP-FFSTPFLLFGLLIKAAA 268 (273)
T ss_pred CccEEEEEC-CCCCc-cccCHHHHHHHHHHHHH
Confidence 233777886 79987 66778888777776654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-12 Score=137.95 Aligned_cols=281 Identities=14% Similarity=0.146 Sum_probs=184.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce---EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ---ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+....|||||+.++..+.. ..+.+|+..+++. +.+. .+..++....|+
T Consensus 162 v~~~~fs~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~l~------------------------~h~~~v~~~~fs 212 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSD-----GLIRIWKLEGIKSNLLRELS------------------------GHTRGVSDVAFS 212 (456)
T ss_pred eEEEEEcCCCCeEEEccCC-----CcEEEeecccccchhhcccc------------------------ccccceeeeEEC
Confidence 4678999999999877553 3588888866652 2221 123579999999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeC-CCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCC
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDL-SCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~-~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~ 210 (776)
| ||+.|+-. .+..|++||+ +.+.....+..+. ..+....|+|+|+.|+..+. +.+.+|++.+|+.........
T Consensus 213 ~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~-~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 213 P---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS-TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred C---CCcEEEEecCCceEEEeeccCCCeEEEEecCCC-CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence 9 99988865 6788999999 4545543555444 45889999999977777664 469999999987765544332
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
. .+..+++++||..|+-.+.+ ..|.+|
T Consensus 289 ~-----------------~is~~~f~~d~~~l~s~s~d------------------------------------~~i~vw 315 (456)
T KOG0266|consen 289 D-----------------GISGLAFSPDGNLLVSASYD------------------------------------GTIRVW 315 (456)
T ss_pred C-----------------ceEEEEECCCCCEEEEcCCC------------------------------------ccEEEE
Confidence 1 15578899999998876532 458999
Q ss_pred EcCCCceE---EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccCceeecc
Q 004067 291 SAAGGPVS---WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELDSWVNLH 366 (776)
Q Consensus 291 d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~ 366 (776)
|+.++... .+.-. .... .+..+.|||+|++++... .+..+.+||+..+...... .+.... .
T Consensus 316 d~~~~~~~~~~~~~~~------~~~~-~~~~~~fsp~~~~ll~~~----~d~~~~~w~l~~~~~~~~~~~~~~~~----~ 380 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGA------ENSA-PVTSVQFSPNGKYLLSAS----LDRTLKLWDLRSGKSVGTYTGHSNLV----R 380 (456)
T ss_pred ECCCCceeeeecccCC------CCCC-ceeEEEECCCCcEEEEec----CCCeEEEEEccCCcceeeecccCCcc----e
Confidence 99999843 22110 1122 578999999999887765 5667999999877654433 333221 1
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccC-CeEEEEEEeecCCCcEEEEEEccCCCceeeEEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~-~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~ 444 (776)
..|++.. ..++.++++...++ .|+.|++.++.. ..+..+ ...+.. ..+++....+...+.. ......+|.
T Consensus 381 ~~~~~~~----~~~~~~i~sg~~d~--~v~~~~~~s~~~~~~l~~h~~~~~~~-~~~~~~~~~~~s~s~~-~d~~~~~w~ 452 (456)
T KOG0266|consen 381 CIFSPTL----STGGKLIYSGSEDG--SVYVWDSSSGGILQRLEGHSKAAVSD-LSSHPTENLIASSSFE-GDGLIRLWK 452 (456)
T ss_pred eEecccc----cCCCCeEEEEeCCc--eEEEEeCCccchhhhhcCCCCCceec-cccCCCcCeeeecCcC-CCceEEEec
Confidence 1122211 12445666666777 899999886654 445544 333333 3488887755554432 223466665
Q ss_pred EE
Q 004067 445 AK 446 (776)
Q Consensus 445 ~~ 446 (776)
.+
T Consensus 453 ~~ 454 (456)
T KOG0266|consen 453 YD 454 (456)
T ss_pred CC
Confidence 44
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=126.54 Aligned_cols=125 Identities=19% Similarity=0.110 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchh
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 698 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (776)
.+.+.++++.+.++..++.++++++|+|.|+.+++.++.++|..++++++.+|...+..-
T Consensus 80 ~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~-------------------- 139 (207)
T COG0400 80 TEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE-------------------- 139 (207)
T ss_pred HHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc--------------------
Confidence 445666777777777789999999999999999999999999999999999987532100
Q ss_pred cCChhhhhc-cCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 699 YSSVMHHVH-KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 699 ~~~~~~~~~-~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
... .-..|+|++||..|++||...+.++.+.|++.|.+++...++ .||.+ ..+..+.+.+|+.+.
T Consensus 140 ------~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i-----~~e~~~~~~~wl~~~ 205 (207)
T COG0400 140 ------LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEI-----PPEELEAARSWLANT 205 (207)
T ss_pred ------cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcC-----CHHHHHHHHHHHHhc
Confidence 011 123799999999999999999999999999999999999999 79987 334567788898765
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-13 Score=139.09 Aligned_cols=235 Identities=14% Similarity=0.113 Sum_probs=152.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc---------ccccccchhhhHHHHhCCcEEEEECCCCCCCC--
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC---------DSWINTVDMRAQYLRSKGILVWKLDNRGTARR-- 602 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~---------~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~-- 602 (776)
..+|.+..|...+. .+-++||++|+..++.... ..|...+-.--..+....|-|+++|..|.+.+
T Consensus 40 ~~~~~Y~t~G~ln~----~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~ 115 (389)
T PRK06765 40 DVQMGYETYGTLNR----AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKD 115 (389)
T ss_pred CceEEEEeccccCC----CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCC
Confidence 35678888876553 3558999999977654322 22321111112345567899999999987642
Q ss_pred ------chhhhhhh-----hhccCCccHHHHHHHHHHHHHcCCCCCCcEE-EEeechHHHHHHHHHhhCCCceEEEEEcC
Q 004067 603 ------GLKFEASI-----KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGA 670 (776)
Q Consensus 603 ------~~~~~~~~-----~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~~~~~~~~v~~~ 670 (776)
|....+.. ........+.|+.+++..++++..+ .++. ++||||||++++.++.++|++++.+|+++
T Consensus 116 p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia 193 (389)
T PRK06765 116 PNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVI 193 (389)
T ss_pred CCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEe
Confidence 21111110 0123446788999988888876543 5775 99999999999999999999999988875
Q ss_pred CCCC---cc--c----------ccc-----c---------------------------ccccccCC------CC------
Q 004067 671 PVTS---WD--G----------YDT-----F---------------------------YTEKYMGL------PS------ 691 (776)
Q Consensus 671 ~~~~---~~--~----------~~~-----~---------------------------~~~~~~~~------~~------ 691 (776)
.... +. . .+. . +.+++... +.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~ 273 (389)
T PRK06765 194 GNPQNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTL 273 (389)
T ss_pred cCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccch
Confidence 4321 10 0 000 0 00000000 00
Q ss_pred CCccchhc------------------------C-------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 692 EDPVGYEY------------------------S-------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 692 ~~~~~~~~------------------------~-------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
...+.|.. . +....+.++++|+|+|+|..|.++|+..++++.+.+...+
T Consensus 274 ~~~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~ 353 (389)
T PRK06765 274 TSFEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQG 353 (389)
T ss_pred hhHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcC
Confidence 00001100 0 2233466789999999999999999999999988887666
Q ss_pred CCeEEEEecC-CCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 741 KPYEILIFPD-ERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 741 ~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.+++++++++ +||.. ..+..+.+...+.+||++.
T Consensus 354 ~~a~l~~I~s~~GH~~-~le~p~~~~~~I~~FL~~~ 388 (389)
T PRK06765 354 KYAEVYEIESINGHMA-GVFDIHLFEKKIYEFLNRK 388 (389)
T ss_pred CCeEEEEECCCCCcch-hhcCHHHHHHHHHHHHccc
Confidence 6789999985 89976 6678889999999999753
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=128.24 Aligned_cols=187 Identities=18% Similarity=0.116 Sum_probs=123.1
Q ss_pred EEEEEc-CCCcEEEEEEEcCCCCCCCCCCc-eEEEEEcCCCCccccccc-ccccchhhhHHHHhCCcEEEEECCCC-CCC
Q 004067 526 IVQIQA-NDGTVLYGALYKPDESRYGPPPY-KTLISVYGGPCVQLVCDS-WINTVDMRAQYLRSKGILVWKLDNRG-TAR 601 (776)
Q Consensus 526 ~~~~~~-~dg~~l~~~~~~P~~~~~~~~~~-p~vl~~HG~~~~~~~~~~-~~~~~~~~~~~l~~~G~~v~~~d~rg-~g~ 601 (776)
.++|.. .-|.++.+.+|.|+...++ +++ |+|||+||++........ -.......+-..-+.++-|++|.|-- +..
T Consensus 162 a~~f~d~~tgneLkYrly~Pkdy~pd-kky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d 240 (387)
T COG4099 162 AVEFYDESTGNELKYRLYTPKDYAPD-KKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFAD 240 (387)
T ss_pred heEeeccccCceeeEEEecccccCCC-CccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccccccc
Confidence 344433 3578899999999887444 566 999999996544321100 00000001111123345566665421 111
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHH-HHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT 680 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~ 680 (776)
+.. -........+..+. .+.+++.||.+||.++|.|+||+.++.++.++|+.|.++++++|--+-
T Consensus 241 ~e~---------~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~----- 306 (387)
T COG4099 241 SEE---------KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR----- 306 (387)
T ss_pred ccc---------ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-----
Confidence 110 00111334455555 666778899999999999999999999999999999999998875321
Q ss_pred cccccccCCCCCCccchhcCChhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEec
Q 004067 681 FYTEKYMGLPSEDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 749 (776)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 749 (776)
...+..+ +.|+.++|+.+|.++|.+++.-+++.++..+.++.+..|.
T Consensus 307 ----------------------v~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 307 ----------------------VYLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred ----------------------hhhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 1223333 3799999999999999999999999998888777776665
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-10 Score=112.10 Aligned_cols=312 Identities=13% Similarity=0.077 Sum_probs=200.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+-.++.+|+..++| .|.+...-|+|++.+|+. -.++.|++ .+....||.
T Consensus 67 vFavsl~P~~~l~a-----TGGgDD~AflW~~~~ge~~~eltgHKD------------------------SVt~~~Fsh- 116 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVA-----TGGGDDLAFLWDISTGEFAGELTGHKD------------------------SVTCCSFSH- 116 (399)
T ss_pred eEEEEeCCCCceEE-----ecCCCceEEEEEccCCcceeEecCCCC------------------------ceEEEEEcc-
Confidence 35778999888777 344456789999988874 56776655 788999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
||.+||.. .+++|.++..+++..+..+. .+...+..+.|.|-+..|++-+. +.+|.|.+..+...++..+... .
T Consensus 117 --dgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ 192 (399)
T KOG0296|consen 117 --DGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-P 192 (399)
T ss_pred --CceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-C
Confidence 99999987 67899999999998874554 23335888999999988888764 6899999998665566554321 1
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
-. .=.|.||||+|+....+ ..|.+|+++
T Consensus 193 ct----------------~G~f~pdGKr~~tgy~d------------------------------------gti~~Wn~k 220 (399)
T KOG0296|consen 193 CT----------------CGEFIPDGKRILTGYDD------------------------------------GTIIVWNPK 220 (399)
T ss_pred cc----------------cccccCCCceEEEEecC------------------------------------ceEEEEecC
Confidence 11 12388999999876643 458999999
Q ss_pred CCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeec----ccc
Q 004067 294 GGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL----HDC 368 (776)
Q Consensus 294 ~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~----~~~ 368 (776)
++.+.- +... .......+.++.+|..++-. + .....+.++..+|+.........+..... ...
T Consensus 221 tg~p~~~~~~~--------e~~~~~~~~~~~~~~~~~~g-~---~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 221 TGQPLHKITQA--------EGLELPCISLNLAGSTLTKG-N---SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred CCceeEEeccc--------ccCcCCccccccccceeEec-c---CCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 997543 3211 12223345667777544333 2 33446677777777665554321100000 000
Q ss_pred cccCCCCccccCC-eEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 369 FTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 369 ~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.... .+... .+.....-+| .|.+||+.....|.+-.+...|.... |-+ ..+ ++++..++. +.+|....
T Consensus 289 ve~~----~~ss~lpL~A~G~vdG--~i~iyD~a~~~~R~~c~he~~V~~l~-w~~-t~~-l~t~c~~g~--v~~wDaRt 357 (399)
T KOG0296|consen 289 VESI----PSSSKLPLAACGSVDG--TIAIYDLAASTLRHICEHEDGVTKLK-WLN-TDY-LLTACANGK--VRQWDART 357 (399)
T ss_pred hhhc----ccccccchhhcccccc--eEEEEecccchhheeccCCCceEEEE-EcC-cch-heeeccCce--EEeeeccc
Confidence 0000 00011 1333334466 99999999988888888877788776 544 343 555555542 56666653
Q ss_pred CCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEee
Q 004067 448 YPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 448 ~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~ 484 (776)
|. .....+.+. ++..++++||++.++.++.
T Consensus 358 ---G~----l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 358 ---GQ----LKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred ---cc----eEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 43 445555554 5778899999987776643
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=134.86 Aligned_cols=178 Identities=22% Similarity=0.180 Sum_probs=117.7
Q ss_pred EEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc---
Q 004067 557 LISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ--- 632 (776)
Q Consensus 557 vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~--- 632 (776)
||++|||+........ ...++..++ +.|+.|+.+|||-..... ....++|+.++++|+.++
T Consensus 1 v~~~HGGg~~~g~~~~----~~~~~~~la~~~g~~v~~~~Yrl~p~~~-----------~p~~~~D~~~a~~~l~~~~~~ 65 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES----HWPFAARLAAERGFVVVSIDYRLAPEAP-----------FPAALEDVKAAYRWLLKNADK 65 (211)
T ss_dssp EEEE--STTTSCGTTT----HHHHHHHHHHHHTSEEEEEE---TTTSS-----------TTHHHHHHHHHHHHHHHTHHH
T ss_pred CEEECCcccccCChHH----HHHHHHHHHhhccEEEEEeecccccccc-----------ccccccccccceeeecccccc
Confidence 7899998776442221 123355555 489999999999543221 123488999999999987
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCC----CceEEEEEcCCCCCc-ccccccc------c--------------cccc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFP----DVFQCAVSGAPVTSW-DGYDTFY------T--------------EKYM 687 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~----~~~~~~v~~~~~~~~-~~~~~~~------~--------------~~~~ 687 (776)
..+|.++|+|+|+|.||.+++.++.+.. ..++++++.+|..++ ......+ . +.+.
T Consensus 66 ~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PF07859_consen 66 LGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYL 145 (211)
T ss_dssp HTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHH
T ss_pred ccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccc
Confidence 3468999999999999999999997532 247999999998766 2111100 0 0011
Q ss_pred CCCCCCccchhcCChhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 688 GLPSEDPVGYEYSSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+ .........+|+.. ..+ -+|+++++|+.|..+ .++..++++|++.|++++++++++..|.+
T Consensus 146 ~---~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 146 P---GSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp S---TGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred c---cccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 1 00001112344433 123 259999999999865 57899999999999999999999999976
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-10 Score=108.35 Aligned_cols=268 Identities=16% Similarity=0.101 Sum_probs=171.6
Q ss_pred CeeeEEEeecCCCceEEEEe--CCCcEEEEeCCC-----CccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEec
Q 004067 126 GVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSC-----SKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNL 197 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~-----~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l 197 (776)
-+...+..+ ++..+++. .+..+.+|++.. |.+++.++.+.. .+.....|+||+..+-.+ +..+.+||+
T Consensus 17 ~Vt~la~~~---~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 17 WVTALAIKI---KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred eEEEEEeec---CCCceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEEccCCceEEeccccceEEEEEe
Confidence 355566666 66666665 455677777654 444435655443 488899999999755544 456999999
Q ss_pred CCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC
Q 004067 198 LINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277 (776)
Q Consensus 198 ~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (776)
++|+.++.......+ +..+++|||.++|+..+.|
T Consensus 93 ~~g~~t~~f~GH~~d-----------------Vlsva~s~dn~qivSGSrD----------------------------- 126 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKD-----------------VLSVAFSTDNRQIVSGSRD----------------------------- 126 (315)
T ss_pred cCCcEEEEEEecCCc-----------------eEEEEecCCCceeecCCCc-----------------------------
Confidence 999877765544321 5578899999999987654
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe--EEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 278 AGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI--LTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
..|.+|+..++...++.-. .+...+..+.|||... +|+..+ .+..+.+||+++-+.+.-.
T Consensus 127 -------kTiklwnt~g~ck~t~~~~-------~~~~WVscvrfsP~~~~p~Ivs~s----~DktvKvWnl~~~~l~~~~ 188 (315)
T KOG0279|consen 127 -------KTIKLWNTLGVCKYTIHED-------SHREWVSCVRFSPNESNPIIVSAS----WDKTVKVWNLRNCQLRTTF 188 (315)
T ss_pred -------ceeeeeeecccEEEEEecC-------CCcCcEEEEEEcCCCCCcEEEEcc----CCceEEEEccCCcchhhcc
Confidence 3589999999888777431 2267899999999853 555554 5667999999886654433
Q ss_pred EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 356 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
-.... +. ..-.++| ++.+.....++| .+++||++.++.-.-..+...+.+. .|+|+ ++.+..++..
T Consensus 189 ~gh~~-~v-~t~~vSp--------DGslcasGgkdg--~~~LwdL~~~k~lysl~a~~~v~sl-~fspn-rywL~~at~~ 254 (315)
T KOG0279|consen 189 IGHSG-YV-NTVTVSP--------DGSLCASGGKDG--EAMLWDLNEGKNLYSLEAFDIVNSL-CFSPN-RYWLCAATAT 254 (315)
T ss_pred ccccc-cE-EEEEECC--------CCCEEecCCCCc--eEEEEEccCCceeEeccCCCeEeeE-EecCC-ceeEeeccCC
Confidence 22211 11 1112333 445666666777 8999998876653333333445554 49997 4455555554
Q ss_pred CCceeeEEEEEeCCCCCCccccceeecCC--------CC--eEEEEEcCCcCEEEEEeeC
Q 004067 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNG--------KG--KHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~~~~~~~l~~~--------~~--~~~~~~spdg~~l~~~~~~ 485 (776)
+ +.||.+.. +. .+..|... .. ....+||+||..|.-.++.
T Consensus 255 s---IkIwdl~~---~~----~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 255 S---IKIWDLES---KA----VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred c---eEEEeccc---hh----hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 3 78887763 11 12222110 01 2356999999998877654
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.4e-10 Score=112.52 Aligned_cols=288 Identities=14% Similarity=0.151 Sum_probs=169.8
Q ss_pred EcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceE
Q 004067 62 FSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKI 141 (776)
Q Consensus 62 ~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~ 141 (776)
=.|-|..|.|... ..+++.+++..+...+.. ++...+.-..+|| .|.+
T Consensus 26 ~dpkgd~ilY~nG------ksv~ir~i~~~~~~~iYt-----------------------EH~~~vtVAkySP---sG~y 73 (603)
T KOG0318|consen 26 GDPKGDNILYTNG------KSVIIRNIDNPASVDIYT-----------------------EHAHQVTVAKYSP---SGFY 73 (603)
T ss_pred cCCCCCeEEEeCC------CEEEEEECCCccceeeec-----------------------cccceeEEEEeCC---CceE
Confidence 3788999999743 469999999877644443 2234566778999 9999
Q ss_pred EEEe-CCCcEEEEeCCCCccce--ecCCCCCCCccCceeCCCCCEEEEEECC-----cEEEEecCC------CceeEEee
Q 004067 142 IMVP-LPDGIYFQDLSCSKPEL--KLSSSSCSPVIDPHLSSDGTMIAFVRDC-----ELHVLNLLI------NEQRQLTH 207 (776)
Q Consensus 142 l~~~-~~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~SpDg~~la~~~~~-----~l~~~~l~~------g~~~~lt~ 207 (776)
++.. ..++|.+||....+..+ .+... .+++..++|++|+++|+.+.++ .+|.||--+ |..+++..
T Consensus 74 iASGD~sG~vRIWdtt~~~hiLKnef~v~-aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins 152 (603)
T KOG0318|consen 74 IASGDVSGKVRIWDTTQKEHILKNEFQVL-AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINS 152 (603)
T ss_pred EeecCCcCcEEEEeccCcceeeeeeeeec-ccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEee
Confidence 9887 56889999987755432 12222 2358899999999999999874 467776432 22222211
Q ss_pred -------------CCCCC--ceecCCcccce----ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 208 -------------GANGN--TVTHGLAEYIA----QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 208 -------------~~~~~--~~~~~~~~~~~----~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
.++.. .++.|.| |.. +++-.-+..++|||||++.+....|
T Consensus 153 ~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysPDG~~Fat~gsD-------------------- 211 (603)
T KOG0318|consen 153 VDFKPSRPFRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSPDGSRFATAGSD-------------------- 211 (603)
T ss_pred eeccCCCceEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECCCCCeEEEecCC--------------------
Confidence 10000 1111111 110 1111123445555555555544322
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
..+++||=++|+..- +.-. ..+.+.++.++||||++.++.++ .+..+.+||..
T Consensus 212 ----------------gki~iyDGktge~vg~l~~~------~aHkGsIfalsWsPDs~~~~T~S----aDkt~KIWdVs 265 (603)
T KOG0318|consen 212 ----------------GKIYIYDGKTGEKVGELEDS------DAHKGSIFALSWSPDSTQFLTVS----ADKTIKIWDVS 265 (603)
T ss_pred ----------------ccEEEEcCCCccEEEEecCC------CCccccEEEEEECCCCceEEEec----CCceEEEEEee
Confidence 458999999887544 3222 56888999999999999888776 56678999998
Q ss_pred CCceEE-EEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCC
Q 004067 348 TGQRKV-ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEAS 425 (776)
Q Consensus 348 ~g~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg 425 (776)
++.+.. +.-... ++. ... +.-|..+.++-+ .-+| .|-.++++.. .+..+..+...+..+. .++||
T Consensus 266 ~~slv~t~~~~~~---v~d-qqv-----G~lWqkd~lItV-Sl~G--~in~ln~~d~~~~~~i~GHnK~ITaLt-v~~d~ 332 (603)
T KOG0318|consen 266 TNSLVSTWPMGST---VED-QQV-----GCLWQKDHLITV-SLSG--TINYLNPSDPSVLKVISGHNKSITALT-VSPDG 332 (603)
T ss_pred ccceEEEeecCCc---hhc-eEE-----EEEEeCCeEEEE-EcCc--EEEEecccCCChhheecccccceeEEE-EcCCC
Confidence 876432 221111 000 000 012222333333 3456 5555565444 3455666666666654 89999
Q ss_pred cEEEEEEccCCCceeeEEEEEe
Q 004067 426 GQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 426 ~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
++ +|+++.++ +|-..+.
T Consensus 333 ~~-i~SgsyDG----~I~~W~~ 349 (603)
T KOG0318|consen 333 KT-IYSGSYDG----HINSWDS 349 (603)
T ss_pred CE-EEeeccCc----eEEEEec
Confidence 86 45555554 4544544
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-09 Score=114.77 Aligned_cols=234 Identities=9% Similarity=0.060 Sum_probs=142.2
Q ss_pred cceecCCCCCCCCC----eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEE
Q 004067 270 QEDHAYPFAGASNV----KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 270 ~~~~~~~~~g~~~~----~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 345 (776)
...+.|+.+|.... ...+.+||..+|-...- . ..+...+..+.|+.+|+.++..+ -++.+..||
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT-F-------teHts~Vt~v~f~~~g~~llssS----LDGtVRAwD 420 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT-F-------TEHTSGVTAVQFTARGNVLLSSS----LDGTVRAWD 420 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE-e-------ccCCCceEEEEEEecCCEEEEee----cCCeEEeee
Confidence 44445555443321 24589999988865432 1 46777889999999999777665 456789999
Q ss_pred CCCCce-EEEEEeccCceeecccccccCCCCccccCC-eEEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeec
Q 004067 346 IKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVN 422 (776)
Q Consensus 346 ~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s 422 (776)
+....- +..+...-..++.. +-|+. .++++...+ .-.|++|+..+|+.-. |..++..|..+. |+
T Consensus 421 lkRYrNfRTft~P~p~Qfscv-----------avD~sGelV~AG~~d-~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~ 487 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCV-----------AVDPSGELVCAGAQD-SFEIFVWSVQTGQLLDILSGHEGPVSGLS-FS 487 (893)
T ss_pred ecccceeeeecCCCceeeeEE-----------EEcCCCCEEEeeccc-eEEEEEEEeecCeeeehhcCCCCcceeeE-Ec
Confidence 987654 44443222122221 22333 355544443 3589999999887655 555566666654 99
Q ss_pred CCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 423 EASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
++|. ++++++++.+ +.+|.+=-. .| ....|.-...+..++|+|||+.|+..... ++|-.+|...+.+
T Consensus 488 ~~~~-~LaS~SWDkT--VRiW~if~s-~~-----~vEtl~i~sdvl~vsfrPdG~elaVaTld----gqItf~d~~~~~q 554 (893)
T KOG0291|consen 488 PDGS-LLASGSWDKT--VRIWDIFSS-SG-----TVETLEIRSDVLAVSFRPDGKELAVATLD----GQITFFDIKEAVQ 554 (893)
T ss_pred cccC-eEEeccccce--EEEEEeecc-Cc-----eeeeEeeccceeEEEEcCCCCeEEEEEec----ceEEEEEhhhcee
Confidence 9998 5667777765 899988642 22 33444433346788999999999998765 5788899876654
Q ss_pred eEeeccCCCchhhhhccCCCCceEEEEEc-CCCcEEEEEEEcCCC
Q 004067 503 VLPLYEQPLTVPRIKRLQLEPPDIVQIQA-NDGTVLYGALYKPDE 546 (776)
Q Consensus 503 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~~l~~~~~~P~~ 546 (776)
+-.+.... .+..-.. ....++-+. ..+..+....|.+++
T Consensus 555 ~~~Idgrk----D~~~gR~-~~D~~ta~~sa~~K~Ftti~ySaDG 594 (893)
T KOG0291|consen 555 VGSIDGRK----DLSGGRK-ETDRITAENSAKGKTFTTICYSADG 594 (893)
T ss_pred eccccchh----hcccccc-ccceeehhhcccCCceEEEEEcCCC
Confidence 43332211 1111111 122223322 245666777776654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=118.34 Aligned_cols=267 Identities=16% Similarity=0.156 Sum_probs=167.0
Q ss_pred cCCeeeEEEeecCCCceEEEEeC-CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCc
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVPL-PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINE 201 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~ 201 (776)
...+..+.|+| +++.|++.. ++.|++|++.+++....+.... ..+..+.|+|+++.++... ++.|+++++.+++
T Consensus 9 ~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 9 TGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred CCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCC-cceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 35788999999 999999874 8899999999876552443333 2356899999998888887 5689999999864
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.......... .+..+.|+|+++.++....+
T Consensus 85 ~~~~~~~~~~-----------------~i~~~~~~~~~~~~~~~~~~--------------------------------- 114 (289)
T cd00200 85 CVRTLTGHTS-----------------YVSSVAFSPDGRILSSSSRD--------------------------------- 114 (289)
T ss_pred ceEEEeccCC-----------------cEEEEEEcCCCCEEEEecCC---------------------------------
Confidence 3322221110 14468899997755543311
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc-C
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-D 360 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~ 360 (776)
..+.+||+.+++....- ..+...+..+.|+|+++.++... .+..|.+||+.+++......... .
T Consensus 115 ---~~i~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~----~~~~i~i~d~~~~~~~~~~~~~~~~ 179 (289)
T cd00200 115 ---KTIKVWDVETGKCLTTL--------RGHTDWVNSVAFSPDGTFVASSS----QDGTIKLWDLRTGKCVATLTGHTGE 179 (289)
T ss_pred ---CeEEEEECCCcEEEEEe--------ccCCCcEEEEEEcCcCCEEEEEc----CCCcEEEEEccccccceeEecCccc
Confidence 35789999866544331 23455788999999987666554 34569999998766544433221 1
Q ss_pred ceeecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
... +.+.+++ .+++...+| .|.+|+...++. ..+..+...+... .|++++.. ++....++
T Consensus 180 i~~------------~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~~~~~~-~~~~~~~~-- 241 (289)
T cd00200 180 VNS------------VAFSPDGEKLLSSSSDG--TIKLWDLSTGKCLGTLRGHENGVNSV-AFSPDGYL-LASGSEDG-- 241 (289)
T ss_pred cce------------EEECCCcCEEEEecCCC--cEEEEECCCCceecchhhcCCceEEE-EEcCCCcE-EEEEcCCC--
Confidence 110 1222332 344444455 789999876544 3443444445554 48998664 44444333
Q ss_pred eeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEee
Q 004067 439 ESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 439 ~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~ 484 (776)
.+.+|.+.. +. ....+.... .+..+.|+|+++.|+....
T Consensus 242 ~i~i~~~~~---~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 242 TIRVWDLRT---GE----CVQTLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred cEEEEEcCC---ce----eEEEccccCCcEEEEEECCCCCEEEEecC
Confidence 266666652 22 344444333 4678899999987766543
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=125.02 Aligned_cols=157 Identities=24% Similarity=0.339 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc-cc---cccc------cc---cc
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW-DG---YDTF------YT---EK 685 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~-~~---~~~~------~~---~~ 685 (776)
++-+..+++||.+++.++.++|+|+|.|.||-+|+.+|+.+| .++++|+.+|..-. .. +... +. ..
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 345789999999999999999999999999999999999998 57999988875321 10 0000 00 00
Q ss_pred c-cCCCCCCc--cch------hcCChhhhhccCCCcEEEEecCCCCccChH-HHHHHHHHHHHCCCC--eEEEEecCCCC
Q 004067 686 Y-MGLPSEDP--VGY------EYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAARKP--YEILIFPDERH 753 (776)
Q Consensus 686 ~-~~~~~~~~--~~~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~~--~~~~~~~~~~H 753 (776)
. ...+.... ..+ ......-.+.++++|+|++.|++|...|.. .+..+.++|++++.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 0 00000000 000 011112246788999999999999999865 455677888888754 88999999999
Q ss_pred CCCCC---------------------------CcHHHHHHHHHHHHHHhC
Q 004067 754 MPRRH---------------------------RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 754 ~~~~~---------------------------~~~~~~~~~~~~fl~~~l 776 (776)
.+..+ ...++.|..+++||+++|
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L 211 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHL 211 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 86321 135789999999999987
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=116.03 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=125.5
Q ss_pred hhhhHHHHhCCcEEEEECC-CCCCCCc--h--hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHH
Q 004067 578 DMRAQYLRSKGILVWKLDN-RGTARRG--L--KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLS 652 (776)
Q Consensus 578 ~~~~~~l~~~G~~v~~~d~-rg~g~~~--~--~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a 652 (776)
+..+..++.+||.|+.||+ ||-..+. + .........-...-..|+...+++|+.+. +..+|+++|++|||-++
T Consensus 57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~v 134 (242)
T KOG3043|consen 57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVV 134 (242)
T ss_pred HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEE
Confidence 3457888899999999997 4411111 1 11111222222334778999999999776 56899999999999999
Q ss_pred HHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHH
Q 004067 653 AITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL 732 (776)
Q Consensus 653 ~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~ 732 (776)
..+....+ .|.+++...|..- + ...+.++++|+|++.|+.|..+|+.....+
T Consensus 135 v~~~~~~~-~f~a~v~~hps~~--------------------------d-~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ 186 (242)
T KOG3043|consen 135 VTLSAKDP-EFDAGVSFHPSFV--------------------------D-SADIANVKAPILFLFAELDEDVPPKDVKAW 186 (242)
T ss_pred EEeeccch-hheeeeEecCCcC--------------------------C-hhHHhcCCCCEEEEeecccccCCHHHHHHH
Confidence 88888877 6888888766421 1 245778889999999999999999998888
Q ss_pred HHHHHHCCC-CeEEEEecCCCCCCCC-------C---CcHHHHHHHHHHHHHHhC
Q 004067 733 INALVAARK-PYEILIFPDERHMPRR-------H---RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 733 ~~~l~~~~~-~~~~~~~~~~~H~~~~-------~---~~~~~~~~~~~~fl~~~l 776 (776)
-+.+.+... ..++.+|++.+|.+.. + ...++.+..+..||.++|
T Consensus 187 ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 187 EEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 888876543 3579999999999842 1 235788999999999875
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=115.49 Aligned_cols=212 Identities=15% Similarity=0.166 Sum_probs=138.9
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+.++.+.+..+-+...... ..-+++++||.-.... . .....++..+++.||.++-+|++|.|+|
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~tg-------s~e~vvlcHGfrS~Kn---~--~~~~~vA~~~e~~gis~fRfDF~GnGeS 76 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHETG-------STEIVVLCHGFRSHKN---A--IIMKNVAKALEKEGISAFRFDFSGNGES 76 (269)
T ss_pred eeeEEEeccCCCchhhcceeccC-------CceEEEEeeccccccc---h--HHHHHHHHHHHhcCceEEEEEecCCCCc
Confidence 44556666666655555444322 2358999999644322 0 1123357788999999999999999999
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc--
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-- 680 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~-- 680 (776)
...|.-. .+..+++|+..+++++.... ..--+|+|||-||.+++.++.++++ +.-++..++-.+.+....
T Consensus 77 ~gsf~~G----n~~~eadDL~sV~q~~s~~n---r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eR 148 (269)
T KOG4667|consen 77 EGSFYYG----NYNTEADDLHSVIQYFSNSN---RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINER 148 (269)
T ss_pred CCccccC----cccchHHHHHHHHHHhccCc---eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhh
Confidence 7665422 23346789999999997642 1224699999999999999999888 566777777655433221
Q ss_pred ---ccccc-----ccCCCC---CCccch--------hcCChhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHHC
Q 004067 681 ---FYTEK-----YMGLPS---EDPVGY--------EYSSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAA 739 (776)
Q Consensus 681 ---~~~~~-----~~~~~~---~~~~~~--------~~~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 739 (776)
.+.++ ++..+. .....+ ...+......+| ++|+|-+||..|.+||.+.+.++++.+.
T Consensus 149 lg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~-- 226 (269)
T KOG4667|consen 149 LGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIP-- 226 (269)
T ss_pred hcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhcc--
Confidence 11111 111111 001111 111222233445 4899999999999999999999999873
Q ss_pred CCCeEEEEecCCCCCCCCC
Q 004067 740 RKPYEILIFPDERHMPRRH 758 (776)
Q Consensus 740 ~~~~~~~~~~~~~H~~~~~ 758 (776)
..++.++||++|.+...
T Consensus 227 --nH~L~iIEgADHnyt~~ 243 (269)
T KOG4667|consen 227 --NHKLEIIEGADHNYTGH 243 (269)
T ss_pred --CCceEEecCCCcCccch
Confidence 36899999999998543
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=157.80 Aligned_cols=211 Identities=15% Similarity=0.131 Sum_probs=133.2
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|+|||+||.+++.. .|..++..|.+ +|.|+++|+||+|.+................++++...+..++++
T Consensus 1370 ~~~~vVllHG~~~s~~-------~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~ 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE-------DWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH 1441 (1655)
T ss_pred CCCeEEEECCCCCCHH-------HHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH
Confidence 3478999999877654 23444566654 699999999999987532110000001122355566555555544
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-------------cc--------cccccccCC--
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-------------DT--------FYTEKYMGL-- 689 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-------------~~--------~~~~~~~~~-- 689 (776)
. ..+++.++||||||.+++.++.++|++++++++.++...+... .. .+...+...
T Consensus 1442 l--~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 1519 (1655)
T PLN02980 1442 I--TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGEL 1519 (1655)
T ss_pred h--CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHH
Confidence 2 3468999999999999999999999999999887654321100 00 000000000
Q ss_pred ---CCC---------------Ccc----chh------cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC-
Q 004067 690 ---PSE---------------DPV----GYE------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR- 740 (776)
Q Consensus 690 ---~~~---------------~~~----~~~------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~- 740 (776)
... ... .+. ..+....+.++++|+|+++|++|..++ ..+.++.+.+....
T Consensus 1520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~ 1598 (1655)
T PLN02980 1520 WKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKE 1598 (1655)
T ss_pred hhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccc
Confidence 000 000 000 011123467888999999999999774 55666666654320
Q ss_pred -------CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 741 -------KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 741 -------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..++++++|++||.. +.++++.+.+.+.+||.+.
T Consensus 1599 ~~~~~~~~~a~lvvI~~aGH~~-~lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1599 SGNDKGKEIIEIVEIPNCGHAV-HLENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred ccccccccceEEEEECCCCCch-HHHCHHHHHHHHHHHHHhc
Confidence 136899999999987 6688899999999999763
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-12 Score=121.94 Aligned_cols=265 Identities=12% Similarity=0.114 Sum_probs=182.5
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCC--CCEEEEEE-CCcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSD--GTMIAFVR-DCELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~la~~~-~~~l~~~~l~~g 200 (776)
.++....||. |++.|+.. ..|.+.+|+.........+.. ....+..+.|+|. +..||-.+ ++-+-+|++++.
T Consensus 176 rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 176 RPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred CcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 4567788999 99999976 678899999988876634444 3446889999997 55676665 455667776653
Q ss_pred c-eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 E-QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~-~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
. ..+|+.. ..|+..++|.|+|+.|+..+.|.+
T Consensus 252 ~~l~~l~gH------------------~~RVs~VafHPsG~~L~TasfD~t----------------------------- 284 (459)
T KOG0272|consen 252 TPLQDLEGH------------------LARVSRVAFHPSGKFLGTASFDST----------------------------- 284 (459)
T ss_pred cchhhhhcc------------------hhhheeeeecCCCceeeecccccc-----------------------------
Confidence 2 2223221 234678999999999999887643
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE- 358 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~- 358 (776)
-.+||+.+++.-.+. .++...+.+++|-|||..++... -+.-=.+||+.+|....+....
T Consensus 285 -------WRlWD~~tk~ElL~Q--------EGHs~~v~~iaf~~DGSL~~tGG----lD~~~RvWDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 285 -------WRLWDLETKSELLLQ--------EGHSKGVFSIAFQPDGSLAATGG----LDSLGRVWDLRTGRCIMFLAGHI 345 (459)
T ss_pred -------hhhcccccchhhHhh--------cccccccceeEecCCCceeeccC----ccchhheeecccCcEEEEecccc
Confidence 378999988765442 46777899999999998655433 3333467999999987766543
Q ss_pred cCceeecccccccCCCCccccCCeE-EEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGF-IWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
.+.+.. +|+++++ +.+...++ ...+||+.... ..++..+...|..+- ++|++...+++++.++
T Consensus 346 k~I~~V------------~fsPNGy~lATgs~Dn--t~kVWDLR~r~~ly~ipAH~nlVS~Vk-~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 346 KEILSV------------AFSPNGYHLATGSSDN--TCKVWDLRMRSELYTIPAHSNLVSQVK-YSPQEGYFLVTASYDN 410 (459)
T ss_pred cceeeE------------eECCCceEEeecCCCC--cEEEeeecccccceecccccchhhheE-ecccCCeEEEEcccCc
Confidence 333322 3444444 33333444 88888987654 455555555555554 9997777888888887
Q ss_pred CceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEe
Q 004067 437 PLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFH 483 (776)
Q Consensus 437 ~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~ 483 (776)
. ..||.-. ++. .++.|..+.+ +.++..|+|+..++...
T Consensus 411 t--~kiWs~~---~~~----~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 411 T--VKIWSTR---TWS----PLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred c--eeeecCC---Ccc----cchhhcCCccceEEEEeccCCceEEEec
Confidence 6 7888766 443 5667777665 67899999998877654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-10 Score=107.71 Aligned_cols=276 Identities=15% Similarity=0.137 Sum_probs=185.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+....||+|+++|+-.+.+ ..|.+||.-+.+.......+ ..=+-.-+|+|
T Consensus 58 i~~~~ws~Dsr~ivSaSqD-----GklIvWDs~TtnK~haipl~-----------------------s~WVMtCA~sP-- 107 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQD-----GKLIVWDSFTTNKVHAIPLP-----------------------SSWVMTCAYSP-- 107 (343)
T ss_pred eeeeEecCCcCeEEeeccC-----CeEEEEEcccccceeEEecC-----------------------ceeEEEEEECC--
Confidence 6789999999999966553 35999999887654443211 11255678999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccc------eecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPE------LKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~------~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~ 209 (776)
.|+.++-. .++..-++++.+.+.. +.|..+. ..+..-.|-+|++.|--..+...-+||+++|+..+...+.
T Consensus 108 -Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 108 -SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT-GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred -CCCeEEecCcCceeEEEecccccccccceeeeeecCcc-ceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC
Confidence 99999987 5666566677654211 1343333 3477788988887665555566899999999988776544
Q ss_pred CCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
.++ +.++..+| |++..+...-| ...+
T Consensus 186 ~gD-----------------V~slsl~p~~~ntFvSg~cD------------------------------------~~ak 212 (343)
T KOG0286|consen 186 TGD-----------------VMSLSLSPSDGNTFVSGGCD------------------------------------KSAK 212 (343)
T ss_pred ccc-----------------EEEEecCCCCCCeEEecccc------------------------------------ccee
Confidence 321 45788999 88876654433 2358
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccc
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDC 368 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 368 (776)
+||+..+..++. +.+++..|..+.|-|+|.-++..+ ++....+||+.....-.++++.....-...-.
T Consensus 213 lWD~R~~~c~qt--------F~ghesDINsv~ffP~G~afatGS----DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 213 LWDVRSGQCVQT--------FEGHESDINSVRFFPSGDAFATGS----DDATCRLYDLRADQELAVYSHDSIICGITSVA 280 (343)
T ss_pred eeeccCcceeEe--------ecccccccceEEEccCCCeeeecC----CCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence 999998876665 267888899999999997554443 67778899998776666665433211111112
Q ss_pred cccCCCCccccCCeEEEEeccCCceEEEEEe-CCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 369 FTPLDKGVTKYSGGFIWASEKTGFRHLYLHD-INGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~-~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
|+- .++++|..-.+. +..+|| +.+...-.|..++..+.-+. .+|||- .+.+.+++.. ++||
T Consensus 281 FS~--------SGRlLfagy~d~--~c~vWDtlk~e~vg~L~GHeNRvScl~-~s~DG~-av~TgSWDs~--lriW 342 (343)
T KOG0286|consen 281 FSK--------SGRLLFAGYDDF--TCNVWDTLKGERVGVLAGHENRVSCLG-VSPDGM-AVATGSWDST--LRIW 342 (343)
T ss_pred Ecc--------cccEEEeeecCC--ceeEeeccccceEEEeeccCCeeEEEE-ECCCCc-EEEecchhHh--eeec
Confidence 222 456777764444 788999 55555667888877777664 899997 4566666654 5666
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-10 Score=106.69 Aligned_cols=281 Identities=13% Similarity=0.104 Sum_probs=180.7
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+.++.||+||+.+.-.+.+ ..|.++|...|+....+.+++ .|+..+.|..
T Consensus 15 ~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skk-----------------------yG~~~~~Fth 66 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKK-----------------------YGVDLACFTH 66 (311)
T ss_pred CceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeeccc-----------------------ccccEEEEec
Confidence 445899999999999875543 369999999998766665544 4677677766
Q ss_pred cCCCceEEEEe---CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCC
Q 004067 135 TSSKKKIIMVP---LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 135 ~~~dg~~l~~~---~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~ 210 (776)
....++.. .+.+|..+++.+.+-. +.-.+....+..+..||-+...+-.+. ..|.+||+...+.+-+.....
T Consensus 67 ---~~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~ 142 (311)
T KOG1446|consen 67 ---HSNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG 142 (311)
T ss_pred ---CCceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC
Confidence 55556655 4678999999998887 666666667899999998877666654 479999998766554433322
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
....+|.|.|=.+|... ++ ..|.+|
T Consensus 143 -------------------~pi~AfDp~GLifA~~~--~~----------------------------------~~IkLy 167 (311)
T KOG1446|consen 143 -------------------RPIAAFDPEGLIFALAN--GS----------------------------------ELIKLY 167 (311)
T ss_pred -------------------CcceeECCCCcEEEEec--CC----------------------------------CeEEEE
Confidence 22567999995444332 21 135555
Q ss_pred EcCC---CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE-EEeccCceeecc
Q 004067 291 SAAG---GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI-LVEELDSWVNLH 366 (776)
Q Consensus 291 d~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~ 366 (776)
|+.. |-...+.+. .........+.||||||.|+... ....++++|+=+|....- .......-....
T Consensus 168 D~Rs~dkgPF~tf~i~------~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSIT------DNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred EecccCCCCceeEccC------CCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 5542 222233221 12234566799999999887776 455689999988886543 333333222344
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC-eEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~-~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
..|.| ++.+++.+..+| +|.+|++++++..-.+.+. ......+.|+| ++..|.+... +..+|..
T Consensus 238 a~ftP--------ds~Fvl~gs~dg--~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP--~~~mf~sa~s---~l~fw~p 302 (311)
T KOG1446|consen 238 ATFTP--------DSKFVLSGSDDG--TIHVWNLETGKKVAVLRGPNGGPVSCVRFNP--RYAMFVSASS---NLVFWLP 302 (311)
T ss_pred EEECC--------CCcEEEEecCCC--cEEEEEcCCCcEeeEecCCCCCCccccccCC--ceeeeeecCc---eEEEEec
Confidence 55666 556888888888 8889998887655444442 22223334666 4445554432 2556655
Q ss_pred Ee
Q 004067 446 KL 447 (776)
Q Consensus 446 ~~ 447 (776)
+.
T Consensus 303 ~~ 304 (311)
T KOG1446|consen 303 DE 304 (311)
T ss_pred cc
Confidence 53
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=105.58 Aligned_cols=268 Identities=11% Similarity=0.083 Sum_probs=172.1
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEE-eeCCCCCceecCCccccee
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQL-THGANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~l-t~~~~~~~~~~~~~~~~~~ 224 (776)
.|-.|..|.+.+|.....+...+ ..+.....+||++.||.....+|.++|+.++....+ +.++..
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~d-sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~------------- 83 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPD-SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT------------- 83 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCc-cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccC-------------
Confidence 56679999999999884555544 458899999999999999999999999998876433 333221
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEccc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQC 304 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~ 304 (776)
.-+.++.|.-||+.++..+.| ..+.+||+..-...++
T Consensus 84 ---kNVtaVgF~~dgrWMyTgseD------------------------------------gt~kIWdlR~~~~qR~---- 120 (311)
T KOG0315|consen 84 ---KNVTAVGFQCDGRWMYTGSED------------------------------------GTVKIWDLRSLSCQRN---- 120 (311)
T ss_pred ---CceEEEEEeecCeEEEecCCC------------------------------------ceEEEEeccCcccchh----
Confidence 014467799999988765533 3478898877554444
Q ss_pred CCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 305 GGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 305 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
..+...+..+...|+-..|+... ..+.|++||+..... ..+..+.+. .+.. . .+.+ +++.
T Consensus 121 -----~~~~spVn~vvlhpnQteLis~d----qsg~irvWDl~~~~c~~~liPe~~~-~i~s---l-----~v~~-dgsm 181 (311)
T KOG0315|consen 121 -----YQHNSPVNTVVLHPNQTELISGD----QSGNIRVWDLGENSCTHELIPEDDT-SIQS---L-----TVMP-DGSM 181 (311)
T ss_pred -----ccCCCCcceEEecCCcceEEeec----CCCcEEEEEccCCccccccCCCCCc-ceee---E-----EEcC-CCcE
Confidence 44556677888888755555443 345699999977643 333333221 1100 0 0122 3334
Q ss_pred EEEeccCCceEEEEEeCCCce----eecccc---CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccc
Q 004067 384 IWASEKTGFRHLYLHDINGTC----LGPITE---GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 456 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~----~~~lt~---~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~ 456 (776)
+...+..| +.|+|++-++. ..++++ +......-. +|||+|+|+..+++ ....||..+- - ..
T Consensus 182 l~a~nnkG--~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~-lSPd~k~lat~ssd---ktv~iwn~~~---~---~k 249 (311)
T KOG0315|consen 182 LAAANNKG--NCYVWRLLNHQTASELEPVHKFQAHNGHILRCL-LSPDVKYLATCSSD---KTVKIWNTDD---F---FK 249 (311)
T ss_pred EEEecCCc--cEEEEEccCCCccccceEhhheecccceEEEEE-ECCCCcEEEeecCC---ceEEEEecCC---c---ee
Confidence 44455556 89999965542 223332 333344444 89999987766654 2378888763 1 01
Q ss_pred cceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEe
Q 004067 457 APVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 457 ~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (776)
.-..|+++.+ +.+.+||.||++|+...+. . ....|+...++.+++
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd-~---~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSD-H---TARLWDLSAGKEVRQ 295 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCC-C---ceeecccccCceeee
Confidence 3355666654 5688999999998877544 2 356667878876554
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-10 Score=121.40 Aligned_cols=261 Identities=14% Similarity=0.077 Sum_probs=164.7
Q ss_pred cCceeCCCCCEEEEEEC--C----cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 173 IDPHLSSDGTMIAFVRD--C----ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 173 ~~~~~SpDg~~la~~~~--~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
....+||||++|||..+ + .|+++|+++|+...-...... ...+.|++||+.++|.+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~------------------~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK------------------FSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE------------------SEEEEECTTSSEEEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc------------------cceEEEeCCCCEEEEEE
Confidence 45788999999999864 2 499999999955332211100 11378999999999998
Q ss_pred ecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE--EEEcccCCCCCCCCcceEEEEEeccC
Q 004067 247 VDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS--WMDLQCGGTDQNYDEEYLARVNWMHG 324 (776)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~SpD 324 (776)
.+...... +..-..+|+.+.+.++... .+-.. .........+..|+|
T Consensus 189 ~~~~~~~~-------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~------~~~~~~~~~~~~s~d 237 (414)
T PF02897_consen 189 FDEDQRTS-------------------------DSGYPRQVYRHKLGTPQSEDELVFEE------PDEPFWFVSVSRSKD 237 (414)
T ss_dssp CSTTTSS--------------------------CCGCCEEEEEEETTS-GGG-EEEEC-------TTCTTSEEEEEE-TT
T ss_pred eCcccccc-------------------------cCCCCcEEEEEECCCChHhCeeEEee------cCCCcEEEEEEecCc
Confidence 76542210 0011267899998887643 33211 122223667899999
Q ss_pred CeEEEEEEeecCceEEEEEEECCCC-----ceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc-CCceEEEEE
Q 004067 325 NILTAQVLNRSQTKLKVLKFDIKTG-----QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLH 398 (776)
Q Consensus 325 g~~l~~~~~~~~~~~~l~~~d~~~g-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~ 398 (776)
|++|++.+........+|++|+..+ ..+.+........... ...++.+++.++. .....|+.+
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v-----------~~~~~~~yi~Tn~~a~~~~l~~~ 306 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV-----------DHHGDRLYILTNDDAPNGRLVAV 306 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE-----------EEETTEEEEEE-TT-TT-EEEEE
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE-----------EccCCEEEEeeCCCCCCcEEEEe
Confidence 9988877776655589999999875 6777776544322111 1225667777765 335699999
Q ss_pred eCCCcee---e-ccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCC-CCCccccceeecCC--CCeEEEE
Q 004067 399 DINGTCL---G-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD-WNHTLEAPVKLTNG--KGKHVAV 471 (776)
Q Consensus 399 ~~~g~~~---~-~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~-g~~~~~~~~~l~~~--~~~~~~~ 471 (776)
+++.... . .|..+...+ .+..++..+++|++....++. .+|+.+++ . +. ....+... ..+..+.
T Consensus 307 ~l~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~Lvl~~~~~~~--~~l~v~~~--~~~~----~~~~~~~p~~g~v~~~~ 377 (414)
T PF02897_consen 307 DLADPSPAEWWTVLIPEDEDV-SLEDVSLFKDYLVLSYRENGS--SRLRVYDL--DDGK----ESREIPLPEAGSVSGVS 377 (414)
T ss_dssp ETTSTSGGGEEEEEE--SSSE-EEEEEEEETTEEEEEEEETTE--EEEEEEET--T-TE----EEEEEESSSSSEEEEEE
T ss_pred cccccccccceeEEcCCCCce-eEEEEEEECCEEEEEEEECCc--cEEEEEEC--CCCc----EEeeecCCcceEEeccC
Confidence 9876542 2 343333211 122345567778888776653 67888887 4 33 33333332 2345667
Q ss_pred EcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 472 LDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 472 ~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
..+++..+.+..++..+|+.+|.+|+.+++.
T Consensus 378 ~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 378 GDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp S-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 8899999999999999999999999999984
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=105.73 Aligned_cols=250 Identities=12% Similarity=0.046 Sum_probs=166.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.++||++.||-.. ..+|.++|+.++++..+.+.+. +..++.++.|--
T Consensus 43 VNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~---------------------h~kNVtaVgF~~-- 93 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEG---------------------HTKNVTAVGFQC-- 93 (311)
T ss_pred eeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEec---------------------cCCceEEEEEee--
Confidence 47889999999998432 3579999999998755543222 125788999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCc-eeEEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINE-QRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~-~~~lt~~~~~~~ 213 (776)
||++++.. .|+.+.+||+..-... ++-.... .+..+...|+-..|+... +++|++||+.... ..++..+...
T Consensus 94 -dgrWMyTgseDgt~kIWdlR~~~~q-R~~~~~s-pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~-- 168 (311)
T KOG0315|consen 94 -DGRWMYTGSEDGTVKIWDLRSLSCQ-RNYQHNS-PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT-- 168 (311)
T ss_pred -cCeEEEecCCCceEEEEeccCcccc-hhccCCC-CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc--
Confidence 99999986 7889999999886665 4444443 477888888776655543 4689999998774 3455443321
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+.++...|||+.++-+. ++ ...|+|++-
T Consensus 169 ---------------~i~sl~v~~dgsml~a~n-nk-----------------------------------G~cyvW~l~ 197 (311)
T KOG0315|consen 169 ---------------SIQSLTVMPDGSMLAAAN-NK-----------------------------------GNCYVWRLL 197 (311)
T ss_pred ---------------ceeeEEEcCCCcEEEEec-CC-----------------------------------ccEEEEEcc
Confidence 145788999999887543 22 347888887
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC-ceE-EEEEeccCceeeccccccc
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-QRK-VILVEELDSWVNLHDCFTP 371 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g-~~~-~l~~~~~~~~~~~~~~~~~ 371 (776)
++.....-. +...+..+.+++....+|||+|+|+..+ .+.++++|+.++- +.. .+..+ .+|+-+ .+|+.
T Consensus 198 ~~~~~s~l~--P~~k~~ah~~~il~C~lSPd~k~lat~s----sdktv~iwn~~~~~kle~~l~gh--~rWvWd-c~FS~ 268 (311)
T KOG0315|consen 198 NHQTASELE--PVHKFQAHNGHILRCLLSPDVKYLATCS----SDKTVKIWNTDDFFKLELVLTGH--QRWVWD-CAFSA 268 (311)
T ss_pred CCCccccce--EhhheecccceEEEEEECCCCcEEEeec----CCceEEEEecCCceeeEEEeecC--CceEEe-eeecc
Confidence 654221100 1112456788999999999999988776 4567889988775 222 23333 245422 23433
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCCce-eecccc
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITE 410 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~ 410 (776)
++.++++.+.++ ...+|++..++ .++...
T Consensus 269 --------dg~YlvTassd~--~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 269 --------DGEYLVTASSDH--TARLWDLSAGKEVRQYQG 298 (311)
T ss_pred --------CccEEEecCCCC--ceeecccccCceeeecCC
Confidence 455777777776 55566766554 444443
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-12 Score=143.82 Aligned_cols=216 Identities=13% Similarity=0.022 Sum_probs=124.5
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 531 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 531 ~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
..+|..++++.+.+. ..|+|||+||.+++.. .|..+...| ..||.|+++|+||+|.|.......
T Consensus 9 ~~~g~~l~~~~~g~~-------~~~~ivllHG~~~~~~-------~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~~~~- 72 (582)
T PRK05855 9 SSDGVRLAVYEWGDP-------DRPTVVLVHGYPDNHE-------VWDGVAPLL-ADRFRVVAYDVRGAGRSSAPKRTA- 72 (582)
T ss_pred eeCCEEEEEEEcCCC-------CCCeEEEEcCCCchHH-------HHHHHHHHh-hcceEEEEecCCCCCCCCCCCccc-
Confidence 348888988876532 2378999999876543 234456667 568999999999999886422111
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCC-CCCcc-c-----c---
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAP-VTSWD-G-----Y--- 678 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~-~~~~~-~-----~--- 678 (776)
.....++.+.+..+++.... ..++.|+||||||.+++.++... +..+...+..++ ..+.. . .
T Consensus 73 -----~~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (582)
T PRK05855 73 -----AYTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRP 146 (582)
T ss_pred -----ccCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhccccc
Confidence 12244444444444433211 23499999999999998777652 333333332221 11000 0 0
Q ss_pred ---------ccccc----------------------c---cccC----CCCCC-------------ccchhcC----Chh
Q 004067 679 ---------DTFYT----------------------E---KYMG----LPSED-------------PVGYEYS----SVM 703 (776)
Q Consensus 679 ---------~~~~~----------------------~---~~~~----~~~~~-------------~~~~~~~----~~~ 703 (776)
..... . .... .+... ...+... ...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (582)
T PRK05855 147 TPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSR 226 (582)
T ss_pred chhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhcc
Confidence 00000 0 0000 00000 0000000 000
Q ss_pred hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 704 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 704 ~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.....+++|+|+++|.+|..+++.....+.+.+ ...++++++ +||.. ..+.++.+.+.+.+|+.+
T Consensus 227 ~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~----~~~~~~~~~-~gH~~-~~e~p~~~~~~i~~fl~~ 291 (582)
T PRK05855 227 PRERYTDVPVQLIVPTGDPYVRPALYDDLSRWV----PRLWRREIK-AGHWL-PMSHPQVLAAAVAEFVDA 291 (582)
T ss_pred CccCCccCceEEEEeCCCcccCHHHhccccccC----CcceEEEcc-CCCcc-hhhChhHHHHHHHHHHHh
Confidence 112347899999999999999988777665543 345677776 58977 566788889999999875
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-10 Score=111.91 Aligned_cols=265 Identities=13% Similarity=0.154 Sum_probs=178.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.++|+-||..||+-+.. ..+.+|+..|+....+..|+. +|.+..|+.
T Consensus 238 VT~L~Wn~~G~~LatG~~~-----G~~riw~~~G~l~~tl~~Hkg------------------------PI~slKWnk-- 286 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSED-----GEARIWNKDGNLISTLGQHKG------------------------PIFSLKWNK-- 286 (524)
T ss_pred cceEEecCCCCeEEEeecC-----cEEEEEecCchhhhhhhccCC------------------------ceEEEEEcC--
Confidence 5899999999999976653 469999999888777766544 899999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCce-eEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQ-RQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~-~~lt~~~~~~~~ 214 (776)
+|.+|+.. .++.+.+||..+|+..+.++... .....+.|--+..-..-..+..|+++.+..... ..+.-...
T Consensus 287 -~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s-~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g---- 360 (524)
T KOG0273|consen 287 -KGTYILSGGVDGTTILWDAHTGTVKQQFEFHS-APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG---- 360 (524)
T ss_pred -CCCEEEeccCCccEEEEeccCceEEEeeeecc-CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC----
Confidence 99999976 78899999999998884444433 224556776554433333345577777654332 22221111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.+.++.|.|-|+.|+..+.| ..|.+|....
T Consensus 361 --------------~V~alk~n~tg~LLaS~SdD------------------------------------~TlkiWs~~~ 390 (524)
T KOG0273|consen 361 --------------EVNALKWNPTGSLLASCSDD------------------------------------GTLKIWSMGQ 390 (524)
T ss_pred --------------ceEEEEECCCCceEEEecCC------------------------------------CeeEeeecCC
Confidence 15688999999988877754 3467777543
Q ss_pred Cc-eEEEEcccCCCCCCCCcceEEEEEeccCCe---------EEEEEEeecCceEEEEEEECCCCceE-EEEEeccCcee
Q 004067 295 GP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNI---------LTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWV 363 (776)
Q Consensus 295 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~---------~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~ 363 (776)
.. ...+ ..+...|+.+.|||+|. .++.++ .+..+.+||++.|... .+..+..+.+.
T Consensus 391 ~~~~~~l---------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas----~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 391 SNSVHDL---------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS----FDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred Ccchhhh---------hhhccceeeEeecCCCCccCCCcCCceEEEee----cCCeEEEEEccCCceeEeeccCCCceEE
Confidence 32 2222 34556688899999874 222222 4667999999998864 45577777665
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.. |+| ++.++...+.+| .|.+|+...++..+-..++..+..+. |+.+|.+|.......
T Consensus 458 va---fS~--------~g~ylAsGs~dg--~V~iws~~~~~l~~s~~~~~~Ifel~-Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 458 VA---FSP--------NGRYLASGSLDG--CVHIWSTKTGKLVKSYQGTGGIFELC-WNAAGDKLGACASDG 515 (524)
T ss_pred EE---ecC--------CCcEEEecCCCC--eeEeccccchheeEeecCCCeEEEEE-EcCCCCEEEEEecCC
Confidence 43 554 334555666788 77778877776655555555555554 999998877776543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-09 Score=109.65 Aligned_cols=327 Identities=12% Similarity=0.077 Sum_probs=200.3
Q ss_pred CCeeeEEEeecCCCceEEEEeC--CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCc
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL--PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINE 201 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~--~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~ 201 (776)
..+...+|+- -|.+|+|.- -++|-+|+..+..-+.... +...++..+++||||+.||-..+ +.+-+||...|-
T Consensus 308 ~~I~t~~~N~---tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 308 QKILTVSFNS---TGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred ceeeEEEecc---cCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 3577889988 899999984 4589999887765542222 22335788999999999998765 579999998886
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.. +|+.... .+ +.++.|+.+|+.|+..+.|
T Consensus 384 C~-vTFteHt----s~------------Vt~v~f~~~g~~llssSLD--------------------------------- 413 (893)
T KOG0291|consen 384 CF-VTFTEHT----SG------------VTAVQFTARGNVLLSSSLD--------------------------------- 413 (893)
T ss_pred EE-EEeccCC----Cc------------eEEEEEEecCCEEEEeecC---------------------------------
Confidence 53 2332211 11 5578899999999887765
Q ss_pred CCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-Eecc
Q 004067 282 NVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEEL 359 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~ 359 (776)
..+..||++..+. ++++.+ .......++-.|.|..+... ..+..+|++|+..+|+...+. .|++
T Consensus 414 ---GtVRAwDlkRYrNfRTft~P--------~p~QfscvavD~sGelV~AG---~~d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 414 ---GTVRAWDLKRYRNFRTFTSP--------EPIQFSCVAVDPSGELVCAG---AQDSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred ---CeEEeeeecccceeeeecCC--------CceeeeEEEEcCCCCEEEee---ccceEEEEEEEeecCeeeehhcCCCC
Confidence 3467888876654 334332 22344566777778754433 346789999999999976554 4454
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc--eeeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT--CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~--~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
+... -.|+| .+..+++..-+. ++.+|+.=+. ....|.- ...+..+. |+|||+.|++..-..
T Consensus 480 PVs~---l~f~~--------~~~~LaS~SWDk--TVRiW~if~s~~~vEtl~i-~sdvl~vs-frPdG~elaVaTldg-- 542 (893)
T KOG0291|consen 480 PVSG---LSFSP--------DGSLLASGSWDK--TVRIWDIFSSSGTVETLEI-RSDVLAVS-FRPDGKELAVATLDG-- 542 (893)
T ss_pred ccee---eEEcc--------ccCeEEeccccc--eEEEEEeeccCceeeeEee-ccceeEEE-EcCCCCeEEEEEecc--
Confidence 4221 01333 233566555555 7888884332 3333321 23345554 999999998887653
Q ss_pred ceeeEEEEEeCC-----CCCC----ccccceeecCC-----CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCcee
Q 004067 438 LESHLYCAKLYP-----DWNH----TLEAPVKLTNG-----KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 503 (776)
Q Consensus 438 ~~~~l~~~~~~~-----~g~~----~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~ 503 (776)
++.+|...... +|.. ...+.-++|.. ....++.+|+||+.++-.-.+ ..|.+++..++-.+
T Consensus 543 -qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s----n~iCiY~v~~~vll 617 (893)
T KOG0291|consen 543 -QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES----NSICIYDVPEGVLL 617 (893)
T ss_pred -eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc----ccEEEEECchhhee
Confidence 36666654310 0100 00112223322 124567999999988766544 45999999888765
Q ss_pred Ee--eccCCCch---hhhhccCCCCceEEEEEcCCCcEEEEEE
Q 004067 504 LP--LYEQPLTV---PRIKRLQLEPPDIVQIQANDGTVLYGAL 541 (776)
Q Consensus 504 ~~--l~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 541 (776)
+. +..|.... +.++...|.+.-.+.+...+...+.+.+
T Consensus 618 kkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i 660 (893)
T KOG0291|consen 618 KKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRI 660 (893)
T ss_pred eeEEeccccchhHHHHHhccccccccCCccccccccccccccc
Confidence 54 44444332 3556666666655555544444444433
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-13 Score=117.59 Aligned_cols=217 Identities=15% Similarity=0.146 Sum_probs=136.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
.|.++.+.-+.- ++ -.|+++.|..++.. ..|.+.. .+.+...-+.+++.|.||.|.|..+-......
T Consensus 29 ng~ql~y~~~G~-------G~-~~iLlipGalGs~~--tDf~pql---~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ 95 (277)
T KOG2984|consen 29 NGTQLGYCKYGH-------GP-NYILLIPGALGSYK--TDFPPQL---LSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQ 95 (277)
T ss_pred cCceeeeeecCC-------CC-ceeEeccccccccc--ccCCHHH---HhcCCCCceEEEEECCCCCCCCCCCcccchHH
Confidence 466676665432 12 36778888766643 3343321 23333445999999999999885432221111
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc-----cc-----ccc
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-----YD-----TFY 682 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-----~~-----~~~ 682 (776)
....|...+++.+.+. +..++.|+|+|-||..|+.+|+++++.+..+++..+..-... +. ..|
T Consensus 96 ----ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kW 168 (277)
T KOG2984|consen 96 ----FFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKW 168 (277)
T ss_pred ----HHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhh
Confidence 1256777777777665 557999999999999999999999998877776544321111 00 001
Q ss_pred cccccCCCCC-------Cccchh----------cC----ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 683 TEKYMGLPSE-------DPVGYE----------YS----SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 683 ~~~~~~~~~~-------~~~~~~----------~~----~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
.++. ..|.+ ....|. .. -.-..++++++|+||+||.+|+.++..++--+.. + ..
T Consensus 169 s~r~-R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~-~---~~ 243 (277)
T KOG2984|consen 169 SARG-RQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPV-L---KS 243 (277)
T ss_pred hhhh-cchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhh-h---cc
Confidence 1100 00000 000010 00 0112468899999999999999998776644333 2 35
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..++.++|.++|.+ +....+++...+.+||++.
T Consensus 244 ~a~~~~~peGkHn~-hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 244 LAKVEIHPEGKHNF-HLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred cceEEEccCCCcce-eeechHHHHHHHHHHHhcc
Confidence 67899999999998 6677899999999999863
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-09 Score=102.53 Aligned_cols=275 Identities=13% Similarity=0.148 Sum_probs=173.2
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+|+-++|+||+++|+-.-+.+..+.-.-|.+|.+.|....+..... .+.+-...+.++
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~---------------------~g~~p~yvsvd~- 98 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL---------------------PGSPPCYVSVDE- 98 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc---------------------CCCCCeEEEECC-
Confidence 3578899999999987776544444577888888788877664222 112335567888
Q ss_pred CCCceEEEEe--CCCcEEEEeCCC-Cccce---ecCCCC--------CCCccCceeCCCCCEEEEEEC--CcEEEEecCC
Q 004067 136 SSKKKIIMVP--LPDGIYFQDLSC-SKPEL---KLSSSS--------CSPVIDPHLSSDGTMIAFVRD--CELHVLNLLI 199 (776)
Q Consensus 136 ~~dg~~l~~~--~~~~l~~~d~~~-~~~~~---~l~~~~--------~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~ 199 (776)
||++++.+ ..+.|-+..+.. |.... .+.... ........++|||+.|+...- ..|++++++.
T Consensus 99 --~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 99 --DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred --CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence 99988876 334455555432 33320 111110 112566789999999888764 4799999998
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
|.....+...- ..| .-.+.+.|+|+||..+....
T Consensus 177 g~L~~~~~~~v----~~G----------~GPRHi~FHpn~k~aY~v~E-------------------------------- 210 (346)
T COG2706 177 GKLTPADPAEV----KPG----------AGPRHIVFHPNGKYAYLVNE-------------------------------- 210 (346)
T ss_pred Ccccccccccc----CCC----------CCcceEEEcCCCcEEEEEec--------------------------------
Confidence 86554332110 001 01457889999995444432
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
.+.++.++-++...|+...+..-.-.|..+........+..||||++| +++||+.+.-.++.+|.++|....+.....
T Consensus 211 -L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL-YasNRg~dsI~~f~V~~~~g~L~~~~~~~t 288 (346)
T COG2706 211 -LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL-YASNRGHDSIAVFSVDPDGGKLELVGITPT 288 (346)
T ss_pred -cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE-EEecCCCCeEEEEEEcCCCCEEEEEEEecc
Confidence 223466677777778887776544445445666778889999999865 566899888889999999998776644332
Q ss_pred CceeecccccccCCCCccccCCeE-EEEeccCCceEEEEEeCCCceeecccc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGF-IWASEKTGFRHLYLHDINGTCLGPITE 410 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~g~~~l~~~~~~g~~~~~lt~ 410 (776)
.+-. |...-+.. ++++ +.+.+++..-.+|..|.++|....+..
T Consensus 289 eg~~-------PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 289 EGQF-------PRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCcC-------CccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 2110 11111122 3344 444555666789999998887776654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-10 Score=110.57 Aligned_cols=282 Identities=9% Similarity=0.035 Sum_probs=189.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~ 202 (776)
..+..+.|+- ||..|++. .++.+-+|+..|+... .|..+.+ ++..+.|+.+|.+|+-.. ++.+.+||..+|+.
T Consensus 236 kdVT~L~Wn~---~G~~LatG~~~G~~riw~~~G~l~~-tl~~Hkg-PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 236 KDVTSLDWNN---DGTLLATGSEDGEARIWNKDGNLIS-TLGQHKG-PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CCcceEEecC---CCCeEEEeecCcEEEEEecCchhhh-hhhccCC-ceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 4688999999 99999997 7889999999998887 7766655 589999999999998875 46799999999998
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+|........ + ..+-|-.+.+ ++....
T Consensus 311 ~q~f~~~s~~----~-------------lDVdW~~~~~-F~ts~t----------------------------------- 337 (524)
T KOG0273|consen 311 KQQFEFHSAP----A-------------LDVDWQSNDE-FATSST----------------------------------- 337 (524)
T ss_pred EEeeeeccCC----c-------------cceEEecCce-EeecCC-----------------------------------
Confidence 8775543210 0 1233544333 221111
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC-ceEEEEEeccCc
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-QRKVILVEELDS 361 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~ 361 (776)
...|+|+-+....+..- +.++.+.+..+.|.|-|+.|+..+ .+.+|.+|....+ ....+..+....
T Consensus 338 -d~~i~V~kv~~~~P~~t--------~~GH~g~V~alk~n~tg~LLaS~S----dD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 338 -DGCIHVCKVGEDRPVKT--------FIGHHGEVNALKWNPTGSLLASCS----DDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred -CceEEEEEecCCCccee--------eecccCceEEEEECCCCceEEEec----CCCeeEeeecCCCcchhhhhhhccce
Confidence 12355555544333221 146788899999999999888776 5677889986543 344554444332
Q ss_pred eeecccccccCCCCccc-cCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 362 WVNLHDCFTPLDKGVTK-YSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
+.. .|+|.++.... ..+..+.++..++ .+.+||...+ .+..++.+...|.++. |||+|++++.-+... -
T Consensus 405 ~t~---~wsp~g~v~~n~~~~~~l~sas~ds--tV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~ylAsGs~dg---~ 475 (524)
T KOG0273|consen 405 YTI---KWSPTGPVTSNPNMNLMLASASFDS--TVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGRYLASGSLDG---C 475 (524)
T ss_pred eeE---eecCCCCccCCCcCCceEEEeecCC--eEEEEEccCCceeEeeccCCCceEEEE-ecCCCcEEEecCCCC---e
Confidence 221 13343332111 1223444444555 8999997655 4667888888888876 999999766655443 3
Q ss_pred eeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
++||.... |+ ..+.....+++..+.|+.+|.+|...++. ..+.++|+
T Consensus 476 V~iws~~~---~~----l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd----~~vcvldl 522 (524)
T KOG0273|consen 476 VHIWSTKT---GK----LVKSYQGTGGIFELCWNAAGDKLGACASD----GSVCVLDL 522 (524)
T ss_pred eEeccccc---hh----eeEeecCCCeEEEEEEcCCCCEEEEEecC----CCceEEEe
Confidence 89999986 32 56677777778899999999888776654 23666664
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-10 Score=123.44 Aligned_cols=273 Identities=15% Similarity=0.133 Sum_probs=175.9
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCc--cceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecC-C
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSK--PELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLL-I 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~-~ 199 (776)
..+....||| ||+.++.. .+..+.+|+..+.+ ....+... ...+....|||||+.++-.++ ..|++|++. .
T Consensus 160 ~sv~~~~fs~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 160 PSVTCVDFSP---DGRALAAASSDGLIRIWKLEGIKSNLLRELSGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred CceEEEEEcC---CCCeEEEccCCCcEEEeecccccchhhcccccc-ccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 4677889999 99998887 67788899987766 33234222 334888999999998887765 479999994 4
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+...+..... ..+ +..+.|+|+|+.|+..+.|
T Consensus 236 ~~~~~~l~gH---------~~~--------v~~~~f~p~g~~i~Sgs~D------------------------------- 267 (456)
T KOG0266|consen 236 GRNLKTLKGH---------STY--------VTSVAFSPDGNLLVSGSDD------------------------------- 267 (456)
T ss_pred CeEEEEecCC---------CCc--------eEEEEecCCCCEEEEecCC-------------------------------
Confidence 3443332222 122 3478899999877776654
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE---EEEE
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK---VILV 356 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~---~l~~ 356 (776)
..+++||+.+++.... +..+...+..++|++||+.|+..+ .+..|.+||+.++... .+..
T Consensus 268 -----~tvriWd~~~~~~~~~--------l~~hs~~is~~~f~~d~~~l~s~s----~d~~i~vwd~~~~~~~~~~~~~~ 330 (456)
T KOG0266|consen 268 -----GTVRIWDVRTGECVRK--------LKGHSDGISGLAFSPDGNLLVSAS----YDGTIRVWDLETGSKLCLKLLSG 330 (456)
T ss_pred -----CcEEEEeccCCeEEEe--------eeccCCceEEEEECCCCCEEEEcC----CCccEEEEECCCCceeeeecccC
Confidence 3489999999876654 256777899999999999777664 4677999999999943 3333
Q ss_pred eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEE---EEEEeecCCCcEEEEEE
Q 004067 357 EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMV---EQIVGVNEASGQVYFTG 432 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~---~~~~~~s~dg~~i~~~~ 432 (776)
..... ......|+| ++.++++...++ .+.+|++..+. ....+.+...+ ..+. .+++|+.+ +.+
T Consensus 331 ~~~~~-~~~~~~fsp--------~~~~ll~~~~d~--~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i-~sg 397 (456)
T KOG0266|consen 331 AENSA-PVTSVQFSP--------NGKYLLSASLDR--TLKLWDLRSGKSVGTYTGHSNLVRCIFSPT-LSTGGKLI-YSG 397 (456)
T ss_pred CCCCC-ceeEEEECC--------CCcEEEEecCCC--eEEEEEccCCcceeeecccCCcceeEeccc-ccCCCCeE-EEE
Confidence 32221 111122333 233555555565 88999988554 44444443321 1222 36677754 444
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCC-C-CeEEEEEcCCcCEEEEEeeCCCC
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-K-GKHVAVLDHNMRNFVDFHDSLDS 488 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~-~~~~~~~spdg~~l~~~~~~~~~ 488 (776)
..+.. +.+|.+.. +. .+.++..+ . .+..+.++|..+.++......+.
T Consensus 398 ~~d~~--v~~~~~~s---~~----~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 398 SEDGS--VYVWDSSS---GG----ILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG 446 (456)
T ss_pred eCCce--EEEEeCCc---cc----hhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence 44433 56666652 22 45566655 2 34567888988888877655554
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=127.29 Aligned_cols=216 Identities=21% Similarity=0.292 Sum_probs=147.0
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhH---HHHhCCcEEEEECCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ---YLRSKGILVWKLDNRGT 599 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~---~l~~~G~~v~~~d~rg~ 599 (776)
....+.++..||++|...+|.|++. ++.|+++..+=.|....... +.... .... .++.+||+|+..|.||.
T Consensus 18 ~~~~v~V~MRDGvrL~~dIy~Pa~~----g~~Pvll~~~~~Py~k~~~~-~~~~~-~~~p~~~~~aa~GYavV~qDvRG~ 91 (563)
T COG2936 18 IERDVMVPMRDGVRLAADIYRPAGA----GPLPVLLSRTRLPYRKRNGT-FGPQL-SALPQPAWFAAQGYAVVNQDVRGR 91 (563)
T ss_pred eeeeeeEEecCCeEEEEEEEccCCC----CCCceeEEeecccccccccc-Ccchh-hcccccceeecCceEEEEeccccc
Confidence 4566888899999999999999885 68899999884333322100 11111 1122 68899999999999999
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-- 677 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-- 677 (776)
++|...+..... .+.+|-.+.|+|+.++++ ...+|+++|.||+|+..+++|+..|.-.++++...+..+...
T Consensus 92 ~~SeG~~~~~~~-----~E~~Dg~D~I~Wia~QpW-sNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~ 165 (563)
T COG2936 92 GGSEGVFDPESS-----REAEDGYDTIEWLAKQPW-SNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDD 165 (563)
T ss_pred ccCCcccceecc-----ccccchhHHHHHHHhCCc-cCCeeeeecccHHHHHHHHHHhcCCchheeeccccccccccccc
Confidence 999776543221 368899999999999988 558999999999999999999998888899998887765210
Q ss_pred --ccc--------ccc---------------------------ccc--------cCCCCC---------CccchhcCChh
Q 004067 678 --YDT--------FYT---------------------------EKY--------MGLPSE---------DPVGYEYSSVM 703 (776)
Q Consensus 678 --~~~--------~~~---------------------------~~~--------~~~~~~---------~~~~~~~~~~~ 703 (776)
+.. .|. +.+ ...|+. ....|...+..
T Consensus 166 ~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~~ 245 (563)
T COG2936 166 AFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDRV 245 (563)
T ss_pred cccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCcc
Confidence 000 000 000 001111 00134444555
Q ss_pred hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 704 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 704 ~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
....++++|+|++.|-.|... ..+..++..+... +..+++-|- .|..
T Consensus 246 ~d~~~i~vP~L~i~gW~D~~l--~~~~~~~~~~~~r--~~~lvvgPw-~H~~ 292 (563)
T COG2936 246 ADLSKIKVPALVIGGWSDGYL--HTAIKLFAFLRSR--PVKLVVGPW-THGG 292 (563)
T ss_pred cccccCCCcEEEEcccccccc--cchHHHhhhcccC--CceeEEccc-ccCC
Confidence 667888999999999999743 4556777776544 345555553 5543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-10 Score=106.73 Aligned_cols=285 Identities=14% Similarity=0.094 Sum_probs=179.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++...||-||.+|| .|.-...|.++...+|..+.....+ ...+.-+.|.|
T Consensus 109 Vt~~~FshdgtlLA-----TGdmsG~v~v~~~stg~~~~~~~~e-----------------------~~dieWl~WHp-- 158 (399)
T KOG0296|consen 109 VTCCSFSHDGTLLA-----TGDMSGKVLVFKVSTGGEQWKLDQE-----------------------VEDIEWLKWHP-- 158 (399)
T ss_pred eEEEEEccCceEEE-----ecCCCccEEEEEcccCceEEEeecc-----------------------cCceEEEEecc--
Confidence 68999999999999 3433457999999998876655311 24577889999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee-EEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR-QLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~-~lt~~~~~~~ 213 (776)
-+..|++. .++.+|.|.+..+... ++-.+...+...-.|+||||+++-..+ +-|.+|++++|+.. .++....
T Consensus 159 -~a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--- 233 (399)
T KOG0296|consen 159 -RAHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--- 233 (399)
T ss_pred -cccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc---
Confidence 88888776 7889999999885444 454555556778899999999988765 57999999999653 2322111
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.. ..-+..+.+|..+.-.. .+ ...++.+..
T Consensus 234 ----~~----------~~~~~~~~~~~~~~~g~-~e-----------------------------------~~~~~~~~~ 263 (399)
T KOG0296|consen 234 ----LE----------LPCISLNLAGSTLTKGN-SE-----------------------------------GVACGVNNG 263 (399)
T ss_pred ----Cc----------CCccccccccceeEecc-CC-----------------------------------ccEEEEccc
Confidence 00 11233555565443221 11 224555555
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLD 373 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 373 (776)
+|++.....+..+-........+..+.++|-...+=.. ..+.-+..|.+||+.+...|.+.+++.+.-.
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~-A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~---------- 332 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA-ACGSVDGTIAIYDLAASTLRHICEHEDGVTK---------- 332 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhcccccccchh-hcccccceEEEEecccchhheeccCCCceEE----------
Confidence 55554443321110112233334445555543321111 1223567899999999999999888766111
Q ss_pred CCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 374 KGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 374 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
+-|.+...++++-.+| .|+.||..+|. ....+.+...+..+. ++|+++. +++.+.++. ..++.+
T Consensus 333 --l~w~~t~~l~t~c~~g--~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~~-vvT~s~D~~--a~VF~v 397 (399)
T KOG0296|consen 333 --LKWLNTDYLLTACANG--KVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKRL-VVTVSDDNT--ALVFEV 397 (399)
T ss_pred --EEEcCcchheeeccCc--eEEeeeccccceEEEEecCchheeEEE-EcCCCcE-EEEecCCCe--EEEEec
Confidence 1233434667777778 99999977665 556777787788776 8999885 444444432 455544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-09 Score=104.88 Aligned_cols=285 Identities=15% Similarity=0.149 Sum_probs=161.1
Q ss_pred CceEEEEeC------CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----------CcEEEEecCCC
Q 004067 138 KKKIIMVPL------PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----------CELHVLNLLIN 200 (776)
Q Consensus 138 dg~~l~~~~------~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----------~~l~~~~l~~g 200 (776)
|++++++.. .++|+++|.++.+....+..+.. ... .+||||+.|+.... +.|-++|++++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~--P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFL--PNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCC--Cce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 455555542 26899999999887645554442 333 49999998877654 35999999998
Q ss_pred cee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 EQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+.. .|...+. .+...+.. ...++.|||||.|+....+.
T Consensus 88 ~~~~~i~~p~~-p~~~~~~~----------~~~~~ls~dgk~l~V~n~~p------------------------------ 126 (352)
T TIGR02658 88 LPIADIELPEG-PRFLVGTY----------PWMTSLTPDNKTLLFYQFSP------------------------------ 126 (352)
T ss_pred cEEeEEccCCC-chhhccCc----------cceEEECCCCCEEEEecCCC------------------------------
Confidence 764 3433221 01111111 23678999999887654321
Q ss_pred CCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEE------EEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 280 ASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLAR------VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~------~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
...+-++|+.+++... +..+ ....++. ...+.||+.+.+ .+|.+ |+..
T Consensus 127 ----~~~V~VvD~~~~kvv~ei~vp--------~~~~vy~t~e~~~~~~~~Dg~~~~v------------~~d~~-g~~~ 181 (352)
T TIGR02658 127 ----SPAVGVVDLEGKAFVRMMDVP--------DCYHIFPTANDTFFMHCRDGSLAKV------------GYGTK-GNPK 181 (352)
T ss_pred ----CCEEEEEECCCCcEEEEEeCC--------CCcEEEEecCCccEEEeecCceEEE------------EecCC-CceE
Confidence 1457899999988654 4331 1111111 122233332222 22221 2211
Q ss_pred EEEEeccCceee-cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec------cccC----CeEE--EEEE
Q 004067 353 VILVEELDSWVN-LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP------ITEG----DWMV--EQIV 419 (776)
Q Consensus 353 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~------lt~~----~~~~--~~~~ 419 (776)
.... ..+.. ..+.|.-. .+...+++.+|.+.+ | .|+.+|+.+.+... ++.. .|.. .+..
T Consensus 182 -~~~~--~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G--~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 182 -IKPT--EVFHPEDEYLINHP--AYSNKSGRLVWPTYT-G--KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred -Eeee--eeecCCccccccCC--ceEcCCCcEEEEecC-C--eEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 1000 00000 01111111 113335677888866 5 89999976654222 2211 1211 1346
Q ss_pred eecCCCcEEEEEEccCC-----CceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEE
Q 004067 420 GVNEASGQVYFTGTLDG-----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILL 494 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~-----~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~ 494 (776)
.+++||+++|+...... ....++|.+++.+ ++ ...++..+.....+.+||||+.++|+.+... ..|.+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~k----vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s--~~VsV 326 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GK----RLRKIELGHEIDSINVSQDAKPLLYALSTGD--KTLYI 326 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-Ce----EEEEEeCCCceeeEEECCCCCeEEEEeCCCC--CcEEE
Confidence 69999999999653211 1225899999842 32 5666766667889999999996777665433 35999
Q ss_pred EEcCCCceeEee
Q 004067 495 CSLQDGSLVLPL 506 (776)
Q Consensus 495 ~~~~~~~~~~~l 506 (776)
+|..+++.++.+
T Consensus 327 iD~~t~k~i~~i 338 (352)
T TIGR02658 327 FDAETGKELSSV 338 (352)
T ss_pred EECcCCeEEeee
Confidence 999998877765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-09 Score=100.76 Aligned_cols=267 Identities=11% Similarity=0.037 Sum_probs=165.7
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCC--
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLIN-- 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g-- 200 (776)
..|..+.|++ |+++|+.. +++.|.+||.-+...+-.++ -+..-+..-+|||.|+.+|--.-++ --++++.+.
T Consensus 56 ~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 56 NKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 4688999999 99999976 89999999998877662333 3333478899999999999887544 344455432
Q ss_pred --ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 201 --EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 201 --~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
..+ +.. .+.|+..| ..-..|-+|+. |+..+.|
T Consensus 132 ~g~~~-v~r------~l~gHtgy--------lScC~f~dD~~-ilT~SGD------------------------------ 165 (343)
T KOG0286|consen 132 EGNVR-VSR------ELAGHTGY--------LSCCRFLDDNH-ILTGSGD------------------------------ 165 (343)
T ss_pred cccce-eee------eecCccce--------eEEEEEcCCCc-eEecCCC------------------------------
Confidence 111 110 11112211 22455666554 6655432
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
....+||+++|+.... +.++.+.+..++++| |++.++... -+..-++||+..+...+-+..
T Consensus 166 ------~TCalWDie~g~~~~~--------f~GH~gDV~slsl~p~~~ntFvSg~----cD~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 166 ------MTCALWDIETGQQTQV--------FHGHTGDVMSLSLSPSDGNTFVSGG----CDKSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred ------ceEEEEEcccceEEEE--------ecCCcccEEEEecCCCCCCeEEecc----cccceeeeeccCcceeEeecc
Confidence 5578999999987665 257888899999999 888666544 455678999988876665543
Q ss_pred c-cCceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCce-eeccccC--CeEEEEEEeecCCCcEEEEEE
Q 004067 358 E-LDSWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTC-LGPITEG--DWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 358 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~-~~~lt~~--~~~~~~~~~~s~dg~~i~~~~ 432 (776)
. ...-. -.|-| ++..|.+ ..++ ...++|+.... ....... ...+.++. ||..|+.++.-
T Consensus 228 hesDINs---v~ffP---------~G~afatGSDD~--tcRlyDlRaD~~~a~ys~~~~~~gitSv~-FS~SGRlLfag- 291 (343)
T KOG0286|consen 228 HESDINS---VRFFP---------SGDAFATGSDDA--TCRLYDLRADQELAVYSHDSIICGITSVA-FSKSGRLLFAG- 291 (343)
T ss_pred cccccce---EEEcc---------CCCeeeecCCCc--eeEEEeecCCcEEeeeccCcccCCceeEE-EcccccEEEee-
Confidence 3 22111 12333 2333433 3455 45555655433 3333322 23455654 99999955444
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEee
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~ 484 (776)
..+. ...+|..- .|. ....|..+.+ +.-+.++|||..++..+-
T Consensus 292 y~d~--~c~vWDtl---k~e----~vg~L~GHeNRvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 292 YDDF--TCNVWDTL---KGE----RVGVLAGHENRVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred ecCC--ceeEeecc---ccc----eEEEeeccCCeeEEEEECCCCcEEEecch
Confidence 3332 37888775 233 4556666654 667899999987765543
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=121.89 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=125.8
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC----cEEEEECCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG----ILVWKLDNR 597 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G----~~v~~~d~r 597 (776)
..+.+.+.+. -|....+++|.|+.+. ++++|+|+++||...... . ........|.+.| .+++++|..
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~--~~~~PvlyllDG~~w~~~----~--~~~~~ld~li~~g~i~P~ivV~id~~ 250 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA--PEERPLAILLDGQFWAES----M--PVWPALDSLTHRGQLPPAVYLLIDAI 250 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC--CCCCCEEEEEECHHhhhc----C--CHHHHHHHHHHcCCCCceEEEEECCC
Confidence 4566677664 4677999999998763 468999999999543321 0 1122344555555 457888863
Q ss_pred CCCCCchhhhhhhhhccCCccHH-HH-HHHHHHHHHcC--CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 598 GTARRGLKFEASIKHNCGRIDAE-DQ-LTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 598 g~g~~~~~~~~~~~~~~~~~~~~-D~-~~~i~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.......... . ...+. .+ .+.+-++.++. ..|+++.+|+|+||||+.|++++.++|++|.++++.+|..
T Consensus 251 ~~~~R~~el~--~-----~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 251 DTTHRSQELP--C-----NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred CcccccccCC--c-----hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 2211111110 0 00111 11 23334444442 2477899999999999999999999999999999999875
Q ss_pred CcccccccccccccCCCCCCccchhcCChhhh--hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCC
Q 004067 674 SWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 751 (776)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 751 (776)
.|.... . .....+.. .+.. ...-...+++-+|..|... ...+.++.+.|+++|.++++.+++|
T Consensus 324 ww~~~~--------~---~~~~~l~~--~l~~~~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G- 388 (411)
T PRK10439 324 WWPHRG--------G---QQEGVLLE--QLKAGEVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG- 388 (411)
T ss_pred ecCCcc--------C---CchhHHHH--HHHhcccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-
Confidence 332110 0 00000100 0001 1111235888899988544 4677999999999999999999997
Q ss_pred CCCC
Q 004067 752 RHMP 755 (776)
Q Consensus 752 ~H~~ 755 (776)
||..
T Consensus 389 GHd~ 392 (411)
T PRK10439 389 GHDA 392 (411)
T ss_pred CcCH
Confidence 7964
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=129.21 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=125.6
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
.+..+.|.|.... ...+.||++||......+.+. . ....++.+|+++||.|+++|+||+|.+...+. +.
T Consensus 173 ~~eLi~Y~P~t~~---~~~~PlLiVp~~i~k~yilDL-~-p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~------~d 241 (532)
T TIGR01838 173 LFQLIQYEPTTET---VHKTPLLIVPPWINKYYILDL-R-PQNSLVRWLVEQGHTVFVISWRNPDASQADKT------FD 241 (532)
T ss_pred cEEEEEeCCCCCc---CCCCcEEEECcccccceeeec-c-cchHHHHHHHHCCcEEEEEECCCCCcccccCC------hh
Confidence 3566666776531 234678889995433222111 0 11246889999999999999999987654321 11
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHH----HHHhhC-CCceEEEEEcCCCCCccccc-----------
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSA----ITLARF-PDVFQCAVSGAPVTSWDGYD----------- 679 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~----~~a~~~-~~~~~~~v~~~~~~~~~~~~----------- 679 (776)
.+..+++.++++.+++.. +.+++.++||||||.++. .+++.+ ++++++++.++...++....
T Consensus 242 dY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~l~~f~~~~~~ 319 (532)
T TIGR01838 242 DYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGELGVFVDEEIV 319 (532)
T ss_pred hhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcchhhhhcCchhH
Confidence 233456888888888654 457899999999999852 234444 77888888776655532100
Q ss_pred -----------------------------cc---cccccc-CCC--------CC-----Cc---------cchhcC----
Q 004067 680 -----------------------------TF---YTEKYM-GLP--------SE-----DP---------VGYEYS---- 700 (776)
Q Consensus 680 -----------------------------~~---~~~~~~-~~~--------~~-----~~---------~~~~~~---- 700 (776)
.. +...|+ +.. |. .+ ..|.++
T Consensus 320 ~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~ 399 (532)
T TIGR01838 320 AGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTT 399 (532)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHHHHHhcCCCcC
Confidence 00 000011 110 00 00 111111
Q ss_pred ------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 701 ------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 701 ------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
.....+.+|++|+|+++|.+|.++|+..+..+.+.+ + ..+.++++++||..
T Consensus 400 G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i---~-~~~~~vL~~sGHi~ 456 (532)
T TIGR01838 400 GGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALL---G-GPKTFVLGESGHIA 456 (532)
T ss_pred CeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHC---C-CCEEEEECCCCCch
Confidence 122356788899999999999999999888777665 2 45677889999985
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-10 Score=109.60 Aligned_cols=278 Identities=11% Similarity=0.065 Sum_probs=168.1
Q ss_pred CCeeeEEEeecCCCceEEEEeC-CCc--EEEEeCCCC-ccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL-PDG--IYFQDLSCS-KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~-~~~--l~~~d~~~~-~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~ 199 (776)
..+--..||+ +|++||.+. +.. ||.+..++. +...++.... ..+..+.||||.++|+-... ..+++||+++
T Consensus 225 dEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~-~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 225 DEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS-QPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred CcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeeeeeeeccc-CceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 4566778899 999999873 333 555544444 1111333333 34888999999999887764 4699999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
|..+.+-..+.+ .+ +...+|-|||..++..+.+
T Consensus 301 gd~~~~y~~~~~------~S----------~~sc~W~pDg~~~V~Gs~d------------------------------- 333 (519)
T KOG0293|consen 301 GDLRHLYPSGLG------FS----------VSSCAWCPDGFRFVTGSPD------------------------------- 333 (519)
T ss_pred chhhhhcccCcC------CC----------cceeEEccCCceeEecCCC-------------------------------
Confidence 998776544311 11 4467899999998765533
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
.++..||+++.......- .....+.+++.++||++++.+. .+..|.+++.++...+.+.++..
T Consensus 334 -----r~i~~wdlDgn~~~~W~g--------vr~~~v~dlait~Dgk~vl~v~----~d~~i~l~~~e~~~dr~lise~~ 396 (519)
T KOG0293|consen 334 -----RTIIMWDLDGNILGNWEG--------VRDPKVHDLAITYDGKYVLLVT----VDKKIRLYNREARVDRGLISEEQ 396 (519)
T ss_pred -----CcEEEecCCcchhhcccc--------cccceeEEEEEcCCCcEEEEEe----cccceeeechhhhhhhccccccC
Confidence 347888888876543311 1123578899999999877766 56679999998877664444333
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccC---CeEEEEEEeecCCCcEEEEEEccC
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEG---DWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~---~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
+.-. |+- + .+++++.++-.+. .+.+||++..+ .++...+ .+.+.+ .|.-....++.+++++
T Consensus 397 ~its-----~~i-----S-~d~k~~LvnL~~q--ei~LWDl~e~~lv~kY~Ghkq~~fiIrS--CFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 397 PITS-----FSI-----S-KDGKLALVNLQDQ--EIHLWDLEENKLVRKYFGHKQGHFIIRS--CFGGGNDKFIASGSED 461 (519)
T ss_pred ceeE-----EEE-----c-CCCcEEEEEcccC--eeEEeecchhhHHHHhhcccccceEEEe--ccCCCCcceEEecCCC
Confidence 3110 111 1 1334444444444 78899987433 2233222 232332 2443344456666655
Q ss_pred CCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+ ++.||... .|+ .+..|+.+.. ++-++++|-........+.+. .|.+|..
T Consensus 462 ~--kvyIWhr~---sgk----ll~~LsGHs~~vNcVswNP~~p~m~ASasDDg---tIRIWg~ 512 (519)
T KOG0293|consen 462 S--KVYIWHRI---SGK----LLAVLSGHSKTVNCVSWNPADPEMFASASDDG---TIRIWGP 512 (519)
T ss_pred c--eEEEEEcc---CCc----eeEeecCCcceeeEEecCCCCHHHhhccCCCC---eEEEecC
Confidence 4 35666555 454 6777887765 456689987765554443332 3555443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-09 Score=109.06 Aligned_cols=273 Identities=15% Similarity=0.116 Sum_probs=152.2
Q ss_pred CcCCCceeEcCCCCEEEEEeCCC-CcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPD-HSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+..|+.+.+|||+++|+-..+.. ..+.-..|.++.++|+.+.+..... .+........
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~---------------------~g~~p~~i~~ 94 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS---------------------GGSSPCHIAV 94 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE---------------------SSSCEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc---------------------CCCCcEEEEE
Confidence 34557889999999888776643 2223345555555577766654211 1234456788
Q ss_pred eecCCCceEEEEe--CCCcEEEEeCCC-Ccccee--cCC----------CCCCCccCceeCCCCCEEEEEEC--CcEEEE
Q 004067 133 VKTSSKKKIIMVP--LPDGIYFQDLSC-SKPELK--LSS----------SSCSPVIDPHLSSDGTMIAFVRD--CELHVL 195 (776)
Q Consensus 133 sp~~~dg~~l~~~--~~~~l~~~d~~~-~~~~~~--l~~----------~~~~~~~~~~~SpDg~~la~~~~--~~l~~~ 195 (776)
+| ||++|+.+ ..+.+.+++++. |..... +.. ..........++|||+.++.... +.|+++
T Consensus 95 ~~---~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 95 DP---DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp CT---TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ec---CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 89 99999988 567788888765 433311 110 11123567899999998866543 458888
Q ss_pred ecCCCc--eeE---EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 196 NLLINE--QRQ---LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 196 ~l~~g~--~~~---lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
+++.+. ... +...... | .+.+.|+|||+.++......
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~-----G------------PRh~~f~pdg~~~Yv~~e~s--------------------- 213 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGS-----G------------PRHLAFSPDGKYAYVVNELS--------------------- 213 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTS-----S------------EEEEEE-TTSSEEEEEETTT---------------------
T ss_pred EEeCCCceEEEeeccccccCC-----C------------CcEEEEcCCcCEEEEecCCC---------------------
Confidence 876554 322 1111110 1 34788999999766554211
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
....++-++..+++.+.+..-...+...........+.+||||++| ++++|+.+.-.++.+|.++|.
T Consensus 214 ------------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 214 ------------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp ------------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECTTTEEEEEEECTTTTT
T ss_pred ------------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEeccCCEEEEEEEecCCCc
Confidence 1233444444466555443322111112223367789999999865 456788777667777777888
Q ss_pred eEEEEEeccCceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCceeeccc
Q 004067 351 RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTCLGPIT 409 (776)
Q Consensus 351 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~~~~lt 409 (776)
.+.+..-....-....-.+ +.+ +++++++ ..++.-.+|.+|.++|....+.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~-------s~~-g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAF-------SPD-GRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE--------TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEE-------eCC-CCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 8776443221000000111 222 3344444 4567667777787787665554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=110.15 Aligned_cols=142 Identities=14% Similarity=0.067 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCC-CCC--
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR-GTA-- 600 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r-g~g-- 600 (776)
.+..+|.. ++....+++|.|.... .+.|+||++||+.++....... ..| -....+.||.|+.||.- ++-
T Consensus 35 ~~~~s~~~-~g~~r~y~l~vP~g~~---~~apLvv~LHG~~~sgag~~~~-sg~---d~lAd~~gFlV~yPdg~~~~wn~ 106 (312)
T COG3509 35 SSVASFDV-NGLKRSYRLYVPPGLP---SGAPLVVVLHGSGGSGAGQLHG-TGW---DALADREGFLVAYPDGYDRAWNA 106 (312)
T ss_pred CCcccccc-CCCccceEEEcCCCCC---CCCCEEEEEecCCCChHHhhcc-cch---hhhhcccCcEEECcCccccccCC
Confidence 44455554 6677999999998853 3449999999977665432222 122 33455789999999632 211
Q ss_pred CCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.....+........+..++..+.+.++.+..+..||+.||+|.|.|.||.|+..+++.+|++|.++..+++..
T Consensus 107 ~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 107 NGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 0000111111123344567788899999999999999999999999999999999999999999988887664
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=109.33 Aligned_cols=229 Identities=17% Similarity=0.160 Sum_probs=144.2
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
..++.+||..+.+.+|...+ +.+-.+.+-|+.+... ..++.++..+++.||.|+.+||||.|.|...-
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~------~~~g~~~va~a~Gv~~------~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~ 75 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG------KASGRLVVAGATGVGQ------YFYRRFAAAAAKAGFEVLTFDYRGIGQSRPAS 75 (281)
T ss_pred cccccCCCccCccccccCCC------CCCCcEEecccCCcch------hHhHHHHHHhhccCceEEEEecccccCCCccc
Confidence 66788899999999986544 3343455556544322 24556788999999999999999999886544
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcC--CCCCccc-------
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA--PVTSWDG------- 677 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~--~~~~~~~------- 677 (776)
.......+.+....|+.++++.+.+.. ..-....+||||||.+...+.. ++..-.+++..+ +...|+.
T Consensus 76 ~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~-~~k~~a~~vfG~gagwsg~m~~~~~l~~ 152 (281)
T COG4757 76 LSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQ-HPKYAAFAVFGSGAGWSGWMGLRERLGA 152 (281)
T ss_pred cccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccccc-CcccceeeEeccccccccchhhhhcccc
Confidence 433323333345778999999998743 2346899999999987766555 453222222221 2222111
Q ss_pred -------------ccccccccccCCCCCCc-------cch------hcCC-----hhhhhccCCCcEEEEecCCCCccCh
Q 004067 678 -------------YDTFYTEKYMGLPSEDP-------VGY------EYSS-----VMHHVHKMKGKLLLVHGMIDENVHF 726 (776)
Q Consensus 678 -------------~~~~~~~~~~~~~~~~~-------~~~------~~~~-----~~~~~~~i~~P~lii~G~~D~~v~~ 726 (776)
+...+..++++.+.+-+ ..| .-.+ ..+..+.++.|++.+...+|+.+|+
T Consensus 153 ~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~ 232 (281)
T COG4757 153 VLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPP 232 (281)
T ss_pred eeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCH
Confidence 11111122223322111 011 1111 2234677889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEecCC----CCCCCCCCcHHHHHHHHHHHH
Q 004067 727 RHTARLINALVAARKPYEILIFPDE----RHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~~~----~H~~~~~~~~~~~~~~~~~fl 772 (776)
.....+..... +.+.+...++.+ ||.-...+..+..++.++.||
T Consensus 233 As~d~f~~~y~--nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 233 ASRDAFASFYR--NAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHHhhh--cCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 98888888775 356677777754 787544444578888888887
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=111.21 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=118.9
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~ 616 (776)
....++.|.+. +.+|+|||+||... .+.| +..+.++++++||+|+.+|+....... ..
T Consensus 4 ~~l~v~~P~~~----g~yPVv~f~~G~~~----~~s~---Ys~ll~hvAShGyIVV~~d~~~~~~~~-----------~~ 61 (259)
T PF12740_consen 4 KPLLVYYPSSA----GTYPVVLFLHGFLL----INSW---YSQLLEHVASHGYIVVAPDLYSIGGPD-----------DT 61 (259)
T ss_pred CCeEEEecCCC----CCcCEEEEeCCcCC----CHHH---HHHHHHHHHhCceEEEEecccccCCCC-----------cc
Confidence 34567888775 68999999999652 2233 345688999999999999965432211 12
Q ss_pred ccHHHHHHHHHHHHHc---C-----CCCCCcEEEEeechHHHHHHHHHhhC-----CCceEEEEEcCCCCCccccccccc
Q 004067 617 IDAEDQLTGAEWLIKQ---G-----LAKVGHIGLYGWSYGGYLSAITLARF-----PDVFQCAVSGAPVTSWDGYDTFYT 683 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~---~-----~id~~~i~l~G~S~GG~~a~~~a~~~-----~~~~~~~v~~~~~~~~~~~~~~~~ 683 (776)
.+.+++.+.++|+.+. . .+|.++++|+|||.||-+|..++..+ +.+|++++++.|+........
T Consensus 62 ~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~--- 138 (259)
T PF12740_consen 62 DEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQ--- 138 (259)
T ss_pred hhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccC---
Confidence 2466778888887763 1 25888999999999999999999886 457999999999863221100
Q ss_pred ccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCC--------cc-Ch-HHHHHHHHHHHHCCCCeEEEEecCCCC
Q 004067 684 EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE--------NV-HF-RHTARLINALVAARKPYEILIFPDERH 753 (776)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~--------~v-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~H 753 (776)
..|. .+ .+. ...-+...|+|++-..-.. .| |. .+-.++++.+ ..+...++..+.||
T Consensus 139 ----~~P~----v~-~~~--p~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~---~~p~~~~v~~~~GH 204 (259)
T PF12740_consen 139 ----TEPP----VL-TYT--PQSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDEC---KPPSWHFVAKDYGH 204 (259)
T ss_pred ----CCCc----cc-cCc--ccccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhc---CCCEEEEEeCCCCc
Confidence 0010 00 000 1112244799888765553 12 22 3557787876 46677778889999
Q ss_pred C
Q 004067 754 M 754 (776)
Q Consensus 754 ~ 754 (776)
.
T Consensus 205 ~ 205 (259)
T PF12740_consen 205 M 205 (259)
T ss_pred h
Confidence 7
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-08 Score=107.01 Aligned_cols=220 Identities=9% Similarity=0.046 Sum_probs=117.9
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecC-CCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPK-TCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+..+.+||||++|+-..... ..|..++++ +|+...+...+. ........++|
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~----~~i~~~~~~~~g~l~~~~~~~~----------------------~~~p~~i~~~~ 89 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE----FRVLSYRIADDGALTFAAESPL----------------------PGSPTHISTDH 89 (330)
T ss_pred CCccEEECCCCCEEEEEECCC----CcEEEEEECCCCceEEeeeecC----------------------CCCceEEEECC
Confidence 357889999999886544422 457777775 344433322111 12345678899
Q ss_pred cCCCceEEEEe--CCCcEEEEeCCC-CccceecC--CCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCC-CceeEEe
Q 004067 135 TSSKKKIIMVP--LPDGIYFQDLSC-SKPELKLS--SSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLI-NEQRQLT 206 (776)
Q Consensus 135 ~~~dg~~l~~~--~~~~l~~~d~~~-~~~~~~l~--~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~-g~~~~lt 206 (776)
||++|+.. .++.|.+++++. +.....+. .... ......++|||+.++.... +.|+++++++ |......
T Consensus 90 ---~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 90 ---QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred ---CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 99999877 367788888863 22210111 1111 2455789999998765543 4699999876 3221100
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
.... ....+. ..+.++|+|||++++...... ..
T Consensus 166 ~~~~--~~~~g~----------~p~~~~~~pdg~~lyv~~~~~-----------------------------------~~ 198 (330)
T PRK11028 166 PAEV--TTVEGA----------GPRHMVFHPNQQYAYCVNELN-----------------------------------SS 198 (330)
T ss_pred CCce--ecCCCC----------CCceEEECCCCCEEEEEecCC-----------------------------------CE
Confidence 0000 000000 034678999999876654211 34
Q ss_pred EEEEEcC--CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 287 LGVVSAA--GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 287 l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
|.+|+++ +++.+.+..-...|.......+...+.++|||++++.. ++..+.-.++.++.+++..+.
T Consensus 199 v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 199 VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-DRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-cCCCCeEEEEEEeCCCCeEEE
Confidence 6666665 44433322110001001122234468899999976654 554444344444444444433
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-09 Score=106.73 Aligned_cols=279 Identities=12% Similarity=0.098 Sum_probs=168.6
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecC--CCCCCCccCceeCCCCCEEEEEECCc--EEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLS--SSSCSPVIDPHLSSDGTMIAFVRDCE--LHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~la~~~~~~--l~~~~l~~ 199 (776)
.++.++.|.| ....|+.. .++.+-++-++|..-. .++ ....-++....|+|+|+..+|++... +|.||+.+
T Consensus 214 ~~I~sv~FHp---~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 214 GGITSVQFHP---TAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CCceEEEecC---CCceEEEecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 5789999999 55555544 4555544444444333 222 22233477889999999777776543 89999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
.+..++..-.. .. -.-.+.+..|||++.|++...+
T Consensus 290 ak~~k~~~~~g-------~e-------~~~~e~FeVShd~~fia~~G~~------------------------------- 324 (514)
T KOG2055|consen 290 AKVTKLKPPYG-------VE-------EKSMERFEVSHDSNFIAIAGNN------------------------------- 324 (514)
T ss_pred cccccccCCCC-------cc-------cchhheeEecCCCCeEEEcccC-------------------------------
Confidence 98887754221 11 0114467889999998886532
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
..|++....+++...- .+-.+.+..+.||.||+.|+... ..+.+|.||+....+.....+.+
T Consensus 325 -----G~I~lLhakT~eli~s---------~KieG~v~~~~fsSdsk~l~~~~----~~GeV~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 325 -----GHIHLLHAKTKELITS---------FKIEGVVSDFTFSSDSKELLASG----GTGEVYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred -----ceEEeehhhhhhhhhe---------eeeccEEeeEEEecCCcEEEEEc----CCceEEEEecCCcceEEEEeecC
Confidence 4578888888775432 44567889999999999777665 45689999999876555444433
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEe--CCCceeeccccC---CeEEEEEEeecCCCcEEEEEEcc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHD--INGTCLGPITEG---DWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~--~~g~~~~~lt~~---~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
... +..+.+ +. .+.++.+....|.-+||-.+ ..+++++++..- ...+.++ .|++|+..+++.+..
T Consensus 387 ~v~---gts~~~-----S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl-~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 387 SVH---GTSLCI-----SL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL-QFNHDAQILAIASRV 456 (514)
T ss_pred ccc---eeeeee-----cC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee-eeCcchhhhhhhhhc
Confidence 311 111111 11 23355556678888888765 345556655443 2344444 599999976666654
Q ss_pred CCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEee
Q 004067 435 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 435 ~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~ 484 (776)
.. ..+.|..++-- .-... =+..=+.-..+..+.|||.|-++++...
T Consensus 457 ~k-nalrLVHvPS~--TVFsN-fP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 457 KK-NALRLVHVPSC--TVFSN-FPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred cc-cceEEEeccce--eeecc-CCCCCCcccceEEEEecCCCceEEeecC
Confidence 32 22344443310 00000 0111111123567899999999998744
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=106.17 Aligned_cols=155 Identities=11% Similarity=0.164 Sum_probs=104.9
Q ss_pred eeEEEeecCCCceEEEEeCC-------------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC---Cc
Q 004067 128 TRYEWVKTSSKKKIIMVPLP-------------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD---CE 191 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~~-------------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~---~~ 191 (776)
..+.|+| +|+.|++... ..||.++..+.... .+.-...+.+..++|||+|+.+|.+.. ..
T Consensus 9 ~~~~W~~---~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~-~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQP---SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE-SIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecc---cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc-eeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 4678999 9999998622 34888887776655 454333335899999999999988853 46
Q ss_pred EEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcc
Q 004067 192 LHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE 271 (776)
Q Consensus 192 l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (776)
+.++++++.....+.... ...+.|||+|+.|+.......
T Consensus 85 v~lyd~~~~~i~~~~~~~--------------------~n~i~wsP~G~~l~~~g~~n~--------------------- 123 (194)
T PF08662_consen 85 VTLYDVKGKKIFSFGTQP--------------------RNTISWSPDGRFLVLAGFGNL--------------------- 123 (194)
T ss_pred cEEEcCcccEeEeecCCC--------------------ceEEEECCCCCEEEEEEccCC---------------------
Confidence 888888744444332111 346889999999998764211
Q ss_pred eecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEe--ecCceEEEEEEECCCC
Q 004067 272 DHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN--RSQTKLKVLKFDIKTG 349 (776)
Q Consensus 272 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~--~~~~~~~l~~~d~~~g 349 (776)
...|.+||..+.+.... .. ......+.|||||++++.+.. |.+.+..+.+|+..+.
T Consensus 124 ------------~G~l~~wd~~~~~~i~~---------~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 124 ------------NGDLEFWDVRKKKKIST---------FE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ------------CcEEEEEECCCCEEeec---------cc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 14588999996554332 12 234678999999997776643 2334456777777654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-08 Score=105.61 Aligned_cols=331 Identities=14% Similarity=0.059 Sum_probs=176.8
Q ss_pred EEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-eEEEeecCCCceEEEEe-
Q 004067 68 LITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVT-RYEWVKTSSKKKIIMVP- 145 (776)
Q Consensus 68 ~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~sp~~~dg~~l~~~- 145 (776)
.|.|+.+++ ..+|.++|.++.+....... +.... ...++| ||+++++.
T Consensus 6 ~l~~V~~~~---~~~v~viD~~t~~~~~~i~~------------------------~~~~h~~~~~s~---Dgr~~yv~~ 55 (369)
T PF02239_consen 6 NLFYVVERG---SGSVAVIDGATNKVVARIPT------------------------GGAPHAGLKFSP---DGRYLYVAN 55 (369)
T ss_dssp GEEEEEEGG---GTEEEEEETTT-SEEEEEE-------------------------STTEEEEEE-TT----SSEEEEEE
T ss_pred cEEEEEecC---CCEEEEEECCCCeEEEEEcC------------------------CCCceeEEEecC---CCCEEEEEc
Confidence 356665544 25799999998876433321 11232 456888 99998876
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.++.|.++|+.+++....+..+. .....++||||++++... .+++-++|.++.+..+....+.. + .
T Consensus 56 rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~-------~---~ 123 (369)
T PF02239_consen 56 RDGTVSVIDLATGKVVATIKVGG--NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM-------P---V 123 (369)
T ss_dssp TTSEEEEEETTSSSEEEEEE-SS--EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----------T
T ss_pred CCCeEEEEECCcccEEEEEecCC--CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccc-------c---c
Confidence 67889999999998775555543 367899999999886654 47899999998876544332210 0 0
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
+..-.|+.++.-||+....++.-.+. .+++++|....+......
T Consensus 124 ~~~~~Rv~aIv~s~~~~~fVv~lkd~-----------------------------------~~I~vVdy~d~~~~~~~~- 167 (369)
T PF02239_consen 124 DGPESRVAAIVASPGRPEFVVNLKDT-----------------------------------GEIWVVDYSDPKNLKVTT- 167 (369)
T ss_dssp TTS---EEEEEE-SSSSEEEEEETTT-----------------------------------TEEEEEETTTSSCEEEEE-
T ss_pred cccCCCceeEEecCCCCEEEEEEccC-----------------------------------CeEEEEEeccccccceee-
Confidence 00112244666788887666554332 346777766543222211
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-----cCceeecccccccCCCCccc
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTK 378 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~ 378 (776)
........+..|+|||++++...+.. ..|..+|+++++...+..-. .+...-.+ |
T Consensus 168 ------i~~g~~~~D~~~dpdgry~~va~~~s---n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph----p------- 227 (369)
T PF02239_consen 168 ------IKVGRFPHDGGFDPDGRYFLVAANGS---NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH----P------- 227 (369)
T ss_dssp ------EE--TTEEEEEE-TTSSEEEEEEGGG---TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE----T-------
T ss_pred ------ecccccccccccCcccceeeeccccc---ceeEEEeeccceEEEEeeccccccccccccccC----C-------
Confidence 12234556789999999776665443 26889999988765544321 11000000 1
Q ss_pred cCCeEEEEeccCCceEEEE--------EeCCC-ceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCC
Q 004067 379 YSGGFIWASEKTGFRHLYL--------HDING-TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP 449 (776)
Q Consensus 379 ~~~~~~~~s~~~g~~~l~~--------~~~~g-~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~ 449 (776)
..+.+|.....+...+-. ++... +..++|...... -+...+||++++++...-. +....+..++..+
T Consensus 228 -~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g--lFi~thP~s~~vwvd~~~~-~~~~~v~viD~~t 303 (369)
T PF02239_consen 228 -GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG--LFIKTHPDSRYVWVDTFLN-PDADTVQVIDKKT 303 (369)
T ss_dssp -TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS----EE--TT-SEEEEE-TT--SSHT-EEEEECCG
T ss_pred -CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc--ceeecCCCCccEEeeccCC-CCCceEEEEECcC
Confidence 122333333322222111 22111 223444433222 2334799999999984322 1235677777621
Q ss_pred CCCCccccceeecCCCC--eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 450 DWNHTLEAPVKLTNGKG--KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 450 ~g~~~~~~~~~l~~~~~--~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
- ....++....+ ...+.|++||+++.+.....+. +|.++|..+.+..+++.
T Consensus 304 -l----~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~--~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 304 -L----KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG--AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -T----EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT--EEEEEETTTTEEEEEEE
T ss_pred -c----ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC--EEEEEECCCcEEEEEEE
Confidence 1 12344443334 6778999999988887776553 89999998888766654
|
... |
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-11 Score=110.36 Aligned_cols=118 Identities=22% Similarity=0.171 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~ 601 (776)
+.+.+.+...++ ++..++-.|.. +..|+++++||++.+.. .|..++..+. .....|+++|+||||.
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~-----t~gpil~l~HG~G~S~L-------SfA~~a~el~s~~~~r~~a~DlRgHGe 115 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA-----TEGPILLLLHGGGSSAL-------SFAIFASELKSKIRCRCLALDLRGHGE 115 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC-----CCccEEEEeecCcccch-------hHHHHHHHHHhhcceeEEEeeccccCc
Confidence 455566655444 57777766653 35699999999877654 3444555554 4467889999999998
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
+--.....+.. .....|+.+.++++-.. ...+|.++||||||.+|.+.|...
T Consensus 116 Tk~~~e~dlS~---eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k 167 (343)
T KOG2564|consen 116 TKVENEDDLSL---ETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASK 167 (343)
T ss_pred cccCChhhcCH---HHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhh
Confidence 74333222111 11256777777766533 346899999999999999888753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-08 Score=120.10 Aligned_cols=281 Identities=11% Similarity=0.097 Sum_probs=162.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++|+|||++||..+. ...|.+|+..+..... ....+. ..+ .....+....|+|
T Consensus 486 V~~i~fs~dg~~latgg~-----D~~I~iwd~~~~~~~~~~~~~~~-----~~~------------~~~~~v~~l~~~~- 542 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGV-----NKKIKIFECESIIKDGRDIHYPV-----VEL------------ASRSKLSGICWNS- 542 (793)
T ss_pred EEEEEECCCCCEEEEEeC-----CCEEEEEECCcccccccccccce-----EEe------------cccCceeeEEecc-
Confidence 567899999999986544 2469999975421100 000000 000 0013466788986
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCC
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVRD-CELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
+++.+|+.. .++.|.+||+.+++....+..+. ..+....|+| |+..|+-.+. +.|.+||+.++...........
T Consensus 543 -~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~- 619 (793)
T PLN00181 543 -YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN- 619 (793)
T ss_pred -CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC-
Confidence 135666655 68899999999887653444433 3488899997 7777776654 5799999988765432222111
Q ss_pred ceecCCcccceecccCCcceEEE-CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWW-SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~w-spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
+..+.| +++|+.|+..+.+ ..|++||
T Consensus 620 -----------------v~~v~~~~~~g~~latgs~d------------------------------------g~I~iwD 646 (793)
T PLN00181 620 -----------------ICCVQFPSESGRSLAFGSAD------------------------------------HKVYYYD 646 (793)
T ss_pred -----------------eEEEEEeCCCCCEEEEEeCC------------------------------------CeEEEEE
Confidence 235667 5678888876533 3589999
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc-------eEEEEEeccCceee
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-------RKVILVEELDSWVN 364 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~ 364 (776)
+.+++...... ..+...+..+.|+ |+..++..+ .+..|.+||+..+. .+.+..+.......
T Consensus 647 ~~~~~~~~~~~-------~~h~~~V~~v~f~-~~~~lvs~s----~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 647 LRNPKLPLCTM-------IGHSKTVSYVRFV-DSSTLVSSS----TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred CCCCCccceEe-------cCCCCCEEEEEEe-CCCEEEEEE----CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 98765322111 4566678889997 666666554 45569999986431 22222222111110
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee---------cc-----ccCCeEEEEEEeecCCCcEEEE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG---------PI-----TEGDWMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~---------~l-----t~~~~~~~~~~~~s~dg~~i~~ 430 (776)
.|++ .+.++++...+| .+++|+....... .+ ..+...+..+ .|++++..++
T Consensus 715 ---~~s~--------~~~~lasgs~D~--~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v-~ws~~~~~lv- 779 (793)
T PLN00181 715 ---GLSV--------SDGYIATGSETN--EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV-CWRGQSSTLV- 779 (793)
T ss_pred ---EEcC--------CCCEEEEEeCCC--EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE-EEcCCCCeEE-
Confidence 1222 234555666667 7778876543211 01 1112234444 4999998644
Q ss_pred EEccCCCceeeEEEE
Q 004067 431 TGTLDGPLESHLYCA 445 (776)
Q Consensus 431 ~~~~~~~~~~~l~~~ 445 (776)
.++.++. +.+|.+
T Consensus 780 a~~~dG~--I~i~~~ 792 (793)
T PLN00181 780 AANSTGN--IKILEM 792 (793)
T ss_pred EecCCCc--EEEEec
Confidence 4444443 677754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-09 Score=111.98 Aligned_cols=268 Identities=12% Similarity=0.098 Sum_probs=176.8
Q ss_pred eEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEee
Q 004067 129 RYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTH 207 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~ 207 (776)
-..||. ...+++.....+|+|+..+++.. .|.......+..+.|+++|+.||.... +.+.+||.+.....+-..
T Consensus 182 lldWss----~n~laValg~~vylW~~~s~~v~-~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWSS----ANVLAVALGQSVYLWSASSGSVT-ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhccc----CCeEEEEecceEEEEecCCCceE-EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 357886 66788999999999999999987 666553445889999999999999865 679999988654433222
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.. +..++..++|. +..+...+.+ ..|
T Consensus 257 ~~----------------h~~rvg~laW~--~~~lssGsr~------------------------------------~~I 282 (484)
T KOG0305|consen 257 GS----------------HASRVGSLAWN--SSVLSSGSRD------------------------------------GKI 282 (484)
T ss_pred CC----------------cCceeEEEecc--CceEEEecCC------------------------------------CcE
Confidence 21 12235578887 3333332221 224
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc-eEEEEEeccCceeecc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-RKVILVEELDSWVNLH 366 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~ 366 (776)
..+|+...+...-.. ..+...+-.+.|++|++.++... ++..+++||..+.+ ...++++....-..
T Consensus 283 ~~~dvR~~~~~~~~~-------~~H~qeVCgLkws~d~~~lASGg----nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~-- 349 (484)
T KOG0305|consen 283 LNHDVRISQHVVSTL-------QGHRQEVCGLKWSPDGNQLASGG----NDNVVFIWDGLSPEPKFTFTEHTAAVKAL-- 349 (484)
T ss_pred EEEEEecchhhhhhh-------hcccceeeeeEECCCCCeeccCC----CccceEeccCCCccccEEEeccceeeeEe--
Confidence 444444333211101 44666777899999999887554 56679999985544 34556555442111
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+|.|- -.+++.+........|..||..+++..+-......|.++. |++..+.|+.+-.... .++.||+.+
T Consensus 350 -awcP~-------q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~-Wsk~~kEi~sthG~s~-n~i~lw~~p 419 (484)
T KOG0305|consen 350 -AWCPW-------QSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLI-WSKKYKELLSTHGYSE-NQITLWKYP 419 (484)
T ss_pred -eeCCC-------ccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEE-EcCCCCEEEEecCCCC-CcEEEEecc
Confidence 13332 2347777666666799999988877555444456678876 9999998888766543 468899987
Q ss_pred eCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeC
Q 004067 447 LYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 447 ~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~ 485 (776)
.- .....++.+.. +..+++||||..++.....
T Consensus 420 s~-------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 420 SM-------KLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred cc-------ceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 42 14556666654 5677999999998887654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-08 Score=92.87 Aligned_cols=270 Identities=11% Similarity=0.081 Sum_probs=169.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecC-CCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLS-SSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g 200 (776)
..+.++.|.- ||.+|+.. -+..+-+|+++.......+. .+....+....|+|-..-+.++.. ..|.+||...+
T Consensus 21 ~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 21 QKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 4688999999 99999986 45667788887764331222 122234677899987665655543 46999999988
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+...-+.+..+ ..-+.|||||+++++...+.
T Consensus 98 k~~~~i~~~~e------------------ni~i~wsp~g~~~~~~~kdD------------------------------- 128 (313)
T KOG1407|consen 98 KCTARIETKGE------------------NINITWSPDGEYIAVGNKDD------------------------------- 128 (313)
T ss_pred cEEEEeeccCc------------------ceEEEEcCCCCEEEEecCcc-------------------------------
Confidence 87766655443 22467999999999876432
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
.|-.+|..+-+...- .........+.|+-++..++.+. +.+.-.|..|. .-.-++.|..++..
T Consensus 129 -----~it~id~r~~~~~~~---------~~~~~e~ne~~w~~~nd~Fflt~--GlG~v~ILsyp-sLkpv~si~AH~sn 191 (313)
T KOG1407|consen 129 -----RITFIDARTYKIVNE---------EQFKFEVNEISWNNSNDLFFLTN--GLGCVEILSYP-SLKPVQSIKAHPSN 191 (313)
T ss_pred -----cEEEEEecccceeeh---------hcccceeeeeeecCCCCEEEEec--CCceEEEEecc-ccccccccccCCcc
Confidence 233444443333221 22233456788997776444433 22333454444 11223344445444
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
..-. .+++++-||... +....+-+||++.- -.+.++..+|.|+.+. ||.||+. +.+++++..
T Consensus 192 CicI------------~f~p~GryfA~G-sADAlvSLWD~~ELiC~R~isRldwpVRTlS-FS~dg~~-lASaSEDh~-- 254 (313)
T KOG1407|consen 192 CICI------------EFDPDGRYFATG-SADALVSLWDVDELICERCISRLDWPVRTLS-FSHDGRM-LASASEDHF-- 254 (313)
T ss_pred eEEE------------EECCCCceEeec-cccceeeccChhHhhhheeeccccCceEEEE-eccCcce-eeccCccce--
Confidence 3321 222333444332 12236778887643 2578899999999876 9999995 445555433
Q ss_pred eeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCC
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLD 487 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~ 487 (776)
++|-.+. .|. .+..+.+.....+++|.|.---|||.++..+
T Consensus 255 IDIA~ve---tGd----~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 255 IDIAEVE---TGD----RVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred EEeEecc---cCC----eEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 5666665 454 7888888877889999999999999988654
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=106.02 Aligned_cols=216 Identities=17% Similarity=0.182 Sum_probs=133.4
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECC--CCCCCC---------
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--RGTARR--------- 602 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--rg~g~~--------- 602 (776)
+..+..-+|.|+.. ...++.|+|+++.|..+.. ++|... ..+.+...++|++|+.||- ||.--.
T Consensus 25 ~c~Mtf~vylPp~a-~~~k~~P~lf~LSGLTCT~---~Nfi~K-sg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG 99 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDA-PRGKRCPVLFYLSGLTCTH---ENFIEK-SGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFG 99 (283)
T ss_pred ccceEEEEecCCCc-ccCCcCceEEEecCCcccc---hhhHhh-hhHHHhHhhcCeEEECCCCCCCccccCCCccccccc
Confidence 46688889999875 3446799999999965442 233221 1235566789999999994 554211
Q ss_pred -chhh-hhhhhhccCC-ccHHH-HH-HHHHHHH-HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 603 -GLKF-EASIKHNCGR-IDAED-QL-TGAEWLI-KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 603 -~~~~-~~~~~~~~~~-~~~~D-~~-~~i~~l~-~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
|..| .++....|.. +.+-| +. +..+.+. ....+|+.+++|+||||||+-|+..+.+++.+++.+-+++|+.+..
T Consensus 100 ~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~ 179 (283)
T KOG3101|consen 100 QGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPI 179 (283)
T ss_pred CCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcc
Confidence 1111 1111121211 11111 11 1122222 1234788999999999999999999999999999999999998754
Q ss_pred ccccc--ccccccCCCCCCccchhcCChhhhhccC---CCcEEEEecCCCCccChH-HHHHHHHHHHHCC-CCeEEEEec
Q 004067 677 GYDTF--YTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHFR-HTARLINALVAAR-KPYEILIFP 749 (776)
Q Consensus 677 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~-~~~~~~~~~ 749 (776)
.-... -...|+|. +...|..+++...+++. ..-+||-+|..|....-+ -.+.+.+++.... .++.+..-+
T Consensus 180 ~cpWGqKAf~gYLG~---~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~~~v~~r~~~ 256 (283)
T KOG3101|consen 180 NCPWGQKAFTGYLGD---NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLAEQLLPENLLEACKATWQAPVVFRLQE 256 (283)
T ss_pred cCcchHHHhhcccCC---ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhhhhcChHHHHHHhhccccccEEEEeec
Confidence 32211 11223343 45566666665555544 457999999999876521 2234455554332 577888889
Q ss_pred CCCCCCCC
Q 004067 750 DERHMPRR 757 (776)
Q Consensus 750 ~~~H~~~~ 757 (776)
+-+|+...
T Consensus 257 gyDHSYyf 264 (283)
T KOG3101|consen 257 GYDHSYYF 264 (283)
T ss_pred CCCcceee
Confidence 99998744
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.8e-12 Score=123.33 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=113.4
Q ss_pred cEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEE
Q 004067 589 ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 668 (776)
Q Consensus 589 ~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~ 668 (776)
|.|+++|.||+|.+... ...........|+.+.++.+++...+ +++.++||||||.+++.+++++|++++++++
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 78999999999988731 11123344588999999999887543 3599999999999999999999999999999
Q ss_pred cCCCCC---------ccc--cc--------c-----------ccc------ccc-c------------CCCCC-------
Q 004067 669 GAPVTS---------WDG--YD--------T-----------FYT------EKY-M------------GLPSE------- 692 (776)
Q Consensus 669 ~~~~~~---------~~~--~~--------~-----------~~~------~~~-~------------~~~~~------- 692 (776)
.++... +.. +. . .+. .+. . .....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 988510 000 00 0 000 000 0 00000
Q ss_pred ---CccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHH
Q 004067 693 ---DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 768 (776)
Q Consensus 693 ---~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 768 (776)
....+...+....+.+++.|+|+++|+.|..+|+.....+.+.+ .+.++++++++||.. ..+..+++.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~----~~~~~~~~~~~GH~~-~~~~~~~~~~~i 228 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLI----PNSQLVLIEGSGHFA-FLEGPDEFNEII 228 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHS----TTEEEEEETTCCSTH-HHHSHHHHHHHH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCCEEEECCCCChHH-HhcCHHhhhhhh
Confidence 00011111233456788999999999999999998888866554 568999999999976 444555555444
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-09 Score=116.00 Aligned_cols=247 Identities=12% Similarity=0.058 Sum_probs=144.3
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCc-EEEEeCCC----------Ccc--------ceecCCCCCCCccCceeCCCCCEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDG-IYFQDLSC----------SKP--------ELKLSSSSCSPVIDPHLSSDGTMIA 185 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~-l~~~d~~~----------~~~--------~~~l~~~~~~~~~~~~~SpDg~~la 185 (776)
..+..+.||| ||++||+..+.. |.+|..++ |.. ...+-.++ ..+....||||+..+|
T Consensus 70 ~sv~CVR~S~---dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 70 GSVNCVRFSP---DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLV 145 (942)
T ss_pred CceeEEEECC---CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-CccceeccCCCccEEE
Confidence 4677899999 999999996655 55676662 111 11222333 3488899999999999
Q ss_pred EEEC-CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCC
Q 004067 186 FVRD-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSS 264 (776)
Q Consensus 186 ~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (776)
.++. +.|.+|+..+.+......+... .+.++.|.|=|++++..+.|
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~~H~s-----------------~VKGvs~DP~Gky~ASqsdD---------------- 192 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLRGHQS-----------------LVKGVSWDPIGKYFASQSDD---------------- 192 (942)
T ss_pred EecccceEEEEccccceeeeeeecccc-----------------cccceEECCccCeeeeecCC----------------
Confidence 9875 5699999998855544443321 14578899999999987754
Q ss_pred CCCCCcceecCCCCCCCCCeEEEEEEEcCC-CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEE
Q 004067 265 VGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 343 (776)
..|.+|...+ +-.+.++-+. +......+...++|||||++|+....-......+-+
T Consensus 193 --------------------rtikvwrt~dw~i~k~It~pf---~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 193 --------------------RTLKVWRTSDWGIEKSITKPF---EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred --------------------ceEEEEEcccceeeEeeccch---hhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 3467777544 3344443321 113345678899999999988876544444455555
Q ss_pred EECCCCc-eEEEEEeccCceeec-cc-cccc-CCCCccccCCe---EEEEeccCCceEEEEEeCCCceeeccccC--CeE
Q 004067 344 FDIKTGQ-RKVILVEELDSWVNL-HD-CFTP-LDKGVTKYSGG---FIWASEKTGFRHLYLHDINGTCLGPITEG--DWM 414 (776)
Q Consensus 344 ~d~~~g~-~~~l~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~---~~~~s~~~g~~~l~~~~~~g~~~~~lt~~--~~~ 414 (776)
++-++=+ ...+..|..+.-... ++ .|.- ...+.+..++. ++.+..+|+ .|-+|......+-.+... +..
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr--SlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR--SLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc--cEEEEecCCCCchhhhhhhhcCc
Confidence 5554322 223444433311110 01 1111 00111111211 334445565 888887533322222221 334
Q ss_pred EEEEEeecCCCcEEEEEEcc
Q 004067 415 VEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 415 ~~~~~~~s~dg~~i~~~~~~ 434 (776)
+..+. |+|||-.|+.-+.+
T Consensus 328 I~Dms-WspdG~~LfacS~D 346 (942)
T KOG0973|consen 328 IVDMS-WSPDGFSLFACSLD 346 (942)
T ss_pred eeeee-EcCCCCeEEEEecC
Confidence 55654 99999887777654
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-11 Score=121.40 Aligned_cols=206 Identities=17% Similarity=0.156 Sum_probs=116.9
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC----cEEEEECCCCCCCCchhhhh-
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG----ILVWKLDNRGTARRGLKFEA- 608 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G----~~v~~~d~rg~g~~~~~~~~- 608 (776)
|..+..++|.|+++ ...+++|+|+++||.... ...+ ........+...| .++++++..+.......+..
T Consensus 5 g~~~~~~VylP~~y-~~~~~~PvlylldG~~~~---~~~~--~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~ 78 (251)
T PF00756_consen 5 GRDRRVWVYLPPGY-DPSKPYPVLYLLDGQSGW---FRNG--NAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLP 78 (251)
T ss_dssp TEEEEEEEEECTTG-GTTTTEEEEEEESHTTHH---HHHH--HHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSS
T ss_pred CCeEEEEEEECCCC-CCCCCCEEEEEccCCccc---cccc--hHHHHHHHHHHhCCCCceEEEEEecccccccccccccc
Confidence 56789999999986 445899999999994110 0111 1111222233333 45566665443311111110
Q ss_pred -----hhhhccCCccHHHH--HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc
Q 004067 609 -----SIKHNCGRIDAEDQ--LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 609 -----~~~~~~~~~~~~D~--~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
......+...+.+. .+.+.++.++..+...+.+|+|+||||+.|+.++.++|+.|.++++.+|..+.. ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~--~~~ 156 (251)
T PF00756_consen 79 AGSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS--PSL 156 (251)
T ss_dssp BCTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT--HCH
T ss_pred cccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc--ccc
Confidence 00000011112222 345566666666666669999999999999999999999999999999875433 001
Q ss_pred ccccccCCCCCCccchhcCChhhhh-----ccCCCcEEEEecCCCCccC----------hHHHHHHHHHHHHCCCCeEEE
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHV-----HKMKGKLLLVHGMIDENVH----------FRHTARLINALVAARKPYEIL 746 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~P~lii~G~~D~~v~----------~~~~~~~~~~l~~~~~~~~~~ 746 (776)
|.. .....|...++.... ..-..++++..|..|.... .....++.+.|...+....+.
T Consensus 157 w~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 229 (251)
T PF00756_consen 157 WGP-------SDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGIPHTYH 229 (251)
T ss_dssp HHH-------STCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEECTTESE
T ss_pred cCc-------CCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCCCceEE
Confidence 111 111222233333322 2223578899999998332 122334444455556788888
Q ss_pred EecCCCCCC
Q 004067 747 IFPDERHMP 755 (776)
Q Consensus 747 ~~~~~~H~~ 755 (776)
.++ ++|..
T Consensus 230 ~~~-G~H~~ 237 (251)
T PF00756_consen 230 VFP-GGHDW 237 (251)
T ss_dssp EEH-SESSH
T ss_pred Eec-Cccch
Confidence 888 47854
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=111.81 Aligned_cols=205 Identities=18% Similarity=0.161 Sum_probs=129.0
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
.+.|.++++||..++.. +| ..+...|+ ..+-.|+++|.|-||.|...-. +. .....+|+..+++...
T Consensus 50 ~~~Pp~i~lHGl~GS~~---Nw----~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~---h~--~~~ma~dv~~Fi~~v~ 117 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKE---NW----RSVAKNLSRKLGRDVYAVDVRNHGSSPKITV---HN--YEAMAEDVKLFIDGVG 117 (315)
T ss_pred CCCCceEEecccccCCC---CH----HHHHHHhcccccCceEEEecccCCCCccccc---cC--HHHHHHHHHHHHHHcc
Confidence 46789999999766643 34 44555565 4678999999999998853211 11 1123556666666665
Q ss_pred HcCCCCCCcEEEEeechHH-HHHHHHHhhCCCceEEEEEc--CCC-CCcc------------ccccc-------------
Q 004067 631 KQGLAKVGHIGLYGWSYGG-YLSAITLARFPDVFQCAVSG--APV-TSWD------------GYDTF------------- 681 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG-~~a~~~a~~~~~~~~~~v~~--~~~-~~~~------------~~~~~------------- 681 (776)
... ...++.++|||||| .+++..+..+|+.+..++.. +|. .... ..+..
T Consensus 118 ~~~--~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~ 195 (315)
T KOG2382|consen 118 GST--RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKS 195 (315)
T ss_pred ccc--ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHH
Confidence 432 23589999999999 77777777888877665543 331 1100 00000
Q ss_pred -------------ccccccCCCCCCc-----------cchhc---CChhhhh--ccCCCcEEEEecCCCCccChHHHHHH
Q 004067 682 -------------YTEKYMGLPSEDP-----------VGYEY---SSVMHHV--HKMKGKLLLVHGMIDENVHFRHTARL 732 (776)
Q Consensus 682 -------------~~~~~~~~~~~~~-----------~~~~~---~~~~~~~--~~i~~P~lii~G~~D~~v~~~~~~~~ 732 (776)
....+...+.+.. +.+.. .+.-..+ .....|+|+++|.++..++..+-.++
T Consensus 196 l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~ 275 (315)
T KOG2382|consen 196 LIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRM 275 (315)
T ss_pred HHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHH
Confidence 0000000011000 11111 1111112 44457999999999999998777677
Q ss_pred HHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 733 INALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 733 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.+.+ ..+++++++++||+. +.++++++...+.+|+.++
T Consensus 276 ~~~f----p~~e~~~ld~aGHwV-h~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 276 EKIF----PNVEVHELDEAGHWV-HLEKPEEFIESISEFLEEP 313 (315)
T ss_pred HHhc----cchheeecccCCcee-ecCCHHHHHHHHHHHhccc
Confidence 6655 568999999999998 7789999999999998765
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.2e-08 Score=100.50 Aligned_cols=243 Identities=10% Similarity=0.064 Sum_probs=130.0
Q ss_pred CeeeEEEeecCCCceEEEEe--CCCcEEEEeCC-CCccceecCCCC-CCCccCceeCCCCCEEEEEE--CCcEEEEecCC
Q 004067 126 GVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLS-CSKPELKLSSSS-CSPVIDPHLSSDGTMIAFVR--DCELHVLNLLI 199 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~-~~~~~~~l~~~~-~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~ 199 (776)
+.....++| ||++|+.. .++.|+.|+++ .+... .+.... ......+.++|||+.|+... ++.|.++++++
T Consensus 36 ~~~~l~~sp---d~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 36 QVQPMVISP---DKRHLYVGVRPEFRVLSYRIADDGALT-FAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCccEEECC---CCCEEEEEECCCCcEEEEEECCCCceE-EeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 455678899 99998876 45778878876 34332 221111 11245789999999877665 35688888863
Q ss_pred -CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 200 -NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 200 -g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
|.......... +.. ....+.++|||+.|+......
T Consensus 112 ~g~~~~~~~~~~------~~~---------~~~~~~~~p~g~~l~v~~~~~----------------------------- 147 (330)
T PRK11028 112 DGIPVAPIQIIE------GLE---------GCHSANIDPDNRTLWVPCLKE----------------------------- 147 (330)
T ss_pred CCCCCCceeecc------CCC---------cccEeEeCCCCCEEEEeeCCC-----------------------------
Confidence 32211111000 000 023567999999886544221
Q ss_pred CCCCCeEEEEEEEcCC-CceEE-----EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC--CCc
Q 004067 279 GASNVKVRLGVVSAAG-GPVSW-----MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TGQ 350 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~-~~~~~-----l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~--~g~ 350 (776)
..|.+||+++ +.... +... .......+.|+|||++++... .. ...|.+|+++ ++.
T Consensus 148 ------~~v~v~d~~~~g~l~~~~~~~~~~~--------~g~~p~~~~~~pdg~~lyv~~-~~--~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 148 ------DRIRLFTLSDDGHLVAQEPAEVTTV--------EGAGPRHMVFHPNQQYAYCVN-EL--NSSVDVWQLKDPHGE 210 (330)
T ss_pred ------CEEEEEEECCCCcccccCCCceecC--------CCCCCceEEECCCCCEEEEEe-cC--CCEEEEEEEeCCCCC
Confidence 3478888875 33221 1111 112244689999999776654 33 3346666654 555
Q ss_pred eEEEEEec-------cCceeecccccccCCCCccccCCeEEEEecc-CCceEEEEEeC--CCceeeccccC--CeEEEEE
Q 004067 351 RKVILVEE-------LDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDI--NGTCLGPITEG--DWMVEQI 418 (776)
Q Consensus 351 ~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~--~g~~~~~lt~~--~~~~~~~ 418 (776)
.+.+..-. .+.|.. .-.++| +++++|++++ ++ .|.+++. +++..+.+... ......+
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~-~i~~~p--------dg~~lyv~~~~~~--~I~v~~i~~~~~~~~~~~~~~~~~~p~~~ 279 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAA-DIHITP--------DGRHLYACDRTAS--LISVFSVSEDGSVLSFEGHQPTETQPRGF 279 (330)
T ss_pred EEEEEEEecCCCcCCCCccce-eEEECC--------CCCEEEEecCCCC--eEEEEEEeCCCCeEEEeEEEeccccCCce
Confidence 54332211 001100 001112 3446677654 44 5555554 44432222110 1112233
Q ss_pred EeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 419 VGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 419 ~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.+++||++||.....++ .+.+|.++.
T Consensus 280 -~~~~dg~~l~va~~~~~--~v~v~~~~~ 305 (330)
T PRK11028 280 -NIDHSGKYLIAAGQKSH--HISVYEIDG 305 (330)
T ss_pred -EECCCCCEEEEEEccCC--cEEEEEEcC
Confidence 48999999888765444 378888875
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=119.25 Aligned_cols=258 Identities=12% Similarity=0.080 Sum_probs=164.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCC--------CCCCCCCHHHHHHHHHHHHhcCCee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGG--------LDENNISPEEKLRRERLRERGLGVT 128 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~ 128 (776)
++-..||+|++.|| .|.....|++|.+...+.+++-+..... ....-+...+.........+...|.
T Consensus 381 v~ca~fSddssmlA-----~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLA-----CGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred ceeEeecCCcchhh-----ccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 46778999999998 5555567889888865544443221110 0000011111111111123445788
Q ss_pred eEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCCceeEEe
Q 004067 129 RYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLINEQRQLT 206 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g~~~~lt 206 (776)
..+|+| |.++|+.. .|..+-+|.+.+.... ..-.+...++..++|+|-|-+.|-.+..+ -.+|..+.....++.
T Consensus 456 g~sFsP---d~rfLlScSED~svRLWsl~t~s~~-V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 456 GCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCL-VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred eeeecc---cccceeeccCCcceeeeecccceeE-EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 999999 99999976 6789999999987766 44344445678899999998877775443 344444444444443
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
.+... -+.-+.|.|++.+++-.+.| ..
T Consensus 532 aghls-----------------DV~cv~FHPNs~Y~aTGSsD------------------------------------~t 558 (707)
T KOG0263|consen 532 AGHLS-----------------DVDCVSFHPNSNYVATGSSD------------------------------------RT 558 (707)
T ss_pred ccccc-----------------ccceEEECCcccccccCCCC------------------------------------ce
Confidence 32221 13347799999988865433 35
Q ss_pred EEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeec
Q 004067 287 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNL 365 (776)
Q Consensus 287 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~ 365 (776)
+.+||..+|...++- .++...+..++|||+|++|+... .+..|.+||+.+|.. ..+..+.+..++..
T Consensus 559 VRlWDv~~G~~VRiF--------~GH~~~V~al~~Sp~Gr~LaSg~----ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 559 VRLWDVSTGNSVRIF--------TGHKGPVTALAFSPCGRYLASGD----EDGLIKIWDLANGSLVKQLKGHTGTIYSLS 626 (707)
T ss_pred EEEEEcCCCcEEEEe--------cCCCCceEEEEEcCCCceEeecc----cCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence 799999999888873 56788899999999999988765 566799999999775 44455544333321
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCC
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN 401 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~ 401 (776)
|+. ++.++.+.. +...|.+||+.
T Consensus 627 ---FS~--------dg~vLasgg--~DnsV~lWD~~ 649 (707)
T KOG0263|consen 627 ---FSR--------DGNVLASGG--ADNSVRLWDLT 649 (707)
T ss_pred ---Eec--------CCCEEEecC--CCCeEEEEEch
Confidence 322 334544433 33488888864
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=102.64 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=140.6
Q ss_pred hhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEE
Q 004067 514 PRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWK 593 (776)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 593 (776)
+.+.+-..+..+.+.+-. .| .-..-+|.|.+ ..|+.||+|||.+....+..... .+..+.++||+|.+
T Consensus 35 e~Lkn~~i~r~e~l~Yg~-~g-~q~VDIwg~~~------~~klfIfIHGGYW~~g~rk~cls----iv~~a~~~gY~vas 102 (270)
T KOG4627|consen 35 EELKNKQIIRVEHLRYGE-GG-RQLVDIWGSTN------QAKLFIFIHGGYWQEGDRKMCLS----IVGPAVRRGYRVAS 102 (270)
T ss_pred HHhhhccccchhccccCC-CC-ceEEEEecCCC------CccEEEEEecchhhcCchhcccc----hhhhhhhcCeEEEE
Confidence 344555555666666543 33 45566777755 34899999998776553333221 24567789999999
Q ss_pred ECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCC
Q 004067 594 LDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPV 672 (776)
Q Consensus 594 ~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~ 672 (776)
++|--+. +.. .-...+.++..+++++.+... +.+.+.+-|||.|+++++.+..+ +..++.++++.+++
T Consensus 103 vgY~l~~---q~h-------tL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~Gv 171 (270)
T KOG4627|consen 103 VGYNLCP---QVH-------TLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGV 171 (270)
T ss_pred eccCcCc---ccc-------cHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhH
Confidence 9985221 110 011237789999999988643 45678899999999999998876 35578899999998
Q ss_pred CCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCC
Q 004067 673 TSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 752 (776)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 752 (776)
.+.+.....-...-++...++.+ .-...+.....++.|+|++.++.|..--.++...+...+++ ..+.++++.+
T Consensus 172 Y~l~EL~~te~g~dlgLt~~~ae--~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~ 245 (270)
T KOG4627|consen 172 YDLRELSNTESGNDLGLTERNAE--SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYD 245 (270)
T ss_pred hhHHHHhCCccccccCcccchhh--hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcc
Confidence 77654332111111222222111 11122345677888999999999987778899999888754 5788999999
Q ss_pred CC
Q 004067 753 HM 754 (776)
Q Consensus 753 H~ 754 (776)
|.
T Consensus 246 hy 247 (270)
T KOG4627|consen 246 HY 247 (270)
T ss_pred hh
Confidence 96
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-09 Score=100.72 Aligned_cols=346 Identities=15% Similarity=0.058 Sum_probs=193.1
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
-..|||+|++||-.+.- .+.+.|..+-+.-+++.. -..+.-..|+. |
T Consensus 13 ~c~fSp~g~yiAs~~~y------rlviRd~~tlq~~qlf~c------------------------ldki~yieW~a---d 59 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY------RLVIRDSETLQLHQLFLC------------------------LDKIVYIEWKA---D 59 (447)
T ss_pred ceeECCCCCeeeeeeee------EEEEeccchhhHHHHHHH------------------------HHHhhheeeec---c
Confidence 34799999999966542 477777766665454421 13466678999 9
Q ss_pred ceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc--EEEEecCCCceeEEeeCCCCCce
Q 004067 139 KKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE--LHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 139 g~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~--l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
+-+++-. .++.|.+|++..-+-...+..++.+ +....|||||+.|+..+..+ |-+|++-+.....+..-..+
T Consensus 60 s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag-ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~--- 135 (447)
T KOG4497|consen 60 SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG-LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN--- 135 (447)
T ss_pred ceeeeeeeeccceEEEEEeecceeEEEeccCCCc-ceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccC---
Confidence 9998865 6778999999988877677777765 88999999999999998764 67888877766555433222
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEE-----eecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRI-----MHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
..+++|.|||+..+..+..+........ ..-++-.........+..+.+| ..|.|
T Consensus 136 ---------------~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-----~~laV 195 (447)
T KOG4497|consen 136 ---------------VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-----NWLAV 195 (447)
T ss_pred ---------------ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-----cEEEE
Confidence 3478899999988877644321000000 0000000000112222333333 33555
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC-------------ceEEEEEEEC--------CC
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-------------TKLKVLKFDI--------KT 348 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-------------~~~~l~~~d~--------~~ 348 (776)
||.--.-.... ....-.+-.++|||-|+.|+..+.+.. ...++..+.. ++
T Consensus 196 wd~~Leykv~a---------Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~ 266 (447)
T KOG4497|consen 196 WDNVLEYKVYA---------YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKET 266 (447)
T ss_pred ecchhhheeee---------eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhh
Confidence 55321110000 112234556889998887776654310 0011111111 00
Q ss_pred CceEEEEE------ec---cCceeecc------------cccc-----cCCC----CccccCCeEEEEeccC-CceEEEE
Q 004067 349 GQRKVILV------EE---LDSWVNLH------------DCFT-----PLDK----GVTKYSGGFIWASEKT-GFRHLYL 397 (776)
Q Consensus 349 g~~~~l~~------~~---~~~~~~~~------------~~~~-----~~~~----~~~~~~~~~~~~s~~~-g~~~l~~ 397 (776)
-+..++.. .. ...|-..+ +... |.+. .++++.+..|..+.++ -.+.||+
T Consensus 267 ~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 267 FSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWL 346 (447)
T ss_pred cchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEE
Confidence 00000000 00 00111000 0001 1111 1455556655544443 3568999
Q ss_pred EeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCc
Q 004067 398 HDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNM 476 (776)
Q Consensus 398 ~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg 476 (776)
||+...+...+......++.+. |+|.--.+++-.+. .+||-..+ .|. ....++..+. +..+.|.-+|
T Consensus 347 Wdlq~l~l~avLiQk~piraf~-WdP~~prL~vctg~-----srLY~W~p--sg~----~~V~vP~~GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 347 WDLQNLKLHAVLIQKHPIRAFE-WDPGRPRLVVCTGK-----SRLYFWAP--SGP----RVVGVPKKGFNIQKLQWLQPG 414 (447)
T ss_pred EechhhhhhhhhhhccceeEEE-eCCCCceEEEEcCC-----ceEEEEcC--CCc----eEEecCCCCceeeeEEecCCC
Confidence 9998877666665556666665 99987666666543 56887776 553 4555555442 4567888888
Q ss_pred CEEEEE
Q 004067 477 RNFVDF 482 (776)
Q Consensus 477 ~~l~~~ 482 (776)
..++.-
T Consensus 415 ~~i~l~ 420 (447)
T KOG4497|consen 415 EFIVLC 420 (447)
T ss_pred cEEEEE
Confidence 776554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-08 Score=114.95 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=162.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCcc--------ceecCCCCCCCccCceeCCC-CCEEEEEE-CCcEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKP--------ELKLSSSSCSPVIDPHLSSD-GTMIAFVR-DCELH 193 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~--------~~~l~~~~~~~~~~~~~SpD-g~~la~~~-~~~l~ 193 (776)
..+....|+| ||++|+.. .++.|.+||+.+... ...+.. ...+....|+|. +..||... ++.|.
T Consensus 484 ~~V~~i~fs~---dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 484 NLVCAIGFDR---DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred CcEEEEEECC---CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 4578899999 99998876 678899999764211 101111 123567899874 66666554 45799
Q ss_pred EEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 194 VLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 194 ~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
+||+.+++.......... .+..+.|+| |+..|+..+.+
T Consensus 559 lWd~~~~~~~~~~~~H~~-----------------~V~~l~~~p~~~~~L~Sgs~D------------------------ 597 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEK-----------------RVWSIDYSSADPTLLASGSDD------------------------ 597 (793)
T ss_pred EEECCCCeEEEEecCCCC-----------------CEEEEEEcCCCCCEEEEEcCC------------------------
Confidence 999998765433222111 145788997 67777665533
Q ss_pred ecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec-cCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 273 HAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
..|.+||+.++..... ......+..+.|+ ++|+.++..+ .+..|++||+.++..
T Consensus 598 ------------g~v~iWd~~~~~~~~~---------~~~~~~v~~v~~~~~~g~~latgs----~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 598 ------------GSVKLWSINQGVSIGT---------IKTKANICCVQFPSESGRSLAFGS----ADHKVYYYDLRNPKL 652 (793)
T ss_pred ------------CEEEEEECCCCcEEEE---------EecCCCeEEEEEeCCCCCEEEEEe----CCCeEEEEECCCCCc
Confidence 3589999987764322 1122346678885 5688777665 456799999977542
Q ss_pred --EEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC-------ceeeccccCCeEEEEEEeec
Q 004067 352 --KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-------TCLGPITEGDWMVEQIVGVN 422 (776)
Q Consensus 352 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-------~~~~~lt~~~~~~~~~~~~s 422 (776)
..+..+...... +.+.++..++++..++ .|.+||+.. .....++.+...+. ...|+
T Consensus 653 ~~~~~~~h~~~V~~------------v~f~~~~~lvs~s~D~--~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~-~v~~s 717 (793)
T PLN00181 653 PLCTMIGHSKTVSY------------VRFVDSSTLVSSSTDN--TLKLWDLSMSISGINETPLHSFMGHTNVKN-FVGLS 717 (793)
T ss_pred cceEecCCCCCEEE------------EEEeCCCEEEEEECCC--EEEEEeCCCCccccCCcceEEEcCCCCCee-EEEEc
Confidence 233333222111 1222344566666666 788888753 23445555443333 34589
Q ss_pred CCCcEEEEEEccCCCceeeEEEEEeCC-------CCCCcccccee--ecC-CCCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 423 EASGQVYFTGTLDGPLESHLYCAKLYP-------DWNHTLEAPVK--LTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~~~~~l~~~~~~~-------~g~~~~~~~~~--l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
+++++|+..+ .++ .+.+|...... ... ..... +.. ...+..+.|+|+++.|+...+. +.|
T Consensus 718 ~~~~~lasgs-~D~--~v~iw~~~~~~~~~s~~~~~~---~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d----G~I 787 (793)
T PLN00181 718 VSDGYIATGS-ETN--EVFVYHKAFPMPVLSYKFKTI---DPVSGLEVDDASQFISSVCWRGQSSTLVAANST----GNI 787 (793)
T ss_pred CCCCEEEEEe-CCC--EEEEEECCCCCceEEEecccC---CcccccccCCCCcEEEEEEEcCCCCeEEEecCC----CcE
Confidence 9998544444 443 36777654210 000 00101 111 1236678999999987766543 347
Q ss_pred EEEEc
Q 004067 493 LLCSL 497 (776)
Q Consensus 493 ~~~~~ 497 (776)
.+++.
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 77663
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=117.48 Aligned_cols=189 Identities=18% Similarity=0.197 Sum_probs=100.3
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh----h--hhh-------h-------
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF----E--ASI-------K------- 611 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~----~--~~~-------~------- 611 (776)
.++|+|||-||..++.. .+..++..||++||+|+++|.|.......-. . ... .
T Consensus 98 ~~~PvvIFSHGlgg~R~-------~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRT-------SYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLR 170 (379)
T ss_dssp S-EEEEEEE--TT--TT-------TTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE--
T ss_pred CCCCEEEEeCCCCcchh-------hHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccc
Confidence 57999999999877654 3345688999999999999999542211000 0 000 0
Q ss_pred -----------hccCCccHHHHHHHHHHHHHc--------------------CCCCCCcEEEEeechHHHHHHHHHhhCC
Q 004067 612 -----------HNCGRIDAEDQLTGAEWLIKQ--------------------GLAKVGHIGLYGWSYGGYLSAITLARFP 660 (776)
Q Consensus 612 -----------~~~~~~~~~D~~~~i~~l~~~--------------------~~id~~~i~l~G~S~GG~~a~~~a~~~~ 660 (776)
...-.....|+..+++.|.+. ..+|.++|+++|||+||..++.++.+.
T Consensus 171 ~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d- 249 (379)
T PF03403_consen 171 DFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD- 249 (379)
T ss_dssp ---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-
Confidence 000001245667777777531 235678999999999999999888875
Q ss_pred CceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 661 DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
.+|+++|++.|... |... ....+++.|+|+|+.+. .. ...+...+. .+....
T Consensus 250 ~r~~~~I~LD~W~~---------------Pl~~----------~~~~~i~~P~L~InSe~-f~-~~~~~~~~~-~~~~~~ 301 (379)
T PF03403_consen 250 TRFKAGILLDPWMF---------------PLGD----------EIYSKIPQPLLFINSES-FQ-WWENIFRMK-KVISNN 301 (379)
T ss_dssp TT--EEEEES---T---------------TS-G----------GGGGG--S-EEEEEETT-T---HHHHHHHH-TT--TT
T ss_pred cCcceEEEeCCccc---------------CCCc----------ccccCCCCCEEEEECcc-cC-ChhhHHHHH-HHhccC
Confidence 66899999876521 1110 11255778999998765 32 223333332 344455
Q ss_pred CCeEEEEecCCCCCC-C-----CC------------Cc----HHHHHHHHHHHHHHhC
Q 004067 741 KPYEILIFPDERHMP-R-----RH------------RD----RIYMEERIWEFIERTL 776 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~-~-----~~------------~~----~~~~~~~~~~fl~~~l 776 (776)
....++.+.|..|.- . .+ .+ .....+..++||++||
T Consensus 302 ~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L 359 (379)
T PF03403_consen 302 KESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHL 359 (379)
T ss_dssp S-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999972 0 11 01 2445677888888874
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.2e-08 Score=104.43 Aligned_cols=249 Identities=8% Similarity=0.027 Sum_probs=146.1
Q ss_pred eeEcCCCCEEEEEeCCC-CcCcceEEEEecCCCceE-EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 60 IGFSPDDNLITYLLSPD-HSLSRKVFSFDPKTCKQE-LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~-~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..++..++++|...... |.....|.+|+....... .+..| ...+....|+|
T Consensus 32 ~~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH------------------------~~~V~~lafsP--- 84 (568)
T PTZ00420 32 CGIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGH------------------------TSSILDLQFNP--- 84 (568)
T ss_pred eeEeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCC------------------------CCCEEEEEEcC---
Confidence 34566778888776532 222346777776544332 22222 24788999999
Q ss_pred C-ceEEEEe-CCCcEEEEeCCCCcc--c------eecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEE
Q 004067 138 K-KKIIMVP-LPDGIYFQDLSCSKP--E------LKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQL 205 (776)
Q Consensus 138 d-g~~l~~~-~~~~l~~~d~~~~~~--~------~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~l 205 (776)
+ +..|+.. .++.|.+||+.++.. . ..+..+. ..+....|+|++..++.+. ++.|.+||+.+++....
T Consensus 85 ~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~-~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~ 163 (568)
T PTZ00420 85 CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK-KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ 163 (568)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC-CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 8 5666654 788999999975421 1 0222222 3478899999999876543 56799999998875322
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
...+. .+..+.|+|||+.|+....+ .
T Consensus 164 i~~~~------------------~V~SlswspdG~lLat~s~D------------------------------------~ 189 (568)
T PTZ00420 164 INMPK------------------KLSSLKWNIKGNLLSGTCVG------------------------------------K 189 (568)
T ss_pred EecCC------------------cEEEEEECCCCCEEEEEecC------------------------------------C
Confidence 11111 14578899999988765432 3
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcc-----eEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-CceEEEEEecc
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEE-----YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVILVEEL 359 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~ 359 (776)
.|.+||+.+++...- . ..+.+ .+....|++|++.|+.+.........|.+||+.. +..........
T Consensus 190 ~IrIwD~Rsg~~i~t-l-------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 190 HMHIIDPRKQEIASS-F-------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred EEEEEECCCCcEEEE-E-------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 589999998875432 1 12222 1223356799887776654433445799999984 43332222211
Q ss_pred CceeecccccccCCCCcccc-CCe-EEEEeccCCceEEEEEeCCCceeecccc
Q 004067 360 DSWVNLHDCFTPLDKGVTKY-SGG-FIWASEKTGFRHLYLHDINGTCLGPITE 410 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~s~~~g~~~l~~~~~~g~~~~~lt~ 410 (776)
... ...| .++ +.+ ++.+...++ .|++|++..+....|+.
T Consensus 262 ~~~-----~L~p-----~~D~~tg~l~lsGkGD~--tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 262 ASA-----PLIP-----HYDESTGLIYLIGKGDG--NCRYYQHSLGSIRKVNE 302 (568)
T ss_pred Ccc-----ceEE-----eeeCCCCCEEEEEECCC--eEEEEEccCCcEEeecc
Confidence 101 0111 111 223 444444455 88888876665555543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-08 Score=107.24 Aligned_cols=162 Identities=11% Similarity=0.130 Sum_probs=105.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCcc-------ceecCCCCCCCccCceeCCCCC-EEEEEE-CCcEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKP-------ELKLSSSSCSPVIDPHLSSDGT-MIAFVR-DCELHV 194 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~-------~~~l~~~~~~~~~~~~~SpDg~-~la~~~-~~~l~~ 194 (776)
..+..+.|+| .|++.|+.. .++.|.+||+.++.. ...+..+. ..+..+.|+|++. .|+..+ ++.|.+
T Consensus 76 ~~V~~v~fsP--~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 76 GPIIDVAFNP--FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-KKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCEEEEEEcC--CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-CcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 4688999998 245666655 788999999976532 11333333 3477899999875 555444 457999
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
||+.+++.......... .+..+.|+|||+.|+..+.|
T Consensus 153 WDl~tg~~~~~l~~h~~-----------------~V~sla~spdG~lLatgs~D-------------------------- 189 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSD-----------------QITSLEWNLDGSLLCTTSKD-------------------------- 189 (493)
T ss_pred EECCCCeEEEEEcCCCC-----------------ceEEEEEECCCCEEEEecCC--------------------------
Confidence 99998865433221111 14578899999988876643
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCc-ceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDE-EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
..|.+||+.+++...- . ..+. .....+.|++++..++........+..|.+||+.+..
T Consensus 190 ----------g~IrIwD~rsg~~v~t-l-------~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 190 ----------KKLNIIDPRDGTIVSS-V-------EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred ----------CEEEEEECCCCcEEEE-E-------ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 3589999988775332 1 1222 2234678999987665443222345679999997644
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=103.61 Aligned_cols=265 Identities=13% Similarity=0.075 Sum_probs=165.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+...+|||||++++--+. .+-|-+||-.+|+.+.=..-+. .+.+. -....+....||.
T Consensus 216 ~EcA~FSPDgqyLvsgSv-----DGFiEVWny~~GKlrKDLkYQA----------qd~fM-----Mmd~aVlci~FSR-- 273 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSV-----DGFIEVWNYTTGKLRKDLKYQA----------QDNFM-----MMDDAVLCISFSR-- 273 (508)
T ss_pred hhheeeCCCCceEeeccc-----cceeeeehhccchhhhhhhhhh----------hccee-----ecccceEEEeecc--
Confidence 457799999999984433 3458899999988643221000 00000 0123577889999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
|..-|+.. .+++|.+|.+.+|...+++.......+....||.|+..|+..+..+ +.+..+++|+...-
T Consensus 274 -DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE--------- 343 (508)
T KOG0275|consen 274 -DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE--------- 343 (508)
T ss_pred -cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHH---------
Confidence 99999876 8899999999999876455433323478899999999998877654 66667777765322
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
..|..++ +....|++||..|+..+.| ..+.+|+.++
T Consensus 344 frGHsSy--------vn~a~ft~dG~~iisaSsD------------------------------------gtvkvW~~Kt 379 (508)
T KOG0275|consen 344 FRGHSSY--------VNEATFTDDGHHIISASSD------------------------------------GTVKVWHGKT 379 (508)
T ss_pred hcCcccc--------ccceEEcCCCCeEEEecCC------------------------------------ccEEEecCcc
Confidence 1223333 3356799999999987754 3478999988
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC--ceeecccccccC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD--SWVNLHDCFTPL 372 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~--~~~~~~~~~~~~ 372 (776)
++...---+ .+.+..+..+-.-|.+---+.+.||. ..+|++++.+.-++..+...-. .++ ....+|.
T Consensus 380 teC~~Tfk~------~~~d~~vnsv~~~PKnpeh~iVCNrs---ntv~imn~qGQvVrsfsSGkREgGdFi--~~~lSpk 448 (508)
T KOG0275|consen 380 TECLSTFKP------LGTDYPVNSVILLPKNPEHFIVCNRS---NTVYIMNMQGQVVRSFSSGKREGGDFI--NAILSPK 448 (508)
T ss_pred hhhhhhccC------CCCcccceeEEEcCCCCceEEEEcCC---CeEEEEeccceEEeeeccCCccCCceE--EEEecCC
Confidence 875332111 23445566667777654333444544 4699999987666666554322 222 2233332
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeC-CCceeeccccCCeEEEEE
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDI-NGTCLGPITEGDWMVEQI 418 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~-~g~~~~~lt~~~~~~~~~ 418 (776)
+.++|...+++ .+|-+.. .|+-.+.+.-++..+.++
T Consensus 449 --------GewiYcigED~--vlYCF~~~sG~LE~tl~VhEkdvIGl 485 (508)
T KOG0275|consen 449 --------GEWIYCIGEDG--VLYCFSVLSGKLERTLPVHEKDVIGL 485 (508)
T ss_pred --------CcEEEEEccCc--EEEEEEeecCceeeeeeccccccccc
Confidence 23455555566 7777774 455556666555544444
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-08 Score=108.72 Aligned_cols=207 Identities=8% Similarity=0.001 Sum_probs=133.6
Q ss_pred CCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCce--------EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 004067 57 PTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQ--------ELVFSPPDGGLDENNISPEEKLRRERLRERGLGV 127 (776)
Q Consensus 57 ~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~--------~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (776)
+..++||| |++.|+..+.+ ..|.+||+.++.. ..+.. +...+
T Consensus 78 V~~v~fsP~d~~~LaSgS~D-----gtIkIWdi~~~~~~~~~~~~l~~L~g------------------------H~~~V 128 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASED-----GTIMGWGIPEEGLTQNISDPIVHLQG------------------------HTKKV 128 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCC-----CEEEEEecCCCccccccCcceEEecC------------------------CCCcE
Confidence 57899999 89988865542 4699999876532 11221 12468
Q ss_pred eeEEEeecCCCce-EEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE
Q 004067 128 TRYEWVKTSSKKK-IIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ 204 (776)
Q Consensus 128 ~~~~~sp~~~dg~-~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~ 204 (776)
....|+| ++. .|+. ..++.|.+||+.+++....+..... .+..+.|+|||+.|+..+. +.|.+||+.+++...
T Consensus 129 ~~l~f~P---~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 129 GIVSFHP---SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred EEEEeCc---CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 8899999 874 4554 3688899999998876634443333 4788999999999888764 579999999886533
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
-.....+. ......|+|++..|+....+... .
T Consensus 205 tl~~H~~~----------------~~~~~~w~~~~~~ivt~G~s~s~--------------------------------D 236 (493)
T PTZ00421 205 SVEAHASA----------------KSQRCLWAKRKDLIITLGCSKSQ--------------------------------Q 236 (493)
T ss_pred EEecCCCC----------------cceEEEEcCCCCeEEEEecCCCC--------------------------------C
Confidence 22111110 01246699998877655432111 1
Q ss_pred EEEEEEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 285 VRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 285 ~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
.+|.+||+.... ...... ......+..+.|++|++.++.... .+..|.+||+.+++....
T Consensus 237 r~VklWDlr~~~~p~~~~~-------~d~~~~~~~~~~d~d~~~L~lggk---gDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 237 RQIMLWDTRKMASPYSTVD-------LDQSSALFIPFFDEDTNLLYIGSK---GEGNIRCFELMNERLTFC 297 (493)
T ss_pred CeEEEEeCCCCCCceeEec-------cCCCCceEEEEEcCCCCEEEEEEe---CCCeEEEEEeeCCceEEE
Confidence 458899987543 221110 122234556789999997766542 355799999988775443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-07 Score=90.44 Aligned_cols=245 Identities=13% Similarity=0.090 Sum_probs=154.9
Q ss_pred CccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCC-CCCceecCCcccceecccCCcceEEECCCCCeEEEEEec
Q 004067 171 PVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGA-NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVD 248 (776)
Q Consensus 171 ~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 248 (776)
.+..+.||+||..++..+.+ .|.++|..+|......... .+ +....|.-....+++.+.-
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG------------------~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG------------------VDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccc------------------ccEEEEecCCceEEEccCC
Confidence 57889999999999886665 6999999988655443322 11 2234465566667665531
Q ss_pred CCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEE
Q 004067 249 SSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILT 328 (776)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l 328 (776)
. ...|+..++.+++-.+. +.+|...+..++-||-+...
T Consensus 78 ~----------------------------------d~tIryLsl~dNkylRY--------F~GH~~~V~sL~~sP~~d~F 115 (311)
T KOG1446|consen 78 E----------------------------------DDTIRYLSLHDNKYLRY--------FPGHKKRVNSLSVSPKDDTF 115 (311)
T ss_pred C----------------------------------CCceEEEEeecCceEEE--------cCCCCceEEEEEecCCCCeE
Confidence 1 03467777777765544 26788889999999977755
Q ss_pred EEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCC---Ccee
Q 004067 329 AQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN---GTCL 405 (776)
Q Consensus 329 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~---g~~~ 405 (776)
+..+ .+..|.+||+...+.+-+..-... |. .+.|+.+++|+...++. .|.++|+. .|..
T Consensus 116 lS~S----~D~tvrLWDlR~~~cqg~l~~~~~----------pi---~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 116 LSSS----LDKTVRLWDLRVKKCQGLLNLSGR----------PI---AAFDPEGLIFALANGSE-LIKLYDLRSFDKGPF 177 (311)
T ss_pred Eecc----cCCeEEeeEecCCCCceEEecCCC----------cc---eeECCCCcEEEEecCCC-eEEEEEecccCCCCc
Confidence 5554 456799999998777666543322 11 15566777776644332 78888853 3333
Q ss_pred ec--cccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC----eEEEEEcCCcCEE
Q 004067 406 GP--ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG----KHVAVLDHNMRNF 479 (776)
Q Consensus 406 ~~--lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~----~~~~~~spdg~~l 479 (776)
+. ++..+.....-+.||+|||.|+.+.+. ..++.++.- +|. ....++.... ...+.|+|||+.+
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-----s~~~~lDAf-~G~----~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLSTNA-----SFIYLLDAF-DGT----VKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEEeCC-----CcEEEEEcc-CCc----EeeeEeeccCCCCcceeEEECCCCcEE
Confidence 32 332222233445699999998888765 246667654 454 2333332221 2467999999866
Q ss_pred EEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 480 VDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 480 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
+-... . +.|.+|+..+|..+..+.
T Consensus 248 l~gs~-d---g~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 248 LSGSD-D---GTIHVWNLETGKKVAVLR 271 (311)
T ss_pred EEecC-C---CcEEEEEcCCCcEeeEec
Confidence 65543 2 359999999998755443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-09 Score=100.17 Aligned_cols=141 Identities=13% Similarity=0.204 Sum_probs=96.9
Q ss_pred CceeEcCCCCEEEEEeCCC--C-----cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 58 TSIGFSPDDNLITYLLSPD--H-----SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~--~-----~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
..+.|+|+|++|+.....+ . .+..+||.++..+.....+.-.. ...+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-----------------------~~~I~~~ 65 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-----------------------EGPIHDV 65 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-----------------------CCceEEE
Confidence 4678999999999887621 1 12358888887766654443211 1248999
Q ss_pred EEeecCCCceEEEEe---CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCcee
Q 004067 131 EWVKTSSKKKIIMVP---LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQR 203 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~---~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~ 203 (776)
.|+| +|+.+++. .+..+.++|+.+.... .+.. .....+.|||+|+.|++..- ++|.+||+.+.+..
T Consensus 66 ~WsP---~g~~favi~g~~~~~v~lyd~~~~~i~-~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 66 AWSP---NGNEFAVIYGSMPAKVTLYDVKGKKIF-SFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred EECc---CCCEEEEEEccCCcccEEEcCcccEeE-eecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence 9999 99998876 3457899999744443 4432 23567899999999999863 46899999855443
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
....... ...+.|||||++|+....
T Consensus 139 ~~~~~~~-------------------~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 139 STFEHSD-------------------ATDVEWSPDGRYLATATT 163 (194)
T ss_pred eccccCc-------------------EEEEEEcCCCCEEEEEEe
Confidence 2221111 236789999999998764
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-08 Score=98.13 Aligned_cols=320 Identities=13% Similarity=0.084 Sum_probs=172.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+-++|||-|.+|+-.-.++ |-+| ||+. .++ .+=.+.++.-..|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G------I~lW---GG~~f~r~-----------------------~RF~Hp~Vq~idfSP-- 259 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG------IALW---GGESFDRI-----------------------QRFYHPGVQFIDFSP-- 259 (698)
T ss_pred eeEEecCCceEEEEEeccc------eeee---cCccHHHH-----------------------HhccCCCceeeecCC--
Confidence 5789999999998654432 4444 3432 111 111246788888999
Q ss_pred CCceEEEEe------------CCCcEEEEeCCCCccceecCC--CCCCCccCceeCCCCCEEEEEECCcEEEEecCCCce
Q 004067 137 SKKKIIMVP------------LPDGIYFQDLSCSKPELKLSS--SSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQ 202 (776)
Q Consensus 137 ~dg~~l~~~------------~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~ 202 (776)
.-++|+.- ...+|.+||+.+|...+.+.. .+...---++||-|++++|-...+.|.++.... .
T Consensus 260 -~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps--f 336 (698)
T KOG2314|consen 260 -NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS--F 336 (698)
T ss_pred -ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc--e
Confidence 99998843 225699999999988733322 121112246999999999998887777775432 2
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
..+-.. .-...| +..+.|||-+.-|||........+
T Consensus 337 ~lld~K---slki~g------------Ir~FswsP~~~llAYwtpe~~~~p----------------------------- 372 (698)
T KOG2314|consen 337 MLLDKK---SLKISG------------IRDFSWSPTSNLLAYWTPETNNIP----------------------------- 372 (698)
T ss_pred eeeccc---ccCCcc------------ccCcccCCCcceEEEEcccccCCc-----------------------------
Confidence 222111 111222 457889999999999874433211
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCc--------eEEEEEEECCCCceEEE
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQT--------KLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~l~~~d~~~g~~~~l 354 (776)
..+-+..+-+++..+.. .-..-..-.+.|-..|++|.+-..|..+ +.+|++++-+. -+...
T Consensus 373 --arvtL~evPs~~~iRt~--------nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-Ipve~ 441 (698)
T KOG2314|consen 373 --ARVTLMEVPSKREIRTK--------NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-IPVEV 441 (698)
T ss_pred --ceEEEEecCccceeeec--------cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-CCcee
Confidence 22233333333221110 0111223357899999977766555422 22444444221 11111
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEE--EEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHL--YLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l--~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.+-.+.. ....|.| .++++..++......++ |.+...+++++.+..-+....+-+.|||.|+.+++.+
T Consensus 442 velke~v---i~FaWEP-------~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 442 VELKESV---IAFAWEP-------HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAA 511 (698)
T ss_pred eecchhe---eeeeecc-------CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEE
Confidence 1111110 0011112 24557777655444444 4444445555555444433334456999999988876
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
-.... ..|+-++++-.. ........+.....+.|.|.|++++..++.
T Consensus 512 l~s~~--g~l~F~D~~~a~----~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 512 LVSRR--GDLEFYDTDYAD----LKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred ecccc--cceEEEecchhh----hhhccCccccccccceECCCCCEEEEeeeh
Confidence 54322 244444441000 112222223345567999999988876653
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-09 Score=98.66 Aligned_cols=177 Identities=18% Similarity=0.149 Sum_probs=102.3
Q ss_pred EEEEcCCCCcccccccccccchhhhHHHHhCC--cEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 557 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 557 vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G--~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+++||..++.. ......+.+++++.+ ..+.+++++-. ..+..+.++.+++..
T Consensus 2 ilYlHGF~Ssp~-----S~Ka~~l~~~~~~~~~~~~~~~p~l~~~-------------------p~~a~~~l~~~i~~~- 56 (187)
T PF05728_consen 2 ILYLHGFNSSPQ-----SFKAQALKQYFAEHGPDIQYPCPDLPPF-------------------PEEAIAQLEQLIEEL- 56 (187)
T ss_pred eEEecCCCCCCC-----CHHHHHHHHHHHHhCCCceEECCCCCcC-------------------HHHHHHHHHHHHHhC-
Confidence 799999655432 112233456777765 45677776511 334445555555543
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc-cccccccccccc---CCCCC-CccchhcCChhhhh-cc
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW-DGYDTFYTEKYM---GLPSE-DPVGYEYSSVMHHV-HK 708 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~-~~ 708 (776)
..+.+.|+|.||||+.|.+++.+++ +++ |+++|.... ..+.....+... +.... ....+.....+... ..
T Consensus 57 -~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~ 132 (187)
T PF05728_consen 57 -KPENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPT 132 (187)
T ss_pred -CCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccC
Confidence 2345999999999999999999875 344 666776553 222221111100 00000 00111111111111 12
Q ss_pred CCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 709 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 709 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
-..++++++++.|+++++..+...++. +..++.+|++|.+. +.++....+.+|+
T Consensus 133 ~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~---~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 133 NPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQ---DFEEYLPQIIAFL 186 (187)
T ss_pred CCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCc---cHHHHHHHHHHhh
Confidence 235899999999999998666555442 24556788899884 4677788888887
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=120.37 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=139.3
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
+-++|||||+++|.-+++ .-|.+|..+..-...++.......+..++.. ..+.+.+...+.+..|+|
T Consensus 73 ~CVR~S~dG~~lAsGSDD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-----~~~l~~H~~DV~Dv~Wsp--- 139 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGSDD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKV-----VSILRGHDSDVLDVNWSP--- 139 (942)
T ss_pred eEEEECCCCCeEeeccCc-----ceEEEeeecccCCcccccccccccccceeeE-----EEEEecCCCccceeccCC---
Confidence 567899999999976553 3466666653111111110000000011100 001122345688999999
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCC-CceeEEeeCCCCCce
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLI-NEQRQLTHGANGNTV 214 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~-g~~~~lt~~~~~~~~ 214 (776)
|+..++.. .++.|.+||..+.+.. ....+....+....|-|-|+++|..+++ -|-+|+..+ |-.+.++..-+....
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~-~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELL-KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CccEEEEecccceEEEEccccceee-eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 99999976 7889999999998665 4433333458899999999999999875 477777443 445555432111100
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEe-cCC---------CCCeEEEeecCCCCCCCCCcceecCC-----C--
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV-DSS---------EIPRFRIMHQGKSSVGSEAQEDHAYP-----F-- 277 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-- 277 (776)
. -.+..+.|||||+.|+.... +++ +.+...+.+.|+.. ...-++|- .
T Consensus 219 ~------------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~----p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 219 T------------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA----PVEVVRFNPKLFERNN 282 (942)
T ss_pred c------------ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC----ceEEEEeChHHhcccc
Confidence 0 01457889999999987542 221 23344455555553 11111111 1
Q ss_pred -CCCCC-------------CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEE
Q 004067 278 -AGASN-------------VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 278 -~g~~~-------------~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 343 (776)
.|... -...|-||.....++-.+-. .-....+.+++|||||-.|+..+. ++.|+.
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~-------~lf~~SI~DmsWspdG~~LfacS~----DGtV~~ 351 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH-------NLFNKSIVDMSWSPDGFSLFACSL----DGTVAL 351 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-------hhhcCceeeeeEcCCCCeEEEEec----CCeEEE
Confidence 11110 01124444443322211100 112457889999999987777763 445666
Q ss_pred EECCCCc
Q 004067 344 FDIKTGQ 350 (776)
Q Consensus 344 ~d~~~g~ 350 (776)
+..+.++
T Consensus 352 i~Fee~E 358 (942)
T KOG0973|consen 352 IHFEEKE 358 (942)
T ss_pred EEcchHH
Confidence 6665443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=104.15 Aligned_cols=277 Identities=11% Similarity=0.108 Sum_probs=170.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|+|+|++|..-+. . +.+-+|+..+-.-+.+. ..+...|....||+
T Consensus 99 V~~v~WtPeGRRLltgs~-S----GEFtLWNg~~fnFEtil-----------------------QaHDs~Vr~m~ws~-- 148 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQ-S----GEFTLWNGTSFNFETIL-----------------------QAHDSPVRTMKWSH-- 148 (464)
T ss_pred eeeEEEcCCCceeEeecc-c----ccEEEecCceeeHHHHh-----------------------hhhcccceeEEEcc--
Confidence 468899999999985444 2 34666775333222221 12334688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCc-eeEEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINE-QRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~-~~~lt~~~~~~~ 213 (776)
+|.+++.. .++.|..|+..-...+ .+.......+..++|||...+.+-.++ +.|-+||..-.. .++| ....
T Consensus 149 -~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHg--- 222 (464)
T KOG0284|consen 149 -NGTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHG--- 222 (464)
T ss_pred -CCCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCC---
Confidence 99999987 5677889988776666 444444335889999996665555554 568888877554 3444 3222
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
|. +..+.|.|.-..|+..+.| .-+.+||..
T Consensus 223 -------wd-------VksvdWHP~kgLiasgskD------------------------------------nlVKlWDpr 252 (464)
T KOG0284|consen 223 -------WD-------VKSVDWHPTKGLIASGSKD------------------------------------NLVKLWDPR 252 (464)
T ss_pred -------CC-------cceeccCCccceeEEccCC------------------------------------ceeEeecCC
Confidence 11 5678899976655544432 247899999
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-CceEEEEEeccCceeecccccccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~~~~~~~~ 372 (776)
+|....- +-.+...+..+.|+|+|.+|+..+ .+..+.++|+.+ .+.+..-.+....+.. .|.|.
T Consensus 253 Sg~cl~t--------lh~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~---~WhP~ 317 (464)
T KOG0284|consen 253 SGSCLAT--------LHGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIRTMKELFTYRGHKKDVTSL---TWHPL 317 (464)
T ss_pred Ccchhhh--------hhhccceEEEEEEcCCCCeeEEcc----CCceEEEEehhHhHHHHHhhcchhhheee---ccccc
Confidence 8875332 145667889999999998887665 556788999874 2233333333332221 12332
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCceeec-ccc-CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITE-GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~-~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
-. +++.+...+| .|+.|.+...++.. +.. ++..+.++. |.|=|- |+.+++.+.. ...|.-+.
T Consensus 318 ~~-------~lftsgg~Dg--svvh~~v~~~~p~~~i~~AHd~~iwsl~-~hPlGh-il~tgsnd~t--~rfw~r~r 381 (464)
T KOG0284|consen 318 NE-------SLFTSGGSDG--SVVHWVVGLEEPLGEIPPAHDGEIWSLA-YHPLGH-ILATGSNDRT--VRFWTRNR 381 (464)
T ss_pred cc-------cceeeccCCC--ceEEEeccccccccCCCcccccceeeee-ccccce-eEeecCCCcc--eeeeccCC
Confidence 21 1333333455 66667665433322 222 244566654 888876 5666555443 67777765
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-09 Score=111.52 Aligned_cols=195 Identities=11% Similarity=0.078 Sum_probs=145.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.+.+||||-+.|.--+++ ..+.+|.+++-....+.. .+...+-...|+|
T Consensus 454 Vyg~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~-----------------------GH~~PVwdV~F~P-- 503 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYK-----------------------GHLAPVWDVQFAP-- 503 (707)
T ss_pred eeeeeecccccceeeccCC-----cceeeeecccceeEEEec-----------------------CCCcceeeEEecC--
Confidence 6788999999999855442 468888988776544443 1124566788999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
-|-++|.. .|..--+|..+...+. ++..+.-..+....|.|++.++|--+.. -+.+||+.+|...++..+..
T Consensus 504 -~GyYFatas~D~tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~---- 577 (707)
T KOG0263|consen 504 -RGYYFATASHDQTARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK---- 577 (707)
T ss_pred -CceEEEecCCCceeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC----
Confidence 89888876 4555667777776666 5555555568889999999998887544 59999999999888865432
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+++.++++||+|++|+....+ ..|.+||+.+
T Consensus 578 -------------~~V~al~~Sp~Gr~LaSg~ed------------------------------------~~I~iWDl~~ 608 (707)
T KOG0263|consen 578 -------------GPVTALAFSPCGRYLASGDED------------------------------------GLIKIWDLAN 608 (707)
T ss_pred -------------CceEEEEEcCCCceEeecccC------------------------------------CcEEEEEcCC
Confidence 236689999999999876533 4589999999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
|+.... +.++.+.+..++||.||.+|+... .+..|.+||+..
T Consensus 609 ~~~v~~--------l~~Ht~ti~SlsFS~dg~vLasgg----~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 609 GSLVKQ--------LKGHTGTIYSLSFSRDGNVLASGG----ADNSVRLWDLTK 650 (707)
T ss_pred Ccchhh--------hhcccCceeEEEEecCCCEEEecC----CCCeEEEEEchh
Confidence 876543 256778899999999999887665 566788899754
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=106.62 Aligned_cols=244 Identities=15% Similarity=0.128 Sum_probs=147.1
Q ss_pred CCCceEEEEEcC---CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccc-------ccccchhhhHHHHhCCcE
Q 004067 521 LEPPDIVQIQAN---DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDS-------WINTVDMRAQYLRSKGIL 590 (776)
Q Consensus 521 ~~~~~~~~~~~~---dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~-------~~~~~~~~~~~l~~~G~~ 590 (776)
+...+.+.++.. ++..+.+..|.-.+. .+-.+||++|+..++..+... |...+-.--+.+.-..|-
T Consensus 19 ~~~~~~l~le~G~~l~~~~vay~T~Gtln~----~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~f 94 (368)
T COG2021 19 LFAIGPLTLESGGVLSDARVAYETYGTLNA----EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFF 94 (368)
T ss_pred eeccCceeecCCCcccCcEEEEEecccccc----cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceE
Confidence 334444555541 234566666665443 355799999997776554442 322111112234456699
Q ss_pred EEEECCCCCC-CC-chhhhhhhh----hccCCccHHHHHHHHHHHHHcCCCCCCcEE-EEeechHHHHHHHHHhhCCCce
Q 004067 591 VWKLDNRGTA-RR-GLKFEASIK----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVF 663 (776)
Q Consensus 591 v~~~d~rg~g-~~-~~~~~~~~~----~~~~~~~~~D~~~~i~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~~~~~ 663 (776)
|++.|..|+. ++ +.......- ..+....+.|.+++-+.|+++-.|. ++. ++|.||||+.++.++..+|+++
T Consensus 95 vIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~--~l~avvGgSmGGMqaleWa~~yPd~V 172 (368)
T COG2021 95 VICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRDMVRAQRLLLDALGIK--KLAAVVGGSMGGMQALEWAIRYPDRV 172 (368)
T ss_pred EEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHHHHHHHHHHHHHhcCcc--eEeeeeccChHHHHHHHHHHhChHHH
Confidence 9999998864 33 222111111 1233457889999998888876554 555 9999999999999999999999
Q ss_pred EEEEEcCCCCC---------------------cc---ccc----------------------ccccccccC----CC---
Q 004067 664 QCAVSGAPVTS---------------------WD---GYD----------------------TFYTEKYMG----LP--- 690 (776)
Q Consensus 664 ~~~v~~~~~~~---------------------~~---~~~----------------------~~~~~~~~~----~~--- 690 (776)
..++.++...- |. ++. ..+.+++.. .+
T Consensus 173 ~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~ 252 (368)
T COG2021 173 RRAIPIATAARLSAQNIAFNEVQRQAIEADPDWNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRG 252 (368)
T ss_pred hhhheecccccCCHHHHHHHHHHHHHHHhCCCccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCC
Confidence 88877665321 10 000 001111111 00
Q ss_pred ---CCCccc------------h------------hc-------CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHH
Q 004067 691 ---SEDPVG------------Y------------EY-------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 736 (776)
Q Consensus 691 ---~~~~~~------------~------------~~-------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l 736 (776)
....+. + .. .+....+++++.|+|++.-+.|...|++...++.+.|
T Consensus 253 ~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L 332 (368)
T COG2021 253 GGVRFAVESYLDYQGDKFVARFDANSYLYLTRALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEAL 332 (368)
T ss_pred CchhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhc
Confidence 000000 0 01 1223347788999999999999999999999999999
Q ss_pred HHCCCCeEEEEe-cCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 737 VAARKPYEILIF-PDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 737 ~~~~~~~~~~~~-~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
...+. ++++ ...||.- +......+...+.+||+.
T Consensus 333 ~~~~~---~~~i~S~~GHDa-FL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 333 PAAGA---LREIDSPYGHDA-FLVESEAVGPLIRKFLAL 367 (368)
T ss_pred cccCc---eEEecCCCCchh-hhcchhhhhHHHHHHhhc
Confidence 76655 4333 4568864 333445566888888764
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=127.83 Aligned_cols=221 Identities=14% Similarity=0.057 Sum_probs=129.1
Q ss_pred EEEEEEEcCCCCCCC-CCCceEEEEEcCCCCccccccccccc-chhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhc
Q 004067 536 VLYGALYKPDESRYG-PPPYKTLISVYGGPCVQLVCDSWINT-VDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 613 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~-~~~~p~vl~~HG~~~~~~~~~~~~~~-~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~ 613 (776)
.+..+.|.|.....+ ++..|.||++||.+.... .|... -..+..+|.++||.|+++|+ |.++.... .
T Consensus 48 ~~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~---~~d~~~~~s~v~~L~~~g~~v~~~d~---G~~~~~~~---~-- 116 (994)
T PRK07868 48 MYRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSAD---MWDVTRDDGAVGILHRAGLDPWVIDF---GSPDKVEG---G-- 116 (994)
T ss_pred cEEEEEeCCCCccccccCCCCcEEEECCCCCCcc---ceecCCcccHHHHHHHCCCEEEEEcC---CCCChhHc---C--
Confidence 366667777653111 123478999999766544 23211 01136789999999999995 33332110 0
Q ss_pred cCCccHHH----HHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCccc-----------
Q 004067 614 CGRIDAED----QLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG----------- 677 (776)
Q Consensus 614 ~~~~~~~D----~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~~----------- 677 (776)
....+.| +.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+++.+...++..
T Consensus 117 -~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~ 192 (994)
T PRK07868 117 -MERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLA 192 (994)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhh
Confidence 0112333 334444443332 24799999999999998888755 557888776443322100
Q ss_pred -c---------------ccc-----c--------cccc------cCCC-----------------C-CC---------cc
Q 004067 678 -Y---------------DTF-----Y--------TEKY------MGLP-----------------S-ED---------PV 695 (776)
Q Consensus 678 -~---------------~~~-----~--------~~~~------~~~~-----------------~-~~---------~~ 695 (776)
. ... + ...+ +..+ | .. ..
T Consensus 193 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~ 272 (994)
T PRK07868 193 AAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQ 272 (994)
T ss_pred hcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHH
Confidence 0 000 0 0000 0000 0 00 00
Q ss_pred chhcCChh----------hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE-EEecCCCCCC--CCCCcHH
Q 004067 696 GYEYSSVM----------HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI-LIFPDERHMP--RRHRDRI 762 (776)
Q Consensus 696 ~~~~~~~~----------~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~-~~~~~~~H~~--~~~~~~~ 762 (776)
.+..+... ..+.++++|+|+++|+.|.++|+..+..+.+.+ ...++ .+++++||.. .......
T Consensus 273 ~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i----~~a~~~~~~~~~GH~g~~~g~~a~~ 348 (994)
T PRK07868 273 FIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAA----PNAEVYESLIRAGHFGLVVGSRAAQ 348 (994)
T ss_pred HHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCeEEEEeCCCCCEeeeechhhhh
Confidence 00000000 135788899999999999999999998887765 33455 5778999974 3456678
Q ss_pred HHHHHHHHHHHHh
Q 004067 763 YMEERIWEFIERT 775 (776)
Q Consensus 763 ~~~~~~~~fl~~~ 775 (776)
+++..+.+||.++
T Consensus 349 ~~wp~i~~wl~~~ 361 (994)
T PRK07868 349 QTWPTVADWVKWL 361 (994)
T ss_pred hhChHHHHHHHHh
Confidence 8999999999875
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-08 Score=101.84 Aligned_cols=291 Identities=11% Similarity=0.056 Sum_probs=179.9
Q ss_pred ccChHhhhcCCCCCCcC-CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHH
Q 004067 40 LFSLEEIVQSPLPGYVA-PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRE 118 (776)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~ 118 (776)
..+.+.+...|.+..+- ..-+.||..+ .+|-... ..||+|+..+++...|.+...
T Consensus 162 ~~~p~rvLDaP~l~dDfY~nlldWss~n-~laValg------~~vylW~~~s~~v~~l~~~~~----------------- 217 (484)
T KOG0305|consen 162 PQTPYRVLDAPGLQDDFYLNLLDWSSAN-VLAVALG------QSVYLWSASSGSVTELCSFGE----------------- 217 (484)
T ss_pred cCChhhhccCCcccccHhhhHhhcccCC-eEEEEec------ceEEEEecCCCceEEeEecCC-----------------
Confidence 34455666655543221 2345799443 4553322 469999999999888886421
Q ss_pred HHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEe
Q 004067 119 RLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLN 196 (776)
Q Consensus 119 ~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~ 196 (776)
..+.++.|++ +|+.|++. .++.+.+||....+....+......++...+|. +..+.-.+ ++.|..+|
T Consensus 218 ------~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 218 ------ELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHD 286 (484)
T ss_pred ------CceEEEEECC---CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEE
Confidence 4688999999 99999997 778999999988776634444245568889998 32333322 34566666
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+...+..--+..+ .... +-++.|++|++++|-...|
T Consensus 287 vR~~~~~~~~~~~-H~qe---------------VCgLkws~d~~~lASGgnD---------------------------- 322 (484)
T KOG0305|consen 287 VRISQHVVSTLQG-HRQE---------------VCGLKWSPDGNQLASGGND---------------------------- 322 (484)
T ss_pred Eecchhhhhhhhc-ccce---------------eeeeEECCCCCeeccCCCc----------------------------
Confidence 6554321111111 1112 3367899999998864432
Q ss_pred CCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..+++||..+.+.. .+ ..+...+..++|+|=-+ .|+.. .+..+..|..||..+|+....
T Consensus 323 --------N~~~Iwd~~~~~p~~~~---------~~H~aAVKA~awcP~q~~lLAsG--GGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 323 --------NVVFIWDGLSPEPKFTF---------TEHTAAVKALAWCPWQSGLLATG--GGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred --------cceEeccCCCccccEEE---------eccceeeeEeeeCCCccCceEEc--CCCcccEEEEEEcCCCcEecc
Confidence 45788988444332 22 46777888999999544 55433 355788999999998875432
Q ss_pred EEeccC----ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC-ceeeccccCCeEEEEEEeecCCCcEEE
Q 004067 355 LVEELD----SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCLGPITEGDWMVEQIVGVNEASGQVY 429 (776)
Q Consensus 355 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~~~~lt~~~~~~~~~~~~s~dg~~i~ 429 (776)
.....- .|. + ..+.++.+. .....+|-+|.... .....++.+...|..+. +||||..|+
T Consensus 384 vdtgsQVcsL~Ws-------k-------~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la-~SPdg~~i~ 447 (484)
T KOG0305|consen 384 VDTGSQVCSLIWS-------K-------KYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLA-LSPDGETIV 447 (484)
T ss_pred cccCCceeeEEEc-------C-------CCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEE-ECCCCCEEE
Confidence 221111 221 1 123344433 22233556665333 34566777777777665 999999877
Q ss_pred EEEccCCCceeeEEEEEe
Q 004067 430 FTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~ 447 (776)
..+.++. +++|.+--
T Consensus 448 t~a~DET---lrfw~~f~ 462 (484)
T KOG0305|consen 448 TGAADET---LRFWNLFD 462 (484)
T ss_pred EecccCc---EEeccccC
Confidence 6666543 78888763
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=92.97 Aligned_cols=211 Identities=17% Similarity=0.208 Sum_probs=115.6
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC-CCCch
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARRGL 604 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~-g~~~~ 604 (776)
...+...+|.++..|.-.|++. .+++.+.|++..|...... .+..++.+|+.+||+|+-+|.--| |.|..
T Consensus 4 dhvi~~~~~~~I~vwet~P~~~--~~~~~~tiliA~Gf~rrmd-------h~agLA~YL~~NGFhViRyDsl~HvGlSsG 74 (294)
T PF02273_consen 4 DHVIRLEDGRQIRVWETRPKNN--EPKRNNTILIAPGFARRMD-------HFAGLAEYLSANGFHVIRYDSLNHVGLSSG 74 (294)
T ss_dssp EEEEEETTTEEEEEEEE---TT--S---S-EEEEE-TT-GGGG-------GGHHHHHHHHTTT--EEEE---B-------
T ss_pred cceeEcCCCCEEEEeccCCCCC--CcccCCeEEEecchhHHHH-------HHHHHHHHHhhCCeEEEeccccccccCCCC
Confidence 3455667899999999999874 3456789999888543321 455678999999999999997654 43332
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-ccccc
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-DTFYT 683 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-~~~~~ 683 (776)
.-.+..... ...++..+++|+.+.+ ..+++++.-|.-|-+|+..+++ .+ ..-+|...++.+++.. ...+.
T Consensus 75 ~I~eftms~----g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~ 145 (294)
T PF02273_consen 75 DINEFTMSI----GKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALG 145 (294)
T ss_dssp ------HHH----HHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHS
T ss_pred ChhhcchHH----hHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhc
Confidence 221111111 2578999999999764 3579999999999999999995 44 4556666688886532 11122
Q ss_pred ccccCCCCC----Cc---------cc---------hh-cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 684 EKYMGLPSE----DP---------VG---------YE-YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 684 ~~~~~~~~~----~~---------~~---------~~-~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
..|++.+.. +. +. |. ..+....+.++.+|++.+++.+|..|......++...+. .
T Consensus 146 ~Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~--s 223 (294)
T PF02273_consen 146 YDYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNIN--S 223 (294)
T ss_dssp S-GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-T--T
T ss_pred cchhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcC--C
Confidence 222221111 00 00 10 113345677888999999999999999888888877662 3
Q ss_pred CCeEEEEecCCCCCCC
Q 004067 741 KPYEILIFPDERHMPR 756 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~ 756 (776)
..+++...+|+.|...
T Consensus 224 ~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 224 NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp --EEEEEETT-SS-TT
T ss_pred CceeEEEecCccchhh
Confidence 5688999999999873
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-08 Score=105.45 Aligned_cols=217 Identities=9% Similarity=0.071 Sum_probs=129.2
Q ss_pred CCceeEcCC-CCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSPD-DNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~SpD-G~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+..++|+|+ ++.||-.+. ...|.+|++.++.. ..+... . ..+ ..+...+....|+
T Consensus 77 V~~lafsP~~~~lLASgS~-----DgtIrIWDi~t~~~~~~~i~~p-~-----~~L-----------~gH~~~V~sVaf~ 134 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSE-----DLTIRVWEIPHNDESVKEIKDP-Q-----CIL-----------KGHKKKISIIDWN 134 (568)
T ss_pred EEEEEEcCCCCCEEEEEeC-----CCeEEEEECCCCCccccccccc-e-----EEe-----------ecCCCcEEEEEEC
Confidence 588999997 777775443 24699999975421 110000 0 000 0112468899999
Q ss_pred ecCCCceEEEE--eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCC
Q 004067 134 KTSSKKKIIMV--PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 134 p~~~dg~~l~~--~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~ 210 (776)
| ++..++. ..++.|.+||+.+++....+.. . ..+..+.|+|||+.|+... ++.|.+||+.+++...-.....
T Consensus 135 P---~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 135 P---MNYYIMCSSGFDSFVNIWDIENEKRAFQINM-P-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred C---CCCeEEEEEeCCCeEEEEECCCCcEEEEEec-C-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 9 9987654 3688999999998876534432 2 2478899999999998775 5679999999887643222211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
+..... . +....|++|++.|+....+... ..+|.+|
T Consensus 210 g~~~s~--~----------v~~~~fs~d~~~IlTtG~d~~~--------------------------------~R~VkLW 245 (568)
T PTZ00420 210 GGKNTK--N----------IWIDGLGGDDNYILSTGFSKNN--------------------------------MREMKLW 245 (568)
T ss_pred CCceeE--E----------EEeeeEcCCCCEEEEEEcCCCC--------------------------------ccEEEEE
Confidence 100000 0 0012357999988876654321 1358999
Q ss_pred EcCC-CceE-EEEcccCCCCCCCCcceEEEEEeccC-CeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 291 SAAG-GPVS-WMDLQCGGTDQNYDEEYLARVNWMHG-NILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 291 d~~~-~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
|+.. ++.. .+... ...+ ...+.|.+| |.+++... ++..|++|++..+....+.+
T Consensus 246 Dlr~~~~pl~~~~ld-------~~~~-~L~p~~D~~tg~l~lsGk----GD~tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 246 DLKNTTSALVTMSID-------NASA-PLIPHYDESTGLIYLIGK----GDGNCRYYQHSLGSIRKVNE 302 (568)
T ss_pred ECCCCCCceEEEEec-------CCcc-ceEEeeeCCCCCEEEEEE----CCCeEEEEEccCCcEEeecc
Confidence 9874 3322 22221 1112 222444454 65544433 56679999998776656543
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-09 Score=104.67 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=113.8
Q ss_pred hhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC-CCCcEEEEeechHHHHHHHHHhh
Q 004067 580 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA-KVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 580 ~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i-d~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
+...+.++||+|+++||.|.|. .|...... ...+-|.+++.+.+.....+ ...+++++|||.||+.+++++..
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg~---~y~~~~~~---a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLGT---PYLNGRSE---AYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCCC---cccCcHhH---HHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 3566779999999999998876 33322111 12245555555555443222 34689999999999999887754
Q ss_pred ----CCCc---eEEEEEcCCCCCcccc--------------------ccccc------ccc-------------------
Q 004067 659 ----FPDV---FQCAVSGAPVTSWDGY--------------------DTFYT------EKY------------------- 686 (776)
Q Consensus 659 ----~~~~---~~~~v~~~~~~~~~~~--------------------~~~~~------~~~------------------- 686 (776)
-|++ +.+.++.+|..++..+ ...|. ..+
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 2554 6777777776653210 00000 000
Q ss_pred --cCCCCCC------------c---------cchhcCCh-hhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC-C
Q 004067 687 --MGLPSED------------P---------VGYEYSSV-MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR-K 741 (776)
Q Consensus 687 --~~~~~~~------------~---------~~~~~~~~-~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~ 741 (776)
....... . ..+.+.+. ...-..-+.|++|.||..|+++|+.....+++++++.| .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGA 251 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Confidence 0000000 0 00001010 00001114799999999999999999999999999999 7
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++++.+++.+|....... ....++||...
T Consensus 252 ~V~~~~~~~~~H~~~~~~~----~~~a~~Wl~~r 281 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAAFAS----APDALAWLDDR 281 (290)
T ss_pred CEEEEecCCCChhhhhhcC----cHHHHHHHHHH
Confidence 9999999999997532222 35666777654
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-07 Score=83.81 Aligned_cols=277 Identities=10% Similarity=0.103 Sum_probs=159.0
Q ss_pred CCceeEcCC-CCEEEEEeCCCCcCcceEEEEecCCCce---EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPD-DNLITYLLSPDHSLSRKVFSFDPKTCKQ---ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpD-G~~ia~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+-.++|+|- |..||--+. ...|.+|+..++.. +.+++. .+.+.+.+.+|
T Consensus 17 ~W~~awhp~~g~ilAscg~-----Dk~vriw~~~~~~s~~ck~vld~----------------------~hkrsVRsvAw 69 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGT-----DKAVRIWSTSSGDSWTCKTVLDD----------------------GHKRSVRSVAW 69 (312)
T ss_pred EEEEEeccCCceEEEeecC-----CceEEEEecCCCCcEEEEEeccc----------------------cchheeeeeee
Confidence 478999998 887764332 35799999885443 222220 12357899999
Q ss_pred eecCCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCce-eEEee
Q 004067 133 VKTSSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQ-RQLTH 207 (776)
Q Consensus 133 sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~-~~lt~ 207 (776)
|| .|+.|+.. -+...-+|.-..++-. ..|..++ ..+..++||++|.+||-.++. -+|+|..+.+.. .-+..
T Consensus 70 sp---~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE-nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 70 SP---HGRYLASASFDATVVIWKKEDGEFECVATLEGHE-NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred cC---CCcEEEEeeccceEEEeecCCCceeEEeeeeccc-cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 99 99999987 4556666665555433 2344333 358899999999999998875 589988775432 21111
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
-. ++..-+..+.|.|-...|+..+.|. .|
T Consensus 146 L~---------------~HtqDVK~V~WHPt~dlL~S~SYDn------------------------------------TI 174 (312)
T KOG0645|consen 146 LQ---------------EHTQDVKHVIWHPTEDLLFSCSYDN------------------------------------TI 174 (312)
T ss_pred ec---------------cccccccEEEEcCCcceeEEeccCC------------------------------------eE
Confidence 00 0011145778999777666555442 34
Q ss_pred EEEEcC-CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEE--EECCCCceEEEEEeccCceee
Q 004067 288 GVVSAA-GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK--FDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 288 ~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~--~d~~~g~~~~l~~~~~~~~~~ 364 (776)
.+|... .+.-..... +.++...+..+.|.++|..++..++.+ .-.||+ .++..-..+.+..
T Consensus 175 k~~~~~~dddW~c~~t------l~g~~~TVW~~~F~~~G~rl~s~sdD~--tv~Iw~~~~~~~~~~sr~~Y~-------- 238 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQT------LDGHENTVWSLAFDNIGSRLVSCSDDG--TVSIWRLYTDLSGMHSRALYD-------- 238 (312)
T ss_pred EEEeecCCCCeeEEEE------ecCccceEEEEEecCCCceEEEecCCc--ceEeeeeccCcchhcccceEe--------
Confidence 555444 222111111 145556788999999998888776433 223444 2222211122211
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEe--CCCceeecccc----CCeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHD--INGTCLGPITE----GDWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~--~~g~~~~~lt~----~~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
++|. ++++.+.-.++.-.||.-. +++.....+.+ ++..+..+ .|+|.++-++++...++.
T Consensus 239 -----------v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV-~w~p~~~~~L~s~~DDG~- 304 (312)
T KOG0645|consen 239 -----------VPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV-QWNPKVSNRLASGGDDGI- 304 (312)
T ss_pred -----------eeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE-EEcCCCCCceeecCCCce-
Confidence 1233 3344444444434444443 23333333332 23445555 499976667777777654
Q ss_pred eeeEEEEE
Q 004067 439 ESHLYCAK 446 (776)
Q Consensus 439 ~~~l~~~~ 446 (776)
+.+|.+.
T Consensus 305 -v~~W~l~ 311 (312)
T KOG0645|consen 305 -VNFWELE 311 (312)
T ss_pred -EEEEEec
Confidence 7787763
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-06 Score=88.77 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCCEEEEEeCCCC-cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 65 DDNLITYLLSPDH-SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 65 DG~~ia~~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
|+++ +|+.+... ....+|+++|.++++....... +..-.. ..|| ||+.|+
T Consensus 11 ~~~~-v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~------------------------G~~P~~-~~sp---Dg~~ly 61 (352)
T TIGR02658 11 DARR-VYVLDPGHFAATTQVYTIDGEAGRVLGMTDG------------------------GFLPNP-VVAS---DGSFFA 61 (352)
T ss_pred CCCE-EEEECCcccccCceEEEEECCCCEEEEEEEc------------------------cCCCce-eECC---CCCEEE
Confidence 5565 56665331 1126899999999876433321 111122 3888 999999
Q ss_pred EeCC-----------CcEEEEeCCCCccceecCCCCC------CCccCceeCCCCCEEEEEE---CCcEEEEecCCCcee
Q 004067 144 VPLP-----------DGIYFQDLSCSKPELKLSSSSC------SPVIDPHLSSDGTMIAFVR---DCELHVLNLLINEQR 203 (776)
Q Consensus 144 ~~~~-----------~~l~~~d~~~~~~~~~l~~~~~------~~~~~~~~SpDg~~la~~~---~~~l~~~~l~~g~~~ 203 (776)
.+.. ..|-++|+.+.+....+..++. ......++||||+.|.... ++.+-++|+++++..
T Consensus 62 va~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 62 HASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV 141 (352)
T ss_pred EEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE
Confidence 8733 5688999999988744443221 1134689999999876543 245999999998775
Q ss_pred EE
Q 004067 204 QL 205 (776)
Q Consensus 204 ~l 205 (776)
.-
T Consensus 142 ~e 143 (352)
T TIGR02658 142 RM 143 (352)
T ss_pred EE
Confidence 43
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-09 Score=103.64 Aligned_cols=207 Identities=19% Similarity=0.146 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCC-CCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG-TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg-~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
-+|||+-|....... .++...+++.|...||.++.+-++. ++++|.... ..+++|+.++|+||+...
T Consensus 34 ~~llfIGGLtDGl~t----vpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~ 101 (303)
T PF08538_consen 34 NALLFIGGLTDGLLT----VPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEK 101 (303)
T ss_dssp SEEEEE--TT--TT-----STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCCCC----CchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhh
Confidence 488999884332221 1234456777878899999999875 344442211 124889999999999873
Q ss_pred --CCCCCcEEEEeechHHHHHHHHHhhCC-----CceEEEEEcCCCCCcccccccccc---------------------c
Q 004067 634 --LAKVGHIGLYGWSYGGYLSAITLARFP-----DVFQCAVSGAPVTSWDGYDTFYTE---------------------K 685 (776)
Q Consensus 634 --~id~~~i~l~G~S~GG~~a~~~a~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~---------------------~ 685 (776)
.-..++|+|+|||-|..-++.++.... ..++++|+.+|+.|-..+.....+ .
T Consensus 102 ~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~ 181 (303)
T PF08538_consen 102 GGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDE 181 (303)
T ss_dssp ------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-
T ss_pred ccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCc
Confidence 125679999999999999999998642 568999999999885433221100 0
Q ss_pred cc----------CCCCCCc------------cch----hcCChhhhhccCCCcEEEEecCCCCccChH-HHHHHHHHHHH
Q 004067 686 YM----------GLPSEDP------------VGY----EYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVA 738 (776)
Q Consensus 686 ~~----------~~~~~~~------------~~~----~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~ 738 (776)
.+ ..|.... +.| .......-..++..|+|++.+.+|+.||.. .-+.+.++++.
T Consensus 182 ~lp~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~ 261 (303)
T PF08538_consen 182 ILPREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKA 261 (303)
T ss_dssp GG----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-----------------
T ss_pred eeeccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccc
Confidence 00 1111000 000 000111235677889999999999999874 33556666654
Q ss_pred CCC----CeEEEEecCCCCCCCCCCc---HHHHHHHHHHHHH
Q 004067 739 ARK----PYEILIFPDERHMPRRHRD---RIYMEERIWEFIE 773 (776)
Q Consensus 739 ~~~----~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~ 773 (776)
.-. ...-.++||++|.+..... .+.+.+++.+||+
T Consensus 262 a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 262 ATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccCC
Confidence 332 2235589999999865443 3467788888874
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.2e-09 Score=113.07 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=99.7
Q ss_pred CCCceeEcCCCCEEEEEeCC---CCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 56 APTSIGFSPDDNLITYLLSP---DHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
.+.++++||||++|||+... ...+..+||+++. ++..++++. +.....++|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~-------------------------g~~~t~PsW 404 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLE-------------------------GHSLTRPSW 404 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeec-------------------------CCCCCCceE
Confidence 45899999999999999841 1123569999997 455577764 234678999
Q ss_pred eecCCCceEEEEeCC-------------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEE---Ee
Q 004067 133 VKTSSKKKIIMVPLP-------------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHV---LN 196 (776)
Q Consensus 133 sp~~~dg~~l~~~~~-------------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~---~~ 196 (776)
|| ||++|+|..+ ++||++++++++.. . .... .+..++|||||++|||+..++||+ ..
T Consensus 405 sp---DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-~--~~~g-~Issl~wSpDG~RiA~i~~g~v~Va~Vvr 477 (591)
T PRK13616 405 SL---DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVA-S--RVPG-PISELQLSRDGVRAAMIIGGKVYLAVVEQ 477 (591)
T ss_pred CC---CCCceEEEecCcceEEEeccCCCceEEEEeccCchhh-h--ccCC-CcCeEEECCCCCEEEEEECCEEEEEEEEe
Confidence 99 9998888732 36888888888876 4 2222 488999999999999999999998 66
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
.++|+ +.|+.-.. ...+.. .....+.|.+|++ |+...
T Consensus 478 ~~~G~-~~l~~~~~---l~~~l~--------~~~~~l~W~~~~~-L~V~~ 514 (591)
T PRK13616 478 TEDGQ-YALTNPRE---VGPGLG--------DTAVSLDWRTGDS-LVVGR 514 (591)
T ss_pred CCCCc-eeecccEE---eecccC--------CccccceEecCCE-EEEEe
Confidence 66776 44422110 000000 0023678999998 55443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-07 Score=97.93 Aligned_cols=290 Identities=11% Similarity=0.081 Sum_probs=144.9
Q ss_pred CcEEEEeC--CCCccceecCC-CCCCCccCceeCCCCCEEEEEECC-----cEEEEec--CCCceeEEeeCCCCCceecC
Q 004067 148 DGIYFQDL--SCSKPELKLSS-SSCSPVIDPHLSSDGTMIAFVRDC-----ELHVLNL--LINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 148 ~~l~~~d~--~~~~~~~~l~~-~~~~~~~~~~~SpDg~~la~~~~~-----~l~~~~l--~~g~~~~lt~~~~~~~~~~~ 217 (776)
+.||.+.+ ++++.. .+.. ........+.++|+++.|..+... .|..+.+ ++|+.+.+.........
T Consensus 13 ~gI~~~~~d~~~g~l~-~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~--- 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLT-LVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS--- 88 (345)
T ss_dssp TEEEEEEEETTTTEEE-EEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC---
T ss_pred CcEEEEEEcCCCCCce-EeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC---
Confidence 45665555 566655 2221 122236778999999988777653 3544444 44666665432211101
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC-Cc
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GP 296 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~-~~ 296 (776)
.-.++.+|||+.|+...... ..+.+++++. |.
T Consensus 89 ------------p~~i~~~~~g~~l~vany~~-----------------------------------g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 89 ------------PCHIAVDPDGRFLYVANYGG-----------------------------------GSVSVFPLDDDGS 121 (345)
T ss_dssp ------------EEEEEECTTSSEEEEEETTT-----------------------------------TEEEEEEECTTSE
T ss_pred ------------cEEEEEecCCCEEEEEEccC-----------------------------------CeEEEEEccCCcc
Confidence 12567899999888765432 2345555554 44
Q ss_pred eEEEE----cc-cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee-ecccccc
Q 004067 297 VSWMD----LQ-CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV-NLHDCFT 370 (776)
Q Consensus 297 ~~~l~----~~-~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~-~~~~~~~ 370 (776)
+.... .. .++........+...+.|+|||++++.. +.+.+.-.+|.++..+++......-..+.-. ..+-.|+
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~ 200 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS 200 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc
Confidence 33221 00 0111112234456678999999977544 5555554455555455555442221111000 0001122
Q ss_pred cCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccc---cC--Ce---EEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 371 PLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT---EG--DW---MVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt---~~--~~---~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
| ++..+|.+.+.++.-.+|.++...+..+.+. .. .. ....-+.+||||++||++....+. +.+
T Consensus 201 p-------dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s--I~v 271 (345)
T PF10282_consen 201 P-------DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS--ISV 271 (345)
T ss_dssp T-------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE--EEE
T ss_pred C-------CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE--EEE
Confidence 2 2233455555566444444443355433221 10 11 012234589999998888766543 667
Q ss_pred EEEEeCCCCCCccccceeecCC-CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 443 YCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
|.++.. +|. +..+..+... .....+.++|||++|+......+. -.++.+|..+|..
T Consensus 272 f~~d~~-~g~--l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~-v~vf~~d~~tG~l 328 (345)
T PF10282_consen 272 FDLDPA-TGT--LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT-VSVFDIDPDTGKL 328 (345)
T ss_dssp EEECTT-TTT--EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE-EEEEEEETTTTEE
T ss_pred EEEecC-CCc--eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe-EEEEEEeCCCCcE
Confidence 777532 232 1233344432 336788999999999888766553 3444556667763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-07 Score=100.57 Aligned_cols=278 Identities=13% Similarity=0.075 Sum_probs=174.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+.++.+|.|...|+- .. ...|.+|+.++.+. +.++. .-+..-.|-|
T Consensus 376 VRsl~vS~d~~~~~S--ga----~~SikiWn~~t~kciRTi~~--------------------------~y~l~~~Fvp- 422 (888)
T KOG0306|consen 376 VRSLCVSSDSILLAS--GA----GESIKIWNRDTLKCIRTITC--------------------------GYILASKFVP- 422 (888)
T ss_pred eeEEEeecCceeeee--cC----CCcEEEEEccCcceeEEecc--------------------------ccEEEEEecC-
Confidence 588899999877762 21 24699999998776 44442 2345667888
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEec-----CCCceeE-Eee
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNL-----LINEQRQ-LTH 207 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l-----~~g~~~~-lt~ 207 (776)
.+++|+.. .+|.|-++|+.+....-.+..+++ -+..++.+||++..+-.+... +-.|+. ..|..+. |.-
T Consensus 423 --gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg-aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 423 --GDRYIVLGTKNGELQVFDLASASLVETIRAHDG-AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred --CCceEEEeccCCceEEEEeehhhhhhhhhcccc-ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 78888776 678899999998877623333444 488899999999988887542 333332 2333322 221
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.... ... +. .-+..+++||||+.|+..-.| ..+
T Consensus 500 ~~~r--tLe-l~--------ddvL~v~~Spdgk~LaVsLLd------------------------------------nTV 532 (888)
T KOG0306|consen 500 KHTR--TLE-LE--------DDVLCVSVSPDGKLLAVSLLD------------------------------------NTV 532 (888)
T ss_pred ccce--EEe-cc--------ccEEEEEEcCCCcEEEEEecc------------------------------------CeE
Confidence 1110 000 00 014478899999999876543 224
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EEEEeccCceeecc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVNLH 366 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~ 366 (776)
.+|-+++=+...- +.+|.-.+..+..|||++.++..+ .+..+.+|-++=|..+ .+..|.+..-..
T Consensus 533 kVyflDtlKFfls--------LYGHkLPV~smDIS~DSklivTgS----ADKnVKiWGLdFGDCHKS~fAHdDSvm~V-- 598 (888)
T KOG0306|consen 533 KVYFLDTLKFFLS--------LYGHKLPVLSMDISPDSKLIVTGS----ADKNVKIWGLDFGDCHKSFFAHDDSVMSV-- 598 (888)
T ss_pred EEEEecceeeeee--------ecccccceeEEeccCCcCeEEecc----CCCceEEeccccchhhhhhhcccCceeEE--
Confidence 4555555443321 256677788899999999887665 4556888888888875 455555442221
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
.|.| ...+.|++.+++ .+..||.+.= ..+.|..+...+.-.. .+|+|.+++ +++.+. .+.+|..
T Consensus 599 -~F~P--------~~~~FFt~gKD~--kvKqWDg~kFe~iq~L~~H~~ev~cLa-v~~~G~~vv-s~shD~--sIRlwE~ 663 (888)
T KOG0306|consen 599 -QFLP--------KTHLFFTCGKDG--KVKQWDGEKFEEIQKLDGHHSEVWCLA-VSPNGSFVV-SSSHDK--SIRLWER 663 (888)
T ss_pred -EEcc--------cceeEEEecCcc--eEEeechhhhhhheeeccchheeeeeE-EcCCCCeEE-eccCCc--eeEeeec
Confidence 2433 233677788888 8889985432 3566666666666554 889999644 443332 2677766
Q ss_pred E
Q 004067 446 K 446 (776)
Q Consensus 446 ~ 446 (776)
.
T Consensus 664 t 664 (888)
T KOG0306|consen 664 T 664 (888)
T ss_pred c
Confidence 4
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.8e-08 Score=95.14 Aligned_cols=283 Identities=15% Similarity=0.080 Sum_probs=165.1
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+++++.|.|.-..+....- ++ .-.||.+|-+... .|++. .+ ....+....|.|
T Consensus 215 ~I~sv~FHp~~plllvaG~-d~--~lrifqvDGk~N~--~lqS~--------~l-------------~~fPi~~a~f~p- 267 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGL-DG--TLRIFQVDGKVNP--KLQSI--------HL-------------EKFPIQKAEFAP- 267 (514)
T ss_pred CceEEEecCCCceEEEecC-CC--cEEEEEecCccCh--hheee--------ee-------------ccCccceeeecC-
Confidence 3588999998886654332 22 2345555543333 33321 00 124577788999
Q ss_pred CCCceEEEEe--CCCcEEEEeCCCCccceecCCCC---CCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee-EEeeC
Q 004067 136 SSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSS---CSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR-QLTHG 208 (776)
Q Consensus 136 ~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~---~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~-~lt~~ 208 (776)
+|+..+|. ...-+|.||+.+++.. ++.... ...+..+..|||++.||+... +.|++....|++.. .+..+
T Consensus 268 --~G~~~i~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie 344 (514)
T KOG2055|consen 268 --NGHSVIFTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE 344 (514)
T ss_pred --CCceEEEecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec
Confidence 99955544 3344889999999887 554322 223677899999999999876 47999988887642 22222
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
+. +..+.||.||+.|+..... .++|
T Consensus 345 G~-------------------v~~~~fsSdsk~l~~~~~~------------------------------------GeV~ 369 (514)
T KOG2055|consen 345 GV-------------------VSDFTFSSDSKELLASGGT------------------------------------GEVY 369 (514)
T ss_pred cE-------------------EeeEEEecCCcEEEEEcCC------------------------------------ceEE
Confidence 21 5578899999887754321 4689
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC----CCceEEEEEeccCceee
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK----TGQRKVILVEELDSWVN 364 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~----~g~~~~l~~~~~~~~~~ 364 (776)
+||+........-.. .+.-+-..++.|++|.+++..++. +-+-+||.+ ++.++++..-..-....
T Consensus 370 v~nl~~~~~~~rf~D-------~G~v~gts~~~S~ng~ylA~GS~~----GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVD-------DGSVHGTSLCISLNGSYLATGSDS----GIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred EEecCCcceEEEEee-------cCccceeeeeecCCCceEEeccCc----ceEEEeccchhhccCCCCchhhhhhhheee
Confidence 999998876555332 233355678889999987776643 334455532 34455443211111111
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccC---CeEEEEEEeecCCCcEEEEEEccCCCcee
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~---~~~~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
..-.|++ +..++.+..+.....|.++.+-.-. .+-.... -..+..+ .|||.|.++++-. .. .++
T Consensus 439 tsl~Fn~--------d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~-aFSP~sG~lAvGN-e~--grv 506 (514)
T KOG2055|consen 439 TSLQFNH--------DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM-AFSPNSGYLAVGN-EA--GRV 506 (514)
T ss_pred eeeeeCc--------chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE-EecCCCceEEeec-CC--Cce
Confidence 1112333 3346665555555577777643321 1111111 1224444 4999998766553 33 347
Q ss_pred eEEEEE
Q 004067 441 HLYCAK 446 (776)
Q Consensus 441 ~l~~~~ 446 (776)
+||++.
T Consensus 507 ~l~kL~ 512 (514)
T KOG2055|consen 507 HLFKLH 512 (514)
T ss_pred eeEeec
Confidence 899875
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.7e-08 Score=97.97 Aligned_cols=283 Identities=12% Similarity=0.099 Sum_probs=163.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.+++-|.|-+++ .|.....|..||.+|-....-. + ..|.+ .....+.+..||+
T Consensus 170 Vsal~~Dp~GaR~~-----sGs~Dy~v~~wDf~gMdas~~~-f-------r~l~P----------~E~h~i~sl~ys~-- 224 (641)
T KOG0772|consen 170 VSALAVDPSGARFV-----SGSLDYTVKFWDFQGMDASMRS-F-------RQLQP----------CETHQINSLQYSV-- 224 (641)
T ss_pred EEEeeecCCCceee-----eccccceEEEEecccccccchh-h-------hccCc----------ccccccceeeecC--
Confidence 56788899999888 4555678999999886542111 0 11111 1235688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecC------------CCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLS------------SSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINE 201 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~------------~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~ 201 (776)
.|..|++. ...+..++|-+|.+.. ..- .+.-..+..-.|.|+.+....+.. +.|.+|++....
T Consensus 225 -Tg~~iLvvsg~aqakl~DRdG~~~~-e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 225 -TGDQILVVSGSAQAKLLDRDGFEIV-EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred -CCCeEEEEecCcceeEEccCCceee-eeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 88888765 5566777787776544 221 122223556799999998777765 458888887543
Q ss_pred e-eEEe-eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 202 Q-RQLT-HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 202 ~-~~lt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
. +++. ..+.+.. .+ .+...+|+|||+.||-...|
T Consensus 303 ~q~qVik~k~~~g~---Rv----------~~tsC~~nrdg~~iAagc~D------------------------------- 338 (641)
T KOG0772|consen 303 SQLQVIKTKPAGGK---RV----------PVTSCAWNRDGKLIAAGCLD------------------------------- 338 (641)
T ss_pred hheeEEeeccCCCc---cc----------CceeeecCCCcchhhhcccC-------------------------------
Confidence 2 2222 2221100 01 14578899999998866543
Q ss_pred CCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCC--cceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-
Q 004067 280 ASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYD--EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL- 355 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~- 355 (776)
..|.+|+.-+..... +-.. ..| +..+..++||+||++|+... .+..|.+||+..-..-...
T Consensus 339 -----GSIQ~W~~~~~~v~p~~~vk------~AH~~g~~Itsi~FS~dg~~LlSRg----~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 339 -----GSIQIWDKGSRTVRPVMKVK------DAHLPGQDITSISFSYDGNYLLSRG----FDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred -----CceeeeecCCcccccceEee------eccCCCCceeEEEeccccchhhhcc----CCCceeeeeccccccchhhh
Confidence 235556642211110 1000 122 23688999999999887544 5667999999764332221
Q ss_pred EeccCceeecccccccCCCCccccCCeEEEEecc----CCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEE
Q 004067 356 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK----TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~ 430 (776)
..--..+-..+..|+| ++.++++.+. .+...|+.++..+=. ...|.-....|.... |.|.=.+|++
T Consensus 404 tgL~t~~~~tdc~FSP--------d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~-WhpkLNQi~~ 474 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSP--------DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCL-WHPKLNQIFA 474 (641)
T ss_pred cCCCccCCCCccccCC--------CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEe-ecchhhheee
Confidence 1111133333455666 4557776432 223379998865433 233333344455444 8887666555
Q ss_pred EEcc
Q 004067 431 TGTL 434 (776)
Q Consensus 431 ~~~~ 434 (776)
.+..
T Consensus 475 gsgd 478 (641)
T KOG0772|consen 475 GSGD 478 (641)
T ss_pred ecCC
Confidence 5443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.1e-07 Score=101.27 Aligned_cols=289 Identities=9% Similarity=0.075 Sum_probs=168.4
Q ss_pred CCCCEEEEEeCCCCcCcceEEEEec-CC---CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 64 PDDNLITYLLSPDHSLSRKVFSFDP-KT---CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 64 pDG~~ia~~~~~~~~~~~~l~~~~~-~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
..|.+++|.....+. ..-||.... ++ +.++.|.+... ++.+.. ...+..+.||| ||
T Consensus 79 ~~g~~~y~~~~~~g~-~~~~~~r~~~~~~~~~~~~~llD~n~-------~a~~~~---------~~~l~~~~~Sp---dg 138 (686)
T PRK10115 79 IKNGYRYRHIYEPGC-EYAIYQRQSAFSEEWDEWETLLDANK-------RAAHSE---------FYTLGGMAITP---DN 138 (686)
T ss_pred EECCEEEEEEEcCCC-ccEEEEEecCCCCCCCCCEEEEcchh-------hccCCC---------cEEEeEEEECC---CC
Confidence 457888888765554 355665543 22 33566665322 111100 12356788999 99
Q ss_pred eEEEEeCC------CcEEEEeCCCCccce-ecCCCCCCCccCceeCCCCCEEEEEEC-------CcEEEEecCCC--cee
Q 004067 140 KIIMVPLP------DGIYFQDLSCSKPEL-KLSSSSCSPVIDPHLSSDGTMIAFVRD-------CELHVLNLLIN--EQR 203 (776)
Q Consensus 140 ~~l~~~~~------~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~SpDg~~la~~~~-------~~l~~~~l~~g--~~~ 203 (776)
++|+|..+ .+|++.|+.+|+... .+.. . ...+.|++||+.|+|++. .+||++++.++ +.+
T Consensus 139 ~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~-~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~ 214 (686)
T PRK10115 139 TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---V-EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE 214 (686)
T ss_pred CEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---c-ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence 99999843 359999999887321 3322 1 245899999999999864 36999999999 556
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.|..+.... . | ....-+.|++.++........
T Consensus 215 lv~~e~~~~-~------~---------~~~~~s~d~~~l~i~~~~~~~-------------------------------- 246 (686)
T PRK10115 215 LVYEEKDDT-F------Y---------VSLHKTTSKHYVVIHLASATT-------------------------------- 246 (686)
T ss_pred EEEeeCCCC-E------E---------EEEEEcCCCCEEEEEEECCcc--------------------------------
Confidence 665543321 0 0 012234589888754432211
Q ss_pred eEEEEEEEc--CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-CCceEEEEEeccC
Q 004067 284 KVRLGVVSA--AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQRKVILVEELD 360 (776)
Q Consensus 284 ~~~l~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~ 360 (776)
..+++++. .+++...+.. ....... .+. ..+..+++.++.+.....|+.+++. .++.+.+..+...
T Consensus 247 -~~~~l~~~~~~~~~~~~~~~-------~~~~~~~-~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 315 (686)
T PRK10115 247 -SEVLLLDAELADAEPFVFLP-------RRKDHEY-SLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPREN 315 (686)
T ss_pred -ccEEEEECcCCCCCceEEEE-------CCCCCEE-EEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCC
Confidence 23556663 2343332211 1111112 221 2234677777777778889999987 4666777665322
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccc-cCCeEEEEEEeec--CCCcEEEEEE-ccCC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT-EGDWMVEQIVGVN--EASGQVYFTG-TLDG 436 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt-~~~~~~~~~~~~s--~dg~~i~~~~-~~~~ 436 (776)
.-+.. +.+..+.+++....+|...|++++++++....|+ .....+ ....++ ++++.+++.. +...
T Consensus 316 ~~i~~----------~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ss~~~ 384 (686)
T PRK10115 316 IMLEG----------FTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYV-TWIAYNPEPETSRLRYGYSSMTT 384 (686)
T ss_pred CEEEE----------EEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceE-eeecccCCCCCceEEEEEecCCC
Confidence 11111 1223556777788899999999998877777776 322222 222234 5555566554 4455
Q ss_pred CceeeEEEEEeC
Q 004067 437 PLESHLYCAKLY 448 (776)
Q Consensus 437 ~~~~~l~~~~~~ 448 (776)
| ..+|.+++.
T Consensus 385 P--~~~y~~d~~ 394 (686)
T PRK10115 385 P--DTLFELDMD 394 (686)
T ss_pred C--CEEEEEECC
Confidence 5 678888873
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-09 Score=99.15 Aligned_cols=238 Identities=14% Similarity=0.143 Sum_probs=159.3
Q ss_pred eeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCC-------CCCccCceeCCCCCEEEEEE-CCcEEEEecC
Q 004067 128 TRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSS-------CSPVIDPHLSSDGTMIAFVR-DCELHVLNLL 198 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~-------~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~ 198 (776)
....||| ||++|+.. .++-|-+||.-+|+.+..|.--. ...+....||.|...||-.+ ++.|-+|.+.
T Consensus 217 EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 217 ECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 3568999 99999976 67889999999998874443110 11256789999999998876 4689999999
Q ss_pred CCceeE-EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC
Q 004067 199 INEQRQ-LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277 (776)
Q Consensus 199 ~g~~~~-lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (776)
+|...+ +..... .| +..+.||.|+..|+..+.|
T Consensus 294 tG~ClRrFdrAHt-----kG------------vt~l~FSrD~SqiLS~sfD----------------------------- 327 (508)
T KOG0275|consen 294 TGQCLRRFDRAHT-----KG------------VTCLSFSRDNSQILSASFD----------------------------- 327 (508)
T ss_pred cchHHHHhhhhhc-----cC------------eeEEEEccCcchhhccccc-----------------------------
Confidence 997633 221111 11 4478899999999877654
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 278 AGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..+.+-.+++|+.-+- ..++..++....|++||..++..+ .+..+.+|+.++++.-.-+..
T Consensus 328 -------~tvRiHGlKSGK~LKE--------frGHsSyvn~a~ft~dG~~iisaS----sDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 328 -------QTVRIHGLKSGKCLKE--------FRGHSSYVNEATFTDDGHHIISAS----SDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred -------ceEEEeccccchhHHH--------hcCccccccceEEcCCCCeEEEec----CCccEEEecCcchhhhhhccC
Confidence 3356777777775332 267788999999999999888776 456799999998876443332
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeE---EEEEEeecCCCcEEEEEEcc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWM---VEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~---~~~~~~~s~dg~~i~~~~~~ 434 (776)
....+....-..-| ..+-.++ +.++.. .+|+++..|.-.+.++.+..+ .... ..||.|.+||..+-+
T Consensus 389 ~~~d~~vnsv~~~P------Knpeh~i-VCNrsn--tv~imn~qGQvVrsfsSGkREgGdFi~~-~lSpkGewiYcigED 458 (508)
T KOG0275|consen 389 LGTDYPVNSVILLP------KNPEHFI-VCNRSN--TVYIMNMQGQVVRSFSSGKREGGDFINA-ILSPKGEWIYCIGED 458 (508)
T ss_pred CCCcccceeEEEcC------CCCceEE-EEcCCC--eEEEEeccceEEeeeccCCccCCceEEE-EecCCCcEEEEEccC
Confidence 22211111001111 1122233 444544 899999999988988887422 2222 389999999888643
Q ss_pred CCCceeeEEEEEeC
Q 004067 435 DGPLESHLYCAKLY 448 (776)
Q Consensus 435 ~~~~~~~l~~~~~~ 448 (776)
..+|.....
T Consensus 459 -----~vlYCF~~~ 467 (508)
T KOG0275|consen 459 -----GVLYCFSVL 467 (508)
T ss_pred -----cEEEEEEee
Confidence 367777653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-07 Score=87.11 Aligned_cols=267 Identities=12% Similarity=0.058 Sum_probs=165.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+....|+|||..+| .+....+|++|+..+... ..+..| ...+-.+.|.+
T Consensus 50 I~~~~F~P~gs~~a-----SgG~Dr~I~LWnv~gdceN~~~lkgH------------------------sgAVM~l~~~~ 100 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFA-----SGGSDRAIVLWNVYGDCENFWVLKGH------------------------SGAVMELHGMR 100 (338)
T ss_pred EEEEEECCCCCeEe-----ecCCcceEEEEeccccccceeeeccc------------------------cceeEeeeecc
Confidence 57889999999998 344467899999876543 333332 24678899999
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
||..|+.. .|..++.||.++|+...+...... -+.....+.-|..++-... +.+.+||....+..++..+...
T Consensus 101 ---d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq 176 (338)
T KOG0265|consen 101 ---DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ 176 (338)
T ss_pred ---CCCEEEEecCCceEEEEecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchhhcccccee
Confidence 99999876 677899999999988744433222 2444455556666666553 4688999887665544333221
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
..++.|.-++..+.....| .+|.+||
T Consensus 177 ------------------ltAv~f~d~s~qv~sggId------------------------------------n~ikvWd 202 (338)
T KOG0265|consen 177 ------------------LTAVGFKDTSDQVISGGID------------------------------------NDIKVWD 202 (338)
T ss_pred ------------------EEEEEecccccceeecccc------------------------------------Cceeeec
Confidence 3467898888887765543 3478999
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC---Cce-EEEEEeccCcee--ec
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT---GQR-KVILVEELDSWV--NL 365 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~---g~~-~~l~~~~~~~~~--~~ 365 (776)
+..+....+. .++...+..++.||+|..+..-+ -+..+.+||..- +.. -.+.....-.+- -.
T Consensus 203 ~r~~d~~~~l--------sGh~DtIt~lsls~~gs~llsns----Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 203 LRKNDGLYTL--------SGHADTITGLSLSRYGSFLLSNS----MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred cccCcceEEe--------ecccCceeeEEeccCCCcccccc----ccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 9766654441 57788899999999998665332 245677888643 221 233332211110 00
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
...|+|. +..+-+.+ ....+|+||..+. -.-.|..+...|... .|.|....|.-.+.
T Consensus 271 ~cswsp~-------~~~i~ags---~dr~vyvwd~~~r~~lyklpGh~gsvn~~-~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 271 KCSWSPN-------GTKITAGS---ADRFVYVWDTTSRRILYKLPGHYGSVNEV-DFHPTEPIILSCSS 328 (338)
T ss_pred eeeccCC-------CCcccccc---ccceEEEeecccccEEEEcCCcceeEEEe-eecCCCcEEEEecc
Confidence 1122222 11232222 1238999998774 455666666666655 48998775444433
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-09 Score=104.50 Aligned_cols=222 Identities=14% Similarity=0.073 Sum_probs=126.2
Q ss_pred ceEEEEEcC-CCcEEEEEEEcCCCCCC--CCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 524 PDIVQIQAN-DGTVLYGALYKPDESRY--GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 524 ~~~~~~~~~-dg~~l~~~~~~P~~~~~--~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
...+++... .+.++...++.|..... ...++|+|++-||.+... ..+...++.+++.||+|..++.+|..
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~~-------~~f~~~A~~lAs~Gf~Va~~~hpgs~ 110 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSYV-------TGFAWLAEHLASYGFVVAAPDHPGSN 110 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCCc-------cchhhhHHHHhhCceEEEeccCCCcc
Confidence 445555554 36778899999876421 014789999999954431 24455789999999999999999863
Q ss_pred CCchhhhhhh----hhccCCccHHHHHHHHHHHHHc---C----CCCCCcEEEEeechHHHHHHHHHhhCCCc---e-EE
Q 004067 601 RRGLKFEASI----KHNCGRIDAEDQLTGAEWLIKQ---G----LAKVGHIGLYGWSYGGYLSAITLARFPDV---F-QC 665 (776)
Q Consensus 601 ~~~~~~~~~~----~~~~~~~~~~D~~~~i~~l~~~---~----~id~~~i~l~G~S~GG~~a~~~a~~~~~~---~-~~ 665 (776)
.-+.+-.... ..........|+...+++|.+. + .+|..+|+++|||+||+.++.++.-+.+. . .|
T Consensus 111 ~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C 190 (365)
T COG4188 111 AGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELDAEALLQHC 190 (365)
T ss_pred cccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccccHHHHHHHh
Confidence 2221111111 0001113467888888888876 4 47889999999999999999988654331 1 11
Q ss_pred E----EEc-CCCCCcccccc---cc---cccccCCCCCCccchh---cCCh---hhhhccCCCcEEEEecCCCCccChHH
Q 004067 666 A----VSG-APVTSWDGYDT---FY---TEKYMGLPSEDPVGYE---YSSV---MHHVHKMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 666 ~----v~~-~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~---~~~~---~~~~~~i~~P~lii~G~~D~~v~~~~ 728 (776)
. +.. .+..+-..... .+ ..+-...+.- ...+. ..+. ...+.+++.|++++.|..|...|+..
T Consensus 191 ~~~~~~~~~~~~~~~~~l~q~~av~~~~~~~~~rDpri-ravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~s~D~~aP~~~ 269 (365)
T COG4188 191 ESASRICLDPPGLNGRLLNQCAAVWLPRQAYDLRDPRI-RAVVAINPALGMIFGTTGLVKVTDPVLLAAGSADGFAPPVT 269 (365)
T ss_pred hhhhhcccCCCCcChhhhccccccccchhhhccccccc-eeeeeccCCcccccccccceeeecceeeecccccccCCccc
Confidence 1 000 01111000000 00 0000000000 00000 0000 12356778999999999999776642
Q ss_pred -HHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 729 -TARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 729 -~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
....+..| .+....+.+.|++.|.-
T Consensus 270 ~~~~~f~~l--~g~~k~~~~vp~a~h~s 295 (365)
T COG4188 270 EQIRPFGYL--PGALKYLRLVPGATHFS 295 (365)
T ss_pred ccccccccC--CcchhheeecCCCcccc
Confidence 23333333 23334678889999963
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-08 Score=94.31 Aligned_cols=128 Identities=18% Similarity=0.143 Sum_probs=89.1
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
+.+.+..|..+...-..-+.. +.+.+..+||-+||.||+.. ++..+...|.+.|++++.++|||+|......
T Consensus 9 ~k~~~~~~~~~~~~a~y~D~~-~~gs~~gTVv~~hGsPGSH~-------DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~ 80 (297)
T PF06342_consen 9 VKFQAENGKIVTVQAVYEDSL-PSGSPLGTVVAFHGSPGSHN-------DFKYIRPPLDEAGIRFIGINYPGFGFTPGYP 80 (297)
T ss_pred EEcccccCceEEEEEEEEecC-CCCCCceeEEEecCCCCCcc-------chhhhhhHHHHcCeEEEEeCCCCCCCCCCCc
Confidence 444555555444444443332 22245668999999999854 4566788999999999999999998765322
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
. -.+.-.+-...++.+.++-.++ +++.++|||.|+-.|+.++..+| ..++++++|+
T Consensus 81 ~-------~~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 81 D-------QQYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred c-------cccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 1 1123455666666677665555 78999999999999999999986 3466666654
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=108.62 Aligned_cols=200 Identities=14% Similarity=0.068 Sum_probs=119.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~ 616 (776)
+..+-|.|.... ...+.||+++..-.-..+.+- .+ -..++++|.++||.|+++|.+.-+...+.+. ...
T Consensus 201 ~eLiqY~P~te~---v~~~PLLIVPp~INK~YIlDL-~P-~~SlVr~lv~qG~~VflIsW~nP~~~~r~~~---ldD--- 269 (560)
T TIGR01839 201 LELIQYKPITEQ---QHARPLLVVPPQINKFYIFDL-SP-EKSFVQYCLKNQLQVFIISWRNPDKAHREWG---LST--- 269 (560)
T ss_pred eEEEEeCCCCCC---cCCCcEEEechhhhhhheeec-CC-cchHHHHHHHcCCeEEEEeCCCCChhhcCCC---HHH---
Confidence 556666775431 223455666763222111111 11 1235889999999999999986543322111 011
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHH----HHhhCCC-ceEEEEEcCCCCCccccc------------
Q 004067 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI----TLARFPD-VFQCAVSGAPVTSWDGYD------------ 679 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~----~a~~~~~-~~~~~v~~~~~~~~~~~~------------ 679 (776)
+ ++.+.++++.+++.. ...+|-++|+|+||.+++. +++++++ +++.++++....|+..-.
T Consensus 270 Y-v~~i~~Ald~V~~~t--G~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~ 346 (560)
T TIGR01839 270 Y-VDALKEAVDAVRAIT--GSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLE 346 (560)
T ss_pred H-HHHHHHHHHHHHHhc--CCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHH
Confidence 1 235666666666653 4568999999999999997 6777775 788888766555432100
Q ss_pred -------------------------------ccccccc-cCCCC--C-------------------CccchhcCChh---
Q 004067 680 -------------------------------TFYTEKY-MGLPS--E-------------------DPVGYEYSSVM--- 703 (776)
Q Consensus 680 -------------------------------~~~~~~~-~~~~~--~-------------------~~~~~~~~~~~--- 703 (776)
..+...| ++... . ....|..+...
T Consensus 347 ~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG 426 (560)
T TIGR01839 347 AAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPD 426 (560)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHHHHHhcCCCCCCC
Confidence 0000001 11000 0 01122222221
Q ss_pred --------hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 704 --------HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 704 --------~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
-.+.+|++|+|++.|..|.++|+..+..+.+.+ +.+.++++.++ ||.
T Consensus 427 ~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~---gs~~~fvl~~g-GHI 481 (560)
T TIGR01839 427 ALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLL---GGKRRFVLSNS-GHI 481 (560)
T ss_pred CEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHc---CCCeEEEecCC-Ccc
Confidence 136788999999999999999999999998876 44678877764 886
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-07 Score=91.26 Aligned_cols=244 Identities=14% Similarity=0.095 Sum_probs=162.0
Q ss_pred CeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCc-
Q 004067 126 GVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINE- 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~- 201 (776)
.+...-+.| +-- |++. .+..|++||..+|+....|...... +..++|+.-|+.||-.+.. .+.+|+.++-.
T Consensus 110 ~vt~v~~hp---~~~-~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 110 SVTRVIFHP---SEA-LVVSASEDATIKVFDTETGELERSLRGHTDS-VFDISFDASGKYLATCSSDLSAKLWDFDTFFR 184 (406)
T ss_pred ceeeeeecc---Cce-EEEEecCCceEEEEEccchhhhhhhhccccc-eeEEEEecCccEEEecCCccchhheeHHHHHH
Confidence 455666777 443 4444 5889999999999987455544443 7889999999998887765 37888877531
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
..+...+.+. + +..+.+-|-|..|+..+.|
T Consensus 185 c~ks~~gh~h-----~------------vS~V~f~P~gd~ilS~srD--------------------------------- 214 (406)
T KOG0295|consen 185 CIKSLIGHEH-----G------------VSSVFFLPLGDHILSCSRD--------------------------------- 214 (406)
T ss_pred HHHHhcCccc-----c------------eeeEEEEecCCeeeecccc---------------------------------
Confidence 1121122221 1 4467788999988876654
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELD 360 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~ 360 (776)
..|+.|+.++|.....- .++...+.-+...-||.+++..+ ++.+|.+|-.+++..+.+. .++.+
T Consensus 215 ---~tik~We~~tg~cv~t~--------~~h~ewvr~v~v~~DGti~As~s----~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 215 ---NTIKAWECDTGYCVKTF--------PGHSEWVRMVRVNQDGTIIASCS----NDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred ---cceeEEecccceeEEec--------cCchHhEEEEEecCCeeEEEecC----CCceEEEEEeccchhhhhhhccccc
Confidence 34789999999765442 45666888899999998777665 5677889998888554432 22222
Q ss_pred ----ceeecccccccCCCC--ccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 361 ----SWVNLHDCFTPLDKG--VTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 361 ----~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
.|..... + |.... -+-+++.++....+++ .|..||..++. .-.|..++..|++.. |+|.||+|+--+.
T Consensus 280 vEci~wap~~~-~-~~i~~at~~~~~~~~l~s~SrDk--tIk~wdv~tg~cL~tL~ghdnwVr~~a-f~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 280 VECIAWAPESS-Y-PSISEATGSTNGGQVLGSGSRDK--TIKIWDVSTGMCLFTLVGHDNWVRGVA-FSPGGKYILSCAD 354 (406)
T ss_pred eEEEEeccccc-C-cchhhccCCCCCccEEEeecccc--eEEEEeccCCeEEEEEecccceeeeeE-EcCCCeEEEEEec
Confidence 4543221 1 11111 1223345777777787 89999988775 556777777788776 9999997665554
Q ss_pred cCCCceeeEEEEEe
Q 004067 434 LDGPLESHLYCAKL 447 (776)
Q Consensus 434 ~~~~~~~~l~~~~~ 447 (776)
+ +. +++|.++.
T Consensus 355 D-kt--lrvwdl~~ 365 (406)
T KOG0295|consen 355 D-KT--LRVWDLKN 365 (406)
T ss_pred C-Cc--EEEEEecc
Confidence 3 33 78999884
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=96.80 Aligned_cols=189 Identities=12% Similarity=0.143 Sum_probs=120.7
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh------hhc------------
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI------KHN------------ 613 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~------~~~------------ 613 (776)
.|+|+|||-||.++++.+ +..++..||++||+|.++..|.+.....-+.... ...
T Consensus 116 ~k~PvvvFSHGLggsRt~-------YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ek 188 (399)
T KOG3847|consen 116 DKYPVVVFSHGLGGSRTL-------YSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEK 188 (399)
T ss_pred CCccEEEEecccccchhh-------HHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCce
Confidence 689999999998777653 2334778999999999999997643221111000 000
Q ss_pred -------cCCccHHHHHHHHHHHHHcC---------------------CCCCCcEEEEeechHHHHHHHHHhhCCCceEE
Q 004067 614 -------CGRIDAEDQLTGAEWLIKQG---------------------LAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 665 (776)
Q Consensus 614 -------~~~~~~~D~~~~i~~l~~~~---------------------~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~ 665 (776)
.-.....++..|+..+.+-. .+|..+++|+|||+||..++...+.+. .|+|
T Consensus 189 ef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~Frc 267 (399)
T KOG3847|consen 189 EFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRC 267 (399)
T ss_pred eEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceee
Confidence 00012566777777776531 245678999999999999988888655 4899
Q ss_pred EEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE
Q 004067 666 AVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 745 (776)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 745 (776)
+|+..+.. .|.+ ..+..+++.|+|+|.- .|.. ..+.....+++...+..-.+
T Consensus 268 aI~lD~WM---------------~Pl~----------~~~~~~arqP~~finv-~~fQ--~~en~~vmKki~~~n~g~~~ 319 (399)
T KOG3847|consen 268 AIALDAWM---------------FPLD----------QLQYSQARQPTLFINV-EDFQ--WNENLLVMKKIESQNEGNHV 319 (399)
T ss_pred eeeeeeee---------------cccc----------hhhhhhccCCeEEEEc-cccc--chhHHHHHHhhhCCCccceE
Confidence 99865431 1111 1245677889999983 3332 23455556666666666678
Q ss_pred EEecCCCCCC-CC-----------------C----CcHHHHHHHHHHHHHHhC
Q 004067 746 LIFPDERHMP-RR-----------------H----RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 746 ~~~~~~~H~~-~~-----------------~----~~~~~~~~~~~~fl~~~l 776 (776)
+++.|+=|.- .. + +......+..++||++|+
T Consensus 320 it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~ 372 (399)
T KOG3847|consen 320 ITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHL 372 (399)
T ss_pred EEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhh
Confidence 8898888862 10 1 223445667788888874
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-07 Score=85.27 Aligned_cols=269 Identities=10% Similarity=0.022 Sum_probs=146.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.++.|.-||.++|-.+.+ ..+-+|+++.. +.++.... +.++..+....|+|.+
T Consensus 23 v~Sv~wn~~g~~lasgs~d-----ktv~v~n~e~~--r~~~~~~~-------------------~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFD-----KTVSVWNLERD--RFRKELVY-------------------RGHTDSVDQLCWDPKH 76 (313)
T ss_pred ceEEEEcccCceeeecccC-----CceEEEEecch--hhhhhhcc-------------------cCCCcchhhheeCCCC
Confidence 4799999999999955443 35667777655 22222111 1223345677899844
Q ss_pred CCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
| ..++. ..+..|.+||...++.+ .-+....+ ..+..|||||+++++.... .|-.+|..+-++.. ..+..
T Consensus 77 ~--d~~atas~dk~ir~wd~r~~k~~-~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~--~~~~~--- 147 (313)
T KOG1407|consen 77 P--DLFATASGDKTIRIWDIRSGKCT-ARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVN--EEQFK--- 147 (313)
T ss_pred C--cceEEecCCceEEEEEeccCcEE-EEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceee--hhccc---
Confidence 4 22333 36678999999999888 33333333 5678999999999998765 46666655433221 11110
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
-+ ...+.|+.++. +.|....-+. ++|.-|. .=
T Consensus 148 -----~e--------~ne~~w~~~nd-~Fflt~GlG~---------------------------------v~ILsyp-sL 179 (313)
T KOG1407|consen 148 -----FE--------VNEISWNNSND-LFFLTNGLGC---------------------------------VEILSYP-SL 179 (313)
T ss_pred -----ce--------eeeeeecCCCC-EEEEecCCce---------------------------------EEEEecc-cc
Confidence 00 23466885454 6666532121 2222221 00
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLD 373 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~ 373 (776)
+.+..| ..+......+.|+|||++++..+ .+.-+-+||++.--. +.++...-+ .-.-.|+.
T Consensus 180 kpv~si---------~AH~snCicI~f~p~GryfA~Gs----ADAlvSLWD~~ELiC~R~isRldwp---VRTlSFS~-- 241 (313)
T KOG1407|consen 180 KPVQSI---------KAHPSNCICIEFDPDGRYFATGS----ADALVSLWDVDELICERCISRLDWP---VRTLSFSH-- 241 (313)
T ss_pred cccccc---------ccCCcceEEEEECCCCceEeecc----ccceeeccChhHhhhheeeccccCc---eEEEEecc--
Confidence 111112 44556677899999999887765 456678899865443 333332222 11112333
Q ss_pred CCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 374 KGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 374 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
+++.+....++- -|=+....+| +..+|.-. .. ..-++|.|.--.|+|.....+
T Consensus 242 ------dg~~lASaSEDh--~IDIA~vetGd~~~eI~~~-~~-t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 242 ------DGRMLASASEDH--FIDIAEVETGDRVWEIPCE-GP-TFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ------CcceeeccCccc--eEEeEecccCCeEEEeecc-CC-ceeEEecCCCceeeEEecCCC
Confidence 233444433433 2333344443 33333221 11 122359999888888876543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=100.37 Aligned_cols=276 Identities=9% Similarity=0.027 Sum_probs=173.4
Q ss_pred CCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCC-CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKT-CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
++.++|.| -|..|.- +.-...|++|++-+ +..-+.+. .+..++.+..|+.
T Consensus 217 vsai~~fp~~~hLlLS-----~gmD~~vklW~vy~~~~~lrtf~-----------------------gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLS-----GGMDGLVKLWNVYDDRRCLRTFK-----------------------GHRKPVRDASFNN 268 (503)
T ss_pred cchhhhccceeeEEEe-----cCCCceEEEEEEecCcceehhhh-----------------------cchhhhhhhhccc
Confidence 68899999 7766652 22235799999866 33222221 1234688899999
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
+|..++.. -+..|.+||+++|.....+..+. ......|.||++.+.++.. ..|..||..+|++.|-
T Consensus 269 ---~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe------ 337 (503)
T KOG0282|consen 269 ---CGTSFLSASFDRFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE------ 337 (503)
T ss_pred ---cCCeeeeeecceeeeeeccccceEEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH------
Confidence 99998876 67889999999999875555443 3677899999977777654 4688888888875431
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
++.+++-+..+.|-|+|++.+..+.+. .+.+|+
T Consensus 338 -----------Yd~hLg~i~~i~F~~~g~rFissSDdk------------------------------------s~riWe 370 (503)
T KOG0282|consen 338 -----------YDRHLGAILDITFVDEGRRFISSSDDK------------------------------------SVRIWE 370 (503)
T ss_pred -----------HHhhhhheeeeEEccCCceEeeeccCc------------------------------------cEEEEE
Confidence 223344466888999999988766432 356666
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC----CceEEEEEeccCceeeccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT----GQRKVILVEELDSWVNLHD 367 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~----g~~~~l~~~~~~~~~~~~~ 367 (776)
...+-...... .........+...|++++++--+ -+..|+++.+.- ...+....+...++. ..-
T Consensus 371 ~~~~v~ik~i~-------~~~~hsmP~~~~~P~~~~~~aQs----~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-~~v 438 (503)
T KOG0282|consen 371 NRIPVPIKNIA-------DPEMHTMPCLTLHPNGKWFAAQS----MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-CQV 438 (503)
T ss_pred cCCCccchhhc-------chhhccCcceecCCCCCeehhhc----cCceEEEEecccccccCHhhhhcceeccCce-eeE
Confidence 65554433322 22334455678889998655333 234455555322 112222333333332 123
Q ss_pred ccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
.|+| +++++...+.+| .++.||-.+-+ ...+..++..+.+.. |.|.....+++...++. +.+|
T Consensus 439 ~fSp--------DG~~l~SGdsdG--~v~~wdwkt~kl~~~lkah~~~ci~v~-wHP~e~Skvat~~w~G~--Ikiw 502 (503)
T KOG0282|consen 439 DFSP--------DGRTLCSGDSDG--KVNFWDWKTTKLVSKLKAHDQPCIGVD-WHPVEPSKVATCGWDGL--IKIW 502 (503)
T ss_pred EEcC--------CCCeEEeecCCc--cEEEeechhhhhhhccccCCcceEEEE-ecCCCcceeEecccCce--eEec
Confidence 3555 445677777788 88888866544 344555544455544 88888777888777754 5555
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-08 Score=102.69 Aligned_cols=246 Identities=16% Similarity=0.153 Sum_probs=159.1
Q ss_pred hhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccccccc--chhhhHHHHhCCcEEE
Q 004067 515 RIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT--VDMRAQYLRSKGILVW 592 (776)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~--~~~~~~~l~~~G~~v~ 592 (776)
.++..+. +.|...+++.||. +-...-.|... .+.|+|++.||...+.. .|... -..++-.|+++||.|+
T Consensus 40 ~i~~~gy-~~E~h~V~T~DgY-iL~lhRIp~~~----~~rp~Vll~HGLl~sS~---~Wv~n~p~~sLaf~LadaGYDVW 110 (403)
T KOG2624|consen 40 IIEKYGY-PVEEHEVTTEDGY-ILTLHRIPRGK----KKRPVVLLQHGLLASSS---SWVLNGPEQSLAFLLADAGYDVW 110 (403)
T ss_pred HHHHcCC-ceEEEEEEccCCe-EEEEeeecCCC----CCCCcEEEeeccccccc---cceecCccccHHHHHHHcCCcee
Confidence 3444444 7899999999998 44444445442 57899999999654432 23221 1234667899999999
Q ss_pred EECCCCCCCCchh----------hhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-
Q 004067 593 KLDNRGTARRGLK----------FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD- 661 (776)
Q Consensus 593 ~~d~rg~g~~~~~----------~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~- 661 (776)
.-+.||...|.+. |......++ ...|+.+.|+++.+.. ..+++..+|||.|+.....++..+|+
T Consensus 111 LgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em---~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~ 185 (403)
T KOG2624|consen 111 LGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEM---GTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEY 185 (403)
T ss_pred eecCcCcccchhhcccCCcCCcceeecchhhh---hhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchh
Confidence 9999996543221 111111222 3568999999998875 45799999999999999999988765
Q ss_pred --ceEEEEEcCCCCCcccc------------------ccccc-------------------c------------------
Q 004067 662 --VFQCAVSGAPVTSWDGY------------------DTFYT-------------------E------------------ 684 (776)
Q Consensus 662 --~~~~~v~~~~~~~~~~~------------------~~~~~-------------------~------------------ 684 (776)
+++..++.+|+..+... ...+. .
T Consensus 186 ~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G 265 (403)
T KOG2624|consen 186 NKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVG 265 (403)
T ss_pred hhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcC
Confidence 57888888887632200 00000 0
Q ss_pred ------------ccc-CCCC---------------------------CCccchh-cCChhhhhccCCCcEEEEecCCCCc
Q 004067 685 ------------KYM-GLPS---------------------------EDPVGYE-YSSVMHHVHKMKGKLLLVHGMIDEN 723 (776)
Q Consensus 685 ------------~~~-~~~~---------------------------~~~~~~~-~~~~~~~~~~i~~P~lii~G~~D~~ 723 (776)
.+. ..|. .+...|. ...|...+.+++.|+.+.+|.+|.+
T Consensus 266 ~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l 345 (403)
T KOG2624|consen 266 WNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWL 345 (403)
T ss_pred cchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCccc
Confidence 000 0000 0111111 1234556778889999999999999
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEecCCCCC-C-CCCCcHHHHHHHHHHHHHHh
Q 004067 724 VHFRHTARLINALVAARKPYEILIFPDERHM-P-RRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 724 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~-~-~~~~~~~~~~~~~~~fl~~~ 775 (776)
+.++....+...+..... .....+++-+|. | -....++++++.+++.++..
T Consensus 346 ~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 346 ADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLF 398 (403)
T ss_pred CCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhh
Confidence 999999988887754433 223336777885 2 24566889999999988753
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=92.17 Aligned_cols=153 Identities=18% Similarity=0.074 Sum_probs=90.8
Q ss_pred EEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCC
Q 004067 557 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAK 636 (776)
Q Consensus 557 vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id 636 (776)
|+++||..++.. +.|... +.+.+... +.|-.++.- ..++..-+..+.+.-...
T Consensus 1 v~IvhG~~~s~~--~HW~~w---l~~~l~~~-~~V~~~~~~---------------------~P~~~~W~~~l~~~i~~~ 53 (171)
T PF06821_consen 1 VLIVHGYGGSPP--DHWQPW---LERQLENS-VRVEQPDWD---------------------NPDLDEWVQALDQAIDAI 53 (171)
T ss_dssp EEEE--TTSSTT--TSTHHH---HHHHHTTS-EEEEEC--T---------------------S--HHHHHHHHHHCCHC-
T ss_pred CEEeCCCCCCCc--cHHHHH---HHHhCCCC-eEEeccccC---------------------CCCHHHHHHHHHHHHhhc
Confidence 688999766643 456432 35556555 777776651 112344444444431112
Q ss_pred CCcEEEEeechHHHHHHHHH-hhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEE
Q 004067 637 VGHIGLYGWSYGGYLSAITL-ARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLL 715 (776)
Q Consensus 637 ~~~i~l~G~S~GG~~a~~~a-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~li 715 (776)
.+.++++|||+|+..++.++ ......++++++++|...-... ..+ .......+. ....+..|.++
T Consensus 54 ~~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~---------~~~----~~~~~f~~~-p~~~l~~~~~v 119 (171)
T PF06821_consen 54 DEPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE---------PFP----PELDGFTPL-PRDPLPFPSIV 119 (171)
T ss_dssp TTTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH---------CCT----CGGCCCTTS-HCCHHHCCEEE
T ss_pred CCCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc---------chh----hhccccccC-cccccCCCeEE
Confidence 34699999999999999999 6678889999999998431000 000 000011111 11122356699
Q ss_pred EecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 716 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+.+++|+.+|+..+.++++.+ ..+++.++++||..
T Consensus 120 iaS~nDp~vp~~~a~~~A~~l-----~a~~~~~~~~GHf~ 154 (171)
T PF06821_consen 120 IASDNDPYVPFERAQRLAQRL-----GAELIILGGGGHFN 154 (171)
T ss_dssp EEETTBSSS-HHHHHHHHHHH-----T-EEEEETS-TTSS
T ss_pred EEcCCCCccCHHHHHHHHHHc-----CCCeEECCCCCCcc
Confidence 999999999999999999998 35799999999965
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=93.74 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=115.6
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhcc
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 614 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~ 614 (776)
-..+..++.|... +.+|+|+|+||..-. +. .+..+.++++++||+|++|+.-... + .-
T Consensus 31 pPkpLlI~tP~~~----G~yPVilF~HG~~l~----ns---~Ys~lL~HIASHGfIVVAPQl~~~~--~---------p~ 88 (307)
T PF07224_consen 31 PPKPLLIVTPSEA----GTYPVILFLHGFNLY----NS---FYSQLLAHIASHGFIVVAPQLYTLF--P---------PD 88 (307)
T ss_pred CCCCeEEecCCcC----CCccEEEEeechhhh----hH---HHHHHHHHHhhcCeEEEechhhccc--C---------CC
Confidence 4577788888775 689999999995322 22 3445678899999999999975321 1 11
Q ss_pred CCccHHHHHHHHHHHHHc--------CCCCCCcEEEEeechHHHHHHHHHhhCC-C-ceEEEEEcCCCCCcccccccccc
Q 004067 615 GRIDAEDQLTGAEWLIKQ--------GLAKVGHIGLYGWSYGGYLSAITLARFP-D-VFQCAVSGAPVTSWDGYDTFYTE 684 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~--------~~id~~~i~l~G~S~GG~~a~~~a~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~ 684 (776)
+..++++..+.++|+.+. -..+.++++++|||.||-.|..+|..+. + .|.++|.+.|+.......
T Consensus 89 ~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~----- 163 (307)
T PF07224_consen 89 GQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK----- 163 (307)
T ss_pred chHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC-----
Confidence 233467788888888764 1246689999999999999999998763 2 378888888875432110
Q ss_pred cccCCCCCCccchhcCChhhhhccCCCcEEEEecCCC-------CccCh--HHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 685 KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMID-------ENVHF--RHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D-------~~v~~--~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
.++.. ...+.| ..-++..|+++|-..-- .-|.| -+-+++++.++ .++..++-.+-||.
T Consensus 164 ---~t~P~----iLty~p--~SF~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk---~p~~hfV~~dYGHm 230 (307)
T PF07224_consen 164 ---QTPPP----ILTYVP--QSFDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECK---PPCAHFVAKDYGHM 230 (307)
T ss_pred ---CCCCC----eeecCC--cccccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhc---ccceeeeecccccc
Confidence 11100 001111 11244578888764333 11222 25578888773 56667777788886
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-06 Score=83.76 Aligned_cols=292 Identities=13% Similarity=0.114 Sum_probs=157.7
Q ss_pred CCcEEEEeCCCC--ccce-ecCCCCCCCccCceeCCCCCEEEEEECC----c--EEEEecCCCceeEEeeCCCCCceecC
Q 004067 147 PDGIYFQDLSCS--KPEL-KLSSSSCSPVIDPHLSSDGTMIAFVRDC----E--LHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 147 ~~~l~~~d~~~~--~~~~-~l~~~~~~~~~~~~~SpDg~~la~~~~~----~--l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
...||.|++++. +... .+.... .....+.|+|+++.|..+... . -|.+|..+|....+-..... |
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~-~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~-----g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAEL-GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP-----G 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhcccc-CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-----C
Confidence 346787777643 3331 122222 236778999999987666543 2 57777777887776543221 1
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
.+ ..-++.++||+.|+.+....+.+..+.+...+.-. ... -+..-.++..
T Consensus 89 ~~----------p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~------------------~~v--~~~~h~g~~p 138 (346)
T COG2706 89 SP----------PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ------------------PVV--QVVKHTGSGP 138 (346)
T ss_pred CC----------CeEEEECCCCCEEEEEEccCceEEEEEcccCCccc------------------cce--eeeecCCCCC
Confidence 11 12467899999887776554443333332222111 000 0010000000
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC-ceeecccccccCCCCc
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGV 376 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 376 (776)
. ......+.-...+.|||++|+... - +.-.|++|+++.|..+........ +.-.-+=.|.|
T Consensus 139 ~----------~rQ~~~h~H~a~~tP~~~~l~v~D-L--G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp----- 200 (346)
T COG2706 139 H----------ERQESPHVHSANFTPDGRYLVVPD-L--GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP----- 200 (346)
T ss_pred C----------ccccCCccceeeeCCCCCEEEEee-c--CCceEEEEEcccCccccccccccCCCCCcceEEEcC-----
Confidence 0 011112344578999998665542 3 334588888887776655433211 00000112333
Q ss_pred cccCCeEEE-EeccCCceEEEEEeCCCceeeccccC-----C---eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 377 TKYSGGFIW-ASEKTGFRHLYLHDINGTCLGPITEG-----D---WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 377 ~~~~~~~~~-~s~~~g~~~l~~~~~~g~~~~~lt~~-----~---~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.++++| +.+-++.-.+|.++..+++...|... + ..-...+..++||++||..-...+. +.++.++.
T Consensus 201 ---n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds--I~~f~V~~ 275 (346)
T COG2706 201 ---NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS--IAVFSVDP 275 (346)
T ss_pred ---CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe--EEEEEEcC
Confidence 334544 55557755666666665665544221 1 1122345689999998887665543 77888876
Q ss_pred CCCCCCccccceeecC--CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 448 YPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 448 ~~~g~~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
.|.. + .....+. +.......++|+|+.|+.....++. -.+|.+|-.+|..
T Consensus 276 --~~g~-L-~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L 327 (346)
T COG2706 276 --DGGK-L-ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN-ITVFERDKETGRL 327 (346)
T ss_pred --CCCE-E-EEEEEeccCCcCCccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceE
Confidence 4331 1 1222222 2224578999999999998876665 4677777777763
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-07 Score=103.50 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=106.5
Q ss_pred CccCceeCCCCCEEEEEEC---------CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCe
Q 004067 171 PVIDPHLSSDGTMIAFVRD---------CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKF 241 (776)
Q Consensus 171 ~~~~~~~SpDg~~la~~~~---------~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~ 241 (776)
.+..+++||||+++||+.. .+||+.+. +++.++++.... ...++|||||+.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~-------------------~t~PsWspDG~~ 410 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHS-------------------LTRPSWSLDADA 410 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCC-------------------CCCceECCCCCc
Confidence 4678999999999999982 26999986 555577765432 336889999999
Q ss_pred EEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEe
Q 004067 242 IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW 321 (776)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (776)
|+|...... ...+... ....++++.++++++... .. ...+..+.|
T Consensus 411 lw~v~dg~~---~~~v~~~---------------------~~~gql~~~~vd~ge~~~-~~----------~g~Issl~w 455 (591)
T PRK13616 411 VWVVVDGNT---VVRVIRD---------------------PATGQLARTPVDASAVAS-RV----------PGPISELQL 455 (591)
T ss_pred eEEEecCcc---eEEEecc---------------------CCCceEEEEeccCchhhh-cc----------CCCcCeEEE
Confidence 999863211 1111100 012467878888777654 22 234888999
Q ss_pred ccCCeEEEEEEeecCceEEEEE---EECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEE
Q 004067 322 MHGNILTAQVLNRSQTKLKVLK---FDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLH 398 (776)
Q Consensus 322 SpDg~~l~~~~~~~~~~~~l~~---~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~ 398 (776)
||||+.|++... .+|++ .....|+ ..+++...- ..........+.|.+++-+++...++...+|.+
T Consensus 456 SpDG~RiA~i~~-----g~v~Va~Vvr~~~G~-~~l~~~~~l-----~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 456 SRDGVRAAMIIG-----GKVYLAVVEQTEDGQ-YALTNPREV-----GPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred CCCCCEEEEEEC-----CEEEEEEEEeCCCCc-eeecccEEe-----ecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence 999998888762 24666 5556666 344221000 000000001124544443334445666789999
Q ss_pred eCCCceeeccccC
Q 004067 399 DINGTCLGPITEG 411 (776)
Q Consensus 399 ~~~g~~~~~lt~~ 411 (776)
+++|...+.+...
T Consensus 525 ~vDG~~~~~~~~~ 537 (591)
T PRK13616 525 NLDGSNSDALPSR 537 (591)
T ss_pred ecCCccccccCCC
Confidence 9998876665443
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=101.72 Aligned_cols=214 Identities=18% Similarity=0.083 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCC--------------CCCCC-chhhhhhhhhccCC
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR--------------GTARR-GLKFEASIKHNCGR 616 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r--------------g~g~~-~~~~~~~~~~~~~~ 616 (776)
++.|+++++||..+.. +.+. ....+-......|.+++++|-. |.+.+ -.++..... ..+.
T Consensus 52 ~~ipV~~~l~G~t~~~---~~~~-~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~-~~~~ 126 (316)
T COG0627 52 RDIPVLYLLSGLTCNE---PNVY-LLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPW-ASGP 126 (316)
T ss_pred CCCCEEEEeCCCCCCC---CceE-eccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCcc-ccCc
Confidence 6789999999965442 1121 1222345566789999988432 21111 001111100 0001
Q ss_pred ccHHHHHH--HHHHHHHcCCCCC--CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---------c--ccc
Q 004067 617 IDAEDQLT--GAEWLIKQGLAKV--GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------Y--DTF 681 (776)
Q Consensus 617 ~~~~D~~~--~i~~l~~~~~id~--~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------~--~~~ 681 (776)
+..++++. .-..+.+...++. ++.+|+||||||+-|+.+|+++|++|+.+...+|+.+... . ...
T Consensus 127 ~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~ 206 (316)
T COG0627 127 YQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGK 206 (316)
T ss_pred cchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCc
Confidence 22233221 1223333343444 3899999999999999999999999999999999877541 1 111
Q ss_pred ccccccCCCCCCccchhcCChhhhhcc--------------CCCcEEEEecCCCCccC--hHHHHHHHHHHHHCCCCeEE
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHVHK--------------MKGKLLLVHGMIDENVH--FRHTARLINALVAARKPYEI 745 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~ 745 (776)
..+.+++... ...+.++++...+.+ ...++++-+|..|.... ......+.+++++.+.+..+
T Consensus 207 ~~~~~~G~~~--~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~ 284 (316)
T COG0627 207 AFNAMLGPDS--DPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGV 284 (316)
T ss_pred cHHHhcCCCc--cccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCcee
Confidence 1122223221 124555566555543 34678888999987764 34578899999999999999
Q ss_pred EEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 746 LIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 746 ~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
...++.+|.+.. ....++..+.|+...
T Consensus 285 ~~~~~G~Hsw~~---w~~~l~~~~~~~a~~ 311 (316)
T COG0627 285 RDQPGGDHSWYF---WASQLADHLPWLAGA 311 (316)
T ss_pred eeCCCCCcCHHH---HHHHHHHHHHHHHHH
Confidence 999899997643 455567777777654
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-08 Score=88.30 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=92.0
Q ss_pred HHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhc
Q 004067 623 LTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEY 699 (776)
Q Consensus 623 ~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (776)
...+..|..+ ..++.+||++-|+||||.++++++..++....+.+..+++..... . ..+. +..
T Consensus 75 a~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~------~---~~~~-----~~~ 140 (206)
T KOG2112|consen 75 ADNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS------I---GLPG-----WLP 140 (206)
T ss_pred HHHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch------h---hccC-----Ccc
Confidence 3444444443 457889999999999999999999998776666666665532100 0 0000 000
Q ss_pred CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 700 SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 700 ~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.. + ..|++..||+.|+.||..-.+...+.|+..+..+++..|++.+|... .+.+..+..|+.+
T Consensus 141 -----~~-~-~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 141 -----GV-N-YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLKSWIKT 203 (206)
T ss_pred -----cc-C-cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHHHHHHH
Confidence 00 0 57999999999999999999999999999999999999999999763 2345778888765
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=81.10 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=104.8
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC--CchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR--RGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~--~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
..-+||+.||.+.+.. .......+..|+.+|+.|.-++++=... .++.-...... ..-...+.++..+.
T Consensus 13 ~~~tilLaHGAGasmd-----St~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~----t~~~~~~~~~aql~ 83 (213)
T COG3571 13 APVTILLAHGAGASMD-----STSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSG----TLNPEYIVAIAQLR 83 (213)
T ss_pred CCEEEEEecCCCCCCC-----CHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccc----cCCHHHHHHHHHHH
Confidence 3357889999655433 1233445778999999999998752211 11000000000 11223455566666
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEc-CCCCCcccccccccccccCCCCCCccchhcCChhhhhccC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG-APVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 709 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 709 (776)
+.. +..++++-|+||||-++.+++..-...+.+.+++ .|+.. -+.|+. -...++..+
T Consensus 84 ~~l--~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------pGKPe~--------~Rt~HL~gl 141 (213)
T COG3571 84 AGL--AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------PGKPEQ--------LRTEHLTGL 141 (213)
T ss_pred hcc--cCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------CCCccc--------chhhhccCC
Confidence 543 5568999999999999999887543335666653 33321 022221 124678899
Q ss_pred CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+.|+||.||+.|+.-...+. .... ...+++++++.++.|..
T Consensus 142 ~tPtli~qGtrD~fGtr~~V---a~y~--ls~~iev~wl~~adHDL 182 (213)
T COG3571 142 KTPTLITQGTRDEFGTRDEV---AGYA--LSDPIEVVWLEDADHDL 182 (213)
T ss_pred CCCeEEeecccccccCHHHH---Hhhh--cCCceEEEEeccCcccc
Confidence 99999999999998766544 2222 24689999999999986
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.7e-07 Score=85.03 Aligned_cols=319 Identities=12% Similarity=0.103 Sum_probs=170.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+-|+.|..+|.-....+ +.|.+|++..-+-..-.+.. ..|+.+..|||
T Consensus 51 i~yieW~ads~~ilC~~yk~----~~vqvwsl~Qpew~ckIdeg-----------------------~agls~~~WSP-- 101 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKD----PKVQVWSLVQPEWYCKIDEG-----------------------QAGLSSISWSP-- 101 (447)
T ss_pred hhheeeeccceeeeeeeecc----ceEEEEEeecceeEEEeccC-----------------------CCcceeeeECC--
Confidence 47788999999987655433 46999999877664444321 25788899999
Q ss_pred CCceEEEEeCC--CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc---------------EEEEecCC
Q 004067 137 SKKKIIMVPLP--DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE---------------LHVLNLLI 199 (776)
Q Consensus 137 ~dg~~l~~~~~--~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~---------------l~~~~l~~ 199 (776)
||+.|+.... ..|-+|.+.+.+.. .+..... .....+|.|||+..+..++.+ +-.++++|
T Consensus 102 -dgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~-~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT 178 (447)
T KOG4497|consen 102 -DGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKT-NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT 178 (447)
T ss_pred -CcceEeeeecceeEEEEEEeccceeE-Eeccccc-CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc
Confidence 9999987744 45778999888776 5554443 367889999999988887642 11222222
Q ss_pred CceeEEeeCCCCC--ceecCCccc---ceecccCCcceEEECCCCCeEEEEEecCCCCC----eE-EEeecCCCCCC--C
Q 004067 200 NEQRQLTHGANGN--TVTHGLAEY---IAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIP----RF-RIMHQGKSSVG--S 267 (776)
Q Consensus 200 g~~~~lt~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~----~~-~~~~~~~~~~~--~ 267 (776)
-..+-+.-.+.+. ......-++ .++-.. .+....|||-++.|+..+.|.--.- .+ .+..+.+-..+ +
T Consensus 179 ~DltgieWsPdg~~laVwd~~Leykv~aYe~~l-G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp 257 (447)
T KOG4497|consen 179 IDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL-GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDP 257 (447)
T ss_pred ccccCceECCCCcEEEEecchhhheeeeeeecc-ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCc
Confidence 2111111111110 000000000 111111 1345678888888887766532100 00 01111110000 0
Q ss_pred C--------------CcceecCCCCCCCCCeEEEEEEEcCCCc------eEEEEcccCCC-CCCCCcceEEEEEeccCCe
Q 004067 268 E--------------AQEDHAYPFAGASNVKVRLGVVSAAGGP------VSWMDLQCGGT-DQNYDEEYLARVNWMHGNI 326 (776)
Q Consensus 268 ~--------------~~~~~~~~~~g~~~~~~~l~~~d~~~~~------~~~l~~~~~~~-~~~~~~~~~~~~~~SpDg~ 326 (776)
. ...-..|+.. +.....|....-. ...+... +++ ..+...-.+.-++||+|..
T Consensus 258 ~~~~~~ke~~~~~ql~~~cLsf~p~-----~~~a~~~~~se~~YE~~~~pv~~~~l-kp~tD~pnPk~g~g~lafs~Ds~ 331 (447)
T KOG4497|consen 258 TLHLLEKETFSIVQLLHHCLSFTPT-----DLEAHIWEESETIYEQQMTPVKVHKL-KPPTDFPNPKCGAGKLAFSCDST 331 (447)
T ss_pred hhhhhhhhhcchhhhcccccccCCC-----ccccCccccchhhhhhhhcceeeecc-cCCCCCCCcccccceeeecCCce
Confidence 0 0000112111 1111122111000 0001000 111 1122244577899999997
Q ss_pred EEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCe--EEEEeccCCceEEEEEeCCCce
Q 004067 327 LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
+++... +.-...||+||+..-+...+.....+.- .+-|+++. ++... |..+||.|.++|--
T Consensus 332 y~aTrn--d~~PnalW~Wdlq~l~l~avLiQk~pir------------af~WdP~~prL~vct---g~srLY~W~psg~~ 394 (447)
T KOG4497|consen 332 YAATRN--DKYPNALWLWDLQNLKLHAVLIQKHPIR------------AFEWDPGRPRLVVCT---GKSRLYFWAPSGPR 394 (447)
T ss_pred EEeeec--CCCCceEEEEechhhhhhhhhhhcccee------------EEEeCCCCceEEEEc---CCceEEEEcCCCce
Confidence 665442 2245689999998877666555443311 01344443 33332 44589999999977
Q ss_pred eeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 405 LGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 405 ~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
...+....+.+..+. |..+|..|+..+
T Consensus 395 ~V~vP~~GF~i~~l~-W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 395 VVGVPKKGFNIQKLQ-WLQPGEFIVLCG 421 (447)
T ss_pred EEecCCCCceeeeEE-ecCCCcEEEEEc
Confidence 777777778887775 888888766654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-07 Score=89.43 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=86.6
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEec---CCCceeEEeeCCCCCceecCCccc
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNL---LINEQRQLTHGANGNTVTHGLAEY 221 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l---~~g~~~~lt~~~~~~~~~~~~~~~ 221 (776)
.+.+|.+|++.|.... .+...... ....+.||||+.||...- .++.+|.+ .+|+.+.+..-- -+.|..
T Consensus 207 ~dt~i~lw~lkGq~L~-~idtnq~~-n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf----~LkGH~-- 278 (420)
T KOG2096|consen 207 LDTKICLWDLKGQLLQ-SIDTNQSS-NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF----SLKGHQ-- 278 (420)
T ss_pred CCCcEEEEecCCceee-eecccccc-ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh----eeccch--
Confidence 4456778888865555 55444432 566899999999887653 46777654 234332221100 001111
Q ss_pred ceecccCCcceEEECCCCCeEEEEEecCCCCCeEEE--eecCCCCCCCCCccee--------------cCCCCCCCCC--
Q 004067 222 IAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRI--MHQGKSSVGSEAQEDH--------------AYPFAGASNV-- 283 (776)
Q Consensus 222 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~g~~~~-- 283 (776)
..+..++|||++++++.++.|.. ...|.. .+.-.+ .+...... .....|+..+
T Consensus 279 ------saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~q--Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 279 ------SAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQ--DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred ------hheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCC--CchHhhcCCcchhhcCCCceEEEeCCCCcEEEee
Confidence 11457889999999998886654 111211 111111 01111111 1111122111
Q ss_pred -eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 284 -KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 284 -~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
...|.++..++|+...-- ..-+...|..++|++||++++...
T Consensus 350 ~gs~l~~~~se~g~~~~~~-------e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 350 FGSDLKVFASEDGKDYPEL-------EDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred cCCceEEEEcccCccchhH-------HHhhcCceeeEEecCCCcEEeeec
Confidence 134667776666533210 134567899999999999887664
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.6e-07 Score=83.57 Aligned_cols=197 Identities=12% Similarity=0.050 Sum_probs=122.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
.+.+++.-||..|.-.+.+. ..+||.-. +|...-..-. +...+-....+-
T Consensus 13 lTqiKyN~eGDLlFscaKD~---~~~vw~s~-nGerlGty~G------------------------HtGavW~~Did~-- 62 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDS---TPTVWYSL-NGERLGTYDG------------------------HTGAVWCCDIDW-- 62 (327)
T ss_pred cceEEecCCCcEEEEecCCC---CceEEEec-CCceeeeecC------------------------CCceEEEEEecC--
Confidence 37888888998775544433 35666442 2322211111 112343444444
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC------cEEEEecCCCc--------
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC------ELHVLNLLINE-------- 201 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~-------- 201 (776)
|.++++.. .+..+.+||+++|+....+. .+. .+....||++|..++++.+. -|.++++..-.
T Consensus 63 -~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~-~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 63 -DSKHLITGSADQTAKLWDVETGKQLATWK-TNS-PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred -CcceeeeccccceeEEEEcCCCcEEEEee-cCC-eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 66767654 67789999999999873333 333 47889999999999999874 36777766322
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
...+..... .+...-|+|-|+.|++...+
T Consensus 140 ~~kI~t~~s------------------kit~a~Wg~l~~~ii~Ghe~--------------------------------- 168 (327)
T KOG0643|consen 140 YLKIPTPDS------------------KITSALWGPLGETIIAGHED--------------------------------- 168 (327)
T ss_pred eEEecCCcc------------------ceeeeeecccCCEEEEecCC---------------------------------
Confidence 122221111 13456699999999875432
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
..|-.||+.+|+...-.. ..+...|.++.+|||..+.+..+ .+..-.++|..+-+.
T Consensus 169 ---G~is~~da~~g~~~v~s~-------~~h~~~Ind~q~s~d~T~FiT~s----~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 169 ---GSISIYDARTGKELVDSD-------EEHSSKINDLQFSRDRTYFITGS----KDTTAKLVDVRTLEV 224 (327)
T ss_pred ---CcEEEEEcccCceeeech-------hhhccccccccccCCcceEEecc----cCccceeeeccceee
Confidence 347889999886543322 34556889999999997554443 344556778777554
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-06 Score=94.39 Aligned_cols=295 Identities=11% Similarity=0.100 Sum_probs=173.9
Q ss_pred cCCCCEEEEEeCCCCcCcceEEEEecC--CCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 63 SPDDNLITYLLSPDHSLSRKVFSFDPK--TCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 63 SpDG~~ia~~~~~~~~~~~~l~~~~~~--~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
...|.+.+|.....+....-+|+.... ++.. +.|.+... ++.++. ..-+..+.+|| ||
T Consensus 75 ~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~-------l~~~~~---------~~~~~~~~~Sp---dg 135 (414)
T PF02897_consen 75 VRRGGYYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNE-------LAKDGG---------YVSLGGFSVSP---DG 135 (414)
T ss_dssp EEETTEEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGG-------GSTTSS----------EEEEEEEETT---TS
T ss_pred EEECCeEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchH-------hhccCc---------eEEeeeeeECC---CC
Confidence 456778888776555545678888877 4554 77776432 221110 01123567777 99
Q ss_pred eEEEEeC--C----CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC------------CcEEEEecCCCc
Q 004067 140 KIIMVPL--P----DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD------------CELHVLNLLINE 201 (776)
Q Consensus 140 ~~l~~~~--~----~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~------------~~l~~~~l~~g~ 201 (776)
++++|.. . ..|+++|+++|+......... ....+.|++||+.+.|+.. .+||.+.+.++.
T Consensus 136 ~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 136 KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ 213 (414)
T ss_dssp SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G
T ss_pred CEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh
Confidence 9999982 2 248999999997651111111 1223899999999999973 248999998886
Q ss_pred ee--EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 202 QR--QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 202 ~~--~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
.. .+....... . | ...+..|+||+.|+..+.....
T Consensus 214 ~~d~lvfe~~~~~-~------~--------~~~~~~s~d~~~l~i~~~~~~~---------------------------- 250 (414)
T PF02897_consen 214 SEDELVFEEPDEP-F------W--------FVSVSRSKDGRYLFISSSSGTS---------------------------- 250 (414)
T ss_dssp GG-EEEEC-TTCT-T------S--------EEEEEE-TTSSEEEEEEESSSS----------------------------
T ss_pred HhCeeEEeecCCC-c------E--------EEEEEecCcccEEEEEEEcccc----------------------------
Confidence 54 443333221 0 0 1256789999988776543211
Q ss_pred CCCCeEEEEEEEcCCC-----ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc---e
Q 004067 280 ASNVKVRLGVVSAAGG-----PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ---R 351 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~---~ 351 (776)
...+++.++..+ +.+.+... .......+... |..+++.++.+.....|+.++++... .
T Consensus 251 ----~s~v~~~d~~~~~~~~~~~~~l~~~--------~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~ 316 (414)
T PF02897_consen 251 ----ESEVYLLDLDDGGSPDAKPKLLSPR--------EDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEW 316 (414)
T ss_dssp ----EEEEEEEECCCTTTSS-SEEEEEES--------SSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGE
T ss_pred ----CCeEEEEeccccCCCcCCcEEEeCC--------CCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccc
Confidence 267899999875 55555331 22222223332 54667777887788999999998876 3
Q ss_pred E-EEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCC-CceeeccccCCeE-EEEEEeecCCCcEE
Q 004067 352 K-VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN-GTCLGPITEGDWM-VEQIVGVNEASGQV 428 (776)
Q Consensus 352 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~-g~~~~~lt~~~~~-~~~~~~~s~dg~~i 428 (776)
+ .+..+........ + ....+.+++....++...|+++++. +.....+...... +... ..++++..+
T Consensus 317 ~~~l~~~~~~~~l~~---~-------~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~-~~~~~~~~~ 385 (414)
T PF02897_consen 317 WTVLIPEDEDVSLED---V-------SLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGV-SGDFDSDEL 385 (414)
T ss_dssp EEEEE--SSSEEEEE---E-------EEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEE-ES-TT-SEE
T ss_pred eeEEcCCCCceeEEE---E-------EEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEecc-CCCCCCCEE
Confidence 4 4555443322221 1 2224567777778999999999999 7766666554322 3333 356777778
Q ss_pred EEEEcc-CCCceeeEEEEEeC
Q 004067 429 YFTGTL-DGPLESHLYCAKLY 448 (776)
Q Consensus 429 ~~~~~~-~~~~~~~l~~~~~~ 448 (776)
+|..+. ..| ..+|.+++.
T Consensus 386 ~~~~ss~~~P--~~~y~~d~~ 404 (414)
T PF02897_consen 386 RFSYSSFTTP--PTVYRYDLA 404 (414)
T ss_dssp EEEEEETTEE--EEEEEEETT
T ss_pred EEEEeCCCCC--CEEEEEECC
Confidence 877554 445 689999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-07 Score=88.09 Aligned_cols=221 Identities=15% Similarity=0.075 Sum_probs=117.7
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEE-EEECCCC--
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV-WKLDNRG-- 598 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v-~~~d~rg-- 598 (776)
..+...+.+. .|.....++..|++.... .+||||+++.|..-.... .......+++.-..+ +.+.++.
T Consensus 8 ~~~~~~l~s~~~~~~yri~i~~P~~~~~~-~~YpVlY~lDGn~vf~~~-------~~~~~~~~~~~~~~~iv~iGye~~~ 79 (264)
T COG2819 8 HFRERDLKSANTGRKYRIFIATPKNYPKP-GGYPVLYMLDGNAVFNAL-------TEIMLRILADLPPPVIVGIGYETIL 79 (264)
T ss_pred cceeEeeeecCCCcEEEEEecCCCCCCCC-CCCcEEEEecchhhhchH-------HHHhhhhhhcCCCceEEEecccccc
Confidence 4555556655 457789999999987433 459999998884221110 011122233322111 1122211
Q ss_pred -------CCCCchhh----hhhh----hhccCC-c-cHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhCC
Q 004067 599 -------TARRGLKF----EASI----KHNCGR-I-DAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFP 660 (776)
Q Consensus 599 -------~g~~~~~~----~~~~----~~~~~~-~-~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~~ 660 (776)
..++.... .... ....|. . -.+-+...+.-+++. ..++.++.+|+|||+||.+++.+...+|
T Consensus 80 ~~~~~~r~~DyTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p 159 (264)
T COG2819 80 VFDPNRRAYDYTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYP 159 (264)
T ss_pred ccccccccccCCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCc
Confidence 11111100 0000 111111 1 123344444444443 5688899999999999999999999999
Q ss_pred CceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEec--CCCCcc------ChHHHHHH
Q 004067 661 DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHG--MIDENV------HFRHTARL 732 (776)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G--~~D~~v------~~~~~~~~ 732 (776)
+.|.+.++.+|...|.... ........... + ..++++..| +.|... ....+.+.
T Consensus 160 ~~F~~y~~~SPSlWw~n~~----------------~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~ 221 (264)
T COG2819 160 DCFGRYGLISPSLWWHNEA----------------ILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAEL 221 (264)
T ss_pred chhceeeeecchhhhCCHH----------------HhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHH
Confidence 9999999999986553211 01011111111 1 334444444 333321 22445555
Q ss_pred HHHHHH-CCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 733 INALVA-ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 733 ~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.+.+.+ .+....+..+|+.+|.-. .-..+...+.|+.
T Consensus 222 ~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 222 SSLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred HHHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 566666 677888999998888642 2233444555543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=94.33 Aligned_cols=275 Identities=11% Similarity=0.065 Sum_probs=153.6
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc----eecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCC
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE----LKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLI 199 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~----~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~ 199 (776)
-+.+..+.| .|-+++.. .+.++..||+.+=... +.|.+.+...+...+|||.|..|+.++.. +..++|-++
T Consensus 169 ~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 169 IVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred EEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 467888999 99999876 7889999999874433 25656565568899999999999888754 566666665
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
-+......+.. +..... ....+..-...-.|.|+.+..+......
T Consensus 246 ~~~~e~~KGDQ---YI~Dm~--nTKGHia~lt~g~whP~~k~~FlT~s~D------------------------------ 290 (641)
T KOG0772|consen 246 FEIVEFSKGDQ---YIRDMY--NTKGHIAELTCGCWHPDNKEEFLTCSYD------------------------------ 290 (641)
T ss_pred ceeeeeeccch---hhhhhh--ccCCceeeeeccccccCcccceEEecCC------------------------------
Confidence 54443322111 100000 0000001122335999998777665433
Q ss_pred CCCCeEEEEEEEcCCCc--eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 280 ASNVKVRLGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..|.+||++.-+ ...+... . ..+..-.+...+|+|||+.|+... .++.|-.|+..+-..+..
T Consensus 291 -----gtlRiWdv~~~k~q~qVik~k--~--~~g~Rv~~tsC~~nrdg~~iAagc----~DGSIQ~W~~~~~~v~p~--- 354 (641)
T KOG0772|consen 291 -----GTLRIWDVNNTKSQLQVIKTK--P--AGGKRVPVTSCAWNRDGKLIAAGC----LDGSIQIWDKGSRTVRPV--- 354 (641)
T ss_pred -----CcEEEEecCCchhheeEEeec--c--CCCcccCceeeecCCCcchhhhcc----cCCceeeeecCCcccccc---
Confidence 346778776543 2222211 0 011223456789999999877665 455677787522111111
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
+.+-+ ....|. .+..+ .||.||++|+-.+..+ .
T Consensus 355 --------------------------~~vk~---------AH~~g~----------~Itsi-~FS~dg~~LlSRg~D~-t 387 (641)
T KOG0772|consen 355 --------------------------MKVKD---------AHLPGQ----------DITSI-SFSYDGNYLLSRGFDD-T 387 (641)
T ss_pred --------------------------eEeee---------ccCCCC----------ceeEE-EeccccchhhhccCCC-c
Confidence 11110 011111 22333 3999999766555443 3
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC--CCCCCEEEEEEcCCCceeEee
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS--LDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~i~~~~~~~~~~~~~l 506 (776)
.++|.+.-- +.++...+-|.+.-......||||.+-|+...+. ..+++.|+.+|..+-+.+..+
T Consensus 388 --LKvWDLrq~---kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 388 --LKVWDLRQF---KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred --eeeeecccc---ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 789988741 1111111222222122357999999877665543 355677888886555444333
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.7e-08 Score=92.14 Aligned_cols=206 Identities=16% Similarity=0.068 Sum_probs=114.5
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhC----CcEEEEECCCCCC
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK----GILVWKLDNRGTA 600 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~----G~~v~~~d~rg~g 600 (776)
+.+.+...-..+....+|.|.+. ....++|++++.||--.... . ......+.+... .-+++.+|+--.-
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy-~~~~k~pvl~~~DG~~~~~~-----g-~i~~~~dsli~~g~i~pai~vgid~~d~~ 142 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGY-NPLEKYPVLYLQDGQDWFRS-----G-RIPRILDSLIAAGEIPPAILVGIDYIDVK 142 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCC-CccccccEEEEeccHHHHhc-----C-ChHHHHHHHHHcCCCCCceEEecCCCCHH
Confidence 33334333234466666777665 23368999999999322221 1 111223344433 4678888874211
Q ss_pred CCchhhhhhhhhccCCccHHHH-HHHHHHHHHcC--CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQ-LTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG 677 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~-~~~i~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~ 677 (776)
.... ..... ......+ .+.+=++.+.. .-+.+.-+++|.|+||..+++++.++|++|..++..+|..++..
T Consensus 143 ~R~~-----~~~~n-~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~ 216 (299)
T COG2382 143 KRRE-----ELHCN-EAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTP 216 (299)
T ss_pred HHHH-----Hhccc-HHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCc
Confidence 1111 10100 0001111 12222333332 13556788999999999999999999999999999999987643
Q ss_pred ccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC
Q 004067 678 YDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 756 (776)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 756 (776)
....- + .......+....+.....-++...++.+.+.+ ...++++.|.+.+.+..+..|+| ||...
T Consensus 217 ~~~~~-~---------~~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~~--pNr~L~~~L~~~g~~~~yre~~G-gHdw~ 282 (299)
T COG2382 217 LDTQP-Q---------GEVAESLKILHAIGTDERIVLTTGGEEGDFLR--PNRALAAQLEKKGIPYYYREYPG-GHDWA 282 (299)
T ss_pred ccccc-c---------cchhhhhhhhhccCccceEEeecCCccccccc--hhHHHHHHHHhcCCcceeeecCC-CCchh
Confidence 32110 0 00011111112222222323333344444444 46889999999999999999999 99653
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-08 Score=100.94 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=77.5
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhH-HHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~-~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
..|++|++||..++.. ..|. ..++. ++...+|.|+++|+++.+... +...... . ....+++...++.+.+
T Consensus 35 ~~p~vilIHG~~~~~~--~~~~---~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~~~-~-~~v~~~la~~l~~L~~ 105 (275)
T cd00707 35 SRPTRFIIHGWTSSGE--ESWI---SDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAVNN-T-RVVGAELAKFLDFLVD 105 (275)
T ss_pred CCCcEEEEcCCCCCCC--CcHH---HHHHHHHHhcCCCEEEEEECccccccC--hHHHHHh-H-HHHHHHHHHHHHHHHH
Confidence 4589999999766531 2232 11233 444578999999999763322 1111110 0 0113567778888877
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
...++.+++.++||||||++|..++.+.+++++.++++.|...
T Consensus 106 ~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 106 NTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred hcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 6555778999999999999999999999999999999887643
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-07 Score=94.60 Aligned_cols=194 Identities=18% Similarity=0.157 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhC--CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
|.|+++||.++... .|.. ....+... .|.++.+|+||+|.+. .. ..........+..+.+.
T Consensus 22 ~~i~~~hg~~~~~~---~~~~----~~~~~~~~~~~~~~~~~d~~g~g~s~-~~---------~~~~~~~~~~~~~~~~~ 84 (282)
T COG0596 22 PPLVLLHGFPGSSS---VWRP----VFKVLPALAARYRVIAPDLRGHGRSD-PA---------GYSLSAYADDLAALLDA 84 (282)
T ss_pred CeEEEeCCCCCchh---hhHH----HHHHhhccccceEEEEecccCCCCCC-cc---------cccHHHHHHHHHHHHHH
Confidence 58999999876644 2221 11222221 1999999999999886 10 00112223334444443
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC------------c-ccc------cccc-----------
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS------------W-DGY------DTFY----------- 682 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~------------~-~~~------~~~~----------- 682 (776)
. ...++.++||||||.+++.++.++|+.++++++.++... . ... ....
T Consensus 85 ~--~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (282)
T COG0596 85 L--GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQPAGAAPLAALADLLLGLDAAAFAALLAA 162 (282)
T ss_pred h--CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCCCcccccCccccCccccchhhhhhhhhccchhhhhhhhhc
Confidence 2 223499999999999999999999999999888775432 0 000 0000
Q ss_pred ---cccccC------C---CCCCccc------------hh-----cC--ChhhhhccCCCcEEEEecCCCCccChHHHHH
Q 004067 683 ---TEKYMG------L---PSEDPVG------------YE-----YS--SVMHHVHKMKGKLLLVHGMIDENVHFRHTAR 731 (776)
Q Consensus 683 ---~~~~~~------~---~~~~~~~------------~~-----~~--~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~ 731 (776)
...... . ....... .. .. .......++..|+++++|..|...+......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~d~~~~~~~~~~ 242 (282)
T COG0596 163 LGLLAALAAAARAGLAEALRAPLLGAAAAAFARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAELARR 242 (282)
T ss_pred ccccccccccchhccccccccccchhHhhhhhhhcccccchhhhcccccccchhhccCCCCeEEEecCCCCcCCHHHHHH
Confidence 000000 0 0000000 00 00 1112344556899999999996666554334
Q ss_pred HHHHHHHCCC-CeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 732 LINALVAARK-PYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 732 ~~~~l~~~~~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
+.+.+ . ..++.++++++|.. ..+....+.+.+.+|+
T Consensus 243 ~~~~~----~~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~~~ 279 (282)
T COG0596 243 LAAAL----PNDARLVVIPGAGHFP-HLEAPEAFAAALLAFL 279 (282)
T ss_pred HHhhC----CCCceEEEeCCCCCcc-hhhcHHHHHHHHHHHH
Confidence 43333 3 47899999999987 4555667777777643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-06 Score=82.95 Aligned_cols=283 Identities=12% Similarity=0.071 Sum_probs=148.1
Q ss_pred HhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc----eecCCCCCCCccCceeCCCCCEEEEEEC--CcEEE
Q 004067 122 ERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE----LKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHV 194 (776)
Q Consensus 122 ~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~----~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~ 194 (776)
.++..+..+.||. ||+.|+.. .++.|.+|++..-+.+ .+.+ -+......+.|+||-+.+++... +.|++
T Consensus 84 gH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 84 GHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred ccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4456789999999 99999976 6788999988753322 0111 11123567899999998888653 45777
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccce--eccc--CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIA--QEEM--DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
+-+.-.+. +... .. ...|.+ -++. ..+-.+-..-.++.|+..+.+
T Consensus 160 yk~~K~~d------G~~~--~~-~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---------------------- 208 (420)
T KOG2096|consen 160 YKLVKKTD------GSGS--HH-FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---------------------- 208 (420)
T ss_pred EEeeeccc------CCCC--cc-cccccccccchhcccceEEEeecCCceEEEEecCC----------------------
Confidence 75532111 1100 00 000000 0000 001112233344555444322
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC---C
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI---K 347 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~---~ 347 (776)
..|-+|++++..+..+++. +......+.||||++|+... -..++.+|.+ +
T Consensus 209 --------------t~i~lw~lkGq~L~~idtn---------q~~n~~aavSP~GRFia~~g----FTpDVkVwE~~f~k 261 (420)
T KOG2096|consen 209 --------------TKICLWDLKGQLLQSIDTN---------QSSNYDAAVSPDGRFIAVSG----FTPDVKVWEPIFTK 261 (420)
T ss_pred --------------CcEEEEecCCceeeeeccc---------cccccceeeCCCCcEEEEec----CCCCceEEEEEecc
Confidence 4589999998777777553 33445688999999777654 2334445543 3
Q ss_pred CCceEEE---EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCC---CceeeccccC-------CeE
Q 004067 348 TGQRKVI---LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN---GTCLGPITEG-------DWM 414 (776)
Q Consensus 348 ~g~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~---g~~~~~lt~~-------~~~ 414 (776)
.|+.+.+ .+-.+..-......|++ +..-+.+..++|...||-.|.. +..+..|-.+ ...
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~aFsn--------~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAAAFSN--------SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred CcchhhhhhhheeccchhheeeeeeCC--------CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 4544322 22111100011112333 2234556668886665554432 2223333222 112
Q ss_pred EEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEee
Q 004067 415 VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 415 ~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~ 484 (776)
... +..+|.|+.++.....+ +++|... +|+ .......+- +..+..++|++||++++..-.
T Consensus 334 p~R-L~lsP~g~~lA~s~gs~----l~~~~se---~g~-~~~~~e~~h-~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 334 PVR-LELSPSGDSLAVSFGSD----LKVFASE---DGK-DYPELEDIH-STTISSISYSSDGKYIATCGD 393 (420)
T ss_pred ceE-EEeCCCCcEEEeecCCc----eEEEEcc---cCc-cchhHHHhh-cCceeeEEecCCCcEEeeecc
Confidence 223 34899999776665432 5666655 343 001222222 224667899999999886643
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-06 Score=85.85 Aligned_cols=233 Identities=12% Similarity=0.113 Sum_probs=138.4
Q ss_pred eEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeC-CCCCEEEEEECCcEEEEecCCCceeEE
Q 004067 129 RYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLS-SDGTMIAFVRDCELHVLNLLINEQRQL 205 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~S-pDg~~la~~~~~~l~~~~l~~g~~~~l 205 (776)
.+.|.+ ....|++. ..+.|+.++..+++.. .+.... .....+. +| ..+++.....+.++++++++.+.+
T Consensus 4 gp~~d~---~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~---~~G~~~~~~~-g~l~v~~~~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDP---RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG---PNGMAFDRPD-GRLYVADSGGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEET---TTTEEEEEETTTTEEEEEETTTTEEE-EEESSS---EEEEEEECTT-SEEEEEETTCEEEEETTTTEEEEE
T ss_pred ceEEEC---CCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC---CceEEEEccC-CEEEEEEcCceEEEecCCCcEEEE
Confidence 467887 77788877 5788999999998876 443322 3445666 56 566777777888889999988877
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
....... ....+.+.+++.|||+ |++.......... ....
T Consensus 76 ~~~~~~~------------~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~---------------------------~~~g 115 (246)
T PF08450_consen 76 ADLPDGG------------VPFNRPNDVAVDPDGN-LYVTDSGGGGASG---------------------------IDPG 115 (246)
T ss_dssp EEEETTC------------SCTEEEEEEEE-TTS--EEEEEECCBCTTC---------------------------GGSE
T ss_pred eeccCCC------------cccCCCceEEEcCCCC-EEEEecCCCcccc---------------------------cccc
Confidence 6542110 0011244788999998 6665532211000 0005
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC--Cce--EEEEEeccCc
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT--GQR--KVILVEELDS 361 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~--g~~--~~l~~~~~~~ 361 (776)
.|+.++.+ ++...+.. .......++|||||+.|++.... ...|++++++. +.. +.+..+....
T Consensus 116 ~v~~~~~~-~~~~~~~~---------~~~~pNGi~~s~dg~~lyv~ds~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 182 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVAD---------GLGFPNGIAFSPDGKTLYVADSF---NGRIWRFDLDADGGELSNRRVFIDFPGG 182 (246)
T ss_dssp EEEEEETT-SEEEEEEE---------EESSEEEEEEETTSSEEEEEETT---TTEEEEEEEETTTCCEEEEEEEEE-SSS
T ss_pred ceEEECCC-CeEEEEec---------CcccccceEECCcchheeecccc---cceeEEEeccccccceeeeeeEEEcCCC
Confidence 68999998 66655522 23345679999999977765432 33488888853 322 2222211110
Q ss_pred eeecccccccCCCCccccCCeEEEEecc-CCceEEEEEeCCCceeeccccCCeEEEEEEee-cCCCcEEEEEEc
Q 004067 362 WVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDINGTCLGPITEGDWMVEQIVGV-NEASGQVYFTGT 433 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~-s~dg~~i~~~~~ 433 (776)
. ..+.++..|.++-+|++.. .+ .|++++++|.....+........+.. | .++.+.||+++.
T Consensus 183 ~--------g~pDG~~vD~~G~l~va~~~~~--~I~~~~p~G~~~~~i~~p~~~~t~~~-fgg~~~~~L~vTta 245 (246)
T PF08450_consen 183 P--------GYPDGLAVDSDGNLWVADWGGG--RIVVFDPDGKLLREIELPVPRPTNCA-FGGPDGKTLYVTTA 245 (246)
T ss_dssp S--------CEEEEEEEBTTS-EEEEEETTT--EEEEEETTSCEEEEEE-SSSSEEEEE-EESTTSSEEEEEEB
T ss_pred C--------cCCCcceEcCCCCEEEEEcCCC--EEEEECCCccEEEEEcCCCCCEEEEE-EECCCCCEEEEEeC
Confidence 0 0122334455555555543 34 89999999776776666533445544 6 577788888764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.2e-08 Score=95.01 Aligned_cols=222 Identities=20% Similarity=0.269 Sum_probs=131.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh-h------
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA-S------ 609 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~-~------ 609 (776)
-+..++.|+.. ..+..|++|.+.|.+.... | .+...++..|.+.|+..+.+..+=+|..-..... .
T Consensus 77 a~~~~~~P~~~--~~~~rp~~IhLagTGDh~f----~-rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~Vs 149 (348)
T PF09752_consen 77 ARFQLLLPKRW--DSPYRPVCIHLAGTGDHGF----W-RRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVS 149 (348)
T ss_pred eEEEEEECCcc--ccCCCceEEEecCCCccch----h-hhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchh
Confidence 44555566653 1246789999999654322 2 2334447778888999999998766543211100 0
Q ss_pred hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC--------------Cc
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT--------------SW 675 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~--------------~~ 675 (776)
-...++...+.+....+.|+.++++ .+++|.|.||||.+|.++++..|..+..+-.+++.. +|
T Consensus 150 Dl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W 226 (348)
T PF09752_consen 150 DLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINW 226 (348)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCH
Confidence 0112233457788888999998853 599999999999999999999988765554444332 23
Q ss_pred ccccccc-----cccccCCCCC--------------Cccc----hhcCChhhhhccCC-----CcEEEEecCCCCccChH
Q 004067 676 DGYDTFY-----TEKYMGLPSE--------------DPVG----YEYSSVMHHVHKMK-----GKLLLVHGMIDENVHFR 727 (776)
Q Consensus 676 ~~~~~~~-----~~~~~~~~~~--------------~~~~----~~~~~~~~~~~~i~-----~P~lii~G~~D~~v~~~ 727 (776)
......+ .+.....+.. ..+. .....-..++.++. ..+.++.+++|..||..
T Consensus 227 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~ 306 (348)
T PF09752_consen 227 DALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRH 306 (348)
T ss_pred HHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechh
Confidence 2221111 1100000000 0000 00001112233333 35788999999999988
Q ss_pred HHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 728 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 728 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
....+.+.. ..+++..+++ ||.-...-....+.+.|.+-|+
T Consensus 307 ~v~~Lq~~W----PGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 307 GVLSLQEIW----PGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hcchHHHhC----CCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 777665554 6678888887 9976555555666666666554
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=111.73 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=87.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CC-cEEEEECCC-CCCCCchhhhhhhhhc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KG-ILVWKLDNR-GTARRGLKFEASIKHN 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G-~~v~~~d~r-g~g~~~~~~~~~~~~~ 613 (776)
++..+|.|... ...+++|+||++|||+........+ ....++. .+ ++|+.++|| |..++...... ..
T Consensus 79 l~l~i~~p~~~-~~~~~~pv~v~ihGG~~~~g~~~~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~ 148 (493)
T cd00312 79 LYLNVYTPKNT-KPGNSLPVMVWIHGGGFMFGSGSLY------PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---EL 148 (493)
T ss_pred CeEEEEeCCCC-CCCCCCCEEEEEcCCccccCCCCCC------ChHHHHhcCCCEEEEEecccccccccccCCCC---CC
Confidence 78888888753 1225789999999986543211111 1234443 44 999999999 55443321111 11
Q ss_pred cCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCC
Q 004067 614 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 674 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~ 674 (776)
.+...+.|+..+++|+.++ ...|+++|.|+|+|.||++++.++.. .+.+|+++|+.++...
T Consensus 149 ~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 149 PGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 2233478999999999875 35799999999999999999998876 2457888888877543
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-06 Score=86.67 Aligned_cols=328 Identities=12% Similarity=0.044 Sum_probs=189.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++++.+++|+..+.+++.++ -+++||...-+..++... -.++.+..+-+.+
T Consensus 195 vtsL~~~~d~~~~ls~~RDk-----vi~vwd~~~~~~l~~lp~------------------------ye~~E~vv~l~~~ 245 (775)
T KOG0319|consen 195 VTSLAFSEDSLELLSVGRDK-----VIIVWDLVQYKKLKTLPL------------------------YESLESVVRLREE 245 (775)
T ss_pred eeeeeeccCCceEEEeccCc-----EEEEeehhhhhhhheech------------------------hhheeeEEEechh
Confidence 48999999999998877643 689999854433211110 0134444555511
Q ss_pred CC--ceEEEEe-CCCcEEEEeCCCCcccee--cCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee-EEeeCCC
Q 004067 137 SK--KKIIMVP-LPDGIYFQDLSCSKPELK--LSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR-QLTHGAN 210 (776)
Q Consensus 137 ~d--g~~l~~~-~~~~l~~~d~~~~~~~~~--l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~-~lt~~~~ 210 (776)
-+ |.+++.. ..+.+..||.++++.... -.+.+. -.......-+++.++.+.+.+|++++.++.+.. ++.-..
T Consensus 246 ~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e-~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n- 323 (775)
T KOG0319|consen 246 LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE-IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN- 323 (775)
T ss_pred cCCcceEEEEecCCceEEEEecccchhhhhhccCCchh-hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc-
Confidence 12 3344433 556788999999876511 111222 133345566888888888899999988877653 332211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
+.+++ --.|.|+.+.|+.++.. ..+.+|
T Consensus 324 ---------dEI~D-------m~~lG~e~~~laVATNs------------------------------------~~lr~y 351 (775)
T KOG0319|consen 324 ---------DEILD-------MKFLGPEESHLAVATNS------------------------------------PELRLY 351 (775)
T ss_pred ---------hhhee-------eeecCCccceEEEEeCC------------------------------------CceEEE
Confidence 11111 12378888988887632 346777
Q ss_pred EcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE-----EEeccCceeec
Q 004067 291 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI-----LVEELDSWVNL 365 (776)
Q Consensus 291 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l-----~~~~~~~~~~~ 365 (776)
+..+-....+ .+|...+..+.-+.+|-+|+..+ ++..+.+|-++.+..+.+ +.+....-. .
T Consensus 352 ~~~~~~c~ii---------~GH~e~vlSL~~~~~g~llat~s----KD~svilWr~~~~~~~~~~~a~~~gH~~svga-v 417 (775)
T KOG0319|consen 352 TLPTSYCQII---------PGHTEAVLSLDVWSSGDLLATGS----KDKSVILWRLNNNCSKSLCVAQANGHTNSVGA-V 417 (775)
T ss_pred ecCCCceEEE---------eCchhheeeeeecccCcEEEEec----CCceEEEEEecCCcchhhhhhhhcccccccce-e
Confidence 8888777755 66777777777556674444333 333444454444333222 112111000 0
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee----cc----c--cCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG----PI----T--EGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~----~l----t--~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.+ +..+-.++.+...+. .|.+|++...+.. .+ + .++-++..+. .+|+.+ |+.+++.+
T Consensus 418 --a~-------~~~~asffvsvS~D~--tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va-ia~ndk-LiAT~SqD 484 (775)
T KOG0319|consen 418 --AG-------SKLGASFFVSVSQDC--TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA-IAPNDK-LIATGSQD 484 (775)
T ss_pred --ee-------cccCccEEEEecCCc--eEEEecCCCcccccccceehhhHHHHhhcccccceE-ecCCCc-eEEecccc
Confidence 00 111112444444455 7888887653221 11 1 1344555554 889877 66676666
Q ss_pred CCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
.. .+||.+.- +. -.-.|..+. |+..++|||..+ ++.++|++.+ |.+|..++.+.++++.
T Consensus 485 kt--aKiW~le~---~~----l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~T---vKIW~is~fSClkT~e 544 (775)
T KOG0319|consen 485 KT--AKIWDLEQ---LR----LLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKT---VKIWSISTFSCLKTFE 544 (775)
T ss_pred cc--eeeecccC---ce----EEEEeeCCccceEEEEeccccc-eeEeccCCce---EEEEEeccceeeeeec
Confidence 54 78999872 21 344555554 789999999986 4455555553 7888888998888775
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-06 Score=90.40 Aligned_cols=328 Identities=11% Similarity=0.077 Sum_probs=188.5
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
.++||++|+.|+-.-. ..|-..|.+++... +.. ++++. ..-+.++..+| |
T Consensus 24 ~~~~s~nG~~L~t~~~------d~Vi~idv~t~~~~-l~s----------~~~ed----------~d~ita~~l~~---d 73 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTACG------DRVIIIDVATGSIA-LPS----------GSNED----------EDEITALALTP---D 73 (775)
T ss_pred ceeECCCCCEEEEecC------ceEEEEEccCCcee-ccc----------CCccc----------hhhhheeeecC---C
Confidence 3899999999985433 34888999988763 221 11111 13467889999 9
Q ss_pred ceEEEEeCCCc-EEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCceec
Q 004067 139 KKIIMVPLPDG-IYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 139 g~~l~~~~~~~-l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
++.|+....+. |-+|++.+++..+........++...+|+|-|..++-.. ++.+-+||.+.+..+--. .+.+
T Consensus 74 ~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~g----- 147 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHG----- 147 (775)
T ss_pred ccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCC-----
Confidence 99999885554 678999999877333332334578899999996555543 467999999987654221 2211
Q ss_pred CCcccceecccCCcceEEECCCCCe-EEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKF-IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
+.+.++.|.|+-++ |++.... ...+++||+.++
T Consensus 148 -----------GvVssl~F~~~~~~~lL~sg~~-----------------------------------D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 148 -----------GVVSSLLFHPHWNRWLLASGAT-----------------------------------DGTVRVWNLNDK 181 (775)
T ss_pred -----------ceEEEEEeCCccchhheeecCC-----------------------------------CceEEEEEcccC
Confidence 11446778888664 3333221 156899999876
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
.. .+.. ...+...+..+.+++|+..++... .+..+++||+.+-+...+...... ++. ..+.+...+
T Consensus 182 ~t-cl~~------~~~H~S~vtsL~~~~d~~~~ls~~----RDkvi~vwd~~~~~~l~~lp~ye~--~E~-vv~l~~~~~ 247 (775)
T KOG0319|consen 182 RT-CLHT------MILHKSAVTSLAFSEDSLELLSVG----RDKVIIVWDLVQYKKLKTLPLYES--LES-VVRLREELG 247 (775)
T ss_pred ch-HHHH------HHhhhhheeeeeeccCCceEEEec----cCcEEEEeehhhhhhhheechhhh--eee-EEEechhcC
Confidence 65 1111 034666788999999998776664 455689999965443222221111 000 001111100
Q ss_pred ccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC--eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCC
Q 004067 376 VTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD--WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNH 453 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~--~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~ 453 (776)
- .+.++++...+| .+..|+.++++........ ............++.+.+++ +. +.-|| +.+ ...
T Consensus 248 --~-~~~~~~TaG~~g--~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta-eQ---nl~l~--d~~-~l~- 314 (775)
T KOG0319|consen 248 --G-KGEYIITAGGSG--VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA-EQ---NLFLY--DED-ELT- 314 (775)
T ss_pred --C-cceEEEEecCCc--eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc-cc---eEEEE--Ecc-ccE-
Confidence 0 023555555556 8888998887633222111 11222332344455444443 21 23444 431 111
Q ss_pred ccccceeecCC-CCeEEE-EEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 454 TLEAPVKLTNG-KGKHVA-VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 454 ~~~~~~~l~~~-~~~~~~-~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
..+++-.. +-+.+. -+-|+.++|+....+ |++.+++.++-..
T Consensus 315 ---i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs----~~lr~y~~~~~~c 358 (775)
T KOG0319|consen 315 ---IVKQIVGYNDEILDMKFLGPEESHLAVATNS----PELRLYTLPTSYC 358 (775)
T ss_pred ---EehhhcCCchhheeeeecCCccceEEEEeCC----CceEEEecCCCce
Confidence 22223221 223444 667888888888766 5688888766654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-05 Score=76.39 Aligned_cols=283 Identities=14% Similarity=0.143 Sum_probs=155.3
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----------CcEEEEecCCCceeEEeeCCCCCceec
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----------CELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----------~~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
+.+|++|.+.++..-.+..+ ...++..||||+.++.... .-|-+||.+|=..+.-..-+...+...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g---~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG---FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE---SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc---cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 57999999988876344332 3556889999998876542 127788888765433211111101111
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 296 (776)
... ...+..|+|||++++.... +...+-|+|++.++
T Consensus 94 ~~~----------~~~~~ls~dgk~~~V~N~T----------------------------------Pa~SVtVVDl~~~k 129 (342)
T PF06433_consen 94 VPY----------KNMFALSADGKFLYVQNFT----------------------------------PATSVTVVDLAAKK 129 (342)
T ss_dssp S------------GGGEEE-TTSSEEEEEEES----------------------------------SSEEEEEEETTTTE
T ss_pred ccc----------ccceEEccCCcEEEEEccC----------------------------------CCCeEEEEECCCCc
Confidence 111 2356799999998876542 22678999999998
Q ss_pred eEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceee-cccccccCCC
Q 004067 297 VSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN-LHDCFTPLDK 374 (776)
Q Consensus 297 ~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~ 374 (776)
... ++ .++...++. +++..+. ..+ .+ +...-+.+|.+ |+..+.... .+.. .++.|.-..
T Consensus 130 vv~ei~--------~PGC~~iyP---~~~~~F~-~lC-~D-Gsl~~v~Ld~~-Gk~~~~~t~---~F~~~~dp~f~~~~- 190 (342)
T PF06433_consen 130 VVGEID--------TPGCWLIYP---SGNRGFS-MLC-GD-GSLLTVTLDAD-GKEAQKSTK---VFDPDDDPLFEHPA- 190 (342)
T ss_dssp EEEEEE--------GTSEEEEEE---EETTEEE-EEE-TT-SCEEEEEETST-SSEEEEEEE---ESSTTTS-B-S--E-
T ss_pred eeeeec--------CCCEEEEEe---cCCCceE-EEe-cC-CceEEEEECCC-CCEeEeecc---ccCCCCcccccccc-
Confidence 754 33 344555443 3333322 222 22 23333444444 444322211 1111 122221110
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCceeec------ccc----CCeEEE--EEEeecCCCcEEEEEEccCC-----C
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP------ITE----GDWMVE--QIVGVNEASGQVYFTGTLDG-----P 437 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~------lt~----~~~~~~--~~~~~s~dg~~i~~~~~~~~-----~ 437 (776)
....++.++|.+ -.| .+|..++.+...+. ++. ..|... ++.++++..++||+...... .
T Consensus 191 -~~~~~~~~~F~S-y~G--~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 191 -YSRDGGRLYFVS-YEG--NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp -EETTTTEEEEEB-TTS--EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred -eECCCCeEEEEe-cCC--EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 123355678766 456 89999988775322 221 244433 34567777888888764311 1
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
.-.+||.+++.+ + ..+.++.-...+.++.+|-|.+=++|..+..+ ..|+++|..+|+.++.+.
T Consensus 267 pgteVWv~D~~t-~----krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 267 PGTEVWVYDLKT-H----KRVARIPLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -EEEEEEEETTT-T----EEEEEEEEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT--EEEEE-
T ss_pred CceEEEEEECCC-C----eEEEEEeCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcCCcEEeehh
Confidence 236899999852 3 25666664433447899999998998876544 479999999998776653
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.7e-06 Score=90.54 Aligned_cols=267 Identities=16% Similarity=0.144 Sum_probs=159.3
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCC--ceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTC--KQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+.+.|-|||+.|..... + +.|..|+...- +++.+-. .+.......-
T Consensus 17 t~i~~d~~gefi~tcgs-d----g~ir~~~~~sd~e~P~ti~~--------------------------~g~~v~~ia~- 64 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGS-D----GDIRKWKTNSDEEEPETIDI--------------------------SGELVSSIAC- 64 (933)
T ss_pred EEEEEcCCCCEEEEecC-C----CceEEeecCCcccCCchhhc--------------------------cCceeEEEee-
Confidence 88999999997765443 2 34777765433 2222210 1333344444
Q ss_pred CCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
++.+++. +.++.|.++....++....|+...- ++....++-+|+++|+.++. .|-++++.++...........
T Consensus 65 --~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-- 139 (933)
T KOG1274|consen 65 --YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-- 139 (933)
T ss_pred --cccceEEeeccceEEEeeCCCCCccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--
Confidence 4555554 4778898998887776623333322 47889999999999999875 588888887665544433221
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+..+.++|.|+.||..+.+ ..|++||+.
T Consensus 140 ---------------pVl~l~~~p~~~fLAvss~d------------------------------------G~v~iw~~~ 168 (933)
T KOG1274|consen 140 ---------------PVLQLSYDPKGNFLAVSSCD------------------------------------GKVQIWDLQ 168 (933)
T ss_pred ---------------ceeeeeEcCCCCEEEEEecC------------------------------------ceEEEEEcc
Confidence 15578899999999987754 458999999
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe--ccCceeeccccccc
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE--ELDSWVNLHDCFTP 371 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~~~~~~ 371 (776)
++.....-......-.......+..++|+|+|..+++.. .+..+.+|+.++.+..-.... ....+...
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~----~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~------ 238 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP----VDNTVKVYSRKGWELQFKLRDKLSSSKFSDL------ 238 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeec----cCCeEEEEccCCceeheeecccccccceEEE------
Confidence 887543211100000111234567899999966555554 355688999888776433222 22222211
Q ss_pred CCCCccccCCe-EEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 372 LDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 372 ~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
+|++.+ ++.++.-+| .|.+||.++-+. -.....|... .|-|+...|-+...
T Consensus 239 -----~wsPnG~YiAAs~~~g--~I~vWnv~t~~~---~~~~~~Vc~~-aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 239 -----QWSPNGKYIAASTLDG--QILVWNVDTHER---HEFKRAVCCE-AWKPNANAITLITA 290 (933)
T ss_pred -----EEcCCCcEEeeeccCC--cEEEEecccchh---ccccceeEEE-ecCCCCCeeEEEee
Confidence 333433 555666677 899999876221 1112233333 36666655555543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-05 Score=85.05 Aligned_cols=284 Identities=15% Similarity=0.064 Sum_probs=170.0
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ 204 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~ 204 (776)
.+.++.+|. |...++...++.|.+|+.++.+..++++.+ .+....|-|-+++|+.... +.|-++++++.....
T Consensus 375 dVRsl~vS~---d~~~~~Sga~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 375 DVRSLCVSS---DSILLASGAGESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred heeEEEeec---CceeeeecCCCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 578899998 888888888899999999988776466543 4677899999998888764 679999998875433
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
......+ .+..++-+||++..+..+.|.. +.-|.+.
T Consensus 449 ti~AHdg-----------------aIWsi~~~pD~~g~vT~saDkt-VkfWdf~-------------------------- 484 (888)
T KOG0306|consen 449 TIRAHDG-----------------AIWSISLSPDNKGFVTGSADKT-VKFWDFK-------------------------- 484 (888)
T ss_pred hhhcccc-----------------ceeeeeecCCCCceEEecCCcE-EEEEeEE--------------------------
Confidence 3221111 1335778999999888775432 1111111
Q ss_pred EEEEEEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCce
Q 004067 285 VRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSW 362 (776)
Q Consensus 285 ~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~ 362 (776)
.+.+ ..|. .+.+.+. +.+...-...+..+++||||++++...- +.++.+|-+++=+. -.++.|.-+.-
T Consensus 485 ---l~~~-~~gt~~k~lsl~--~~rtLel~ddvL~v~~Spdgk~LaVsLL----dnTVkVyflDtlKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 485 ---LVVS-VPGTQKKVLSLK--HTRTLELEDDVLCVSVSPDGKLLAVSLL----DNTVKVYFLDTLKFFLSLYGHKLPVL 554 (888)
T ss_pred ---EEec-cCcccceeeeec--cceEEeccccEEEEEEcCCCcEEEEEec----cCeEEEEEecceeeeeeeccccccee
Confidence 0111 1111 1112111 0000122345778999999998877652 22344444444333 34555554432
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
..+ .+| ++..+.+...+. ++.+|.++=|. .+.+-.++..+..+. |=|+ .+++|+.+.++ .
T Consensus 555 smD---IS~--------DSklivTgSADK--nVKiWGLdFGDCHKS~fAHdDSvm~V~-F~P~-~~~FFt~gKD~----k 615 (888)
T KOG0306|consen 555 SMD---ISP--------DSKLIVTGSADK--NVKIWGLDFGDCHKSFFAHDDSVMSVQ-FLPK-THLFFTCGKDG----K 615 (888)
T ss_pred EEe---ccC--------CcCeEEeccCCC--ceEEeccccchhhhhhhcccCceeEEE-Eccc-ceeEEEecCcc----e
Confidence 221 223 344666655555 88899888665 455666676766665 7674 66888887764 3
Q ss_pred EEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 442 LYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 442 l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+-..+. .. -..++.|..+.. ++-.+.+|+|.+++-.++ +. .|..|..
T Consensus 616 vKqWDg----~k-Fe~iq~L~~H~~ev~cLav~~~G~~vvs~sh--D~--sIRlwE~ 663 (888)
T KOG0306|consen 616 VKQWDG----EK-FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH--DK--SIRLWER 663 (888)
T ss_pred EEeech----hh-hhhheeeccchheeeeeEEcCCCCeEEeccC--Cc--eeEeeec
Confidence 333332 10 024666665543 566799999987665433 22 4666665
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-08 Score=101.94 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHH--hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR--SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~--~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
..|++|++||...... ...|.. .++..|. ...|.|+++|++|+|.+......... ....+++.+.+++|.
T Consensus 40 ~~ptvIlIHG~~~s~~-~~~w~~---~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t----~~vg~~la~lI~~L~ 111 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGM-FESWVP---KLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYT----KLVGKDVAKFVNWMQ 111 (442)
T ss_pred CCCeEEEECCCCcCCc-chhhHH---HHHHHHHhccCCCEEEEEECCCcCCCCCccccccH----HHHHHHHHHHHHHHH
Confidence 3488999999765321 122321 1233333 23699999999998865422110000 112356777788776
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
+...++.+++.|+||||||++|..++...|.++..++++.|..
T Consensus 112 ~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 112 EEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred HhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 6544577899999999999999999998899999999988764
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5e-05 Score=81.89 Aligned_cols=343 Identities=10% Similarity=0.001 Sum_probs=185.4
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCC
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCS 158 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~ 158 (776)
++|.+.|+..++.-.-+.++. ..+.+.+|.- ||.-+... ..|++.+||++..
T Consensus 224 G~ViifNlK~dkil~sFk~d~-----------------------g~VtslSFrt---DG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 224 GTVIIFNLKFDKILMSFKQDW-----------------------GRVTSLSFRT---DGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred ceEEEEEcccCcEEEEEEccc-----------------------cceeEEEecc---CCCeeEEeccCCceEEEEEcCCC
Confidence 568888888777544443321 3688999999 99998876 4578999999998
Q ss_pred ccceecCCCCCCCccCceeCCCCCEEEEEEC--C--cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEE
Q 004067 159 KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--C--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYW 234 (776)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (776)
+....+.....+.+....|-|.-. +++++. + .+|+.|.-+|..|+|-...+...-.. -++
T Consensus 278 kl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~---------------~ir 341 (910)
T KOG1539|consen 278 KLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS---------------CIR 341 (910)
T ss_pred eeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch---------------hee
Confidence 877222212222355666666554 444432 2 48888977888888876443321111 122
Q ss_pred E-CCCCCeEEEEEecCCC----------CCeEEE--eecC--------CCCCCCCCcceecCCCC--CCC-------CCe
Q 004067 235 W-SLDSKFIAFTQVDSSE----------IPRFRI--MHQG--------KSSVGSEAQEDHAYPFA--GAS-------NVK 284 (776)
Q Consensus 235 w-spDg~~l~~~~~~~~~----------~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~--g~~-------~~~ 284 (776)
| --.|..|.-.+.|++- ....-. .... ......+......+..+ .++ .+.
T Consensus 342 fy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 342 FYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred eeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence 2 2445555554444320 000000 0000 00000111111111111 111 123
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE----eccC
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV----EELD 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~~~ 360 (776)
.+++.|+...+..=...+. +.++.+.+..+..++.|+-|...+...+ .+.|-+|++.+|-.+--+. +..+
T Consensus 422 ~~~~tW~~~n~~~G~~~L~--~~~~~~~~~~~~av~vs~CGNF~~IG~S----~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLD--PKRFKKDDINATAVCVSFCGNFVFIGYS----KGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred ceEEEEeccCcccccEEec--CccccccCcceEEEEEeccCceEEEecc----CCeEEEEEcccCeeecccccCccccCc
Confidence 5688888876554222221 1122335667888999999997776653 4468888888876554331 1111
Q ss_pred ceeecccccccCCCCccccC-CeEEEEeccCC---------------------------------------ceEEEEEeC
Q 004067 361 SWVNLHDCFTPLDKGVTKYS-GGFIWASEKTG---------------------------------------FRHLYLHDI 400 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g---------------------------------------~~~l~~~~~ 400 (776)
- .+++-|+ ++.+.++..+| .-.|.++|.
T Consensus 496 -V-----------~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 496 -V-----------TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred -e-----------eEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 0 0001111 01111111122 235666665
Q ss_pred CCcee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEE
Q 004067 401 NGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNF 479 (776)
Q Consensus 401 ~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l 479 (776)
.+.+. +.+-.+...+..+. ||+||++|+..+.+. . +.+|++.. |. .+-.+--.....+++|||+|.+|
T Consensus 564 ~t~kvvR~f~gh~nritd~~-FS~DgrWlisasmD~-t--Ir~wDlpt---~~----lID~~~vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 564 VTRKVVREFWGHGNRITDMT-FSPDGRWLISASMDS-T--IRTWDLPT---GT----LIDGLLVDSPCTSLSFSPNGDFL 632 (910)
T ss_pred hhhhhhHHhhccccceeeeE-eCCCCcEEEEeecCC-c--EEEEeccC---cc----eeeeEecCCcceeeEECCCCCEE
Confidence 55443 34444555666665 999999877776643 2 78888875 32 23233223334578999999999
Q ss_pred EEEeeCCCCCCEEEEEEc
Q 004067 480 VDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 480 ~~~~~~~~~~~~i~~~~~ 497 (776)
|.++.... .||+|..
T Consensus 633 AT~Hvd~~---gIylWsN 647 (910)
T KOG1539|consen 633 ATVHVDQN---GIYLWSN 647 (910)
T ss_pred EEEEecCc---eEEEEEc
Confidence 99987755 3787764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-05 Score=80.52 Aligned_cols=314 Identities=12% Similarity=0.085 Sum_probs=177.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
+...+|++|+..||.... .+++.+...++ ..++.. .......-|||
T Consensus 38 ~v~~~S~~G~lfA~~~~~------~v~i~~~~~~~-~~lt~~------------------------~~~~~~L~fSP--- 83 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQ------VVKVFEIATLK-VVLCVE------------------------LKKTYDLLFSP--- 83 (566)
T ss_pred eeEEEcCCCcEEEEEcCC------eEEEEEccCCc-EEEEec------------------------cceeeeeeecc---
Confidence 567899999999998653 48888888775 333321 12466778899
Q ss_pred CceEEEEe-----------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc--eeE
Q 004067 138 KKKIIMVP-----------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE--QRQ 204 (776)
Q Consensus 138 dg~~l~~~-----------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~--~~~ 204 (776)
-|.+|..- ..-.+.+|+++++..+..+..... ....++||+|....|.+..++++.+++.+-. ...
T Consensus 84 ~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q-~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k 162 (566)
T KOG2315|consen 84 KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ-NGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK 162 (566)
T ss_pred cccccccccccccccCCCCCCCceeeeeeccceehhheehhhh-cCcccccccchhhhhhhhcceEEEEecCCccceeee
Confidence 88887753 223477888888554422211111 1358999999999999999999999887622 222
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCC--eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSK--FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
|... ++..+..||-+. .||+-.-... ...
T Consensus 163 l~~~--------------------~i~~f~lSpgp~~~~vAvyvPe~k-----------------------------GaP 193 (566)
T KOG2315|consen 163 LSVS--------------------GITMLSLSPGPEPPFVAVYVPEKK-----------------------------GAP 193 (566)
T ss_pred eecc--------------------ceeeEEecCCCCCceEEEEccCCC-----------------------------CCC
Confidence 3211 144677887543 4443221111 111
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecC-------ceEEEEEEECCCCceEEE
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQ-------TKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~-------~~~~l~~~d~~~g~~~~l 354 (776)
....||-+. ..+....+... .++. ..-....|.+-|. .|+.++..-. +...||+++.+ |+...+
T Consensus 194 a~vri~~~~-~~~~~~~~a~k----sFFk--adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V 265 (566)
T KOG2315|consen 194 ASVRIYKYP-EEGQHQPVANK----SFFK--ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSV 265 (566)
T ss_pred cEEEEeccc-cccccchhhhc----cccc--cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEE
Confidence 223333333 11211111100 0011 1223467888887 4444433211 24689999988 333333
Q ss_pred -EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 355 -LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 355 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
....++.... .|+| ++..|..+- .--...+-++|+.+....-+.++.. +-.-|+|.|..|++.+-
T Consensus 266 ~L~k~GPVhdv---~W~~-------s~~EF~Vvy-GfMPAkvtifnlr~~~v~df~egpR---N~~~fnp~g~ii~lAGF 331 (566)
T KOG2315|consen 266 PLLKEGPVHDV---TWSP-------SGREFAVVY-GFMPAKVTIFNLRGKPVFDFPEGPR---NTAFFNPHGNIILLAGF 331 (566)
T ss_pred ecCCCCCceEE---EECC-------CCCEEEEEE-ecccceEEEEcCCCCEeEeCCCCCc---cceEECCCCCEEEEeec
Confidence 2223332211 1222 122243322 1112467788888877666665542 23349999999888887
Q ss_pred cCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
.+-++..++|++.-. ..+..+... ...-..|+|||++|+....+
T Consensus 332 GNL~G~mEvwDv~n~-------K~i~~~~a~-~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNR-------KLIAKFKAA-NTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CCCCCceEEEeccch-------hhccccccC-CceEEEEcCCCcEEEEEecc
Confidence 776777899988731 122233222 23345999999999887655
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-06 Score=88.46 Aligned_cols=267 Identities=10% Similarity=0.015 Sum_probs=172.2
Q ss_pred hcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCC----CCCCCccCceeCCCCCEEEEEEC-CcEEEEec
Q 004067 123 RGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSS----SSCSPVIDPHLSSDGTMIAFVRD-CELHVLNL 197 (776)
Q Consensus 123 ~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~----~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l 197 (776)
++.=+.+...|. ..++++....+.|.+||+.+...+.++.. .....++....+|||+.|+.-.. ..|-+|||
T Consensus 418 HGEvVcAvtIS~---~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 418 HGEVVCAVTISN---PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred cCcEEEEEEecC---CcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 334456788887 88888888889999999987654412211 12234777899999999987765 46899999
Q ss_pred CCCcee---EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 198 LINEQR---QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 198 ~~g~~~---~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
+.-..+ +|+..... -.+++.|||.| ++|..-..
T Consensus 495 AapTprikaeltssapa------------------CyALa~spDak-vcFsccsd------------------------- 530 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPA------------------CYALAISPDAK-VCFSCCSD------------------------- 530 (705)
T ss_pred cCCCcchhhhcCCcchh------------------hhhhhcCCccc-eeeeeccC-------------------------
Confidence 876543 23322111 12677899998 77876433
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|.|||+......+- +.++......+..|+||..|.. +.-+..+.-||+..|..-+-
T Consensus 531 ----------GnI~vwDLhnq~~Vrq--------fqGhtDGascIdis~dGtklWT----GGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 531 ----------GNIAVWDLHNQTLVRQ--------FQGHTDGASCIDISKDGTKLWT----GGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred ----------CcEEEEEcccceeeec--------ccCCCCCceeEEecCCCceeec----CCCccceeehhhhhhhhhhh
Confidence 2378999877654332 2566677788999999986643 33567799999987653221
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
..-..-.++-. +.|. ++ ++.+.-+++ ++++....+.+..+|..++.-|.++- |++-|++++-+ ..
T Consensus 589 hdF~SQIfSLg---~cP~-------~d-WlavGMens--~vevlh~skp~kyqlhlheScVLSlK-Fa~cGkwfvSt-Gk 653 (705)
T KOG0639|consen 589 HDFSSQIFSLG---YCPT-------GD-WLAVGMENS--NVEVLHTSKPEKYQLHLHESCVLSLK-FAYCGKWFVST-GK 653 (705)
T ss_pred hhhhhhheecc---cCCC-------cc-ceeeecccC--cEEEEecCCccceeecccccEEEEEE-ecccCceeeec-Cc
Confidence 11111122111 2232 22 344444455 78888888888899998887777765 99999953333 33
Q ss_pred CCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEE
Q 004067 435 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDF 482 (776)
Q Consensus 435 ~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~ 482 (776)
++. ...|+... |. .+-++.....+....+|-|.+++|..
T Consensus 654 Dnl--LnawrtPy---Ga----siFqskE~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 654 DNL--LNAWRTPY---GA----SIFQSKESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred hhh--hhhccCcc---cc----ceeeccccCcceeeeeccCceEEEec
Confidence 333 67888885 32 44555544456677889999877655
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.9e-07 Score=95.59 Aligned_cols=184 Identities=15% Similarity=0.196 Sum_probs=123.9
Q ss_pred cceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEeC-CCcEEEEeCCCC
Q 004067 80 SRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPL-PDGIYFQDLSCS 158 (776)
Q Consensus 80 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~-~~~l~~~d~~~~ 158 (776)
...|-++....+++..+... ....+....++. +|+.+++.. +..|.++++..+
T Consensus 75 ~~tv~~y~fps~~~~~iL~R-----------------------ftlp~r~~~v~g---~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILAR-----------------------FTLPIRDLAVSG---SGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cceEEEeeCCCCCccceeee-----------------------eeccceEEEEec---CCcEEEeecCceeEEEEecccc
Confidence 35688888877776533321 013677888999 999999984 456889998877
Q ss_pred ccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCcee-EEeeCCCCCceecCCcccceecc-cCCcceEEE
Q 004067 159 KPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQR-QLTHGANGNTVTHGLAEYIAQEE-MDRKTGYWW 235 (776)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w 235 (776)
..+ ....+..+.+..+.++|.|..||.++ ++.|++|+++++... .++.-... .+.+ -.....++|
T Consensus 129 s~~-~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-----------n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 129 SQE-KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-----------NEFILSRICTRLAW 196 (933)
T ss_pred chh-eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc-----------ccccccceeeeeee
Confidence 766 44444445689999999999999886 579999999988653 22221110 0111 112457899
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcc
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEE 314 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~ 314 (776)
+|||..+++...+ ..+.+|+.++.+..- +.. .....
T Consensus 197 ~Pk~g~la~~~~d------------------------------------~~Vkvy~r~~we~~f~Lr~-------~~~ss 233 (933)
T KOG1274|consen 197 HPKGGTLAVPPVD------------------------------------NTVKVYSRKGWELQFKLRD-------KLSSS 233 (933)
T ss_pred cCCCCeEEeeccC------------------------------------CeEEEEccCCceeheeecc-------ccccc
Confidence 9998888876643 346777777765432 211 11222
Q ss_pred eEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 315 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 315 ~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
.+..+.|||.|++|+... -+..|.+||.++
T Consensus 234 ~~~~~~wsPnG~YiAAs~----~~g~I~vWnv~t 263 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAAST----LDGQILVWNVDT 263 (933)
T ss_pred ceEEEEEcCCCcEEeeec----cCCcEEEEeccc
Confidence 377899999999888765 456788999885
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.2e-06 Score=83.57 Aligned_cols=240 Identities=15% Similarity=0.134 Sum_probs=137.3
Q ss_pred eEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCce-eEE
Q 004067 129 RYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQ-RQL 205 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~-~~l 205 (776)
.+.|.+ +...|++. ..+.|+.|+..+++.+ .+...... ...... |....+++....+++++++++.. +.+
T Consensus 29 gP~w~~---~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~-~~~~~~--d~~g~Lv~~~~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 29 GPVWDP---DRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGF-SSGALI--DAGGRLIACEHGVRLLDPDTGGKITLL 101 (307)
T ss_pred CccCcC---CCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCc-ccceee--cCCCeEEEEccccEEEeccCCceeEEe
Confidence 467999 99988887 6788999999887776 44332211 122222 33345566666788888887777 555
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
+....+. .. -+.+.....|||. ++|..... .. .+ ........
T Consensus 102 ~~~~~~~-~~------------~r~ND~~v~pdG~-~wfgt~~~-----~~---~~----------------~~~~~~~G 143 (307)
T COG3386 102 AEPEDGL-PL------------NRPNDGVVDPDGR-IWFGDMGY-----FD---LG----------------KSEERPTG 143 (307)
T ss_pred ccccCCC-Cc------------CCCCceeEcCCCC-EEEeCCCc-----cc---cC----------------ccccCCcc
Confidence 4332211 11 1234566789887 66654321 00 00 00001113
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC--Cce---E-EEEEecc
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT--GQR---K-VILVEEL 359 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~--g~~---~-~l~~~~~ 359 (776)
.||.+|..++..+.+ ...-..-..++|||||+.++++.. ....|++++.+. +.. + .+.....
T Consensus 144 ~lyr~~p~g~~~~l~---------~~~~~~~NGla~SpDg~tly~aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~ 211 (307)
T COG3386 144 SLYRVDPDGGVVRLL---------DDDLTIPNGLAFSPDGKTLYVADT---PANRIHRYDLDPATGPIGGRRGFVDFDEE 211 (307)
T ss_pred eEEEEcCCCCEEEee---------cCcEEecCceEECCCCCEEEEEeC---CCCeEEEEecCcccCccCCcceEEEccCC
Confidence 689999866555554 222333456999999997777643 234688887752 221 1 1111111
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
...+.++.-|.++.+|.+...+...|-+++++|.....+.-....+....--.++.+.||+++...
T Consensus 212 ----------~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 212 ----------PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ----------CCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 112233455566667755444446899999998777776655333444443467788899998764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-06 Score=82.28 Aligned_cols=215 Identities=15% Similarity=0.151 Sum_probs=122.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE---EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE---LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~---~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+.+|||||.-|.-.+.... .++|-+..+..... .+.... ..+ -++ ..+.-+.++.|=+
T Consensus 53 kgckWSPDGSciL~~sedn~---l~~~nlP~dlys~~~~~~~~~~~-------~~~--~r~------~eg~tvydy~wYs 114 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNC---LNCWNLPFDLYSKKADGPLNFSK-------HLS--YRY------QEGETVYDYCWYS 114 (406)
T ss_pred ccceeCCCCceEEeecccCe---eeEEecChhhcccCCCCcccccc-------cee--EEe------ccCCEEEEEEeee
Confidence 57789999999987776543 34554444322110 000000 000 000 0123456777742
Q ss_pred ----cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCC----CCCccCceeCCCCCEEEEEECCcEEEEecC-CCceeE
Q 004067 135 ----TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSS----CSPVIDPHLSSDGTMIAFVRDCELHVLNLL-INEQRQ 204 (776)
Q Consensus 135 ----~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~la~~~~~~l~~~~l~-~g~~~~ 204 (776)
.-|+....+.+ ++.-|.+||.-+|+.+.-..... -.-+..+.|||||.+|.---.+-|.+++.. .|..-.
T Consensus 115 ~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 115 RMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred ccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCc
Confidence 12255555554 56679999999999872111111 011567899999999988777889999883 453221
Q ss_pred E-eeCCCCCceecCCcccceecccCCcceEEECCC-CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 205 L-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD-SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 205 l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+ +.-..+ .+...+++.-+++||- .+.++..+..
T Consensus 195 vy~t~~~~-----------k~gq~giisc~a~sP~~~~~~a~gsY~---------------------------------- 229 (406)
T KOG2919|consen 195 VYTTVTKG-----------KFGQKGIISCFAFSPMDSKTLAVGSYG---------------------------------- 229 (406)
T ss_pred chhhhhcc-----------cccccceeeeeeccCCCCcceeeeccc----------------------------------
Confidence 1 110000 0111233556788984 5566665531
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..+-+|.-.++.+-.+ +.++.+.++.+.|-+||..++..+ +....|..||+..
T Consensus 230 --q~~giy~~~~~~pl~l--------lggh~gGvThL~~~edGn~lfsGa---Rk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 230 --QRVGIYNDDGRRPLQL--------LGGHGGGVTHLQWCEDGNKLFSGA---RKDDKILCWDIRY 282 (406)
T ss_pred --ceeeeEecCCCCceee--------ecccCCCeeeEEeccCcCeecccc---cCCCeEEEEeehh
Confidence 1234444444444333 256788999999999999776554 2455688999854
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-06 Score=82.57 Aligned_cols=245 Identities=12% Similarity=0.097 Sum_probs=154.3
Q ss_pred CccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 171 PVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 171 ~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
.+....+.|+-..++..+ +..|+++|..+|+..+-..+... + +..++|+.-|+.|+-.+.|
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-----s------------v~di~~~a~Gk~l~tcSsD- 171 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTD-----S------------VFDISFDASGKYLATCSSD- 171 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccc-----c------------eeEEEEecCccEEEecCCc-
Confidence 366677888876555554 35699999999987432222111 1 4478899999988876543
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC--ceEEEEcccCCCCCCCCcceEEEEEeccCCeE
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG--PVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL 327 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~ 327 (776)
.++.+||.++- ..+.+ .++...+..+.|-|-|..
T Consensus 172 -----------------------------------l~~~LWd~~~~~~c~ks~---------~gh~h~vS~V~f~P~gd~ 207 (406)
T KOG0295|consen 172 -----------------------------------LSAKLWDFDTFFRCIKSL---------IGHEHGVSSVFFLPLGDH 207 (406)
T ss_pred -----------------------------------cchhheeHHHHHHHHHHh---------cCcccceeeEEEEecCCe
Confidence 33678887763 12222 567788999999999987
Q ss_pred EEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-
Q 004067 328 TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG- 406 (776)
Q Consensus 328 l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~- 406 (776)
|+..+ .+..|..|+..+|-.......... |+.. +.+.. ++.++.+.+.+. +|-+|-..++...
T Consensus 208 ilS~s----rD~tik~We~~tg~cv~t~~~h~e-wvr~---v~v~~------DGti~As~s~dq--tl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 208 ILSCS----RDNTIKAWECDTGYCVKTFPGHSE-WVRM---VRVNQ------DGTIIASCSNDQ--TLRVWVVATKQCKA 271 (406)
T ss_pred eeecc----cccceeEEecccceeEEeccCchH-hEEE---EEecC------CeeEEEecCCCc--eEEEEEeccchhhh
Confidence 77665 566799999999986544433222 6543 33322 233444444454 8888887776433
Q ss_pred ccccCCeEEEEEEee--------------cCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC-CCeEEEE
Q 004067 407 PITEGDWMVEQIVGV--------------NEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAV 471 (776)
Q Consensus 407 ~lt~~~~~~~~~~~~--------------s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~ 471 (776)
.+..++..+.-. .| +.+|..+.+..+.+.. +++|.+++ |. -+-.|-.+ ..+.+++
T Consensus 272 ~lR~hEh~vEci-~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt--Ik~wdv~t---g~----cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 272 ELREHEHPVECI-AWAPESSYPSISEATGSTNGGQVLGSGSRDKT--IKIWDVST---GM----CLFTLVGHDNWVRGVA 341 (406)
T ss_pred hhhccccceEEE-EecccccCcchhhccCCCCCccEEEeecccce--EEEEeccC---Ce----EEEEEecccceeeeeE
Confidence 334443333211 12 2334456677666655 88999986 32 23333333 3577899
Q ss_pred EcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 472 LDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 472 ~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
|+|-|++|+-.... ..|.+||.++++..+.+.
T Consensus 342 f~p~Gkyi~ScaDD----ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 342 FSPGGKYILSCADD----KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EcCCCeEEEEEecC----CcEEEEEeccceeeeccC
Confidence 99999999877654 248999998888766654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-05 Score=81.97 Aligned_cols=295 Identities=11% Similarity=0.102 Sum_probs=159.2
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCC------cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDH------SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGV 127 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~------~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (776)
...+..+.|||..++|+..+...- ....+|.+||+.+|...+-+...+ +++ .--
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~-----------~~~---------~~W 308 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK-----------SPY---------LKW 308 (698)
T ss_pred CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccC-----------CCc---------ccc
Confidence 344578899999999997765221 134699999999998866553211 000 112
Q ss_pred eeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC------cEEEEecCCCc
Q 004067 128 TRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC------ELHVLNLLINE 201 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~ 201 (776)
.-+.||. |++++|--..+.|.+++...-... ....-.-..+..+.|||-+..|||-... .+-++.+-+++
T Consensus 309 P~frWS~---DdKy~Arm~~~sisIyEtpsf~ll-d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~ 384 (698)
T KOG2314|consen 309 PIFRWSH---DDKYFARMTGNSISIYETPSFMLL-DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR 384 (698)
T ss_pred ceEEecc---CCceeEEeccceEEEEecCceeee-cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc
Confidence 3578999 999999776666666654432111 1111111137889999999999998742 35566666554
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
..+-.. +-+++ .-.+.|-..|++|++-...-..... +..
T Consensus 385 ~iRt~n-------lfnVs----------DckLhWQk~gdyLcvkvdR~tK~~~------------------------~g~ 423 (698)
T KOG2314|consen 385 EIRTKN-------LFNVS----------DCKLHWQKSGDYLCVKVDRHTKSKV------------------------KGQ 423 (698)
T ss_pred eeeecc-------ceeee----------ccEEEeccCCcEEEEEEEeeccccc------------------------cce
Confidence 432211 01111 1156799999999986532211100 000
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEE-EEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTA-QVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
....+|+..+-+.=-+..+.+ ...+..++|-|.|...+ +..+........|....+.+.++.+..-...
T Consensus 424 f~n~eIfrireKdIpve~vel----------ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVVEL----------KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK 493 (698)
T ss_pred EeeEEEEEeeccCCCceeeec----------chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc
Confidence 011333333322222222222 24567899999997444 4444444555677776656665544321110
Q ss_pred ceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
.. ..-.|+|- |+++... -.+-...|+.+|.+-...++....+....+-..|+|.|+++...++
T Consensus 494 ~~--N~vfwsPk--------G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 494 FA--NTVFWSPK--------GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cc--ceEEEcCC--------CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 00 00012331 2343332 2222238899987754444444333332333459999997665543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-06 Score=92.80 Aligned_cols=204 Identities=9% Similarity=0.061 Sum_probs=119.1
Q ss_pred cCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEE-CCcEEEEecCCCc
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVR-DCELHVLNLLINE 201 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~-~~~l~~~~l~~g~ 201 (776)
...|.+.+||. ++-.|-...|.++.+|++...+.- .+..+.. -+..++|.| |.++++--+ +..+.+|++...+
T Consensus 369 t~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL-~~F~Hnd-fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 369 TADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECL-KVFSHND-FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred chhheeccccc---CCeeEeccccccEEeecCCCccee-eEEecCC-eeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence 34678999997 554444558889999999977765 4433333 488999999 666654443 4678899888776
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
+.-.+.-.. .+.++.|+|||+..+..+.++
T Consensus 444 Vv~W~Dl~~------------------lITAvcy~PdGk~avIGt~~G-------------------------------- 473 (712)
T KOG0283|consen 444 VVDWNDLRD------------------LITAVCYSPDGKGAVIGTFNG-------------------------------- 473 (712)
T ss_pred eEeehhhhh------------------hheeEEeccCCceEEEEEecc--------------------------------
Confidence 654443221 266899999999888777542
Q ss_pred CCeEEEEEEEcCCCceEE---EEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 282 NVKVRLGVVSAAGGPVSW---MDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..++|+..+-+... |....+. ......|+.+.|.|-.. .++.++ ++..|.+||.........+..
T Consensus 474 ----~C~fY~t~~lk~~~~~~I~~~~~K---k~~~~rITG~Q~~p~~~~~vLVTS----nDSrIRI~d~~~~~lv~KfKG 542 (712)
T KOG0283|consen 474 ----YCRFYDTEGLKLVSDFHIRLHNKK---KKQGKRITGLQFFPGDPDEVLVTS----NDSRIRIYDGRDKDLVHKFKG 542 (712)
T ss_pred ----EEEEEEccCCeEEEeeeEeeccCc---cccCceeeeeEecCCCCCeEEEec----CCCceEEEeccchhhhhhhcc
Confidence 23444444443221 1111000 11122688889887433 455555 466799999865554333332
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT 403 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~ 403 (776)
....-....+.| +.++..|+..+ ++- .+|+|+.+.-
T Consensus 543 ~~n~~SQ~~Asf-------s~Dgk~IVs~s-eDs--~VYiW~~~~~ 578 (712)
T KOG0283|consen 543 FRNTSSQISASF-------SSDGKHIVSAS-EDS--WVYIWKNDSF 578 (712)
T ss_pred cccCCcceeeeE-------ccCCCEEEEee-cCc--eEEEEeCCCC
Confidence 111000011122 22333455555 333 7999987544
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=89.29 Aligned_cols=171 Identities=16% Similarity=0.070 Sum_probs=86.0
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchh------------hhhhhhhccCC----
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK------------FEASIKHNCGR---- 616 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~------------~~~~~~~~~~~---- 616 (776)
+++-||++||...+..+ |......+...|.+.++..+.+|-+---..+.. ........|-.
T Consensus 3 ~k~riLcLHG~~~na~i---f~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEI---FRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD 79 (212)
T ss_dssp ---EEEEE--TT--HHH---HHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-
T ss_pred CCceEEEeCCCCcCHHH---HHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC
Confidence 45789999998776653 222333445556565899999986521100000 00111112211
Q ss_pred -ccHHHHHHHHHHHHHc----CCCCCCcEEEEeechHHHHHHHHHhhC--------CCceEEEEEcCCCCCccccccccc
Q 004067 617 -IDAEDQLTGAEWLIKQ----GLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPVTSWDGYDTFYT 683 (776)
Q Consensus 617 -~~~~D~~~~i~~l~~~----~~id~~~i~l~G~S~GG~~a~~~a~~~--------~~~~~~~v~~~~~~~~~~~~~~~~ 683 (776)
....++..+++++.+. +.. .+|+|+|.||.+|..++... ...++.+|.+++.......
T Consensus 80 ~~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~----- 150 (212)
T PF03959_consen 80 DHEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD----- 150 (212)
T ss_dssp SGGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE------
T ss_pred cccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh-----
Confidence 1245566666666543 322 48999999999999888631 1246888888876432110
Q ss_pred ccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 684 EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+ .......+++.|+|.++|.+|..++++.+..+++.+... .+++.+++ ||.+
T Consensus 151 -------------~---~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g-GH~v 202 (212)
T PF03959_consen 151 -------------Y---QELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG-GHHV 202 (212)
T ss_dssp -------------G---TTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS-SSS-
T ss_pred -------------h---hhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC-CCcC
Confidence 0 000124456899999999999999999999999998654 67777765 8866
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-06 Score=87.47 Aligned_cols=278 Identities=12% Similarity=-0.000 Sum_probs=159.7
Q ss_pred cCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCC-CccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCC
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSC-SKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLI 199 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~ 199 (776)
..++.+..|.| -.-.|+.. .++.|++|++-+ +...+....+ ...+..+.||++|..++-.+ +..|-+||++|
T Consensus 214 ~kgvsai~~fp---~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 214 TKGVSAIQWFP---KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred ccccchhhhcc---ceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 35788888888 55566655 678899999876 3333133333 33488999999999988776 45799999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
|+..+=...+.- ..-+.+.||+..+++.....
T Consensus 290 G~~~~~f~~~~~------------------~~cvkf~pd~~n~fl~G~sd------------------------------ 321 (503)
T KOG0282|consen 290 GQVLSRFHLDKV------------------PTCVKFHPDNQNIFLVGGSD------------------------------ 321 (503)
T ss_pred ceEEEEEecCCC------------------ceeeecCCCCCcEEEEecCC------------------------------
Confidence 987654333321 22456899997676654321
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
..|..||+.++++.+- ...+-+.+..+.|-++|+..+.++ ++..+.+|+...+..........
T Consensus 322 -----~ki~~wDiRs~kvvqe--------Yd~hLg~i~~i~F~~~g~rFissS----Ddks~riWe~~~~v~ik~i~~~~ 384 (503)
T KOG0282|consen 322 -----KKIRQWDIRSGKVVQE--------YDRHLGAILDITFVDEGRRFISSS----DDKSVRIWENRIPVPIKNIADPE 384 (503)
T ss_pred -----CcEEEEeccchHHHHH--------HHhhhhheeeeEEccCCceEeeec----cCccEEEEEcCCCccchhhcchh
Confidence 4578999999985432 123456788899999999777666 34457777766555422211110
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC----ceeeccccCCeE--EEEEEeecCCCcEEEEEEc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING----TCLGPITEGDWM--VEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g----~~~~~lt~~~~~--~~~~~~~s~dg~~i~~~~~ 433 (776)
. ....--...|.+. .++..+ -+. .|+++...- .+.+.+..+... ... +.|||||++|+.-.
T Consensus 385 ~-hsmP~~~~~P~~~-------~~~aQs-~dN--~i~ifs~~~~~r~nkkK~feGh~vaGys~~-v~fSpDG~~l~SGd- 451 (503)
T KOG0282|consen 385 M-HTMPCLTLHPNGK-------WFAAQS-MDN--YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ-VDFSPDGRTLCSGD- 451 (503)
T ss_pred h-ccCcceecCCCCC-------eehhhc-cCc--eEEEEecccccccCHhhhhcceeccCceee-EEEcCCCCeEEeec-
Confidence 0 0000001112221 122111 122 344433211 112233332111 122 34999999755443
Q ss_pred cCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEE
Q 004067 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLC 495 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~ 495 (776)
.++ ...+|..+.. .....+..+.+ +..+.|-|-...-+.+++= .+.|.+|
T Consensus 452 sdG--~v~~wdwkt~-------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w---~G~Ikiw 502 (503)
T KOG0282|consen 452 SDG--KVNFWDWKTT-------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGW---DGLIKIW 502 (503)
T ss_pred CCc--cEEEeechhh-------hhhhccccCCcceEEEEecCCCcceeEeccc---CceeEec
Confidence 333 3667777642 25666666644 4577888887766666542 2345554
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.9e-07 Score=82.93 Aligned_cols=195 Identities=16% Similarity=0.157 Sum_probs=106.4
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC-chhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR-GLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~-~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
+.-+++|-|-|++. .....| ...|.. .+.++.+.+||.+.. +.++ ..|+...++.+..
T Consensus 7 ~~~L~cfP~AGGsa-~~fr~W-------~~~lp~-~iel~avqlPGR~~r~~ep~------------~~di~~Lad~la~ 65 (244)
T COG3208 7 RLRLFCFPHAGGSA-SLFRSW-------SRRLPA-DIELLAVQLPGRGDRFGEPL------------LTDIESLADELAN 65 (244)
T ss_pred CceEEEecCCCCCH-HHHHHH-------HhhCCc-hhheeeecCCCcccccCCcc------------cccHHHHHHHHHH
Confidence 33455566655443 322222 333333 589999999988754 2211 3345555555544
Q ss_pred c-C-CCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEc---CCCCCccc----c-cccccc---cccCCCCC---
Q 004067 632 Q-G-LAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSG---APVTSWDG----Y-DTFYTE---KYMGLPSE--- 692 (776)
Q Consensus 632 ~-~-~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~---~~~~~~~~----~-~~~~~~---~~~~~~~~--- 692 (776)
. . ..-....+++||||||++|.-+|.+.. ....+..+. +|..+-.. . +..+.+ .+-|.|.+
T Consensus 66 el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p~e~le 145 (244)
T COG3208 66 ELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLE 145 (244)
T ss_pred HhccccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCChHHhc
Confidence 3 1 123357999999999999999986521 112333322 23111100 0 000101 11233321
Q ss_pred CccchhcCCh-----------hh--hhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCC
Q 004067 693 DPVGYEYSSV-----------MH--HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 759 (776)
Q Consensus 693 ~~~~~~~~~~-----------~~--~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 759 (776)
+.+.+...-| .. .-..+.+|+.++.|++|..+..+......+.. +..+++.+++| ||.+ -..
T Consensus 146 d~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t---~~~f~l~~fdG-gHFf-l~~ 220 (244)
T COG3208 146 DPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHT---KGDFTLRVFDG-GHFF-LNQ 220 (244)
T ss_pred CHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhh---cCCceEEEecC-ccee-hhh
Confidence 2111111100 01 12467799999999999998776665555544 56899999987 9977 445
Q ss_pred cHHHHHHHHHHHHH
Q 004067 760 DRIYMEERIWEFIE 773 (776)
Q Consensus 760 ~~~~~~~~~~~fl~ 773 (776)
...++...+.+.+.
T Consensus 221 ~~~~v~~~i~~~l~ 234 (244)
T COG3208 221 QREEVLARLEQHLA 234 (244)
T ss_pred hHHHHHHHHHHHhh
Confidence 66667777766664
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-05 Score=81.09 Aligned_cols=315 Identities=11% Similarity=0.012 Sum_probs=173.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+...+|||-|.++++.... +|-+|.-.... .++.. .+..+..+.|||
T Consensus 35 ~~~~~~SP~G~~l~~~~~~------~V~~~~g~~~~--~l~~~-----------------------~~~~V~~~~fSP-- 81 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAA------GVECWGGPSKA--KLVRF-----------------------RHPDVKYLDFSP-- 81 (561)
T ss_pred hhheeecCcchheehhhcc------ceEEccccchh--heeee-----------------------ecCCceecccCc--
Confidence 4678999999999865432 35555543332 22211 123567788888
Q ss_pred CCceEEEEe----------------CCCcEEEEeCCCCccceecCCCCCCC--cc-CceeCCCCCEEEEEECCcEEEEec
Q 004067 137 SKKKIIMVP----------------LPDGIYFQDLSCSKPELKLSSSSCSP--VI-DPHLSSDGTMIAFVRDCELHVLNL 197 (776)
Q Consensus 137 ~dg~~l~~~----------------~~~~l~~~d~~~~~~~~~l~~~~~~~--~~-~~~~SpDg~~la~~~~~~l~~~~l 197 (776)
.+++|..- ..+++++||..+|... .--.....+ .. ...||-|.+++|.+..+.|+++.+
T Consensus 82 -~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv-~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~ 159 (561)
T COG5354 82 -NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV-FSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI 159 (561)
T ss_pred -ccceeeeeccCCccChhhccCCccccCceeEEeccCceeE-eeccccCCcccccceeeeeecchhhhhhccCeEEEEec
Confidence 99988753 2346999999999876 222221111 22 478999999999999999999998
Q ss_pred CCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCC--CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 198 LINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD--SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 198 ~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
|+...+.....-. ..| +..+.|||- +..|+|..-....
T Consensus 160 -t~n~~~~p~~~lr---~~g------------i~dFsisP~~n~~~la~~tPEk~~------------------------ 199 (561)
T COG5354 160 -TDNIEEHPFKNLR---PVG------------ILDFSISPEGNHDELAYWTPEKLN------------------------ 199 (561)
T ss_pred -CCccccCchhhcc---ccc------------eeeEEecCCCCCceEEEEccccCC------------------------
Confidence 6554433221100 111 447889996 4567776532221
Q ss_pred CCCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC-------ceEEEEEEECC
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-------TKLKVLKFDIK 347 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-------~~~~l~~~d~~ 347 (776)
....+.+|.+-.+... +-++ +. ..--.+.|-+.|+.+.+...+.- +...||++++.
T Consensus 200 -------kpa~~~i~sIp~~s~l~tk~l-------fk--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 200 -------KPAMVRILSIPKNSVLVTKNL-------FK--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred -------CCcEEEEEEccCCCeeeeeee-------Ee--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 1133455555433321 1111 11 12235889999995544322221 13579999987
Q ss_pred CCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcE
Q 004067 348 TGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQ 427 (776)
Q Consensus 348 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~ 427 (776)
...++....-.++.. +-.|.| .+++|..++.- ....+-..++.|. .+..-.... .+-..|||.+++
T Consensus 264 e~~i~V~~~~~~pVh---df~W~p-------~S~~F~vi~g~-~pa~~s~~~lr~N-l~~~~Pe~~--rNT~~fsp~~r~ 329 (561)
T COG5354 264 ERSIPVEKDLKDPVH---DFTWEP-------LSSRFAVISGY-MPASVSVFDLRGN-LRFYFPEQK--RNTIFFSPHERY 329 (561)
T ss_pred ccccceeccccccce---eeeecc-------cCCceeEEecc-cccceeecccccc-eEEecCCcc--cccccccCcccE
Confidence 555544322122211 111212 34556555411 1235556666665 332222211 122348999999
Q ss_pred EEEEEccCCCceeeEEEEEeCCCCCCccccceee--cCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 428 VYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL--TNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 428 i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l--~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
|++..-+.....+.+|... | ....+ +...+..-..|||||+.+.....+
T Consensus 330 il~agF~nl~gni~i~~~~----~-----rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPA----G-----RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred EEEecCCccccceEEeccC----C-----ceEEEEEeecCCceEeeccCCceEEEecCCC
Confidence 9998766544445555443 2 23333 222233345899999877665544
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.3e-05 Score=70.49 Aligned_cols=275 Identities=12% Similarity=0.080 Sum_probs=153.6
Q ss_pred CeeeEEEeecCCC-ceEEEEe-CCCcEEEEeCCCCccc-e--ecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCC
Q 004067 126 GVTRYEWVKTSSK-KKIIMVP-LPDGIYFQDLSCSKPE-L--KLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLI 199 (776)
Q Consensus 126 ~~~~~~~sp~~~d-g~~l~~~-~~~~l~~~d~~~~~~~-~--~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~ 199 (776)
.+-.+.|+| - |..||.. .+..|.+|+..++... . .|..+....++..+|||.|++||..+-. -+-++.-.+
T Consensus 16 r~W~~awhp---~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 16 RVWSVAWHP---GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred cEEEEEecc---CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 467889999 5 5555554 6677999998854322 1 2333333348899999999999887743 455555556
Q ss_pred CceeEEee-CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 200 NEQRQLTH-GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 200 g~~~~lt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
++..-+.. .+.. .| +..++||++|+.||.-+.++
T Consensus 93 ~efecv~~lEGHE-------------nE---VK~Vaws~sG~~LATCSRDK----------------------------- 127 (312)
T KOG0645|consen 93 GEFECVATLEGHE-------------NE---VKCVAWSASGNYLATCSRDK----------------------------- 127 (312)
T ss_pred CceeEEeeeeccc-------------cc---eeEEEEcCCCCEEEEeeCCC-----------------------------
Confidence 65544432 1111 00 44788999999999887653
Q ss_pred CCCCCeEEEEEEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-CCce---EE
Q 004067 279 GASNVKVRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQR---KV 353 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~g~~---~~ 353 (776)
.+++|..+.+. ...+.. +.++...+-.+.|.|--..|+..+ -+..|..|.-. .+.. +.
T Consensus 128 -------SVWiWe~deddEfec~aV------L~~HtqDVK~V~WHPt~dlL~S~S----YDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 128 -------SVWIWEIDEDDEFECIAV------LQEHTQDVKHVIWHPTEDLLFSCS----YDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred -------eEEEEEecCCCcEEEEee------eccccccccEEEEcCCcceeEEec----cCCeEEEEeecCCCCeeEEEE
Confidence 46788776443 333332 144555677799999776777665 34456666655 4433 34
Q ss_pred EEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEE--EeCCCceeeccccCCeEEEEEEeecCCCcEEEEE
Q 004067 354 ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYL--HDINGTCLGPITEGDWMVEQIVGVNEASGQVYFT 431 (776)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~--~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~ 431 (776)
|..+....|... |.+. +.-+...+.++.-.||+ .++.+--. ..+..++ |. +| ++.+
T Consensus 191 l~g~~~TVW~~~---F~~~--------G~rl~s~sdD~tv~Iw~~~~~~~~~~s-------r~~Y~v~-W~-~~--~IaS 248 (312)
T KOG0645|consen 191 LDGHENTVWSLA---FDNI--------GSRLVSCSDDGTVSIWRLYTDLSGMHS-------RALYDVP-WD-NG--VIAS 248 (312)
T ss_pred ecCccceEEEEE---ecCC--------CceEEEecCCcceEeeeeccCcchhcc-------cceEeee-ec-cc--ceEe
Confidence 444555567543 3331 22345556677556665 22322111 2223333 54 33 4555
Q ss_pred EccCCCceeeEEEEEeCCCCCCccccceeec-----CCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEE
Q 004067 432 GTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-----NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCS 496 (776)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~ 496 (776)
+..++. +.||+-.-..++. ....+. .+..++.+.+.|.++.++...+.+ +.+..+.
T Consensus 249 ~ggD~~--i~lf~~s~~~d~p----~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD---G~v~~W~ 309 (312)
T KOG0645|consen 249 GGGDDA--IRLFKESDSPDEP----SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD---GIVNFWE 309 (312)
T ss_pred ccCCCE--EEEEEecCCCCCc----hHHHHHhhhcccccccceEEEcCCCCCceeecCCC---ceEEEEE
Confidence 544443 5666555211111 112222 112467889999766666655443 3455443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.7e-05 Score=78.14 Aligned_cols=312 Identities=11% Similarity=0.052 Sum_probs=148.7
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCceecCCccccee
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~ 224 (776)
.++.|.++|.++.+....+..+.. ......+||||+++..... +.|.++|+.+++...-...+..
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~------------- 79 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN------------- 79 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-------------
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-------------
Confidence 457899999999886645544322 2345789999998666553 5799999999875433333321
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEE-EEcc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQ 303 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~ 303 (776)
..++++||||++|+...... ..+.++|.++.+... +...
T Consensus 80 -----~~~i~~s~DG~~~~v~n~~~-----------------------------------~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 80 -----PRGIAVSPDGKYVYVANYEP-----------------------------------GTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp -----EEEEEE--TTTEEEEEEEET-----------------------------------TEEEEEETTT--EEEEEE--
T ss_pred -----cceEEEcCCCCEEEEEecCC-----------------------------------CceeEeccccccceeecccc
Confidence 34788999999887665432 347889988877543 4331
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCC-e
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG-G 382 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 382 (776)
. .+. ......+..+.-||+...+++... +..+|+++|........+..-....+.. +. .++++ +
T Consensus 120 ~-~~~-~~~~~Rv~aIv~s~~~~~fVv~lk---d~~~I~vVdy~d~~~~~~~~i~~g~~~~-D~---------~~dpdgr 184 (369)
T PF02239_consen 120 G-MPV-DGPESRVAAIVASPGRPEFVVNLK---DTGEIWVVDYSDPKNLKVTTIKVGRFPH-DG---------GFDPDGR 184 (369)
T ss_dssp E-E-T-TTS---EEEEEE-SSSSEEEEEET---TTTEEEEEETTTSSCEEEEEEE--TTEE-EE---------EE-TTSS
T ss_pred c-ccc-cccCCCceeEEecCCCCEEEEEEc---cCCeEEEEEeccccccceeeeccccccc-cc---------ccCcccc
Confidence 0 000 012234556677888875444432 2346899998765433322222111111 11 22233 3
Q ss_pred EEEEeccCCceEEEEEeCCCceeecccc-CC--e--EEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCC---CCc
Q 004067 383 FIWASEKTGFRHLYLHDINGTCLGPITE-GD--W--MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW---NHT 454 (776)
Q Consensus 383 ~~~~s~~~g~~~l~~~~~~g~~~~~lt~-~~--~--~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g---~~~ 454 (776)
+++.+ ..+...|.++|..+++...+.. +. . ....+ -.+....++.+...... ..-+..-+. .. ...
T Consensus 185 y~~va-~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~--php~~g~vw~~~~~~~~-~~~~ig~~~--v~v~d~~~ 258 (369)
T PF02239_consen 185 YFLVA-ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF--PHPGFGPVWATSGLGYF-AIPLIGTDP--VSVHDDYA 258 (369)
T ss_dssp EEEEE-EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE--EETTTEEEEEEEBSSSS-EEEEEE--T--TT-STTTB
T ss_pred eeeec-ccccceeEEEeeccceEEEEeeccccccccccccc--cCCCcceEEeeccccce-ecccccCCc--cccchhhc
Confidence 33332 2223388899988776554322 11 1 12222 24444444444332110 011111111 00 000
Q ss_pred cccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCC
Q 004067 455 LEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDG 534 (776)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg 534 (776)
-..++++...++...+..+||++++............|.++|..+-+.+..+..... ...-.++|. .||
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~----------~~~~h~ef~-~dG 327 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG----------KRVVHMEFN-PDG 327 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------------EEEEEE--TTS
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC----------CcEeccEEC-CCC
Confidence 013445554443467788999998888733333357899999877754444432110 013344554 478
Q ss_pred cEEEEEEEc
Q 004067 535 TVLYGALYK 543 (776)
Q Consensus 535 ~~l~~~~~~ 543 (776)
..+...++.
T Consensus 328 ~~v~vS~~~ 336 (369)
T PF02239_consen 328 KEVWVSVWD 336 (369)
T ss_dssp SEEEEEEE-
T ss_pred CEEEEEEec
Confidence 777777775
|
... |
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.3e-08 Score=98.77 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=86.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC-cEEEEECCCCC--CCCchhhhhhhhhc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-ILVWKLDNRGT--ARRGLKFEASIKHN 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v~~~d~rg~--g~~~~~~~~~~~~~ 613 (776)
|...+|.|+.. ..+.||||++|||..... ....+.++ ...|+++| ++|+++|||-. |.-.-.........
T Consensus 80 L~LNIwaP~~~---a~~~PVmV~IHGG~y~~G--s~s~~~yd--gs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~ 152 (491)
T COG2272 80 LYLNIWAPEVP---AEKLPVMVYIHGGGYIMG--SGSEPLYD--GSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAF 152 (491)
T ss_pred eeEEeeccCCC---CCCCcEEEEEeccccccC--CCcccccC--hHHHHhcCCEEEEEeCcccccceeeehhhccccccc
Confidence 88899999832 157899999999753321 11111122 46788887 99999999942 11111001100111
Q ss_pred cCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCC
Q 004067 614 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 674 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~ 674 (776)
....-+.|++.+++|+.++ ..-|+++|.|+|+|.|++.++.+++. ...+|+.+|+.+|...
T Consensus 153 ~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 153 ASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 1123488999999999886 44599999999999999999988875 2236777777776553
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=72.88 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=48.7
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
|.+|.+..|.|++. ++++|+++||..+... .+..+++.|+++||.|+++|+||+|.|.
T Consensus 1 G~~L~~~~w~p~~~-----~k~~v~i~HG~~eh~~-------ry~~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPENP-----PKAVVVIVHGFGEHSG-------RYAHLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred CcEEEEEEecCCCC-----CCEEEEEeCCcHHHHH-------HHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence 56799999999872 5689999999765543 4566799999999999999999999986
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.7e-06 Score=80.75 Aligned_cols=196 Identities=16% Similarity=0.155 Sum_probs=121.8
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe-ecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV-KTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s-p~~ 136 (776)
..|.|.++.+.|+|+.-.. ..|+++++++++.+.+.. .+.....+. +
T Consensus 3 Egp~~d~~~g~l~~~D~~~----~~i~~~~~~~~~~~~~~~--------------------------~~~~G~~~~~~-- 50 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPG----GRIYRVDPDTGEVEVIDL--------------------------PGPNGMAFDRP-- 50 (246)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEEETTTTEEEEEES--------------------------SSEEEEEEECT--
T ss_pred cceEEECCCCEEEEEEcCC----CEEEEEECCCCeEEEEec--------------------------CCCceEEEEcc--
Confidence 5789999888899987654 479999999998766553 234556677 5
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCC-----CCCCccCceeCCCCCEEEEEEC----------CcEEEEecCCCc
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSS-----SCSPVIDPHLSSDGTMIAFVRD----------CELHVLNLLINE 201 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~-----~~~~~~~~~~SpDg~~la~~~~----------~~l~~~~l~~g~ 201 (776)
| ..|++.....+.++|+.+++.+ .+... .........+.|||+ |.+... +.||.++.+ ++
T Consensus 51 -~-g~l~v~~~~~~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~ 125 (246)
T PF08450_consen 51 -D-GRLYVADSGGIAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK 125 (246)
T ss_dssp -T-SEEEEEETTCEEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE
T ss_pred -C-CEEEEEEcCceEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce
Confidence 6 4566666677777799998877 43332 222355689999998 555543 248999988 77
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.+.+...-. ..++++|||||+.|++.....
T Consensus 126 ~~~~~~~~~------------------~pNGi~~s~dg~~lyv~ds~~-------------------------------- 155 (246)
T PF08450_consen 126 VTVVADGLG------------------FPNGIAFSPDGKTLYVADSFN-------------------------------- 155 (246)
T ss_dssp EEEEEEEES------------------SEEEEEEETTSSEEEEEETTT--------------------------------
T ss_pred EEEEecCcc------------------cccceEECCcchheeeccccc--------------------------------
Confidence 666543321 134788999999887654221
Q ss_pred CCeEEEEEEEcC--CCceE---E-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 282 NVKVRLGVVSAA--GGPVS---W-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 282 ~~~~~l~~~d~~--~~~~~---~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|+.++++ +++.. . ... ....+....+++..+|++++ +.. ....|+++|+++.....+
T Consensus 156 ---~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~g~pDG~~vD~~G~l~v-a~~---~~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 156 ---GRIWRFDLDADGGELSNRRVFIDF-------PGGPGYPDGLAVDSDGNLWV-ADW---GGGRIVVFDPDGKLLREI 220 (246)
T ss_dssp ---TEEEEEEEETTTCCEEEEEEEEE--------SSSSCEEEEEEEBTTS-EEE-EEE---TTTEEEEEETTSCEEEEE
T ss_pred ---ceeEEEeccccccceeeeeeEEEc-------CCCCcCCCcceEcCCCCEEE-EEc---CCCEEEEECCCccEEEEE
Confidence 235666654 33221 1 121 22224567789999997433 322 334699999984334444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.9e-06 Score=77.86 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=124.8
Q ss_pred cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCC
Q 004067 230 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 309 (776)
Q Consensus 230 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 309 (776)
+....|+|||..++....| .+|++|+..+-......+
T Consensus 50 I~~~~F~P~gs~~aSgG~D------------------------------------r~I~LWnv~gdceN~~~l------- 86 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSD------------------------------------RAIVLWNVYGDCENFWVL------- 86 (338)
T ss_pred EEEEEECCCCCeEeecCCc------------------------------------ceEEEEeccccccceeee-------
Confidence 3467899999988865543 468899876654333322
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 389 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (776)
..+.+.+..+.|.+||..|+... .+.+++.||+++|+...-...... ++.. ..|... +-.++-+.+.
T Consensus 87 kgHsgAVM~l~~~~d~s~i~S~g----tDk~v~~wD~~tG~~~rk~k~h~~-~vNs---~~p~rr-----g~~lv~Sgsd 153 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDGSHILSCG----TDKTVRGWDAETGKRIRKHKGHTS-FVNS---LDPSRR-----GPQLVCSGSD 153 (338)
T ss_pred ccccceeEeeeeccCCCEEEEec----CCceEEEEecccceeeehhccccc-eeee---cCcccc-----CCeEEEecCC
Confidence 57888999999999999888776 567899999999986554433222 2211 112111 1123333345
Q ss_pred CCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeE
Q 004067 390 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKH 468 (776)
Q Consensus 390 ~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~ 468 (776)
++ ++.+||...+...++-.....+..+. |..++..++-. .-++ .+++|.+.- +. -.-.+..+. .+.
T Consensus 154 D~--t~kl~D~R~k~~~~t~~~kyqltAv~-f~d~s~qv~sg-gIdn--~ikvWd~r~---~d----~~~~lsGh~DtIt 220 (338)
T KOG0265|consen 154 DG--TLKLWDIRKKEAIKTFENKYQLTAVG-FKDTSDQVISG-GIDN--DIKVWDLRK---ND----GLYTLSGHADTIT 220 (338)
T ss_pred Cc--eEEEEeecccchhhccccceeEEEEE-ecccccceeec-cccC--ceeeecccc---Cc----ceEEeecccCcee
Confidence 66 89999988776666555556666654 88888765444 3333 378888853 11 233444443 366
Q ss_pred EEEEcCCcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 469 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 469 ~~~~spdg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
.+++||+|.++.-.+-. ..+.++|..
T Consensus 221 ~lsls~~gs~llsnsMd----~tvrvwd~r 246 (338)
T KOG0265|consen 221 GLSLSRYGSFLLSNSMD----NTVRVWDVR 246 (338)
T ss_pred eEEeccCCCcccccccc----ceEEEEEec
Confidence 78999999988766443 247777653
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.5e-06 Score=77.41 Aligned_cols=296 Identities=11% Similarity=0.123 Sum_probs=168.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCC----CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT----CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+..+|||||+.+| .|.....|.++|.+- .+++.+..... ++--+--+-+ -.+...+..+.|.
T Consensus 116 R~aafs~DG~lvA-----TGsaD~SIKildvermlaks~~~em~~~~~-----qa~hPvIRTl----YDH~devn~l~FH 181 (430)
T KOG0640|consen 116 RAAAFSPDGSLVA-----TGSADASIKILDVERMLAKSKPKEMISGDT-----QARHPVIRTL----YDHVDEVNDLDFH 181 (430)
T ss_pred eeeeeCCCCcEEE-----ccCCcceEEEeehhhhhhhcchhhhccCCc-----ccCCceEeeh----hhccCcccceeec
Confidence 4678999999999 444456799998761 11111111000 0000000000 0123467888999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCccce---ecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeC
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKPEL---KLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~~~---~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~ 208 (776)
| ....|+.. .++.|.+.|.+....++ .++.. ..+..+.|.|.|..|+...+. -+.++|+.|-+.-. ..+
T Consensus 182 P---re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~--~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv-san 255 (430)
T KOG0640|consen 182 P---RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT--EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV-SAN 255 (430)
T ss_pred c---hhheEEeccCCCeEEEEecccHHHHHHHHHhhcc--ceeeeEeecCCCceEEEecCCCceeEEeccceeEee-ecC
Confidence 9 77666655 77889999987654442 23322 247889999999999888775 47888887665432 222
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
+.. +.-+.+..+.+|+.|+.-+..+.| ..|.
T Consensus 256 Pd~-------------qht~ai~~V~Ys~t~~lYvTaSkD------------------------------------G~Ik 286 (430)
T KOG0640|consen 256 PDD-------------QHTGAITQVRYSSTGSLYVTASKD------------------------------------GAIK 286 (430)
T ss_pred ccc-------------ccccceeEEEecCCccEEEEeccC------------------------------------CcEE
Confidence 321 111224577899999854444432 3478
Q ss_pred EEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC-ceee--
Q 004067 289 VVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVN-- 364 (776)
Q Consensus 289 ~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~-- 364 (776)
+||--+++... +.- ..+...+-...|+.|||+|+... .+..+++|.+.+|..-.....-+. +-..
T Consensus 287 lwDGVS~rCv~t~~~-------AH~gsevcSa~Ftkn~kyiLsSG----~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~r 355 (430)
T KOG0640|consen 287 LWDGVSNRCVRTIGN-------AHGGSEVCSAVFTKNGKYILSSG----KDSTVKLWEISTGRMLKEYTGAGTTGRQKHR 355 (430)
T ss_pred eeccccHHHHHHHHh-------hcCCceeeeEEEccCCeEEeecC----CcceeeeeeecCCceEEEEecCCcccchhhh
Confidence 88877766432 211 12344677899999999776543 567799999988876444332211 0000
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecc-ccC-CeEEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI-TEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~l-t~~-~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
.+..|.. ..+.++|.-+..+ .++-||..+.....+ ..+ ...++- ..-||.+- .+++-+.+ .+...
T Consensus 356 tqAvFNh-------tEdyVl~pDEas~--slcsWdaRtadr~~l~slgHn~a~R~-i~HSP~~p-~FmTcsdD--~raRF 422 (430)
T KOG0640|consen 356 TQAVFNH-------TEDYVLFPDEASN--SLCSWDARTADRVALLSLGHNGAVRW-IVHSPVEP-AFMTCSDD--FRARF 422 (430)
T ss_pred hhhhhcC-------ccceEEccccccC--ceeeccccchhhhhhcccCCCCCceE-EEeCCCCC-ceeeeccc--ceeee
Confidence 0122221 2234666666666 899999877654443 333 233333 33577665 33333333 23455
Q ss_pred EEEE
Q 004067 443 YCAK 446 (776)
Q Consensus 443 ~~~~ 446 (776)
|.-.
T Consensus 423 Wyrr 426 (430)
T KOG0640|consen 423 WYRR 426 (430)
T ss_pred eeec
Confidence 5443
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=80.24 Aligned_cols=185 Identities=15% Similarity=0.089 Sum_probs=109.3
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC------CCCch---------------hhhhhhh
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT------ARRGL---------------KFEASIK 611 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~------g~~~~---------------~~~~~~~ 611 (776)
+.+-||++||.-.+.. .|......+...+.+. +-.+.+|-+-. ....+ .|...-.
T Consensus 4 ~k~rvLcLHGfrQsg~---~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~ 79 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGK---VFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNE 79 (230)
T ss_pred CCceEEEecchhhccH---HHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccc
Confidence 4578999999654433 2323333345556555 77777776521 00100 0100000
Q ss_pred -hccCCccHHH-HHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC--C------CceEEEEEcCCCCCccccccc
Q 004067 612 -HNCGRIDAED-QLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--P------DVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 612 -~~~~~~~~~D-~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--~------~~~~~~v~~~~~~~~~~~~~~ 681 (776)
........+. +....+++++++.-| +|+|+|.|+.++.++++.. . ..|+-+|.++|+..+.
T Consensus 80 ~~~~~~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~----- 150 (230)
T KOG2551|consen 80 ASFTEYFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPS----- 150 (230)
T ss_pred cccccccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCc-----
Confidence 0000111233 344455666666557 8999999999999998721 1 1256777777664220
Q ss_pred ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 761 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 761 (776)
. ...-..+...+++|.|.|.|+.|.+++...+..+++.+.. ..++..| +||.+.. .
T Consensus 151 -------------~---~~~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~----a~vl~Hp-ggH~VP~---~ 206 (230)
T KOG2551|consen 151 -------------K---KLDESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKD----ATVLEHP-GGHIVPN---K 206 (230)
T ss_pred -------------c---hhhhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCC----CeEEecC-CCccCCC---c
Confidence 0 0111223457889999999999999999999999998843 3555555 4997633 3
Q ss_pred HHHHHHHHHHHHH
Q 004067 762 IYMEERIWEFIER 774 (776)
Q Consensus 762 ~~~~~~~~~fl~~ 774 (776)
..+.+.+.+||..
T Consensus 207 ~~~~~~i~~fi~~ 219 (230)
T KOG2551|consen 207 AKYKEKIADFIQS 219 (230)
T ss_pred hHHHHHHHHHHHH
Confidence 3566777777764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.8e-05 Score=74.79 Aligned_cols=222 Identities=13% Similarity=0.067 Sum_probs=130.8
Q ss_pred CceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
-.+..+| ++..++|.+... .-++++|..+|+..+....+. + ++ -..--.|||
T Consensus 8 H~~a~~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~~~a~~-----------g---------RH-FyGHg~fs~-- 60 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPG----TFALVFDCRTGQLLQRLWAPP-----------G---------RH-FYGHGVFSP-- 60 (305)
T ss_pred cceeeCCCCCeEEEEEeCCC----cEEEEEEcCCCceeeEEcCCC-----------C---------CE-EecCEEEcC--
Confidence 4677899 666666665543 469999999998865553222 0 00 112347899
Q ss_pred CCceEEEEeCC------CcEEEEeCCCCccc-eecCCCCCCCccCceeCCCCCEEEEEEC-------------------C
Q 004067 137 SKKKIIMVPLP------DGIYFQDLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRD-------------------C 190 (776)
Q Consensus 137 ~dg~~l~~~~~------~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~-------------------~ 190 (776)
||++|+.+.+ +.|-+||...+-.+ ..+..+ +-....+.+.|||+.|+..-. .
T Consensus 61 -dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~-GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p 138 (305)
T PF07433_consen 61 -DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH-GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP 138 (305)
T ss_pred -CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC-CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence 9999998833 45889999844333 122221 112466899999988877642 1
Q ss_pred cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 191 ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 191 ~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
+|-++|..+|+...-..-+.. ...++ ++.+++++||. ++|.....+....
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~---~~~lS----------iRHLa~~~~G~-V~~a~Q~qg~~~~---------------- 188 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPD---LHQLS----------IRHLAVDGDGT-VAFAMQYQGDPGD---------------- 188 (305)
T ss_pred ceEEEecCCCceeeeeecCcc---ccccc----------eeeEEecCCCc-EEEEEecCCCCCc----------------
Confidence 477777788875332111110 00011 56889999987 5665543321110
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
...-|.++...+ ....+..+.. ....-.+|+.++++++||..++.++.|+. .+.+||.++|+
T Consensus 189 ------------~~PLva~~~~g~-~~~~~~~p~~--~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg---~~~~~d~~tg~ 250 (305)
T PF07433_consen 189 ------------APPLVALHRRGG-ALRLLPAPEE--QWRRLNGYIGSIAADRDGRLIAVTSPRGG---RVAVWDAATGR 250 (305)
T ss_pred ------------cCCeEEEEcCCC-cceeccCChH--HHHhhCCceEEEEEeCCCCEEEEECCCCC---EEEEEECCCCC
Confidence 001133333222 2333332211 11234679999999999998888876653 47888999998
Q ss_pred eEEEEE
Q 004067 351 RKVILV 356 (776)
Q Consensus 351 ~~~l~~ 356 (776)
......
T Consensus 251 ~~~~~~ 256 (305)
T PF07433_consen 251 LLGSVP 256 (305)
T ss_pred Eeeccc
Confidence 766543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-05 Score=75.45 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=148.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
...+||+-|.+||---. .+.|.+||..|-...++.+ .+-..+.+..||+
T Consensus 27 ~~~~Fs~~G~~lAvGc~-----nG~vvI~D~~T~~iar~ls-----------------------aH~~pi~sl~WS~--- 75 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA-----NGRVVIYDFDTFRIARMLS-----------------------AHVRPITSLCWSR--- 75 (405)
T ss_pred ceEEeccCcceeeeecc-----CCcEEEEEccccchhhhhh-----------------------ccccceeEEEecC---
Confidence 77899999999994322 3469999999876533321 1225789999999
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCC--EEEEEECCcEEEEecCCCceeEEeeCCCCCce
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT--MIAFVRDCELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~--~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||+.|+.+ .+..|.+||+..|....++-.. . .+....|.|-.+ -+|...+..-++.++..+..+.|..+..++..
T Consensus 76 dgr~LltsS~D~si~lwDl~~gs~l~rirf~-s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln 153 (405)
T KOG1273|consen 76 DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD-S-PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN 153 (405)
T ss_pred CCCEeeeecCCceeEEEeccCCCceeEEEcc-C-ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccc
Confidence 99999976 7788999999888765343332 2 477889998444 44444555677777777666666554433111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.. ...-.|.+-|++|+... ++..|.+++.++
T Consensus 154 ~s-------------as~~~fdr~g~yIitGt------------------------------------sKGkllv~~a~t 184 (405)
T KOG1273|consen 154 SS-------------ASHGVFDRRGKYIITGT------------------------------------SKGKLLVYDAET 184 (405)
T ss_pred cc-------------cccccccCCCCEEEEec------------------------------------CcceEEEEecch
Confidence 00 01123677788776533 224577888877
Q ss_pred CceEEE-EcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-------CCceEEEEEecc----Cce
Q 004067 295 GPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-------TGQRKVILVEEL----DSW 362 (776)
Q Consensus 295 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-------~g~~~~l~~~~~----~~~ 362 (776)
-+...- .. .....+..+.+|-.|+.+++-+ .+..|..|+.. .|+++...+-.+ ..|
T Consensus 185 ~e~vas~ri--------ts~~~IK~I~~s~~g~~liiNt----sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 185 LECVASFRI--------TSVQAIKQIIVSRKGRFLIINT----SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred heeeeeeee--------chheeeeEEEEeccCcEEEEec----CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 654321 00 0123567788999998666543 34456666653 122221111111 123
Q ss_pred eecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCCceeeccccCC
Q 004067 363 VNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
-. . .+++++ +++.+. .-.-.||+|....|....+..+.
T Consensus 253 k~--c---------cfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 253 KK--C---------CFSGDGEYVCAGS-ARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred hh--e---------eecCCccEEEecc-ccceeEEEEecCCcceeeeecCC
Confidence 21 1 222333 333332 33458999998888877776654
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-06 Score=78.32 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=73.8
Q ss_pred CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC-cccccccccccccCCCCCCccchhcCChhhhhcc--CC--Cc
Q 004067 638 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS-WDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHK--MK--GK 712 (776)
Q Consensus 638 ~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~--~P 712 (776)
++++|+|.|+||+.|.+++.++. ++|+++ .|... +..+. .+++.+.+ |....+ .++.. ++ ..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~aVLi-NPAv~P~~~L~-----~~ig~~~~----y~~~~~-~h~~eL~~~~p~r 126 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IRQVIF-NPNLFPEENME-----GKIDRPEE----YADIAT-KCVTNFREKNRDR 126 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CCEEEE-CCCCChHHHHH-----HHhCCCcc----hhhhhH-HHHHHhhhcCccc
Confidence 46999999999999999999875 345444 45433 22221 12222211 111111 11111 22 34
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++++..+.|++.++..+.+.+... ....+.+|++|.|. ..+++...|.+|+.+
T Consensus 127 ~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~---~fe~~l~~I~~F~~~ 179 (180)
T PRK04940 127 CLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFK---NISPHLQRIKAFKTL 179 (180)
T ss_pred EEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCC---CHHHHHHHHHHHHhc
Confidence 699999999999988776666422 25889999999874 477788999999853
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.1e-06 Score=87.38 Aligned_cols=263 Identities=10% Similarity=0.044 Sum_probs=153.1
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCCceeE
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLINEQRQ 204 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g~~~~ 204 (776)
-+.+..|.| ||..|+.+.++.++++|...|....+|..+... +..++||.||++.|..+... +.+|+.+-....+
T Consensus 14 ci~d~afkP---DGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-VycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKP---DGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECC---CCceEEEecCCEEEEEeCCCcccccccccccce-EEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 577889999 999999999999999999877665477766654 88899999999988766543 5566544222222
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
..++.. +.-++|.|=...|+.-+.+
T Consensus 90 YSH~D~-------------------IQCMsFNP~~h~LasCsLs------------------------------------ 114 (1081)
T KOG1538|consen 90 YSHNDA-------------------IQCMSFNPITHQLASCSLS------------------------------------ 114 (1081)
T ss_pred eccCCe-------------------eeEeecCchHHHhhhcchh------------------------------------
Confidence 222111 2234566655555543321
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe----ccC
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE----ELD 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----~~~ 360 (776)
+..+|..+.+.+.+- .....+-..+|..||++++... .+++|-+-+ ++|+.+...+. +.+
T Consensus 115 -dFglWS~~qK~V~K~----------kss~R~~~CsWtnDGqylalG~----~nGTIsiRN-k~gEek~~I~Rpgg~Nsp 178 (1081)
T KOG1538|consen 115 -DFGLWSPEQKSVSKH----------KSSSRIICCSWTNDGQYLALGM----FNGTISIRN-KNGEEKVKIERPGGSNSP 178 (1081)
T ss_pred -hccccChhhhhHHhh----------hhheeEEEeeecCCCcEEEEec----cCceEEeec-CCCCcceEEeCCCCCCCC
Confidence 123444433332211 1223566789999999888776 445555555 45665555443 334
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee---eccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL---GPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~---~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
.|... |+|.... -.+.++.+.+-+. +|-.+.++|..+ +.|..+. .- +++-++|.++++-+...+
T Consensus 179 iwsi~---~~p~sg~---G~~di~aV~DW~q--TLSFy~LsG~~Igk~r~L~FdP---~C-isYf~NGEy~LiGGsdk~- 245 (1081)
T KOG1538|consen 179 IWSIC---WNPSSGE---GRNDILAVADWGQ--TLSFYQLSGKQIGKDRALNFDP---CC-ISYFTNGEYILLGGSDKQ- 245 (1081)
T ss_pred ceEEE---ecCCCCC---CccceEEEEeccc--eeEEEEecceeecccccCCCCc---hh-heeccCCcEEEEccCCCc-
Confidence 55543 3332210 0112555555544 677777777532 2222211 11 124578998777766543
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCC
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSL 486 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~ 486 (776)
.++|-.+ |- .+-.+-..+ -++++.+-|++++++..+...
T Consensus 246 --L~~fTR~----Gv----rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 246 --LSLFTRD----GV----RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred --eEEEeec----Ce----EEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 6776543 21 122222222 367889999999999887653
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-05 Score=75.07 Aligned_cols=251 Identities=13% Similarity=0.108 Sum_probs=145.3
Q ss_pred ccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCC
Q 004067 172 VIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSS 250 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 250 (776)
+....||+-|..||..- ++.+.+||..|-.+-+..... ...+..+.||+||++|+..+.|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-----------------~~pi~sl~WS~dgr~LltsS~D-- 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-----------------VRPITSLCWSRDGRKLLTSSRD-- 86 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-----------------ccceeEEEecCCCCEeeeecCC--
Confidence 56789999999999975 568999999875543322211 1125588999999999987754
Q ss_pred CCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCe--E
Q 004067 251 EIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNI--L 327 (776)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--~ 327 (776)
..+.+||+-.|.. +++.+ ...+....|.|-.+ .
T Consensus 87 ----------------------------------~si~lwDl~~gs~l~rirf----------~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 87 ----------------------------------WSIKLWDLLKGSPLKRIRF----------DSPVWGAQWHPRKRNKC 122 (405)
T ss_pred ----------------------------------ceeEEEeccCCCceeEEEc----------cCccceeeeccccCCeE
Confidence 4578999877763 34433 34567788988543 3
Q ss_pred EEEEEeecCceEEEEEEECCCCceEEEEEeccCc--eeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee
Q 004067 328 TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS--WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 405 (776)
Q Consensus 328 l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~ 405 (776)
++...+.. -++.+...+..+.|..+.+.. .+.....|.+ .+.++++.+.-| .|.+++.++-+.
T Consensus 123 va~~~~~s-----p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr--------~g~yIitGtsKG--kllv~~a~t~e~ 187 (405)
T KOG1273|consen 123 VATIMEES-----PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR--------RGKYIITGTSKG--KLLVYDAETLEC 187 (405)
T ss_pred EEEEecCC-----cEEEEecCCceeeccCCCccccccccccccccC--------CCCEEEEecCcc--eEEEEecchhee
Confidence 43333211 233344444555554433221 1111111211 234666666666 666777766543
Q ss_pred e---ccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE-eCCCCC--Cc--cccceeecCCCCeEEEEEcCCcC
Q 004067 406 G---PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK-LYPDWN--HT--LEAPVKLTNGKGKHVAVLDHNMR 477 (776)
Q Consensus 406 ~---~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~-~~~~g~--~~--~~~~~~l~~~~~~~~~~~spdg~ 477 (776)
. ++|. -..+.+.. ++..|+.+++..+.+- +..|.+. +..-|. +. ..+.+.+-+.......-||.||.
T Consensus 188 vas~rits-~~~IK~I~-~s~~g~~liiNtsDRv---IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 188 VASFRITS-VQAIKQII-VSRKGRFLIINTSDRV---IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred eeeeeech-heeeeEEE-EeccCcEEEEecCCce---EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 2 2332 12234444 8889998888876532 4555554 211111 00 01112222333344578999999
Q ss_pred EEEEEeeCCCCCCEEEEEEcCCCceeEeecc
Q 004067 478 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 508 (776)
Q Consensus 478 ~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 508 (776)
+++-.. .....+|+|....|..++.|..
T Consensus 263 Yv~a~s---~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 263 YVCAGS---ARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred EEEecc---ccceeEEEEecCCcceeeeecC
Confidence 877665 3345799999999998777654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-06 Score=84.68 Aligned_cols=264 Identities=12% Similarity=0.051 Sum_probs=166.1
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~ 202 (776)
.+|..+.|.| +|++|+.. ..+.+-+|+..+-.-+..+..++. .++.+.||++|.+++....+ -|-+|++.-..+
T Consensus 97 c~V~~v~WtP---eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs-~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 97 CPVNVVRWTP---EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDS-PVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred cceeeEEEcC---CCceeEeecccccEEEecCceeeHHHHhhhhcc-cceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 4688999999 99999987 567788888765443313334444 48899999999987766543 356666654444
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+.+-.... .-++.++|||...+.+..+.|
T Consensus 173 k~~~ahh~-----------------eaIRdlafSpnDskF~t~SdD---------------------------------- 201 (464)
T KOG0284|consen 173 KIIQAHHA-----------------EAIRDLAFSPNDSKFLTCSDD---------------------------------- 201 (464)
T ss_pred HHhhHhhh-----------------hhhheeccCCCCceeEEecCC----------------------------------
Confidence 33211110 015678899977666655543
Q ss_pred CeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EEEEeccC
Q 004067 283 VKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELD 360 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~ 360 (776)
..|.+||..-.+. ..| .++...+..+.|.|.-..|+..+ ++.-+.+||+.+|..- .+..+...
T Consensus 202 --g~ikiWdf~~~kee~vL---------~GHgwdVksvdWHP~kgLiasgs----kDnlVKlWDprSg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 202 --GTIKIWDFRMPKEERVL---------RGHGWDVKSVDWHPTKGLIASGS----KDNLVKLWDPRSGSCLATLHGHKNT 266 (464)
T ss_pred --CeEEEEeccCCchhhee---------ccCCCCcceeccCCccceeEEcc----CCceeEeecCCCcchhhhhhhccce
Confidence 3578898875543 444 67788899999999765555544 3447999999998753 23333322
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
.- .-.|.+. +.++.+..++. .+.++|...- +...+-.+...+.... |+|=..-|+.+...++.
T Consensus 267 Vl---~~~f~~n--------~N~Llt~skD~--~~kv~DiR~mkEl~~~r~Hkkdv~~~~-WhP~~~~lftsgg~Dgs-- 330 (464)
T KOG0284|consen 267 VL---AVKFNPN--------GNWLLTGSKDQ--SCKVFDIRTMKELFTYRGHKKDVTSLT-WHPLNESLFTSGGSDGS-- 330 (464)
T ss_pred EE---EEEEcCC--------CCeeEEccCCc--eEEEEehhHhHHHHHhhcchhhheeec-cccccccceeeccCCCc--
Confidence 11 1123332 23555555655 7888887743 3444444555666654 89988888888887775
Q ss_pred eeEEEEEeCCCCCCccccceeecC--CCCeEEEEEcCCcCEEEE
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVD 481 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~--~~~~~~~~~spdg~~l~~ 481 (776)
+..|.+.+.. ++..+.. ...+.++++.|=|-.|+.
T Consensus 331 vvh~~v~~~~-------p~~~i~~AHd~~iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 331 VVHWVVGLEE-------PLGEIPPAHDGEIWSLAYHPLGHILAT 367 (464)
T ss_pred eEEEeccccc-------cccCCCcccccceeeeeccccceeEee
Confidence 6667776411 2222221 124778899999965554
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-07 Score=91.74 Aligned_cols=183 Identities=18% Similarity=0.212 Sum_probs=118.0
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
-++..+.+.||.++...+..-.....+ ....+||++-|..+..++. ....-++.||.|+..+.+|+++|.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~-ngq~LvIC~EGNAGFYEvG---------~m~tP~~lgYsvLGwNhPGFagST 283 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSG-NGQDLVICFEGNAGFYEVG---------VMNTPAQLGYSVLGWNHPGFAGST 283 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCC-CCceEEEEecCCccceEee---------eecChHHhCceeeccCCCCccccC
Confidence 567788888998887777764322122 3346888888865543321 123346789999999999998774
Q ss_pred -hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc
Q 004067 604 -LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682 (776)
Q Consensus 604 -~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (776)
.++. ..+...+.+++++.+..-....+.|+++|||.||+-++++|..+|+ ++++|+-+.+-|........
T Consensus 284 G~P~p--------~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl~r 354 (517)
T KOG1553|consen 284 GLPYP--------VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLALFR 354 (517)
T ss_pred CCCCc--------ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHhhh
Confidence 3222 2334556677788887655577899999999999999999999999 48999887776643221110
Q ss_pred ccccc-CCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccC
Q 004067 683 TEKYM-GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVH 725 (776)
Q Consensus 683 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~ 725 (776)
...++ +.-......+...+....+.+.+.|+++|.-.+|+++.
T Consensus 355 MP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 355 MPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred chHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 00000 00000001112223345567778899999988887764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00045 Score=73.08 Aligned_cols=205 Identities=14% Similarity=0.122 Sum_probs=132.5
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.++++|.+.+.||-.+. + ++|-+|++..+-- ..+...++ ..+.+..|++
T Consensus 29 ~slA~s~kS~~lAvsRt-~----g~IEiwN~~~~w~~~~vi~g~~d-----------------------rsIE~L~W~e- 79 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRT-D----GNIEIWNLSNNWFLEPVIHGPED-----------------------RSIESLAWAE- 79 (691)
T ss_pred EEEEEeccCCceeeecc-C----CcEEEEccCCCceeeEEEecCCC-----------------------CceeeEEEcc-
Confidence 68899999999985544 2 4689999887542 33333222 4678899997
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 136 SSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
.|+.+-...++.|--||+.+++.+..+....+ .+..++.+|-++.++...+ +-|+.++...+.++--..-..
T Consensus 80 --~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r---- 152 (691)
T KOG2048|consen 80 --GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR---- 152 (691)
T ss_pred --CCeEEeecCCceEEEEecccCceeEEecCCCc-ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc----
Confidence 66655566889999999999988744444333 4788888999988888754 456666665554432211111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+.+|+..++|+|+|.+|+-.+.| ..|.+||..+
T Consensus 153 -----------q~sRvLslsw~~~~~~i~~Gs~D------------------------------------g~Iriwd~~~ 185 (691)
T KOG2048|consen 153 -----------QKSRVLSLSWNPTGTKIAGGSID------------------------------------GVIRIWDVKS 185 (691)
T ss_pred -----------ccceEEEEEecCCccEEEecccC------------------------------------ceEEEEEcCC
Confidence 12346689999999999876643 4578899888
Q ss_pred CceEEEEcccCCCCCCC-CcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 295 GPVSWMDLQCGGTDQNY-DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
+....+-.-.-+ ++.. ....+..+.+-.|+. |+... ..+.+-.||...|..
T Consensus 186 ~~t~~~~~~~~d-~l~k~~~~iVWSv~~Lrd~t-I~sgD----S~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 186 GQTLHIITMQLD-RLSKREPTIVWSVLFLRDST-IASGD----SAGTVTFWDSIFGTL 237 (691)
T ss_pred CceEEEeeeccc-ccccCCceEEEEEEEeecCc-EEEec----CCceEEEEcccCcch
Confidence 765442110000 1122 344567777777774 44332 234577888877754
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-07 Score=101.15 Aligned_cols=100 Identities=17% Similarity=0.088 Sum_probs=68.5
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh---------hh-hhhc---------
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE---------AS-IKHN--------- 613 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~---------~~-~~~~--------- 613 (776)
..|+|+++||..+... .|..++..|+++||.|+++|+||||.+..... .. .+.+
T Consensus 448 g~P~VVllHG~~g~~~-------~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRD 520 (792)
T TIGR03502 448 GWPVVIYQHGITGAKE-------NALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARD 520 (792)
T ss_pred CCcEEEEeCCCCCCHH-------HHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceecccccccccc
Confidence 4689999999766543 34556888999999999999999998843200 00 0000
Q ss_pred cCCccHHHHHHHHHHHH------Hc----CCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 614 CGRIDAEDQLTGAEWLI------KQ----GLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~------~~----~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
--...+.|+......+. +. ...+..++.++||||||.+++.++...
T Consensus 521 n~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 521 NLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 01223566766666665 11 124567999999999999999999853
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=87.72 Aligned_cols=181 Identities=10% Similarity=0.038 Sum_probs=123.9
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
++..++|||+.|.. |....+|-+||++...++.-.. ++ ..+....+...||
T Consensus 469 RSckL~pdgrtLiv-----GGeastlsiWDLAapTprikae----------lt-----------ssapaCyALa~sp--- 519 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIV-----GGEASTLSIWDLAAPTPRIKAE----------LT-----------SSAPACYALAISP--- 519 (705)
T ss_pred eeeEecCCCceEEe-----ccccceeeeeeccCCCcchhhh----------cC-----------CcchhhhhhhcCC---
Confidence 88999999999974 2234689999998776532111 00 1123566778899
Q ss_pred CceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCce
Q 004067 138 KKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 138 dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
|.+ ++|. .+++|-+||+.....++++.....+ +..+.+|+||.+|---. ++.+.-||+.+|...+-......
T Consensus 520 Dak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDG-ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ--- 594 (705)
T KOG0639|consen 520 DAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ--- 594 (705)
T ss_pred ccc-eeeeeccCCcEEEEEcccceeeecccCCCCC-ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhh---
Confidence 887 5554 8899999999998877677666554 88999999999976544 45688999987754322111110
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+.++.+.|.|.+|+..-.+ ..+.|....+
T Consensus 595 ---------------IfSLg~cP~~dWlavGMen------------------------------------s~vevlh~sk 623 (705)
T KOG0639|consen 595 ---------------IFSLGYCPTGDWLAVGMEN------------------------------------SNVEVLHTSK 623 (705)
T ss_pred ---------------heecccCCCccceeeeccc------------------------------------CcEEEEecCC
Confidence 4456689999999976532 2245555555
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
.+...+ ..++.-+-.+.|++-||+++.+.
T Consensus 624 p~kyql---------hlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 624 PEKYQL---------HLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ccceee---------cccccEEEEEEecccCceeeecC
Confidence 555555 34566788899999999877553
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-05 Score=75.84 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=69.2
Q ss_pred CCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCC--
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLIN-- 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g-- 200 (776)
..+.++.|.+ ||..++-+ .+..|.+||.+++..+ +|.....+......|||||..|.-.+-..+|.+--++.
T Consensus 196 ~pVtsmqwn~---dgt~l~tAS~gsssi~iWdpdtg~~~-pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w 271 (445)
T KOG2139|consen 196 NPVTSMQWNE---DGTILVTASFGSSSIMIWDPDTGQKI-PLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW 271 (445)
T ss_pred ceeeEEEEcC---CCCEEeecccCcceEEEEcCCCCCcc-cccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc
Confidence 4578999999 99999987 4567999999999998 77633333477899999999876665444433321111
Q ss_pred -ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEec
Q 004067 201 -EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVD 248 (776)
Q Consensus 201 -~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 248 (776)
..+.+...+ ++....|||+|+.|+|....
T Consensus 272 t~erw~lgsg-------------------rvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 272 TKERWILGSG-------------------RVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred eecceeccCC-------------------ceeeeeecCCCCEEEEEEcC
Confidence 111221111 24456799999999998753
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.3e-06 Score=75.73 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=112.2
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
++|++-|-++ |..--..++..|+++|+.|+.+|-+-+-.+.+ -......|+.+.+++..++.
T Consensus 4 ~~v~~SGDgG-------w~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~r---------tP~~~a~Dl~~~i~~y~~~w-- 65 (192)
T PF06057_consen 4 LAVFFSGDGG-------WRDLDKQIAEALAKQGVPVVGVDSLRYFWSER---------TPEQTAADLARIIRHYRARW-- 65 (192)
T ss_pred EEEEEeCCCC-------chhhhHHHHHHHHHCCCeEEEechHHHHhhhC---------CHHHHHHHHHHHHHHHHHHh--
Confidence 5677777433 32222345889999999999999652222111 11233778999999888875
Q ss_pred CCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCC-
Q 004067 636 KVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK- 710 (776)
Q Consensus 636 d~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 710 (776)
...++.|+|+|+|+-+.-.+..+-|. .++.+++++|..... +..... .+++...... ...+...+.++.
T Consensus 66 ~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~d-Feihv~-~wlg~~~~~~----~~~~~pei~~l~~ 139 (192)
T PF06057_consen 66 GRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTAD-FEIHVS-GWLGMGGDDA----AYPVIPEIAKLPP 139 (192)
T ss_pred CCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcce-EEEEhh-hhcCCCCCcc----cCCchHHHHhCCC
Confidence 45699999999999888888776654 567777777654321 111111 1122222111 123455566776
Q ss_pred CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 711 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.|+++|+|.++.-.... .+. ...++.+..|| ||.| .++...+.+.|++-+++
T Consensus 140 ~~v~CiyG~~E~d~~cp-------~l~--~~~~~~i~lpG-gHHf--d~dy~~La~~Il~~l~~ 191 (192)
T PF06057_consen 140 APVQCIYGEDEDDSLCP-------SLR--QPGVEVIALPG-GHHF--DGDYDALAKRILDALKA 191 (192)
T ss_pred CeEEEEEcCCCCCCcCc-------ccc--CCCcEEEEcCC-CcCC--CCCHHHHHHHHHHHHhc
Confidence 49999999887542211 121 35678999998 5655 34566666777666543
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-06 Score=77.06 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=129.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+..++||-|.++|.. |....-|.++|++..+. ..+ +.+..+|...-|--
T Consensus 103 vk~~af~~ds~~llt-----gg~ekllrvfdln~p~App~E~------------------------~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLT-----GGQEKLLRVFDLNRPKAPPKEI------------------------SGHTGGIRTVLWCH 153 (334)
T ss_pred eeeEEecccchhhhc-----cchHHHhhhhhccCCCCCchhh------------------------cCCCCcceeEEEec
Confidence 578899999999873 32223455556554332 111 12346788888876
Q ss_pred cCCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCc
Q 004067 135 TSSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 135 ~~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
..+.|+. +.++++.+||..++..+..|.... .+.....|+||+.|...-..-|-.|+.++=.... +-.
T Consensus 154 ---eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK--s~k---- 222 (334)
T KOG0278|consen 154 ---EDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK--SYK---- 222 (334)
T ss_pred ---cCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEecCceeEEecccccccee--ecc----
Confidence 5566665 578899999999998884554332 3788999999998877766778888876533211 111
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
..+. +.+.+.+|+...++... ....+|.||..
T Consensus 223 ~P~n------------V~SASL~P~k~~fVaGg------------------------------------ed~~~~kfDy~ 254 (334)
T KOG0278|consen 223 MPCN------------VESASLHPKKEFFVAGG------------------------------------EDFKVYKFDYN 254 (334)
T ss_pred Cccc------------cccccccCCCceEEecC------------------------------------cceEEEEEecc
Confidence 1111 44667889874333211 11567899999
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
+|+....-. .++.+.+-.++|||||...+..+ .++.|.+|...-++..
T Consensus 255 TgeEi~~~n-------kgh~gpVhcVrFSPdGE~yAsGS----EDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 255 TGEEIGSYN-------KGHFGPVHCVRFSPDGELYASGS----EDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeecc-------cCCCCceEEEEECCCCceeeccC----CCceEEEEEecCCCch
Confidence 988765522 46677889999999998766555 5677888887665543
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00025 Score=80.28 Aligned_cols=310 Identities=17% Similarity=0.165 Sum_probs=166.2
Q ss_pred cChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCC-C---CcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHH
Q 004067 41 FSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSP-D---HSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLR 116 (776)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~-~---~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~ 116 (776)
+..+++...... ..+..+|+|..++|+... + ......+|+.+... .+.++.
T Consensus 4 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~------------------ 58 (620)
T COG1506 4 FDAEDLLALARV-----SDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTF------------------ 58 (620)
T ss_pred CCHHHHHhhhcc-----cCcccCCCCceeEEeeccccccccccccceEEEeccc--cccccc------------------
Confidence 445666655555 888999999999999874 1 12345788876554 222221
Q ss_pred HHHHHHhcCCeeeEEEeecCCCceEEEEeC-----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--
Q 004067 117 RERLRERGLGVTRYEWVKTSSKKKIIMVPL-----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-- 189 (776)
Q Consensus 117 ~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~-----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-- 189 (776)
..++..+.|+| ||+.+++.. ..++|+++.. + .. ..+. ..+..+.|+|+|+.+++...
T Consensus 59 -------~~~~~~~~~sp---dg~~~~~~~~~~~~~~~l~l~~~~-g-~~-~~~~---~~v~~~~~~~~g~~~~~~~~~~ 122 (620)
T COG1506 59 -------GGGVSELRWSP---DGSVLAFVSTDGGRVAQLYLVDVG-G-LI-TKTA---FGVSDARWSPDGDRIAFLTAEG 122 (620)
T ss_pred -------CCcccccccCC---CCCEEEEEeccCCCcceEEEEecC-C-ce-eeee---cccccceeCCCCCeEEEEeccc
Confidence 24677889999 999999985 3568888887 4 22 2221 13678999999999999431
Q ss_pred -----Cc-------EEEE-ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEE
Q 004067 190 -----CE-------LHVL-NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFR 256 (776)
Q Consensus 190 -----~~-------l~~~-~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 256 (776)
+. +.++ +..+++...+..-..... .. ........+..+.+.+|++.++.........+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 193 (620)
T COG1506 123 ASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESK----LI--KLGLGNLDVVSFATDGDGRLVASIRLDDDADP--- 193 (620)
T ss_pred ccccCCceeeeecccceeecCCCCcccceEEEccCcc----cc--cccCCCCceeeeeeCCCCceeEEeeeccccCC---
Confidence 11 1122 222212222211110000 00 00000111334455566666665554332111
Q ss_pred EeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC
Q 004067 257 IMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ 336 (776)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 336 (776)
......++...++....+ ......+..+.|.+||+.+++......
T Consensus 194 --------------------------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~gk~~~~~~~~~~ 238 (620)
T COG1506 194 --------------------------WVTNLYVLIEGNGELESL---------TPGEGSISKLAFDADGKSIALLGTESD 238 (620)
T ss_pred --------------------------ceEeeEEEecCCCceEEE---------cCCCceeeeeeeCCCCCeeEEeccCCc
Confidence 012234444456666665 344456888999999996666654432
Q ss_pred ----ceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc-CCceEEEEEeCCCceeeccccC
Q 004067 337 ----TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDINGTCLGPITEG 411 (776)
Q Consensus 337 ----~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~~g~~~~~lt~~ 411 (776)
....+++++.+.++........+..+. +.... ...+++.++|.+.. .|...++.+...++....+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~ 311 (620)
T COG1506 239 RGLAEGDFILLLDGELGEVDGDLSSGDDTRG-----AWAVE--GGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGD 311 (620)
T ss_pred cCccccceEEEEeccccccceeeccCCcccC-----cHHhc--cccCCCcEEEEEecCCCceEEEEEeccCCceeeecCC
Confidence 233566666455554442111110000 00111 12456667777765 6766777776545444444443
Q ss_pred CeEEEEEEeecCCCcEEEEEEcc-CCCceeeEEEEEe
Q 004067 412 DWMVEQIVGVNEASGQVYFTGTL-DGPLESHLYCAKL 447 (776)
Q Consensus 412 ~~~~~~~~~~s~dg~~i~~~~~~-~~~~~~~l~~~~~ 447 (776)
...+.. |+.+++.+++..+. ..| .++|..+.
T Consensus 312 ~~~v~~---f~~~~~~~~~~~s~~~~p--~~i~~~~~ 343 (620)
T COG1506 312 DGGVPG---FDVDGRKLALAYSSPTEP--PEIYLYDR 343 (620)
T ss_pred CceEEE---EeeCCCEEEEEecCCCCc--cceEEEcC
Confidence 344443 45588888888665 335 46666653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-05 Score=78.10 Aligned_cols=270 Identities=11% Similarity=0.012 Sum_probs=165.5
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR 203 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~ 203 (776)
..+.+..|||..|+ .++++..-.+-+++..+......+...... +....|-.||+.+|-.-. +.+-++|..+-.+.
T Consensus 27 ~~vssl~fsp~~P~--d~aVt~S~rvqly~~~~~~~~k~~srFk~~-v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPY--DFAVTSSVRVQLYSSVTRSVRKTFSRFKDV-VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred CcceeEecCCCCCC--ceEEecccEEEEEecchhhhhhhHHhhccc-eeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 46788899995553 366666667777787776666335445543 778899999998776643 56778885543222
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
+...... .++....|+|+++.++....|+
T Consensus 104 R~~~ah~-----------------apv~~~~f~~~d~t~l~s~sDd---------------------------------- 132 (487)
T KOG0310|consen 104 RQLYAHQ-----------------APVHVTKFSPQDNTMLVSGSDD---------------------------------- 132 (487)
T ss_pred HHHhhcc-----------------CceeEEEecccCCeEEEecCCC----------------------------------
Confidence 2111111 1144567999988777654433
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE-EEeccCce
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI-LVEELDSW 362 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~ 362 (776)
..+.+||+++... ++++ .++..++...+|+|-...++++. .-+..|.+||+.+...+.+ .++..+.=
T Consensus 133 -~v~k~~d~s~a~v-~~~l-------~~htDYVR~g~~~~~~~hivvtG---sYDg~vrl~DtR~~~~~v~elnhg~pVe 200 (487)
T KOG0310|consen 133 -KVVKYWDLSTAYV-QAEL-------SGHTDYVRCGDISPANDHIVVTG---SYDGKVRLWDTRSLTSRVVELNHGCPVE 200 (487)
T ss_pred -ceEEEEEcCCcEE-EEEe-------cCCcceeEeeccccCCCeEEEec---CCCceEEEEEeccCCceeEEecCCCcee
Confidence 3367888888876 5544 67889999999999876555542 2567899999987643222 22222211
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC-cee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCcee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
.. .|-| +++++.++ |.+.+.+||+.+ ++. .....+.-.|+.+. +..++..++-.+-+. ..
T Consensus 201 ~v---l~lp--------sgs~iasA---gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~-l~s~~~rLlS~sLD~---~V 262 (487)
T KOG0310|consen 201 SV---LALP--------SGSLIASA---GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLR-LASDSTRLLSGSLDR---HV 262 (487)
T ss_pred eE---EEcC--------CCCEEEEc---CCCeEEEEEecCCceehhhhhcccceEEEEE-eecCCceEeeccccc---ce
Confidence 00 1112 23444433 446899999874 432 23333566677766 566776655444332 25
Q ss_pred eEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 441 HLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 441 ~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
.+|.+.- - .....+.-...+.+.++|||+..++...++
T Consensus 263 KVfd~t~---~----Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 263 KVFDTTN---Y----KVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred EEEEccc---e----EEEEeeecccceeeEEecCCCceEEEeccc
Confidence 6666321 1 133444555567889999999999988765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-05 Score=83.69 Aligned_cols=197 Identities=11% Similarity=0.057 Sum_probs=107.9
Q ss_pred CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCC
Q 004067 228 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT 307 (776)
Q Consensus 228 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 307 (776)
+-+..++||-++ .|+-.+.|+ .+.+|++...+.-.+
T Consensus 370 ~DILDlSWSKn~-fLLSSSMDK------------------------------------TVRLWh~~~~~CL~~------- 405 (712)
T KOG0283|consen 370 ADILDLSWSKNN-FLLSSSMDK------------------------------------TVRLWHPGRKECLKV------- 405 (712)
T ss_pred hhheecccccCC-eeEeccccc------------------------------------cEEeecCCCcceeeE-------
Confidence 335678998755 677776653 378999998887766
Q ss_pred CCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEE
Q 004067 308 DQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWA 386 (776)
Q Consensus 308 ~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (776)
+.|..+++.++|.| |.++++..+ -+..+.+|++-..++..-++-.+ +.-.-.|.|. |+.+++
T Consensus 406 --F~HndfVTcVaFnPvDDryFiSGS----LD~KvRiWsI~d~~Vv~W~Dl~~---lITAvcy~Pd--------Gk~avI 468 (712)
T KOG0283|consen 406 --FSHNDFVTCVAFNPVDDRYFISGS----LDGKVRLWSISDKKVVDWNDLRD---LITAVCYSPD--------GKGAVI 468 (712)
T ss_pred --EecCCeeEEEEecccCCCcEeecc----cccceEEeecCcCeeEeehhhhh---hheeEEeccC--------CceEEE
Confidence 77899999999999 455544443 35568888875543322111110 0111234453 334444
Q ss_pred eccCCceEEEEEeCCCceee---ccccC------CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCcccc
Q 004067 387 SEKTGFRHLYLHDINGTCLG---PITEG------DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA 457 (776)
Q Consensus 387 s~~~g~~~l~~~~~~g~~~~---~lt~~------~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~ 457 (776)
..-.| ..+.++..+-+.. +|-.. ...+.++..+.-+-..|++++++.. +.||...- ...+..
T Consensus 469 Gt~~G--~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr---IRI~d~~~----~~lv~K 539 (712)
T KOG0283|consen 469 GTFNG--YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR---IRIYDGRD----KDLVHK 539 (712)
T ss_pred EEecc--EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCc---eEEEeccc----hhhhhh
Confidence 44555 3333333332211 11000 1145555534344456788776532 45554421 100011
Q ss_pred ceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 458 PVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 458 ~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
.+-..+......++|+.||++|+..+.. ..||+|+..
T Consensus 540 fKG~~n~~SQ~~Asfs~Dgk~IVs~seD----s~VYiW~~~ 576 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFSSDGKHIVSASED----SWVYIWKND 576 (712)
T ss_pred hcccccCCcceeeeEccCCCEEEEeecC----ceEEEEeCC
Confidence 2222223344577999999999999843 368888863
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-05 Score=76.77 Aligned_cols=280 Identities=13% Similarity=0.077 Sum_probs=153.5
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccce-ecCC----------------CCCCCccCceeCCCCCEEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPEL-KLSS----------------SSCSPVIDPHLSSDGTMIAF 186 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~-~l~~----------------~~~~~~~~~~~SpDg~~la~ 186 (776)
..+..+..+| |+++++-. .++.|-.|++.+|+... .+.. .....+...+.||||++||+
T Consensus 143 ~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 143 LSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred CcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 4677889999 99988865 67788888888876330 0110 01112445789999999999
Q ss_pred EECCc-EEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCC
Q 004067 187 VRDCE-LHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSV 265 (776)
Q Consensus 187 ~~~~~-l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 265 (776)
...++ +.+|+.++.+..+.+....+ .+..++|--.-..|+..+.|
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~-----------------~V~~L~fr~gt~~lys~s~D----------------- 265 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRG-----------------AVSSLAFRKGTSELYSASAD----------------- 265 (479)
T ss_pred cCCCceEEEecCcccchhhccccccc-----------------ceeeeeeecCccceeeeecC-----------------
Confidence 87654 66999999988776443321 13344454333344444333
Q ss_pred CCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEE
Q 004067 266 GSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 266 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 345 (776)
..+.+|+++.-..... +.+++..+..+.-+.-++ ++.+.. .+..+.+|+
T Consensus 266 -------------------rsvkvw~~~~~s~vet--------lyGHqd~v~~IdaL~reR-~vtVGg---rDrT~rlwK 314 (479)
T KOG0299|consen 266 -------------------RSVKVWSIDQLSYVET--------LYGHQDGVLGIDALSRER-CVTVGG---RDRTVRLWK 314 (479)
T ss_pred -------------------CceEEEehhHhHHHHH--------HhCCccceeeechhcccc-eEEecc---ccceeEEEe
Confidence 3366777654332111 256666666665554454 333322 244566676
Q ss_pred CCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec---cccC---C-------
Q 004067 346 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP---ITEG---D------- 412 (776)
Q Consensus 346 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~---lt~~---~------- 412 (776)
+ ..+.+.++....... +- ++.-++.-+.+...+| .|++|++..+++-. +..+ .
T Consensus 315 i-~eesqlifrg~~~si-dc----------v~~In~~HfvsGSdnG--~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~ 380 (479)
T KOG0299|consen 315 I-PEESQLIFRGGEGSI-DC----------VAFINDEHFVSGSDNG--SIALWSLLKKKPLFTSRLAHGVIPELDPVNGN 380 (479)
T ss_pred c-cccceeeeeCCCCCe-ee----------EEEecccceeeccCCc--eEEEeeecccCceeEeeccccccCCccccccc
Confidence 6 334455554332100 00 0111122223333456 88888876665322 2111 1
Q ss_pred eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 413 WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 413 ~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
+-+.++. .-+... ++.+++.++- +.||.+. +|-.....+..+.-.+.++.+.|+++|++++....-...-+..
T Consensus 381 ~Witsla-~i~~sd-L~asGS~~G~--vrLW~i~---~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 381 FWITSLA-VIPGSD-LLASGSWSGC--VRLWKIE---DGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cceeeeE-ecccCc-eEEecCCCCc--eEEEEec---CCccccceeeecccccEEEEEEEccCCCEEEEeccccccccee
Confidence 1223332 344444 6666666654 8999998 4432112233333334577889999999888776544444444
Q ss_pred E
Q 004067 493 L 493 (776)
Q Consensus 493 ~ 493 (776)
+
T Consensus 454 ~ 454 (479)
T KOG0299|consen 454 W 454 (479)
T ss_pred e
Confidence 4
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=78.16 Aligned_cols=196 Identities=14% Similarity=0.150 Sum_probs=118.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
.+.++|.+ ..++|..... ...|.+++.....+..|.... -+++..++|-|.|
T Consensus 101 lr~~aWhq--H~~~fava~n---ddvVriy~ksst~pt~Lks~s-----------------------QrnvtclawRPls 152 (445)
T KOG2139|consen 101 LRGVAWHQ--HIIAFAVATN---DDVVRIYDKSSTCPTKLKSVS-----------------------QRNVTCLAWRPLS 152 (445)
T ss_pred eeeEeech--hhhhhhhhcc---CcEEEEeccCCCCCceecchh-----------------------hcceeEEEeccCC
Confidence 46778888 5556554322 246888887775555555421 2578999999932
Q ss_pred CCceEEEEeCCCcEEEEeCCCC-ccc----------e-ecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCce
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCS-KPE----------L-KLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQ 202 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~-~~~----------~-~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~ 202 (776)
- +-|++.-...|-+|..+.. ... . .+.......+..++|.+||..++-.+- ..|.+|++++|..
T Consensus 153 a--selavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 153 A--SELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred c--ceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence 2 3455665566666655421 111 0 111222234778999999999888764 4699999999998
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
..|...+.+ | +.-+.|||||..|+-.+.|.
T Consensus 231 ~pL~~~glg-----g------------~slLkwSPdgd~lfaAt~da--------------------------------- 260 (445)
T KOG2139|consen 231 IPLIPKGLG-----G------------FSLLKWSPDGDVLFAATCDA--------------------------------- 260 (445)
T ss_pred ccccccCCC-----c------------eeeEEEcCCCCEEEEecccc---------------------------------
Confidence 887632221 1 44678999999887666432
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
...+|.......+.-- .-..+++....|||+|+.|+|+.. +...||.+..
T Consensus 261 ---vfrlw~e~q~wt~erw--------~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl~f 310 (445)
T KOG2139|consen 261 ---VFRLWQENQSWTKERW--------ILGSGRVQTACWSPCGSFLLFACS---GSPRLYSLTF 310 (445)
T ss_pred ---eeeeehhcccceecce--------eccCCceeeeeecCCCCEEEEEEc---CCceEEEEee
Confidence 1244432222111100 112337888999999998887764 3344665543
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-06 Score=84.15 Aligned_cols=192 Identities=15% Similarity=0.100 Sum_probs=112.2
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHH---hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHH-HH
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR---SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE-WL 629 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~-~l 629 (776)
.++++++.|.||.... +..+...|. ...+.|+++.+.|+.......... .....+..+|+++-.. .+
T Consensus 2 ~~li~~IPGNPGlv~f-------Y~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~--~~~~~~sL~~QI~hk~~~i 72 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEF-------YEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFS--PNGRLFSLQDQIEHKIDFI 72 (266)
T ss_pred cEEEEEECCCCChHHH-------HHHHHHHHHHhCCCCCeeEEecCCCCcCCccccccc--CCCCccCHHHHHHHHHHHH
Confidence 3789999999987652 222344444 358999999999986554321000 1223345666655433 33
Q ss_pred HHc---CCCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEcCCCCCccc-----------------------c--
Q 004067 630 IKQ---GLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDG-----------------------Y-- 678 (776)
Q Consensus 630 ~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~~~~~~~~~-----------------------~-- 678 (776)
.+. ......+++++|||.|+++++.++-+.+ ..+..++..-|...... +
T Consensus 73 ~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp~G~~l~~~~~~~~~~~~~~~~~~ 152 (266)
T PF10230_consen 73 KELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSPNGRRLTPLLFSPPPLVWLASFLS 152 (266)
T ss_pred HHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCchhHHHHHHHhhccHHHHHHHHHH
Confidence 322 1114578999999999999999999988 56777777766542100 0
Q ss_pred ------c----ccccccccCCCCCC---------------------ccchh---cCChhhhhccC---CCcEEEEecCCC
Q 004067 679 ------D----TFYTEKYMGLPSED---------------------PVGYE---YSSVMHHVHKM---KGKLLLVHGMID 721 (776)
Q Consensus 679 ------~----~~~~~~~~~~~~~~---------------------~~~~~---~~~~~~~~~~i---~~P~lii~G~~D 721 (776)
. ......+++.+... .+.+. +.+........ ..++.+..|.+|
T Consensus 153 ~l~~~lP~~~~~~lv~~~~~~~~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I~~~d~~~~~~~~~~~~~kl~f~fg~~D 232 (266)
T PF10230_consen 153 FLLSLLPESVLRWLVRWVMGFPPPAVEATTKFLLSPRVVRQALYMARDEMREIREDDNDELIKHHNENGDKLWFYFGQND 232 (266)
T ss_pred HHHHHCCHHHHHHHHHHHcCCChHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCcchHHHHHHhccCCCEEEEEEeCCC
Confidence 0 00001112222110 00010 00101111222 468999999999
Q ss_pred CccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 722 ENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 722 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
..||.+...++.+.+.....++.+.. ++..|.|
T Consensus 233 ~Wvp~~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 233 HWVPNETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred CCCCHHHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 99999999999888854444555544 7778876
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-05 Score=76.69 Aligned_cols=133 Identities=18% Similarity=0.143 Sum_probs=87.6
Q ss_pred hhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEE
Q 004067 515 RIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL 594 (776)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 594 (776)
.+........+++.+.. |+..+.+....-++. ++-.=||+.-|.++..+...........+.....+.|.+|+.+
T Consensus 103 ~~~~~~~~~~kRv~Iq~-D~~~IDt~~I~~~~a----~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~f 177 (365)
T PF05677_consen 103 WFSDDEVSSVKRVPIQY-DGVKIDTMAIHQPEA----KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVF 177 (365)
T ss_pred hhccccccceeeEEEee-CCEEEEEEEeeCCCC----CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEE
Confidence 34444556788888987 898888777663332 2334567666644332210000001122345566789999999
Q ss_pred CCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 595 DNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 595 d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
+|||.|.|..... ... .+.|..+.++||+++ ..+.+.+|++.|||+||.++..++..+
T Consensus 178 NYpGVg~S~G~~s---~~d----Lv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 178 NYPGVGSSTGPPS---RKD----LVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred CCCccccCCCCCC---HHH----HHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 9999998743221 122 277899999999975 357889999999999999998866543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00048 Score=64.59 Aligned_cols=284 Identities=10% Similarity=-0.005 Sum_probs=151.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
+.+....+.. +|..|+.. .+...-+|=...|+..-....+.+ .+......-|.+.++--+- +.+.+||+++|+.
T Consensus 11 RplTqiKyN~---eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 11 RPLTQIKYNR---EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred cccceEEecC---CCcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 3455667788 89876654 455444554434443324433333 2566666777887776654 4589999999987
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
......+.. +..+.|+++|..+++...+.-.
T Consensus 87 la~~k~~~~------------------Vk~~~F~~~gn~~l~~tD~~mg------------------------------- 117 (327)
T KOG0643|consen 87 LATWKTNSP------------------VKRVDFSFGGNLILASTDKQMG------------------------------- 117 (327)
T ss_pred EEEeecCCe------------------eEEEeeccCCcEEEEEehhhcC-------------------------------
Confidence 665554432 5577899999998887643211
Q ss_pred CeEEEEEEEcC-------CCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 283 VKVRLGVVSAA-------GGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 283 ~~~~l~~~d~~-------~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
....|.++|+. +.+ ..+| +-.+..+...-|+|-|+.|+... .+..|-.||+.+|....-
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI---------~t~~skit~a~Wg~l~~~ii~Gh----e~G~is~~da~~g~~~v~ 184 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKI---------PTPDSKITSALWGPLGETIIAGH----EDGSISIYDARTGKELVD 184 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEe---------cCCccceeeeeecccCCEEEEec----CCCcEEEEEcccCceeee
Confidence 01345555554 233 2333 22335677889999999887765 566799999998864322
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
.......-+ .+-.+++ +..+..++..+. +-.++|..+-+. +..+. +..+... +++|--.+++.-..
T Consensus 185 s~~~h~~~I-nd~q~s~--------d~T~FiT~s~Dt--takl~D~~tl~v~Kty~t-e~PvN~a-aisP~~d~VilgGG 251 (327)
T KOG0643|consen 185 SDEEHSSKI-NDLQFSR--------DRTYFITGSKDT--TAKLVDVRTLEVLKTYTT-ERPVNTA-AISPLLDHVILGGG 251 (327)
T ss_pred chhhhcccc-ccccccC--------CcceEEecccCc--cceeeeccceeeEEEeee-cccccce-ecccccceEEecCC
Confidence 211111100 0011112 223333445555 445556544322 12221 2333333 47787776665543
Q ss_pred cCCCceeeEEEEEeCC--CCCCcc--------ccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 434 LDGPLESHLYCAKLYP--DWNHTL--------EAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~--~g~~~~--------~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
. +-..|-.+. .|+... .++-++..+=| +++++|+|||+. +++...-+.|.++.+
T Consensus 252 q------eA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks----YsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 252 Q------EAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS----YSSGGEDGYVRLHHF 316 (327)
T ss_pred c------eeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc----cccCCCCceEEEEEe
Confidence 2 122222110 121110 12233333323 678999999984 334333345555443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.5e-05 Score=75.46 Aligned_cols=285 Identities=10% Similarity=-0.015 Sum_probs=162.4
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC---------------
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--------------- 189 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--------------- 189 (776)
..+....||| .|+.|+...-..|-+|+-.......++. ...+....|||.|++|.--++
T Consensus 33 ~p~~~~~~SP---~G~~l~~~~~~~V~~~~g~~~~~l~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 33 WPVAYVSESP---LGTYLFSEHAAGVECWGGPSKAKLVRFR---HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cchhheeecC---cchheehhhccceEEccccchhheeeee---cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 3566778999 9999998877778887766555221222 224788999999999886652
Q ss_pred -CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 190 -CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 190 -~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
+++++||.++|.+..= ..... .....| .-+.||-|.+.+|+...
T Consensus 107 ~n~~~vwd~~sg~iv~s-f~~~~----q~~~~W---------p~~k~s~~D~y~ARvv~--------------------- 151 (561)
T COG5354 107 KNNVFVWDIASGMIVFS-FNGIS----QPYLGW---------PVLKFSIDDKYVARVVG--------------------- 151 (561)
T ss_pred cCceeEEeccCceeEee-ccccC----Cccccc---------ceeeeeecchhhhhhcc---------------------
Confidence 3699999998876432 11111 001122 14668998888877532
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe--EEEEE-EeecCceEEEEEEE
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI--LTAQV-LNRSQTKLKVLKFD 345 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--~l~~~-~~~~~~~~~l~~~d 345 (776)
.+|+++++ |+........ .-....+.+++|||.|. .|+++ .........+.+|.
T Consensus 152 ----------------~sl~i~e~-t~n~~~~p~~------~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 152 ----------------SSLYIHEI-TDNIEEHPFK------NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred ----------------CeEEEEec-CCccccCchh------hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 35788887 5544433221 11234688899999753 54544 33334444555555
Q ss_pred CCCCce---EEEEEeccC--ceeecccccccCCCCccccCCeEEEEe------ccC--CceEEEEEeCCCceeeccccCC
Q 004067 346 IKTGQR---KVILVEELD--SWVNLHDCFTPLDKGVTKYSGGFIWAS------EKT--GFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 346 ~~~g~~---~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~~--g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
+-.+.. +.+.+-.+- .|.. .++.+++.. +++ |..+||+....+...+....-.
T Consensus 209 Ip~~s~l~tk~lfk~~~~qLkW~~--------------~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~ 274 (561)
T COG5354 209 IPKNSVLVTKNLFKVSGVQLKWQV--------------LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLK 274 (561)
T ss_pred ccCCCeeeeeeeEeecccEEEEec--------------CCceEEEEEEEeeecccceeccceEEEEeecccccceecccc
Confidence 543322 222222211 2321 123333322 222 3379999998765544432213
Q ss_pred eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 413 WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 413 ~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
..|-.+. |+|+++...+.+... | ..+-..++ .| .+.-....+.-.+..|||.++++++.--... -+.+
T Consensus 275 ~pVhdf~-W~p~S~~F~vi~g~~-p--a~~s~~~l--r~-----Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl-~gni 342 (561)
T COG5354 275 DPVHDFT-WEPLSSRFAVISGYM-P--ASVSVFDL--RG-----NLRFYFPEQKRNTIFFSPHERYILFAGFDNL-QGNI 342 (561)
T ss_pred ccceeee-ecccCCceeEEeccc-c--cceeeccc--cc-----ceEEecCCcccccccccCcccEEEEecCCcc-ccce
Confidence 3444554 999999877777542 3 23333333 23 2333333334457799999999888643322 2456
Q ss_pred EEEEcCC
Q 004067 493 LLCSLQD 499 (776)
Q Consensus 493 ~~~~~~~ 499 (776)
-++|..+
T Consensus 343 ~i~~~~~ 349 (561)
T COG5354 343 EIFDPAG 349 (561)
T ss_pred EEeccCC
Confidence 6667644
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.6e-06 Score=85.95 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=56.5
Q ss_pred hccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCC-CCeEEEEecCCCCC--CCCCCcHHHHHHHHHHHHHHh
Q 004067 706 VHKMK-GKLLLVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 706 ~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++|+ +|+|.+.|+.|.++++.++..+.+.+...+ .+...++.+++||. +.....+.+++..+.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 56888 999999999999999999999888763333 24557777788997 355667888999999999864
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.7e-05 Score=72.96 Aligned_cols=260 Identities=12% Similarity=0.051 Sum_probs=161.5
Q ss_pred eeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE
Q 004067 127 VTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ 204 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~ 204 (776)
+..+.+.| -.++++.. .|..|.+||+++|+.+..|+.... .+..+++|+-..++..... .++--|||+..+..+
T Consensus 154 Vr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR 229 (460)
T KOG0285|consen 154 VRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR 229 (460)
T ss_pred EEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeecccCceEEEecCCCeeEEEechhhhhHH
Confidence 56788888 77877765 678899999999999866775554 3888999999998776664 468889999887654
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
--.+.-. + +..+...|--+.|+....|
T Consensus 230 ~YhGHlS-----~------------V~~L~lhPTldvl~t~grD------------------------------------ 256 (460)
T KOG0285|consen 230 HYHGHLS-----G------------VYCLDLHPTLDVLVTGGRD------------------------------------ 256 (460)
T ss_pred Hhccccc-----e------------eEEEeccccceeEEecCCc------------------------------------
Confidence 3332211 1 3345566766655544322
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCce
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSW 362 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~ 362 (776)
..+.+||+.++...-. +.++...+..+.+-| |++ ++..+ .+..|.+||+..|+. ..++.+....-
T Consensus 257 st~RvWDiRtr~~V~~--------l~GH~~~V~~V~~~~~dpq-vit~S----~D~tvrlWDl~agkt~~tlt~hkksvr 323 (460)
T KOG0285|consen 257 STIRVWDIRTRASVHV--------LSGHTNPVASVMCQPTDPQ-VITGS----HDSTVRLWDLRAGKTMITLTHHKKSVR 323 (460)
T ss_pred ceEEEeeecccceEEE--------ecCCCCcceeEEeecCCCc-eEEec----CCceEEEeeeccCceeEeeecccceee
Confidence 4579999988754332 156777888888887 554 55544 577899999987775 45555543311
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
.- ...++...|.|... .+|..|++-.|. ..-+..+...+..+. ...|| +++...+.+. ..
T Consensus 324 al------------~lhP~e~~fASas~--dnik~w~~p~g~f~~nlsgh~~iintl~-~nsD~--v~~~G~dng~--~~ 384 (460)
T KOG0285|consen 324 AL------------CLHPKENLFASASP--DNIKQWKLPEGEFLQNLSGHNAIINTLS-VNSDG--VLVSGGDNGS--IM 384 (460)
T ss_pred EE------------ecCCchhhhhccCC--ccceeccCCccchhhccccccceeeeee-eccCc--eEEEcCCceE--EE
Confidence 10 11123345555332 378888855444 444555555555443 44444 6777666543 45
Q ss_pred EEEEEeCCCCCCccccceee---------cCCCCeEEEEEcCCcCEEEEE
Q 004067 442 LYCAKLYPDWNHTLEAPVKL---------TNGKGKHVAVLDHNMRNFVDF 482 (776)
Q Consensus 442 l~~~~~~~~g~~~~~~~~~l---------~~~~~~~~~~~spdg~~l~~~ 482 (776)
.|+.. +|- ..+++ ..+.|+....|...|.+|+..
T Consensus 385 fwdwk---sg~----nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ 427 (460)
T KOG0285|consen 385 FWDWK---SGH----NYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITG 427 (460)
T ss_pred EEecC---cCc----ccccccccccCCccccccceeEEeecccCceEEec
Confidence 55554 332 22222 223355666777777777654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-05 Score=75.60 Aligned_cols=265 Identities=14% Similarity=0.160 Sum_probs=149.3
Q ss_pred ecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC----CceeEEeeCCCCC--ceecCCcccceecccCCcceEEE
Q 004067 163 KLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI----NEQRQLTHGANGN--TVTHGLAEYIAQEEMDRKTGYWW 235 (776)
Q Consensus 163 ~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~----g~~~~lt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w 235 (776)
-++.+.. ..+..+|||||..+|-.+- -.|-+++++- .+.+++..+.... .....+. ...+-+..+.|
T Consensus 107 ylt~HK~-~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-----DH~devn~l~F 180 (430)
T KOG0640|consen 107 YLTSHKS-PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-----DHVDEVNDLDF 180 (430)
T ss_pred EEeeccc-ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-----hccCcccceee
Confidence 4555554 3778899999998887654 3577777651 1222332221110 0000000 11223556778
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcce
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEY 315 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 315 (776)
.|-...|+..+.| ..|.++|...-..++-. ........
T Consensus 181 HPre~ILiS~srD------------------------------------~tvKlFDfsK~saKrA~------K~~qd~~~ 218 (430)
T KOG0640|consen 181 HPRETILISGSRD------------------------------------NTVKLFDFSKTSAKRAF------KVFQDTEP 218 (430)
T ss_pred cchhheEEeccCC------------------------------------CeEEEEecccHHHHHHH------HHhhccce
Confidence 8887766655433 23555665432211100 01334567
Q ss_pred EEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeec--ccccccCCCCccccCCeEEEEeccCCce
Q 004067 316 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL--HDCFTPLDKGVTKYSGGFIWASEKTGFR 393 (776)
Q Consensus 316 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 393 (776)
+..++|.|.|.+|+... ....+.+||.++-+.-.-....+. -... .-.|++ .+++|.+...+|
T Consensus 219 vrsiSfHPsGefllvgT----dHp~~rlYdv~T~QcfvsanPd~q-ht~ai~~V~Ys~--------t~~lYvTaSkDG-- 283 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGT----DHPTLRLYDVNTYQCFVSANPDDQ-HTGAITQVRYSS--------TGSLYVTASKDG-- 283 (430)
T ss_pred eeeEeecCCCceEEEec----CCCceeEEeccceeEeeecCcccc-cccceeEEEecC--------CccEEEEeccCC--
Confidence 88899999999877665 566789999988654332221111 0000 011222 456888888999
Q ss_pred EEEEEe-CCCceeeccccC--CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC--C--
Q 004067 394 HLYLHD-INGTCLGPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK--G-- 466 (776)
Q Consensus 394 ~l~~~~-~~g~~~~~lt~~--~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~--~-- 466 (776)
.|.+|| .++.-.+.+... ...+.+.. |+.+||+|+-++ .+.. ++||.+.. | +.++.-+..+ +
T Consensus 284 ~IklwDGVS~rCv~t~~~AH~gsevcSa~-Ftkn~kyiLsSG-~DS~--vkLWEi~t---~----R~l~~YtGAg~tgrq 352 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRTIGNAHGGSEVCSAV-FTKNGKYILSSG-KDST--VKLWEIST---G----RMLKEYTGAGTTGRQ 352 (430)
T ss_pred cEEeeccccHHHHHHHHhhcCCceeeeEE-EccCCeEEeecC-Ccce--eeeeeecC---C----ceEEEEecCCcccch
Confidence 889998 444445555442 45677766 999999755443 3433 78999884 3 2555555432 1
Q ss_pred --eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeE
Q 004067 467 --KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVL 504 (776)
Q Consensus 467 --~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~ 504 (776)
-..+.|.....++++--... .++..||..++....
T Consensus 353 ~~rtqAvFNhtEdyVl~pDEas---~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 353 KHRTQAVFNHTEDYVLFPDEAS---NSLCSWDARTADRVA 389 (430)
T ss_pred hhhhhhhhcCccceEEcccccc---Cceeeccccchhhhh
Confidence 12346777776666654332 357778877666433
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-07 Score=103.08 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=81.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh-hhc-c
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI-KHN-C 614 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~-~~~-~ 614 (776)
|+..||.|.... ...++||+|++|||.-...-. . .........++.++++||.++||-. -.| |.... ... .
T Consensus 109 L~LnI~~P~~~~-~~~~lPV~v~ihGG~f~~G~~-~--~~~~~~~~~~~~~~vivVt~nYRlg-~~G--fl~~~~~~~~~ 181 (535)
T PF00135_consen 109 LYLNIYTPSNAS-SNSKLPVMVWIHGGGFMFGSG-S--FPPYDGASLAASKDVIVVTINYRLG-AFG--FLSLGDLDAPS 181 (535)
T ss_dssp -EEEEEEETSSS-STTSEEEEEEE--STTTSSCT-T--SGGGHTHHHHHHHTSEEEEE----H-HHH--H-BSSSTTSHB
T ss_pred HHHhhhhccccc-cccccceEEEeecccccCCCc-c--cccccccccccCCCEEEEEeccccc-ccc--cccccccccCc
Confidence 889999998853 223799999999976433211 0 0111224567789999999999932 000 00000 000 2
Q ss_pred CCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCC
Q 004067 615 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPV 672 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~ 672 (776)
+..-+.|+..|++|+.++ ..-|+++|.|+|+|.||..+..++..- ..+|+.+|+.++.
T Consensus 182 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 182 GNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 344588999999999986 335999999999999999999888752 4589999998884
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.8e-06 Score=75.35 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=80.5
Q ss_pred EEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceee
Q 004067 286 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 286 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 364 (776)
.+.+||..+++..+ |.+ ...+..+..|+||++|..+. -..|.-||+++-.. |-.-.-+.-+
T Consensus 166 tVRLWD~rTgt~v~sL~~----------~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~~--lKs~k~P~nV- 227 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEF----------NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFGL--LKSYKMPCNV- 227 (334)
T ss_pred ceEEEEeccCcEEEEEec----------CCCCcceeeccCCCEEEEec-----CceeEEeccccccc--eeeccCcccc-
Confidence 47999999887544 433 34567789999999776653 33477888876332 2221112111
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecc-ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI-TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~l-t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
......| ...++....+++ .+|.+|-.+++..-. -++.+....-+.|||||. +|.+.+.++. +.||
T Consensus 228 ~SASL~P--------~k~~fVaGged~--~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGT--irlW 294 (334)
T KOG0278|consen 228 ESASLHP--------KKEFFVAGGEDF--KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGT--IRLW 294 (334)
T ss_pred ccccccC--------CCceEEecCcce--EEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCce--EEEE
Confidence 1111222 223555555566 788888887765544 344433333345999998 6888888876 8999
Q ss_pred EEEe
Q 004067 444 CAKL 447 (776)
Q Consensus 444 ~~~~ 447 (776)
.+..
T Consensus 295 Qt~~ 298 (334)
T KOG0278|consen 295 QTTP 298 (334)
T ss_pred EecC
Confidence 9986
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00021 Score=85.17 Aligned_cols=287 Identities=11% Similarity=0.042 Sum_probs=149.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
|..+++++++..|+..... ...|.++|.++.....+......+.....+.. .. ........+++
T Consensus 570 P~gvavd~~~g~lyVaDs~----n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~-a~---------f~~P~GIavd~-- 633 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSN----HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFED-AT---------FNRPQGLAYNA-- 633 (1057)
T ss_pred CceEEEECCCCeEEEEECC----CCeEEEEeCCCCEEEEEccCCCcCCCCCchhc-cc---------cCCCcEEEEeC--
Confidence 4678899887767654432 25799999987654444321111110011110 01 12345678888
Q ss_pred CCceEEEEe--CCCcEEEEeCCCCccceecCCC-------CC---------CCccCceeCCCCCEEEEEE--CCcEEEEe
Q 004067 137 SKKKIIMVP--LPDGIYFQDLSCSKPELKLSSS-------SC---------SPVIDPHLSSDGTMIAFVR--DCELHVLN 196 (776)
Q Consensus 137 ~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~-------~~---------~~~~~~~~SpDg~~la~~~--~~~l~~~~ 196 (776)
+|..|+++ .+..|.++|+.++..+ .+... .+ .....++++|++..|.... ++.|++++
T Consensus 634 -~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d 711 (1057)
T PLN02919 634 -KKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYN 711 (1057)
T ss_pred -CCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEE
Confidence 88888776 3456888998887765 44221 00 0123468899666554443 35799999
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+.+|..+.+.-++.. ....+.. .....+....+++++|||+.|++.....
T Consensus 712 ~~~g~v~~~~G~G~~-~~~~g~~--~~~~~~~~P~GIavspdG~~LYVADs~n--------------------------- 761 (1057)
T PLN02919 712 ISDGVTRVFSGDGYE-RNLNGSS--GTSTSFAQPSGISLSPDLKELYIADSES--------------------------- 761 (1057)
T ss_pred CCCCeEEEEecCCcc-ccCCCCc--cccccccCccEEEEeCCCCEEEEEECCC---------------------------
Confidence 998877655422210 0000100 0001122245789999999877654221
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCC-C----CCC--------CCcceEEEEEeccCCeEEEEEEeecCceEEEEE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGG-T----DQN--------YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~-~----~~~--------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 343 (776)
..|.+||++++....+.-..+. + ..- .....-..+++++||++ +++ +. .+..|.+
T Consensus 762 --------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-YVA-Ds--~N~rIrv 829 (1057)
T PLN02919 762 --------SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-YVA-DS--YNHKIKK 829 (1057)
T ss_pred --------CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcE-EEE-EC--CCCEEEE
Confidence 3467777776654433210000 0 000 00112246889999973 333 22 3456999
Q ss_pred EECCCCceEEEEEeccCceeec---ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee
Q 004067 344 FDIKTGQRKVILVEELDSWVNL---HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 405 (776)
Q Consensus 344 ~d~~~g~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~ 405 (776)
||++++....+.......+.+. ...|. .+.+++.++++-+|+++. +...|.++++++++.
T Consensus 830 iD~~tg~v~tiaG~G~~G~~dG~~~~a~l~-~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 830 LDPATKRVTTLAGTGKAGFKDGKALKAQLS-EPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCeEEEEeccCCcCCCCCcccccccC-CceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence 9999988877654322222111 11121 112233333333444433 223788888877654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.4e-05 Score=68.93 Aligned_cols=236 Identities=14% Similarity=0.125 Sum_probs=141.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+++.-||++..--.+ ...|.+||+..|..-.... .++..+.+..-+.
T Consensus 20 V~avryN~dGnY~ltcGs-----drtvrLWNp~rg~liktYs-----------------------ghG~EVlD~~~s~-- 69 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGS-----DRTVRLWNPLRGALIKTYS-----------------------GHGHEVLDAALSS-- 69 (307)
T ss_pred eEEEEEccCCCEEEEcCC-----CceEEeecccccceeeeec-----------------------CCCceeeeccccc--
Confidence 478899999998875433 3579999998887533332 1234566666666
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce--eEEeeCCCCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ--RQLTHGANGN 212 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~--~~lt~~~~~~ 212 (776)
|+..++.. .+..+++||+++|+..+++-.+. +.+..++|..+..-++..+. ..+.+||-.+... .|+..+-..
T Consensus 70 -Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~-aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D- 146 (307)
T KOG0316|consen 70 -DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHL-AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD- 146 (307)
T ss_pred -cccccccCCCCceEEEEEcccCeeeeeccccc-ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-
Confidence 88888866 56779999999999885555443 45888999877765554442 4577887765433 333221110
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
+ +.++.. .+-.|+-.+.| ..+..||+
T Consensus 147 ----~------------V~Si~v--~~heIvaGS~D------------------------------------GtvRtydi 172 (307)
T KOG0316|consen 147 ----G------------VSSIDV--AEHEIVAGSVD------------------------------------GTVRTYDI 172 (307)
T ss_pred ----c------------eeEEEe--cccEEEeeccC------------------------------------CcEEEEEe
Confidence 0 111111 12233333322 23567777
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC-ceeeccccccc
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTP 371 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~ 371 (776)
..|....- .....+..++||+||+..+..+ -+..|.++|-++|+.-........ .|- ....+.
T Consensus 173 R~G~l~sD----------y~g~pit~vs~s~d~nc~La~~----l~stlrLlDk~tGklL~sYkGhkn~eyk-ldc~l~- 236 (307)
T KOG0316|consen 173 RKGTLSSD----------YFGHPITSVSFSKDGNCSLASS----LDSTLRLLDKETGKLLKSYKGHKNMEYK-LDCCLN- 236 (307)
T ss_pred ecceeehh----------hcCCcceeEEecCCCCEEEEee----ccceeeecccchhHHHHHhcccccceee-eeeeec-
Confidence 66654321 1234578899999999444433 356799999999986443332211 111 111111
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
..+..++...++| .+|.||+..+.
T Consensus 237 -------qsdthV~sgSEDG--~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 237 -------QSDTHVFSGSEDG--KVYFWDLVDET 260 (307)
T ss_pred -------ccceeEEeccCCc--eEEEEEeccce
Confidence 1344677777888 89999976543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00036 Score=71.13 Aligned_cols=272 Identities=11% Similarity=0.058 Sum_probs=154.1
Q ss_pred ChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHH
Q 004067 42 SLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERL 120 (776)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~ 120 (776)
....+|+.++. -.+..+.|.+||+-|. +....+|.+|+..+.+. +++..|+
T Consensus 236 k~~~~fek~ek--k~Vl~v~F~engdviT------gDS~G~i~Iw~~~~~~~~k~~~aH~-------------------- 287 (626)
T KOG2106|consen 236 KRQGIFEKREK--KFVLCVTFLENGDVIT------GDSGGNILIWSKGTNRISKQVHAHD-------------------- 287 (626)
T ss_pred EEeeccccccc--eEEEEEEEcCCCCEEe------ecCCceEEEEeCCCceEEeEeeecC--------------------
Confidence 34556655443 2357889999999885 44457899999977664 4444433
Q ss_pred HHhcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCC-CCCccCceeCCCCC-EEEEEECCcEEEEecC
Q 004067 121 RERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSS-CSPVIDPHLSSDGT-MIAFVRDCELHVLNLL 198 (776)
Q Consensus 121 ~~~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~SpDg~-~la~~~~~~l~~~~l~ 198 (776)
.++....--. ||+.|-=.+|..|-.||-.=.+.+ .+.-.+ .+.++ ..-+.+. .++=+++|.|-.=+++
T Consensus 288 ----ggv~~L~~lr---~GtllSGgKDRki~~Wd~~y~k~r-~~elPe~~G~iR--tv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 288 ----GGVFSLCMLR---DGTLLSGGKDRKIILWDDNYRKLR-ETELPEQFGPIR--TVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred ----CceEEEEEec---CccEeecCccceEEeccccccccc-cccCchhcCCee--EEecCCCcEEEeeccceEEEeeec
Confidence 4788888888 998777447778999983333333 222111 11122 2223222 2223345556666666
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
++-.. ++..... . ..+++-.|+...++....+
T Consensus 358 ~~f~~-~v~gh~d-------e----------lwgla~hps~~q~~T~gqd------------------------------ 389 (626)
T KOG2106|consen 358 NGFTL-TVQGHGD-------E----------LWGLATHPSKNQLLTCGQD------------------------------ 389 (626)
T ss_pred CCceE-EEEeccc-------c----------eeeEEcCCChhheeeccCc------------------------------
Confidence 55432 2221110 0 2256778888877765433
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 358 (776)
.++.+|+ ..++..- ..-......+.|.|-| .++... ..+...++|.++...-.+-.+.
T Consensus 390 ------k~v~lW~--~~k~~wt---------~~~~d~~~~~~fhpsg-~va~Gt----~~G~w~V~d~e~~~lv~~~~d~ 447 (626)
T KOG2106|consen 390 ------KHVRLWN--DHKLEWT---------KIIEDPAECADFHPSG-VVAVGT----ATGRWFVLDTETQDLVTIHTDN 447 (626)
T ss_pred ------ceEEEcc--CCceeEE---------EEecCceeEeeccCcc-eEEEee----ccceEEEEecccceeEEEEecC
Confidence 3467777 2222111 0112235567899999 666655 3456788898885544444432
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.+.-. -.|+| ++.++.....++.-.||+++.+|.+...+-........-+.||+|++++.-.+
T Consensus 448 ~~ls~---v~ysp--------~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 448 EQLSV---VRYSP--------DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred CceEE---EEEcC--------CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 22111 12444 34466677788877788888888776655443323223345999999654443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0024 Score=65.42 Aligned_cols=272 Identities=11% Similarity=0.043 Sum_probs=147.9
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCcccee---cCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELK---LSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~---l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~ 201 (776)
.+....|.| -+..|+.+ ..+.||.|+++++....+ +...+...+..+.|.++|+-|-=-++++|.+|+..+..
T Consensus 202 ~v~~a~FHP---td~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 202 VVFLATFHP---TDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNR 278 (626)
T ss_pred eEEEEEecc---CCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCce
Confidence 577889999 77766665 778999999999876521 22222223667899999998777777899999987765
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
+.+-.....+ | +..+.---||+.| ....|
T Consensus 279 ~~k~~~aH~g-----g------------v~~L~~lr~Gtll-SGgKD--------------------------------- 307 (626)
T KOG2106|consen 279 ISKQVHAHDG-----G------------VFSLCMLRDGTLL-SGGKD--------------------------------- 307 (626)
T ss_pred EEeEeeecCC-----c------------eEEEEEecCccEe-ecCcc---------------------------------
Confidence 5433221111 0 2233344555522 21111
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCc
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 361 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 361 (776)
..|..||-+=++.+.+.+ +...+.+..++ +.+--|+....| ..|..=.++++-...+..+.+.-
T Consensus 308 ---Rki~~Wd~~y~k~r~~el-------Pe~~G~iRtv~--e~~~di~vGTtr----N~iL~Gt~~~~f~~~v~gh~del 371 (626)
T KOG2106|consen 308 ---RKIILWDDNYRKLRETEL-------PEQFGPIRTVA--EGKGDILVGTTR----NFILQGTLENGFTLTVQGHGDEL 371 (626)
T ss_pred ---ceEEeccccccccccccC-------chhcCCeeEEe--cCCCcEEEeecc----ceEEEeeecCCceEEEEecccce
Confidence 345667744444444433 22333333332 221124333322 23545555655555555555555
Q ss_pred eeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 362 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
|.-. ..| ++..+.++..++ ++.+|+-.--+...+.... ... ..|.|.| .|++-... -+
T Consensus 372 wgla---~hp--------s~~q~~T~gqdk--~v~lW~~~k~~wt~~~~d~--~~~-~~fhpsg-~va~Gt~~-----G~ 429 (626)
T KOG2106|consen 372 WGLA---THP--------SKNQLLTCGQDK--HVRLWNDHKLEWTKIIEDP--AEC-ADFHPSG-VVAVGTAT-----GR 429 (626)
T ss_pred eeEE---cCC--------ChhheeeccCcc--eEEEccCCceeEEEEecCc--eeE-eeccCcc-eEEEeecc-----ce
Confidence 5321 111 233556666666 8888882222233444322 222 3488988 44444332 24
Q ss_pred EEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 442 LYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 442 l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
...++..+ . ..++.-++......+.+||||..||..+.. +.||++..+
T Consensus 430 w~V~d~e~--~---~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d----~~iyiy~Vs 477 (626)
T KOG2106|consen 430 WFVLDTET--Q---DLVTIHTDNEQLSVVRYSPDGAFLAVGSHD----NHIYIYRVS 477 (626)
T ss_pred EEEEeccc--c---eeEEEEecCCceEEEEEcCCCCEEEEecCC----CeEEEEEEC
Confidence 55666522 1 234444554446677999999999998655 347766654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.9e-06 Score=80.41 Aligned_cols=228 Identities=12% Similarity=0.073 Sum_probs=127.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|-++..+++- +.....|.+|+..+++...+..-. ....++.+..|.+
T Consensus 178 v~~v~~l~~sdtlat-----gg~Dr~Ik~W~v~~~k~~~~~tLa---------------------Gs~g~it~~d~d~-- 229 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLAT-----GGSDRIIKLWNVLGEKSELISTLA---------------------GSLGNITSIDFDS-- 229 (459)
T ss_pred cceeEEccCcchhhh-----cchhhhhhhhhcccchhhhhhhhh---------------------ccCCCcceeeecC--
Confidence 467778888777773 333457888888877732222110 1124688889998
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE-EeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ-LTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~-lt~~~~~~~ 213 (776)
|+++++-. .++.+.+|+++.....-+|+.+. ..+....|.....+++-.+. ..|-.||+..+.... +........
T Consensus 230 -~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt-dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnD 307 (459)
T KOG0288|consen 230 -DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT-DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCND 307 (459)
T ss_pred -CCceEEeecCCCceeeeeccchhhhhhhcccc-cceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccc
Confidence 88887755 67789999999887764666543 34777777776665333322 234444443332110 100000011
Q ss_pred eecCCc------------cc-------cee-cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCccee
Q 004067 214 VTHGLA------------EY-------IAQ-EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDH 273 (776)
Q Consensus 214 ~~~~~~------------~~-------~~~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (776)
+.++.. -| ... +-.+++.++..++||..|+..+.+
T Consensus 308 I~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD------------------------- 362 (459)
T KOG0288|consen 308 IVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD------------------------- 362 (459)
T ss_pred eEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC-------------------------
Confidence 111100 00 000 011234455556666555543322
Q ss_pred cCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 274 AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 274 ~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
-.+-++|+.+.++...-...+ ..-......+.|||||.+++..+ -++.||+|+..+|+...
T Consensus 363 -----------dtl~viDlRt~eI~~~~sA~g----~k~asDwtrvvfSpd~~YvaAGS----~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 363 -----------DTLKVIDLRTKEIRQTFSAEG----FKCASDWTRVVFSPDGSYVAAGS----ADGSVYIWSVFTGKLEK 423 (459)
T ss_pred -----------CceeeeecccccEEEEeeccc----cccccccceeEECCCCceeeecc----CCCcEEEEEccCceEEE
Confidence 235677777777665433211 22223366799999999887665 56679999999999876
Q ss_pred EEEec
Q 004067 354 ILVEE 358 (776)
Q Consensus 354 l~~~~ 358 (776)
+....
T Consensus 424 ~l~~s 428 (459)
T KOG0288|consen 424 VLSLS 428 (459)
T ss_pred EeccC
Confidence 65543
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=82.83 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=98.2
Q ss_pred HHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 582 QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 582 ~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
-.....|+-|+.+.+.-.. ....+++|+..+...++++ -+-+..|..|+|-|.||.+++++|+.
T Consensus 94 G~AL~~GHPvYFV~F~p~P-------------~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~ 160 (581)
T PF11339_consen 94 GVALRAGHPVYFVGFFPEP-------------EPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAAL 160 (581)
T ss_pred HHHHHcCCCeEEEEecCCC-------------CCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhc
Confidence 3344569988888765211 1223467776654444332 12244599999999999999999999
Q ss_pred CCCceEEEE-EcCCCCCcccc------------------------------c---------------cccc---------
Q 004067 659 FPDVFQCAV-SGAPVTSWDGY------------------------------D---------------TFYT--------- 683 (776)
Q Consensus 659 ~~~~~~~~v-~~~~~~~~~~~------------------------------~---------------~~~~--------- 683 (776)
+|+.+.-+| ..+|+..|... + ..|.
T Consensus 161 ~Pd~~gplvlaGaPlsywaG~~g~nPmRy~ggl~ggsw~~~l~sDlG~G~fdGa~lv~nFe~lnPa~~~w~K~y~Ly~~i 240 (581)
T PF11339_consen 161 RPDLVGPLVLAGAPLSYWAGERGDNPMRYMGGLLGGSWLTALVSDLGNGRFDGAWLVQNFENLNPANTYWSKYYDLYANI 240 (581)
T ss_pred CcCccCceeecCCCcccccCCCCCCcHHHhcCCCcchHHHHHHHHcCCCccCcHHHHhhhhccChhHHHHHHHHHHHhcc
Confidence 999886555 45665443200 0 0000
Q ss_pred ----------ccccCCCCC-Ccc--------chh-----------cCChhhhhccCCCcEEEEecCCCCccChHHHHHH-
Q 004067 684 ----------EKYMGLPSE-DPV--------GYE-----------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL- 732 (776)
Q Consensus 684 ----------~~~~~~~~~-~~~--------~~~-----------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~- 732 (776)
++|.+.+.. ..+ .|. ..-..-.+++|++|+.++.+..|.++||+++...
T Consensus 241 D~e~~Rfl~FErWwgg~~~l~~~ei~~Iv~nLFvgNrL~~g~~~~~~G~~~DLr~Ir~Piivfas~gDnITPP~QaL~WI 320 (581)
T PF11339_consen 241 DTERERFLEFERWWGGFYDLNGEEILWIVENLFVGNRLAKGEFRVSDGRRVDLRNIRSPIIVFASYGDNITPPQQALNWI 320 (581)
T ss_pred CCchhhhhHHHHHhCCccCCCHHHHHHHHHHHhccchhccCceeccCCcEeehhhCCCCEEEEeccCCCCCChhHhccch
Confidence 000111000 000 000 0011234788999999999999999999988433
Q ss_pred ------HHHHHHCCCCeEEEEecCCCCC
Q 004067 733 ------INALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 733 ------~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
.+.++.+|..+-+.+.+..||-
T Consensus 321 ~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 321 PDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred HhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 3567777888888889999995
|
Their function is unknown. |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.2e-06 Score=81.98 Aligned_cols=182 Identities=12% Similarity=0.063 Sum_probs=111.7
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEe-cCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFD-PKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
.-++|++||..|+--.. ...+.+|+ +.-... . -+..++..|.+..|||
T Consensus 148 k~vaf~~~gs~latgg~-----dg~lRv~~~Ps~~t~---l---------------------~e~~~~~eV~DL~FS~-- 196 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT-----DGTLRVWEWPSMLTI---L---------------------EEIAHHAEVKDLDFSP-- 196 (398)
T ss_pred eEEEEcCCCCEeeeccc-----cceEEEEecCcchhh---h---------------------hhHhhcCccccceeCC--
Confidence 56789999999995433 34577777 332211 0 0112345788999999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCC-CCCccCceeCCCC---CEEEEEECC---cEEEEe--cCCC----cee
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSS-CSPVIDPHLSSDG---TMIAFVRDC---ELHVLN--LLIN----EQR 203 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~SpDg---~~la~~~~~---~l~~~~--l~~g----~~~ 203 (776)
||+.|++.......+|++.+|.....+++.. .......+|+-|+ ...++.... .+..++ +..+ ..+
T Consensus 197 -dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~ 275 (398)
T KOG0771|consen 197 -DGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR 275 (398)
T ss_pred -CCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh
Confidence 9999999877799999999996654555322 2235667888887 333333321 121111 1112 222
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
+.+.... -+.++..|+||+.++..+.+
T Consensus 276 ~~~~~~~------------------siSsl~VS~dGkf~AlGT~d----------------------------------- 302 (398)
T KOG0771|consen 276 KKIKRFK------------------SISSLAVSDDGKFLALGTMD----------------------------------- 302 (398)
T ss_pred hhhhccC------------------cceeEEEcCCCcEEEEeccC-----------------------------------
Confidence 2221111 15688999999999987753
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
..+-+++..+=+...+-. ..|...++.+.||||.+.++.++
T Consensus 303 -GsVai~~~~~lq~~~~vk-------~aH~~~VT~ltF~Pdsr~~~svS 343 (398)
T KOG0771|consen 303 -GSVAIYDAKSLQRLQYVK-------EAHLGFVTGLTFSPDSRYLASVS 343 (398)
T ss_pred -CcEEEEEeceeeeeEeeh-------hhheeeeeeEEEcCCcCcccccc
Confidence 234566655544444322 34667899999999998777654
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=87.91 Aligned_cols=232 Identities=19% Similarity=0.107 Sum_probs=123.9
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhh----h
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS----I 610 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~----~ 610 (776)
..+.+.++.|.... ..+++|++++.||.......... .+..++..++.++..+....+...-..... .
T Consensus 31 ~~~~~~l~~p~~~~-~~~~~p~v~~~h~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (299)
T COG1073 31 IALAAVLHLPPSGN-EEKKLPAVVFLHGFGSSKEQSLG-------YAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEG 102 (299)
T ss_pred ceeeeEEEecCCCC-ccccCceEEeccCccccccCcch-------HHHHhhhceeEEeeeccccccccccccccccCccc
Confidence 56888888887642 22578999999997665432111 367788889998888752221111000000 0
Q ss_pred -hhccC-CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC---ceEEEEEcCCCCCc----------
Q 004067 611 -KHNCG-RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSGAPVTSW---------- 675 (776)
Q Consensus 611 -~~~~~-~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~---~~~~~v~~~~~~~~---------- 675 (776)
..... ..........+..-........++....|+++||..+..++...+. ..+..+...+....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~ 182 (299)
T COG1073 103 YAEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANP 182 (299)
T ss_pred cccccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccch
Confidence 00000 0000000000000000001122566777777777777666665441 11111111111000
Q ss_pred ---cc------cccccccc-----ccCCCCCCccchhcCChhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 676 ---DG------YDTFYTEK-----YMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 676 ---~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
.. ....+... ...........+...++...+.++. .|+|++||..|..+|...+..++......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~- 261 (299)
T COG1073 183 ELARELIDYLITPGGFAPLPAPEAPLDTLPLRAVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER- 261 (299)
T ss_pred HHHHhhhhhhccCCCCCCCCcccccccccccchhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC-
Confidence 00 00000000 0000000011244556666677777 69999999999999999999999988554
Q ss_pred CCeEEEEecCCCCCCCCCCcH--HHHHHHHHHHHHHhC
Q 004067 741 KPYEILIFPDERHMPRRHRDR--IYMEERIWEFIERTL 776 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~fl~~~l 776 (776)
+....++++++|........ .+.+..+.+||.++|
T Consensus 262 -~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 262 -PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred -CceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 66788899999987643333 489999999999875
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-05 Score=79.02 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=125.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCC-------CCCCCCCCHHHHH-HHHHHHHhcCCe
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDG-------GLDENNISPEEKL-RRERLRERGLGV 127 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~-------~~~~~~i~~~~~~-~~~~~~~~~~~~ 127 (776)
+++..+-+|++++.-.+. ..++.+|+++.... .+|+.|.+. -.....++..... +... ......
T Consensus 222 it~~d~d~~~~~~iAas~-----d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W--Dl~k~~ 294 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASN-----DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW--DLQKAY 294 (459)
T ss_pred cceeeecCCCceEEeecC-----CCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh--hhhhhh
Confidence 578899999998864443 34699999987654 344444330 0011111111000 0000 000011
Q ss_pred eeEEEeecCCCceEEE-----Ee--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCC
Q 004067 128 TRYEWVKTSSKKKIIM-----VP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLI 199 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~-----~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~ 199 (776)
..-..-|.|.+....+ ++ -+.+|-.||..++..+ .-.+.. +.+..+..|+||..|...+ ++.+-++|+.+
T Consensus 295 C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~-~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 295 CSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKT-RSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred eeccccccccccceEecceeeeecccccceEEEeccCCcee-eEeecC-cceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 1111112222332221 22 4567899998888776 332222 3588999999999776654 45689999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
.++++...... +.+ ..+| ....|||||.+++-.+.+
T Consensus 373 ~eI~~~~sA~g---~k~-asDw---------trvvfSpd~~YvaAGS~d------------------------------- 408 (459)
T KOG0288|consen 373 KEIRQTFSAEG---FKC-ASDW---------TRVVFSPDGSYVAAGSAD------------------------------- 408 (459)
T ss_pred ccEEEEeeccc---ccc-cccc---------ceeEECCCCceeeeccCC-------------------------------
Confidence 99987755332 111 2233 367899999998876643
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
..||+|++.+++....--. ......+..++|+|-|+.++.+.
T Consensus 409 -----gsv~iW~v~tgKlE~~l~~------s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 409 -----GSVYIWSVFTGKLEKVLSL------STSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred -----CcEEEEEccCceEEEEecc------CCCCcceEEEEEcCCCchhhccc
Confidence 4589999999997654221 22333789999999998776554
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0003 Score=70.36 Aligned_cols=157 Identities=9% Similarity=0.043 Sum_probs=105.4
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEE-ecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVL-NLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~-~l~~g~~ 202 (776)
..+....++| |...++.. .+..|++|..-.......+...+ ..+......|.|.+++..++..-|.+ +..+|..
T Consensus 262 kki~~v~~~~---~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~-~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~ 337 (506)
T KOG0289|consen 262 KKITSVKFHK---DLDTVITASADEIIRVWSVPLSSEPTSSRPHE-EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ 337 (506)
T ss_pred eEEEEEEecc---chhheeecCCcceEEeeccccccCcccccccc-ccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence 3577888888 88877765 56678889876655541233333 35888999999999999998776655 5566644
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
.......... +. +...+|.|||-.+.....
T Consensus 338 lt~vs~~~s~-----v~----------~ts~~fHpDgLifgtgt~----------------------------------- 367 (506)
T KOG0289|consen 338 LTVVSDETSD-----VE----------YTSAAFHPDGLIFGTGTP----------------------------------- 367 (506)
T ss_pred EEEEeecccc-----ce----------eEEeeEcCCceEEeccCC-----------------------------------
Confidence 3332221111 11 346789999954332221
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
...|.+||++++....- ++++.+.+..++||.+|-+++... ++..+.+||+..
T Consensus 368 -d~~vkiwdlks~~~~a~--------Fpght~~vk~i~FsENGY~Lat~a----dd~~V~lwDLRK 420 (506)
T KOG0289|consen 368 -DGVVKIWDLKSQTNVAK--------FPGHTGPVKAISFSENGYWLATAA----DDGSVKLWDLRK 420 (506)
T ss_pred -CceEEEEEcCCcccccc--------CCCCCCceeEEEeccCceEEEEEe----cCCeEEEEEehh
Confidence 15689999998763221 256888899999999998888776 445599999965
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-05 Score=80.69 Aligned_cols=202 Identities=18% Similarity=0.160 Sum_probs=113.0
Q ss_pred EEEEEEc-CCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC--CCchhhhhhhhhc
Q 004067 537 LYGALYK-PDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA--RRGLKFEASIKHN 613 (776)
Q Consensus 537 l~~~~~~-P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g--~~~~~~~~~~~~~ 613 (776)
-..|++. |... .++.-|+||++|||+...............+...+ . ...++++||.-.. ..+..+.
T Consensus 106 ~s~Wlvk~P~~~--~pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~~~~yP------ 175 (374)
T PF10340_consen 106 QSYWLVKAPNRF--KPKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEHGHKYP------ 175 (374)
T ss_pred ceEEEEeCCccc--CCCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccCCCcCc------
Confidence 3467776 6542 12345999999998655432211100011111122 2 5689999987543 1122222
Q ss_pred cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh--C---CCceEEEEEcCCCCCccccc----c----
Q 004067 614 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR--F---PDVFQCAVSGAPVTSWDGYD----T---- 680 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~--~---~~~~~~~v~~~~~~~~~~~~----~---- 680 (776)
..+.++.+..++|.+.. ..++|.++|-|+||.+++.++.. + ...-+.+|+++|........ .
T Consensus 176 ---tQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~ 250 (374)
T PF10340_consen 176 ---TQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHD 250 (374)
T ss_pred ---hHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccc
Confidence 23667899999999543 34689999999999999988753 1 11247899999987654110 0
Q ss_pred -------------cccccccCC--CCCCc--cchhcC-C--hhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 681 -------------FYTEKYMGL--PSEDP--VGYEYS-S--VMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 681 -------------~~~~~~~~~--~~~~~--~~~~~~-~--~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
.+.+.|.+. +.... ..+... . ....-..+ +.-++++.|+++-. ..+.+++++.+..
T Consensus 251 n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf--rddI~~~~~~~~~ 328 (374)
T PF10340_consen 251 NEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF--RDDILEWAKKLND 328 (374)
T ss_pred cccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc--HHHHHHHHHHHhh
Confidence 111222222 10000 000000 0 00111121 25799999988744 3578889998875
Q ss_pred CCC-----CeEEEEecCCCCCC
Q 004067 739 ARK-----PYEILIFPDERHMP 755 (776)
Q Consensus 739 ~~~-----~~~~~~~~~~~H~~ 755 (776)
.+. ..++.+.+++.|.-
T Consensus 329 ~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 329 VKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred cCccccCCcceEEEecCCcccc
Confidence 543 36777888888953
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.8e-05 Score=67.92 Aligned_cols=137 Identities=15% Similarity=0.063 Sum_probs=90.4
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCcc
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPV 695 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (776)
....+|-++.++...... .+.++|++||+|+.+++.++.+....++++++++|..--+ +.....
T Consensus 40 ~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~-------------~~~~~~ 103 (181)
T COG3545 40 APVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSR-------------PEIRPK 103 (181)
T ss_pred CCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccc-------------cccchh
Confidence 334566666555444432 3459999999999999999988766889999998863211 000000
Q ss_pred chhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC--CCCCcHHHHHHHHHHHHH
Q 004067 696 GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 696 ~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~ 773 (776)
.....++. ...++.-|.++++..+|+.++++.++.+++.+-+ .++....+||.. .......+.+..+.+|+.
T Consensus 104 ~~~tf~~~-p~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s 177 (181)
T COG3545 104 HLMTFDPI-PREPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALLAQLLS 177 (181)
T ss_pred hccccCCC-ccccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHHHHHhh
Confidence 11111111 1223446899999999999999999999998732 577788889964 234456666777777765
Q ss_pred H
Q 004067 774 R 774 (776)
Q Consensus 774 ~ 774 (776)
+
T Consensus 178 ~ 178 (181)
T COG3545 178 R 178 (181)
T ss_pred h
Confidence 4
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0018 Score=75.83 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=117.9
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEE----ecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSF----DPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~----~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
..+.++.+-+|...|...... +.|.++ +.++.+...+...+ .|+.+.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~-----Gdi~~~~~~~~~~~~~~E~VG~vd------------------------~GI~a~ 126 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALAS-----GDIILVREDPDPDEDEIEIVGSVD------------------------SGILAA 126 (928)
T ss_pred CcEEEEEeccCCCcEEEEECC-----ceEEEEEccCCCCCceeEEEEEEc------------------------CcEEEE
Confidence 345677777888777766653 358888 77777777666543 489999
Q ss_pred EEeecCCCceEEEEeC-CCcEEEEeC----------C--------------CCccceecCC-------------C-----
Q 004067 131 EWVKTSSKKKIIMVPL-PDGIYFQDL----------S--------------CSKPELKLSS-------------S----- 167 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~~-~~~l~~~d~----------~--------------~~~~~~~l~~-------------~----- 167 (776)
+||| |+..|++.. .++|.+++. . |++.+ ++.. .
T Consensus 127 ~WSP---D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT-QF~Gs~gK~aa~~~~~p~~~~~d 202 (928)
T PF04762_consen 127 SWSP---DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKET-QFHGSAGKAAARQLRDPTVPKVD 202 (928)
T ss_pred EECC---CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccC-ccCcchhhhhhhhccCCCCCccc
Confidence 9999 999999873 344443321 0 11111 1100 0
Q ss_pred -----CCCCccCceeCCCCCEEEEEEC-------CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEE
Q 004067 168 -----SCSPVIDPHLSSDGTMIAFVRD-------CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWW 235 (776)
Q Consensus 168 -----~~~~~~~~~~SpDg~~la~~~~-------~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 235 (776)
.......++|-.||+++|..+- +.+.+|+-+ |+.... .++ .. +.-..++|
T Consensus 203 ~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st-SE~-----v~-----------gLe~~l~W 264 (928)
T PF04762_consen 203 EGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST-SEP-----VD-----------GLEGALSW 264 (928)
T ss_pred cCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-ccc-----CC-----------CccCCccC
Confidence 0001223567788888877652 124444433 322111 111 11 11336789
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcce
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEY 315 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 315 (776)
.|.|..||........ ..|..+..+|-+...+.+. ....+..
T Consensus 265 rPsG~lIA~~q~~~~~---------------------------------~~VvFfErNGLrhgeF~l~-----~~~~~~~ 306 (928)
T PF04762_consen 265 RPSGNLIASSQRLPDR---------------------------------HDVVFFERNGLRHGEFTLR-----FDPEEEK 306 (928)
T ss_pred CCCCCEEEEEEEcCCC---------------------------------cEEEEEecCCcEeeeEecC-----CCCCCce
Confidence 9999999887642211 3456666666555555543 1134557
Q ss_pred EEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 316 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 316 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
+..+.|++|+.+|+++... .|.+|-...-.+
T Consensus 307 v~~l~Wn~ds~iLAv~~~~-----~vqLWt~~NYHW 337 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLED-----RVQLWTRSNYHW 337 (928)
T ss_pred eeEEEECCCCCEEEEEecC-----CceEEEeeCCEE
Confidence 7889999999988887621 166676655443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00034 Score=68.82 Aligned_cols=281 Identities=17% Similarity=0.183 Sum_probs=154.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
+++..+ +++|. .+.+.+.+.+|+.+|....++..|.. .+.+..|--..+
T Consensus 109 Ssv~~~--~~~Il-----tgsYDg~~riWd~~Gk~~~~~~Ght~------------------------~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 109 SSVKGA--SKWIL-----TGSYDGTSRIWDLKGKSIKTIVGHTG------------------------PIKSVAWVIKNS 157 (423)
T ss_pred hhhccc--CceEE-----EeecCCeeEEEecCCceEEEEecCCc------------------------ceeeeEEEecCC
Confidence 444445 67776 34455679999999988888886533 455555532000
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccce-ecC--CCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCC--
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPEL-KLS--SSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGAN-- 210 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~-~l~--~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~-- 210 (776)
-...++.+ .+..|.+|-.+-++... .+. .+....+..++..+||.+++-.+ +..|-+|+.+......+-....
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 11223333 55566665555444331 111 13334477788889999887765 4567777733322221111000
Q ss_pred ------CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 211 ------GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 211 ------~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
........+--.-+.+.+.+.++.|++ ...++..+.|
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwD------------------------------------ 280 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWD------------------------------------ 280 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeeccc------------------------------------
Confidence 000011111112223334466788877 4334433332
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE----EEeccC
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI----LVEELD 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l----~~~~~~ 360 (776)
-.|.+||+.++....- ......+..+..+|..+.|+..+ .+..|.+||+.++.-..+ ..+.
T Consensus 281 HTIk~WDletg~~~~~---------~~~~ksl~~i~~~~~~~Ll~~gs----sdr~irl~DPR~~~gs~v~~s~~gH~-- 345 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKST---------LTTNKSLNCISYSPLSKLLASGS----SDRHIRLWDPRTGDGSVVSQSLIGHK-- 345 (423)
T ss_pred ceEEEEEeecccceee---------eecCcceeEeecccccceeeecC----CCCceeecCCCCCCCceeEEeeecch--
Confidence 4589999998875433 12234567789999888776554 466799999987754333 3332
Q ss_pred ceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCc--eeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGT--CLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~--~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.|+.. -.++| .+.+.|.|- -++ .+.+||.... ....|..++..+...- |+. +. .++++..+
T Consensus 346 nwVss-vkwsp--------~~~~~~~S~S~D~--t~klWDvRS~k~plydI~~h~DKvl~vd-W~~-~~-~IvSGGaD 409 (423)
T KOG0313|consen 346 NWVSS-VKWSP--------TNEFQLVSGSYDN--TVKLWDVRSTKAPLYDIAGHNDKVLSVD-WNE-GG-LIVSGGAD 409 (423)
T ss_pred hhhhh-eecCC--------CCceEEEEEecCC--eEEEEEeccCCCcceeeccCCceEEEEe-ccC-Cc-eEEeccCc
Confidence 36432 22333 233566553 466 7888886543 4667777776666655 543 22 44554444
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-06 Score=82.73 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHH-hCCc----EEEEECCCCC----CCCchhhhhhh-----hhcc---CC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGI----LVWKLDNRGT----ARRGLKFEASI-----KHNC---GR 616 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~----~v~~~d~rg~----g~~~~~~~~~~-----~~~~---~~ 616 (776)
....||+||..++.. .+..++..+. +.|. .++.++.-|. |.....-..++ .... ..
T Consensus 11 ~tPTifihG~~gt~~-------s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~ 83 (255)
T PF06028_consen 11 TTPTIFIHGYGGTAN-------SFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYK 83 (255)
T ss_dssp -EEEEEE--TTGGCC-------CCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHH
T ss_pred CCcEEEECCCCCChh-------HHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHH
Confidence 346688999776643 3455677776 5553 3444444432 11110000000 0000 01
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC------CCceEEEEEcCCCCCcccccccccccc---c
Q 004067 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDGYDTFYTEKY---M 687 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~---~ 687 (776)
....-+..++.+|.++..+ .++=++||||||..++.++..+ |.+-+.+.+.+|+-............. -
T Consensus 84 ~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~~ 161 (255)
T PF06028_consen 84 KQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNKN 161 (255)
T ss_dssp HHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CSTT
T ss_pred HHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhccc
Confidence 1345678888888888755 4999999999999999998874 333344444455443322111000000 0
Q ss_pred CCCCCCccchhcCChhhhhccC--CCcEEEEecC------CCCccChHHHHHHHHHHHHCCCCeEEEEecC--CCCCCCC
Q 004067 688 GLPSEDPVGYEYSSVMHHVHKM--KGKLLLVHGM------IDENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRR 757 (776)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~i--~~P~lii~G~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H~~~~ 757 (776)
+ |......|...-... -..+ ...+|-|.|. .|..||...+..+..-++......+-.++.| +.|+-.+
T Consensus 162 g-p~~~~~~y~~l~~~~-~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~Lh 239 (255)
T PF06028_consen 162 G-PKSMTPMYQDLLKNR-RKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLH 239 (255)
T ss_dssp --BSS--HHHHHHHHTH-GGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGG
T ss_pred C-CcccCHHHHHHHHHH-HhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCC
Confidence 1 222222222111110 1222 2579999998 7999999988888777766667777777765 5787533
Q ss_pred CCcHHHHHHHHHHHH
Q 004067 758 HRDRIYMEERIWEFI 772 (776)
Q Consensus 758 ~~~~~~~~~~~~~fl 772 (776)
....+.+.|.+||
T Consensus 240 --eN~~V~~~I~~FL 252 (255)
T PF06028_consen 240 --ENPQVDKLIIQFL 252 (255)
T ss_dssp --CCHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHh
Confidence 3457778888887
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.1e-05 Score=76.75 Aligned_cols=132 Identities=14% Similarity=-0.004 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHHcCCCCC--CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC--cccc----------cc---
Q 004067 618 DAEDQLTGAEWLIKQGLAKV--GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS--WDGY----------DT--- 680 (776)
Q Consensus 618 ~~~D~~~~i~~l~~~~~id~--~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~--~~~~----------~~--- 680 (776)
.+.|.+.|+.++.++..... -++.++|+|+||++|..++--.|-.+.+++-.++..- |+.. ..
T Consensus 162 qAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~ 241 (403)
T PF11144_consen 162 QAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGE 241 (403)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccc
Confidence 36788999999988733222 4899999999999999999888999999987665432 1110 00
Q ss_pred ------cccccccCCCCCCc---------cchh-----cCChhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 681 ------FYTEKYMGLPSEDP---------VGYE-----YSSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 681 ------~~~~~~~~~~~~~~---------~~~~-----~~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
.....+..+.|... +.+. ..+.+...++. ++-....|+..|+.+|+++-.++++.+++
T Consensus 242 ~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~ 321 (403)
T PF11144_consen 242 FFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKN 321 (403)
T ss_pred ccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence 00000111222110 0000 00111112222 24457789999999999999999999999
Q ss_pred CCCCeEEEEec
Q 004067 739 ARKPYEILIFP 749 (776)
Q Consensus 739 ~~~~~~~~~~~ 749 (776)
.|-+++++++.
T Consensus 322 lgfda~l~lIk 332 (403)
T PF11144_consen 322 LGFDATLHLIK 332 (403)
T ss_pred cCCCeEEEEec
Confidence 99999999984
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.6e-05 Score=74.85 Aligned_cols=149 Identities=21% Similarity=0.221 Sum_probs=90.2
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+.++++||||+.+||+...+ ....||.....+.....++ +..+..++|++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~--~~~~L~~~~~~~~~~~~~~--------------------------g~~l~~PS~d~- 75 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGD--GGRSLYVGPAGGPVRPVLT--------------------------GGSLTRPSWDP- 75 (253)
T ss_pred cccceEECCCCCeEEEEEEcC--CCCEEEEEcCCCcceeecc--------------------------CCccccccccC-
Confidence 458999999999999999322 2468999987655443333 23577899999
Q ss_pred CCCceEEEEeCCCcEE--EEeCCCCccc-eecCCCCCC-CccCceeCCCCCEEEEEE----CCcEEEEecC---CCceeE
Q 004067 136 SSKKKIIMVPLPDGIY--FQDLSCSKPE-LKLSSSSCS-PVIDPHLSSDGTMIAFVR----DCELHVLNLL---INEQRQ 204 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~--~~d~~~~~~~-~~l~~~~~~-~~~~~~~SpDg~~la~~~----~~~l~~~~l~---~g~~~~ 204 (776)
+|...++....... ..+..++... ..+...... .+..+++||||.++|++. ..+||+..+. +|..+.
T Consensus 76 --~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~ 153 (253)
T PF10647_consen 76 --DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR 153 (253)
T ss_pred --CCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce
Confidence 97766665433322 2232333332 123222211 578899999999999999 5678887654 332333
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
++.... +.......+..+.|++|++.++...
T Consensus 154 l~~~~~-----------~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 154 LTGPRR-----------VAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred eccceE-----------ecccccCcceeeeecCCCEEEEEeC
Confidence 322111 0001112255789999997554433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.4e-05 Score=75.74 Aligned_cols=183 Identities=16% Similarity=0.046 Sum_probs=124.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE-EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE-LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+....|+|++.++.-...++ ..+..||+++...+ -+..|. .-+..-+|+|
T Consensus 113 v~~~~f~~~d~t~l~s~sDd----~v~k~~d~s~a~v~~~l~~ht------------------------DYVR~g~~~~- 163 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDD----KVVKYWDLSTAYVQAELSGHT------------------------DYVRCGDISP- 163 (487)
T ss_pred eeEEEecccCCeEEEecCCC----ceEEEEEcCCcEEEEEecCCc------------------------ceeEeecccc-
Confidence 45778999998887554444 45888899888762 233333 2577889999
Q ss_pred CCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
-...|+++ .|+.|.+||......+ ..+-+.+.++..+-+-|.|..||....+++-+||+-+|....- .-....
T Consensus 164 --~~~hivvtGsYDg~vrl~DtR~~~~~-v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~-~~~~H~- 238 (487)
T KOG0310|consen 164 --ANDHIVVTGSYDGKVRLWDTRSLTSR-VVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT-SMFNHN- 238 (487)
T ss_pred --CCCeEEEecCCCceEEEEEeccCCce-eEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh-hhhccc-
Confidence 88888887 7888999998876443 3333344468889999999999999999999999996644321 111010
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
..+..+.+..||.+|+..+.| ..+.+||..
T Consensus 239 --------------KtVTcL~l~s~~~rLlS~sLD------------------------------------~~VKVfd~t 268 (487)
T KOG0310|consen 239 --------------KTVTCLRLASDSTRLLSGSLD------------------------------------RHVKVFDTT 268 (487)
T ss_pred --------------ceEEEEEeecCCceEeecccc------------------------------------cceEEEEcc
Confidence 114467788899988877654 235666643
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
+=+..-- ..-.+.+-+++.|||++.++...
T Consensus 269 ~~Kvv~s---------~~~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 269 NYKVVHS---------WKYPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred ceEEEEe---------eecccceeeEEecCCCceEEEec
Confidence 3332211 23345678899999999777765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-06 Score=86.34 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=105.8
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc-------eecCCCCCCCccCceeCCCCCEEEEEEC--CcEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE-------LKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHV 194 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~-------~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~ 194 (776)
..+.++.|.| +|.++|++. .++.|-+|.+..+... ..||.+- ..+..++|.|=...++.++. ..|-+
T Consensus 628 t~vtDl~WdP--FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~-eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 628 TLVTDLHWDP--FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG-EKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred ceeeecccCC--CChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc-ceEEEEEecchhhhHhhhhhccceeee
Confidence 4578999999 788999987 5677777766543222 0222222 24677888885444444433 35899
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
||+.++..+.-..+..+ .+.+++|||||++|+.+..|
T Consensus 705 WDl~~~~~~~~l~gHtd-----------------qIf~~AWSpdGr~~AtVcKD-------------------------- 741 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTD-----------------QIFGIAWSPDGRRIATVCKD-------------------------- 741 (1012)
T ss_pred eehhhhhhhheeccCcC-----------------ceeEEEECCCCcceeeeecC--------------------------
Confidence 99998865432222111 15689999999999988754
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|+||...+++.....-. ......-..+.|.=||++++.+.-......+|-+||+.+-....|
T Consensus 742 ----------g~~rVy~Prs~e~pv~Eg~------gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl 805 (1012)
T KOG1445|consen 742 ----------GTLRVYEPRSREQPVYEGK------GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPL 805 (1012)
T ss_pred ----------ceEEEeCCCCCCCccccCC------CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcc
Confidence 4578888877664332111 111234456889999997665544444456788888876554444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.4e-05 Score=77.33 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=75.0
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..++-++|||+|..+|- +.....|++|-... .+++..+. ...+.++........+.+...+....|+|
T Consensus 66 ~aVN~vRf~p~gelLAS-----g~D~g~v~lWk~~~---~~~~~~d~----e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLAS-----GGDGGEVFLWKQGD---VRIFDADT----EADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred ceeEEEEEcCCcCeeee-----cCCCceEEEEEecC---cCCccccc----hhhhCccceEEEEEecccccchhhhhccC
Confidence 34688999999999983 22235677777652 11110000 00111111111111122234677889999
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC 190 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~ 190 (776)
|+..+++. .++.+++||+..|... .........+...+|-|-+++++-.+..
T Consensus 134 ---d~~~l~s~s~dns~~l~Dv~~G~l~-~~~~dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 134 ---DSNFLVSGSVDNSVRLWDVHAGQLL-AILDDHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred ---CCceeeeeeccceEEEEEeccceeE-eeccccccccceeecchhhhhhhhhccC
Confidence 99999987 6778999999999988 4444334457889999999998877643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00013 Score=76.50 Aligned_cols=136 Identities=12% Similarity=0.121 Sum_probs=94.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc-eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK-QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+.+++|-|||..+.-... ..++++|+..|. .+.|..|++ -+..++||.
T Consensus 15 i~d~afkPDGsqL~lAAg------~rlliyD~ndG~llqtLKgHKD------------------------tVycVAys~- 63 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAG------SRLLVYDTSDGTLLQPLKGHKD------------------------TVYCVAYAK- 63 (1081)
T ss_pred hheeEECCCCceEEEecC------CEEEEEeCCCcccccccccccc------------------------eEEEEEEcc-
Confidence 478999999999986543 359999998665 466666554 588899999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCce
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||++++.. .+..+.+|+-.-...- +..++ ..+..+.|.|-...|+..+-++.-.|+.+...+..-...
T Consensus 64 --dGkrFASG~aDK~VI~W~~klEG~L-kYSH~--D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss------ 132 (1081)
T KOG1538|consen 64 --DGKRFASGSADKSVIIWTSKLEGIL-KYSHN--DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSS------ 132 (1081)
T ss_pred --CCceeccCCCceeEEEeccccccee-eeccC--CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhh------
Confidence 99999987 4455667764322222 33333 347889999999999988877777777665543221111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
.|....+|..||+.++..-.
T Consensus 133 -------------~R~~~CsWtnDGqylalG~~ 152 (1081)
T KOG1538|consen 133 -------------SRIICCSWTNDGQYLALGMF 152 (1081)
T ss_pred -------------eeEEEeeecCCCcEEEEecc
Confidence 12446789999999887654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00051 Score=68.29 Aligned_cols=105 Identities=9% Similarity=0.095 Sum_probs=73.0
Q ss_pred CCeeeEEEeecCCCceEEEEeC-CCcEEEEeCC--------C-----Cccc--eecCCCCCCCccCceeCCCCCEEEEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL-PDGIYFQDLS--------C-----SKPE--LKLSSSSCSPVIDPHLSSDGTMIAFVR 188 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~-~~~l~~~d~~--------~-----~~~~--~~l~~~~~~~~~~~~~SpDg~~la~~~ 188 (776)
..++...|+| +|..|+... ++.+++|-.. + .+.. ...-.+....+....|+||+..+++.+
T Consensus 66 ~aVN~vRf~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s 142 (434)
T KOG1009|consen 66 RAVNVVRFSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS 142 (434)
T ss_pred ceeEEEEEcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee
Confidence 4688899999 999999884 4567777544 3 1101 011111223478899999999999987
Q ss_pred C-CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 189 D-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 189 ~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
. +-+++||+..|+...+-.+... + +..++|.|-+++|+..+.++
T Consensus 143 ~dns~~l~Dv~~G~l~~~~~dh~~--y---------------vqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 143 VDNSVRLWDVHAGQLLAILDDHEH--Y---------------VQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ccceEEEEEeccceeEeecccccc--c---------------cceeecchhhhhhhhhccCc
Confidence 5 5589999999988766544332 1 34678999999988777655
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00041 Score=73.60 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=71.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc-eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK-QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+.++|||||+++|---. ...+.+.+|+++.-. ...+.+ +..++....|+|
T Consensus 81 ~t~vAfS~~GryvatGEc---G~~pa~kVw~la~h~vVAEfvd------------------------HKY~vtcvaFsp- 132 (1080)
T KOG1408|consen 81 LTCVAFSQNGRYVATGEC---GRTPASKVWSLAFHGVVAEFVD------------------------HKYNVTCVAFSP- 132 (1080)
T ss_pred eeEEEEcCCCcEEEeccc---CCCccceeeeeccccchhhhhh------------------------ccccceeeeecC-
Confidence 478999999999983211 124678888887543 111222 235788999999
Q ss_pred CCCceEEEEeCCCc-----EE--EEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc
Q 004067 136 SSKKKIIMVPLPDG-----IY--FQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE 201 (776)
Q Consensus 136 ~~dg~~l~~~~~~~-----l~--~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~ 201 (776)
.+++|+...... ++ +.++.+...+ +. ..+....||.||.+.+-..+..|-.|.++.+.
T Consensus 133 --~~kyvvSVGsQHDMIVnv~dWr~N~~~asnk--is----s~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~ 197 (1080)
T KOG1408|consen 133 --GNKYVVSVGSQHDMIVNVNDWRVNSSGASNK--IS----SVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQS 197 (1080)
T ss_pred --CCcEEEeeccccceEEEhhhhhhcccccccc--cc----eeEEEEEEccCCceeeeeeeeeEEEEEeeccc
Confidence 999988652211 22 2233332222 21 24677899999999888888888888888776
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00014 Score=74.08 Aligned_cols=221 Identities=15% Similarity=0.107 Sum_probs=131.3
Q ss_pred CCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC
Q 004067 520 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 599 (776)
Q Consensus 520 ~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~ 599 (776)
.++..|.+++.. ++.+ .-.+|+|.... ++..+||++||...+. .|......+...|.+.|++++++-.+.-
T Consensus 58 ~lp~~e~~~L~~-~~~~-flaL~~~~~~~---~~~G~vIilp~~g~~~----d~p~~i~~LR~~L~~~GW~Tlsit~P~~ 128 (310)
T PF12048_consen 58 YLPADEVQWLQA-GEER-FLALWRPANSA---KPQGAVIILPDWGEHP----DWPGLIAPLRRELPDHGWATLSITLPDP 128 (310)
T ss_pred hCCHhhcEEeec-CCEE-EEEEEecccCC---CCceEEEEecCCCCCC----CcHhHHHHHHHHhhhcCceEEEecCCCc
Confidence 354566677776 4443 44455665432 5678999999965543 3544555667788999999999987751
Q ss_pred CCC-chhh---------------hh-------------hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHH
Q 004067 600 ARR-GLKF---------------EA-------------SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGY 650 (776)
Q Consensus 600 g~~-~~~~---------------~~-------------~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~ 650 (776)
-.. ...+ .. ............-+.+++.++.+++ ..+|+|+||+.|++
T Consensus 129 ~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~ 205 (310)
T PF12048_consen 129 APPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAG 205 (310)
T ss_pred ccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHH
Confidence 100 0000 00 0000000011333556666666654 24599999999999
Q ss_pred HHHHHHhhCCC-ceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHH
Q 004067 651 LSAITLARFPD-VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 729 (776)
Q Consensus 651 ~a~~~a~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 729 (776)
+++.+....+. .+.+.|++++...-. .........+.+++.|+|=|+... .......+
T Consensus 206 ~~~~~la~~~~~~~daLV~I~a~~p~~--------------------~~n~~l~~~la~l~iPvLDi~~~~-~~~~~~~a 264 (310)
T PF12048_consen 206 WAARYLAEKPPPMPDALVLINAYWPQP--------------------DRNPALAEQLAQLKIPVLDIYSAD-NPASQQTA 264 (310)
T ss_pred HHHHHHhcCCCcccCeEEEEeCCCCcc--------------------hhhhhHHHHhhccCCCEEEEecCC-ChHHHHHH
Confidence 99999998754 478888887753211 001233456788899999999877 32222222
Q ss_pred HHHHHHHHH-CCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 730 ARLINALVA-ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 730 ~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..=....++ ....++.+.+++..|.... ....+.++|..||.++
T Consensus 265 ~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 265 KQRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 221222222 2346777777777775422 2233889999999876
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00021 Score=65.68 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=120.9
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
|+++...+.|-|..+++ .+.+...+++||.++|+. |++-.| ...++...|
T Consensus 59 G~EVlD~~~s~Dnskf~-----s~GgDk~v~vwDV~TGkv~Rr~rgH------------------------~aqVNtV~f 109 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFA-----SCGGDKAVQVWDVNTGKVDRRFRGH------------------------LAQVNTVRF 109 (307)
T ss_pred Cceeeeccccccccccc-----cCCCCceEEEEEcccCeeeeecccc------------------------cceeeEEEe
Confidence 46678888999999998 444467899999999987 333332 346888899
Q ss_pred eecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCC--CccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCC
Q 004067 133 VKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCS--PVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 133 sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~--~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~ 209 (776)
.. +..-++.. -+..+.+||-.+.... ++...... .+..+..+ +...++=..++.+..+|+..|+.. .+-
T Consensus 110 Ne---esSVv~SgsfD~s~r~wDCRS~s~e-PiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~---sDy 181 (307)
T KOG0316|consen 110 NE---ESSVVASGSFDSSVRLWDCRSRSFE-PIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLS---SDY 181 (307)
T ss_pred cC---cceEEEeccccceeEEEEcccCCCC-ccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecceee---hhh
Confidence 87 66555443 5678999998776555 32221111 13333332 222222233566777777666532 211
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
- |.+ +..+.+|+||+-.+..+.+ ..|++
T Consensus 182 ~------g~p----------it~vs~s~d~nc~La~~l~------------------------------------stlrL 209 (307)
T KOG0316|consen 182 F------GHP----------ITSVSFSKDGNCSLASSLD------------------------------------STLRL 209 (307)
T ss_pred c------CCc----------ceeEEecCCCCEEEEeecc------------------------------------ceeee
Confidence 1 111 5678899999988766643 45788
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
.|-++|++-..-.. -....+-.+..++.....++..+ .++.+|.||+..+..-
T Consensus 210 lDk~tGklL~sYkG------hkn~eykldc~l~qsdthV~sgS----EDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 210 LDKETGKLLKSYKG------HKNMEYKLDCCLNQSDTHVFSGS----EDGKVYFWDLVDETQI 262 (307)
T ss_pred cccchhHHHHHhcc------cccceeeeeeeecccceeEEecc----CCceEEEEEeccceee
Confidence 89888875433111 12223444556665554554443 5667899998765543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00079 Score=80.39 Aligned_cols=238 Identities=12% Similarity=0.087 Sum_probs=132.2
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.|..+++++||..|++.... ...|.++|+.++..+.+......+. .... +... .......-..+.++|
T Consensus 625 ~P~GIavd~~gn~LYVaDt~----n~~Ir~id~~~~~V~tlag~G~~g~---~~~g-g~~~---~~~~ln~P~gVa~dp- 692 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTE----NHALREIDFVNETVRTLAGNGTKGS---DYQG-GKKG---TSQVLNSPWDVCFEP- 692 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCC----CceEEEEecCCCEEEEEeccCcccC---CCCC-Chhh---hHhhcCCCeEEEEec-
Confidence 36888899998877654432 2468999998888776653211000 0000 0000 000012234678898
Q ss_pred CCCceEEEEe--CCCcEEEEeCCCCccceecCCC--------------CCCCccCceeCCCCCEEEEEEC--CcEEEEec
Q 004067 136 SSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSS--------------SCSPVIDPHLSSDGTMIAFVRD--CELHVLNL 197 (776)
Q Consensus 136 ~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~--------------~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l 197 (776)
++..|+++ .+..|+++|..++... .+... .......++++|||+.|.+... +.|.++++
T Consensus 693 --~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~ 769 (1057)
T PLN02919 693 --VNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDL 769 (1057)
T ss_pred --CCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 88888877 4567999998877654 32110 0011345789999997655543 57999999
Q ss_pred CCCceeEEeeCCCCCceecCCccc------ceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcc
Q 004067 198 LINEQRQLTHGANGNTVTHGLAEY------IAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE 271 (776)
Q Consensus 198 ~~g~~~~lt~~~~~~~~~~~~~~~------~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (776)
+++..+.+...... .......+ ..+..+....+++++|||+ | |+.....
T Consensus 770 ~tg~~~~~~gg~~~--~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-L-YVADs~N--------------------- 824 (1057)
T PLN02919 770 KTGGSRLLAGGDPT--FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-I-YVADSYN--------------------- 824 (1057)
T ss_pred CCCcEEEEEecccc--cCcccccccCCCCchhhhhccCCceeeEeCCCc-E-EEEECCC---------------------
Confidence 98876544321100 00000000 0001112234778899987 4 4442111
Q ss_pred eecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCC------CCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEE
Q 004067 272 DHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT------DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 272 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 345 (776)
..|.+||.+++....+.-. |.+ ...........+++++||+ ++++ +. .+..|.++|
T Consensus 825 -------------~rIrviD~~tg~v~tiaG~-G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa-Dt--~Nn~Irvid 886 (1057)
T PLN02919 825 -------------HKIKKLDPATKRVTTLAGT-GKAGFKDGKALKAQLSEPAGLALGENGR-LFVA-DT--NNSLIRYLD 886 (1057)
T ss_pred -------------CEEEEEECCCCeEEEEecc-CCcCCCCCcccccccCCceEEEEeCCCC-EEEE-EC--CCCEEEEEE
Confidence 4578899988887665321 110 0011122445789999997 3333 32 345699999
Q ss_pred CCCCce
Q 004067 346 IKTGQR 351 (776)
Q Consensus 346 ~~~g~~ 351 (776)
+++++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 999876
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00098 Score=70.62 Aligned_cols=227 Identities=15% Similarity=0.085 Sum_probs=141.1
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc-eecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~ 202 (776)
.++.++++|. ++++||.. .++.|=+|++..+--. ..+..++...+....|++.|+..-.-.++.|-.||+.+++.
T Consensus 26 s~I~slA~s~---kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 26 SEIVSLAYSH---KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred cceEEEEEec---cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence 4677889998 99999988 6788999999886433 24555555568899999655543333456899999998876
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+.--... |.+ +.+++.+|-++.++....+
T Consensus 103 ~~~~d~~-------gg~----------IWsiai~p~~~~l~Igcdd---------------------------------- 131 (691)
T KOG2048|consen 103 KYNIDSN-------GGA----------IWSIAINPENTILAIGCDD---------------------------------- 131 (691)
T ss_pred eEEecCC-------Ccc----------eeEEEeCCccceEEeecCC----------------------------------
Confidence 5432211 122 3356677888777765433
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc---
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL--- 359 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--- 359 (776)
..++.++...+++.--.. +......+..++|.|+|..|+..+ -++-|..||..++..-.+..-..
T Consensus 132 --Gvl~~~s~~p~~I~~~r~------l~rq~sRvLslsw~~~~~~i~~Gs----~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 132 --GVLYDFSIGPDKITYKRS------LMRQKSRVLSLSWNPTGTKIAGGS----IDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred --ceEEEEecCCceEEEEee------cccccceEEEEEecCCccEEEecc----cCceEEEEEcCCCceEEEeeeccccc
Confidence 124555555554432211 123346788999999998887766 46679999998877544322111
Q ss_pred ------CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEEEEE
Q 004067 360 ------DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 360 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
-.|... ...++.+...+..| .+-.||...+..-+ ..-++.+|..+. .++++..++..+
T Consensus 200 ~k~~~~iVWSv~------------~Lrd~tI~sgDS~G--~V~FWd~~~gTLiqS~~~h~adVl~La-v~~~~d~vfsaG 264 (691)
T KOG2048|consen 200 SKREPTIVWSVL------------FLRDSTIASGDSAG--TVTFWDSIFGTLIQSHSCHDADVLALA-VADNEDRVFSAG 264 (691)
T ss_pred ccCCceEEEEEE------------EeecCcEEEecCCc--eEEEEcccCcchhhhhhhhhcceeEEE-EcCCCCeEEEcc
Confidence 144322 11233455566677 89999987765433 333455566554 666666544443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-05 Score=81.77 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=100.0
Q ss_pred CcCCCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 54 YVAPTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 54 ~~~~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
|..++.+.|.| |-++||...+.. .-+||.+...+... ..+..+. -| ..+...|.+..|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg---~i~lWr~~a~gl~e-~~~tPe~------~l-----------t~h~eKI~slRf 685 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDG---QINLWRLTANGLPE-NEMTPEK------IL-----------TIHGEKITSLRF 685 (1012)
T ss_pred CceeeecccCCCChHHeeecccCc---eEEEEEeccCCCCc-ccCCcce------ee-----------ecccceEEEEEe
Confidence 44568899999 889999655432 23555555554432 1111000 00 112356888999
Q ss_pred eecCCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCC
Q 004067 133 VKTSSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 133 sp~~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~ 210 (776)
.|.-. ..|+. ..+..|-+||+.+++....|..+.. .+..++|||||+++|-+. ++.|++++...++...- ....
T Consensus 686 HPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-Eg~g 761 (1012)
T KOG1445|consen 686 HPLAA--DVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-EGKG 761 (1012)
T ss_pred cchhh--hHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-cCCC
Confidence 98111 11121 2678899999999988866665554 489999999999999986 56899999987765432 2111
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCC
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSS 250 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 250 (776)
. .| .|-..+.|.=||+.|+....+..
T Consensus 762 p----vg----------tRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 762 P----VG----------TRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred C----cc----------CcceeEEEEecCcEEEEeccccc
Confidence 0 00 12346789999999888776543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.2e-05 Score=80.69 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=124.7
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeec-CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFS-PPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+.+.+..|+=|. .+|+.... +.|-++|...|-.+.-+. .+. +...+...+...
T Consensus 450 ~~~av~vs~CGN-F~~IG~S~----G~Id~fNmQSGi~r~sf~~~~a---------------------h~~~V~gla~D~ 503 (910)
T KOG1539|consen 450 NATAVCVSFCGN-FVFIGYSK----GTIDRFNMQSGIHRKSFGDSPA---------------------HKGEVTGLAVDG 503 (910)
T ss_pred ceEEEEEeccCc-eEEEeccC----CeEEEEEcccCeeecccccCcc---------------------ccCceeEEEecC
Confidence 346777788887 45554444 469999999887654441 111 123466665554
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
-++.++.+ .+|.+..||..++.....+.-+. .+..+..+.....+|...+ ..|.++|..+-.+.+...+..
T Consensus 504 ---~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~--~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-- 576 (910)
T KOG1539|consen 504 ---TNRLLVSAGADGILKFWDFKKKVLKKSLRLGS--SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-- 576 (910)
T ss_pred ---CCceEEEccCcceEEEEecCCcceeeeeccCC--CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc--
Confidence 44445544 67889999998877552332222 2444555655555555543 368888887765543322211
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
.++.++.||||||+|+.++.| ..|++||+
T Consensus 577 ---------------nritd~~FS~DgrWlisasmD------------------------------------~tIr~wDl 605 (910)
T KOG1539|consen 577 ---------------NRITDMTFSPDGRWLISASMD------------------------------------STIRTWDL 605 (910)
T ss_pred ---------------cceeeeEeCCCCcEEEEeecC------------------------------------CcEEEEec
Confidence 126689999999999988765 45899999
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
-++...-. ...+.....++|||+|.+|+.++. +...||+|.-
T Consensus 606 pt~~lID~---------~~vd~~~~sls~SPngD~LAT~Hv---d~~gIylWsN 647 (910)
T KOG1539|consen 606 PTGTLIDG---------LLVDSPCTSLSFSPNGDFLATVHV---DQNGIYLWSN 647 (910)
T ss_pred cCcceeee---------EecCCcceeeEECCCCCEEEEEEe---cCceEEEEEc
Confidence 99875432 223345678999999999888764 3345899863
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0062 Score=61.00 Aligned_cols=273 Identities=12% Similarity=0.018 Sum_probs=136.2
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe-----------CCCc
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-----------LPDG 149 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-----------~~~~ 149 (776)
..+|++|.+.++..-.+. ..-...+..|| ||+.++.. +..-
T Consensus 17 ~rv~viD~d~~k~lGmi~-------------------------~g~~~~~~~sp---dgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID-------------------------TGFLGNVALSP---DGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp EEEEEEETTTTEEEEEEE-------------------------EESSEEEEE-T---TSSEEEEEEEEEEETTEEEEEEE
T ss_pred ceEEEEECCCCcEEEEee-------------------------cccCCceeECC---CCCEEEEEEEEEeccccccceeE
Confidence 479999998887643332 01123567888 99999975 1223
Q ss_pred EEEEeCCCCccce--ecCCCC----CCCccCceeCCCCCEEEEEEC---CcEEEEecCCCceeEEeeCCCCCceecCCcc
Q 004067 150 IYFQDLSCSKPEL--KLSSSS----CSPVIDPHLSSDGTMIAFVRD---CELHVLNLLINEQRQLTHGANGNTVTHGLAE 220 (776)
Q Consensus 150 l~~~d~~~~~~~~--~l~~~~----~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~ 220 (776)
|-+||..+=..+. .|...+ .......++|.||+.+++..- .-+-++|++.++...-...+....++.
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP---- 144 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYP---- 144 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEE----
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEe----
Confidence 6788988764442 333221 112456799999997655432 359999999988766555554321111
Q ss_pred cceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEE
Q 004067 221 YIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM 300 (776)
Q Consensus 221 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l 300 (776)
+.++ .......|.+ ..-..+|.+++...+.
T Consensus 145 --------------~~~~--~F~~lC~DGs----------------------------------l~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 145 --------------SGNR--GFSMLCGDGS----------------------------------LLTVTLDADGKEAQKS 174 (342)
T ss_dssp --------------EETT--EEEEEETTSC----------------------------------EEEEEETSTSSEEEEE
T ss_pred --------------cCCC--ceEEEecCCc----------------------------------eEEEEECCCCCEeEee
Confidence 2222 1222221111 1112222222222111
Q ss_pred EcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCc-cc-
Q 004067 301 DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGV-TK- 378 (776)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~- 378 (776)
+. ......+.....+.++.++..++|.+ -.+.||..|+.+...+..-.-.-..-.+....|.|.++.+ +.
T Consensus 175 t~----~F~~~~dp~f~~~~~~~~~~~~~F~S----y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 175 TK----VFDPDDDPLFEHPAYSRDGGRLYFVS----YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH 246 (342)
T ss_dssp EE----ESSTTTS-B-S--EEETTTTEEEEEB----TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred cc----ccCCCCcccccccceECCCCeEEEEe----cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence 10 00112223444667777665666666 4556899998777654432211000001123456766652 22
Q ss_pred -cCCeEEEEecc-------CCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 379 -YSGGFIWASEK-------TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 379 -~~~~~~~~s~~-------~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
..+.+|..-.. ++...||.+|+.+++ .+++.-. ..+.++ ..|.|.+=++|..+... ..|+..+..
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si-~Vsqd~~P~L~~~~~~~---~~l~v~D~~ 320 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSI-AVSQDDKPLLYALSAGD---GTLDVYDAA 320 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEE-EEESSSS-EEEEEETTT---TEEEEEETT
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceE-EEccCCCcEEEEEcCCC---CeEEEEeCc
Confidence 23344443322 345799999998876 3444432 223344 37888876666544322 357777764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0012 Score=68.43 Aligned_cols=284 Identities=11% Similarity=0.082 Sum_probs=158.8
Q ss_pred eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----------CcEEEE
Q 004067 127 VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----------CELHVL 195 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----------~~l~~~ 195 (776)
...+.+|+ +|+.+++..+..+.+.+...++. .++.... ....+.|||-|.+|.--.. -++-++
T Consensus 37 ~~v~~~S~---~G~lfA~~~~~~v~i~~~~~~~~--~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 37 CNVFAYSN---NGRLFAYSDNQVVKVFEIATLKV--VLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred ceeEEEcC---CCcEEEEEcCCeEEEEEccCCcE--EEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 45677888 99999999999999999888864 3444333 4788999999998764431 247777
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
+++++..+--..... -.+| .+.||+|....++...
T Consensus 111 ~vet~~~~s~~q~k~-------Q~~W----------~~qfs~dEsl~arlv~---------------------------- 145 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKM-------QNGW----------VPQFSIDESLAARLVS---------------------------- 145 (566)
T ss_pred eeccceehhheehhh-------hcCc----------ccccccchhhhhhhhc----------------------------
Confidence 777743221111110 0113 3568888875554332
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe---EEEEEEeecCceEEEEEEECC-CCce
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI---LTAQVLNRSQTKLKVLKFDIK-TGQR 351 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~---~l~~~~~~~~~~~~l~~~d~~-~g~~ 351 (776)
.+++.+++.+-+...- .-+...+..+.+||-+. +.+++-........+.+|-.- .+..
T Consensus 146 ---------nev~f~~~~~f~~~~~---------kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 146 ---------NEVQFYDLGSFKTIQH---------KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred ---------ceEEEEecCCccceee---------eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 4567777776332221 11234677888999754 333443333333334444332 1222
Q ss_pred EEEEEeccCceeecccccccCCCCcccc--CCeEE-E-EeccC-------CceEEEEEeCCCcee-eccccCCeEEEEEE
Q 004067 352 KVILVEELDSWVNLHDCFTPLDKGVTKY--SGGFI-W-ASEKT-------GFRHLYLHDINGTCL-GPITEGDWMVEQIV 419 (776)
Q Consensus 352 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~s~~~-------g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~ 419 (776)
..+.. .. + |.-..-.+.|. +..++ . +++-+ |.+.||+++.+|... .+|+. ...|-.+.
T Consensus 208 ~~~a~-ks--F------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~ 277 (566)
T KOG2315|consen 208 QPVAN-KS--F------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVT 277 (566)
T ss_pred chhhh-cc--c------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEE
Confidence 22211 10 0 00000001222 22232 2 23222 457999999885443 34443 33444554
Q ss_pred eecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 420 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
|+++|+...+.... .|....||.++ |+ +.--...+.-+.+-|+|.|+.|++.--+. -++.+-+||..+
T Consensus 278 -W~~s~~EF~VvyGf-MPAkvtifnlr----~~-----~v~df~egpRN~~~fnp~g~ii~lAGFGN-L~G~mEvwDv~n 345 (566)
T KOG2315|consen 278 -WSPSGREFAVVYGF-MPAKVTIFNLR----GK-----PVFDFPEGPRNTAFFNPHGNIILLAGFGN-LPGDMEVWDVPN 345 (566)
T ss_pred -ECCCCCEEEEEEec-ccceEEEEcCC----CC-----EeEeCCCCCccceEECCCCCEEEEeecCC-CCCceEEEeccc
Confidence 99999886666543 45445665554 32 33333333346789999999988875554 567888899866
Q ss_pred Cc
Q 004067 500 GS 501 (776)
Q Consensus 500 ~~ 501 (776)
-+
T Consensus 346 ~K 347 (566)
T KOG2315|consen 346 RK 347 (566)
T ss_pred hh
Confidence 43
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0025 Score=61.05 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=56.3
Q ss_pred CCeeeEEEeecCCCceEEE--EeCCCcEEEEeCCCC-ccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIM--VPLPDGIYFQDLSCS-KPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~--~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g 200 (776)
..|..++||| ....++ -+.++++.+|+++.. ....+......+.+....||-||.+++... +.++-+|||++|
T Consensus 28 DsIS~l~FSP---~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 28 DSISALAFSP---QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cchheeEecc---ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4678899999 555444 347899999998763 333111111223578899999997654443 568999999999
Q ss_pred ceeEEeeCC
Q 004067 201 EQRQLTHGA 209 (776)
Q Consensus 201 ~~~~lt~~~ 209 (776)
+..++-...
T Consensus 105 Q~~~v~~Hd 113 (347)
T KOG0647|consen 105 QVSQVAAHD 113 (347)
T ss_pred Ceeeeeecc
Confidence 998886543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0054 Score=67.26 Aligned_cols=312 Identities=13% Similarity=0.056 Sum_probs=169.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
++.+.|.|++-.. ++.++ .-.|.+|+-++.+. -+|..| -.-+....|.+
T Consensus 54 VRgv~FH~~qplF--VSGGD---DykIkVWnYk~rrclftL~GH------------------------lDYVRt~~FHh- 103 (1202)
T KOG0292|consen 54 VRGVDFHPTQPLF--VSGGD---DYKIKVWNYKTRRCLFTLLGH------------------------LDYVRTVFFHH- 103 (1202)
T ss_pred cceeeecCCCCeE--EecCC---ccEEEEEecccceehhhhccc------------------------cceeEEeeccC-
Confidence 5889999998754 44433 35788888876543 223322 13467788888
Q ss_pred CCCceEEEEeC-CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCC-
Q 004067 136 SSKKKIIMVPL-PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGN- 212 (776)
Q Consensus 136 ~~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~- 212 (776)
.--+|+... |.+|.+|+-.+++....||.+.. .+...+|.|....|+..+-. .|.+||..+=..+.....+-.+
T Consensus 104 --eyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~ 180 (1202)
T KOG0292|consen 104 --EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ 180 (1202)
T ss_pred --CCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhh
Confidence 777888875 45699999999998856665543 58889999988888887754 5899998754433332221000
Q ss_pred --------cee---cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 213 --------TVT---HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 213 --------~~~---~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
... ..+..++-+.+-..++..+|.|----|+..+ |+
T Consensus 181 ~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~-DD-------------------------------- 227 (1202)
T KOG0292|consen 181 MRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA-DD-------------------------------- 227 (1202)
T ss_pred hhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC-Cc--------------------------------
Confidence 000 0111111111112233444555443333222 22
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELD 360 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~ 360 (776)
.++.+|-.+..+...+++= .++.+.+..+-|.|.-..|+..+ .+..|.+||++....-... .+++.
T Consensus 228 ---RqVKlWrmnetKaWEvDtc------rgH~nnVssvlfhp~q~lIlSns----EDksirVwDm~kRt~v~tfrrendR 294 (1202)
T KOG0292|consen 228 ---RQVKLWRMNETKAWEVDTC------RGHYNNVSSVLFHPHQDLILSNS----EDKSIRVWDMTKRTSVQTFRRENDR 294 (1202)
T ss_pred ---ceeeEEEeccccceeehhh------hcccCCcceEEecCccceeEecC----CCccEEEEecccccceeeeeccCCe
Confidence 3345555544444444432 57778889999999766665544 4667999999765543333 23333
Q ss_pred ceeec-ccccccCCCCccccCCeEEEEeccC-------C-------ceEEEEEeCCCceee---ccccCC---eEEEEEE
Q 004067 361 SWVNL-HDCFTPLDKGVTKYSGGFIWASEKT-------G-------FRHLYLHDINGTCLG---PITEGD---WMVEQIV 419 (776)
Q Consensus 361 ~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~-------g-------~~~l~~~~~~g~~~~---~lt~~~---~~~~~~~ 419 (776)
-|... .+...-. ....|+|=++|--++. + ...|+.+|+.+.+-. +|-... ..+.+.
T Consensus 295 FW~laahP~lNLf--AAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sm- 371 (1202)
T KOG0292|consen 295 FWILAAHPELNLF--AAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSL- 371 (1202)
T ss_pred EEEEEecCCccee--eeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCccee-
Confidence 44322 1111000 0122333344433321 1 136667776654322 222221 223333
Q ss_pred eecCCCcEEEEEEccCCCceeeEEEEEeCCCC
Q 004067 420 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDW 451 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g 451 (776)
+++|..+.++..++.++ ....|+.+.-+.+|
T Consensus 372 sYNpae~~vlics~~~n-~~y~L~~ipk~~~~ 402 (1202)
T KOG0292|consen 372 SYNPAENAVLICSNLDN-GEYELVQIPKDSDG 402 (1202)
T ss_pred eeccccCeEEEEeccCC-CeEEEEEecCcccc
Confidence 47888777777765544 34678877653333
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00099 Score=65.53 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=95.0
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCC--ccCceeCCCCCEEEEEEC---CcEEEEecCCC
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSP--VIDPHLSSDGTMIAFVRD---CELHVLNLLIN 200 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~--~~~~~~SpDg~~la~~~~---~~l~~~~l~~g 200 (776)
.+.++.. +-++|++....+||++|+..=+..-.+...+... .-...+++++-+|||-.. ++|+++|+.+=
T Consensus 89 ~IL~Vrm-----Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 89 SILAVRM-----NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred ceEEEEE-----ccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 4555555 4577888877889999998755431232221111 334455556669999864 58999998764
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+..-...-..+ ....++|||||..||.++..+
T Consensus 164 ~~v~~I~aH~~-----------------~lAalafs~~G~llATASeKG------------------------------- 195 (391)
T KOG2110|consen 164 QPVNTINAHKG-----------------PLAALAFSPDGTLLATASEKG------------------------------- 195 (391)
T ss_pred eeeeEEEecCC-----------------ceeEEEECCCCCEEEEeccCc-------------------------------
Confidence 43322222211 145789999999999877432
Q ss_pred CCCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC
Q 004067 281 SNVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
.-|+|+.+.+|+. ..+.-. .. ...++.++||||+++|..+++. ..|.++-++
T Consensus 196 ----TVIRVf~v~~G~kl~eFRRG------~~-~~~IySL~Fs~ds~~L~~sS~T----eTVHiFKL~ 248 (391)
T KOG2110|consen 196 ----TVIRVFSVPEGQKLYEFRRG------TY-PVSIYSLSFSPDSQFLAASSNT----ETVHIFKLE 248 (391)
T ss_pred ----eEEEEEEcCCccEeeeeeCC------ce-eeEEEEEEECCCCCeEEEecCC----CeEEEEEec
Confidence 3477777776653 333221 11 3568899999999987776643 334444443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00093 Score=65.73 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=82.3
Q ss_pred CCeeeEEEeecCCCceEEEEe---CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC--cEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP---LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~---~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~ 199 (776)
.|+.+++.++ .+.+|+|. ..++|+++|+.+-+....+..+++ .+..++|||||..||-.++. -|.++.+.+
T Consensus 130 ~gl~AlS~n~---~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 130 KGLCALSPNN---ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPE 205 (391)
T ss_pred cceEeeccCC---CCceEEecCCCCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCC
Confidence 4677777777 88899997 557899999988776645555554 48889999999999999875 377778877
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQG 261 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 261 (776)
|+...-...+. .... +.+++||||++.|+..+ +.+.++.+.+....
T Consensus 206 G~kl~eFRRG~---~~~~------------IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 206 GQKLYEFRRGT---YPVS------------IYSLSFSPDSQFLAASS-NTETVHIFKLEKVS 251 (391)
T ss_pred ccEeeeeeCCc---eeeE------------EEEEEECCCCCeEEEec-CCCeEEEEEecccc
Confidence 76533222221 1221 44789999999887655 55566666665443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0065 Score=58.53 Aligned_cols=81 Identities=14% Similarity=0.267 Sum_probs=59.5
Q ss_pred CCeeeEEEeecCCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee
Q 004067 125 LGVTRYEWVKTSSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR 203 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~ 203 (776)
.+|.++.|+| .+..|+. ..++.|-++|+...+.++.+... ..+..-.|.++.+.+.-..+++|.++|+.+++..
T Consensus 14 d~IS~v~f~~---~~~~LLvssWDgslrlYdv~~~~l~~~~~~~--~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 14 DGISSVKFSP---SSSDLLVSSWDGSLRLYDVPANSLKLKFKHG--APLLDCAFADESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hceeeEEEcC---cCCcEEEEeccCcEEEEeccchhhhhheecC--CceeeeeccCCceEEEeccCceEEEEEecCCcce
Confidence 4788999997 6666655 48999999999988777334332 2477788888766555556789999999999988
Q ss_pred EEeeCCC
Q 004067 204 QLTHGAN 210 (776)
Q Consensus 204 ~lt~~~~ 210 (776)
++-....
T Consensus 89 ~igth~~ 95 (323)
T KOG1036|consen 89 QIGTHDE 95 (323)
T ss_pred eeccCCC
Confidence 8755443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0057 Score=55.86 Aligned_cols=168 Identities=17% Similarity=0.233 Sum_probs=98.0
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce----EEEEEeccC----ceeecccccccCCCCccccCC
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR----KVILVEELD----SWVNLHDCFTPLDKGVTKYSG 381 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 381 (776)
..+.+.++..+|||+|+.|+..+|.. .-.+..++.++... -.+.-+.+. .+.+. ...+
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk--~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------~~s~ 151 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDK--TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------PESG 151 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCc--eEEEEecccccccccCcceeeeecCCceeeeEEecC------------CCcC
Confidence 34667899999999999887665322 22333344333211 111111111 22211 1134
Q ss_pred eEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCcccccee
Q 004067 382 GFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK 460 (776)
Q Consensus 382 ~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 460 (776)
+-+.+|...|.-+||+.|-..| ....+..+...+..+..|+ ..++.+.+.+.+ +..|.+..+. -+..
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn---~~m~~sgsqdkt--irfwdlrv~~-------~v~~ 219 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN---GAMFASGSQDKT--IRFWDLRVNS-------CVNT 219 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec---CcEEEccCCCce--EEEEeeeccc-------eeee
Confidence 4566677778889999996544 4566777777777776664 335666555544 7888887631 2222
Q ss_pred ecCC---C-----CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 461 LTNG---K-----GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 461 l~~~---~-----~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
|.+. . .+..+.+.|.|+-|+..... ..-+++|...|..++...
T Consensus 220 l~~~~~~~glessavaav~vdpsgrll~sg~~d----ssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD----SSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred ccCcccCCCcccceeEEEEECCCcceeeeccCC----CceEEEEeeCCceeeeeC
Confidence 2211 1 24567999999988766543 236677887887666554
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0038 Score=60.05 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=80.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+++++|||.++.|.-.+ ++| .|.+++....+.++...+. ..+..-.|.+
T Consensus 16 IS~v~f~~~~~~LLvss-WDg----slrlYdv~~~~l~~~~~~~------------------------~plL~c~F~d-- 64 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSS-WDG----SLRLYDVPANSLKLKFKHG------------------------APLLDCAFAD-- 64 (323)
T ss_pred eeeEEEcCcCCcEEEEe-ccC----cEEEEeccchhhhhheecC------------------------CceeeeeccC--
Confidence 48999999999887544 554 4889998888776666543 3567778887
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEECCcEEEEecCC
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVRDCELHVLNLLI 199 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~~~l~~~~l~~ 199 (776)
+.+-+.-..++.|.++|+.+++.. .+-.+... +..+.+++ +|..|+=..+..|-+||.-.
T Consensus 65 -~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~-i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 65 -ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEG-IRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred -CceEEEeccCceEEEEEecCCcce-eeccCCCc-eEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 666555568999999999999988 66655554 77888887 55555555577788888765
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0009 Score=67.60 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=84.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
.+|.|-|+++.|.|..-.. ..|+.+++++|+.+...... .+.....--
T Consensus 28 EgP~w~~~~~~L~w~DI~~----~~i~r~~~~~g~~~~~~~p~-------------------------~~~~~~~~d--- 75 (307)
T COG3386 28 EGPVWDPDRGALLWVDILG----GRIHRLDPETGKKRVFPSPG-------------------------GFSSGALID--- 75 (307)
T ss_pred cCccCcCCCCEEEEEeCCC----CeEEEecCCcCceEEEECCC-------------------------Ccccceeec---
Confidence 6888999999999886544 47999999988766655321 222222222
Q ss_pred CceEEEEeCCCcEEEEeCCCCcc-ceecCCCCC----CCccCceeCCCCCEEEEEECC-------------cEEEEecCC
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKP-ELKLSSSSC----SPVIDPHLSSDGTMIAFVRDC-------------ELHVLNLLI 199 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~-~~~l~~~~~----~~~~~~~~SpDg~~la~~~~~-------------~l~~~~l~~ 199 (776)
++.+| +.....+++++.+.+.. + .+...+. .+.......|||.. .|.... .||.+++.+
T Consensus 76 ~~g~L-v~~~~g~~~~~~~~~~~~t-~~~~~~~~~~~~r~ND~~v~pdG~~-wfgt~~~~~~~~~~~~~~G~lyr~~p~g 152 (307)
T COG3386 76 AGGRL-IACEHGVRLLDPDTGGKIT-LLAEPEDGLPLNRPNDGVVDPDGRI-WFGDMGYFDLGKSEERPTGSLYRVDPDG 152 (307)
T ss_pred CCCeE-EEEccccEEEeccCCceeE-EeccccCCCCcCCCCceeEcCCCCE-EEeCCCccccCccccCCcceEEEEcCCC
Confidence 33333 33345567777776666 4 4433221 23445678889874 444332 389999865
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
+.++++...-. + .++++|||||+.+++.-.
T Consensus 153 ~~~~l~~~~~~---~---------------~NGla~SpDg~tly~aDT 182 (307)
T COG3386 153 GVVRLLDDDLT---I---------------PNGLAFSPDGKTLYVADT 182 (307)
T ss_pred CEEEeecCcEE---e---------------cCceEECCCCCEEEEEeC
Confidence 55555533111 1 347889999998877543
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=63.85 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCC--Cccch
Q 004067 620 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE--DPVGY 697 (776)
Q Consensus 620 ~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 697 (776)
....+-++.++++.. + ..++|+|.|+||+.|.+++.++. +++++....+.....+. .|++.+.. ..+.|
T Consensus 43 ~~a~~ele~~i~~~~-~-~~p~ivGssLGGY~At~l~~~~G--irav~~NPav~P~e~l~-----gylg~~en~ytg~~y 113 (191)
T COG3150 43 QQALKELEKAVQELG-D-ESPLIVGSSLGGYYATWLGFLCG--IRAVVFNPAVRPYELLT-----GYLGRPENPYTGQEY 113 (191)
T ss_pred HHHHHHHHHHHHHcC-C-CCceEEeecchHHHHHHHHHHhC--ChhhhcCCCcCchhhhh-----hhcCCCCCCCCcceE
Confidence 344444555555432 2 34899999999999999999863 44544433332222221 12222220 01112
Q ss_pred h-cCC-----hhhhhccCCC-cEEEEecCC-CCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHH
Q 004067 698 E-YSS-----VMHHVHKMKG-KLLLVHGMI-DENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIW 769 (776)
Q Consensus 698 ~-~~~-----~~~~~~~i~~-P~lii~G~~-D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 769 (776)
. +.. ....+..++. ..+++.... |++.....+...+..+ ...+..+++|.|. .....++.+.
T Consensus 114 ~le~~hI~~l~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~---~f~~~l~~i~ 183 (191)
T COG3150 114 VLESRHIATLCVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFK---GFSRHLQRIK 183 (191)
T ss_pred EeehhhHHHHHHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCcccc---chHHhHHHHH
Confidence 1 000 0112233333 344444444 9988777666666544 5678888999874 4666778888
Q ss_pred HHHH
Q 004067 770 EFIE 773 (776)
Q Consensus 770 ~fl~ 773 (776)
.|..
T Consensus 184 aF~g 187 (191)
T COG3150 184 AFKG 187 (191)
T ss_pred HHhc
Confidence 8864
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=9e-05 Score=75.03 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=61.9
Q ss_pred hhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 579 ~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
.++.++.++|..|+.++.++-..+.. ...+.++..+.+..+++.+++... .++|-++|+|.||.++..+++.
T Consensus 130 s~V~~l~~~g~~vfvIsw~nPd~~~~------~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRNPDASLA------AKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccCchHhhh------hccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHh
Confidence 35789999999999999875432211 122222334667788888877642 3589999999999999999988
Q ss_pred CCCc-eEEEEEcCCCCC
Q 004067 659 FPDV-FQCAVSGAPVTS 674 (776)
Q Consensus 659 ~~~~-~~~~v~~~~~~~ 674 (776)
++.+ ++.+..+....|
T Consensus 202 ~~~k~I~S~T~lts~~D 218 (445)
T COG3243 202 MAAKRIKSLTLLTSPVD 218 (445)
T ss_pred hhhcccccceeeecchh
Confidence 8776 777666544433
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00087 Score=68.89 Aligned_cols=170 Identities=10% Similarity=0.018 Sum_probs=91.5
Q ss_pred ceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCC
Q 004067 231 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 310 (776)
Q Consensus 231 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 310 (776)
..-+|+|||.-|+....| ..|.+|...+--..++ .
T Consensus 108 ~~gRW~~dGtgLlt~GED------------------------------------G~iKiWSrsGMLRStl---------~ 142 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED------------------------------------GVIKIWSRSGMLRSTV---------V 142 (737)
T ss_pred hhcccCCCCceeeeecCC------------------------------------ceEEEEeccchHHHHH---------h
Confidence 345699999998876533 3467777655433333 3
Q ss_pred CCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC
Q 004067 311 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 390 (776)
Q Consensus 311 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (776)
.....++.++|.|++..++|... .++++-.+.-.....--...++.- ....|++ -+.++.+..++
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~c~g-----~h~~IKpL~~n~k~i~WkAHDGii--L~~~W~~--------~s~lI~sgGED 207 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVFCQG-----GHISIKPLAANSKIIRWRAHDGLV--LSLSWST--------QSNIIASGGED 207 (737)
T ss_pred hcCceeEEEEECCCCCceEEecC-----CeEEEeecccccceeEEeccCcEE--EEeecCc--------cccceeecCCc
Confidence 44567899999999987877742 224433332221111111111100 0001111 11244433333
Q ss_pred CceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEE
Q 004067 391 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVA 470 (776)
Q Consensus 391 g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 470 (776)
-...+||.-|...-.-..++..+.++. |.|| + +|...+. +.-++.- +.-+.+..+
T Consensus 208 --~kfKvWD~~G~~Lf~S~~~ey~ITSva-~npd-~-~~~v~S~------nt~R~~~--------------p~~GSifnl 262 (737)
T KOG1524|consen 208 --FRFKIWDAQGANLFTSAAEEYAITSVA-FNPE-K-DYLLWSY------NTARFSS--------------PRVGSIFNL 262 (737)
T ss_pred --eeEEeecccCcccccCChhccceeeee-eccc-c-ceeeeee------eeeeecC--------------CCccceEEE
Confidence 366778877765544444566677765 8888 3 3443332 1111110 111246788
Q ss_pred EEcCCcCEEEEEeeC
Q 004067 471 VLDHNMRNFVDFHDS 485 (776)
Q Consensus 471 ~~spdg~~l~~~~~~ 485 (776)
+||+||++++..++.
T Consensus 263 sWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 263 SWSADGTQATCGTST 277 (737)
T ss_pred EEcCCCceeeccccC
Confidence 999999999887665
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00084 Score=67.74 Aligned_cols=164 Identities=12% Similarity=0.025 Sum_probs=104.7
Q ss_pred CCCcceEEEEEeccCCeEEE-EEEeecCceEEEEEEECCCC--ceEEE-EEeccCceeecccccccCCCCccccCCeEEE
Q 004067 310 NYDEEYLARVNWMHGNILTA-QVLNRSQTKLKVLKFDIKTG--QRKVI-LVEELDSWVNLHDCFTPLDKGVTKYSGGFIW 385 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~l~~~d~~~g--~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (776)
..+...+.+++|.|-.+.++ ++. .+..|.+||+.++ +.+.. ..+..+.+.. .|.|. ++.++.
T Consensus 224 ~~h~~~VeDV~~h~~h~~lF~sv~----dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~---~fnp~-------~~~ilA 289 (422)
T KOG0264|consen 224 SGHEDVVEDVAWHPLHEDLFGSVG----DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV---AFNPF-------NEFILA 289 (422)
T ss_pred ecCCcceehhhccccchhhheeec----CCCeEEEEEcCCCCCCCcccccccCCceeEE---EeCCC-------CCceEE
Confidence 45677889999999776444 443 5667999999853 22222 2223333322 24342 233666
Q ss_pred EeccCCceEEEEEeCCCce--eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCc------ccc
Q 004067 386 ASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT------LEA 457 (776)
Q Consensus 386 ~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~------~~~ 457 (776)
+...++ .|++||+..-+ +..+..+...+..+. |||+.+.|+.++..++. +.+|++.- -|... .++
T Consensus 290 T~S~D~--tV~LwDlRnL~~~lh~~e~H~dev~~V~-WSPh~etvLASSg~D~r--l~vWDls~--ig~eq~~eda~dgp 362 (422)
T KOG0264|consen 290 TGSADK--TVALWDLRNLNKPLHTFEGHEDEVFQVE-WSPHNETVLASSGTDRR--LNVWDLSR--IGEEQSPEDAEDGP 362 (422)
T ss_pred eccCCC--cEEEeechhcccCceeccCCCcceEEEE-eCCCCCceeEecccCCc--EEEEeccc--cccccChhhhccCC
Confidence 666677 99999976543 445555666677665 99999999999887754 88888864 33311 123
Q ss_pred ceeecCCCC----eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 458 PVKLTNGKG----KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 458 ~~~l~~~~~----~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+..|..++| +..++|.|...+++...+..+ .+.+|..
T Consensus 363 pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN---~LqIW~~ 403 (422)
T KOG0264|consen 363 PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN---ILQIWQM 403 (422)
T ss_pred cceeEEecCcccccccccCCCCCCeEEEEecCCc---eEEEeec
Confidence 444554443 567799999998888877664 4555555
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0011 Score=66.81 Aligned_cols=200 Identities=13% Similarity=0.108 Sum_probs=117.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc--eE---------EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK--QE---------LVFSPPDGGLDENNISPEEKLRRERLRERGLG 126 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~--~~---------~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 126 (776)
..++--|....|.-.... ..+++++|...-. .. +|..|++ .
T Consensus 128 nRaRymPQnp~iVAt~t~----~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~------------------------e 179 (422)
T KOG0264|consen 128 NRARYMPQNPNIVATKTS----SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK------------------------E 179 (422)
T ss_pred hhhhhCCCCCcEEEecCC----CCCEEEEEeccCCCcccccccCCCceEEEeecc------------------------c
Confidence 566667777667654333 3578888876422 11 2333222 1
Q ss_pred eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccc------eecCCCCCCCccCceeCCC-CCEEEEEECC-cEEEEecC
Q 004067 127 VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPE------LKLSSSSCSPVIDPHLSSD-GTMIAFVRDC-ELHVLNLL 198 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~------~~l~~~~~~~~~~~~~SpD-g~~la~~~~~-~l~~~~l~ 198 (776)
-.++.|++... |..|.-..+..|-+||+...... .....+....+...+|+|- ...++.+.++ .|.++|+.
T Consensus 180 g~glsWn~~~~-g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 180 GYGLSWNRQQE-GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred ccccccccccc-eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 23467887322 44444457788999998764431 1222333345788999994 4456666654 59999988
Q ss_pred CC--ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 IN--EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~g--~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
++ +......... ..+..++|+|-+..|+-....+
T Consensus 259 ~~~~~~~~~~~ah~-----------------~~vn~~~fnp~~~~ilAT~S~D--------------------------- 294 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHS-----------------AEVNCVAFNPFNEFILATGSAD--------------------------- 294 (422)
T ss_pred CCCCCCcccccccC-----------------CceeEEEeCCCCCceEEeccCC---------------------------
Confidence 64 1111111111 0145678999776665433211
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..|.+||+..=+.....+ ..+...+..+.|||..+.++..+. .+..+.+||+..
T Consensus 295 --------~tV~LwDlRnL~~~lh~~-------e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDls~ 348 (422)
T KOG0264|consen 295 --------KTVALWDLRNLNKPLHTF-------EGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDLSR 348 (422)
T ss_pred --------CcEEEeechhcccCceec-------cCCCcceEEEEeCCCCCceeEecc---cCCcEEEEeccc
Confidence 347888886544333322 567788999999999885554432 455688888854
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=66.88 Aligned_cols=177 Identities=9% Similarity=0.076 Sum_probs=108.4
Q ss_pred CCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEEec-cCceeecccccccCCCCccccCCeEEEEe
Q 004067 310 NYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGGFIWAS 387 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 387 (776)
..+...+..+.|+|.+. .++..+ -++.|...|++++....+.... +..|... .. ++.+...++|..
T Consensus 231 ~~hs~~Vs~l~F~P~n~s~i~ssS----yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~------~d--~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 231 TPHSGPVSGLKFSPANTSQIYSSS----YDGTIRLQDFEGNISEEVLSLDTDNIWFSS------LD--FSAESRSVLFGD 298 (498)
T ss_pred ccCCccccceEecCCChhheeeec----cCceeeeeeecchhhHHHhhcCccceeeee------cc--ccCCCccEEEee
Confidence 45666788999999775 666655 4667999999988776665432 2334322 11 123334455544
Q ss_pred ccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCcccc--ceeecCCC
Q 004067 388 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA--PVKLTNGK 465 (776)
Q Consensus 388 ~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~--~~~l~~~~ 465 (776)
.-|..+++-...++.+...+.-+.-.+.++. +.|-..+++.+++-+++ ..||.+.-- .++ .. +..+....
T Consensus 299 -~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~-~NP~~p~~laT~s~D~T--~kIWD~R~l-~~K---~sp~lst~~Hrr 370 (498)
T KOG4328|consen 299 -NVGNFNVIDLRTDGSEYENLRLHKKKITSVA-LNPVCPWFLATASLDQT--AKIWDLRQL-RGK---ASPFLSTLPHRR 370 (498)
T ss_pred -cccceEEEEeecCCccchhhhhhhcccceee-cCCCCchheeecccCcc--eeeeehhhh-cCC---CCcceecccccc
Confidence 3344455544455555555555555666664 88888888888877765 679987631 333 12 22233333
Q ss_pred CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcC----CCceeEeeccCC
Q 004067 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ----DGSLVLPLYEQP 510 (776)
Q Consensus 466 ~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~----~~~~~~~l~~~~ 510 (776)
.+.++.|||+|-.|+.++.. .+|.++|.+ --.....+.+|.
T Consensus 371 sV~sAyFSPs~gtl~TT~~D----~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTTCQD----NEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred eeeeeEEcCCCCceEeeccC----CceEEeecccccccCCccceeeccC
Confidence 57889999998888877655 358888872 334444555543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00058 Score=63.64 Aligned_cols=240 Identities=10% Similarity=0.067 Sum_probs=144.8
Q ss_pred eeeEEEeecCCCceEEEEe--------CCCcEEEEeCCCCccceecCCCC-CCCccCceeCCCCCEEEEEEC--CcEEEE
Q 004067 127 VTRYEWVKTSSKKKIIMVP--------LPDGIYFQDLSCSKPELKLSSSS-CSPVIDPHLSSDGTMIAFVRD--CELHVL 195 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~--------~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~la~~~~--~~l~~~ 195 (776)
-.+..|||... + +|+++ .++.||+.++..++......... ......++||+....++++.. +.|.++
T Consensus 11 GysvqfSPf~~-n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 11 GYSVQFSPFVE-N-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred cceeEeccccc-c-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEe
Confidence 34677888443 3 34443 66889999996433321222211 112678999998777777654 457777
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE-ecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ-VDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
|+.- ....|.. .+|...-+.++-|++--+++...+ .|
T Consensus 89 d~~~-~s~Pi~~---------------~kEH~~EV~Svdwn~~~r~~~ltsSWD-------------------------- 126 (311)
T KOG0277|consen 89 DLTM-PSKPIHK---------------FKEHKREVYSVDWNTVRRRIFLTSSWD-------------------------- 126 (311)
T ss_pred ccCC-CCcchhH---------------HHhhhhheEEeccccccceeEEeeccC--------------------------
Confidence 7331 1111111 111111144566887666555444 22
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCC-eEEEEEEeecCceEEEEEEECCC-CceE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN-ILTAQVLNRSQTKLKVLKFDIKT-GQRK 352 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d~~~-g~~~ 352 (776)
..|.+|+.+-++...- ..++...++...|||-- ..++.++ .+..+.+||... |+..
T Consensus 127 ----------~TiKLW~~~r~~Sv~T--------f~gh~~~Iy~a~~sp~~~nlfas~S----gd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 127 ----------GTIKLWDPNRPNSVQT--------FNGHNSCIYQAAFSPHIPNLFASAS----GDGTLRLWDVRSPGKFM 184 (311)
T ss_pred ----------CceEeecCCCCcceEe--------ecCCccEEEEEecCCCCCCeEEEcc----CCceEEEEEecCCCcee
Confidence 3478888876654332 16788889999999954 4666665 566788888865 4444
Q ss_pred EEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce--eeccccCCeEEEEEEeecCCCcEEEE
Q 004067 353 VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~~~~s~dg~~i~~ 430 (776)
.+..+...+.. ..| +..+..+++++..++ .|+.||+..-. ...|..+...|+.+- |||...-|+.
T Consensus 185 ~i~ah~~Eil~---cdw-------~ky~~~vl~Tg~vd~--~vr~wDir~~r~pl~eL~gh~~AVRkvk-~Sph~~~lLa 251 (311)
T KOG0277|consen 185 SIEAHNSEILC---CDW-------SKYNHNVLATGGVDN--LVRGWDIRNLRTPLFELNGHGLAVRKVK-FSPHHASLLA 251 (311)
T ss_pred EEEeccceeEe---ecc-------cccCCcEEEecCCCc--eEEEEehhhccccceeecCCceEEEEEe-cCcchhhHhh
Confidence 44443323111 111 122345777776666 88999975432 345666778888775 9999988999
Q ss_pred EEccCCCceeeEEEEEe
Q 004067 431 TGTLDGPLESHLYCAKL 447 (776)
Q Consensus 431 ~~~~~~~~~~~l~~~~~ 447 (776)
+++.+.+ ..||+...
T Consensus 252 SasYDmT--~riw~~~~ 266 (311)
T KOG0277|consen 252 SASYDMT--VRIWDPER 266 (311)
T ss_pred hccccce--EEeccccc
Confidence 9998876 78887763
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0002 Score=71.55 Aligned_cols=153 Identities=10% Similarity=-0.032 Sum_probs=80.9
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCCCCccccCCe-EEEEe
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWAS 387 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 387 (776)
..+...+.++.||||||.|+... .+ ...+|+.++|.. ...+. .+..|.-....|+-.. .... .++.+
T Consensus 183 ~~~~~eV~DL~FS~dgk~lasig----~d-~~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~~d~-----~~~~l~laa~ 251 (398)
T KOG0771|consen 183 IAHHAEVKDLDFSPDGKFLASIG----AD-SARVWSVNTGAALARKTP-FSKDEMFSSCRFSVDN-----AQETLRLAAS 251 (398)
T ss_pred HhhcCccccceeCCCCcEEEEec----CC-ceEEEEeccCchhhhcCC-cccchhhhhceecccC-----CCceEEEEEe
Confidence 45667788999999999888775 23 578899988843 33332 2222322222222111 0112 33333
Q ss_pred cc-CCce---EEEEEeCC-CceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec
Q 004067 388 EK-TGFR---HLYLHDIN-GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 462 (776)
Q Consensus 388 ~~-~g~~---~l~~~~~~-g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~ 462 (776)
.. .+.- .+..|+-+ -...++.......+.++. .|+||+.++..+.. +. +-+|.+.- .+..++.
T Consensus 252 ~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~-VS~dGkf~AlGT~d-Gs--Vai~~~~~--------lq~~~~v 319 (398)
T KOG0771|consen 252 QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA-VSDDGKFLALGTMD-GS--VAIYDAKS--------LQRLQYV 319 (398)
T ss_pred cCCCCceeEEEeeeeccccccchhhhhhccCcceeEE-EcCCCcEEEEeccC-Cc--EEEEEece--------eeeeEee
Confidence 33 2222 22223211 113344444443455554 89999987777664 32 55655541 0112222
Q ss_pred CC--C-CeEEEEEcCCcCEEEEEeeC
Q 004067 463 NG--K-GKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 463 ~~--~-~~~~~~~spdg~~l~~~~~~ 485 (776)
.. . .+..+.|+||.++++-+++.
T Consensus 320 k~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 320 KEAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred hhhheeeeeeEEEcCCcCcccccccC
Confidence 21 1 35678999999999885443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0035 Score=61.39 Aligned_cols=234 Identities=11% Similarity=0.061 Sum_probs=143.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..+++-|-.++++- |.....|.+||+++|+.+. |+.+. ..+..+.+|+
T Consensus 154 Vr~vavdP~n~wf~t-----gs~DrtikIwDlatg~LkltltGhi------------------------~~vr~vavS~- 203 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFAT-----GSADRTIKIWDLATGQLKLTLTGHI------------------------ETVRGVAVSK- 203 (460)
T ss_pred EEEEeeCCCceeEEe-----cCCCceeEEEEcccCeEEEeecchh------------------------heeeeeeecc-
Confidence 578888999998883 4445689999999999754 33221 2466788887
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
---+++.. .+.+|.-||++..+.++..-.+-. .+..+...|.-..|+-..+ .-+.+||+.+....-...+...
T Consensus 204 --rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-- 278 (460)
T KOG0285|consen 204 --RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-- 278 (460)
T ss_pred --cCceEEEecCCCeeEEEechhhhhHHHhccccc-eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC--
Confidence 55566554 678899999999887733332223 3666777886665554433 3588888887654333222221
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+..+...|-.-+|+..+.| ..|.+||+.
T Consensus 279 ---------------~V~~V~~~~~dpqvit~S~D------------------------------------~tvrlWDl~ 307 (460)
T KOG0285|consen 279 ---------------PVASVMCQPTDPQVITGSHD------------------------------------STVRLWDLR 307 (460)
T ss_pred ---------------cceeEEeecCCCceEEecCC------------------------------------ceEEEeeec
Confidence 03345565544456665543 458999998
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~ 372 (776)
.|+.... ++.+...+..++..|.-..++..+ ...|.-|++-.|+. +.+..+..-.-
T Consensus 308 agkt~~t--------lt~hkksvral~lhP~e~~fASas-----~dnik~w~~p~g~f~~nlsgh~~iin---------- 364 (460)
T KOG0285|consen 308 AGKTMIT--------LTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLPEGEFLQNLSGHNAIIN---------- 364 (460)
T ss_pred cCceeEe--------eecccceeeEEecCCchhhhhccC-----CccceeccCCccchhhccccccceee----------
Confidence 8775433 155667788888888765443332 22367777766653 33332221100
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCc
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGT 403 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~ 403 (776)
.++-..++++++....| .|+.||-..|
T Consensus 365 --tl~~nsD~v~~~G~dng--~~~fwdwksg 391 (460)
T KOG0285|consen 365 --TLSVNSDGVLVSGGDNG--SIMFWDWKSG 391 (460)
T ss_pred --eeeeccCceEEEcCCce--EEEEEecCcC
Confidence 01223455777766666 7888886555
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0039 Score=62.69 Aligned_cols=267 Identities=10% Similarity=0.095 Sum_probs=145.7
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR 203 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~ 203 (776)
++.++...| -...++.. .+..+.+.|...++.. .+-.+..-.+....++||...++-.+. ..|++|..-.....
T Consensus 221 gi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l-~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIP---SSSKILTGGEDKTAVLFDKPSNQIL-ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecC---CCCcceecCCCCceEEEecchhhhh-hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 456666666 32334333 4446778888887776 333333334778899999887666554 46888877655544
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
++..-.+. .+..+.-.|.|++++..+.+..
T Consensus 297 ~~~~~h~~-----------------~V~~ls~h~tgeYllsAs~d~~--------------------------------- 326 (506)
T KOG0289|consen 297 TSSRPHEE-----------------PVTGLSLHPTGEYLLSASNDGT--------------------------------- 326 (506)
T ss_pred cccccccc-----------------cceeeeeccCCcEEEEecCCce---------------------------------
Confidence 43322111 1446667899998887764321
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccCce
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELDSW 362 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~ 362 (776)
....|..+|.....-.. ...+-.+...+|.|||-++.... .+..|.+||+.++....-+ .+.++.
T Consensus 327 ---w~Fsd~~~g~~lt~vs~------~~s~v~~ts~~fHpDgLifgtgt----~d~~vkiwdlks~~~~a~Fpght~~v- 392 (506)
T KOG0289|consen 327 ---WAFSDISSGSQLTVVSD------ETSDVEYTSAAFHPDGLIFGTGT----PDGVVKIWDLKSQTNVAKFPGHTGPV- 392 (506)
T ss_pred ---EEEEEccCCcEEEEEee------ccccceeEEeeEcCCceEEeccC----CCceEEEEEcCCccccccCCCCCCce-
Confidence 12334444433222111 11234567789999995443332 5677999999876622111 111111
Q ss_pred eecccccccCCCCccccCCeEEEE-eccCCceEEEEEeCCCc-eeeccccCCe-EEEEEEeecCCCcEEEEEEccCCCce
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWA-SEKTGFRHLYLHDINGT-CLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~-s~~~g~~~l~~~~~~g~-~~~~lt~~~~-~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
..+++..++++.. ..+++ .+.+||+..- ..+.++..+. .+.++ .|+..|+++...+. .
T Consensus 393 -----------k~i~FsENGY~Lat~add~--~V~lwDLRKl~n~kt~~l~~~~~v~s~-~fD~SGt~L~~~g~-----~ 453 (506)
T KOG0289|consen 393 -----------KAISFSENGYWLATAADDG--SVKLWDLRKLKNFKTIQLDEKKEVNSL-SFDQSGTYLGIAGS-----D 453 (506)
T ss_pred -----------eEEEeccCceEEEEEecCC--eEEEEEehhhcccceeeccccccceeE-EEcCCCCeEEeecc-----e
Confidence 0123344554443 34455 5999997643 3444544443 34444 49999998766632 2
Q ss_pred eeEEEEEeCCCCCCccccceeecCCCCe-EEEEEcCCcCEEEEE
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGKGK-HVAVLDHNMRNFVDF 482 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~~~-~~~~~spdg~~l~~~ 482 (776)
+.+|..+-.+... .+...+....|. ..+.|...-++++..
T Consensus 454 l~Vy~~~k~~k~W---~~~~~~~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 454 LQVYICKKKTKSW---TEIKELADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred eEEEEEecccccc---eeeehhhhcccccceeeecccceEEeec
Confidence 5666666321111 133444444433 356777776655544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0025 Score=61.46 Aligned_cols=225 Identities=13% Similarity=0.055 Sum_probs=127.4
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCC--EEEEE-ECCcEEEEecCCCceeEEeeCCCCCc
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT--MIAFV-RDCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~--~la~~-~~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
+|.+++.. .|..|+++|+........|-.+ .+.+....|+++-. .|+.. .++.|.+|+...= ..+-.....
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~H-agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H-- 126 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSH-AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAH-- 126 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceecc-ccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeeccc--
Confidence 56777765 6678999999887655344443 34588889988774 44444 4567888886532 222111110
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+.+..++..|-|| ||..-..+ ..|.+||+-
T Consensus 127 -------------~~~Vt~lsiHPS~K-LALsVg~D-----------------------------------~~lr~WNLV 157 (362)
T KOG0294|consen 127 -------------KGQVTDLSIHPSGK-LALSVGGD-----------------------------------QVLRTWNLV 157 (362)
T ss_pred -------------ccccceeEecCCCc-eEEEEcCC-----------------------------------ceeeeehhh
Confidence 11255788999887 55432111 347899998
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~ 372 (776)
.|+...+ .+-......+.|+|.|.+++.... +.-.||..| +..+ ..+...... - .
T Consensus 158 ~Gr~a~v---------~~L~~~at~v~w~~~Gd~F~v~~~---~~i~i~q~d--~A~v~~~i~~~~r~-l------~--- 213 (362)
T KOG0294|consen 158 RGRVAFV---------LNLKNKATLVSWSPQGDHFVVSGR---NKIDIYQLD--NASVFREIENPKRI-L------C--- 213 (362)
T ss_pred cCcccee---------eccCCcceeeEEcCCCCEEEEEec---cEEEEEecc--cHhHhhhhhccccc-e------e---
Confidence 8875443 122233445999999986555532 233344444 3222 222211000 0 0
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEee-cCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGV-NEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~-s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
+.+..++.+++...++ .|..+|-+.. ....++.+...|-.+..+ .+++ +++.+++.++. +.+|.++..
T Consensus 214 ---~~~l~~~~L~vG~d~~--~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~--I~vWd~~~~ 283 (362)
T KOG0294|consen 214 ---ATFLDGSELLVGGDNE--WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGF--IKVWDIDME 283 (362)
T ss_pred ---eeecCCceEEEecCCc--eEEEeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCce--EEEEEcccc
Confidence 0223445566654444 7888887743 345566666666665534 3444 45666666654 899999973
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00033 Score=72.02 Aligned_cols=204 Identities=12% Similarity=0.058 Sum_probs=111.2
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
+...+-.|++|.|...+ .||+++..++.. +. ..|.+.... ....-..++.-+...++
T Consensus 128 ~~~~~~~gd~lcFnvg~------~lyv~~~~g~~~--~~---------~pi~k~~y~------gt~P~cHdfn~~~a~~~ 184 (636)
T KOG2394|consen 128 NTNQSGKGDRLCFNVGR------ELYVYSYRGAAD--LS---------KPIDKREYK------GTSPTCHDFNSFTATPK 184 (636)
T ss_pred eccccCCCCEEEEecCC------eEEEEEccCcch--hc---------cchhhhccc------CCCCceecccccccCCC
Confidence 44567778888886543 599999886431 11 111111000 00011223333333336
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCCCC----CCCccCceeCCCCCEE--EEEECCcEEEEecCC-----CceeEEe
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSSSS----CSPVIDPHLSSDGTMI--AFVRDCELHVLNLLI-----NEQRQLT 206 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l--a~~~~~~l~~~~l~~-----g~~~~lt 206 (776)
|-.|++. ..++++++|....+.. +|-..+ ..++....|-|-++.+ +.-.++++|+++..- ...-+..
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CcceEEeeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 6666654 5678888887664433 322111 1246678998855544 444567899886531 1111111
Q ss_pred eCCCC-------Ccee-cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 207 HGANG-------NTVT-HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 207 ~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
..+.. .... +.+..|...+. -+..++|||||+.||.++.|
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~FS~DG~~LA~VSqD------------------------------ 311 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAFSPDGKYLATVSQD------------------------------ 311 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccc--cccceeEcCCCceEEEEecC------------------------------
Confidence 11110 0111 23334444333 46789999999999999865
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
.-|.|+|.++.++.-+. ..-.+....++||||||+|+..-
T Consensus 312 ------GfLRvF~fdt~eLlg~m--------kSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 312 ------GFLRIFDFDTQELLGVM--------KSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred ------ceEEEeeccHHHHHHHH--------HhhccceEEEEEcCCccEEEecC
Confidence 34788888776654431 12345677899999999887653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00059 Score=63.58 Aligned_cols=200 Identities=13% Similarity=0.073 Sum_probs=126.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
.-.++||+.-..+++...++| .|.+||.. .....|. ..+++...+.+..|++
T Consensus 63 LfdV~Wse~~e~~~~~a~GDG----SLrl~d~~-~~s~Pi~---------------------~~kEH~~EV~Svdwn~-- 114 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDG----SLRLFDLT-MPSKPIH---------------------KFKEHKREVYSVDWNT-- 114 (311)
T ss_pred eeEeeecCCCcceEEEEecCc----eEEEeccC-CCCcchh---------------------HHHhhhhheEEecccc--
Confidence 368899999999998888765 48888832 2222222 1223446788999998
Q ss_pred CCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEECC-cEEEEecCCCceeEEeeCCCCC
Q 004067 137 SKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 137 ~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
--++++.+ -++.|.+|+..-++...+.+.+. ..+....||| ++..+++.+.+ -+-+||+......+...-...
T Consensus 115 -~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~-~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~- 191 (311)
T KOG0277|consen 115 -VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN-SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS- 191 (311)
T ss_pred -ccceeEEeeccCCceEeecCCCCcceEeecCCc-cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc-
Confidence 55555544 78899999988777663444433 3578899999 56666776653 466777654322222221111
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
+ +...-|+.=...+++....+ ..|+.||+
T Consensus 192 E----------------il~cdw~ky~~~vl~Tg~vd-----------------------------------~~vr~wDi 220 (311)
T KOG0277|consen 192 E----------------ILCCDWSKYNHNVLATGGVD-----------------------------------NLVRGWDI 220 (311)
T ss_pred e----------------eEeecccccCCcEEEecCCC-----------------------------------ceEEEEeh
Confidence 1 12344776566666654221 34788888
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCC
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
..=+.-... +.+++..+..+.|||-.. .|+..+ -+.+..+||.+.+
T Consensus 221 r~~r~pl~e-------L~gh~~AVRkvk~Sph~~~lLaSas----YDmT~riw~~~~~ 267 (311)
T KOG0277|consen 221 RNLRTPLFE-------LNGHGLAVRKVKFSPHHASLLASAS----YDMTVRIWDPERQ 267 (311)
T ss_pred hhcccccee-------ecCCceEEEEEecCcchhhHhhhcc----ccceEEecccccc
Confidence 754432222 267888899999999876 555444 5677888888754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00017 Score=69.76 Aligned_cols=214 Identities=14% Similarity=0.179 Sum_probs=125.9
Q ss_pred CcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEe
Q 004067 77 HSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQD 154 (776)
Q Consensus 77 ~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d 154 (776)
|....+|.+||.++-.. +.|+.| ...+.-..| |.+.|+.. .+..+.+||
T Consensus 213 GlrDnTikiWD~n~~~c~~~L~GH------------------------tGSVLCLqy-----d~rviisGSSDsTvrvWD 263 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLKILTGH------------------------TGSVLCLQY-----DERVIVSGSSDSTVRVWD 263 (499)
T ss_pred ccccCceEEeccccHHHHHhhhcC------------------------CCcEEeeec-----cceEEEecCCCceEEEEe
Confidence 44456889999876543 333322 223444443 55644443 677899999
Q ss_pred CCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee---EEeeCCCCCceecCCcccceecccCCcc
Q 004067 155 LSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR---QLTHGANGNTVTHGLAEYIAQEEMDRKT 231 (776)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~---~lt~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (776)
+++|++...+..+..+ +....|+ +|-.+-...+..+.+|+++..... ++..+... .++
T Consensus 264 v~tge~l~tlihHcea-VLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA-----------------aVN 324 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEA-VLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-----------------AVN 324 (499)
T ss_pred ccCCchhhHHhhhcce-eEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh-----------------hee
Confidence 9999988455554443 6778887 444444444566888888765322 11111110 012
Q ss_pred eEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCC
Q 004067 232 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNY 311 (776)
Q Consensus 232 ~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 311 (776)
.+ .-|.|+|+.++.| ..|.+|+..+++..+. +.+
T Consensus 325 vV--dfd~kyIVsASgD------------------------------------RTikvW~~st~efvRt--------l~g 358 (499)
T KOG0281|consen 325 VV--DFDDKYIVSASGD------------------------------------RTIKVWSTSTCEFVRT--------LNG 358 (499)
T ss_pred ee--ccccceEEEecCC------------------------------------ceEEEEeccceeeehh--------hhc
Confidence 22 2367777766643 4589999999987654 145
Q ss_pred CcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCC
Q 004067 312 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG 391 (776)
Q Consensus 312 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g 391 (776)
+...+..+.+ .|+.++..+ .+..|.+||++.|..-++.+.... .-... -+ ++.-+.+..-+|
T Consensus 359 HkRGIAClQY--r~rlvVSGS----SDntIRlwdi~~G~cLRvLeGHEe----LvRci-------RF-d~krIVSGaYDG 420 (499)
T KOG0281|consen 359 HKRGIACLQY--RDRLVVSGS----SDNTIRLWDIECGACLRVLEGHEE----LVRCI-------RF-DNKRIVSGAYDG 420 (499)
T ss_pred ccccceehhc--cCeEEEecC----CCceEEEEeccccHHHHHHhchHH----hhhhe-------ee-cCceeeeccccc
Confidence 6666665554 677776554 466799999999987665544322 00001 11 222333444466
Q ss_pred ceEEEEEeCCCce
Q 004067 392 FRHLYLHDINGTC 404 (776)
Q Consensus 392 ~~~l~~~~~~g~~ 404 (776)
.|.+||+..+.
T Consensus 421 --kikvWdl~aal 431 (499)
T KOG0281|consen 421 --KIKVWDLQAAL 431 (499)
T ss_pred --eEEEEeccccc
Confidence 88889877654
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00027 Score=68.91 Aligned_cols=227 Identities=10% Similarity=0.091 Sum_probs=119.1
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
.++++-| .+++.++.... .++|++|-.|.-+.+... -|..-+.........+.|.++-+|.||+..-...+.
T Consensus 3 ~v~t~~G-~v~V~v~G~~~-----~~kp~ilT~HDvGlNh~s--cF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~p 74 (283)
T PF03096_consen 3 DVETPYG-SVHVTVQGDPK-----GNKPAILTYHDVGLNHKS--CFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATLP 74 (283)
T ss_dssp EEEETTE-EEEEEEESS-------TTS-EEEEE--TT--HHH--HCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT-----
T ss_pred eeccCce-EEEEEEEecCC-----CCCceEEEeccccccchH--HHHHHhcchhHHHHhhceEEEEEeCCCCCCCccccc
Confidence 4556555 48888886544 367999999985433221 011111111122234579999999999865433322
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccc---
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE--- 684 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~--- 684 (776)
..+-...++++.+.+..+..+.. .+.+.-+|--+|+++-..+|..+|+++.++|+++|...-..+..++..
T Consensus 75 ----~~y~yPsmd~LAe~l~~Vl~~f~--lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~ 148 (283)
T PF03096_consen 75 ----EGYQYPSMDQLAEMLPEVLDHFG--LKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLS 148 (283)
T ss_dssp ----TT-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH
T ss_pred ----ccccccCHHHHHHHHHHHHHhCC--ccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHh
Confidence 22222346666666666666543 357999999999999999999999999999999886542111000000
Q ss_pred -------------------cccC-----CCCC----------------Cc----cchh-cCChhhhhccCCCcEEEEecC
Q 004067 685 -------------------KYMG-----LPSE----------------DP----VGYE-YSSVMHHVHKMKGKLLLVHGM 719 (776)
Q Consensus 685 -------------------~~~~-----~~~~----------------~~----~~~~-~~~~~~~~~~i~~P~lii~G~ 719 (776)
.+++ ...+ +. ..|. +.+.....+...+|+|++.|.
T Consensus 149 ~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~ 228 (283)
T PF03096_consen 149 SWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGD 228 (283)
T ss_dssp -------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEET
T ss_pred cccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEec
Confidence 0000 0000 00 0010 111111234456899999998
Q ss_pred CCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 720 IDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 720 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.-+. ...+.++..+|. .....++.++++|=.. ..+.+..+.+.+.=|++
T Consensus 229 ~Sp~--~~~vv~~ns~Ld--p~~ttllkv~dcGglV-~eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 229 NSPH--VDDVVEMNSKLD--PTKTTLLKVADCGGLV-LEEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp TSTT--HHHHHHHHHHS---CCCEEEEEETT-TT-H-HHH-HHHHHHHHHHHHH
T ss_pred CCcc--hhhHHHHHhhcC--cccceEEEecccCCcc-cccCcHHHHHHHHHHHc
Confidence 8764 356678888773 3578999999987655 44566667777766665
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0027 Score=62.69 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=108.0
Q ss_pred HhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecC-------------------------CCCCCCccCc
Q 004067 122 ERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLS-------------------------SSSCSPVIDP 175 (776)
Q Consensus 122 ~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~-------------------------~~~~~~~~~~ 175 (776)
.+...+.+.+..+ ||.+++.. .|..|.+|+....+.. .+. .+....+..+
T Consensus 191 GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~-~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 191 GHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEED-ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred ccccceeEEEecC---CCCeEEeecccceeeecccCCCccc-cccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 3456788888888 99988876 7888999983322111 110 1122246778
Q ss_pred eeCCCCCEEEEEEC--CcEEEEecCCCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCC
Q 004067 176 HLSSDGTMIAFVRD--CELHVLNLLINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEI 252 (776)
Q Consensus 176 ~~SpDg~~la~~~~--~~l~~~~l~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 252 (776)
.|++ ..++|... .-|.+||+++|... .++.+.. ...+.++|..+.|+..+.+
T Consensus 267 ~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks-------------------l~~i~~~~~~~Ll~~gssd---- 321 (423)
T KOG0313|consen 267 VWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS-------------------LNCISYSPLSKLLASGSSD---- 321 (423)
T ss_pred EEcC--CCceEeecccceEEEEEeecccceeeeecCcc-------------------eeEeecccccceeeecCCC----
Confidence 9988 45666654 46999999988654 3332221 3467789998888876543
Q ss_pred CeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeE-EEEE
Q 004067 253 PRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL-TAQV 331 (776)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~-l~~~ 331 (776)
..|.+||+.++.-...... +.++...+..+.|+|-..+ ++..
T Consensus 322 --------------------------------r~irl~DPR~~~gs~v~~s-----~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 322 --------------------------------RHIRLWDPRTGDGSVVSQS-----LIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred --------------------------------CceeecCCCCCCCceeEEe-----eecchhhhhheecCCCCceEEEEE
Confidence 3578999886643332221 3678889999999998874 4444
Q ss_pred EeecCceEEEEEEECCCCc--eEEEEEec
Q 004067 332 LNRSQTKLKVLKFDIKTGQ--RKVILVEE 358 (776)
Q Consensus 332 ~~~~~~~~~l~~~d~~~g~--~~~l~~~~ 358 (776)
+ .+..+.+||..+.. .-.|..+.
T Consensus 365 S----~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 365 S----YDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred e----cCCeEEEEEeccCCCcceeeccCC
Confidence 4 45678899987644 34444443
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00098 Score=68.42 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHH----cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcC-CCCCccc--------cccccc---
Q 004067 620 EDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA-PVTSWDG--------YDTFYT--- 683 (776)
Q Consensus 620 ~D~~~~i~~l~~----~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~-~~~~~~~--------~~~~~~--- 683 (776)
.-..+|++.+.+ ...++.++.+|.|.|-=|..+..+|+. ..+++|++... ++.++.. |...|.
T Consensus 150 ka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~-D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~ 228 (367)
T PF10142_consen 150 KAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAV-DPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAF 228 (367)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhcc-CcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccch
Confidence 344445444433 345678899999999999999888884 56677777542 3333221 110110
Q ss_pred -----ccc---cCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 684 -----EKY---MGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 684 -----~~~---~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+.. ++.| .........+|+.+..+++.|.|++.|..|+...+..+.-++..|. .+..+..+|+++|..
T Consensus 229 ~dY~~~gi~~~l~tp-~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~---G~K~lr~vPN~~H~~ 304 (367)
T PF10142_consen 229 QDYYNEGITQQLDTP-EFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLP---GEKYLRYVPNAGHSL 304 (367)
T ss_pred hhhhHhCchhhcCCH-HHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCC---CCeeEEeCCCCCccc
Confidence 000 0111 0123345668999999999999999999999999999999999983 366899999999987
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q 004067 756 RRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 756 ~~~~~~~~~~~~~~~fl~~ 774 (776)
.. ......+..|+..
T Consensus 305 ~~----~~~~~~l~~f~~~ 319 (367)
T PF10142_consen 305 IG----SDVVQSLRAFYNR 319 (367)
T ss_pred ch----HHHHHHHHHHHHH
Confidence 44 5667888888865
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=75.38 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=98.5
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCC--cEEEEECCCC-CCCCchhhhhhhhhccCCccHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRG-TARRGLKFEASIKHNCGRIDAEDQLTGAEWL 629 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G--~~v~~~d~rg-~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l 629 (776)
..|++++.||.+.... ...|.-.| ...|.-.| .-|..+|++- .|+-. -. ...+-++.+.++.
T Consensus 175 ~spl~i~aps~p~ap~-tSd~~~~w---qs~lsl~gevvev~tfdl~n~igG~n--I~---------h~ae~~vSf~r~k 239 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPK-TSDRMWSW---QSRLSLKGEVVEVPTFDLNNPIGGAN--IK---------HAAEYSVSFDRYK 239 (784)
T ss_pred CCceEEeccCCCCCCc-cchHHHhH---HHHHhhhceeeeeccccccCCCCCcc--hH---------HHHHHHHHHhhhh
Confidence 4589999999872211 11222122 22333233 4456667652 12111 00 0123344444432
Q ss_pred HH--cCCCCCCcEEEEeechHHHHHHHHHhhCCCc-eEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhh
Q 004067 630 IK--QGLAKVGHIGLYGWSYGGYLSAITLARFPDV-FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 706 (776)
Q Consensus 630 ~~--~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (776)
.- ........|+|+|+|||..++++......|. +.+.|.+. +.. .....+. ...-+.+
T Consensus 240 vlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCig-ypl----------~~vdgpr--------girDE~L 300 (784)
T KOG3253|consen 240 VLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIG-YPL----------DTVDGPR--------GIRDEAL 300 (784)
T ss_pred hhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEec-ccc----------cCCCccc--------CCcchhh
Confidence 22 2334567899999999988888777765544 45555432 211 0000000 1112345
Q ss_pred ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC
Q 004067 707 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 756 (776)
Q Consensus 707 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 756 (776)
-.++.|+|++.|.+|..+++...+.+.++++ ...+++++.+++|.+.
T Consensus 301 ldmk~PVLFV~Gsnd~mcspn~ME~vreKMq---A~~elhVI~~adhsma 347 (784)
T KOG3253|consen 301 LDMKQPVLFVIGSNDHMCSPNSMEEVREKMQ---AEVELHVIGGADHSMA 347 (784)
T ss_pred HhcCCceEEEecCCcccCCHHHHHHHHHHhh---ccceEEEecCCCcccc
Confidence 5678999999999999999999999999885 4568999999999973
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0044 Score=61.46 Aligned_cols=175 Identities=17% Similarity=0.065 Sum_probs=90.5
Q ss_pred CccCceeCCCCCEEEEEE--C--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 171 PVIDPHLSSDGTMIAFVR--D--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 171 ~~~~~~~SpDg~~la~~~--~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
....+++|+||+.+|++. + ..||+....+.....+ .... ...++|++||...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~-------------------l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGS-------------------LTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCc-------------------cccccccCCCCEEEEEc
Confidence 478899999999999999 3 3588877554443333 2221 44788999976444332
Q ss_pred ecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe
Q 004067 247 VDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI 326 (776)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~ 326 (776)
... ....+.+..+++...+.... ......|..+.+||||.
T Consensus 85 -~~~----------------------------------~~~~~~~~~~g~~~~~~v~~-----~~~~~~I~~l~vSpDG~ 124 (253)
T PF10647_consen 85 -GSG----------------------------------GVRVVRDSASGTGEPVEVDW-----PGLRGRITALRVSPDGT 124 (253)
T ss_pred -CCC----------------------------------ceEEEEecCCCcceeEEecc-----cccCCceEEEEECCCCc
Confidence 111 11122233334333332220 11112788999999999
Q ss_pred EEEEEEeecCceEEEEEEEC---CCCceEEEEEeccCceeecccccccCCCCccccCC-eEEEEeccCCceEEEEEeCCC
Q 004067 327 LTAQVLNRSQTKLKVLKFDI---KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDING 402 (776)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~d~---~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~g 402 (776)
.+++...+.. ...|++.-+ ..|....+.....-.-... .....+.|.++ .++......+......+..+|
T Consensus 125 RvA~v~~~~~-~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~-----~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 125 RVAVVVEDGG-GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL-----SDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred EEEEEEecCC-CCeEEEEEEEeCCCCCcceeccceEeccccc-----CcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 8887765442 245555543 2332333322111000000 00011245444 455555443332222577888
Q ss_pred ceeeccccC
Q 004067 403 TCLGPITEG 411 (776)
Q Consensus 403 ~~~~~lt~~ 411 (776)
+..++++..
T Consensus 199 ~~~~~l~~~ 207 (253)
T PF10647_consen 199 GPSTPLPSV 207 (253)
T ss_pred CcccccCCC
Confidence 887777443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=65.92 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=72.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE-EeecCCCC-C--CCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE-LVFSPPDG-G--LDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+..+.+|||++++.-.+. ...|..|++.+|+.. -+...+.. . ....+.+. ..+..-+.....
T Consensus 145 ~~~vals~d~~~~fsask-----~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r---------~~h~keil~~av 210 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASK-----DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR---------KGHVKEILTLAV 210 (479)
T ss_pred ceEEEeeccccceeecCC-----CcceeeeehhcCcccccccccchhhhhccCCCCccc---------ccccceeEEEEE
Confidence 578899999999874433 246999999888743 12211000 0 00000000 011234567888
Q ss_pred eecCCCceEEEEeCCC-cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCC
Q 004067 133 VKTSSKKKIIMVPLPD-GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLI 199 (776)
Q Consensus 133 sp~~~dg~~l~~~~~~-~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~ 199 (776)
|+ ||++|++...+ .|.+||.++.+.+ ....+....+.+..|= +|..=.|.. ++.+-+|+++.
T Consensus 211 S~---Dgkylatgg~d~~v~Iw~~~t~ehv-~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 211 SS---DGKYLATGGRDRHVQIWDCDTLEHV-KVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cC---CCcEEEecCCCceEEEecCcccchh-hcccccccceeeeeee-cCccceeeeecCCceEEEehhH
Confidence 99 99999998554 5669999999998 5433333346666664 333223332 34466666553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.014 Score=61.69 Aligned_cols=238 Identities=11% Similarity=0.059 Sum_probs=148.0
Q ss_pred hcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCC
Q 004067 123 RGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLIN 200 (776)
Q Consensus 123 ~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g 200 (776)
++..+.+..+.| ---+++.+ .++++.+||.++......+.-. ..+++...|-+--++++..++. +|.+++..++
T Consensus 12 rSdRVKsVd~HP---tePw~la~LynG~V~IWnyetqtmVksfeV~-~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 12 RSDRVKSVDFHP---TEPWILAALYNGDVQIWNYETQTMVKSFEVS-EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred cCCceeeeecCC---CCceEEEeeecCeeEEEecccceeeeeeeec-ccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 345688889999 55576654 7899999999998776333222 2357788888888888888764 7899998888
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+....... ++++ ++.++..|---.++..+.|
T Consensus 88 ekV~~FeA---------H~Dy--------IR~iavHPt~P~vLtsSDD-------------------------------- 118 (794)
T KOG0276|consen 88 EKVKTFEA---------HSDY--------IRSIAVHPTLPYVLTSSDD-------------------------------- 118 (794)
T ss_pred eeeEEeec---------cccc--------eeeeeecCCCCeEEecCCc--------------------------------
Confidence 75433222 2222 4467778877777655533
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCC-eEEEEEEeecCceEEEEEEECCCCce-EEEEEec
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN-ILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEE 358 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~ 358 (776)
..|.+||=+.+-...... .++.+++..++|-|.. ...+..+ -+.++.+|.+.+..+ .++..+.
T Consensus 119 ----m~iKlW~we~~wa~~qtf-------eGH~HyVMqv~fnPkD~ntFaS~s----LDrTVKVWslgs~~~nfTl~gHe 183 (794)
T KOG0276|consen 119 ----MTIKLWDWENEWACEQTF-------EGHEHYVMQVAFNPKDPNTFASAS----LDRTVKVWSLGSPHPNFTLEGHE 183 (794)
T ss_pred ----cEEEEeeccCceeeeeEE-------cCcceEEEEEEecCCCccceeeee----ccccEEEEEcCCCCCceeeeccc
Confidence 456777776665444333 6889999999999955 4666554 456788999877654 3444433
Q ss_pred cC-ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 359 LD-SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 359 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
.+ ..++ |-+. +++-|.++.. ....+.+||-.++...+ |..+...+.. ..|.|. --|+.+.+.++
T Consensus 184 kGVN~Vd----yy~~-------gdkpylIsga-DD~tiKvWDyQtk~CV~TLeGHt~Nvs~-v~fhp~-lpiiisgsEDG 249 (794)
T KOG0276|consen 184 KGVNCVD----YYTG-------GDKPYLISGA-DDLTIKVWDYQTKSCVQTLEGHTNNVSF-VFFHPE-LPIIISGSEDG 249 (794)
T ss_pred cCcceEE----eccC-------CCcceEEecC-CCceEEEeecchHHHHHHhhcccccceE-EEecCC-CcEEEEecCCc
Confidence 22 2211 2221 2333444422 23488999988776544 4444444443 336654 33666666665
Q ss_pred CceeeEEE
Q 004067 437 PLESHLYC 444 (776)
Q Consensus 437 ~~~~~l~~ 444 (776)
+ .+||.
T Consensus 250 T--vriWh 255 (794)
T KOG0276|consen 250 T--VRIWN 255 (794)
T ss_pred c--EEEec
Confidence 5 55554
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.018 Score=52.69 Aligned_cols=208 Identities=15% Similarity=0.115 Sum_probs=112.2
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee-cCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK-TSS 137 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp-~~~ 137 (776)
-..|||+|+.||.-++++ .-.+..++.++.+. +.++.. -+ -+...+.+..|-. ++.
T Consensus 94 c~~ws~~geliatgsndk---~ik~l~fn~dt~~~---~g~dle----~n-------------mhdgtirdl~fld~~~s 150 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDK---TIKVLPFNADTCNA---TGHDLE----FN-------------MHDGTIRDLAFLDDPES 150 (350)
T ss_pred EEEecCccCeEEecCCCc---eEEEEecccccccc---cCccee----ee-------------ecCCceeeeEEecCCCc
Confidence 458999999999654433 12344444444332 211110 00 0012355666643 233
Q ss_pred CceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCce
Q 004067 138 KKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 138 dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
.|..|+.. .+-+||+-|-..|..-..+...-+....-..| +|-.++..+.. .|..||+.-........+...+
T Consensus 151 ~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-- 226 (350)
T KOG0641|consen 151 GGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-- 226 (350)
T ss_pred CceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccC--
Confidence 34444444 45569998888777652333322211222334 34444443332 4777887655443322221111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.|+. -..+.+++..|.|+.|+....+ ..-.+||+.+
T Consensus 227 -~gle-------ssavaav~vdpsgrll~sg~~d------------------------------------ssc~lydirg 262 (350)
T KOG0641|consen 227 -GGLE-------SSAVAAVAVDPSGRLLASGHAD------------------------------------SSCMLYDIRG 262 (350)
T ss_pred -CCcc-------cceeEEEEECCCcceeeeccCC------------------------------------CceEEEEeeC
Confidence 0100 0114567788988877654322 3457899999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
++..+-- .++...+..+.|||-..+++..+ -+..|.+-|+.+-
T Consensus 263 ~r~iq~f--------~phsadir~vrfsp~a~yllt~s----yd~~ikltdlqgd 305 (350)
T KOG0641|consen 263 GRMIQRF--------HPHSADIRCVRFSPGAHYLLTCS----YDMKIKLTDLQGD 305 (350)
T ss_pred Cceeeee--------CCCccceeEEEeCCCceEEEEec----ccceEEEeecccc
Confidence 9876652 45667789999999887666555 4566778787653
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00054 Score=66.02 Aligned_cols=208 Identities=14% Similarity=0.070 Sum_probs=117.4
Q ss_pred CCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 64 PDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 64 pDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
|+-...|-.+.. .-|.+||.-+|+.|.-.. .+...+.+ .+..++.||| ||.+|+
T Consensus 121 P~t~l~a~ssr~-----~PIh~wdaftG~lraSy~---------~ydh~de~---------taAhsL~Fs~---DGeqlf 174 (406)
T KOG2919|consen 121 PSTNLFAVSSRD-----QPIHLWDAFTGKLRASYR---------AYDHQDEY---------TAAHSLQFSP---DGEQLF 174 (406)
T ss_pred Cccceeeecccc-----Cceeeeeccccccccchh---------hhhhHHhh---------hhheeEEecC---CCCeEe
Confidence 555555433332 249999999998765442 11111111 3567889999 999999
Q ss_pred EeCCCcEEEEeCC-CCccc---eecCCC---CCCCccCceeCC-CCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCce
Q 004067 144 VPLPDGIYFQDLS-CSKPE---LKLSSS---SCSPVIDPHLSS-DGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 144 ~~~~~~l~~~d~~-~~~~~---~~l~~~---~~~~~~~~~~Sp-Dg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
-..+..|.+.|++ .|.-. ..++.+ ..+.+...+||| |.+.+|.-+-. .+-++.-.++...++..+..+
T Consensus 175 aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g--- 251 (406)
T KOG2919|consen 175 AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG--- 251 (406)
T ss_pred ecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC---
Confidence 9989999999983 33221 122222 233467789999 66677776644 344444445555555443322
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
| +..+.|-+||++|+..+... -.|-.||+.-
T Consensus 252 --G------------vThL~~~edGn~lfsGaRk~-----------------------------------dkIl~WDiR~ 282 (406)
T KOG2919|consen 252 --G------------VTHLQWCEDGNKLFSGARKD-----------------------------------DKILCWDIRY 282 (406)
T ss_pred --C------------eeeEEeccCcCeecccccCC-----------------------------------CeEEEEeehh
Confidence 1 55788999999887654221 2345555542
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-CceEEEEEe
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVILVE 357 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~ 357 (776)
-+-....+. +.......---+...|+|++|+... .++.|.+||+++ |....++..
T Consensus 283 ~~~pv~~L~----rhv~~TNQRI~FDld~~~~~LasG~----tdG~V~vwdlk~~gn~~sv~~~ 338 (406)
T KOG2919|consen 283 SRDPVYALE----RHVGDTNQRILFDLDPKGEILASGD----TDGSVRVWDLKDLGNEVSVTGN 338 (406)
T ss_pred ccchhhhhh----hhccCccceEEEecCCCCceeeccC----CCccEEEEecCCCCCccccccc
Confidence 221111110 0000001111234567888876553 566799999988 665554443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00032 Score=78.75 Aligned_cols=244 Identities=13% Similarity=0.144 Sum_probs=136.6
Q ss_pred CeeeEEEeecCCCceE----EEEe-CCCcEEEEeCCC----Cccce--ecCCCCCCCccCceeCCCCC-EEEEEEC-CcE
Q 004067 126 GVTRYEWVKTSSKKKI----IMVP-LPDGIYFQDLSC----SKPEL--KLSSSSCSPVIDPHLSSDGT-MIAFVRD-CEL 192 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~----l~~~-~~~~l~~~d~~~----~~~~~--~l~~~~~~~~~~~~~SpDg~-~la~~~~-~~l 192 (776)
..+...|++ -|.. |+-. .+|+|-+||... ++... +...+ .+.+....|+|... .||-..+ ++|
T Consensus 66 rF~kL~W~~---~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 66 RFNKLAWGS---YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH-TGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cceeeeecc---cCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc-CCceeeeeccccCCceeeccCCCCcE
Confidence 567889999 7777 4432 788999998754 22220 11222 23478899999888 5555543 589
Q ss_pred EEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 193 HVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 193 ~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
++||+.. .....+..... .+ .-+..++|...-..|+-....
T Consensus 142 ~iWDlnn-~~tP~~~~~~~------~~--------~eI~~lsWNrkvqhILAS~s~------------------------ 182 (1049)
T KOG0307|consen 142 LIWDLNK-PETPFTPGSQA------PP--------SEIKCLSWNRKVSHILASGSP------------------------ 182 (1049)
T ss_pred EEeccCC-cCCCCCCCCCC------Cc--------ccceEeccchhhhHHhhccCC------------------------
Confidence 9999985 22222221110 00 002345565444444322111
Q ss_pred ecCCCCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCC-
Q 004067 273 HAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTG- 349 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g- 349 (776)
+...-+||+..++.. .+.. .........++|.||+. .|+..++ +.....|-+||+.--
T Consensus 183 -----------sg~~~iWDlr~~~pii~ls~-------~~~~~~~S~l~WhP~~aTql~~As~-dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 183 -----------SGRAVIWDLRKKKPIIKLSD-------TPGRMHCSVLAWHPDHATQLLVASG-DDSAPVIQLWDLRFAS 243 (1049)
T ss_pred -----------CCCceeccccCCCccccccc-------CCCccceeeeeeCCCCceeeeeecC-CCCCceeEeecccccC
Confidence 123578888776432 2221 22335677899999987 5555544 335667999997432
Q ss_pred -ceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-ecccc-CCeEEEEEEeecCCCc
Q 004067 350 -QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITE-GDWMVEQIVGVNEASG 426 (776)
Q Consensus 350 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~-~~~~~~~~~~~s~dg~ 426 (776)
-.+.+..|..+.-.. .|.+ .+..+++++.+++ +++.|+.++++. -.+.. ++|. .. +.|.|..-
T Consensus 244 sP~k~~~~H~~Gilsl---sWc~-------~D~~lllSsgkD~--~ii~wN~~tgEvl~~~p~~~nW~-fd-v~w~pr~P 309 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSL---SWCP-------QDPRLLLSSGKDN--RIICWNPNTGEVLGELPAQGNWC-FD-VQWCPRNP 309 (1049)
T ss_pred Cchhhhcccccceeee---ccCC-------CCchhhhcccCCC--CeeEecCCCceEeeecCCCCcce-ee-eeecCCCc
Confidence 233443443331110 1111 2446788888888 999999998763 34433 3332 22 23776665
Q ss_pred EEEEEEccCCCceeeEEEEEe
Q 004067 427 QVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 427 ~i~~~~~~~~~~~~~l~~~~~ 447 (776)
-++..+.-++. +.||.+--
T Consensus 310 ~~~A~asfdgk--I~I~sl~~ 328 (1049)
T KOG0307|consen 310 SVMAAASFDGK--ISIYSLQG 328 (1049)
T ss_pred chhhhheeccc--eeeeeeec
Confidence 45555555554 77887763
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0075 Score=58.27 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=88.5
Q ss_pred EcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 62 FSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 62 ~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
..-+|.++| .|.....|.++|...... ..|..| ...+....|.++..-+.
T Consensus 49 vAVs~~~~a-----SGssDetI~IYDm~k~~qlg~ll~H------------------------agsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 49 LAVSGPYVA-----SGSSDETIHIYDMRKRKQLGILLSH------------------------AGSITALKFYPPLSKSH 99 (362)
T ss_pred EEecceeEe-----ccCCCCcEEEEeccchhhhcceecc------------------------ccceEEEEecCCcchhh
Confidence 345677777 333356899999986543 333333 23678889988332224
Q ss_pred EEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCceecCCc
Q 004067 141 IIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVTHGLA 219 (776)
Q Consensus 141 ~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~ 219 (776)
.|.-..++.|-+|+...=+....+..+.+ .+..++..|.|+.-+-+.. .-|..|||..|..--+..-...
T Consensus 100 LlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-------- 170 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-------- 170 (362)
T ss_pred eeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--------
Confidence 45556889999999876544424444444 4889999999985444444 3588999998876544433221
Q ss_pred ccceecccCCcceEEECCCCCeEEEEE
Q 004067 220 EYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 220 ~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
...+.|+|.|.+.+...
T Consensus 171 ----------at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 171 ----------ATLVSWSPQGDHFVVSG 187 (362)
T ss_pred ----------ceeeEEcCCCCEEEEEe
Confidence 22477999999776654
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.4e-05 Score=66.30 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=78.0
Q ss_pred HHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhh
Q 004067 627 EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 706 (776)
Q Consensus 627 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (776)
+|++++. -+.+..+-|-||||+.|+.+..++|++|..+|+.+++.+.+.+-. .-.++...| ++|.+.+
T Consensus 92 rYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg--------~yyddDv~y--nsP~dyl 159 (227)
T COG4947 92 RYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFG--------GYYDDDVYY--NSPSDYL 159 (227)
T ss_pred HHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcc--------ccccCceee--cChhhhc
Confidence 3555543 225678899999999999999999999999999999987653211 111111112 3444544
Q ss_pred ccCC----------CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 707 HKMK----------GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 707 ~~i~----------~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
.++. .-+.+..|..|+..+ +...+.+.|....++..+.++.+..|..
T Consensus 160 pg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 160 PGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred cCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhccccccc
Confidence 4443 246777788777654 5577778887777788887887777754
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.022 Score=54.81 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=39.2
Q ss_pred ceeCCCCCEEEEEECCcEEEEecCCCce-----eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 175 PHLSSDGTMIAFVRDCELHVLNLLINEQ-----RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 175 ~~~SpDg~~la~~~~~~l~~~~l~~g~~-----~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
++.+.||+.||.+.+..|-+....+.-. .++..+ ..+.|. .++||||+..|||..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD--------~~PQWR---------kl~WSpD~tlLa~a~ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKD--------PNPQWR---------KLAWSPDCTLLAYAE 62 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCC--------CCchhe---------EEEECCCCcEEEEEc
Confidence 4678999999999998887776665421 122222 244554 789999999999976
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.019 Score=56.84 Aligned_cols=192 Identities=11% Similarity=0.021 Sum_probs=107.7
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEee-cCceEEEEEEECCCCceEEEEEeccCceee
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR-SQTKLKVLKFDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 364 (776)
.+.++|..+++....-.+ .....+...-.|||||++|+.+-++ ......|-+||+. ...+.+-+-....-..
T Consensus 29 ~~~v~D~~~g~~~~~~~a------~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGP 101 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWA------PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGP 101 (305)
T ss_pred EEEEEEcCCCceeeEEcC------CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcCh
Confidence 478999999987654332 3445566778999999988776543 3456789999998 4555655433221100
Q ss_pred cccccccCCCCccccCCe-EEEEecc-------CC---------ceEEEEEeCCCce-eec--cccC--CeEEEEEEeec
Q 004067 365 LHDCFTPLDKGVTKYSGG-FIWASEK-------TG---------FRHLYLHDINGTC-LGP--ITEG--DWMVEQIVGVN 422 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~-~~~~s~~-------~g---------~~~l~~~~~~g~~-~~~--lt~~--~~~~~~~~~~s 422 (776)
.+ +.+.+++ .+.+.+. .| ..+|-++|..+|+ ..+ |... ...++.+ .++
T Consensus 102 He---------l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL-a~~ 171 (305)
T PF07433_consen 102 HE---------LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL-AVD 171 (305)
T ss_pred hh---------EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE-Eec
Confidence 00 1222222 3333321 12 2478888766654 444 4222 3345554 488
Q ss_pred CCCcEEEEEEccCCC-ce-ee-EEEEEeCCCCCCccccceeecCC-------CC-eEEEEEcCCcCEEEEEeeCCCCCCE
Q 004067 423 EASGQVYFTGTLDGP-LE-SH-LYCAKLYPDWNHTLEAPVKLTNG-------KG-KHVAVLDHNMRNFVDFHDSLDSPPR 491 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~-~~-~~-l~~~~~~~~g~~~~~~~~~l~~~-------~~-~~~~~~spdg~~l~~~~~~~~~~~~ 491 (776)
.+|.. +|...+.++ .+ .- |.... .|. .++.+... .+ +-++++++||..++.++-.. .-
T Consensus 172 ~~G~V-~~a~Q~qg~~~~~~PLva~~~---~g~----~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG---g~ 240 (305)
T PF07433_consen 172 GDGTV-AFAMQYQGDPGDAPPLVALHR---RGG----ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG---GR 240 (305)
T ss_pred CCCcE-EEEEecCCCCCccCCeEEEEc---CCC----cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC---CE
Confidence 88874 444443322 11 11 22222 232 23333221 12 45789999999888775443 46
Q ss_pred EEEEEcCCCceeEe
Q 004067 492 ILLCSLQDGSLVLP 505 (776)
Q Consensus 492 i~~~~~~~~~~~~~ 505 (776)
+.++|..+|+.+..
T Consensus 241 ~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 241 VAVWDAATGRLLGS 254 (305)
T ss_pred EEEEECCCCCEeec
Confidence 88889988875443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0032 Score=65.87 Aligned_cols=175 Identities=8% Similarity=0.049 Sum_probs=105.8
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCE--EEEEECCcEEEEecCCCce
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTM--IAFVRDCELHVLNLLINEQ 202 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~--la~~~~~~l~~~~l~~g~~ 202 (776)
-+...+..| -|.+|+.. .++.+.+|.+.||.....+.. .+ .+..++|+|.+.. ||......+++++..=|..
T Consensus 402 ~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~-~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 402 LVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQF-DS-EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred eEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEee-cc-eeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 456788888 99999987 678899999999988733333 33 3889999998873 3333445688887765521
Q ss_pred -------eEEeeCCCCCceecCCccccee----ccc---------CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCC
Q 004067 203 -------RQLTHGANGNTVTHGLAEYIAQ----EEM---------DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGK 262 (776)
Q Consensus 203 -------~~lt~~~~~~~~~~~~~~~~~~----~~~---------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 262 (776)
..+...+....-...+..|... .+. ..+..+.|.-+|.+|+.+..+.+.
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~----------- 545 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN----------- 545 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc-----------
Confidence 1122221111111122334332 111 124567777777777766533221
Q ss_pred CCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEE
Q 004067 263 SSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVL 342 (776)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 342 (776)
..+.+.++..++.. .. +....+.+..+.|.|---.++.++ ...|.
T Consensus 546 ----------------------~~VliHQLSK~~sQ-~P-------F~kskG~vq~v~FHPs~p~lfVaT-----q~~vR 590 (733)
T KOG0650|consen 546 ----------------------KSVLIHQLSKRKSQ-SP-------FRKSKGLVQRVKFHPSKPYLFVAT-----QRSVR 590 (733)
T ss_pred ----------------------ceEEEEeccccccc-Cc-------hhhcCCceeEEEecCCCceEEEEe-----ccceE
Confidence 34666666554433 21 135567788899999877666665 34588
Q ss_pred EEECCCCce
Q 004067 343 KFDIKTGQR 351 (776)
Q Consensus 343 ~~d~~~g~~ 351 (776)
+||+..++.
T Consensus 591 iYdL~kqel 599 (733)
T KOG0650|consen 591 IYDLSKQEL 599 (733)
T ss_pred EEehhHHHH
Confidence 999877553
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00029 Score=76.13 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=82.1
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccccccc--chh---------hhHHHHhCCcEEEEECC-CCCCC
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT--VDM---------RAQYLRSKGILVWKLDN-RGTAR 601 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~--~~~---------~~~~l~~~G~~v~~~d~-rg~g~ 601 (776)
+..+.+|++...+. +...|+||+++||||+..+...+... +.. .-..+.+ -..++.+|. +|+|.
T Consensus 60 ~~~lFyw~~~s~~~---~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~~~~l~iDqP~G~G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRNG---NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-EAYVIYVDQPAGVGF 135 (462)
T ss_pred CceEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-ccCeEEEeCCCCcCc
Confidence 56799999986643 25679999999999987643222110 000 0001222 256778885 57776
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhC---C-------CceEEEEEcC
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARF---P-------DVFQCAVSGA 670 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~---~-------~~~~~~v~~~ 670 (776)
|-..... .........+|+..+++.+.++ +.....++.|+|+||||..+..+|.+- . --++++++..
T Consensus 136 S~~~~~~--~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 136 SYADKAD--YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred ccCCCCC--CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 6322111 0000112366777777766554 444567999999999999998877641 1 1368888888
Q ss_pred CCCC
Q 004067 671 PVTS 674 (776)
Q Consensus 671 ~~~~ 674 (776)
|+++
T Consensus 214 g~~d 217 (462)
T PTZ00472 214 GLTD 217 (462)
T ss_pred cccC
Confidence 8765
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.094 Score=56.87 Aligned_cols=290 Identities=9% Similarity=0.075 Sum_probs=155.4
Q ss_pred cCCCCEEEEEeCCCCcCcceEEEE-ecCCCc-eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 63 SPDDNLITYLLSPDHSLSRKVFSF-DPKTCK-QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 63 SpDG~~ia~~~~~~~~~~~~l~~~-~~~~~~-~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
..+|.+-+|.....|.. .-++.- ...++. ++.|.+..... .... ...+..++.|| |.+
T Consensus 82 ~~~~~~~Yy~r~~~g~~-y~~~~R~~~~g~~~eevlLD~n~~A-------~g~~---------f~~Lg~~~~s~---D~~ 141 (682)
T COG1770 82 YRKGPYEYYSRTEEGKE-YPIYCRQPDEGGEGEEVLLDVNKEA-------EGHD---------FFSLGAASISP---DHN 141 (682)
T ss_pred cccCCeeEEEEecCCCc-ceeEEeccCCCCCceeEeecchhcc-------Cccc---------ceeeeeeeeCC---CCc
Confidence 44778888887755532 233333 234444 56666533211 1000 12345677788 999
Q ss_pred EEEEeCC------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC------cEEEEecCC--CceeEEe
Q 004067 141 IIMVPLP------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC------ELHVLNLLI--NEQRQLT 206 (776)
Q Consensus 141 ~l~~~~~------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~------~l~~~~l~~--g~~~~lt 206 (776)
.++++.+ -.|.+.|+.+|+.. .-.-. .......|.+|++.+.|++.. .||...+.+ .+.+.+-
T Consensus 142 ~la~s~D~~G~e~y~lr~kdL~tg~~~-~d~i~--~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvy 218 (682)
T COG1770 142 LLAYSVDVLGDEQYTLRFKDLATGEEL-PDEIT--NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVY 218 (682)
T ss_pred eEEEEEecccccEEEEEEEeccccccc-chhhc--ccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEE
Confidence 9999833 34778899998876 22111 124568999999999999853 488887777 5555555
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
+..... . ...+.=|...++|+....+. .+.+
T Consensus 219 eE~d~~-f---------------~~~v~~s~s~~yi~i~~~~~---------------------------------~tsE 249 (682)
T COG1770 219 EEKDDR-F---------------FLSVGRSRSEAYIVISLGSH---------------------------------ITSE 249 (682)
T ss_pred EcCCCc-E---------------EEEeeeccCCceEEEEcCCC---------------------------------ccee
Confidence 443321 0 00111233444444433111 1256
Q ss_pred EEEEEcCCCc--eEEEEcccCCCCCCCCcceEEEEEecc--CCeEEEEEEeecCceEEEEEEEC--CCCceEEEEEeccC
Q 004067 287 LGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVNWMH--GNILTAQVLNRSQTKLKVLKFDI--KTGQRKVILVEELD 360 (776)
Q Consensus 287 l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~ 360 (776)
+++++.+... .+.+.. ...+ +.++. -|..+++.+|....+..|+.-.. .....+.+..+...
T Consensus 250 ~~ll~a~~p~~~p~vv~p--------r~~g----~eY~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~ 317 (682)
T COG1770 250 VRLLDADDPEAEPKVVLP--------RENG----VEYSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHRED 317 (682)
T ss_pred EEEEecCCCCCceEEEEE--------cCCC----cEEeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCC
Confidence 6777766443 344322 1111 11222 25567777777767777877665 22334555555444
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEee--cCCCcEEEEEE-ccCCC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGV--NEASGQVYFTG-TLDGP 437 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~--s~dg~~i~~~~-~~~~~ 437 (776)
........| .+.+++.-.+.|-..|++++..+++...|.-.+......+.. ..+...|-|.. +--.|
T Consensus 318 ~~l~~~~~f----------~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP 387 (682)
T COG1770 318 VRLEGVDLF----------ADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTP 387 (682)
T ss_pred ceeeeeeee----------ccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeeccccc
Confidence 333321111 334555556688899999998776666565443211100011 12233344443 22334
Q ss_pred ceeeEEEEEeC
Q 004067 438 LESHLYCAKLY 448 (776)
Q Consensus 438 ~~~~l~~~~~~ 448 (776)
..++..++.
T Consensus 388 --~~~~~~dm~ 396 (682)
T COG1770 388 --ATLFDYDMA 396 (682)
T ss_pred --ceeEEeecc
Confidence 678888885
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00022 Score=69.02 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHH--------HhCCcEEEEECCCCCC--CCchhhhhhhhhccCCccHHHHHH
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYL--------RSKGILVWKLDNRGTA--RRGLKFEASIKHNCGRIDAEDQLT 624 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l--------~~~G~~v~~~d~rg~g--~~~~~~~~~~~~~~~~~~~~D~~~ 624 (776)
..|||+||..++.. .++.++..+ ....+.++++|+.... ..+.... ...+-+..
T Consensus 5 ~pVlFIhG~~Gs~~-------q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l~---------~q~~~~~~ 68 (225)
T PF07819_consen 5 IPVLFIHGNAGSYK-------QVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTLQ---------RQAEFLAE 68 (225)
T ss_pred CEEEEECcCCCCHh-------HHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccHH---------HHHHHHHH
Confidence 57899999666532 111122222 1235889999986432 1111111 11233445
Q ss_pred HHHHHHHcC---CCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEcC
Q 004067 625 GAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGA 670 (776)
Q Consensus 625 ~i~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~~ 670 (776)
+++.+.+.. .....+|.|+||||||.++-.++...+ +.++.++.++
T Consensus 69 ~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 69 AIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred HHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 555555432 346789999999999999988876543 3566666543
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=69.87 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=51.5
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcE---EEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~---v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
.|||+||..+... ..|..++..|.++||. +++++|-..... ....... .......++.++|+.+++.
T Consensus 3 PVVlVHG~~~~~~------~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl~~ 72 (219)
T PF01674_consen 3 PVVLVHGTGGNAY------SNWSTLAPYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVLAY 72 (219)
T ss_dssp -EEEE--TTTTTC------GGCCHHHHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCcchh------hCHHHHHHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHHHh
Confidence 4678999654322 2456678999999999 799998433221 1111111 1122346777778777765
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
- .. +|-|+||||||.++-+++..
T Consensus 73 T--Ga-kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 73 T--GA-KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp H--T---EEEEEETCHHHHHHHHHHH
T ss_pred h--CC-EEEEEEcCCcCHHHHHHHHH
Confidence 3 34 99999999999999888753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00095 Score=62.64 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-----ceEEEEEcCCCCC--cccccccccccccCCCC
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTS--WDGYDTFYTEKYMGLPS 691 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-----~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~ 691 (776)
..-+..++.+|.++..+ .++=++||||||.....++..+.+ .+...|.+++..+ ....+....+-....|.
T Consensus 119 s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~~~ 196 (288)
T COG4814 119 SKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDGPG 196 (288)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccCcc
Confidence 34577888888888744 488999999999999999876422 1344444443322 00000000010011110
Q ss_pred CCccchhcCChhhhhccC--CCcEEEEecCC------CCccChHHHHHHHHHHHHCCCCeEEEEecC--CCCCCCCCCcH
Q 004067 692 EDPVGYEYSSVMHHVHKM--KGKLLLVHGMI------DENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRRHRDR 761 (776)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i--~~P~lii~G~~------D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H~~~~~~~~ 761 (776)
.....|..+-. .....+ ..-+|++.|+- |..||...+...+.-+...++.+.--+|+| +.|.-.+ ..
T Consensus 197 ~~~t~y~~y~~-~n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~lh--en 273 (288)
T COG4814 197 LIKTPYYDYIA-KNYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKLH--EN 273 (288)
T ss_pred ccCcHHHHHHH-hcceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhccC--CC
Confidence 00000100000 001112 13689999976 567888888888888877666665556665 5686532 33
Q ss_pred HHHHHHHHHHHHH
Q 004067 762 IYMEERIWEFIER 774 (776)
Q Consensus 762 ~~~~~~~~~fl~~ 774 (776)
..+...+..||-+
T Consensus 274 ~~v~~yv~~FLw~ 286 (288)
T COG4814 274 PTVAKYVKNFLWE 286 (288)
T ss_pred hhHHHHHHHHhhc
Confidence 4566777777754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.023 Score=62.37 Aligned_cols=249 Identities=13% Similarity=0.038 Sum_probs=147.3
Q ss_pred cceEEEEecCCCceEE--eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCC
Q 004067 80 SRKVFSFDPKTCKQEL--VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLS 156 (776)
Q Consensus 80 ~~~l~~~~~~~~~~~~--l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~ 156 (776)
...|.+|+...+..-. +..| ..++....+.- -+..|+.. .+.++.+||..
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~GH------------------------~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVGH------------------------FGGVWGLAFPS---GGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred CceeEEeecccceEEEeeccCC------------------------CCCceeEEEec---CCCEEEEEecCCcEEeEecC
Confidence 4578899998887633 3332 23666666654 34445544 68899999999
Q ss_pred CCccceecCCCCCCCccCceeCCCCCEEEE-EECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEE
Q 004067 157 CSKPELKLSSSSCSPVIDPHLSSDGTMIAF-VRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWW 235 (776)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~SpDg~~la~-~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 235 (776)
+|+....+...... + -..+-+...++- ..+..|.+|++.+|....+...... + +..+..
T Consensus 280 sg~C~~~l~gh~st-v--~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~---------~--------V~~v~~ 339 (537)
T KOG0274|consen 280 TGECTHSLQGHTSS-V--RCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG---------P--------VNCVQL 339 (537)
T ss_pred CCcEEEEecCCCce-E--EEEEccCceEeeccCCceEEEEeccCcceEEEeccccc---------c--------EEEEEe
Confidence 99987334322211 2 222333333333 2567899999999988777553211 0 334444
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcce
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEY 315 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 315 (776)
+ +..++..+.+ ..|.+||+.+++.... +.++.+.
T Consensus 340 ~--~~~lvsgs~d------------------------------------~~v~VW~~~~~~cl~s--------l~gH~~~ 373 (537)
T KOG0274|consen 340 D--EPLLVSGSYD------------------------------------GTVKVWDPRTGKCLKS--------LSGHTGR 373 (537)
T ss_pred c--CCEEEEEecC------------------------------------ceEEEEEhhhceeeee--------ecCCcce
Confidence 3 6767666643 3589999998775543 2567888
Q ss_pred EEEEEeccCCeEEEEEEeecCceEEEEEEECCCC-ceEE-EEEeccCceeecccccccCCCCccccCCeEEEEeccCCce
Q 004067 316 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-QRKV-ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR 393 (776)
Q Consensus 316 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g-~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 393 (776)
+..+.+... ..++..+ -+..|..||+.++ +... +..+...... . . -.+.++..+..++
T Consensus 374 V~sl~~~~~-~~~~Sgs----~D~~IkvWdl~~~~~c~~tl~~h~~~v~~-----l-------~-~~~~~Lvs~~aD~-- 433 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGS----LDTTIKVWDLRTKRKCIHTLQGHTSLVSS-----L-------L-LRDNFLVSSSADG-- 433 (537)
T ss_pred EEEEEecCc-ceEEeee----eccceEeecCCchhhhhhhhcCCcccccc-----c-------c-cccceeEeccccc--
Confidence 888866554 5555544 3467999999998 4332 2222211100 0 0 1234566666677
Q ss_pred EEEEEeCCCceeeccccCC--eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 394 HLYLHDINGTCLGPITEGD--WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 394 ~l~~~~~~g~~~~~lt~~~--~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.|.+||...++..+...+. ..+..+. +. +..++.+..++. +.+|.+..
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~-~~---~~~il~s~~~~~--~~l~dl~~ 483 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALA-LG---KEEILCSSDDGS--VKLWDLRS 483 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEee-cC---cceEEEEecCCe--eEEEeccc
Confidence 8999998877765554442 2233221 22 456666666554 78887763
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.15 Score=56.46 Aligned_cols=145 Identities=14% Similarity=0.015 Sum_probs=91.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+..++-|+..+-... ..+++|+...+. +....+ .+...+...+...++||
T Consensus 163 ~~~I~~~~~ge~~~i~~~------~~~~~~~v~~~~-~~~~~~------------------~~~~~Htf~~t~~~~sp-- 215 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHM------CKIHIYFVPKHT-KHTSSR------------------DITVHHTFNITCVALSP-- 215 (792)
T ss_pred CccEEEcCCceEEEEEEe------eeEEEEEecccc-eeeccc------------------hhhhhhcccceeEEecc--
Confidence 356677777775544433 247788777655 222211 11223334567789999
Q ss_pred CCceEEEEe-CCCcEEEEeCCC--Cccc-eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSC--SKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~--~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
.++.++.. .+|+|.+|.--+ +... .++-+-....+....||+||.+|+-... ..|-+|.+++++.+-|..-+..
T Consensus 216 -n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~ 294 (792)
T KOG1963|consen 216 -NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSP 294 (792)
T ss_pred -ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCe
Confidence 99999977 678899996544 2111 1222223335888999999998876543 4688999999984444332221
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
+..+.|||||...+....
T Consensus 295 ------------------I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 295 ------------------ILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ------------------eEEEEEcCCCCeEEEEec
Confidence 557889999997666553
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.061 Score=63.41 Aligned_cols=228 Identities=15% Similarity=0.231 Sum_probs=126.3
Q ss_pred CceeEcCCCCEEEEEeCCCCc-CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHS-LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
....|.++...+.++...... ..-++....... +.+.+.+.+.. .. ......+.++.+-+
T Consensus 25 ~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~~----~~------------~~~~~~ivs~~yl~-- 85 (928)
T PF04762_consen 25 TATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDG-SVEVLASWDAP----LP------------DDPNDKIVSFQYLA-- 85 (928)
T ss_pred ceEEEecCCCeEEEEECCCCcceEEEEEeeccCC-ceeEEEecccc----CC------------cCCCCcEEEEEecc--
Confidence 566788888888888764321 111233333222 22344432110 00 00123577888888
Q ss_pred CCceEEEEe-CCCcEEEE----eCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEec----------C--
Q 004067 137 SKKKIIMVP-LPDGIYFQ----DLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNL----------L-- 198 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~----d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l----------~-- 198 (776)
|...|++. .+|+|.++ +.++.+.. .+..-+.+ +...+||||+..||++... +|.+|.- .
T Consensus 86 -d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~G-I~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~ 162 (928)
T PF04762_consen 86 -DSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSG-ILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSD 162 (928)
T ss_pred -CCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCc-EEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcc
Confidence 88877765 78999999 66666665 44444443 8889999999999999853 5555432 1
Q ss_pred -CCceeEEeeC---------CCCCce------ecCCcccceec---ccCCcceEEECCCCCeEEEEEecCCCCCeEEEee
Q 004067 199 -INEQRQLTHG---------ANGNTV------THGLAEYIAQE---EMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMH 259 (776)
Q Consensus 199 -~g~~~~lt~~---------~~~~~~------~~~~~~~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 259 (776)
-|+.+.++.+ |..++. ....+ -+-+. .-+....++|-.||+++|..+.+....
T Consensus 163 ~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~------- 234 (928)
T PF04762_consen 163 DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG------- 234 (928)
T ss_pred ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC-ccccCccccCCCceEEEECCCCcEEEEEEEEcCCC-------
Confidence 1222222211 000000 00000 00000 001234788999999998877543211
Q ss_pred cCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceE
Q 004067 260 QGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKL 339 (776)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 339 (776)
.+..+.||+.++ +..-.. -...+....++|-|.|..|+... +..+..
T Consensus 235 -----------------------~~R~iRVy~ReG-~L~stS--------E~v~gLe~~l~WrPsG~lIA~~q-~~~~~~ 281 (928)
T PF04762_consen 235 -----------------------SRRVIRVYSREG-ELQSTS--------EPVDGLEGALSWRPSGNLIASSQ-RLPDRH 281 (928)
T ss_pred -----------------------ceeEEEEECCCc-eEEecc--------ccCCCccCCccCCCCCCEEEEEE-EcCCCc
Confidence 125688998884 333221 12334455689999999887775 444556
Q ss_pred EEEEEECCC
Q 004067 340 KVLKFDIKT 348 (776)
Q Consensus 340 ~l~~~d~~~ 348 (776)
.|..+.-++
T Consensus 282 ~VvFfErNG 290 (928)
T PF04762_consen 282 DVVFFERNG 290 (928)
T ss_pred EEEEEecCC
Confidence 777777654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0064 Score=57.95 Aligned_cols=157 Identities=13% Similarity=0.059 Sum_probs=106.5
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccc-eecCCCCCC----CccCceeCC--CCCEEEEEECCcEEEEec
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPE-LKLSSSSCS----PVIDPHLSS--DGTMIAFVRDCELHVLNL 197 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~-~~l~~~~~~----~~~~~~~Sp--Dg~~la~~~~~~l~~~~l 197 (776)
..+..+.|-| +++.++...+.+|.+|+++.+..+ ..+...... ....-+||| ||..++...+..++.||+
T Consensus 124 g~i~cvew~P---ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~ 200 (370)
T KOG1007|consen 124 GKINCVEWEP---NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDL 200 (370)
T ss_pred CceeeEEEcC---CCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEc
Confidence 4678899999 999999999999999999887763 122221111 234579999 999999999999999998
Q ss_pred CCCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 198 LINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 198 ~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
.+-... .|. +....+++.+-|.|+-+.++....|++
T Consensus 201 RT~~~~~sI~-----------------dAHgq~vrdlDfNpnkq~~lvt~gDdg-------------------------- 237 (370)
T KOG1007|consen 201 RTMKKNNSIE-----------------DAHGQRVRDLDFNPNKQHILVTCGDDG-------------------------- 237 (370)
T ss_pred cchhhhcchh-----------------hhhcceeeeccCCCCceEEEEEcCCCc--------------------------
Confidence 854321 111 111223556779998888776665443
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
.|.+||...-+.-... +.++.+.+..+.|.|--..|+.... .+..+.++.+
T Consensus 238 ---------yvriWD~R~tk~pv~e-------l~~HsHWvW~VRfn~~hdqLiLs~~---SDs~V~Lsca 288 (370)
T KOG1007|consen 238 ---------YVRIWDTRKTKFPVQE-------LPGHSHWVWAVRFNPEHDQLILSGG---SDSAVNLSCA 288 (370)
T ss_pred ---------cEEEEeccCCCccccc-------cCCCceEEEEEEecCccceEEEecC---CCceeEEEec
Confidence 3788887654432222 3678899999999997665555432 3444555554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00057 Score=73.42 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=106.0
Q ss_pred hcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEEC-CcEEEEecC
Q 004067 123 RGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVRD-CELHVLNLL 198 (776)
Q Consensus 123 ~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~-~~l~~~~l~ 198 (776)
+.+.+..+.|++. --.|+.+ +|+.|..||+...+.+ .+..+....++.+.||| ++...+-+.+ +.|-+||+.
T Consensus 132 H~Rs~~~ldfh~t---ep~iliSGSQDg~vK~~DlR~~~S~-~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 132 HERSANKLDFHST---EPNILISGSQDGTVKCWDLRSKKSK-STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred hccceeeeeeccC---CccEEEecCCCceEEEEeeeccccc-ccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 3457888999883 3345554 8889999999998888 66666666789999999 4555555544 457788876
Q ss_pred CCc--eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 INE--QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~g~--~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
--. .++++...+ .+.-+.|+|++.+||....|
T Consensus 208 qp~r~~~k~~AH~G------------------pV~c~nwhPnr~~lATGGRD---------------------------- 241 (839)
T KOG0269|consen 208 QPDRCEKKLTAHNG------------------PVLCLNWHPNREWLATGGRD---------------------------- 241 (839)
T ss_pred CchhHHHHhhcccC------------------ceEEEeecCCCceeeecCCC----------------------------
Confidence 332 233333211 14467799999999876533
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
..+.+||..+++...+.. ......+..+.|-|+-...+..+... .+..|++||+.-.
T Consensus 242 --------K~vkiWd~t~~~~~~~~t-------InTiapv~rVkWRP~~~~hLAtcsmv-~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 242 --------KMVKIWDMTDSRAKPKHT-------INTIAPVGRVKWRPARSYHLATCSMV-VDTSVHVWDVRRP 298 (839)
T ss_pred --------ccEEEEeccCCCccceeE-------EeecceeeeeeeccCccchhhhhhcc-ccceEEEEeeccc
Confidence 347888888766544322 12334577899999987333332222 5678999998653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.002 Score=63.56 Aligned_cols=140 Identities=10% Similarity=0.083 Sum_probs=86.7
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EE-EEe-ccCc
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VI-LVE-ELDS 361 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l-~~~-~~~~ 361 (776)
..|++|...+|.-+.=..+ +..+...+.++.|||..+-+++..+ .+..|.+||...+..+ .+ ++. ....
T Consensus 234 ~~I~lw~~~~g~W~vd~~P-----f~gH~~SVEDLqWSptE~~vfaScS---~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRP-----FTGHTKSVEDLQWSPTEDGVFASCS---CDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred cceEeeeeccCceeecCcc-----ccccccchhhhccCCccCceEEeee---cCceEEEEEecCCCccceeEeeccCCce
Confidence 4578888888765443221 3567788999999998774444332 4567999999887332 22 222 2211
Q ss_pred eeecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCC----ceeeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 362 WVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDING----TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g----~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
-+ ++|..+. ++.+...+| .+-+||+.. .....++.+...+.++. |+|....++..+..++
T Consensus 306 NV------------ISWnr~~~lLasG~DdG--t~~iwDLR~~~~~~pVA~fk~Hk~pItsie-W~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 306 NV------------ISWNRREPLLASGGDDG--TLSIWDLRQFKSGQPVATFKYHKAPITSIE-WHPHEDSVIAASGEDN 370 (440)
T ss_pred ee------------EEccCCcceeeecCCCc--eEEEEEhhhccCCCcceeEEeccCCeeEEE-eccccCceEEeccCCC
Confidence 11 1333332 555556677 777787642 22345555666677765 9988877777776664
Q ss_pred CceeeEEEEEeCC
Q 004067 437 PLESHLYCAKLYP 449 (776)
Q Consensus 437 ~~~~~l~~~~~~~ 449 (776)
++.||.+.+..
T Consensus 371 --QitiWDlsvE~ 381 (440)
T KOG0302|consen 371 --QITIWDLSVEA 381 (440)
T ss_pred --cEEEEEeeccC
Confidence 48999998843
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0019 Score=66.59 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=69.7
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc-ee
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE-QR 203 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~-~~ 203 (776)
.+.+-.|+| ||.-|+.. .++.|.+|.-+|=-.. .+..... .+...+|.|+...++|...+++++-+++-+. +.
T Consensus 106 A~~~gRW~~---dGtgLlt~GEDG~iKiWSrsGMLRS-tl~Q~~~-~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i 180 (737)
T KOG1524|consen 106 AISSGRWSP---DGAGLLTAGEDGVIKIWSRSGMLRS-TVVQNEE-SIRCARWAPNSNSIVFCQGGHISIKPLAANSKII 180 (737)
T ss_pred hhhhcccCC---CCceeeeecCCceEEEEeccchHHH-HHhhcCc-eeEEEEECCCCCceEEecCCeEEEeeccccccee
Confidence 456678999 99999876 7899999987663332 4444433 4889999999999999999999999988543 22
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEE
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFT 245 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~ 245 (776)
+.... . +.+..+.|+|.+..|+..
T Consensus 181 ~WkAH-D-----------------GiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 181 RWRAH-D-----------------GLVLSLSWSTQSNIIASG 204 (737)
T ss_pred EEecc-C-----------------cEEEEeecCccccceeec
Confidence 33221 1 114467799988877653
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0034 Score=60.50 Aligned_cols=136 Identities=11% Similarity=0.048 Sum_probs=92.6
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccc-cccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV-CDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~-~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
.++..+++.-|. +++.++.-.+ .++|++|-.|+-+.+... -+.+.. + +.++.+..+ |.++-+|.+|+-.-
T Consensus 22 ~~e~~V~T~~G~-v~V~V~Gd~~-----~~kpaiiTyhDlglN~~scFq~ff~-~-p~m~ei~~~-fcv~HV~~PGqe~g 92 (326)
T KOG2931|consen 22 CQEHDVETAHGV-VHVTVYGDPK-----GNKPAIITYHDLGLNHKSCFQGFFN-F-PDMAEILEH-FCVYHVDAPGQEDG 92 (326)
T ss_pred ceeeeecccccc-EEEEEecCCC-----CCCceEEEecccccchHhHhHHhhc-C-HhHHHHHhh-eEEEecCCCccccC
Confidence 567777776665 8888887444 256889999985433221 011110 1 124445566 99999999988543
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
...+ ...+....++++.+.+-.+.++. ..+.|.-+|--.|+++-...|..||+++-++|++++...
T Consensus 93 Ap~~----p~~y~yPsmd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~ 158 (326)
T KOG2931|consen 93 APSF----PEGYPYPSMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPC 158 (326)
T ss_pred CccC----CCCCCCCCHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCC
Confidence 3222 22333345777777777777765 446889999999999999999999999999999877643
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0023 Score=61.81 Aligned_cols=215 Identities=14% Similarity=0.027 Sum_probs=119.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEee-cCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVF-SPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.-+|++|++.||-..+. .+|-++...+.+..... ..+ .+-..+....|+|
T Consensus 14 tchAwn~drt~iAv~~~~-----~evhiy~~~~~~~w~~~htls---------------------~Hd~~vtgvdWap-- 65 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNN-----HEVHIYSMLGADLWEPAHTLS---------------------EHDKIVTGVDWAP-- 65 (361)
T ss_pred eeeeecCCCceEEeccCC-----ceEEEEEecCCCCceeceehh---------------------hhCcceeEEeecC--
Confidence 556899999999965442 24555555565522211 100 1123567799999
Q ss_pred CCceEEEEe-CCCcEEEEeC-CCCccce--ecCCCCCCCccCceeCCCCCEEEEEECCcE-EEEecCCCceeEEeeCCCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDL-SCSKPEL--KLSSSSCSPVIDPHLSSDGTMIAFVRDCEL-HVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~-~~~~~~~--~l~~~~~~~~~~~~~SpDg~~la~~~~~~l-~~~~l~~g~~~~lt~~~~~ 211 (776)
.+.+|+.. .+.+-|+|.. ++++.+. .|...... +..+.|||.+.++|.-+...+ -++-.+..+. -.....
T Consensus 66 -~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA-At~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWVsKh-- 140 (361)
T KOG1523|consen 66 -KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA-ATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWVSKH-- 140 (361)
T ss_pred -CCCceeEccCCCCccccccCCCCeeccceeEEEeccc-eeeEeecCcCceEEeccCccEEEEEEEecccc-eehhhh--
Confidence 88888865 7888999988 7776542 22222222 678999999999998776432 2222111110 000000
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
+...-...+..+.|.|++=.|+..+.|.. ... +..|+-+
T Consensus 141 ----------ikkPirStv~sldWhpnnVLlaaGs~D~k-~rV------------------------------fSayIK~ 179 (361)
T KOG1523|consen 141 ----------IKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRV------------------------------FSAYIKG 179 (361)
T ss_pred ----------hCCccccceeeeeccCCcceecccccCcc-eeE------------------------------EEEeeec
Confidence 00000011457789998877765543211 111 2334444
Q ss_pred cCCCce-----EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 292 AAGGPV-----SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 292 ~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
++.+.. ..+.+.+-..+.....+.+..+.|||+|..|+++. .+..+...|..+..
T Consensus 180 Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~----Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 180 VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG----HDSTVSFVDAAGPS 239 (361)
T ss_pred cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec----CCCceEEeecCCCc
Confidence 433221 01111100011224567888999999999999887 56678888887764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.061 Score=57.42 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=38.2
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeE
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQ 204 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~ 204 (776)
+..+++. .++.|+.+|..+|+..-...... .....|. .++..+++.. ++.||.+|.++|+...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W 129 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELW 129 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEee
Confidence 3445544 66789999998887652222211 1122333 3566665543 4679999999998753
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.056 Score=59.71 Aligned_cols=289 Identities=12% Similarity=0.073 Sum_probs=142.5
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..++||+|++.+.-.. ..+|-++...+|+...... + +-..+....+.|.+.
T Consensus 20 ~~avfSnD~k~l~~~~------~~~V~VyS~~Tg~~i~~l~--~---------------------~~a~l~s~~~~~~~~ 70 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT------GNFVKVYSTATGECITSLE--D---------------------HTAPLTSVIVLPSSE 70 (792)
T ss_pred cccccccCCcEEEEee------CCEEEEEecchHhhhhhcc--c---------------------ccCccceeeecCCCc
Confidence 5668999999886332 2479999999988644321 1 012344455555222
Q ss_pred CceEEE-EeCCCcEEEEeCCCCccceecCCCCCCCccCceeCC---CCCEEEEEECCcEEEEecCC----CceeEEeeCC
Q 004067 138 KKKIIM-VPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS---DGTMIAFVRDCELHVLNLLI----NEQRQLTHGA 209 (776)
Q Consensus 138 dg~~l~-~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp---Dg~~la~~~~~~l~~~~l~~----g~~~~lt~~~ 209 (776)
.-..++ -..+|.|.+||-..++.....+.+- ++....+.| |-..++|++..+..+..... ++.+++....
T Consensus 71 ~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~--~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t 148 (792)
T KOG1963|consen 71 NANYLIVCSLDGTIRVWDWSDGELLKTFDNNL--PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLAT 148 (792)
T ss_pred cceEEEEEecCccEEEecCCCcEEEEEEecCC--ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeee
Confidence 212222 2378999999998887762332211 122223322 22255666654433332111 1222221111
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
... -..++..+.+. ...+..++-|..-+.... ..+++
T Consensus 149 ~~~----~~~d~~~~~~~--~~~I~~~~~ge~~~i~~~-------------------------------------~~~~~ 185 (792)
T KOG1963|consen 149 FDS----AKGDFLKEHQE--PKSIVDNNSGEFKGIVHM-------------------------------------CKIHI 185 (792)
T ss_pred ccc----cchhhhhhhcC--CccEEEcCCceEEEEEEe-------------------------------------eeEEE
Confidence 100 00111111111 234555665553332221 34677
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC--Cc---eEEEEEeccCceee
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT--GQ---RKVILVEELDSWVN 364 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~--g~---~~~l~~~~~~~~~~ 364 (776)
|....+........ .-..+...+...++||.++.++..... +.|.+|.--+ ++ .+.+.=+.+..
T Consensus 186 ~~v~~~~~~~~~~~----~~~~Htf~~t~~~~spn~~~~Aa~d~d----GrI~vw~d~~~~~~~~t~t~lHWH~~~V--- 254 (792)
T KOG1963|consen 186 YFVPKHTKHTSSRD----ITVHHTFNITCVALSPNERYLAAGDSD----GRILVWRDFGSSDDSETCTLLHWHHDEV--- 254 (792)
T ss_pred EEecccceeeccch----hhhhhcccceeEEeccccceEEEeccC----CcEEEEeccccccccccceEEEeccccc---
Confidence 77766542211110 001233335778999999988766543 3466665432 11 22222111110
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~ 444 (776)
..-.|++ ++..+++..+.| -|.+|.+++++.+-|..-...+..+. +|||+.. |.....++ .++|..
T Consensus 255 ~~L~fS~--------~G~~LlSGG~E~--VLv~Wq~~T~~kqfLPRLgs~I~~i~-vS~ds~~-~sl~~~DN--qI~li~ 320 (792)
T KOG1963|consen 255 NSLSFSS--------DGAYLLSGGREG--VLVLWQLETGKKQFLPRLGSPILHIV-VSPDSDL-YSLVLEDN--QIHLIK 320 (792)
T ss_pred ceeEEec--------CCceEeecccce--EEEEEeecCCCcccccccCCeeEEEE-EcCCCCe-EEEEecCc--eEEEEe
Confidence 0011222 233455555566 78889999888666776666777765 9999985 44433332 356655
Q ss_pred E
Q 004067 445 A 445 (776)
Q Consensus 445 ~ 445 (776)
.
T Consensus 321 ~ 321 (792)
T KOG1963|consen 321 A 321 (792)
T ss_pred c
Confidence 5
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.004 Score=69.86 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=70.8
Q ss_pred EEEEEeCCCCcCcceEEEEecCCCceEEe-ecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEE-e
Q 004067 68 LITYLLSPDHSLSRKVFSFDPKTCKQELV-FSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMV-P 145 (776)
Q Consensus 68 ~ia~~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~-~ 145 (776)
+|||+....+ +|.+.|.+|..++.+ +... ..+..+.||| ||++|+| +
T Consensus 320 kiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~------------------------~~i~sP~~SP---DG~~vAY~t 368 (912)
T TIGR02171 320 KLAFRNDVTG----NLAYIDYTKGASRAVEIEDT------------------------ISVYHPDISP---DGKKVAFCT 368 (912)
T ss_pred eEEEEEcCCC----eEEEEecCCCCceEEEecCC------------------------CceecCcCCC---CCCEEEEEE
Confidence 6999986332 799999999999888 6432 3677899999 9999999 3
Q ss_pred ------CCCcEEEEeCCCCccc-eecCCCCCCCccCcee--CCCCC-EEEEEECC------------cEEEEecCCC---
Q 004067 146 ------LPDGIYFQDLSCSKPE-LKLSSSSCSPVIDPHL--SSDGT-MIAFVRDC------------ELHVLNLLIN--- 200 (776)
Q Consensus 146 ------~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~--SpDg~-~la~~~~~------------~l~~~~l~~g--- 200 (776)
....||+.||.+.... ..|..- .+..|+| .++|. -|+|+++- --|.+..+.|
T Consensus 369 s~e~~~g~s~vYv~~L~t~~~~~vkl~ve---~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 369 GIEGLPGKSSVYVRNLNASGSGLVKLPVE---NAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred eecCCCCCceEEEEehhccCCCceEeecc---cccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 2345999999876544 133321 2344555 67776 56777651 2666666655
Q ss_pred ceeEEe
Q 004067 201 EQRQLT 206 (776)
Q Consensus 201 ~~~~lt 206 (776)
+.+.|.
T Consensus 446 ~p~kl~ 451 (912)
T TIGR02171 446 TPKKLF 451 (912)
T ss_pred Cchhhh
Confidence 445554
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0049 Score=63.02 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=118.6
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce-eEEeeCCCCCceecCCcccce
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ-RQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~-~~lt~~~~~~~~~~~~~~~~~ 223 (776)
..+.+.+||+......+.+..+.. .+..+.+.-...+||-++. ++|.+..+.++.. +.++..... .
T Consensus 99 ~~~~Vkiwdl~~kl~hr~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-------s---- 166 (673)
T KOG4378|consen 99 QSGCVKIWDLRAKLIHRFLKDHQS-TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-------S---- 166 (673)
T ss_pred cCceeeehhhHHHHHhhhccCCcc-eeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC-------e----
Confidence 566789999986555534555444 4778888888889999987 5899999998865 344443211 1
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
++.+.|||-.+.++....+. ..+.+||..+...+--..
T Consensus 167 ------vRll~ys~skr~lL~~asd~-----------------------------------G~VtlwDv~g~sp~~~~~- 204 (673)
T KOG4378|consen 167 ------VRLLRYSPSKRFLLSIASDK-----------------------------------GAVTLWDVQGMSPIFHAS- 204 (673)
T ss_pred ------EEEeecccccceeeEeeccC-----------------------------------CeEEEEeccCCCcccchh-
Confidence 34677999888887765443 346888887765432211
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCCCCccccCCe
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGG 382 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (776)
..+......++|||-...|+..-. -+..|++||..+... .+|+-+. + ++ .+++.+.+
T Consensus 205 ------~~HsAP~~gicfspsne~l~vsVG---~Dkki~~yD~~s~~s~~~l~y~~-P--------ls----tvaf~~~G 262 (673)
T KOG4378|consen 205 ------EAHSAPCRGICFSPSNEALLVSVG---YDKKINIYDIRSQASTDRLTYSH-P--------LS----TVAFSECG 262 (673)
T ss_pred ------hhccCCcCcceecCCccceEEEec---ccceEEEeecccccccceeeecC-C--------cc----eeeecCCc
Confidence 234445667999998874433321 356799999876543 2332211 1 00 11223333
Q ss_pred -EEEEeccCCceEEEEEeCCCce--eeccccCCeEEEEE
Q 004067 383 -FIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQI 418 (776)
Q Consensus 383 -~~~~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~ 418 (776)
++.+.+..| .|+.+|+.+.+ .+.+..++..|..+
T Consensus 263 ~~L~aG~s~G--~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 263 TYLCAGNSKG--ELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred eEEEeecCCc--eEEEEecccCCCCceEeeecccceeEE
Confidence 444445566 89999987654 23344444445544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.094 Score=56.40 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=68.2
Q ss_pred cChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCC--ceE---EeecCCCCCCCCCCCCHHHHH
Q 004067 41 FSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTC--KQE---LVFSPPDGGLDENNISPEEKL 115 (776)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~--~~~---~l~~~~~~~~~~~~i~~~~~~ 115 (776)
|+.|.+...- .+.+.++.|+|+|..|.-.+.+ ..+.+|.++.. -.. ++-...
T Consensus 257 is~eall~GH---eDWV~sv~W~p~~~~LLSASaD-----ksmiiW~pd~~tGiWv~~vRlGe~g--------------- 313 (764)
T KOG1063|consen 257 ISFEALLMGH---EDWVYSVWWHPEGLDLLSASAD-----KSMIIWKPDENTGIWVDVVRLGEVG--------------- 313 (764)
T ss_pred EehhhhhcCc---ccceEEEEEccchhhheecccC-----cceEEEecCCccceEEEEEEeeccc---------------
Confidence 5566665421 1447899999999666533332 34666666543 221 222100
Q ss_pred HHHHHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEe-CCCCccc-eecCCCCCCCccCceeCCCCCEEEEEE
Q 004067 116 RRERLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQD-LSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVR 188 (776)
Q Consensus 116 ~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d-~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~ 188 (776)
....|...--|+| ++..|+-. ..|.+++|- .+..... .....+.-..+..+.|+|.|..|+-++
T Consensus 314 ------g~a~GF~g~lw~~---n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs 380 (764)
T KOG1063|consen 314 ------GSAGGFWGGLWSP---NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS 380 (764)
T ss_pred ------ccccceeeEEEcC---CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec
Confidence 0124677788999 88766544 667788887 2222222 123333333478899999999888776
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.017 Score=58.74 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=154.1
Q ss_pred CCCceeEcCCCC-EEEEEeCCCCcCcceEEEEecCCCce---EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEE
Q 004067 56 APTSIGFSPDDN-LITYLLSPDHSLSRKVFSFDPKTCKQ---ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYE 131 (776)
Q Consensus 56 ~~~~~~~SpDG~-~ia~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (776)
+++..+|.|--. .++-+.. ..++|-+||+.+.++ .....++ ++..|....
T Consensus 188 Rit~l~fHPt~~~~lva~Gd----K~G~VG~Wn~~~~~~d~d~v~~f~~----------------------hs~~Vs~l~ 241 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGD----KGGQVGLWNFGTQEKDKDGVYLFTP----------------------HSGPVSGLK 241 (498)
T ss_pred ceEEEEecccCcceEEEEcc----CCCcEEEEecCCCCCccCceEEecc----------------------CCccccceE
Confidence 357888999776 4543333 346899999964332 1111110 123577888
Q ss_pred EeecCCCceEEEEeCCCcEEEEeCCCCccceecCCC--CCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce--eEEe
Q 004067 132 WVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSS--SCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ--RQLT 206 (776)
Q Consensus 132 ~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~--~~lt 206 (776)
|+|.++ .+.+..+.+|.|-..|++++... .+-.. .........|+-+.+.++|..+ +++-++|+.++.. ..+.
T Consensus 242 F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 242 FSPANT-SQIYSSSYDGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred ecCCCh-hheeeeccCceeeeeeecchhhH-HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 998443 45555568999999999988765 32222 2223556788888888888876 3456666654432 2222
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
.... ++.++++.|--.+++-....+ ..
T Consensus 320 lh~k------------------KI~sv~~NP~~p~~laT~s~D-----------------------------------~T 346 (498)
T KOG4328|consen 320 LHKK------------------KITSVALNPVCPWFLATASLD-----------------------------------QT 346 (498)
T ss_pred hhhc------------------ccceeecCCCCchheeecccC-----------------------------------cc
Confidence 1111 255677888766554333211 22
Q ss_pred EEEEEcCC--CceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC----CCceE-EEEEe-
Q 004067 287 LGVVSAAG--GPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK----TGQRK-VILVE- 357 (776)
Q Consensus 287 l~~~d~~~--~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~----~g~~~-~l~~~- 357 (776)
+.+||+.. ++.. .+.. ..+...+....|||+|-.|+.+. .+..|.+||.. .-+.. .|...
T Consensus 347 ~kIWD~R~l~~K~sp~lst-------~~HrrsV~sAyFSPs~gtl~TT~----~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLST-------LPHRRSVNSAYFSPSGGTLLTTC----QDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred eeeeehhhhcCCCCcceec-------ccccceeeeeEEcCCCCceEeec----cCCceEEeecccccccCCccceeeccC
Confidence 46777642 2221 2222 46777888999999887666554 34568888873 22222 22222
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCce-eeccccCC-eEEEEEEeecCCCcEEEEEEcc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTC-LGPITEGD-WMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~-~~~lt~~~-~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
....|... | ...|+++..++.. .-.- .|=++|.+++. ..+|-... ..+..+..|.|-+..++.-++.
T Consensus 416 ~t~RwlT~---f-----KA~W~P~~~li~vg~~~r--~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 416 RTGRWLTP---F-----KAAWDPDYNLIVVGRYPR--PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred cccccccc---h-----hheeCCCccEEEEeccCc--ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence 22366532 1 1256666544433 2222 47777777775 23332222 2344555678877655544444
Q ss_pred C
Q 004067 435 D 435 (776)
Q Consensus 435 ~ 435 (776)
.
T Consensus 486 ~ 486 (498)
T KOG4328|consen 486 S 486 (498)
T ss_pred c
Confidence 3
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00016 Score=74.15 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhH-HHHh--CCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW 628 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~-~l~~--~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~ 628 (776)
...|+++++||..+... ...|.. .+.. ++.. .++.|+++|+..... ..+..+.... ...-..+...+..
T Consensus 69 ~~~pt~iiiHGw~~~~~-~~~~~~---~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~n~--~~vg~~la~~l~~ 140 (331)
T PF00151_consen 69 PSKPTVIIIHGWTGSGS-SESWIQ---DMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVANT--RLVGRQLAKFLSF 140 (331)
T ss_dssp TTSEEEEEE--TT-TT--TTTHHH---HHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCeEEEEcCcCCccc-chhHHH---HHHHHHHhhccCCceEEEEcchhhcc--ccccchhhhH--HHHHHHHHHHHHH
Confidence 46799999999765541 223322 1233 3444 589999999852211 1121111110 0012334555666
Q ss_pred HHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC--ceEEEEEcCCCC
Q 004067 629 LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAPVT 673 (776)
Q Consensus 629 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~--~~~~~v~~~~~~ 673 (776)
|.....++.++|.|+|||+||++|..++..... ++..+..+.|..
T Consensus 141 L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 141 LINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred HHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 765556788999999999999999999987655 678888877764
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.011 Score=61.85 Aligned_cols=273 Identities=13% Similarity=0.118 Sum_probs=150.5
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHH-H---HHHHHHHhc--CC---
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEK-L---RRERLRERG--LG--- 126 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~-~---~~~~~~~~~--~~--- 126 (776)
+.+..||||++|.-. |.+.++|.++|++.-.. .+-++.+. .....|+.|.. . ..+|....+ .|
T Consensus 55 t~ik~s~DGqY~lAt----G~YKP~ikvydlanLSLKFERhlDae~--V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLAT----GTYKPQIKVYDLANLSLKFERHLDAEV--VDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred ceeEecCCCcEEEEe----cccCCceEEEEcccceeeeeecccccc--eeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 688999999999743 55668899999875322 11111000 00111222210 0 000000000 01
Q ss_pred -------eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecC
Q 004067 127 -------VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLL 198 (776)
Q Consensus 127 -------~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~ 198 (776)
..++.++ .+.-..++......||+++++.|.--.++....+ .+.....++-...|++.. ++.+-.||..
T Consensus 129 ~~RIP~~GRDm~y~--~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYH--KPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeecCcCCcccccc--CCCccEEEeecCcceEEEEccccccccccccccc-cceeeeecCccceEEecccCceEEEecch
Confidence 1122222 1223333334667899999998875534443322 367788889888888877 5667888877
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
+....-...-... +..-....+..-+.++.|+.||=.++..+..
T Consensus 206 ~ksrv~~l~~~~~------v~s~pg~~~~~svTal~F~d~gL~~aVGts~------------------------------ 249 (703)
T KOG2321|consen 206 DKSRVGTLDAASS------VNSHPGGDAAPSVTALKFRDDGLHVAVGTST------------------------------ 249 (703)
T ss_pred hhhhheeeecccc------cCCCccccccCcceEEEecCCceeEEeeccC------------------------------
Confidence 6654322211110 0011111222235678888888777765422
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe--EEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI--LTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
..+++||+.+.++..+.- -.....+-.+.|-+.+. .++.. +...+.+||..+|+.-...+
T Consensus 250 ------G~v~iyDLRa~~pl~~kd-------h~~e~pi~~l~~~~~~~q~~v~S~-----Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 250 ------GSVLIYDLRASKPLLVKD-------HGYELPIKKLDWQDTDQQNKVVSM-----DKRILKIWDECTGKPMASIE 311 (703)
T ss_pred ------CcEEEEEcccCCceeecc-------cCCccceeeecccccCCCceEEec-----chHHhhhcccccCCceeecc
Confidence 457999999888766522 12234567788877532 44433 34458899999998766555
Q ss_pred eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 357 EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
...+ .+. +.+.+ +.+.+|++..++..+.|.+..=|..
T Consensus 312 pt~~----lND-~C~~p------~sGm~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 312 PTSD----LND-FCFVP------GSGMFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred ccCC----cCc-eeeec------CCceEEEecCCCcceeEEccccCCC
Confidence 4333 111 22211 5568888888888888887644443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0054 Score=60.96 Aligned_cols=162 Identities=10% Similarity=0.079 Sum_probs=103.5
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCC------CCCCCccCceeCCCCCEEEEEEC--CcEEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSS------SSCSPVIDPHLSSDGTMIAFVRD--CELHVL 195 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~------~~~~~~~~~~~SpDg~~la~~~~--~~l~~~ 195 (776)
..+.+..|.| ++...||.. .|..|.+|.+-.+.....++. +...++..+.|.|-...+++.+. +.+.+|
T Consensus 82 ~~vLDi~w~P--fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 82 APVLDIDWCP--FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccCc--cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 4577889999 333444443 667788888754433323332 12235778999999888888764 569999
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
++.+|+...-...+. .+.++.|+-||..|+....|
T Consensus 160 nv~tgeali~l~hpd------------------~i~S~sfn~dGs~l~TtckD--------------------------- 194 (472)
T KOG0303|consen 160 NVGTGEALITLDHPD------------------MVYSMSFNRDGSLLCTTCKD--------------------------- 194 (472)
T ss_pred eccCCceeeecCCCC------------------eEEEEEeccCCceeeeeccc---------------------------
Confidence 999998642111111 14478899999999887754
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
-.|.+||..++++..-.. ......-..+.|--+|+++....++- ...++-+||++.-+
T Consensus 195 ---------KkvRv~dpr~~~~v~e~~-------~heG~k~~Raifl~~g~i~tTGfsr~-seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 195 ---------KKVRVIDPRRGTVVSEGV-------AHEGAKPARAIFLASGKIFTTGFSRM-SERQIALWDPNNLE 252 (472)
T ss_pred ---------ceeEEEcCCCCcEeeecc-------cccCCCcceeEEeccCceeeeccccc-cccceeccCccccc
Confidence 347899999888765421 11122345678999998332222333 45678899986533
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0021 Score=62.46 Aligned_cols=230 Identities=13% Similarity=0.067 Sum_probs=130.1
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCcee
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQR 203 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~ 203 (776)
.++.-..+. |++.+--..++.|.+||..+-+....|+.+ .+.+....| |.+-|+..+ +..+.+||+.+|+..
T Consensus 198 kgVYClQYD----D~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 198 KGVYCLQYD----DEKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CceEEEEec----chhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence 355555554 344333347889999999887766345443 334555555 444333332 346999999999864
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
......-. .+..+.|+. ..++..+.|
T Consensus 271 ~tlihHce-----------------aVLhlrf~n--g~mvtcSkD----------------------------------- 296 (499)
T KOG0281|consen 271 NTLIHHCE-----------------AVLHLRFSN--GYMVTCSKD----------------------------------- 296 (499)
T ss_pred hHHhhhcc-----------------eeEEEEEeC--CEEEEecCC-----------------------------------
Confidence 32221110 133566653 344444433
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..+.|||+++....++.-- +.++...+..+.| |.|+|+.++ .+.+|..|++.+++..+.......+-.
T Consensus 297 -rsiaVWdm~sps~it~rrV-----LvGHrAaVNvVdf--d~kyIVsAS----gDRTikvW~~st~efvRtl~gHkRGIA 364 (499)
T KOG0281|consen 297 -RSIAVWDMASPTDITLRRV-----LVGHRAAVNVVDF--DDKYIVSAS----GDRTIKVWSTSTCEFVRTLNGHKRGIA 364 (499)
T ss_pred -ceeEEEeccCchHHHHHHH-----Hhhhhhheeeecc--ccceEEEec----CCceEEEEeccceeeehhhhcccccce
Confidence 3478888876542221100 2455556666666 556777665 677899999999987655443222111
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
- .. -.++++.+...+. .|.+|+.+.|..-+ |..++.-+.-.. | |.+. ++++..++. +++
T Consensus 365 C----lQ--------Yr~rlvVSGSSDn--tIRlwdi~~G~cLRvLeGHEeLvRciR-F--d~kr-IVSGaYDGk--ikv 424 (499)
T KOG0281|consen 365 C----LQ--------YRDRLVVSGSSDN--TIRLWDIECGACLRVLEGHEELVRCIR-F--DNKR-IVSGAYDGK--IKV 424 (499)
T ss_pred e----hh--------ccCeEEEecCCCc--eEEEEeccccHHHHHHhchHHhhhhee-e--cCce-eeeccccce--EEE
Confidence 0 00 1344555444444 89999998877544 444443333332 4 4565 445555554 899
Q ss_pred EEEEe
Q 004067 443 YCAKL 447 (776)
Q Consensus 443 ~~~~~ 447 (776)
|.+..
T Consensus 425 Wdl~a 429 (499)
T KOG0281|consen 425 WDLQA 429 (499)
T ss_pred Eeccc
Confidence 99886
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.035 Score=53.21 Aligned_cols=174 Identities=11% Similarity=0.155 Sum_probs=104.8
Q ss_pred CCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCC---EEEEEE-CCcEEEEecC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT---MIAFVR-DCELHVLNLL 198 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~---~la~~~-~~~l~~~~l~ 198 (776)
.++.+..|=| =..-++.+ -+..|.+||..+-+....++. + +.+..-+|||=.. .||... +.++.+.|++
T Consensus 102 y~iss~~WyP---~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 102 YAISSAIWYP---IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-E-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred eeeeeeEEee---ecCceeecccccceEEEeecccceeeEEeec-C-ceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 4677777877 33334333 456789999998776523332 3 3478889999444 333332 3479999999
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
+|...-...+... -+.++.|||-..++++....++....|.+.-..
T Consensus 177 SGs~sH~LsGHr~-----------------~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras----------------- 222 (397)
T KOG4283|consen 177 SGSFSHTLSGHRD-----------------GVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS----------------- 222 (397)
T ss_pred CCcceeeeccccC-----------------ceEEEEeccCceeEEEecCCCceEEEEEeeccc-----------------
Confidence 9976544333321 155788999999999876544433333321110
Q ss_pred CCCCCeEEEEEEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 279 GASNVKVRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
..+.+.|...++ ...+.. -+.+.+-+..++|+.||.+++... .+..+..|+..+|+-+.
T Consensus 223 ------gcf~~lD~hn~k~~p~~~~------n~ah~gkvngla~tSd~~~l~~~g----td~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 223 ------GCFRVLDQHNTKRPPILKT------NTAHYGKVNGLAWTSDARYLASCG----TDDRIRVWNMESGRNTL 282 (397)
T ss_pred ------ceeEEeecccCccCccccc------cccccceeeeeeecccchhhhhcc----CccceEEeecccCcccc
Confidence 123333433221 111111 145667788999999999777654 45568889998887543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00056 Score=76.88 Aligned_cols=204 Identities=10% Similarity=0.080 Sum_probs=123.6
Q ss_pred CceeEcCCCCE----EEEEeCCCCcCcceEEEEecCC---CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 58 TSIGFSPDDNL----ITYLLSPDHSLSRKVFSFDPKT---CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 58 ~~~~~SpDG~~----ia~~~~~~~~~~~~l~~~~~~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
..++|++-|.. || +|...++|-+||++. +....+. .+.+.+...|...
T Consensus 68 ~kL~W~~~g~~~~GlIa-----GG~edG~I~ly~p~~~~~~~~~~~l--------------------a~~~~h~G~V~gL 122 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIA-----GGLEDGNIVLYDPASIIANASEEVL--------------------ATKSKHTGPVLGL 122 (1049)
T ss_pred eeeeecccCCCccceee-----ccccCCceEEecchhhccCcchHHH--------------------hhhcccCCceeee
Confidence 78899999988 76 444456899999864 2221111 1222344568889
Q ss_pred EEeecCCCce-EEEEe-CCCcEEEEeCCCCccceecCCC---CCCCccCceeCCCCCEEEEE-EC-CcEEEEecCCCc-e
Q 004067 131 EWVKTSSKKK-IIMVP-LPDGIYFQDLSCSKPELKLSSS---SCSPVIDPHLSSDGTMIAFV-RD-CELHVLNLLINE-Q 202 (776)
Q Consensus 131 ~~sp~~~dg~-~l~~~-~~~~l~~~d~~~~~~~~~l~~~---~~~~~~~~~~SpDg~~la~~-~~-~~l~~~~l~~g~-~ 202 (776)
.|++ .+. .|+.. .+++|++||+..-+. ..+.+ ....+..++|...-+.|+-. +. +..-+||+.-.+ +
T Consensus 123 DfN~---~q~nlLASGa~~geI~iWDlnn~~t--P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 123 DFNP---FQGNLLASGADDGEILIWDLNKPET--PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred eccc---cCCceeeccCCCCcEEEeccCCcCC--CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence 9999 777 56654 678999999987333 33331 11236667777655544333 22 368888888653 2
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCC-eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSK-FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
..++..+.. .....+.|.||.. +|+..+.+...
T Consensus 198 i~ls~~~~~----------------~~~S~l~WhP~~aTql~~As~dd~~------------------------------ 231 (1049)
T KOG0307|consen 198 IKLSDTPGR----------------MHCSVLAWHPDHATQLLVASGDDSA------------------------------ 231 (1049)
T ss_pred cccccCCCc----------------cceeeeeeCCCCceeeeeecCCCCC------------------------------
Confidence 233322210 0134788999975 55555433321
Q ss_pred CCeEEEEEEEcCC--CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 282 NVKVRLGVVSAAG--GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 282 ~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
..|.+||+.- .-.+. +..|+..+..++|++.+..+++.+. ++.+|+.|+.++|+.-
T Consensus 232 ---PviqlWDlR~assP~k~---------~~~H~~GilslsWc~~D~~lllSsg---kD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 232 ---PVIQLWDLRFASSPLKI---------LEGHQRGILSLSWCPQDPRLLLSSG---KDNRIICWNPNTGEVL 289 (1049)
T ss_pred ---ceeEeecccccCCchhh---------hcccccceeeeccCCCCchhhhccc---CCCCeeEecCCCceEe
Confidence 2356677531 11122 2467788999999998765555543 5667999999998853
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.014 Score=58.21 Aligned_cols=206 Identities=16% Similarity=0.135 Sum_probs=116.3
Q ss_pred CCCCCccCceeCC-CCCEEEEEECC-cEEEEecCC-CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEE
Q 004067 167 SSCSPVIDPHLSS-DGTMIAFVRDC-ELHVLNLLI-NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIA 243 (776)
Q Consensus 167 ~~~~~~~~~~~Sp-Dg~~la~~~~~-~l~~~~l~~-g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~ 243 (776)
+..+.+....|+| +...||..++. .|.+|.+-. |..+.++. + -..+.|.. .++..+.|.|--..++
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte-p--vv~L~gH~--------rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE-P--VVELYGHQ--------RRVGLVQWHPTAPNVL 147 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc-c--eEEEeecc--------eeEEEEeecccchhhH
Confidence 3344577899999 44555555543 477776543 33333331 1 01122211 2345678888766665
Q ss_pred EEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc
Q 004067 244 FTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH 323 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp 323 (776)
..+. ....+.+|+..+|+...- ..+...+.+++|+-
T Consensus 148 lsag-----------------------------------~Dn~v~iWnv~tgeali~---------l~hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 148 LSAG-----------------------------------SDNTVSIWNVGTGEALIT---------LDHPDMVYSMSFNR 183 (472)
T ss_pred hhcc-----------------------------------CCceEEEEeccCCceeee---------cCCCCeEEEEEecc
Confidence 5432 115689999999985433 34778999999999
Q ss_pred CCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccCceeecccccccCCCCccccCCeEEEEec--cCCceEEEEEeC
Q 004067 324 GNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE--KTGFRHLYLHDI 400 (776)
Q Consensus 324 Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~g~~~l~~~~~ 400 (776)
||..++.++ .+..|.+||+.+|++..-- .+.+.. + ..+.|.+++.++++. +-...++-+||.
T Consensus 184 dGs~l~Ttc----kDKkvRv~dpr~~~~v~e~~~heG~k---------~--~Raifl~~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 184 DGSLLCTTC----KDKKVRVIDPRRGTVVSEGVAHEGAK---------P--ARAIFLASGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred CCceeeeec----ccceeEEEcCCCCcEeeecccccCCC---------c--ceeEEeccCceeeeccccccccceeccCc
Confidence 999887766 5667999999988754322 111110 0 001222333344442 233468888886
Q ss_pred CCce----eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 401 NGTC----LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 401 ~g~~----~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+.-+ ...|.... .+.- +-+++|.+.||.-+-.++. +.-|.+.
T Consensus 249 ~nl~eP~~~~elDtSn-Gvl~-PFyD~dt~ivYl~GKGD~~--IRYyEit 294 (472)
T KOG0303|consen 249 NNLEEPIALQELDTSN-GVLL-PFYDPDTSIVYLCGKGDSS--IRYFEIT 294 (472)
T ss_pred ccccCcceeEEeccCC-ceEE-eeecCCCCEEEEEecCCcc--eEEEEec
Confidence 5321 22333222 2332 3388888877776655543 5555554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.19 Score=53.59 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=38.2
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEE-ECCcEEEEecCCCceeE
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFV-RDCELHVLNLLINEQRQ 204 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~-~~~~l~~~~l~~g~~~~ 204 (776)
++..+++. .++.||.+|.++|+........ ......|.. ++..+++. .++.|+.+|+++|+.+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee
Confidence 45556554 6789999999888876222221 111222333 23344443 35679999999998653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0048 Score=65.29 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=122.9
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEe-ccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC---
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW-MHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD--- 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~--- 360 (776)
..+.+|+...+....+.. ...+..|+..++. .++...++... -+..|++||+++|..+.+...+.-
T Consensus 95 tTVK~W~~~~~~~~c~st------ir~H~DYVkcla~~ak~~~lvaSgG----LD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMST------IRTHKDYVKCLAYIAKNNELVASGG----LDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred ceEEEeecccCcchhHhh------hhcccchheeeeecccCceeEEecC----CCccEEEEEccCcchhhhhhccccccc
Confidence 557888887664222211 1457778888888 66665444332 456799999999865433221110
Q ss_pred cee--ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 361 SWV--NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 361 ~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
... .-.+.|+ ++..+.+.++++.. -...|.+||..++ +...|-.+...|.-++ .+.||.+++-.++ ++.
T Consensus 165 sl~sG~k~siYS-----LA~N~t~t~ivsGg-tek~lr~wDprt~~kimkLrGHTdNVr~ll-~~dDGt~~ls~sS-Dgt 236 (735)
T KOG0308|consen 165 SLGSGPKDSIYS-----LAMNQTGTIIVSGG-TEKDLRLWDPRTCKKIMKLRGHTDNVRVLL-VNDDGTRLLSASS-DGT 236 (735)
T ss_pred cCCCCCccceee-----eecCCcceEEEecC-cccceEEeccccccceeeeeccccceEEEE-EcCCCCeEeecCC-Cce
Confidence 000 0011111 12223333443321 1237889997655 5677877777777766 8999998665554 433
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhh
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIK 517 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 517 (776)
+.||.+.... ...+..-...+++....+|+-+.+.+..+. ..|++.++.+.+..+.+....++...+.
T Consensus 237 --IrlWdLgqQr------Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd----~~i~~Tdl~n~~~~tlick~daPv~~l~ 304 (735)
T KOG0308|consen 237 --IRLWDLGQQR------CLATYIVHKEGVWALQSSPSFTHVYSGGRD----GNIYRTDLRNPAKSTLICKEDAPVLKLH 304 (735)
T ss_pred --EEeeeccccc------eeeeEEeccCceEEEeeCCCcceEEecCCC----CcEEecccCCchhheEeecCCCchhhhh
Confidence 8888886411 122233334567788888887766554333 4699999887555566665555444332
Q ss_pred ccCCCCceEEEEEcCCC
Q 004067 518 RLQLEPPDIVQIQANDG 534 (776)
Q Consensus 518 ~~~~~~~~~~~~~~~dg 534 (776)
-.. ..+.+++.+.|+
T Consensus 305 ~~~--~~~~~WvtTtds 319 (735)
T KOG0308|consen 305 LHE--HDNSVWVTTTDS 319 (735)
T ss_pred hcc--ccCCceeeeccc
Confidence 211 123345555554
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00031 Score=79.04 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=83.1
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhc-cC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN-CG 615 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~-~~ 615 (776)
++..+|.|...... + .||++++|||.-...-...+ ........+.....+|+.+.||-. -.| |....... .+
T Consensus 97 LylNV~tp~~~~~~-~-~pV~V~iHGG~~~~gs~~~~--~~~~~~~~~~~~~VVvVt~~YRLG-~lG--F~st~d~~~~g 169 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES-K-LPVMVYIHGGGFQFGSASSF--EIISPAYVLLLKDVVVVTINYRLG-PLG--FLSTGDSAAPG 169 (545)
T ss_pred ceEEEeccCCCccC-C-CCEEEEEeCCceeeccccch--hhcCchhccccCCEEEEEecccce-ece--eeecCCCCCCC
Confidence 88999999875211 2 89999999975322110111 111123345567899999999842 111 11111111 24
Q ss_pred CccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCC
Q 004067 616 RIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPV 672 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~ 672 (776)
..-+.|+..|++|+.++ ..-|+++|.|+|||.||..+..++.. ...+|+.+|..++.
T Consensus 170 N~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 170 NLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 44578999999999886 33589999999999999999887763 12467777766654
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00099 Score=65.52 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=60.9
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHH-HHHHHHcCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQGL 634 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~ 634 (776)
.|+++|++.++.. .|..+++.+....+.|+.++++|.+...... ..++++.+. ++.+++..
T Consensus 2 ~lf~~p~~gG~~~-------~y~~la~~l~~~~~~v~~i~~~~~~~~~~~~----------~si~~la~~y~~~I~~~~- 63 (229)
T PF00975_consen 2 PLFCFPPAGGSAS-------SYRPLARALPDDVIGVYGIEYPGRGDDEPPP----------DSIEELASRYAEAIRARQ- 63 (229)
T ss_dssp EEEEESSTTCSGG-------GGHHHHHHHTTTEEEEEEECSTTSCTTSHEE----------SSHHHHHHHHHHHHHHHT-
T ss_pred eEEEEcCCccCHH-------HHHHHHHhCCCCeEEEEEEecCCCCCCCCCC----------CCHHHHHHHHHHHhhhhC-
Confidence 5788999877654 3455677776556999999999876222111 112332222 33333322
Q ss_pred CCCCcEEEEeechHHHHHHHHHhh---CCCceEEEEEcCC
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAP 671 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~---~~~~~~~~v~~~~ 671 (776)
...++.|+|||+||.+|..+|.+ ....+..++++.+
T Consensus 64 -~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 64 -PEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp -SSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred -CCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 23489999999999999999864 2334566666663
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.017 Score=63.50 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=108.4
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC---cEEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC---ELHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~---~l~~~~l~~g~ 201 (776)
.+...+|.| .--+|+.+ ..+.|.+||..-+...-++..+++ +++.+.|.|++.. |++.+ .|-+|+.++..
T Consensus 11 RvKglsFHP---~rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-pVRgv~FH~~qpl--FVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 11 RVKGLSFHP---KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-PVRGVDFHPTQPL--FVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred cccceecCC---CCCEEEEeecCceeeeehhhhhhHHhhhhccCC-ccceeeecCCCCe--EEecCCccEEEEEecccce
Confidence 456778999 77788876 567899999887765535555554 5999999999885 56554 37777766443
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
. ++. +.|.-++ ++...|.+.=-+|+..+.|
T Consensus 85 c---lft------L~GHlDY--------VRt~~FHheyPWIlSASDD--------------------------------- 114 (1202)
T KOG0292|consen 85 C---LFT------LLGHLDY--------VRTVFFHHEYPWILSASDD--------------------------------- 114 (1202)
T ss_pred e---hhh------hccccce--------eEEeeccCCCceEEEccCC---------------------------------
Confidence 2 111 1122222 4577788888888877754
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..|.+|+-.+++...+ ++++.+++...+|.|-...|+..+ -+.+|.+||+.+
T Consensus 115 ---QTIrIWNwqsr~~iav--------ltGHnHYVMcAqFhptEDlIVSaS----LDQTVRVWDisG 166 (1202)
T KOG0292|consen 115 ---QTIRIWNWQSRKCIAV--------LTGHNHYVMCAQFHPTEDLIVSAS----LDQTVRVWDISG 166 (1202)
T ss_pred ---CeEEEEeccCCceEEE--------EecCceEEEeeccCCccceEEEec----ccceEEEEeecc
Confidence 4589999988887665 378999999999999776777665 466799999855
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0053 Score=66.48 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=81.1
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch----hhh--hh
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL----KFE--AS 609 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~----~~~--~~ 609 (776)
.|...++.|.+-. ++ . +.+ |+++..... .+...... ......+||+++.=|. ||..... .|. ..
T Consensus 16 ~i~fev~LP~~WN---gR--~-~~~-GgGG~~G~i-~~~~~~~~-~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~ 85 (474)
T PF07519_consen 16 NIRFEVWLPDNWN---GR--F-LQV-GGGGFAGGI-NYADGKAS-MATALARGYATASTDS-GHQGSAGSDDASFGNNPE 85 (474)
T ss_pred eEEEEEECChhhc---cC--e-EEE-CCCeeeCcc-cccccccc-cchhhhcCeEEEEecC-CCCCCcccccccccCCHH
Confidence 7888999998542 12 2 222 333322111 11110000 2345678999999995 4543321 121 11
Q ss_pred hhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
...+++...+.+...+.+.|.+. ....+.+-+..|.|-||-.++..|.++|+-|.++++.+|..+
T Consensus 86 ~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 86 ALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 22344444566666777777765 335678899999999999999999999999999999998754
|
It also includes several bacterial homologues of unknown function. |
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00029 Score=74.78 Aligned_cols=87 Identities=14% Similarity=0.015 Sum_probs=61.9
Q ss_pred cchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHH
Q 004067 576 TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 655 (776)
Q Consensus 576 ~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 655 (776)
.|..+++.|++.||.+ ..|++|+|...+... .. ...++++.+.++.+.+.. ...++.|+||||||.++..+
T Consensus 109 ~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~-~~-----~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~f 179 (440)
T PLN02733 109 YFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSN-RL-----PETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKCF 179 (440)
T ss_pred HHHHHHHHHHHcCCcc-CCCcccCCCCccccc-cH-----HHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHHH
Confidence 4556788999999876 789999987654311 00 112566777777776653 34689999999999999999
Q ss_pred HhhCCCc----eEEEEEcCC
Q 004067 656 LARFPDV----FQCAVSGAP 671 (776)
Q Consensus 656 a~~~~~~----~~~~v~~~~ 671 (776)
+..+|+. ++..|.+++
T Consensus 180 l~~~p~~~~k~I~~~I~la~ 199 (440)
T PLN02733 180 MSLHSDVFEKYVNSWIAIAA 199 (440)
T ss_pred HHHCCHhHHhHhccEEEECC
Confidence 9887763 466666554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0081 Score=64.24 Aligned_cols=246 Identities=13% Similarity=0.064 Sum_probs=138.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCC---CCCEEEEEECC-cEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS---DGTMIAFVRDC-ELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp---Dg~~la~~~~~-~l~~~~l~~ 199 (776)
.|+.....|| ||++|+.. ..++|.++++..-+....+..++.. +....+|- .-+.||-.+.+ -|+++|+.-
T Consensus 460 ~G~R~~~vSp---~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE-ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 460 FGFRALAVSP---DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE-ILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cceEEEEECC---CcceecccCccCceEEEEehhhhhhhheecccce-eEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 4788999999 99999987 6688999999876655344444443 66667764 22344444433 478888765
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCC--CeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDS--KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (776)
.-..+-|.++... -+.++.|.-.| .+.+.-..|+.
T Consensus 536 ny~l~qtld~HSs----------------sITsvKFa~~gln~~MiscGADks--------------------------- 572 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSS----------------SITSVKFACNGLNRKMISCGADKS--------------------------- 572 (1080)
T ss_pred ccchhhhhccccc----------------ceeEEEEeecCCceEEEeccCchh---------------------------
Confidence 4333323322110 02344454444 12211111111
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 278 AGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..|...-+.+.-...... ...-....++++..-|..++++... .+..|.++|+++|+.+..++.
T Consensus 573 --------imFr~~qk~~~g~~f~r~----t~t~~ktTlYDm~Vdp~~k~v~t~c----QDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 573 --------IMFRVNQKASSGRLFPRH----TQTLSKTTLYDMAVDPTSKLVVTVC----QDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred --------hheehhccccCceecccc----ccccccceEEEeeeCCCcceEEEEe----cccceEEEeccccceeeeecc
Confidence 001111111100000000 0011223466788889888777766 355699999999998887764
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.... .+.. -.+.-|+.++|.... .+. +|.++|.-+|+ ..+.+.+...|.++- |++|=|+|+-.+.+
T Consensus 637 s~~~---eG~l-----IKv~lDPSgiY~atScsdk--tl~~~Df~sgEcvA~m~GHsE~VTG~k-F~nDCkHlISvsgD- 704 (1080)
T KOG1408|consen 637 SRDH---EGDL-----IKVILDPSGIYLATSCSDK--TLCFVDFVSGECVAQMTGHSEAVTGVK-FLNDCKHLISVSGD- 704 (1080)
T ss_pred cccC---CCce-----EEEEECCCccEEEEeecCC--ceEEEEeccchhhhhhcCcchheeeee-ecccchhheeecCC-
Confidence 3210 0000 012445666665542 233 89999966665 678888877788776 99999987666543
Q ss_pred CCceeeEEEEEe
Q 004067 436 GPLESHLYCAKL 447 (776)
Q Consensus 436 ~~~~~~l~~~~~ 447 (776)
+ =+-+|++++
T Consensus 705 g--CIFvW~lp~ 714 (1080)
T KOG1408|consen 705 G--CIFVWKLPL 714 (1080)
T ss_pred c--eEEEEECch
Confidence 3 266777765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.11 Score=55.19 Aligned_cols=231 Identities=12% Similarity=0.059 Sum_probs=141.5
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.++.++.+.|-.-++.-.- ..++|-+||-++.....-+...+ ..+.+..|-+
T Consensus 14 dRVKsVd~HPtePw~la~L-----ynG~V~IWnyetqtmVksfeV~~-----------------------~PvRa~kfia 65 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAAL-----YNGDVQIWNYETQTMVKSFEVSE-----------------------VPVRAAKFIA 65 (794)
T ss_pred CceeeeecCCCCceEEEee-----ecCeeEEEecccceeeeeeeecc-----------------------cchhhheeee
Confidence 3457888888888776322 23468888877765433222111 2455556666
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
-.++++.. .+.+|-+++..+++....+..++. .++.++..|.-.+++-.++. -|-+|+-+.+=....+..+.
T Consensus 66 ---RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-- 139 (794)
T KOG0276|consen 66 ---RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-- 139 (794)
T ss_pred ---ccceEEEecCCceEEEEecccceeeEEeecccc-ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc--
Confidence 77788776 556799999999887745555544 58899999999988887775 35555655553333344332
Q ss_pred ceecCCcccceecccCCcceEEECCC-CCeEEEEEecCC--------CCCeEEEeecCCCCCCCCCcceecCCCCCCC--
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLD-SKFIAFTQVDSS--------EIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS-- 281 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-- 281 (776)
..+ +..++|.|. -++.+..+.|++ ..+.+ ++.+++ .-++-+.|-..|+.
T Consensus 140 ------~Hy--------VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf--Tl~gHe----kGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 140 ------EHY--------VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF--TLEGHE----KGVNCVDYYTGGDKPY 199 (794)
T ss_pred ------ceE--------EEEEEecCCCccceeeeeccccEEEEEcCCCCCce--eeeccc----cCcceEEeccCCCcce
Confidence 222 336778884 456666655543 22222 223433 22344444333322
Q ss_pred ----CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 282 ----NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 282 ----~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
.....+.+||-.++...+. +.++...+..+.|.|.=-+++..+ .++++.+|+..|-..
T Consensus 200 lIsgaDD~tiKvWDyQtk~CV~T--------LeGHt~Nvs~v~fhp~lpiiisgs----EDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSCVQT--------LEGHTNNVSFVFFHPELPIIISGS----EDGTVRIWNSKTYKL 261 (794)
T ss_pred EEecCCCceEEEeecchHHHHHH--------hhcccccceEEEecCCCcEEEEec----CCccEEEecCcceeh
Confidence 2346689999988875443 256777888888988765555444 567788898776443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0034 Score=63.70 Aligned_cols=190 Identities=11% Similarity=0.067 Sum_probs=102.2
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-------CCceEEEE--
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-------TGQRKVIL-- 355 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-------~g~~~~l~-- 355 (776)
..||+|.+.+|+.-.+ ...+-..++.+.||.||+.++..+ ++..+..|.+. ++.++.+.
T Consensus 103 g~lYlWelssG~LL~v--------~~aHYQ~ITcL~fs~dgs~iiTgs----kDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNV--------LSAHYQSITCLKFSDDGSHIITGS----KDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CcEEEEEeccccHHHH--------HHhhccceeEEEEeCCCcEEEecC----CCccEEEEEEEeecccccCCCccceeee
Confidence 4589999999986443 134556789999999999877666 45556666542 11122221
Q ss_pred EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 356 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
.+..-.- .+.....+. .+..+|++..+. .+.+|++..+.. ..++. +..... ...+|.++.+|+- +.
T Consensus 171 ~~HtlsI---TDl~ig~Gg-----~~~rl~TaS~D~--t~k~wdlS~g~LLlti~f-p~si~a-v~lDpae~~~yiG-t~ 237 (476)
T KOG0646|consen 171 SDHTLSI---TDLQIGSGG-----TNARLYTASEDR--TIKLWDLSLGVLLLTITF-PSSIKA-VALDPAERVVYIG-TE 237 (476)
T ss_pred ccCccee---EEEEecCCC-----ccceEEEecCCc--eEEEEEeccceeeEEEec-CCccee-EEEcccccEEEec-CC
Confidence 1111100 000101100 223566665555 888999888752 33332 222233 3478887765544 44
Q ss_pred CCCceeeEEEEEeCC-CCCCc----------cccceeecCCCC---eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 435 DGPLESHLYCAKLYP-DWNHT----------LEAPVKLTNGKG---KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 435 ~~~~~~~l~~~~~~~-~g~~~----------~~~~~~l~~~~~---~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
++ .+|..++.+ .|... .....-+..+.+ +.-+++|-||+.|+-.... +.+.+||....
T Consensus 238 ~G----~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d----g~VcvWdi~S~ 309 (476)
T KOG0646|consen 238 EG----KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED----GKVCVWDIYSK 309 (476)
T ss_pred cc----eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC----CCEEEEecchH
Confidence 33 455554421 11000 001222333322 4456999999877654332 56999998777
Q ss_pred ceeEeec
Q 004067 501 SLVLPLY 507 (776)
Q Consensus 501 ~~~~~l~ 507 (776)
+.++.+.
T Consensus 310 Q~iRtl~ 316 (476)
T KOG0646|consen 310 QCIRTLQ 316 (476)
T ss_pred HHHHHHh
Confidence 7666665
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.048 Score=57.90 Aligned_cols=210 Identities=16% Similarity=0.060 Sum_probs=131.8
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+.+...+++|.+++-.... ...|.++|.++.....-.. .+.....+.++|
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~----~~~v~vid~~~~~~~~~~~------------------------vG~~P~~~~~~~ 125 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGD----SNTVSVIDTATNTVLGSIP------------------------VGLGPVGLAVDP 125 (381)
T ss_pred ccccceeeCCCCCeEEEecCC----CCeEEEEcCcccceeeEee------------------------eccCCceEEECC
Confidence 446788999999987654433 2579999966554432221 012345788999
Q ss_pred cCCCceEEEEeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeC
Q 004067 135 TSSKKKIIMVPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 135 ~~~dg~~l~~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~ 208 (776)
|++.+++.. ++.+.++|..+++....+..+. .....+++|||+++.... ++.|.+++..+....+ ...
T Consensus 126 ---~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~ 199 (381)
T COG3391 126 ---DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV 199 (381)
T ss_pred ---CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--CcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc
Confidence 999999873 3678899988887763322222 236789999999876666 4569999977666554 221
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
........ ....+.++|||++++..-.... ...+.
T Consensus 200 ~~~~~~~~------------~P~~i~v~~~g~~~yV~~~~~~---------------------------------~~~v~ 234 (381)
T COG3391 200 GSLVGVGT------------GPAGIAVDPDGNRVYVANDGSG---------------------------------SNNVL 234 (381)
T ss_pred ccccccCC------------CCceEEECCCCCEEEEEeccCC---------------------------------CceEE
Confidence 11100000 1236789999997765432211 13578
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
+.|..++........ .... .-..+..+|+|+.++..... ...+...|..+.....
T Consensus 235 ~id~~~~~v~~~~~~------~~~~-~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~v~~ 289 (381)
T COG3391 235 KIDTATGNVTATDLP------VGSG-APRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDRVVK 289 (381)
T ss_pred EEeCCCceEEEeccc------cccC-CCCceeECCCCCEEEEEecC---CCeEEEEeCCCCceee
Confidence 888888877765332 1222 33457889999977666433 3457778877755543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.014 Score=61.37 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=46.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++..|-|.+|| .|...+.|.+|.+.||...+.+... .-|..+.|+|
T Consensus 403 Vr~iSvdp~G~wla-----sGsdDGtvriWEi~TgRcvr~~~~d------------------------~~I~~vaw~P-- 451 (733)
T KOG0650|consen 403 VRSISVDPSGEWLA-----SGSDDGTVRIWEIATGRCVRTVQFD------------------------SEIRSVAWNP-- 451 (733)
T ss_pred EEEEEecCCcceee-----ecCCCCcEEEEEeecceEEEEEeec------------------------ceeEEEEecC--
Confidence 57888899999998 3433467999999999875544322 2478899998
Q ss_pred CCce--EEEEeCCCcEEEEeCC
Q 004067 137 SKKK--IIMVPLPDGIYFQDLS 156 (776)
Q Consensus 137 ~dg~--~l~~~~~~~l~~~d~~ 156 (776)
.++ .|+++....+++++..
T Consensus 452 -~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 452 -LSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred -CCCceeEEEEecCceEEeCcc
Confidence 444 4555555556666543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.12 Score=50.04 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=73.6
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCC-CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT-CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+.++.++|||.-..+.-.+..+ .+|.+|++.. |.... . ....+...+....|+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD----~tVR~wevq~~g~~~~-k---------------------a~~~~~~PvL~v~Ws 81 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWD----GTVRIWEVQNSGQLVP-K---------------------AQQSHDGPVLDVCWS 81 (347)
T ss_pred cchheeEeccccCceEEecccC----CceEEEEEecCCcccc-h---------------------hhhccCCCeEEEEEc
Confidence 3458899999444443344444 5688888865 22211 0 011223568899999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCC-EEEEEE--CCcEEEEecCCC
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT-MIAFVR--DCELHVLNLLIN 200 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~-~la~~~--~~~l~~~~l~~g 200 (776)
. ||..++.. -++++.+|||.+++.. ++..+... +...+|-+-.. .++.+. +..|-.||....
T Consensus 82 d---dgskVf~g~~Dk~~k~wDL~S~Q~~-~v~~Hd~p-vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 82 D---DGSKVFSGGCDKQAKLWDLASGQVS-QVAAHDAP-VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred c---CCceEEeeccCCceEEEEccCCCee-eeeecccc-eeEEEEecCCCcceeEecccccceeecccCCC
Confidence 9 99777665 6788999999999888 77666553 77788876555 233332 234777776643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.011 Score=60.12 Aligned_cols=217 Identities=11% Similarity=0.060 Sum_probs=118.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.-+|+|.+++ .|.-..+||+|.+.+|+.-.+.. .+=..+.-..|+.
T Consensus 84 v~al~s~n~G~~l~-----ag~i~g~lYlWelssG~LL~v~~-----------------------aHYQ~ITcL~fs~-- 133 (476)
T KOG0646|consen 84 VHALASSNLGYFLL-----AGTISGNLYLWELSSGILLNVLS-----------------------AHYQSITCLKFSD-- 133 (476)
T ss_pred eeeeecCCCceEEE-----eecccCcEEEEEeccccHHHHHH-----------------------hhccceeEEEEeC--
Confidence 36778899999887 23234689999999998522111 1124688899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCC-------CccceecC--CCCCCCccCceeCCCC--CEEEEEE-CCcEEEEecCCCcee
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSC-------SKPELKLS--SSSCSPVIDPHLSSDG--TMIAFVR-DCELHVLNLLINEQR 203 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~-------~~~~~~l~--~~~~~~~~~~~~SpDg--~~la~~~-~~~l~~~~l~~g~~~ 203 (776)
||..|+.. .|+.+.+|.+.. .... ++- ....-.+..+...+-| .+|+-++ ++-+.+|++..|...
T Consensus 134 -dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~-p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 134 -DGSHIITGSKDGAVLVWLLTDLVSADNDHSVK-PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred -CCcEEEecCCCccEEEEEEEeecccccCCCcc-ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 99988876 778888887532 1111 111 1111124444444432 2343333 345889999988643
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.-...+.. ..+++..|-++.+ |....++......+.....+ ..+
T Consensus 212 lti~fp~s------------------i~av~lDpae~~~-yiGt~~G~I~~~~~~~~~~~-----------------~~~ 255 (476)
T KOG0646|consen 212 LTITFPSS------------------IKAVALDPAERVV-YIGTEEGKIFQNLLFKLSGQ-----------------SAG 255 (476)
T ss_pred EEEecCCc------------------ceeEEEcccccEE-EecCCcceEEeeehhcCCcc-----------------ccc
Confidence 21122221 4577888866654 44433332222111110000 000
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcc--eEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEE
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEE--YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVIL 355 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~ 355 (776)
.....++.+.-+...+ .++.+ .+..++.|-||..|+... .++.+++||..+... +.+.
T Consensus 256 -v~~k~~~~~~t~~~~~---------~Gh~~~~~ITcLais~DgtlLlSGd----~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 256 -VNQKGRHEENTQINVL---------VGHENESAITCLAISTDGTLLLSGD----EDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred -ccccccccccceeeee---------ccccCCcceeEEEEecCccEEEeeC----CCCCEEEEecchHHHHHHHh
Confidence 0011111222222222 34444 788999999998777654 566799999987654 4443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0052 Score=60.40 Aligned_cols=180 Identities=8% Similarity=0.120 Sum_probs=96.6
Q ss_pred EEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCce-EEEEEeccCce
Q 004067 286 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSW 362 (776)
Q Consensus 286 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~ 362 (776)
+|.+||..-..+. .+. =+...+..+.|+|-.. +|+... .+..|++||+.++.+ +.+.-.--.
T Consensus 168 ~i~IWD~~R~~Pv~sms---------wG~Dti~svkfNpvETsILas~~----sDrsIvLyD~R~~~Pl~KVi~~mRT-- 232 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMS---------WGADSISSVKFNPVETSILASCA----SDRSIVLYDLRQASPLKKVILTMRT-- 232 (433)
T ss_pred eeeecccccCCccceee---------cCCCceeEEecCCCcchheeeec----cCCceEEEecccCCccceeeeeccc--
Confidence 4677776543322 221 1233567789999776 444332 345699999988775 223221111
Q ss_pred eecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCc-eeeccccC-CeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGT-CLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~-~~~~lt~~-~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
..++|.+..+.|++ +++ .+||.+|...- .+..+-.+ ...|.++. |||.|+.+ ++++.+..
T Consensus 233 -----------N~IswnPeafnF~~a~ED--~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fsptG~Ef-vsgsyDks-- 295 (433)
T KOG0268|consen 233 -----------NTICWNPEAFNFVAANED--HNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FSPTGQEF-VSGSYDKS-- 295 (433)
T ss_pred -----------cceecCccccceeecccc--ccceehhhhhhcccchhhcccceeEEEec-cCCCcchh-ccccccce--
Confidence 01134444456654 333 38999985421 12222222 23455554 99999974 45555543
Q ss_pred eeEEEEEeCCCCCCccccceeecC-CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
+.||.++- |.. .-...|. .+.+..+.||.|.++++..+..+ +|.+|.....+..-.++
T Consensus 296 IRIf~~~~---~~S---RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~----nvRlWka~Aseklgv~t 354 (433)
T KOG0268|consen 296 IRIFPVNH---GHS---RDIYHTKRMQHVFCVKYSMDSKYIISGSDDG----NVRLWKAKASEKLGVIT 354 (433)
T ss_pred EEEeecCC---Ccc---hhhhhHhhhheeeEEEEeccccEEEecCCCc----ceeeeecchhhhcCCCC
Confidence 77887773 321 1111111 13467789999999887654443 46666554444433344
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.087 Score=51.95 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=41.7
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEE
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQL 205 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~l 205 (776)
+++++++. .++.|+.+|..+|+....... +. ...... ..++..+++.. ++.|+.+|..+|+...-
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-ccccee-eecccccccccceeeeEecccCCcceeee
Confidence 45555554 889999999988887623332 22 122222 34555665555 45799999999987543
|
... |
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0014 Score=63.83 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCc--EEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI--LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~--~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
+..++||+||.... |.......++.....++ .++.+.+|..|.- ..+..... ........+...++.|.
T Consensus 17 ~~~vlvfVHGyn~~------f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~~d~~--~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 17 DKEVLVFVHGYNNS------FEDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYFYDRE--SARFSGPALARFLRDLA 87 (233)
T ss_pred CCeEEEEEeCCCCC------HHHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhhhhhh--hHHHHHHHHHHHHHHHH
Confidence 45799999995433 22222333444444444 7999999976542 11211111 01122445666666666
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhh----CC-----CceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLAR----FP-----DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSS 701 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~----~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (776)
+.. ...+|.|++||||+.+.+.++.. .. ..|..+++.+|-.+...+...
T Consensus 88 ~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~-------------------- 145 (233)
T PF05990_consen 88 RAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQ-------------------- 145 (233)
T ss_pred hcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHH--------------------
Confidence 553 45799999999999999988754 11 246677777776553222111
Q ss_pred hhhhhccCCCcEEEEecCCCCccC
Q 004067 702 VMHHVHKMKGKLLLVHGMIDENVH 725 (776)
Q Consensus 702 ~~~~~~~i~~P~lii~G~~D~~v~ 725 (776)
...+.+...++.+.+...|....
T Consensus 146 -~~~~~~~~~~itvy~s~~D~AL~ 168 (233)
T PF05990_consen 146 -LPDLGSSARRITVYYSRNDRALK 168 (233)
T ss_pred -HHHHhhcCCCEEEEEcCCchHHH
Confidence 11233444678888888886543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0082 Score=63.62 Aligned_cols=208 Identities=10% Similarity=0.077 Sum_probs=116.4
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCcee-CCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCC
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHL-SSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~-SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
+|+.++.. .+..|.+|+...+..- ..+-.+. ..+..+++ -++...+|-.. +.+|++||+.+|..+.+.....-.
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~-DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK-DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhccc-chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 77666654 6778999998766411 1332222 23555566 44544444332 468999999998664332211100
Q ss_pred --ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 213 --TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 213 --~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
....|..+- +.+++-.+.|.-|+ + |+ -...|.+|
T Consensus 163 ~~sl~sG~k~s--------iYSLA~N~t~t~iv--s--------------Gg--------------------tek~lr~w 198 (735)
T KOG0308|consen 163 VNSLGSGPKDS--------IYSLAMNQTGTIIV--S--------------GG--------------------TEKDLRLW 198 (735)
T ss_pred cccCCCCCccc--------eeeeecCCcceEEE--e--------------cC--------------------cccceEEe
Confidence 000011111 11333334342211 1 10 01458999
Q ss_pred EcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccc
Q 004067 291 SAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDC 368 (776)
Q Consensus 291 d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~ 368 (776)
|..+++ ...| .++...+..+..++||..++..+ .++.|.+||+..... ..+.-+....|.-..
T Consensus 199 Dprt~~kimkL---------rGHTdNVr~ll~~dDGt~~ls~s----SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~-- 263 (735)
T KOG0308|consen 199 DPRTCKKIMKL---------RGHTDNVRVLLVNDDGTRLLSAS----SDGTIRLWDLGQQRCLATYIVHKEGVWALQS-- 263 (735)
T ss_pred ccccccceeee---------eccccceEEEEEcCCCCeEeecC----CCceEEeeeccccceeeeEEeccCceEEEee--
Confidence 998865 4444 56778899999999999888776 467899999966543 333445555675321
Q ss_pred cccCCCCccccCCeEEEEeccCCceEEEEEeCCC-ceeeccccCCeEEE
Q 004067 369 FTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCLGPITEGDWMVE 416 (776)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~~~~lt~~~~~~~ 416 (776)
+| +=..+|..+++| .||+.++.. .+.+.|-+.+..+.
T Consensus 264 -~~--------sf~~vYsG~rd~--~i~~Tdl~n~~~~tlick~daPv~ 301 (735)
T KOG0308|consen 264 -SP--------SFTHVYSGGRDG--NIYRTDLRNPAKSTLICKEDAPVL 301 (735)
T ss_pred -CC--------CcceEEecCCCC--cEEecccCCchhheEeecCCCchh
Confidence 01 112566677777 899999877 34444444444443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.065 Score=52.35 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCeeeEEEeecCCCceE-EEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC--cEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKI-IMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~-l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g 200 (776)
......+|+-.+.+|.= ++.. ..|-|+++|+..++....+- +.+..+..+.+.|+...|+..... .|.+|++.+.
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 35667889885554333 3333 55779999999888773333 334458899999998877776543 5999999988
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
....+. ++.. |.. +-+.++-|++||.+|+....
T Consensus 169 ~Cv~Vf-GG~e-----gHr--------deVLSvD~~~~gd~i~ScGm 201 (385)
T KOG1034|consen 169 VCVAVF-GGVE-----GHR--------DEVLSVDFSLDGDRIASCGM 201 (385)
T ss_pred eEEEEe-cccc-----ccc--------CcEEEEEEcCCCCeeeccCC
Confidence 776653 3322 121 11457789999998886543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.17 Score=58.29 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=117.4
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+.++.|--|+..|.+....+ .|.+.|+++.....+...+ .||...+|||
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G-----~iilvd~et~~~eivg~vd------------------------~GI~aaswS~ 119 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALG-----DIILVDPETLELEIVGNVD------------------------NGISAASWSP 119 (1265)
T ss_pred cceEEEEEecccceEEEEecCC-----cEEEEcccccceeeeeecc------------------------CceEEEeecC
Confidence 3556777788888888776533 5888899888776666433 4899999999
Q ss_pred cCCCceEEEEeCC-CcEEEEeCC------------------------CCccceecCCCCC--------------------
Q 004067 135 TSSKKKIIMVPLP-DGIYFQDLS------------------------CSKPELKLSSSSC-------------------- 169 (776)
Q Consensus 135 ~~~dg~~l~~~~~-~~l~~~d~~------------------------~~~~~~~l~~~~~-------------------- 169 (776)
|++.+++... .+|++++-+ |.+.+ ++-...+
T Consensus 120 ---Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeT-qfrgs~gr~~~~~~~~~ek~~~~~~~~ 195 (1265)
T KOG1920|consen 120 ---DEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKET-QFRGSEGRQAARQKIEKEKALEQIEQD 195 (1265)
T ss_pred ---CCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccce-eeecchhhhcccccccccccccchhhc
Confidence 9999998854 445443320 11111 1110000
Q ss_pred CCccCceeCCCCCEEEEEE-----C-CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEE
Q 004067 170 SPVIDPHLSSDGTMIAFVR-----D-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIA 243 (776)
Q Consensus 170 ~~~~~~~~SpDg~~la~~~-----~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~ 243 (776)
..-..+.|--||+++|... + ..|-+|+-+ |.... +..+.. .....++|-|.|..|+
T Consensus 196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-~se~~~----------------~l~~~LsWkPsgs~iA 257 (1265)
T KOG1920|consen 196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-TSEPVE----------------GLQHSLSWKPSGSLIA 257 (1265)
T ss_pred cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc-ccCccc----------------ccccceeecCCCCeEe
Confidence 0112378888998888743 2 356666655 32211 111110 1123688999999988
Q ss_pred EEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc
Q 004067 244 FTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH 323 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp 323 (776)
....+.+.. .|..+..++-+.-.+.++ .+.....+..++|..
T Consensus 258 ~iq~~~sd~---------------------------------~IvffErNGL~hg~f~l~-----~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 258 AIQCKTSDS---------------------------------DIVFFERNGLRHGEFVLP-----FPLDEKEVEELAWNS 299 (1265)
T ss_pred eeeecCCCC---------------------------------cEEEEecCCccccccccC-----CcccccchheeeecC
Confidence 776543321 244444444333222221 012222378899999
Q ss_pred CCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 324 GNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 324 Dg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
++..|+...... ....|.+|-...-.+
T Consensus 300 ~sdiLAv~~~~~-e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 300 NSDILAVVTSNL-ENSLVQLWTTGNYHW 326 (1265)
T ss_pred CCCceeeeeccc-ccceEEEEEecCeEE
Confidence 999777654333 233477776655443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.034 Score=51.98 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=130.7
Q ss_pred CceEEEEe-CCCcEEEEeCCCCcc-c--eecCCCCCCCccCceeCC--CCCEEEEEE-CCcEEEEecCCCceeEEeeCCC
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKP-E--LKLSSSSCSPVIDPHLSS--DGTMIAFVR-DCELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~-~--~~l~~~~~~~~~~~~~Sp--Dg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~ 210 (776)
=|++|+.. .|+.|.+..+..+.. . ..|+.+. +++..+.|.- -|..||..+ ++++.+|.-++|.-.++.....
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~-GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~ 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS-GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCC-CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh
Confidence 47788865 566677666654432 2 2455444 3577778865 788888776 5688999888885554432211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCC--eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSK--FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
.. .-++.++|.|.+- .|+..+.| +.+.|.
T Consensus 101 h~---------------~SVNsV~wapheygl~LacasSD----------------------------------G~vsvl 131 (299)
T KOG1332|consen 101 HS---------------ASVNSVAWAPHEYGLLLACASSD----------------------------------GKVSVL 131 (299)
T ss_pred hc---------------ccceeecccccccceEEEEeeCC----------------------------------CcEEEE
Confidence 10 0145778988754 44444432 225566
Q ss_pred EEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccC---Ce-----------EEEEEEeecCceEEEEEEECCCCce--
Q 004067 289 VVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHG---NI-----------LTAQVLNRSQTKLKVLKFDIKTGQR-- 351 (776)
Q Consensus 289 ~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpD---g~-----------~l~~~~~~~~~~~~l~~~d~~~g~~-- 351 (776)
.++.+++... .+. ..+.-.+..++|.|- |. .++. +..+..+.+|+.+.+..
T Consensus 132 ~~~~~g~w~t~ki~--------~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS----gGcDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 132 TYDSSGGWTTSKIV--------FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS----GGCDNLVKIWKFDSDSWKL 199 (299)
T ss_pred EEcCCCCccchhhh--------hccccccceeeecCcCCCccccccCcccccceeec----cCCccceeeeecCCcchhh
Confidence 6666643322 221 345666788999996 52 2221 12344566666666532
Q ss_pred -EEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce--eeccccCCeEEEEEEeecCCCcEE
Q 004067 352 -KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQV 428 (776)
Q Consensus 352 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~~~~s~dg~~i 428 (776)
+.|..+. .|+.+ -.+.|.- ..+...+.+...+|.--||..+.+++. .+.|......+... +||..|..|
T Consensus 200 e~~l~~H~--dwVRD-VAwaP~~----gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v-SWS~sGn~L 271 (299)
T KOG1332|consen 200 ERTLEGHK--DWVRD-VAWAPSV----GLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV-SWSLSGNIL 271 (299)
T ss_pred hhhhhhcc--hhhhh-hhhcccc----CCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE-EEeccccEE
Confidence 2233332 23321 2233321 112334555567884444444433332 33444434445554 499999977
Q ss_pred EEEEccCCCceeeEEEEEeCCCCC
Q 004067 429 YFTGTLDGPLESHLYCAKLYPDWN 452 (776)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~g~ 452 (776)
.+.... +.+.||+=++ +|+
T Consensus 272 aVs~Gd---Nkvtlwke~~--~Gk 290 (299)
T KOG1332|consen 272 AVSGGD---NKVTLWKENV--DGK 290 (299)
T ss_pred EEecCC---cEEEEEEeCC--CCc
Confidence 766544 3478998887 553
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.048 Score=52.30 Aligned_cols=137 Identities=12% Similarity=0.135 Sum_probs=86.1
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCc
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSK 159 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~ 159 (776)
..|.+||..+-+....+..++ .+.+-.|||-+..-..|+.. .+.+|.+.|+.+|.
T Consensus 124 htlKVWDtnTlQ~a~~F~me~------------------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFKMEG------------------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ceEEEeecccceeeEEeecCc------------------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 579999988877666665433 56777888844333344444 56789999999987
Q ss_pred cceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecC--CCceeEEeeCC-CCCceecCCcccceecccCCcceEE
Q 004067 160 PELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLL--INEQRQLTHGA-NGNTVTHGLAEYIAQEEMDRKTGYW 234 (776)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~--~g~~~~lt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (776)
-.-.|..+.. .+..+.|||...+++++.. +.+.+||+. +|-.+-|.... ...++.. ..-...+.+.+++
T Consensus 180 ~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-----~n~ah~gkvngla 253 (397)
T KOG4283|consen 180 FSHTLSGHRD-GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-----TNTAHYGKVNGLA 253 (397)
T ss_pred ceeeeccccC-ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-----ccccccceeeeee
Confidence 6624544443 4888999999999999864 456666653 45444432211 1111111 0011124467899
Q ss_pred ECCCCCeEEEEEe
Q 004067 235 WSLDSKFIAFTQV 247 (776)
Q Consensus 235 wspDg~~l~~~~~ 247 (776)
|+.||.+++....
T Consensus 254 ~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 254 WTSDARYLASCGT 266 (397)
T ss_pred ecccchhhhhccC
Confidence 9999999886543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.16 Score=55.84 Aligned_cols=266 Identities=14% Similarity=0.052 Sum_probs=151.1
Q ss_pred CceEEEEeCCCcEEEEeCCCCcccee-cCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCcee
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPELK-LSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~~~-l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
||..+.-..+..|.+||...+..... +..+.+ .+....+..-+..|+-.+ +..+.+||..+|+...........
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st--- 293 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS--- 293 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCC-CceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce---
Confidence 35544445667788999999887733 444443 477777765344444444 567999999999887664432210
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
....+-+...++-.+.| ..|.+|++.++
T Consensus 294 ----------------v~~~~~~~~~~~sgs~D------------------------------------~tVkVW~v~n~ 321 (537)
T KOG0274|consen 294 ----------------VRCLTIDPFLLVSGSRD------------------------------------NTVKVWDVTNG 321 (537)
T ss_pred ----------------EEEEEccCceEeeccCC------------------------------------ceEEEEeccCc
Confidence 01112222222221111 56899999988
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
....+. .++...+..+... +..++..+ .+..|.+||+.+++. +.+..+......-
T Consensus 322 ~~l~l~--------~~h~~~V~~v~~~--~~~lvsgs----~d~~v~VW~~~~~~cl~sl~gH~~~V~sl---------- 377 (537)
T KOG0274|consen 322 ACLNLL--------RGHTGPVNCVQLD--EPLLVSGS----YDGTVKVWDPRTGKCLKSLSGHTGRVYSL---------- 377 (537)
T ss_pred ceEEEe--------ccccccEEEEEec--CCEEEEEe----cCceEEEEEhhhceeeeeecCCcceEEEE----------
Confidence 876662 2366777777776 55666666 344799999998775 3444433322210
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCc-ee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCC
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGT-CL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 452 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~ 452 (776)
..++...++...-++ .|..||+.++ +. ..+..+..-+..+ ...++ ++..+..++. +++|+... ++
T Consensus 378 --~~~~~~~~~Sgs~D~--~IkvWdl~~~~~c~~tl~~h~~~v~~l---~~~~~-~Lvs~~aD~~--Ik~WD~~~---~~ 444 (537)
T KOG0274|consen 378 --IVDSENRLLSGSLDT--TIKVWDLRTKRKCIHTLQGHTSLVSSL---LLRDN-FLVSSSADGT--IKLWDAEE---GE 444 (537)
T ss_pred --EecCcceEEeeeecc--ceEeecCCchhhhhhhhcCCccccccc---ccccc-eeEecccccc--EEEeeccc---Cc
Confidence 111113555555554 8999999988 43 3444444333332 23344 4555555544 88997764 32
Q ss_pred CccccceeecCC--CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 453 HTLEAPVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 453 ~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
..+.+... .++..+.+. +..++.+.... .+.++|...++..+.+
T Consensus 445 ----~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~---~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 445 ----CLRTLEGRHVGGVSALALG---KEEILCSSDDG---SVKLWDLRSGTLIRTL 490 (537)
T ss_pred ----eeeeeccCCcccEEEeecC---cceEEEEecCC---eeEEEecccCchhhhh
Confidence 34445442 234344444 44444444433 4777788888876655
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.087 Score=50.59 Aligned_cols=288 Identities=11% Similarity=0.060 Sum_probs=146.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-----CCCcE--EEEeCCCCccceecCCCCCCCccCceeCCCCC----EEEEEECCcEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-----LPDGI--YFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT----MIAFVRDCELH 193 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-----~~~~l--~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~----~la~~~~~~l~ 193 (776)
....+..||--...+-+|+.. .++.| ...|.++++....-+....-++....|.||.+ .|+-++...|.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LR 124 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLR 124 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEE
Confidence 345667787432234556665 33444 44565666665122211122366789999885 33344444444
Q ss_pred EEec--CCCceeEE--eeCCCCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 194 VLNL--LINEQRQL--THGANGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 194 ~~~l--~~g~~~~l--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
+|.+ +.++.+.. ..+....... ....++-|.- |-+.|...+.|
T Consensus 125 lWri~~ee~~~~~~~~L~~~kns~~~------------aPlTSFDWne~dp~~igtSSiD-------------------- 172 (364)
T KOG0290|consen 125 LWRIGDEESRVELQSVLNNNKNSEFC------------APLTSFDWNEVDPNLIGTSSID-------------------- 172 (364)
T ss_pred EEeccCcCCceehhhhhccCcccccC------------CcccccccccCCcceeEeeccc--------------------
Confidence 4444 34443321 1111111111 1234556654 44455444433
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEE-EEEeecCceEEEEEEECC
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTA-QVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~l~~~d~~ 347 (776)
..--+||+++|..-.+.+ ++..++..+.+++|+.+|..++ .+. .++.+.++|+.
T Consensus 173 ----------------TTCTiWdie~~~~~~vkT-----QLIAHDKEV~DIaf~~~s~~~FASvg----aDGSvRmFDLR 227 (364)
T KOG0290|consen 173 ----------------TTCTIWDIETGVSGTVKT-----QLIAHDKEVYDIAFLKGSRDVFASVG----ADGSVRMFDLR 227 (364)
T ss_pred ----------------CeEEEEEEeeccccceee-----EEEecCcceeEEEeccCccceEEEec----CCCcEEEEEec
Confidence 234688888873211111 1256788899999999887443 333 45668889987
Q ss_pred CCceE-EEEEeccCceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCC--CceeeccccCCeEEEEEEeecC
Q 004067 348 TGQRK-VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDIN--GTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 348 ~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~--g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
.-+-. .+.+...+. .+.. .++|......|.+. .-+...+.+.|.. ......|..+...|.++. |.|
T Consensus 228 ~leHSTIIYE~p~~~----~pLl-----RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIa-WaP 297 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPS----TPLL-----RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIA-WAP 297 (364)
T ss_pred ccccceEEecCCCCC----Ccce-----eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceE-ecC
Confidence 76643 445543320 0000 01222222111111 1122356666643 344567777777787775 999
Q ss_pred CCcEEEEEEccCCCceeeEEEEEeCCCCCCc-cccceeecCCCCeEEEEEcCC-cCEEEEEe
Q 004067 424 ASGQVYFTGTLDGPLESHLYCAKLYPDWNHT-LEAPVKLTNGKGKHVAVLDHN-MRNFVDFH 483 (776)
Q Consensus 424 dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~l~~~~~~~~~~~spd-g~~l~~~~ 483 (776)
..+.-+.++..+. +.-||.++-- ...+ ..++..-+.+..++.++|++. +..++..+
T Consensus 298 hS~~hictaGDD~--qaliWDl~q~--~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 298 HSSSHICTAGDDC--QALIWDLQQM--PRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred CCCceeeecCCcc--eEEEEecccc--cccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 8887788877664 3678888741 1100 011222233334677888854 33444443
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0068 Score=55.64 Aligned_cols=108 Identities=20% Similarity=0.143 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC-CCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA-RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g-~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
-.|||+-| .+..... .....++..++.+.+|..+.+-++.+- ++|.. .+ ..+.+|+..+++++.-..
T Consensus 37 ~~vvfiGG-LgdgLl~---~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~---sl-----k~D~edl~~l~~Hi~~~~ 104 (299)
T KOG4840|consen 37 VKVVFIGG-LGDGLLI---CLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF---SL-----KDDVEDLKCLLEHIQLCG 104 (299)
T ss_pred EEEEEEcc-cCCCccc---cccHHHHHHHHhhccceeeeeeccccccccccc---cc-----cccHHHHHHHHHHhhccC
Confidence 35666655 3333221 223456788899999999999887542 13311 11 235788999999876554
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCCcc
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~~~ 676 (776)
. ...|+++|||-|..-.++++.. .+..+.++|+.+|+.|-.
T Consensus 105 f--St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 105 F--STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred c--ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 2 3489999999999999998843 466789999999998854
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.018 Score=57.13 Aligned_cols=158 Identities=11% Similarity=0.110 Sum_probs=96.0
Q ss_pred eeEEEeecCCCceEEEEeCCCcEEEEeCCCCccc---eecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCce
Q 004067 128 TRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPE---LKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQ 202 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~---~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~ 202 (776)
....||| ...|+.+--.-...||+|...+|... .+++.+. ..+..++|||..+.+.+.. ++-|.+||...+..
T Consensus 215 y~LdWSp-~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 215 YGLDWSP-IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT-KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred eeeeccc-ccccccccCccccceEeeeeccCceeecCccccccc-cchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 4678998 33343221113357999988887654 1444433 3588899999998887765 45699999988743
Q ss_pred e--EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 203 R--QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 203 ~--~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+ ..+..... -++.++|+-+-..|++...+
T Consensus 293 ~~~~~~kAh~s-----------------DVNVISWnr~~~lLasG~Dd-------------------------------- 323 (440)
T KOG0302|consen 293 KAAVSTKAHNS-----------------DVNVISWNRREPLLASGGDD-------------------------------- 323 (440)
T ss_pred cceeEeeccCC-----------------ceeeEEccCCcceeeecCCC--------------------------------
Confidence 2 22221111 05578898887766654432
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..+.+||+..-+..+ +-..+..+...|+.+.|+|....++.++. .+.+|.+||+..
T Consensus 324 ----Gt~~iwDLR~~~~~~-----pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiWDlsv 379 (440)
T KOG0302|consen 324 ----GTLSIWDLRQFKSGQ-----PVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIWDLSV 379 (440)
T ss_pred ----ceEEEEEhhhccCCC-----cceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEEEeec
Confidence 346788876433220 00012456778999999997653333322 455688899854
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.048 Score=53.22 Aligned_cols=199 Identities=8% Similarity=0.016 Sum_probs=103.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.++|.||.++|+.+.+.. ..|+.++.+|.-.+++.-. . ....-...+..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~----~~i~els~~G~vlr~i~l~-g----------------------~~D~EgI~y~g-- 74 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEP----GEIYELSLDGKVLRRIPLD-G----------------------FGDYEGITYLG-- 74 (248)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEETT--EEEEEE-S-S-----------------------SSEEEEEE-S--
T ss_pred ccccEEcCCCCeEEEEECCC----CEEEEEcCCCCEEEEEeCC-C----------------------CCCceeEEEEC--
Confidence 58999999999998887755 4699999876555555421 0 12345677777
Q ss_pred CCceEEEEe-CCCcEEEEeCCC--Cccc----e--ecCCC--CCCCccCceeCCCCCEEEEEECC---cEEEEecCC--C
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSC--SKPE----L--KLSSS--SCSPVIDPHLSSDGTMIAFVRDC---ELHVLNLLI--N 200 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~--~~~~----~--~l~~~--~~~~~~~~~~SpDg~~la~~~~~---~l~~~~l~~--g 200 (776)
+|++++.. .++.|+++++.. .... . .+... .......++|.|.+++|..+... .||.++... .
T Consensus 75 -~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 75 -NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp -TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred -CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc
Confidence 78766666 467788888733 2211 0 11111 11125679999999998888764 377776522 1
Q ss_pred ceeEEeeCCCCCceecCCcccce-ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIA-QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
..... ... .|.. ...+.-..++++.|....|+..+...
T Consensus 154 ~~~~~-~~~----------~~~~~~~~~~d~S~l~~~p~t~~lliLS~es------------------------------ 192 (248)
T PF06977_consen 154 DLFVS-DDQ----------DLDDDKLFVRDLSGLSYDPRTGHLLILSDES------------------------------ 192 (248)
T ss_dssp --EEE-E-H----------HHH-HT--SS---EEEEETTTTEEEEEETTT------------------------------
T ss_pred ceeec-ccc----------ccccccceeccccceEEcCCCCeEEEEECCC------------------------------
Confidence 11111 100 0000 00011145788999988888877322
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
..|..+|.++.-...+.+..+...+.........+++.+||+ |++++
T Consensus 193 -----~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvs 239 (248)
T PF06977_consen 193 -----RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVS 239 (248)
T ss_dssp -----TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE
T ss_pred -----CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEc
Confidence 246777766665566665432211122223456799999996 55554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=70.87 Aligned_cols=116 Identities=21% Similarity=0.202 Sum_probs=70.2
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccC----CccHHHHHHHHHHH
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG----RIDAEDQLTGAEWL 629 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~----~~~~~D~~~~i~~l 629 (776)
.|++|++-|- +... ..+.. .........+.|-.++++.+|-.|.|-. +......++. .+.++|+..+++++
T Consensus 29 gpifl~~ggE-~~~~--~~~~~-~~~~~~lA~~~~a~~v~lEHRyYG~S~P-~~~~s~~nL~yLt~~QALaD~a~F~~~~ 103 (434)
T PF05577_consen 29 GPIFLYIGGE-GPIE--PFWIN-NGFMWELAKEFGALVVALEHRYYGKSQP-FGDLSTENLRYLTSEQALADLAYFIRYV 103 (434)
T ss_dssp SEEEEEE--S-S-HH--HHHHH--HHHHHHHHHHTEEEEEE--TTSTTB-T-TGGGGGSTTTC-SHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-Cccc--hhhhc-CChHHHHHHHcCCcEEEeehhhhcCCCC-ccccchhhHHhcCHHHHHHHHHHHHHHH
Confidence 5888887552 3221 11111 1133445557799999999998887742 2222222222 23477888888888
Q ss_pred HHcC-CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 630 IKQG-LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 630 ~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
..+. ..+..+++++|.||||.+|.++-.++|++|.++++.++...
T Consensus 104 ~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 104 KKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 8653 33556999999999999999999999999999998876654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.18 Score=49.24 Aligned_cols=152 Identities=11% Similarity=0.154 Sum_probs=92.5
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccce-ecCC--CCCCCccCceeCC--CCCEEEEEEC--CcEEEEecC
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPEL-KLSS--SSCSPVIDPHLSS--DGTMIAFVRD--CELHVLNLL 198 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~-~l~~--~~~~~~~~~~~Sp--Dg~~la~~~~--~~l~~~~l~ 198 (776)
.+.+...++ .+|++...+.||+|.....-... .+.. ++.+ --..+| +...|||-.. ++|-++++.
T Consensus 96 ~I~~V~l~r-----~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG---lC~~~~~~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 96 EIKAVKLRR-----DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG---LCSLCPTSNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred ceeeEEEcC-----CeEEEEecCeEEEEEcCCChhheeeeecccCCCc---eEeecCCCCceEEEcCCCccceEEEEEhh
Confidence 466666654 67888889999999876432221 2211 1211 223333 4446666543 578888887
Q ss_pred CCcee--EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 INEQR--QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~g~~~--~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
..... .+...... .+.-++.+-+|..||..+..+
T Consensus 168 ~~~~~~p~~I~AH~s-----------------~Iacv~Ln~~Gt~vATaStkG--------------------------- 203 (346)
T KOG2111|consen 168 STKPNAPSIINAHDS-----------------DIACVALNLQGTLVATASTKG--------------------------- 203 (346)
T ss_pred hcCcCCceEEEcccC-----------------ceeEEEEcCCccEEEEeccCc---------------------------
Confidence 65542 22222211 133567888999888776422
Q ss_pred CCCCCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
.-|.+||..+|+... +.-. .....++.++||||+.+|+..+ +.++|.++.+..
T Consensus 204 --------TLIRIFdt~~g~~l~E~RRG-------~d~A~iy~iaFSp~~s~LavsS----dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 204 --------TLIRIFDTEDGTLLQELRRG-------VDRADIYCIAFSPNSSWLAVSS----DKGTLHIFSLRD 257 (346)
T ss_pred --------EEEEEEEcCCCcEeeeeecC-------CchheEEEEEeCCCccEEEEEc----CCCeEEEEEeec
Confidence 458999999887543 3221 2235789999999999998887 444566666543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.072 Score=54.85 Aligned_cols=180 Identities=9% Similarity=0.050 Sum_probs=107.7
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceee
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 364 (776)
..+.+||+..+.+.+. +.++...+..+.+--...+|+.++ ..++|.+..++++....-+.+....-+
T Consensus 101 ~~Vkiwdl~~kl~hr~--------lkdh~stvt~v~YN~~DeyiAsvs----~gGdiiih~~~t~~~tt~f~~~sgqsv- 167 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRF--------LKDHQSTVTYVDYNNTDEYIASVS----DGGDIIIHGTKTKQKTTTFTIDSGQSV- 167 (673)
T ss_pred ceeeehhhHHHHHhhh--------ccCCcceeEEEEecCCcceeEEec----cCCcEEEEecccCccccceecCCCCeE-
Confidence 3478899886554443 245666777777766666777776 345688888888765443333322111
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee--ccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG--PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~--~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
.--.|++. ...++-+...+| .+-+||..|..+. ....+...-.++ .|+|....|+++-..+. +|
T Consensus 168 Rll~ys~s-------kr~lL~~asd~G--~VtlwDv~g~sp~~~~~~~HsAP~~gi-cfspsne~l~vsVG~Dk----ki 233 (673)
T KOG4378|consen 168 RLLRYSPS-------KRFLLSIASDKG--AVTLWDVQGMSPIFHASEAHSAPCRGI-CFSPSNEALLVSVGYDK----KI 233 (673)
T ss_pred EEeecccc-------cceeeEeeccCC--eEEEEeccCCCcccchhhhccCCcCcc-eecCCccceEEEecccc----eE
Confidence 01123332 222454555667 6777787765432 222222222344 49999888887776653 45
Q ss_pred EEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 443 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
+..+. ... +...+|+-......++|+++|.+|+...+. ++|+.+|...-
T Consensus 234 ~~yD~--~s~---~s~~~l~y~~Plstvaf~~~G~~L~aG~s~----G~~i~YD~R~~ 282 (673)
T KOG4378|consen 234 NIYDI--RSQ---ASTDRLTYSHPLSTVAFSECGTYLCAGNSK----GELIAYDMRST 282 (673)
T ss_pred EEeec--ccc---cccceeeecCCcceeeecCCceEEEeecCC----ceEEEEecccC
Confidence 55554 211 245677766666789999999988877554 57999997643
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.015 Score=56.65 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=58.1
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
|..++.+++-|+--.+.-....+ ..|.+|++.+.....++.--. .+..-+.+..|+
T Consensus 135 G~sINeik~~p~~~qlvls~SkD----~svRlwnI~~~~Cv~VfGG~e--------------------gHrdeVLSvD~~ 190 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKD----HSVRLWNIQTDVCVAVFGGVE--------------------GHRDEVLSVDFS 190 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCC----ceEEEEeccCCeEEEEecccc--------------------cccCcEEEEEEc
Confidence 35578999999986665443323 579999999998877774111 112357899999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCcc
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKP 160 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~ 160 (776)
+ ||.+|+.. -|-.|.+|++...+.
T Consensus 191 ~---~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 191 L---DGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred C---CCCeeeccCCcceEEEEecChhHH
Confidence 9 99999977 566799999886543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.045 Score=53.47 Aligned_cols=195 Identities=13% Similarity=0.068 Sum_probs=92.8
Q ss_pred ccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 172 VIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
++.+.|.||.+.|+.+.+. .|+.+++++.-.+++...+.++ .+++++.-+|+.++ .. +
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D-----------------~EgI~y~g~~~~vl-~~--E 83 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGD-----------------YEGITYLGNGRYVL-SE--E 83 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SS-----------------EEEEEE-STTEEEE-EE--T
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCC-----------------ceeEEEECCCEEEE-EE--c
Confidence 7889999999999999885 5999998765566665544221 45778877775333 33 2
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc--CCCc-----eEEEEcccCCCCCCCCcceEEEEEec
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA--AGGP-----VSWMDLQCGGTDQNYDEEYLARVNWM 322 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~--~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~S 322 (776)
... .|+++++ .+.. ...+.+.. ..........++|.
T Consensus 84 r~~---------------------------------~L~~~~~~~~~~~~~~~~~~~~~l~~----~~~~N~G~EGla~D 126 (248)
T PF06977_consen 84 RDQ---------------------------------RLYIFTIDDDTTSLDRADVQKISLGF----PNKGNKGFEGLAYD 126 (248)
T ss_dssp TTT---------------------------------EEEEEEE----TT--EEEEEEEE-------S---SS--EEEEEE
T ss_pred CCC---------------------------------cEEEEEEeccccccchhhceEEeccc----ccCCCcceEEEEEc
Confidence 211 2333333 1211 12232220 01244567889999
Q ss_pred cCCeEEEEEEeecCceEEEEEEECC--CCceEEEEEeccCceee-cccccccCCCCccccCCeEEEEeccCCceEEEEEe
Q 004067 323 HGNILTAQVLNRSQTKLKVLKFDIK--TGQRKVILVEELDSWVN-LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHD 399 (776)
Q Consensus 323 pDg~~l~~~~~~~~~~~~l~~~d~~--~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~ 399 (776)
|.++.++.+..+ ....||.++.. .......... .|.. ......+.+-.+....+.++..|+.+. .|..+|
T Consensus 127 ~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~--~l~~~d 199 (248)
T PF06977_consen 127 PKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDDQ---DLDDDKLFVRDLSGLSYDPRTGHLLILSDESR--LLLELD 199 (248)
T ss_dssp TTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-H---HHH-HT--SS---EEEEETTTTEEEEEETTTT--EEEEE-
T ss_pred CCCCEEEEEeCC--CChhhEEEccccCccceeecccc---ccccccceeccccceEEcCCCCeEEEEECCCC--eEEEEC
Confidence 988777766543 45668888862 2222222111 1110 000111111111223455777787766 788888
Q ss_pred CCCcee--eccccCC-------eEEEEEEeecCCCcEEEEEE
Q 004067 400 INGTCL--GPITEGD-------WMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 400 ~~g~~~--~~lt~~~-------~~~~~~~~~s~dg~~i~~~~ 432 (776)
.+|... ..|..+. ....++ +++++|+ ||+.+
T Consensus 200 ~~G~~~~~~~L~~g~~gl~~~~~QpEGI-a~d~~G~-LYIvs 239 (248)
T PF06977_consen 200 RQGRVVSSLSLDRGFHGLSKDIPQPEGI-AFDPDGN-LYIVS 239 (248)
T ss_dssp TT--EEEEEE-STTGGG-SS---SEEEE-EE-TT---EEEEE
T ss_pred CCCCEEEEEEeCCcccCcccccCCccEE-EECCCCC-EEEEc
Confidence 777643 3444421 113344 3888885 56665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00053 Score=45.40 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.9
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEE
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFS 85 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~ 85 (776)
..|.|||||++|+|.+...+.+..+||+
T Consensus 12 ~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 6899999999999999877333467774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.043 Score=59.79 Aligned_cols=132 Identities=9% Similarity=-0.059 Sum_probs=75.8
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
.+=++|||+.+.-. ......+-.+|.++.+. .++.- +.+.....++|
T Consensus 197 ~~PlpnDGk~l~~~----~ey~~~vSvID~etmeV~~qV~V-------------------------dgnpd~v~~sp--- 244 (635)
T PRK02888 197 RIPLPNDGKDLDDP----KKYRSLFTAVDAETMEVAWQVMV-------------------------DGNLDNVDTDY--- 244 (635)
T ss_pred ccccCCCCCEeecc----cceeEEEEEEECccceEEEEEEe-------------------------CCCcccceECC---
Confidence 33479999977422 22245677888887654 22221 12334567889
Q ss_pred CceEEEEeC-----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCC----C-ceeEEee
Q 004067 138 KKKIIMVPL-----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLI----N-EQRQLTH 207 (776)
Q Consensus 138 dg~~l~~~~-----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~----g-~~~~lt~ 207 (776)
||++++++. ...+..++....... +.... .....+.+||+.. ++..+.+-++|..+ + +......
T Consensus 245 dGk~afvTsyNsE~G~tl~em~a~e~d~~--vvfni---~~iea~vkdGK~~-~V~gn~V~VID~~t~~~~~~~v~~yIP 318 (635)
T PRK02888 245 DGKYAFSTCYNSEEGVTLAEMMAAERDWV--VVFNI---ARIEEAVKAGKFK-TIGGSKVPVVDGRKAANAGSALTRYVP 318 (635)
T ss_pred CCCEEEEeccCcccCcceeeeccccCceE--EEEch---HHHHHhhhCCCEE-EECCCEEEEEECCccccCCcceEEEEE
Confidence 999998873 223444444332221 11111 1123667899964 45566799999887 3 2332222
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
-+.. ..++..||||++++...
T Consensus 319 VGKs------------------PHGV~vSPDGkylyVan 339 (635)
T PRK02888 319 VPKN------------------PHGVNTSPDGKYFIANG 339 (635)
T ss_pred CCCC------------------ccceEECCCCCEEEEeC
Confidence 2221 34788999999887654
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.018 Score=56.98 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=59.0
Q ss_pred cCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 708 KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 708 ~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
...+|-|.+++..|.+++....+++++..++.|.+++...+++..|.-....+++++++.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 33579999999999999999999999999999999999999999998877788999999998874
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.03 Score=60.76 Aligned_cols=269 Identities=11% Similarity=-0.008 Sum_probs=151.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..++-.+|-..|+-.... -..||.++..+..+......+. .+.+ .....++.|.. .
T Consensus 43 nAIs~nr~~~qiv~AGrs----~lklyai~~~~~~~~~~~~~k~----kqn~--------------~~S~~DVkW~~--~ 98 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGRS----LLKLYAINPNDFSEKCNHRFKT----KQNK--------------FYSAADVKWGQ--L 98 (839)
T ss_pred ceEeecCCcceeEEeccc----ceeeEeeCcccCCcceeeeccc----ccce--------------eeehhhccccc--c
Confidence 344556777777654331 2467777777665544332111 0000 11344566763 3
Q ss_pred CceEEEEe-CCCcEEEEeCCC--Cccc-eecCCCCCCCccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCC
Q 004067 138 KKKIIMVP-LPDGIYFQDLSC--SKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~--~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~ 211 (776)
+...|+.. .++.|-+||+.- .+.. ..+..++. .+..+.|++-...|+..... -|-.||+.....++.+.....
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R-s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHER-SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhcc-ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 56666655 667899999976 2221 12333333 37789999988888877654 488888887766665543221
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
-++.+.|||--...++...+. .-|.+||
T Consensus 178 -----------------SiRDV~fsp~~~~~F~s~~ds-----------------------------------G~lqlWD 205 (839)
T KOG0269|consen 178 -----------------SIRDVKFSPGYGNKFASIHDS-----------------------------------GYLQLWD 205 (839)
T ss_pred -----------------hhhceeeccCCCceEEEecCC-----------------------------------ceEEEee
Confidence 156788999654443333333 2366777
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccccccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTP 371 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 371 (776)
+.--...... +..+.+.+..+.|+|++.+|+... .+..+.+||..++....+..-+.. .....-.|.|
T Consensus 206 lRqp~r~~~k-------~~AH~GpV~c~nwhPnr~~lATGG----RDK~vkiWd~t~~~~~~~~tInTi-apv~rVkWRP 273 (839)
T KOG0269|consen 206 LRQPDRCEKK-------LTAHNGPVLCLNWHPNREWLATGG----RDKMVKIWDMTDSRAKPKHTINTI-APVGRVKWRP 273 (839)
T ss_pred ccCchhHHHH-------hhcccCceEEEeecCCCceeeecC----CCccEEEEeccCCCccceeEEeec-ceeeeeeecc
Confidence 6533221111 257888899999999887776553 466799999987776554332211 0011112333
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCCce--eeccccCCeEEEEEEeecC
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~~~~s~ 423 (776)
... ..+.++.--+...|++||+.-.= ...+..+...+... +|..
T Consensus 274 ~~~-------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i-~W~~ 319 (839)
T KOG0269|consen 274 ARS-------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI-AWDS 319 (839)
T ss_pred Ccc-------chhhhhhccccceEEEEeeccccccceeeeccCccccce-eccC
Confidence 211 23444555566789999976442 23344444444444 3644
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.14 Score=54.64 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=48.0
Q ss_pred CCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCcccee-cCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELK-LSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLL 198 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~-l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~ 198 (776)
..+.+..|.| |+..++. .+..+..||+.+++.+.. +-.+....+....|.|+.+.+..+. ++++.+||..
T Consensus 101 nAifDl~wap----ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 101 NAIFDLKWAP----GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred ceeEeeccCC----CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 4577899998 5544444 566799999999888721 2223333578899999998765553 4567777764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.2 Score=53.67 Aligned_cols=64 Identities=6% Similarity=-0.091 Sum_probs=37.0
Q ss_pred CceEEEEeCCCcEEEEeCCCCccceecCCCCCC----CccCceeCCCCCEEEEE-ECCcEEEEecCCCcee
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCS----PVIDPHLSSDGTMIAFV-RDCELHVLNLLINEQR 203 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~----~~~~~~~SpDg~~la~~-~~~~l~~~~l~~g~~~ 203 (776)
++..++...++.|+.+|.++|+..-........ ....|... ++ .+++. .++.++.+++++|+..
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~~~~~~g~v~a~d~~~G~~~ 228 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-GAIVGGDNGRVSAVLMEQGQLI 228 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-EEEEEcCCCEEEEEEccCChhh
Confidence 565555556788999999998876333221100 01233333 23 33333 3457999999998764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.082 Score=49.52 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=42.2
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCC--CCCCccCceeCCCCCEEEE--EE-CCcEEEEe
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSS--SCSPVIDPHLSSDGTMIAF--VR-DCELHVLN 196 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~~~~SpDg~~la~--~~-~~~l~~~~ 196 (776)
..+-...|..+.+ |..|+.. .++++.+|.-++|.-. ++-.. ....+..++|.|.+-.+.. .+ +++|-+++
T Consensus 57 GPVwqv~wahPk~-G~iLAScsYDgkVIiWke~~g~w~-k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~ 132 (299)
T KOG1332|consen 57 GPVWKVAWAHPKF-GTILASCSYDGKVIIWKEENGRWT-KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT 132 (299)
T ss_pred CCeeEEeeccccc-CcEeeEeecCceEEEEecCCCchh-hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence 3566777765444 7777765 7889999998888655 32211 1234777888886654333 22 34444443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.076 Score=52.36 Aligned_cols=225 Identities=15% Similarity=0.040 Sum_probs=112.5
Q ss_pred CCcEEEEeCCCCccceecCCCCCCCccCce--eCCCCCEEEEE-ECCcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 147 PDGIYFQDLSCSKPELKLSSSSCSPVIDPH--LSSDGTMIAFV-RDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 147 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~--~SpDg~~la~~-~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
++.|..+|+.+|+..-.....+ ....+. ..++++.++.. .++.|+.+|..+|+...-...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~------------ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP------------ 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC------------
T ss_pred CCEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc------------
Confidence 4678888887777652332211 122333 44466666665 456899999999986543332221
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEE-Ec
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM-DL 302 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l-~~ 302 (776)
.... -..++..|++...+ ..|+.+|..+|+...- ..
T Consensus 68 ------~~~~-~~~~~~~v~v~~~~------------------------------------~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 68 ------ISGA-PVVDGGRVYVGTSD------------------------------------GSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ------GGSG-EEEETTEEEEEETT------------------------------------SEEEEEETTTSCEEEEEEE
T ss_pred ------ccce-eeecccccccccce------------------------------------eeeEecccCCcceeeeecc
Confidence 0000 12345566655421 2578999888887654 22
Q ss_pred ccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCe
Q 004067 303 QCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG 382 (776)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (776)
... .............+++.+++.. ....|+.+|+++|+..--.....+.....-..+......+...++
T Consensus 105 ~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (238)
T PF13360_consen 105 TSS-----PPAGVRSSSSPAVDGDRLYVGT----SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG- 174 (238)
T ss_dssp -SS-----CTCSTB--SEEEEETTEEEEEE----TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-
T ss_pred ccc-----cccccccccCceEecCEEEEEe----ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-
Confidence 110 0111122233333465555554 255699999999987433322221100000000000000112233
Q ss_pred EEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 383 FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 383 ~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
.+|.+..+| .++.+|+.+++... ......... ....++..||+.+ .+ .+|+.+++.
T Consensus 175 ~v~~~~~~g--~~~~~d~~tg~~~w-~~~~~~~~~--~~~~~~~~l~~~~-~~----~~l~~~d~~ 230 (238)
T PF13360_consen 175 RVYVSSGDG--RVVAVDLATGEKLW-SKPISGIYS--LPSVDGGTLYVTS-SD----GRLYALDLK 230 (238)
T ss_dssp EEEEECCTS--SEEEEETTTTEEEE-EECSS-ECE--CEECCCTEEEEEE-TT----TEEEEEETT
T ss_pred EEEEEcCCC--eEEEEECCCCCEEE-EecCCCccC--CceeeCCEEEEEe-CC----CEEEEEECC
Confidence 555565555 36666988887442 221111122 1356778788777 33 378888874
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.3 Score=47.20 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=49.4
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
.++.+.||+.||-+.+. .|-+......=...+.. .++.+|. ...-....||| |
T Consensus 2 ~~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~k--------cqVpkD~----------~PQWRkl~WSp---D 54 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGK--------CQVPKDP----------NPQWRKLAWSP---D 54 (282)
T ss_pred ceeecCCCcEEEEEecc------EEEEEeccCCchheeEE--------EecCCCC----------CchheEEEECC---C
Confidence 35679999999977652 24444443322111111 1122221 12345789999 9
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCC
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSS 166 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~ 166 (776)
+..||++ ..+.|.+.|+.|.+.- .+.+
T Consensus 55 ~tlLa~a~S~G~i~vfdl~g~~lf-~I~p 82 (282)
T PF15492_consen 55 CTLLAYAESTGTIRVFDLMGSELF-VIPP 82 (282)
T ss_pred CcEEEEEcCCCeEEEEecccceeE-EcCc
Confidence 9999998 5688999999987766 5443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0052 Score=60.40 Aligned_cols=151 Identities=10% Similarity=0.022 Sum_probs=92.5
Q ss_pred eeeEEEeecCCCceEEEE-e-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC---CcEEEEecCCCc
Q 004067 127 VTRYEWVKTSSKKKIIMV-P-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD---CELHVLNLLINE 201 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~-~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g~ 201 (776)
+....|+| --..|+- . .++.|+++|+.++.+...+.-.. +-..+.|+| ....|+.. .+||.+|...=.
T Consensus 190 i~svkfNp---vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnP--eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 190 ISSVKFNP---VETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNP--EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred eeEEecCC---CcchheeeeccCCceEEEecccCCccceeeeec--cccceecCc--cccceeeccccccceehhhhhhc
Confidence 44555566 3333333 2 67889999999887763333222 346689999 44556653 469998865322
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.-.-. +......+..+.|||-|+.++..+.|.
T Consensus 263 ~p~~v----------------~~dhvsAV~dVdfsptG~EfvsgsyDk-------------------------------- 294 (433)
T KOG0268|consen 263 RPLNV----------------HKDHVSAVMDVDFSPTGQEFVSGSYDK-------------------------------- 294 (433)
T ss_pred ccchh----------------hcccceeEEEeccCCCcchhccccccc--------------------------------
Confidence 11111 111112245678999999998877653
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
.|.++....+..+.+-- +..-..+..+.||-|.++|+..+ ++..|.+|-.+
T Consensus 295 ----sIRIf~~~~~~SRdiYh-------tkRMq~V~~Vk~S~Dskyi~SGS----dd~nvRlWka~ 345 (433)
T KOG0268|consen 295 ----SIRIFPVNHGHSRDIYH-------TKRMQHVFCVKYSMDSKYIISGS----DDGNVRLWKAK 345 (433)
T ss_pred ----eEEEeecCCCcchhhhh-------HhhhheeeEEEEeccccEEEecC----CCcceeeeecc
Confidence 36677776665544321 23334678899999999887766 44556677654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0023 Score=66.12 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=54.1
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g~ 201 (776)
.+..+.||| ||++||.. +|+-|.+.|.++.+.. -+-..--+......||||||+|+--..+| +-+|.+..+.
T Consensus 292 ~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 292 SINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cccceeEcC---CCceEEEEecCceEEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 678899999 99999965 8899999999987766 33222112367789999999999888776 4566665443
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0047 Score=69.28 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=66.1
Q ss_pred CEEEEEEC--CcEEEEecCCCceeEE-eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEE-EEecCCCCCeEEE
Q 004067 182 TMIAFVRD--CELHVLNLLINEQRQL-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAF-TQVDSSEIPRFRI 257 (776)
Q Consensus 182 ~~la~~~~--~~l~~~~l~~g~~~~l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~-~~~~~~~~~~~~~ 257 (776)
.+|||+.+ ++|.++|.++...+.+ +..... +..+.|||||++|+| .+.+.-
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~------------------i~sP~~SPDG~~vAY~ts~e~~------- 373 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIEDTIS------------------VYHPDISPDGKKVAFCTGIEGL------- 373 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEecCCCc------------------eecCcCCCCCCEEEEEEeecCC-------
Confidence 47999986 4899999999888877 554432 446789999999999 654320
Q ss_pred eecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeec
Q 004067 258 MHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRS 335 (776)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~ 335 (776)
..+..||+.++.+.....+.++ -....|......++|. .|+++++.+
T Consensus 374 ------------------------~g~s~vYv~~L~t~~~~~vkl~-------ve~aaiprwrv~e~gdt~ivyv~~a~ 421 (912)
T TIGR02171 374 ------------------------PGKSSVYVRNLNASGSGLVKLP-------VENAAIPRWRVLENGDTVIVYVSDAS 421 (912)
T ss_pred ------------------------CCCceEEEEehhccCCCceEee-------cccccccceEecCCCCeEEEEEcCCC
Confidence 0124588888876554433332 2244566667788886 777776554
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.085 Score=53.66 Aligned_cols=136 Identities=13% Similarity=0.062 Sum_probs=80.4
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..+.+||+++|+..... ..+...+..+.|.|..- +|+..+ -+..+.+.|... ..+.+..|.
T Consensus 266 ~TV~lWD~~~g~p~~s~--------~~~~k~Vq~l~wh~~~p~~LLsGs----~D~~V~l~D~R~------~~~s~~~wk 327 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSI--------THHGKKVQTLEWHPYEPSVLLSGS----YDGTVALKDCRD------PSNSGKEWK 327 (463)
T ss_pred ceEEEEEcCCCCcceeh--------hhcCCceeEEEecCCCceEEEecc----ccceEEeeeccC------ccccCceEE
Confidence 56899999999988763 34667788999999754 444433 455677777652 001111111
Q ss_pred ecccccccCCCCccccCCe--EEEEeccCCceEEEEEeCC--CceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 364 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDIN--GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~--g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
.. ..-..+.|+... .++.+..+| .||-+|.. ++...++-.++..+.++. ++..-..++.+++.+. .
T Consensus 328 ~~-----g~VEkv~w~~~se~~f~~~tddG--~v~~~D~R~~~~~vwt~~AHd~~ISgl~-~n~~~p~~l~t~s~d~--~ 397 (463)
T KOG0270|consen 328 FD-----GEVEKVAWDPHSENSFFVSTDDG--TVYYFDIRNPGKPVWTLKAHDDEISGLS-VNIQTPGLLSTASTDK--V 397 (463)
T ss_pred ec-----cceEEEEecCCCceeEEEecCCc--eEEeeecCCCCCceeEEEeccCCcceEE-ecCCCCcceeeccccc--e
Confidence 00 000011222221 455667788 88888854 334555666666666665 6655565666665554 3
Q ss_pred eeEEEEEeC
Q 004067 440 SHLYCAKLY 448 (776)
Q Consensus 440 ~~l~~~~~~ 448 (776)
+.||.++.+
T Consensus 398 Vklw~~~~~ 406 (463)
T KOG0270|consen 398 VKLWKFDVD 406 (463)
T ss_pred EEEEeecCC
Confidence 899999863
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.47 Score=50.42 Aligned_cols=243 Identities=11% Similarity=0.011 Sum_probs=132.4
Q ss_pred eeEEEeecCCCceEEEEeC--CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCcee
Q 004067 128 TRYEWVKTSSKKKIIMVPL--PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQR 203 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~--~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~ 203 (776)
......| +|..+++.. ...+...+....... ...............+++|+++.... .+.+.+++..+....
T Consensus 34 ~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~n~~~-~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 34 GGVAVNP---DGTQVYVANSGSNDVSVIDATSNTVT-QSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred ceeEEcC---ccCEEEEEeecCceeeecccccceee-eeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 3456777 887777662 234555555422222 11111112345678899998765554 356888886655443
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.-..-+.. ...++++||++.++...... .
T Consensus 110 ~~~~vG~~------------------P~~~~~~~~~~~vYV~n~~~---------------------------------~ 138 (381)
T COG3391 110 GSIPVGLG------------------PVGLAVDPDGKYVYVANAGN---------------------------------G 138 (381)
T ss_pred eEeeeccC------------------CceEEECCCCCEEEEEeccc---------------------------------C
Confidence 32221110 33788999999887655321 0
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
...+.+.|..+++.... .+ .... -..++++|||+.++... .....|..+|.++..... ...... .
T Consensus 139 ~~~vsvid~~t~~~~~~-~~-------vG~~-P~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~~v~~-~~~~~~-~- 203 (381)
T COG3391 139 NNTVSVIDAATNKVTAT-IP-------VGNT-PTGVAVDPDGNKVYVTN---SDDNTVSVIDTSGNSVVR-GSVGSL-V- 203 (381)
T ss_pred CceEEEEeCCCCeEEEE-Ee-------cCCC-cceEEECCCCCeEEEEe---cCCCeEEEEeCCCcceec-cccccc-c-
Confidence 14578888888876655 32 1111 16789999999766654 245668889977655543 111100 0
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecc--ccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~l--t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
.. .-.|..-.+..++..+|.....+....+...|...+..... ..+...... ...+|+|+.+|+..... ..
T Consensus 204 ~~--~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~-v~~~p~g~~~yv~~~~~----~~ 276 (381)
T COG3391 204 GV--GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRG-VAVDPAGKAAYVANSQG----GT 276 (381)
T ss_pred cc--CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCc-eeECCCCCEEEEEecCC----Ce
Confidence 00 00111111122333344444444345889999887765443 222211122 34899999988886653 24
Q ss_pred EEEEEe
Q 004067 442 LYCAKL 447 (776)
Q Consensus 442 l~~~~~ 447 (776)
++.++.
T Consensus 277 V~vid~ 282 (381)
T COG3391 277 VSVIDG 282 (381)
T ss_pred EEEEeC
Confidence 666664
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.66 Score=50.90 Aligned_cols=179 Identities=11% Similarity=0.001 Sum_probs=88.6
Q ss_pred EEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 285 VRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 285 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..+.++|.++.+. .++... .....+.++|||++++.++........+..++.+......++.-..
T Consensus 215 ~~vSvID~etmeV~~qV~Vd----------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~---- 280 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVD----------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR---- 280 (635)
T ss_pred EEEEEEECccceEEEEEEeC----------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH----
Confidence 3456778877554 233221 2334578999999888775322222345555554433222221110
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC----c-e-eeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING----T-C-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g----~-~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
. ..+.. ++++.++. ..++-++|... + + ...|.-+.. .-++ .+||||+++|....-...
T Consensus 281 -i--------ea~vk-dGK~~~V~----gn~V~VID~~t~~~~~~~v~~yIPVGKs-PHGV-~vSPDGkylyVanklS~t 344 (635)
T PRK02888 281 -I--------EEAVK-AGKFKTIG----GSKVPVVDGRKAANAGSALTRYVPVPKN-PHGV-NTSPDGKYFIANGKLSPT 344 (635)
T ss_pred -H--------HHhhh-CCCEEEEC----CCEEEEEECCccccCCcceEEEEECCCC-ccce-EECCCCCEEEEeCCCCCc
Confidence 0 00112 23333432 23788888665 2 2 333333321 1223 389999998888654433
Q ss_pred ceeeEEEEEeCC---CCC--CccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 438 LESHLYCAKLYP---DWN--HTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 438 ~~~~l~~~~~~~---~g~--~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
+.++.+..-+ .++ ++.....++.-+.+.....|+++|+ +|+.--.+ ++|..|+...
T Consensus 345 --VSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~--aytslf~d--sqv~kwn~~~ 405 (635)
T PRK02888 345 --VTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN--AYTTLFLD--SQIVKWNIEA 405 (635)
T ss_pred --EEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC--EEEeEeec--ceeEEEehHH
Confidence 5565554210 000 0000122233344555669999997 55544333 3788888654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.94 Score=48.59 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=38.0
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeE
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQ 204 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~ 204 (776)
+.++++. .++.|+.+|.++|+..-.... .......|... +++.++...++.|+.+|+++|+..-
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV-AGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC-CCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEee
Confidence 3445544 678899999999987622221 11112334443 4433333334679999999998753
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.47 Score=44.57 Aligned_cols=122 Identities=14% Similarity=0.036 Sum_probs=76.7
Q ss_pred cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCC
Q 004067 230 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 309 (776)
Q Consensus 230 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 309 (776)
++++..-|..+.|+++..| ..+|.||+++|+.+.. +
T Consensus 117 INam~ldP~enSi~~AgGD------------------------------------~~~y~~dlE~G~i~r~--------~ 152 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGD------------------------------------GVIYQVDLEDGRIQRE--------Y 152 (325)
T ss_pred cceeEeccCCCcEEEecCC------------------------------------eEEEEEEecCCEEEEE--------E
Confidence 5678888888888887632 6799999999998775 2
Q ss_pred CCCcceEEEEEe-ccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEE--E
Q 004067 310 NYDEEYLARVNW-MHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIW--A 386 (776)
Q Consensus 310 ~~~~~~~~~~~~-SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 386 (776)
.++..++..+.- +..++ |+.. ..++++.+||+++++...+.+.... .....|.. +..|-. .
T Consensus 153 rGHtDYvH~vv~R~~~~q-ilsG----~EDGtvRvWd~kt~k~v~~ie~yk~-----~~~lRp~~------g~wigala~ 216 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQ-ILSG----AEDGTVRVWDTKTQKHVSMIEPYKN-----PNLLRPDW------GKWIGALAV 216 (325)
T ss_pred cCCcceeeeeeecccCcc-eeec----CCCccEEEEeccccceeEEeccccC-----hhhcCccc------CceeEEEec
Confidence 567777777665 55565 4333 2677899999999987666543221 00011110 111211 1
Q ss_pred ecc----CCceEEEEEeCCCceeeccccC
Q 004067 387 SEK----TGFRHLYLHDINGTCLGPITEG 411 (776)
Q Consensus 387 s~~----~g~~~l~~~~~~g~~~~~lt~~ 411 (776)
++. +|...|-+|++...+.+++-.-
T Consensus 217 ~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 217 NEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred cCceEEecCCCceeEEeccCCCceEEEec
Confidence 111 4567889999887776665443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.41 Score=52.52 Aligned_cols=117 Identities=9% Similarity=-0.058 Sum_probs=62.2
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc-CceeecccccccCCCCccccCCe--EEEE
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGG--FIWA 386 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 386 (776)
.-+.+.+..+.++|=+..++.+. .+..+.+|..... ...++.-.. ...+ ... +|++.+ ++++
T Consensus 395 ~~h~g~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~-~~Pl~~~~~~~~~v-~~v---------aWSptrpavF~~ 459 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVI-ASPLLSLDSSPDYV-TDV---------AWSPTRPAVFAT 459 (555)
T ss_pred cccCcceEeeecCCCccceeeee----ccceeEeccccCC-CCcchhhhhcccee-eee---------EEcCcCceEEEE
Confidence 34566788899999887665554 2445666665421 112211110 0000 001 233332 5566
Q ss_pred eccCCceEEEEEeCCCceeeccccC--CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 387 SEKTGFRHLYLHDINGTCLGPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 387 s~~~g~~~l~~~~~~g~~~~~lt~~--~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
.+.+| +|.+||+.-.....+... ...+.....|++.|+.|... ...|. .++|.+.
T Consensus 460 ~d~~G--~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavG-d~~G~--~~~~~l~ 516 (555)
T KOG1587|consen 460 VDGDG--NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVG-DANGT--THILKLS 516 (555)
T ss_pred EcCCC--ceehhhhhccccCCcccccccccccceeecCCCCcEEEEe-cCCCc--EEEEEcC
Confidence 66678 899999765544444333 12334445588888865544 44433 6777774
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.016 Score=61.88 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=66.4
Q ss_pred CCeeeEEEeecCCCceEEEEe------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEec
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNL 197 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l 197 (776)
..+.....|| +|+.||.. ...-|++|+...=.....|..+.-. +..++|||||++|+-+++.. .-++..
T Consensus 526 yEv~~l~~s~---~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT-VT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 526 YEVYALAISP---TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT-VTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred eeEEEEEecC---CCCEEeehhhhCCccceEEEEEeccchhhhheecccceE-EEEEEECCCCcEEEEeecCceEEeeee
Confidence 3467888888 99999987 4455999998776555345554443 78899999999999998764 333333
Q ss_pred CCCce--eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEec
Q 004067 198 LINEQ--RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVD 248 (776)
Q Consensus 198 ~~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 248 (776)
..+.. ..........+ ++-+..|+||++.++..+.|
T Consensus 602 ~~~~~~e~~fa~~k~HtR---------------IIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTR---------------IIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred ecccchhhhhccccccce---------------EEEEcccCcccceeEEecCC
Confidence 22111 01111111111 13456799999997766654
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.011 Score=64.08 Aligned_cols=143 Identities=14% Similarity=0.086 Sum_probs=80.3
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhH------------HHHhCCcEEEEE
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ------------YLRSKGILVWKL 594 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~------------~l~~~G~~v~~~ 594 (776)
+.+....+..+.+|.+...+. ++..|+||++.||||++.+.-.+...-..... .+. +-..++.+
T Consensus 16 l~~~~~~~~~lfyw~~~s~~~---~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~-~~an~l~i 91 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRND---PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWN-KFANLLFI 91 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SSG---GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GG-GTSEEEEE
T ss_pred EecCCCCCcEEEEEEEEeCCC---CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccc-cccceEEE
Confidence 344433667899999976552 25679999999999987643222110000000 111 23788999
Q ss_pred CCC-CCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhh----C------CCc
Q 004067 595 DNR-GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR----F------PDV 662 (776)
Q Consensus 595 d~r-g~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~----~------~~~ 662 (776)
|.| |.|.|-...... ...-.....+|+..++..+..+ +.....++.|+|-||||..+..+|.. . +-.
T Consensus 92 D~PvGtGfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 92 DQPVGTGFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp --STTSTT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred eecCceEEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 955 677653222211 0000112356677776655544 44455689999999999988777643 2 234
Q ss_pred eEEEEEcCCCCC
Q 004067 663 FQCAVSGAPVTS 674 (776)
Q Consensus 663 ~~~~v~~~~~~~ 674 (776)
++++++.+|+++
T Consensus 171 LkGi~IGng~~d 182 (415)
T PF00450_consen 171 LKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEESE-SB
T ss_pred cccceecCcccc
Confidence 789999999876
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0078 Score=59.84 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=78.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhC---------CcEEEEECCCCCCCCc
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK---------GILVWKLDNRGTARRG 603 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~---------G~~v~~~d~rg~g~~~ 603 (776)
.|..++.....|+..... ++.-.|+++||.||+-. + +..++..|..- -|.|++|-.+|.|.|.
T Consensus 132 eGL~iHFlhvk~p~~k~~-k~v~PlLl~HGwPGsv~--E-----FykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd 203 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKK-KKVKPLLLLHGWPGSVR--E-----FYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSD 203 (469)
T ss_pred cceeEEEEEecCCccccC-CcccceEEecCCCchHH--H-----HHhhhhhhcCccccCCccceeEEEeccCCCCcccCc
Confidence 788899999998764222 33335677899998743 2 22234444432 3789999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEE
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 668 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~ 668 (776)
.+... .. ....+...++-|.-+ +.-++..|-|.-+|..++..+|..+|+.+.+.-+
T Consensus 204 ~~sk~----GF---n~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHl 259 (469)
T KOG2565|consen 204 APSKT----GF---NAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHL 259 (469)
T ss_pred CCccC----Cc---cHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhh
Confidence 43221 11 133344444444322 2446999999999999999999999998765443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.11 Score=49.98 Aligned_cols=165 Identities=9% Similarity=0.112 Sum_probs=103.0
Q ss_pred ccChHhhhcCC-CCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE-EeecCCCCCCCCCCCCHHHHHHH
Q 004067 40 LFSLEEIVQSP-LPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE-LVFSPPDGGLDENNISPEEKLRR 117 (776)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~ 117 (776)
..|+|.+-..+ ...| ++.-+-|-||+.+|+-... .+|-+|+++.+..+ +... ...+.+ .
T Consensus 109 ~~tlE~v~~Ldteavg-~i~cvew~Pns~klasm~d------n~i~l~~l~ess~~vaev~--------ss~s~e--~-- 169 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVG-KINCVEWEPNSDKLASMDD------NNIVLWSLDESSKIVAEVL--------SSESAE--M-- 169 (370)
T ss_pred cchhhHhhcCCHHHhC-ceeeEEEcCCCCeeEEecc------CceEEEEcccCcchheeec--------cccccc--c--
Confidence 34566655443 1222 4567789999999996653 46999999876642 1111 001111 0
Q ss_pred HHHHHhcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc--EEEE
Q 004067 118 ERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE--LHVL 195 (776)
Q Consensus 118 ~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~--l~~~ 195 (776)
-....+-.||| -.||..++.+.++.++-||+.+-+....+....+..+..+.|.|+-+.++.+...+ |.+|
T Consensus 170 ------~~~ftsg~Wsp-HHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 170 ------RHSFTSGAWSP-HHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW 242 (370)
T ss_pred ------cceecccccCC-CCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence 12345567887 45899999999999999999875544344443444578899999999888877643 7788
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
|...-+.- ++. ..+...|+. .++|.|--..|+...
T Consensus 243 D~R~tk~p-v~e-------l~~HsHWvW--------~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 243 DTRKTKFP-VQE-------LPGHSHWVW--------AVRFNPEHDQLILSG 277 (370)
T ss_pred eccCCCcc-ccc-------cCCCceEEE--------EEEecCccceEEEec
Confidence 76533221 111 223455643 667778776666544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.19 Score=53.94 Aligned_cols=127 Identities=9% Similarity=0.042 Sum_probs=65.3
Q ss_pred eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEE-EecCCCceeEE
Q 004067 127 VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHV-LNLLINEQRQL 205 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~-~~l~~g~~~~l 205 (776)
....+++| +|+.+++..++...++...+-..+ . .+ ....+.|+++++..+...++.|-+ .+.+....+.+
T Consensus 35 p~~ls~np---ngr~v~V~g~geY~iyt~~~~r~k-~--~G---~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 35 PQSLSHNP---NGRFVLVCGDGEYEIYTALAWRNK-A--FG---SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp -SEEEE-T---TSSEEEEEETTEEEEEETTTTEEE-E--EE---E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred CeeEEECC---CCCEEEEEcCCEEEEEEccCCccc-c--cC---ceeEEEEecCccEEEEECCCeEEEEEcCccccceEE
Confidence 45778899 999999988888777763322222 1 11 245688998666544444555666 45544443344
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
...-. ...+ |. |.-|..... .
T Consensus 106 ~~~~~-------------------~~~I-f~--G~LL~~~~~-------------------------------------~ 126 (443)
T PF04053_consen 106 KLPFS-------------------VEKI-FG--GNLLGVKSS-------------------------------------D 126 (443)
T ss_dssp --SS--------------------EEEE-E---SSSEEEEET-------------------------------------T
T ss_pred cCCcc-------------------cceE-Ec--CcEEEEECC-------------------------------------C
Confidence 32210 1112 22 665554431 2
Q ss_pred EEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 286 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 286 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
.|.+||.++++.. .++. ..+..+.||+||+.+++.+
T Consensus 127 ~i~~yDw~~~~~i~~i~v-----------~~vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDV-----------SAVKYVIWSDDGELVALVT 163 (443)
T ss_dssp EEEEE-TTT--EEEEESS------------E-EEEEE-TTSSEEEEE-
T ss_pred CEEEEEhhHcceeeEEec-----------CCCcEEEEECCCCEEEEEe
Confidence 3789999987654 4432 1367899999999888875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.097 Score=49.42 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHh-CC--cEEEEECCCCCCCCchhhhhhh-hhccCCccHHHHHHH-H
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KG--ILVWKLDNRGTARRGLKFEASI-KHNCGRIDAEDQLTG-A 626 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G--~~v~~~d~rg~g~~~~~~~~~~-~~~~~~~~~~D~~~~-i 626 (776)
...+.++++.|.||....... ++..|.. .+ ..++.+-.-||-.-.....+.. ...-.....+|+++- +
T Consensus 27 ~~~~li~~IpGNPG~~gFY~~-------F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKl 99 (301)
T KOG3975|consen 27 EDKPLIVWIPGNPGLLGFYTE-------FARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKL 99 (301)
T ss_pred CCceEEEEecCCCCchhHHHH-------HHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHH
Confidence 466899999999987653222 2333332 22 4577777666644331111111 011122335555443 5
Q ss_pred HHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 627 EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 627 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
+++++.-. ...+|.++|||-|++|.+.+.-..
T Consensus 100 aFik~~~P-k~~ki~iiGHSiGaYm~Lqil~~~ 131 (301)
T KOG3975|consen 100 AFIKEYVP-KDRKIYIIGHSIGAYMVLQILPSI 131 (301)
T ss_pred HHHHHhCC-CCCEEEEEecchhHHHHHHHhhhc
Confidence 56655422 346899999999999999998743
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.33 Score=48.48 Aligned_cols=111 Identities=9% Similarity=0.064 Sum_probs=72.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCC------CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT------CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~------~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
+..+.||.+|++|| .|.....+.+|+.+. .++.+|..++- ..+|..+
T Consensus 59 iNAlqFS~N~~~L~-----SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H----------------------~SNIF~L 111 (609)
T KOG4227|consen 59 INALQFSHNDRFLA-----SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPH----------------------RSNIFSL 111 (609)
T ss_pred cceeeeccCCeEEe-----ecCCcceeeeechHHHHhhcCCCCceeccCcc----------------------ccceEEE
Confidence 57889999999998 333345677777653 23333433211 1468888
Q ss_pred EEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCC--CCccCceeCCCCCEEEEEECC-cEEEEecCC
Q 004067 131 EWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSC--SPVIDPHLSSDGTMIAFVRDC-ELHVLNLLI 199 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~--~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~ 199 (776)
.|.- +.+.+|. ..+++.+-|+++.+.. -+..... +.+..+..+|-...++.+++. .+-+||...
T Consensus 112 ~F~~----~N~~~~SG~~~~~VI~HDiEt~qsi-~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 112 EFDL----ENRFLYSGERWGTVIKHDIETKQSI-YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred EEcc----CCeeEecCCCcceeEeeecccceee-eeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 8986 4555555 5678889999998877 4433222 236778889977777777654 466666553
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.51 Score=50.08 Aligned_cols=137 Identities=7% Similarity=-0.026 Sum_probs=89.4
Q ss_pred CCCcEEEEeCCCCccceecCCC-CCCCccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCCCceecCCcccc
Q 004067 146 LPDGIYFQDLSCSKPELKLSSS-SCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYI 222 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~ 222 (776)
..+.|+++++.+|+.+..++.+ ..+.+....|+.+- ..+|.... .+-.++..++....+......
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~----------- 145 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKP----------- 145 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCC-----------
Confidence 5678999999999988666533 23334444555443 44555543 577778888877766554322
Q ss_pred eecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEc
Q 004067 223 AQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDL 302 (776)
Q Consensus 223 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~ 302 (776)
.+..+..+|||+.++..+ .+|.+||+++++...-
T Consensus 146 ------~~~sl~is~D~~~l~~as--------------------------------------~~ik~~~~~~kevv~~-- 179 (541)
T KOG4547|consen 146 ------LVSSLCISPDGKILLTAS--------------------------------------RQIKVLDIETKEVVIT-- 179 (541)
T ss_pred ------ccceEEEcCCCCEEEecc--------------------------------------ceEEEEEccCceEEEE--
Confidence 145778999999888765 5799999999987654
Q ss_pred ccCCCCCCCCcceEEEEEeccC-----CeEEEEEEeecCceEEEEEEECC
Q 004067 303 QCGGTDQNYDEEYLARVNWMHG-----NILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~SpD-----g~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
++++...+..++|.-+ |++++.... ......++..+-+
T Consensus 180 ------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 180 ------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-AERGITVWVVEKE 222 (541)
T ss_pred ------ecCCCcceEEEEEEEeccccccceeeeccc-cccceeEEEEEcc
Confidence 2577788888888877 554443322 2233455666653
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0044 Score=60.54 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHH-HHHHHHcC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQG 633 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~ 633 (776)
|+|+++|+..|... .|..++..+... ..|+..+.+|.+.....+. +.+++.+. ++.+++..
T Consensus 1 ~pLF~fhp~~G~~~-------~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~~~----------~l~~~a~~yv~~Ir~~Q 62 (257)
T COG3319 1 PPLFCFHPAGGSVL-------AYAPLAAALGPL-LPVYGLQAPGYGAGEQPFA----------SLDDMAAAYVAAIRRVQ 62 (257)
T ss_pred CCEEEEcCCCCcHH-------HHHHHHHHhccC-ceeeccccCcccccccccC----------CHHHHHHHHHHHHHHhC
Confidence 57889999766532 344445566555 8999999998875332221 13333332 33333322
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhh---CCCceEEEEEcCCCCC
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAPVTS 674 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~---~~~~~~~~v~~~~~~~ 674 (776)
....+.+.|||+||.+|.-+|.+ ..+-+.-++++.+...
T Consensus 63 --P~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 63 --PEGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred --CCCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 34689999999999999999875 2334555566555444
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.032 Score=53.27 Aligned_cols=185 Identities=16% Similarity=0.074 Sum_probs=94.3
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCcc
Q 004067 539 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 618 (776)
Q Consensus 539 ~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~ 618 (776)
.|+..|+. +..+|-|+-| .-...... -.++.+.+.|+++||.|++.=|.-. -++.... . ..
T Consensus 8 ~wvl~P~~------P~gvihFiGG-af~ga~P~---itYr~lLe~La~~Gy~ViAtPy~~t----fDH~~~A-~----~~ 68 (250)
T PF07082_consen 8 SWVLIPPR------PKGVIHFIGG-AFVGAAPQ---ITYRYLLERLADRGYAVIATPYVVT----FDHQAIA-R----EV 68 (250)
T ss_pred cEEEeCCC------CCEEEEEcCc-ceeccCcH---HHHHHHHHHHHhCCcEEEEEecCCC----CcHHHHH-H----HH
Confidence 46677754 3445555544 32221111 1345567889999999999887521 1111111 1 11
Q ss_pred HHHHHHHHHHHHHcCCCCCC--cEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc---------ccccccccccc
Q 004067 619 AEDQLTGAEWLIKQGLAKVG--HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---------GYDTFYTEKYM 687 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~--~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~ 687 (776)
...+..+++.+.+....+.. .++=+|||+|+-+-+.+.+..+..-++-++.+ +.+.. .+.......+.
T Consensus 69 ~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~l~~EF~ 147 (250)
T PF07082_consen 69 WERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPALRLEFT 147 (250)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccccccCcc
Confidence 33455666677665433332 57789999999999998876543223323321 11110 00000111111
Q ss_pred CCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC-CeEEEEecCCCCC
Q 004067 688 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK-PYEILIFPDERHM 754 (776)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~-~~~~~~~~~~~H~ 754 (776)
..|.+.. ..+..-..+ ...|+|.-.+|.+ .++..+.+.|+.+.. ..+....+| +|-
T Consensus 148 PsP~ET~------~li~~~Y~~-~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 148 PSPEETR------RLIRESYQV-RRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred CCHHHHH------HHHHHhcCC-ccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 1121111 111111122 3457777777765 467778888876543 355666764 785
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=57.90 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=69.6
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCC--cEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G--~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
..-+++|+||... .|.......++.....| ..++.+-.+..|.- -.+.- .+.-..+...++...+.+|.
T Consensus 115 ~k~vlvFvHGfNn------tf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l-~~Yn~--DreS~~~Sr~aLe~~lr~La 185 (377)
T COG4782 115 AKTVLVFVHGFNN------TFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSL-LGYNY--DRESTNYSRPALERLLRYLA 185 (377)
T ss_pred CCeEEEEEcccCC------chhHHHHHHHHHHhhcCCCcceEEEEcCCCCee-eeccc--chhhhhhhHHHHHHHHHHHH
Confidence 4479999999532 33333344456555555 45666666644321 00000 00001223667888899998
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhh--------CCCceEEEEEcCCCCCcc
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLAR--------FPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~--------~~~~~~~~v~~~~~~~~~ 676 (776)
+... ..+|.|++||||..+++.++-+ .+..|+-+|+.+|-.|..
T Consensus 186 ~~~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~D 237 (377)
T COG4782 186 TDKP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVD 237 (377)
T ss_pred hCCC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChh
Confidence 8753 4699999999999999987643 123467788888876643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.4 Score=47.01 Aligned_cols=201 Identities=19% Similarity=0.156 Sum_probs=117.9
Q ss_pred CceeE-cCCCCEEEEE-eCCCCcCcceEEEEecCC--CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 58 TSIGF-SPDDNLITYL-LSPDHSLSRKVFSFDPKT--CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 58 ~~~~~-SpDG~~ia~~-~~~~~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
....+ ++|+..++.. +..+ ..+.+|+..+ .....+..+. ..+....|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~~ 164 (466)
T COG2319 113 SKLALSSPDGNSILLASSSLD----GTVKLWDLSTPGKLIRTLEGHS------------------------ESVTSLAFS 164 (466)
T ss_pred eeEEEECCCcceEEeccCCCC----ccEEEEEecCCCeEEEEEecCc------------------------ccEEEEEEC
Confidence 44455 8888833322 2222 4699999886 3334444332 356789999
Q ss_pred ecCCCceEEEEeC--CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEE--ECCcEEEEecCCCceeEEeeCC
Q 004067 134 KTSSKKKIIMVPL--PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFV--RDCELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 134 p~~~dg~~l~~~~--~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~--~~~~l~~~~l~~g~~~~lt~~~ 209 (776)
| +++.++... ++.+.+|++..+... .........+....|+|+++.++.. .++.+.+|+...+.........
T Consensus 165 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~ 240 (466)
T COG2319 165 P---DGKLLASGSSLDGTIKLWDLRTGKPL-STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240 (466)
T ss_pred C---CCCEEEecCCCCCceEEEEcCCCceE-EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC
Confidence 9 999777764 788999999986655 3333333357889999999844333 2345777776655544321111
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
... ..-..|+|+++.++....+ ..+.+
T Consensus 241 ~~~-----------------~~~~~~~~~~~~~~~~~~d------------------------------------~~~~~ 267 (466)
T COG2319 241 HSD-----------------SVVSSFSPDGSLLASGSSD------------------------------------GTIRL 267 (466)
T ss_pred CCc-----------------ceeEeECCCCCEEEEecCC------------------------------------CcEEE
Confidence 110 0011599999655522211 34677
Q ss_pred EEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 290 VSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 290 ~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
|+...... .... ..+...+..+.|+|++..++... .. . .+..||..++......
T Consensus 268 ~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~-~d-~--~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 268 WDLRSSSSLLRTL--------SGHSSSVLSVAFSPDGKLLASGS-SD-G--TVRLWDLETGKLLSSL 322 (466)
T ss_pred eeecCCCcEEEEE--------ecCCccEEEEEECCCCCEEEEee-CC-C--cEEEEEcCCCceEEEe
Confidence 77765553 1111 12345677789999888666633 22 2 2666788777654433
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0084 Score=39.56 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=23.7
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeec-CceEEEEE
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRS-QTKLKVLK 343 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~l~~ 343 (776)
.........+.|||||+.|+|++++. .+..+||+
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 34555778899999999999998876 34455663
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.36 Score=46.88 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=95.3
Q ss_pred CCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEec
Q 004067 309 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE 388 (776)
Q Consensus 309 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 388 (776)
+.++...+....|-.-|+.++..+. +..--+||.++|++..+....+. +..... .....+++.++.
T Consensus 268 ltgH~~vV~a~dWL~gg~Q~vTaSW----DRTAnlwDVEtge~v~~LtGHd~---ELtHcs-------tHptQrLVvTsS 333 (481)
T KOG0300|consen 268 LTGHRAVVSACDWLAGGQQMVTASW----DRTANLWDVETGEVVNILTGHDS---ELTHCS-------THPTQRLVVTSS 333 (481)
T ss_pred eeccccceEehhhhcCcceeeeeec----cccceeeeeccCceeccccCcch---hccccc-------cCCcceEEEEec
Confidence 3567777778889999998877663 34456899999997655433222 111111 111344777777
Q ss_pred cCCceEEEEEeCCC--ceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC
Q 004067 389 KTGFRHLYLHDING--TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 466 (776)
Q Consensus 389 ~~g~~~l~~~~~~g--~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~ 466 (776)
++- ...+||... .....+..+...|.+.. |..|.+ +++++.+. .+++|.+.- -- .++..+-....
T Consensus 334 rDt--TFRLWDFReaI~sV~VFQGHtdtVTS~v-F~~dd~--vVSgSDDr--TvKvWdLrN--MR----splATIRtdS~ 400 (481)
T KOG0300|consen 334 RDT--TFRLWDFREAIQSVAVFQGHTDTVTSVV-FNTDDR--VVSGSDDR--TVKVWDLRN--MR----SPLATIRTDSP 400 (481)
T ss_pred cCc--eeEeccchhhcceeeeecccccceeEEE-EecCCc--eeecCCCc--eEEEeeecc--cc----CcceeeecCCc
Confidence 776 555666442 22344555556667665 777766 44544443 388888762 11 13444444444
Q ss_pred eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 467 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 467 ~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
++-+.+|..+..++.-..+ -++.++|+..
T Consensus 401 ~NRvavs~g~~iIAiPhDN----RqvRlfDlnG 429 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAIPHDN----RQVRLFDLNG 429 (481)
T ss_pred cceeEeecCCceEEeccCC----ceEEEEecCC
Confidence 5667888877777776554 3578888733
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.18 Score=54.10 Aligned_cols=128 Identities=10% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
|..++.+|+|+.|+-... +...++...+...+. . ....++.|++
T Consensus 35 p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k~-~---------------------------G~g~~~vw~~-- 78 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNKA-F---------------------------GSGLSFVWSS-- 78 (443)
T ss_dssp -SEEEE-TTSSEEEEEET------TEEEEEETTTTEEEE-E---------------------------EE-SEEEE-T--
T ss_pred CeeEEECCCCCEEEEEcC------CEEEEEEccCCcccc-c---------------------------CceeEEEEec--
Confidence 689999999999986322 223444432222211 1 1234688999
Q ss_pred CCceEEEEeCCCcEEE-EeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee-EEeeCCCCCce
Q 004067 137 SKKKIIMVPLPDGIYF-QDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR-QLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~-~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~-~lt~~~~~~~~ 214 (776)
++++.+...+..|.+ -+.+....+ .+...-. +.. -|. |..|+...++.|..+|.++++.. ++...+
T Consensus 79 -~n~yAv~~~~~~I~I~kn~~~~~~k-~i~~~~~--~~~-If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~----- 146 (443)
T PF04053_consen 79 -RNRYAVLESSSTIKIYKNFKNEVVK-SIKLPFS--VEK-IFG--GNLLGVKSSDFICFYDWETGKLIRRIDVSA----- 146 (443)
T ss_dssp -SSEEEEE-TTS-EEEEETTEE-TT------SS---EEE-EE---SSSEEEEETTEEEEE-TTT--EEEEESS-E-----
T ss_pred -CccEEEEECCCeEEEEEcCccccce-EEcCCcc--cce-EEc--CcEEEEECCCCEEEEEhhHcceeeEEecCC-----
Confidence 898777777777777 455444422 3322110 111 222 88777777777999999988653 443221
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
+..+.||+||+.++..+.
T Consensus 147 ---------------vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 147 ---------------VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp ----------------EEEEE-TTSSEEEEE-S
T ss_pred ---------------CcEEEEECCCCEEEEEeC
Confidence 236789999999999864
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.4 Score=50.97 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=63.7
Q ss_pred eeEcCCCCEEEEEeCCCCc----CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 60 IGFSPDDNLITYLLSPDHS----LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
...|||.+.+.+....... .....+++++.++.. ...... .+..+....|||
T Consensus 102 ~~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~-~~~~~~----------------------~~~~~~~~~wsp- 157 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEK-LHPPEY----------------------EGSKIQYASWSP- 157 (755)
T ss_pred cccChhhhhheeccCcccccceeeEEEEEEEEcCCCCc-ccCccc----------------------CCCeeEEEEEcC-
Confidence 3678999999887663221 123566667666651 111000 012456789999
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCccceecCCCCC-----------------CCccCceeCCCCCEEEEEECC
Q 004067 136 SSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSC-----------------SPVIDPHLSSDGTMIAFVRDC 190 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~-----------------~~~~~~~~SpDg~~la~~~~~ 190 (776)
.|+.++|....+||...-......+.+..+.. ......-|||||..++|...+
T Consensus 158 --~~~~l~yv~~~niy~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~ 227 (755)
T KOG2100|consen 158 --LGNDLAYVLHNNIYYQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFN 227 (755)
T ss_pred --CCCEEEEEEecccccccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEec
Confidence 99999999888888665554444311111111 013346799999999988754
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.16 Score=53.44 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=64.7
Q ss_pred ceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccc---cCCeEEEEeccC
Q 004067 314 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTK---YSGGFIWASEKT 390 (776)
Q Consensus 314 ~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~ 390 (776)
..++.+.|+.||-.++..+ ..+.+++||+.+..+-.+-.+.... | -..+.| ++...+++.+..
T Consensus 229 ~svTal~F~d~gL~~aVGt----s~G~v~iyDLRa~~pl~~kdh~~e~---------p-i~~l~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGT----STGSVLIYDLRASKPLLVKDHGYEL---------P-IKKLDWQDTDQQNKVVSMDKR 294 (703)
T ss_pred CcceEEEecCCceeEEeec----cCCcEEEEEcccCCceeecccCCcc---------c-eeeecccccCCCceEEecchH
Confidence 3578899999997666655 4567999999988776665543220 0 000111 111233333332
Q ss_pred CceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 391 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 391 g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
-|.+|+..+|++...-+....+..+. +-|++. ++|++....+ .+.|.++
T Consensus 295 ---~~kiWd~~~Gk~~asiEpt~~lND~C-~~p~sG-m~f~Ane~~~--m~~yyiP 343 (703)
T KOG2321|consen 295 ---ILKIWDECTGKPMASIEPTSDLNDFC-FVPGSG-MFFTANESSK--MHTYYIP 343 (703)
T ss_pred ---HhhhcccccCCceeeccccCCcCcee-eecCCc-eEEEecCCCc--ceeEEcc
Confidence 56778877776544433333344554 445555 6788777654 5666665
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.8 Score=46.20 Aligned_cols=236 Identities=16% Similarity=0.161 Sum_probs=132.6
Q ss_pred CCeeeEEEeecCCCceEEEEeC-CCcEEEEeCCCCc-cceecCCCCCCCccCcee-CCCCCEEEEE-E--CCcEEEEecC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL-PDGIYFQDLSCSK-PELKLSSSSCSPVIDPHL-SSDGTMIAFV-R--DCELHVLNLL 198 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~-~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~-SpDg~~la~~-~--~~~l~~~~l~ 198 (776)
..+....+.+ ++..++... ++.+.+|+...+. ....+.......+....+ ++++..++.. . ++.+.+++..
T Consensus 66 ~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 66 DSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred ceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 3567788888 888888774 8889999998885 221443322213455556 8899833333 3 3468889988
Q ss_pred C-Cce-eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 I-NEQ-RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~-g~~-~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+ ... ..+...... +..+.|+|+++.++....
T Consensus 143 ~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~~~~~~----------------------------- 175 (466)
T COG2319 143 TPGKLIRTLEGHSES------------------VTSLAFSPDGKLLASGSS----------------------------- 175 (466)
T ss_pred CCCeEEEEEecCccc------------------EEEEEECCCCCEEEecCC-----------------------------
Confidence 7 333 333222211 346889999995554321
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE--E
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV--I 354 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~--l 354 (776)
....+.+|+..+++..... ..+...+..+.|+|++..++.. ...+..|..||...+.... +
T Consensus 176 ------~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~---~~~d~~i~~wd~~~~~~~~~~~ 238 (466)
T COG2319 176 ------LDGTIKLWDLRTGKPLSTL--------AGHTDPVSSLAFSPDGGLLIAS---GSSDGTIRLWDLSTGKLLRSTL 238 (466)
T ss_pred ------CCCceEEEEcCCCceEEee--------ccCCCceEEEEEcCCcceEEEE---ecCCCcEEEEECCCCcEEeeec
Confidence 0134788888874443331 3356678899999999833333 1134445577877555443 2
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee--eccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL--GPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~--~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
..+.... .. .|.+ ++ .++.....++ .+.+|+...... ..+..+...+... .|+|++..++. .
T Consensus 239 ~~~~~~~-~~---~~~~-------~~-~~~~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~ 302 (466)
T COG2319 239 SGHSDSV-VS---SFSP-------DG-SLLASGSSDG--TIRLWDLRSSSSLLRTLSGHSSSVLSV-AFSPDGKLLAS-G 302 (466)
T ss_pred CCCCcce-eE---eECC-------CC-CEEEEecCCC--cEEEeeecCCCcEEEEEecCCccEEEE-EECCCCCEEEE-e
Confidence 1111111 11 2333 12 3444555566 666666554332 2222233444444 48888887666 4
Q ss_pred ccCCCceeeEEEE
Q 004067 433 TLDGPLESHLYCA 445 (776)
Q Consensus 433 ~~~~~~~~~l~~~ 445 (776)
..++. ..+|..
T Consensus 303 ~~d~~--~~~~~~ 313 (466)
T COG2319 303 SSDGT--VRLWDL 313 (466)
T ss_pred eCCCc--EEEEEc
Confidence 44443 678833
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0091 Score=57.46 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=44.6
Q ss_pred CCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC----CCceEEEEEcCC
Q 004067 596 NRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAP 671 (776)
Q Consensus 596 ~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----~~~~~~~v~~~~ 671 (776)
+||.-.+..+|.+.....+. .....+..|++++.+...-...+|.+.|||.||.+|.++++.. .+++..++...+
T Consensus 43 FRGTd~t~~~W~ed~~~~~~-~~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 43 FRGTDDTLVDWKEDFNMSFQ-DETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred EECCCCchhhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 34443333344443333222 1234456677777654211234699999999999999999873 346777776554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.21 Score=48.14 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=114.4
Q ss_pred CceeEcCCCCE-EEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 58 TSIGFSPDDNL-ITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 58 ~~~~~SpDG~~-ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
..+.++|--.+ ++|.+. .| .--+++|+++.+. ..+.+.++ .+ -+.-=.|||
T Consensus 71 Hgi~~~p~~~ravafARr-PG---tf~~vfD~~~~~~pv~~~s~~~--------------------RH--fyGHGvfs~- 123 (366)
T COG3490 71 HGIAFHPALPRAVAFARR-PG---TFAMVFDPNGAQEPVTLVSQEG--------------------RH--FYGHGVFSP- 123 (366)
T ss_pred CCeecCCCCcceEEEEec-CC---ceEEEECCCCCcCcEEEecccC--------------------ce--eecccccCC-
Confidence 46677775544 444444 33 3578889988765 44443222 00 011226889
Q ss_pred CCCceEEEEeCC------CcEEEEeCCCCccce-ecCCCCCCCccCceeCCCCCEEEEEECC------------------
Q 004067 136 SSKKKIIMVPLP------DGIYFQDLSCSKPEL-KLSSSSCSPVIDPHLSSDGTMIAFVRDC------------------ 190 (776)
Q Consensus 136 ~~dg~~l~~~~~------~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~SpDg~~la~~~~~------------------ 190 (776)
||.+|+-+.+ +-|-++|...+-.+. .+.... -....+.|.+||+.|+....+
T Consensus 124 --dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G-iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMe 200 (366)
T COG3490 124 --DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG-IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSME 200 (366)
T ss_pred --CCcEEEeecCCCCCCCceEEEEecccccceecccccCC-cCcceeEEecCCcEEEEeCCceecccccCccccchhhcC
Confidence 9999988744 347778877443331 111111 124668999999998876431
Q ss_pred -cEEEEecCCCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 191 -ELHVLNLLINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 191 -~l~~~~l~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
.+-+++..+|+.. +.+.... ...++ ++.+...+||+ |.|...-++....+
T Consensus 201 PSlvlld~atG~liekh~Lp~~----l~~lS----------iRHld~g~dgt-vwfgcQy~G~~~d~------------- 252 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPAS----LRQLS----------IRHLDIGRDGT-VWFGCQYRGPRNDL------------- 252 (366)
T ss_pred ccEEEEeccccchhhhccCchh----hhhcc----------eeeeeeCCCCc-EEEEEEeeCCCccC-------------
Confidence 2666665666432 2221110 00011 44677788887 66655322211110
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
.-|.-.-..++..+.++.++.. ...-..|+..++-..+..+++.++.++ ...++||+++
T Consensus 253 ----------------ppLvg~~~~g~~l~~~~~pee~--~~~~anYigsiA~n~~~glV~lTSP~G---N~~vi~da~t 311 (366)
T COG3490 253 ----------------PPLVGHFRKGEPLEFLDLPEEQ--TAAFANYIGSIAANRRDGLVALTSPRG---NRAVIWDAAT 311 (366)
T ss_pred ----------------CcceeeccCCCcCcccCCCHHH--HHHHHhhhhheeecccCCeEEEecCCC---CeEEEEEcCC
Confidence 1111111223333333332100 012245677777776666777776554 3478999999
Q ss_pred CceEEE
Q 004067 349 GQRKVI 354 (776)
Q Consensus 349 g~~~~l 354 (776)
|.+...
T Consensus 312 G~vv~~ 317 (366)
T COG3490 312 GAVVSE 317 (366)
T ss_pred CcEEec
Confidence 997654
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.36 Score=53.22 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=85.4
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+.+++.|+||+.+|++.... ..+|+... ++..+.+.. +.....++|++
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~----~~l~~~~~-g~~~~~~~~-------------------------g~~Lt~PS~d~- 392 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSR----TTLYTVSP-GQPARALTS-------------------------GSTLTRPSFSP- 392 (573)
T ss_pred cccceeecCCCceEEEecCCC----cEEEEecC-CCcceeeec-------------------------CCCccCCcccC-
Confidence 467899999999999985422 36877776 345554443 24567788998
Q ss_pred CCCceEEEEeCCC---cEEEEeCCCC-cc------ceecCCCCCCCccCceeCCCCCEEEEEE--CCc--EEEEec---C
Q 004067 136 SSKKKIIMVPLPD---GIYFQDLSCS-KP------ELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCE--LHVLNL---L 198 (776)
Q Consensus 136 ~~dg~~l~~~~~~---~l~~~d~~~~-~~------~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~--l~~~~l---~ 198 (776)
+| ++....++ .|..+.-.+. +. ........+..+..++.|+||-++|++. ++. |++--+ .
T Consensus 393 --~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~ 469 (573)
T PRK13614 393 --QD-WVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNE 469 (573)
T ss_pred --CC-CEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCC
Confidence 88 67665443 3555443321 11 0012212222488899999999999998 443 776433 4
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
+|..+.|+..-.- .. .....++.|..|+. |+..+
T Consensus 470 ~G~P~~L~~~~~~---~~----------~~~~~sl~W~~~~s-l~V~~ 503 (573)
T PRK13614 470 DGTPRELTAPITL---AA----------DSDADTGAWVGDST-VVVTK 503 (573)
T ss_pred CCCeEEccCceec---cc----------CCCcceeEEcCCCE-EEEEe
Confidence 5665666432110 00 01245788998887 54444
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.013 Score=62.85 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=78.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+.++.|+++...|+ .|.....|.+||++.++. +.|+.+. .++.++.|+|
T Consensus 73 IeSl~f~~~E~Lla-----agsasgtiK~wDleeAk~vrtLtgh~------------------------~~~~sv~f~P- 122 (825)
T KOG0267|consen 73 IESLTFDTSERLLA-----AGSASGTIKVWDLEEAKIVRTLTGHL------------------------LNITSVDFHP- 122 (825)
T ss_pred ceeeecCcchhhhc-----ccccCCceeeeehhhhhhhhhhhccc------------------------cCcceeeecc-
Confidence 47889999999998 344445799999997764 5566432 3677788999
Q ss_pred CCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 136 SSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 136 ~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
=|.+.+- ..+.++.+||..-....-....+.. .+...+|+|||++++-..+ +.+-+||+.-|+.
T Consensus 123 --~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~ 188 (825)
T KOG0267|consen 123 --YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL 188 (825)
T ss_pred --ceEEeccccccccceehhhhccCceeeecCCcc-eeEEEeecCCCceeeccCCcceeeeeccccccc
Confidence 7777653 3678899999873322213332222 2667899999999988776 4477777765543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.4 Score=43.16 Aligned_cols=104 Identities=10% Similarity=0.099 Sum_probs=64.0
Q ss_pred CeeeEEEeecCCCceEEEEeCC--CcEEEEeCCCCccc-eecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLP--DGIYFQDLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~--~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~ 201 (776)
++.+..|+| |.+.|+...+ ..|.-++.+|.-.+ .+|+... ....+.|..+|+.++.-- ++.+|++.++.+.
T Consensus 87 nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 87 NVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 578899999 9999887744 45666677766555 1333322 355678888887655442 3567777776542
Q ss_pred ee------EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 202 QR------QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 202 ~~------~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
.. .++-+... ..-+| +++++|+|....+++.+.
T Consensus 162 ~~~~~~~~~i~L~~~~-k~N~G------------fEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 162 TVISAKVQKIPLGTTN-KKNKG------------FEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cEEeccceEEeccccC-CCCcC------------ceeeecCCCCceEEEEEc
Confidence 21 22221111 00122 568999999999988763
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.4 Score=51.66 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=47.9
Q ss_pred CceeEcCC-CCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCC--CCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 58 TSIGFSPD-DNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDEN--NISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 58 ~~~~~SpD-G~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..|+++|. +..|||++.- .+|+.++.+++++++|.......+.. +++.. .......+.......|.|+|
T Consensus 203 ~dP~lcP~~~~fia~i~~~------dl~V~n~~~~~ekrlt~~h~g~sn~~dd~~saG--Vasyv~QEEfdR~~GyWW~p 274 (867)
T KOG2281|consen 203 MDPKLCPADPDFIAYIKVC------DLWVLNILTGEEKRLTYIHNGSSNSKDDAISAG--VASYVVQEEFDRFEGYWWSP 274 (867)
T ss_pred cCcccCCCCccceeeeehh------hhhhhhhhhchhhceeeeeccccccccchhhcC--cchHHHHHHHHhhcceeecC
Confidence 47788885 9999999874 49999999999999986544222211 22211 00011111223456789998
Q ss_pred cCCC-ceEEEEe
Q 004067 135 TSSK-KKIIMVP 145 (776)
Q Consensus 135 ~~~d-g~~l~~~ 145 (776)
+|.+ -.+|+|.
T Consensus 275 ~s~~~~~rIlYe 286 (867)
T KOG2281|consen 275 PSGLKILRILYE 286 (867)
T ss_pred CCCCceEEEEee
Confidence 6632 3445555
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.51 Score=46.28 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=51.3
Q ss_pred cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc-eEEEEcccCCCC
Q 004067 230 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP-VSWMDLQCGGTD 308 (776)
Q Consensus 230 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~ 308 (776)
+.-.+|++|+..|+....+ .++++|...+.. -.....
T Consensus 13 itchAwn~drt~iAv~~~~------------------------------------~evhiy~~~~~~~w~~~ht------ 50 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNN------------------------------------HEVHIYSMLGADLWEPAHT------ 50 (361)
T ss_pred eeeeeecCCCceEEeccCC------------------------------------ceEEEEEecCCCCceecee------
Confidence 3457899999999875532 346777766665 222222
Q ss_pred CCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC-CCCceE
Q 004067 309 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI-KTGQRK 352 (776)
Q Consensus 309 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~-~~g~~~ 352 (776)
+..++..+..+.|+|.+..|+..+. +..-|+|.. .+|+.+
T Consensus 51 ls~Hd~~vtgvdWap~snrIvtcs~----drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 51 LSEHDKIVTGVDWAPKSNRIVTCSH----DRNAYVWTQPSGGTWK 91 (361)
T ss_pred hhhhCcceeEEeecCCCCceeEccC----CCCccccccCCCCeec
Confidence 2677888999999999987876652 233566776 666654
|
|
| >COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.036 Score=56.10 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=89.7
Q ss_pred hhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 579 ~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
..+..|+++|+.|+.+|---+-++.+... ....|+.+.+++...+- ...++.++|+|+|+-+--.+-.+
T Consensus 278 ~v~~~l~~~gvpVvGvdsLRYfW~~rtPe---------~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~~n~ 346 (456)
T COG3946 278 EVAEALQKQGVPVVGVDSLRYFWSERTPE---------QIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFAYNR 346 (456)
T ss_pred HHHHHHHHCCCceeeeehhhhhhccCCHH---------HHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHHHHh
Confidence 35788999999999999543323322211 12678888888887764 45699999999999877666655
Q ss_pred CCCceEEEE------EcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCC-CcEEEEecCCC--CccChHHH
Q 004067 659 FPDVFQCAV------SGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMID--ENVHFRHT 729 (776)
Q Consensus 659 ~~~~~~~~v------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D--~~v~~~~~ 729 (776)
-|...+..| .+.-..++ .... +.|++...+. .......+.++. .-+.+|+|.+| ..||-
T Consensus 347 L~~~~r~~v~~~~ll~l~~~~~f---e~~v-~gWlg~~~~g-----~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp~--- 414 (456)
T COG3946 347 LPPATRQRVRMVSLLGLGRTADF---EISV-EGWLGMAGEG-----AGDVVPDIAKLPLARVQCIYGQEEKDTACPS--- 414 (456)
T ss_pred CCHHHHHHHHHHHHHhccccceE---EEEE-eeeeccCCcC-----CCCcchhhhhCCcceeEEEecCccccccCCc---
Confidence 443222111 11111111 1111 1222222211 123344555665 46889999665 44432
Q ss_pred HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 730 ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 730 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
++. +..+.+.+|| ||.| .++-+.+.+.+++=+
T Consensus 415 ------l~~--~~~~~v~lpG-gHHF--d~dy~~la~~il~~~ 446 (456)
T COG3946 415 ------LKA--KGVDTVKLPG-GHHF--DGDYEKLAKAILQGM 446 (456)
T ss_pred ------chh--hcceeEecCC-Cccc--CccHHHHHHHHHHHH
Confidence 221 3357778888 5545 345555566666544
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.02 Score=47.69 Aligned_cols=59 Identities=8% Similarity=0.133 Sum_probs=48.8
Q ss_pred CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
..|+|++.++.|..+|...+..+.+.| ....++..++.||.... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l----~~s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARL----PGSRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHC----CCceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 489999999999999999999999987 33689999999998743 344566778888875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.29 Score=52.93 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=47.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.+..|.-||++|+-+-+++ .|.+-.++|... .. ++-+ +.-.....||+
T Consensus 118 V~SmsWn~dG~kIcIvYeDG-----avIVGsvdGNRI---wg------------KeLk---------g~~l~hv~ws~-- 166 (1189)
T KOG2041|consen 118 VVSMSWNLDGTKICIVYEDG-----AVIVGSVDGNRI---WG------------KELK---------GQLLAHVLWSE-- 166 (1189)
T ss_pred EEEEEEcCCCcEEEEEEccC-----CEEEEeecccee---cc------------hhcc---------hheccceeecc--
Confidence 46889999999999776643 366666655432 10 0000 01123467999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPE 161 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~ 161 (776)
|.+.++|. .++.+.++|-++.-.+
T Consensus 167 -D~~~~Lf~~ange~hlydnqgnF~~ 191 (1189)
T KOG2041|consen 167 -DLEQALFKKANGETHLYDNQGNFER 191 (1189)
T ss_pred -cHHHHHhhhcCCcEEEecccccHHH
Confidence 99999987 6778888888776444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.44 Score=55.12 Aligned_cols=193 Identities=11% Similarity=0.080 Sum_probs=98.7
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC--CCceEEEE-------E
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TGQRKVIL-------V 356 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~--~g~~~~l~-------~ 356 (776)
.|.++|+++.....+ -.-+..+...+||||++++++.+.+ ..|+.++-+ -=..+.+. .
T Consensus 91 ~iilvd~et~~~eiv---------g~vd~GI~aaswS~Dee~l~liT~~----~tll~mT~~f~~i~E~~L~~d~~~~sk 157 (1265)
T KOG1920|consen 91 DIILVDPETLELEIV---------GNVDNGISAASWSPDEELLALITGR----QTLLFMTKDFEPIAEKPLDADDERKSK 157 (1265)
T ss_pred cEEEEcccccceeee---------eeccCceEEEeecCCCcEEEEEeCC----cEEEEEeccccchhccccccccccccc
Confidence 356667777766655 2345678889999999988888732 334443320 00111221 1
Q ss_pred eccCceeecccccccCC------------------------CCccccCCeEEEE-e---ccCCceEEEEEeCCCceeecc
Q 004067 357 EELDSWVNLHDCFTPLD------------------------KGVTKYSGGFIWA-S---EKTGFRHLYLHDINGTCLGPI 408 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~-s---~~~g~~~l~~~~~~g~~~~~l 408 (776)
....+|..-...|+... ..++|-+++-||+ + ...|...|.+|+.+| .....
T Consensus 158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~ 236 (1265)
T KOG1920|consen 158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNST 236 (1265)
T ss_pred cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhcc
Confidence 11114433233333111 1156767763333 2 345668999999883 33333
Q ss_pred ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCC
Q 004067 409 TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLD 487 (776)
Q Consensus 409 t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~ 487 (776)
..........++|-|.|..|.......+...+.++.-+--..|.. ..+..-... +..+.|+.++..|+.+.+...
T Consensus 237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f----~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e 312 (1265)
T KOG1920|consen 237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF----VLPFPLDEKEVEELAWNSNSDILAVVTSNLE 312 (1265)
T ss_pred cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc----ccCCcccccchheeeecCCCCceeeeecccc
Confidence 222222334456888887766654433222234443331001111 111111122 667899999999998766543
Q ss_pred CCCEEEEEEc
Q 004067 488 SPPRILLCSL 497 (776)
Q Consensus 488 ~~~~i~~~~~ 497 (776)
. ..|++|-+
T Consensus 313 ~-~~v~lwt~ 321 (1265)
T KOG1920|consen 313 N-SLVQLWTT 321 (1265)
T ss_pred c-ceEEEEEe
Confidence 2 33555543
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.035 Score=56.26 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=65.3
Q ss_pred hhHHHHhCCcEEEEECCCCCCCCchhhhhhh---hhccC----CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHH
Q 004067 580 RAQYLRSKGILVWKLDNRGTARRGLKFEASI---KHNCG----RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLS 652 (776)
Q Consensus 580 ~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~---~~~~~----~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a 652 (776)
+.+...+.+-.+|.+..|=.|.+- +|.+.. ..+.+ .+..+|+...+.+|+.........|+++|.|+||+++
T Consensus 103 m~D~Ap~~~AllVFaEHRyYGeS~-PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLa 181 (492)
T KOG2183|consen 103 MWDLAPELKALLVFAEHRYYGESL-PFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLA 181 (492)
T ss_pred HHhhhHhhCceEEEeehhccccCC-CCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHH
Confidence 445556788899999999777652 222221 11122 2347788888888887755566789999999999999
Q ss_pred HHHHhhCCCceEEEEE-cCCC
Q 004067 653 AITLARFPDVFQCAVS-GAPV 672 (776)
Q Consensus 653 ~~~a~~~~~~~~~~v~-~~~~ 672 (776)
.+.=.++|.++.++++ .+|+
T Consensus 182 AWfRlKYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 182 AWFRLKYPHIVLGALAASAPV 202 (492)
T ss_pred HHHHhcChhhhhhhhhccCce
Confidence 9999999998766654 4454
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.83 E-value=2.5 Score=46.09 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=55.9
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 389 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (776)
.+|...+..++.-|++. ++.++ +++.|.+|+++++.......+..-.|+.. ..-+++++.+..+
T Consensus 176 ~gHtD~VRgL~vl~~~~-flScs----NDg~Ir~w~~~ge~l~~~~ghtn~vYsis-----------~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 176 SGHTDCVRGLAVLDDSH-FLSCS----NDGSIRLWDLDGEVLLEMHGHTNFVYSIS-----------MALSDGLIVSTGE 239 (745)
T ss_pred ccchhheeeeEEecCCC-eEeec----CCceEEEEeccCceeeeeeccceEEEEEE-----------ecCCCCeEEEecC
Confidence 67888899999999986 44444 56789999997666666665554444321 1225567777777
Q ss_pred CCceEEEEEeCCCceeeccccCCeEEEE
Q 004067 390 TGFRHLYLHDINGTCLGPITEGDWMVEQ 417 (776)
Q Consensus 390 ~g~~~l~~~~~~g~~~~~lt~~~~~~~~ 417 (776)
++ +|.+|+-+ .-.+.|+.....+..
T Consensus 240 Dr--tlriW~~~-e~~q~I~lPttsiWs 264 (745)
T KOG0301|consen 240 DR--TLRIWKKD-ECVQVITLPTTSIWS 264 (745)
T ss_pred Cc--eEEEeecC-ceEEEEecCccceEE
Confidence 77 67777654 333445544433333
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.3 Score=47.12 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=74.1
Q ss_pred eEEEEecCCCc----eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeC
Q 004067 82 KVFSFDPKTCK----QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDL 155 (776)
Q Consensus 82 ~l~~~~~~~~~----~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~ 155 (776)
+--+||+++|. ..||..|++ .+.+.+|+. +|..++.+ .+|.+.+.|+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDK------------------------EV~DIaf~~---~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDK------------------------EVYDIAFLK---GSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCc------------------------ceeEEEecc---CccceEEEecCCCcEEEEEe
Confidence 45667877762 467777654 688999998 88877754 7888999998
Q ss_pred CCCccceec-CCCC-CCCccCceeCCC-CCEEEEEEC--CcEEEEecCCCce--eEEeeCCCCCceecCCcccceecccC
Q 004067 156 SCSKPELKL-SSSS-CSPVIDPHLSSD-GTMIAFVRD--CELHVLNLLINEQ--RQLTHGANGNTVTHGLAEYIAQEEMD 228 (776)
Q Consensus 156 ~~~~~~~~l-~~~~-~~~~~~~~~SpD-g~~la~~~~--~~l~~~~l~~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~ 228 (776)
..-+.-..+ .... .......+|++. -.++|-... +++.+.|+.--.. .+|-....
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a------------------ 288 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA------------------ 288 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc------------------
Confidence 765544122 2221 233555677763 334444333 3577777654322 22221111
Q ss_pred CcceEEECCCCCeEEEEEecC
Q 004067 229 RKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 229 ~~~~~~wspDg~~l~~~~~~~ 249 (776)
-+++++|.|.++.-+....|+
T Consensus 289 ~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 289 SVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred cccceEecCCCCceeeecCCc
Confidence 167899999987666655444
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.71 E-value=3.7 Score=45.25 Aligned_cols=95 Identities=8% Similarity=-0.023 Sum_probs=55.3
Q ss_pred eEEEEEeCC--CceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceee-cCCCCeEE
Q 004067 393 RHLYLHDIN--GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-TNGKGKHV 469 (776)
Q Consensus 393 ~~l~~~~~~--g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l-~~~~~~~~ 469 (776)
.++.+|.-. .....++...-..+... .|||..-.+++....++. ++||.+..+..+ +...+ .+..-..-
T Consensus 420 W~vriWs~~~~~~Pl~~~~~~~~~v~~v-aWSptrpavF~~~d~~G~--l~iWDLl~~~~~-----Pv~s~~~~~~~l~~ 491 (555)
T KOG1587|consen 420 WTVRIWSEDVIASPLLSLDSSPDYVTDV-AWSPTRPAVFATVDGDGN--LDIWDLLQDDEE-----PVLSQKVCSPALTR 491 (555)
T ss_pred ceeEeccccCCCCcchhhhhccceeeee-EEcCcCceEEEEEcCCCc--eehhhhhccccC-----Ccccccccccccce
Confidence 366666533 33223332222334444 499988878888776654 899999874322 22222 12222345
Q ss_pred EEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 470 AVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 470 ~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
+.++++|+.|+..-.. +.++++++..
T Consensus 492 ~~~s~~g~~lavGd~~----G~~~~~~l~~ 517 (555)
T KOG1587|consen 492 VRWSPNGKLLAVGDAN----GTTHILKLSE 517 (555)
T ss_pred eecCCCCcEEEEecCC----CcEEEEEcCc
Confidence 6889999988877554 4577777643
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.031 Score=54.01 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=17.9
Q ss_pred CCcEEEEeechHHHHHHHHHh
Q 004067 637 VGHIGLYGWSYGGYLSAITLA 657 (776)
Q Consensus 637 ~~~i~l~G~S~GG~~a~~~a~ 657 (776)
..+|.++||||||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 358999999999999877765
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.22 Score=50.87 Aligned_cols=160 Identities=9% Similarity=0.083 Sum_probs=97.4
Q ss_pred eeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCC--C
Q 004067 127 VTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLI--N 200 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~--g 200 (776)
+.++.|.- +-+.|+++ .+.+|.+||+++|++...++ ..+..+....|.|....++.... ..+-+.|... .
T Consensus 246 vl~Ls~n~---~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 246 VLALSWNR---NFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN 321 (463)
T ss_pred HHHHHhcc---ccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence 34567777 77777776 67889999999999994444 44446899999998877776654 4466666542 1
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
.-+.+...++ +..++|.|.....++.+.+.+.
T Consensus 322 s~~~wk~~g~-------------------VEkv~w~~~se~~f~~~tddG~----------------------------- 353 (463)
T KOG0270|consen 322 SGKEWKFDGE-------------------VEKVAWDPHSENSFFVSTDDGT----------------------------- 353 (463)
T ss_pred cCceEEeccc-------------------eEEEEecCCCceeEEEecCCce-----------------------------
Confidence 1111111111 4467788888777777654432
Q ss_pred CCCeEEEEEEEcCCC-c-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 281 SNVKVRLGVVSAAGG-P-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
|+-+|+... + +..+ ..|...|..+++++--.-++.+ ...+..+.+|+...-..+.+..
T Consensus 354 ------v~~~D~R~~~~~vwt~---------~AHd~~ISgl~~n~~~p~~l~t---~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 354 ------VYYFDIRNPGKPVWTL---------KAHDDEISGLSVNIQTPGLLST---ASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred ------EEeeecCCCCCceeEE---------EeccCCcceEEecCCCCcceee---ccccceEEEEeecCCCCccccc
Confidence 444554322 2 2222 4566778888888866533333 2245567777776555544433
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.058 Score=57.73 Aligned_cols=142 Identities=19% Similarity=0.194 Sum_probs=79.4
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccc--cchhh-------hHHHH------hCCcEE
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDMR-------AQYLR------SKGILV 591 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~--~~~~~-------~~~l~------~~G~~v 591 (776)
+.+....+..+.+|++...+. +...|+||++-||||+......|.. .+... ...+. .+-..+
T Consensus 42 ~~v~~~~~~~lfy~f~es~~~---~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anl 118 (433)
T PLN03016 42 IGIGEDENVQFFYYFIKSENN---PKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANI 118 (433)
T ss_pred EEecCCCCeEEEEEEEecCCC---cccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcE
Confidence 333333456788888875442 2567999999999998763221110 00000 00111 123678
Q ss_pred EEECC-CCCCCCchhhhhhhhhccCC-ccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhh----C-----
Q 004067 592 WKLDN-RGTARRGLKFEASIKHNCGR-IDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR----F----- 659 (776)
Q Consensus 592 ~~~d~-rg~g~~~~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~----~----- 659 (776)
+.+|. -|.|.|-..... ..... .+++|+..++....++ +......+.|+|.|+||..+-.+|.. .
T Consensus 119 lfiDqPvGtGfSy~~~~~---~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 119 IFLDQPVGSGFSYSKTPI---DKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred EEecCCCCCCccCCCCCC---CccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 88894 456654211110 00111 1235666666654443 43345689999999999987777653 1
Q ss_pred -CCceEEEEEcCCCCC
Q 004067 660 -PDVFQCAVSGAPVTS 674 (776)
Q Consensus 660 -~~~~~~~v~~~~~~~ 674 (776)
+--++++++..|+.+
T Consensus 196 ~~inLkGi~iGNg~t~ 211 (433)
T PLN03016 196 PPINLQGYMLGNPVTY 211 (433)
T ss_pred CcccceeeEecCCCcC
Confidence 114688888888765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.72 Score=49.48 Aligned_cols=304 Identities=11% Similarity=0.084 Sum_probs=138.3
Q ss_pred ceEEEEe--CCCcEEEEeCCCCccc---eecCC---CCCCCccCceeCCCCCEEEEEECC--cEEEEecCCCceeEE--e
Q 004067 139 KKIIMVP--LPDGIYFQDLSCSKPE---LKLSS---SSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQL--T 206 (776)
Q Consensus 139 g~~l~~~--~~~~l~~~d~~~~~~~---~~l~~---~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~l--t 206 (776)
.++|++. .++.|-+.|.....-+ ++|.. +.. -+....|-| |+..+....+ .+..||++++...-. -
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n-AifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~ 140 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN-AIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLN 140 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccc-eeEeeccCC-CceeEEEccCCceeeeeeeccceeecceee
Confidence 3444433 5666777765443211 02221 122 267789999 7766665544 499999998876543 2
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
.+... -+....|.|+...++.....++....|.+...+.... +.. .
T Consensus 141 ~GH~~-----------------SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~--e~~---------------~ 186 (720)
T KOG0321|consen 141 LGHTG-----------------SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL--EEF---------------D 186 (720)
T ss_pred ccccc-----------------ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH--HHH---------------h
Confidence 22211 1446779998886666555555555555544331110 000 0
Q ss_pred EEEEEcCCCceEEEEccc-CCCCCCCCcceEEE---EEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC--
Q 004067 287 LGVVSAAGGPVSWMDLQC-GGTDQNYDEEYLAR---VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-- 360 (776)
Q Consensus 287 l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~---~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-- 360 (776)
..+++.-.+..+...... ..+........+.. +.+..|...|+.... .+..|.+||+..... .+...-.
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~--~~r~ep~~~ 261 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYT--AYRQEPRGS 261 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeeccccc--ccccCCCcc
Confidence 111111111000000000 00000112222222 556667766765542 577899999965321 1111000
Q ss_pred -ceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCceeecccc--C----CeEEEEEEeecCCCcEEEEEE
Q 004067 361 -SWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITE--G----DWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 361 -~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~--~----~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.+-..+..+ ...-.+.-|. |..+|++=.++ .||.|+..+-....+.. + .+.+.+ ..|+|+.+++-.+
T Consensus 262 ~~~~t~skrs-~G~~nL~lDssGt~L~AsCtD~--sIy~ynm~s~s~sP~~~~sg~~~~sf~vks--~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 262 DKYPTHSKRS-VGQVNLILDSSGTYLFASCTDN--SIYFYNMRSLSISPVAEFSGKLNSSFYVKS--ELSPDDCSLLSGS 336 (720)
T ss_pred cCccCcccce-eeeEEEEecCCCCeEEEEecCC--cEEEEeccccCcCchhhccCcccceeeeee--ecCCCCceEeccC
Confidence 000000000 0000011122 23455554455 89999976654443322 2 122233 3689998755544
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
... ...+|.++- -. ..+..|..+.. +..+.|.|.-..=+.+++.+. .+.+|++.++
T Consensus 337 sd~---~ayiw~vs~--~e----~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~---~~kiW~l~~~ 393 (720)
T KOG0321|consen 337 SDE---QAYIWVVSS--PE----APPALLLGHTREVTTVRWLPSATTPVATCSDDF---RVKIWRLSNG 393 (720)
T ss_pred CCc---ceeeeeecC--cc----CChhhhhCcceEEEEEeeccccCCCceeeccCc---ceEEEeccCc
Confidence 433 357777763 11 23444554442 455666654433344443333 2444454443
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.035 Score=69.98 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.|+++||.++... .|..++..|. .++.|+.++.+|++..... ...++++.+.+........
T Consensus 1069 ~~l~~lh~~~g~~~-------~~~~l~~~l~-~~~~v~~~~~~g~~~~~~~----------~~~l~~la~~~~~~i~~~~ 1130 (1296)
T PRK10252 1069 PTLFCFHPASGFAW-------QFSVLSRYLD-PQWSIYGIQSPRPDGPMQT----------ATSLDEVCEAHLATLLEQQ 1130 (1296)
T ss_pred CCeEEecCCCCchH-------HHHHHHHhcC-CCCcEEEEECCCCCCCCCC----------CCCHHHHHHHHHHHHHhhC
Confidence 56889999776543 2334455553 4699999999988644210 1123334333322222211
Q ss_pred CCCCcEEEEeechHHHHHHHHHhh---CCCceEEEEEcCC
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAP 671 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~---~~~~~~~~v~~~~ 671 (776)
...++.++||||||.++..+|.+ +++.+..+++..+
T Consensus 1131 -~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1131 -PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred -CCCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 22479999999999999999885 4677777776654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.3 Score=45.17 Aligned_cols=150 Identities=12% Similarity=0.035 Sum_probs=86.1
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 389 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (776)
.+|...+..+..-|+++ ++..+ .+..|++|.- +...+.+..|.+-. +++...++.-+.+...
T Consensus 137 ~gH~asVWAv~~l~e~~-~vTgs----aDKtIklWk~-~~~l~tf~gHtD~V------------RgL~vl~~~~flScsN 198 (745)
T KOG0301|consen 137 QGHTASVWAVASLPENT-YVTGS----ADKTIKLWKG-GTLLKTFSGHTDCV------------RGLAVLDDSHFLSCSN 198 (745)
T ss_pred CCcchheeeeeecCCCc-EEecc----CcceeeeccC-Cchhhhhccchhhe------------eeeEEecCCCeEeecC
Confidence 46777788888888884 33333 4667899874 22334444443320 1112223322334456
Q ss_pred CCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeE
Q 004067 390 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKH 468 (776)
Q Consensus 390 ~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~ 468 (776)
+| .|.+|+++|.-....-.+...+.++. ...++. ++++..+++. ..+|..+. -.+.|+-.. .++
T Consensus 199 Dg--~Ir~w~~~ge~l~~~~ghtn~vYsis-~~~~~~-~Ivs~gEDrt--lriW~~~e---------~~q~I~lPttsiW 263 (745)
T KOG0301|consen 199 DG--SIRLWDLDGEVLLEMHGHTNFVYSIS-MALSDG-LIVSTGEDRT--LRIWKKDE---------CVQVITLPTTSIW 263 (745)
T ss_pred Cc--eEEEEeccCceeeeeeccceEEEEEE-ecCCCC-eEEEecCCce--EEEeecCc---------eEEEEecCccceE
Confidence 67 89999998887777776665555554 334444 5666666654 77887763 234444433 466
Q ss_pred EEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 469 VAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 469 ~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
.+.+=++|. ++..+|. +-|+++..
T Consensus 264 sa~~L~NgD-Ivvg~SD----G~VrVfT~ 287 (745)
T KOG0301|consen 264 SAKVLLNGD-IVVGGSD----GRVRVFTV 287 (745)
T ss_pred EEEEeeCCC-EEEeccC----ceEEEEEe
Confidence 776666765 4444432 24666554
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.063 Score=56.13 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=78.4
Q ss_pred CceEEEEEcC-CCCcccccccccccc-hhhhHHHHhCCcEEEEECCCCCCCCchhh---hhhhhhccCCccHHHHHHHHH
Q 004067 553 PYKTLISVYG-GPCVQLVCDSWINTV-DMRAQYLRSKGILVWKLDNRGTARRGLKF---EASIKHNCGRIDAEDQLTGAE 627 (776)
Q Consensus 553 ~~p~vl~~HG-~~~~~~~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rg~g~~~~~~---~~~~~~~~~~~~~~D~~~~i~ 627 (776)
..|+-|++-| |+.+ ..|.... ..+..+.++.|-.|+...+|=.|.+...- ...+..--....+.|+..+|+
T Consensus 85 ~gPiFLmIGGEgp~~----~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~ 160 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPES----DKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIK 160 (514)
T ss_pred CCceEEEEcCCCCCC----CCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHH
Confidence 3478777766 2222 2342221 13356667889999999999887552110 111111111234778888888
Q ss_pred HHHHcC-CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 628 WLIKQG-LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 628 ~l~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.+..+. .-+..+.+.+|.||-|.++.++=..+|+++.+.|+.++..
T Consensus 161 ~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 161 AMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred HHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 887764 3344599999999999999999999999998888776543
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.41 Score=53.36 Aligned_cols=140 Identities=13% Similarity=0.150 Sum_probs=81.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-----EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-----ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
.+.+++.|+||+.+|++.... ..||+-.+.++.. +.+.. +.....+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~----~~l~vg~~~~~~~~~~~~~~~~~-------------------------~~~Lt~P 414 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG----DSVYVGSLTPGASIGVHSWGVTA-------------------------DGRLTSP 414 (599)
T ss_pred CccceEEcCCCceEEEEcCCC----cEEEEeccCCCCccccccceeec-------------------------cCcccCC
Confidence 567899999999999996532 4688877644432 22221 2346677
Q ss_pred EEeecCCCceEEEEeCC----Cc-EEEEeCCCCccceecCC--CCCCCccCceeCCCCCEEEEEEC----CcEEEEecC-
Q 004067 131 EWVKTSSKKKIIMVPLP----DG-IYFQDLSCSKPELKLSS--SSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLL- 198 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~~~----~~-l~~~d~~~~~~~~~l~~--~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~- 198 (776)
+|.+ +| ++..... .. +.+..- +|+.. .+.. -.+..+..++.|+||-++|++.+ .+|++--+.
T Consensus 415 S~d~---~g-~vWtvd~~~~~~~vl~v~~~-~G~~~-~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R 488 (599)
T PRK13613 415 SWDG---RG-DLWVVDRDPADPRLLWLLQG-DGEPV-EVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVR 488 (599)
T ss_pred cCcC---CC-CEEEecCCCCCceEEEEEcC-CCcEE-EeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEe
Confidence 8888 77 5554421 22 334433 44443 2222 11225888999999999999986 566655443
Q ss_pred --CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEE
Q 004067 199 --INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAF 244 (776)
Q Consensus 199 --~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~ 244 (776)
+|. +.|+.--. ... ++..+.++.|..++. |+.
T Consensus 489 ~~~G~-~~l~~~~~---l~~---------~l~~v~~~~W~~~~s-L~V 522 (599)
T PRK13613 489 DAKAV-VSVEEFRS---LAP---------ELEDVTDMSWAGDSQ-LVV 522 (599)
T ss_pred CCCCc-EEeeccEE---ecc---------CCCccceeEEcCCCE-EEE
Confidence 444 44533110 001 111245788999887 444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.58 Score=49.21 Aligned_cols=220 Identities=15% Similarity=0.156 Sum_probs=112.2
Q ss_pred cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCC
Q 004067 230 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 309 (776)
Q Consensus 230 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 309 (776)
+..+.|+.||..|+..+.| ..+.|||.-..|....- .
T Consensus 53 VN~LeWn~dG~lL~SGSDD------------------------------------~r~ivWd~~~~KllhsI-~------ 89 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGSDD------------------------------------TRLIVWDPFEYKLLHSI-S------ 89 (758)
T ss_pred ecceeecCCCCEEeecCCc------------------------------------ceEEeecchhcceeeee-e------
Confidence 5688999999998876643 56789998765543321 1
Q ss_pred CCCcceEEEEEeccCC-eEEEEEEeecCceEEEEEEECCCCceEEEE---EeccCceeecccccccCCCCccccCCeEEE
Q 004067 310 NYDEEYLARVNWMHGN-ILTAQVLNRSQTKLKVLKFDIKTGQRKVIL---VEELDSWVNLHDCFTPLDKGVTKYSGGFIW 385 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (776)
+++...|..+.|-|-. ..++.+. ..+..|+++|++..+..-.. ++....|........-... ...+-..+|
T Consensus 90 TgHtaNIFsvKFvP~tnnriv~sg---AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~--~p~~Phtfw 164 (758)
T KOG1310|consen 90 TGHTANIFSVKFVPYTNNRIVLSG---AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIAT--APNGPHTFW 164 (758)
T ss_pred cccccceeEEeeeccCCCeEEEec---cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheec--CCCCCceEE
Confidence 5677889999999953 2444332 25677999998752221111 1111123221110000000 011113666
Q ss_pred EeccCCceEEEEEeCCC--------ceeeccccCCeE--EEEEEeecCCCcEEEEEEccCCCceeeEEEEE-----eCCC
Q 004067 386 ASEKTGFRHLYLHDING--------TCLGPITEGDWM--VEQIVGVNEASGQVYFTGTLDGPLESHLYCAK-----LYPD 450 (776)
Q Consensus 386 ~s~~~g~~~l~~~~~~g--------~~~~~lt~~~~~--~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~-----~~~~ 450 (776)
+..++| .|..+|+.. +-...++.-... ...-+..||...+.+..+..+ | ...||... +..+
T Consensus 165 sasEDG--tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd-p-farLYD~Rr~lks~~s~ 240 (758)
T KOG1310|consen 165 SASEDG--TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD-P-FARLYDRRRVLKSFRSD 240 (758)
T ss_pred EecCCc--ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC-c-hhhhhhhhhhccCCCCC
Confidence 777788 677777543 112222221111 111223677665444433332 2 24555511 1112
Q ss_pred CCCccccc-----e------eecCCCC--------eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEe
Q 004067 451 WNHTLEAP-----V------KLTNGKG--------KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 451 g~~~~~~~-----~------~l~~~~~--------~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (776)
|.....++ . .|.+..+ ..-+.|+|+|+.|++..++ -.+|++++..++...+
T Consensus 241 ~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g----EhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 241 GTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG----EHVYLFDVNEDKSPTP 310 (758)
T ss_pred ccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC----eEEEEEeecCCCCcee
Confidence 22111111 0 0111112 2235999999999998766 3599999887765544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=2.7 Score=41.30 Aligned_cols=118 Identities=13% Similarity=0.082 Sum_probs=68.6
Q ss_pred ccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 172 VIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
++...|+||.+.|..+.+. .|..++.++.-.+.+...+-. + .+++.|.-+|+..+. ++
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--------D---------pE~Ieyig~n~fvi~---dE 147 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--------D---------PETIEYIGGNQFVIV---DE 147 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--------C---------hhHeEEecCCEEEEE---eh
Confidence 7889999999998777765 466777776666666544321 1 346677777764432 22
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE----EEEcccCCCCCCCCcceEEEEEeccCC
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS----WMDLQCGGTDQNYDEEYLARVNWMHGN 325 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~SpDg 325 (776)
.... .-++.+|.++.... .+++.. ..+.......++|+|..
T Consensus 148 R~~~-------------------------------l~~~~vd~~t~~~~~~~~~i~L~~----~~k~N~GfEGlA~d~~~ 192 (316)
T COG3204 148 RDRA-------------------------------LYLFTVDADTTVISAKVQKIPLGT----TNKKNKGFEGLAWDPVD 192 (316)
T ss_pred hcce-------------------------------EEEEEEcCCccEEeccceEEeccc----cCCCCcCceeeecCCCC
Confidence 2211 12233333332211 222211 12225567789999999
Q ss_pred eEEEEEEeecCceEEEEEEEC
Q 004067 326 ILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 326 ~~l~~~~~~~~~~~~l~~~d~ 346 (776)
+.++++..+ +...||.++.
T Consensus 193 ~~l~~aKEr--~P~~I~~~~~ 211 (316)
T COG3204 193 HRLFVAKER--NPIGIFEVTQ 211 (316)
T ss_pred ceEEEEEcc--CCcEEEEEec
Confidence 877777654 4566888873
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.1 Score=55.41 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=82.9
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhH----HHH------hCCcEEEEEC
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ----YLR------SKGILVWKLD 595 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~----~l~------~~G~~v~~~d 595 (776)
.+.+....++.+.+|++..... +...|+||++-||||+..+...+..--..... .|. .+--.++.+|
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~~---P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd 124 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESENN---PETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLD 124 (454)
T ss_pred eEECCCCCCceEEEEEEEccCC---CCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEe
Confidence 3555545788999999986543 24569999999999988654211110000000 011 1123466667
Q ss_pred CC-CCCCCchhhhhhhhhccCCccHHHHHHHH-HHHHHcCCCCCCcEEEEeechHHHHHHHHHhh----CC------Cce
Q 004067 596 NR-GTARRGLKFEASIKHNCGRIDAEDQLTGA-EWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR----FP------DVF 663 (776)
Q Consensus 596 ~r-g~g~~~~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~----~~------~~~ 663 (776)
.| |.|.|=.. .......-...+..|...++ +|+.+.+.--...+.|.|-|++|..+-.+|.. +. --+
T Consensus 125 ~PvGvGFSYs~-~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNL 203 (454)
T KOG1282|consen 125 QPVGVGFSYSN-TSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINL 203 (454)
T ss_pred cCCcCCccccC-CCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccc
Confidence 65 33433110 00000111122356665554 46665555566789999999999888777753 11 136
Q ss_pred EEEEEcCCCCC
Q 004067 664 QCAVSGAPVTS 674 (776)
Q Consensus 664 ~~~v~~~~~~~ 674 (776)
++.++..|+++
T Consensus 204 kG~~IGNg~td 214 (454)
T KOG1282|consen 204 KGYAIGNGLTD 214 (454)
T ss_pred eEEEecCcccC
Confidence 89999998876
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.06 Score=55.86 Aligned_cols=98 Identities=16% Similarity=0.092 Sum_probs=60.7
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcE---EEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~---v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
.++++||...... .+..+...+...|+. ++.+++++....... ....+.+.+-++.+...
T Consensus 61 pivlVhG~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~ql~~~V~~~l~~ 123 (336)
T COG1075 61 PIVLVHGLGGGYG-------NFLPLDYRLAILGWLTNGVYAFELSGGDGTYSL----------AVRGEQLFAYVDEVLAK 123 (336)
T ss_pred eEEEEccCcCCcc-------hhhhhhhhhcchHHHhcccccccccccCCCccc----------cccHHHHHHHHHHHHhh
Confidence 5677899633221 233334556777777 777777644111100 01133344545555544
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCC--CceEEEEEcCCC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFP--DVFQCAVSGAPV 672 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~--~~~~~~v~~~~~ 672 (776)
. ...++.++||||||..+.+++...+ ..++..+..++.
T Consensus 124 ~--ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 124 T--GAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred c--CCCceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 3 3478999999999999999998877 677877776554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.73 Score=44.58 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=64.1
Q ss_pred CccCceeCCCCC-EEEEEECC--cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 171 PVIDPHLSSDGT-MIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 171 ~~~~~~~SpDg~-~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
+...+.++|--+ .++|.+.. -.+++|+.+++..++.....+ +.+.|.. .|||||+.| |.+.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHG--------------vfs~dG~~L-YATE 132 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHG--------------VFSPDGRLL-YATE 132 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeeccc--------------ccCCCCcEE-Eeec
Confidence 466789999655 56666653 478889988876555443332 2233322 489999855 5664
Q ss_pred cCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeE
Q 004067 248 DSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL 327 (776)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~ 327 (776)
++.. ..+.-|-+||...+-.+.=.. ..+.-.--.+.|++||+.
T Consensus 133 ndfd------------------------------~~rGViGvYd~r~~fqrvgE~-------~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 133 NDFD------------------------------PNRGVIGVYDAREGFQRVGEF-------STHGIGPHEVTLMADGRT 175 (366)
T ss_pred CCCC------------------------------CCCceEEEEecccccceeccc-------ccCCcCcceeEEecCCcE
Confidence 3321 123557888877432222111 222223346899999998
Q ss_pred EEEEE
Q 004067 328 TAQVL 332 (776)
Q Consensus 328 l~~~~ 332 (776)
++...
T Consensus 176 lvvan 180 (366)
T COG3490 176 LVVAN 180 (366)
T ss_pred EEEeC
Confidence 77663
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.14 Score=54.81 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=80.8
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccccccc--chhhh-------HHHH------hCCcE
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT--VDMRA-------QYLR------SKGIL 590 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~--~~~~~-------~~l~------~~G~~ 590 (776)
.+.+....+..+.+|++..... +...|+|+++-||||+......+... +.... ..+. .+-..
T Consensus 43 y~~v~~~~~~~lf~~f~es~~~---~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~an 119 (437)
T PLN02209 43 YIGIGEEENVQFFYYFIKSDKN---PQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTAN 119 (437)
T ss_pred EEEecCCCCeEEEEEEEecCCC---CCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCc
Confidence 3444433466788888875542 24679999999999987643222110 00000 0111 12357
Q ss_pred EEEECC-CCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhh----C-----
Q 004067 591 VWKLDN-RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR----F----- 659 (776)
Q Consensus 591 v~~~d~-rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~----~----- 659 (776)
++.+|. -|.|.|-...... ......+.+|+..++....++ +.....++.|+|.|+||..+-.+|.. +
T Consensus 120 llfiDqPvGtGfSy~~~~~~--~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~ 197 (437)
T PLN02209 120 IIFLDQPVGSGFSYSKTPIE--RTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCN 197 (437)
T ss_pred EEEecCCCCCCccCCCCCCC--ccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccC
Confidence 888884 4555542111100 000112345666666655443 33344689999999999977777643 1
Q ss_pred -CCceEEEEEcCCCCC
Q 004067 660 -PDVFQCAVSGAPVTS 674 (776)
Q Consensus 660 -~~~~~~~v~~~~~~~ 674 (776)
+--++++++..|+++
T Consensus 198 ~~inl~Gi~igng~td 213 (437)
T PLN02209 198 PPINLQGYVLGNPITH 213 (437)
T ss_pred CceeeeeEEecCcccC
Confidence 113678888888776
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.052 Score=51.40 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=39.6
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+.++.+.+|..+|......+-+.. ..+++...+ +||.-.+.-....+-.+|.+-|++
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~W----Pg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIW----PGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhC----CCCEEEEee-cCceeeeehhchHHHHHHHHHHHh
Confidence 467778899999886665555543 556776676 699766666666777777777664
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.98 E-value=7.6 Score=43.22 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=40.0
Q ss_pred EEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccCCeEEEE
Q 004067 339 LKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQ 417 (776)
Q Consensus 339 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~~~~~~~ 417 (776)
..|..+|+.+|+..--.....+. ..+.....+.++|..+.+| .|+.+|.++|+.. +...+.....+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~-----------~~~~l~t~g~lvf~g~~~G--~l~a~D~~TGe~lw~~~~g~~~~a~ 507 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPL-----------WGGVLATAGDLVFYGTLEG--YFKAFDAKTGEELWKFKTGSGIVGP 507 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCC-----------CCcceEECCcEEEEECCCC--eEEEEECCCCCEeEEEeCCCCceec
Confidence 46888888888765433322111 0111112445777777777 8999998887632 22112212223
Q ss_pred EEeecCCCcE
Q 004067 418 IVGVNEASGQ 427 (776)
Q Consensus 418 ~~~~s~dg~~ 427 (776)
+..+..+||+
T Consensus 508 P~ty~~~G~q 517 (527)
T TIGR03075 508 PVTYEQDGKQ 517 (527)
T ss_pred CEEEEeCCEE
Confidence 4444566664
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=6.3 Score=42.24 Aligned_cols=141 Identities=12% Similarity=0.005 Sum_probs=72.4
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCcee
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWV 363 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~ 363 (776)
.++-.|+...++...+.- ........+..||||++++..+ ..|.+||+++++.-.-++ +.++.-.
T Consensus 124 ~~v~~~~~~~~~~~~~~~--------~~~~~~~sl~is~D~~~l~~as------~~ik~~~~~~kevv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 124 LKVVYILEKEKVIIRIWK--------EQKPLVSSLCISPDGKILLTAS------RQIKVLDIETKEVVITFTGHGSPVRT 189 (541)
T ss_pred eeEEEEecccceeeeeec--------cCCCccceEEEcCCCCEEEecc------ceEEEEEccCceEEEEecCCCcceEE
Confidence 456777777777766632 2334567789999999877653 459999999988654443 3333110
Q ss_pred ecccccccCCCCccccCC-eEEEEeccCC--ceEEEEEeCCCce---eeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 364 NLHDCFTPLDKGVTKYSG-GFIWASEKTG--FRHLYLHDINGTC---LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~g--~~~l~~~~~~g~~---~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
- .|.-. .++. +-+|.+.... ...+|+.+.+.++ ...++-.+..+..-.+...|+...+..+....+
T Consensus 190 ~---~f~~~-----~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~ 261 (541)
T KOG4547|consen 190 L---SFTTL-----IDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIP 261 (541)
T ss_pred E---EEEEe-----ccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccC
Confidence 0 01110 1111 2344443333 2355555543332 233444444444333345566544444443333
Q ss_pred ceeeEEEEEe
Q 004067 438 LESHLYCAKL 447 (776)
Q Consensus 438 ~~~~l~~~~~ 447 (776)
...+++.-++
T Consensus 262 g~v~~~~~nl 271 (541)
T KOG4547|consen 262 GIVHLKLSNL 271 (541)
T ss_pred ceeeeccccH
Confidence 3455554444
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=4.2 Score=40.16 Aligned_cols=176 Identities=17% Similarity=0.141 Sum_probs=96.0
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceeccc
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM 227 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~ 227 (776)
+++.+||=.-......++... .+..+.+++| +|+.+..+.||++.-.+.-.+.-..+..
T Consensus 75 NkviIWDD~k~~~i~el~f~~--~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~----------------- 133 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNS--EIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR----------------- 133 (346)
T ss_pred ceEEEEecccCcEEEEEEecc--ceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc-----------------
Confidence 568888833333322444332 3777888777 8999999999999876543322211111
Q ss_pred CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce---EEEEccc
Q 004067 228 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV---SWMDLQC 304 (776)
Q Consensus 228 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~---~~l~~~~ 304 (776)
-.|.| |.......+ .. -+.|| |- ...+|.+.|+...+. ..+
T Consensus 134 -------~NPkG--lC~~~~~~~---k~----------------~LafP--g~--k~GqvQi~dL~~~~~~~p~~I---- 177 (346)
T KOG2111|consen 134 -------SNPKG--LCSLCPTSN---KS----------------LLAFP--GF--KTGQVQIVDLASTKPNAPSII---- 177 (346)
T ss_pred -------cCCCc--eEeecCCCC---ce----------------EEEcC--CC--ccceEEEEEhhhcCcCCceEE----
Confidence 12444 221110000 00 00111 11 114577778776655 444
Q ss_pred CCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE-EEEeccC--ceeecccccccCCCCccccCC
Q 004067 305 GGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV-ILVEELD--SWVNLHDCFTPLDKGVTKYSG 381 (776)
Q Consensus 305 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 381 (776)
..++..|..++.+-+|..++..+.. -.-|.++|..+|+.-. +-...+. .+-. .|+| +.
T Consensus 178 -----~AH~s~Iacv~Ln~~Gt~vATaStk---GTLIRIFdt~~g~~l~E~RRG~d~A~iy~i---aFSp--------~~ 238 (346)
T KOG2111|consen 178 -----NAHDSDIACVALNLQGTLVATASTK---GTLIRIFDTEDGTLLQELRRGVDRADIYCI---AFSP--------NS 238 (346)
T ss_pred -----EcccCceeEEEEcCCccEEEEeccC---cEEEEEEEcCCCcEeeeeecCCchheEEEE---EeCC--------Cc
Confidence 5688889999999999988877643 3458899998887533 2222111 1111 2344 23
Q ss_pred eEEEEeccCCceEEEEEe
Q 004067 382 GFIWASEKTGFRHLYLHD 399 (776)
Q Consensus 382 ~~~~~s~~~g~~~l~~~~ 399 (776)
.++.++.+-|.-||+..-
T Consensus 239 s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred cEEEEEcCCCeEEEEEee
Confidence 355566666756666554
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.053 Score=56.28 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=76.0
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
++..+|.|... +.+..++|+++||+--.. ..... -+ -.+.|+. ...+|+.++||- |-.|--+........|
T Consensus 121 LYlNVW~P~~~---p~n~tVlVWiyGGGF~sG-t~SLd-vY--dGk~la~~envIvVs~NYRv-G~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 121 LYLNVWAPAAD---PYNLTVLVWIYGGGFYSG-TPSLD-VY--DGKFLAAVENVIVVSMNYRV-GAFGFLYLPGHPEAPG 192 (601)
T ss_pred eEEEEeccCCC---CCCceEEEEEEcCccccC-Cccee-ee--ccceeeeeccEEEEEeeeee-ccceEEecCCCCCCCC
Confidence 77888888421 134459999999642111 00000 01 1334554 457888999982 2222111111112222
Q ss_pred CccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCC
Q 004067 616 RIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 674 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~ 674 (776)
.--+.|+.-|++|+.++ ..-|+++|.++|.|+|+.-+..-+.. -..+|+.+|+.+|..+
T Consensus 193 NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 193 NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 33378999999999886 33589999999999998765443322 1236788888777543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.9 Score=42.43 Aligned_cols=198 Identities=10% Similarity=0.050 Sum_probs=93.4
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCc------EEEEeCCC--Cccc-------eecCCCCCC-------CccCceeCCCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDG------IYFQDLSC--SKPE-------LKLSSSSCS-------PVIDPHLSSDGT 182 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~------l~~~d~~~--~~~~-------~~l~~~~~~-------~~~~~~~SpDg~ 182 (776)
.+++...+.| .+|++++++.++. +|..++.. +... ..|....+. ....+++.+||.
T Consensus 20 GGlSgl~~~~--~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDP--DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred CcEeeEEEeC--CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4677888883 1677777776666 77666554 1111 022221111 234566666665
Q ss_pred EEEEE-EC------CcEEEEecCCCceeEEeeCCCCCce-ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCe
Q 004067 183 MIAFV-RD------CELHVLNLLINEQRQLTHGANGNTV-THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPR 254 (776)
Q Consensus 183 ~la~~-~~------~~l~~~~l~~g~~~~lt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 254 (776)
.++-. .. ..|+.++.++...+.+.. +..... ..+...+ ..-.-.++++++|||+.|+......-..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v-P~~~~~~~~~~~~~---~~N~G~E~la~~~dG~~l~~~~E~~l~~-- 171 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV-PAAFLPDANGTSGR---RNNRGFEGLAVSPDGRTLFAAMESPLKQ-- 171 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEcc-ccccccccCccccc---cCCCCeEEEEECCCCCEEEEEECccccC--
Confidence 33222 23 358888877333333311 110000 0000000 0001257899999999877665321000
Q ss_pred EEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc--eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 255 FRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
.+.. ... .......|+.+|..++. ..........+........+.++.+-+|++.++.-.
T Consensus 172 -----d~~~----------~~~---~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 172 -----DGPR----------ANP---DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred -----CCcc----------ccc---ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 0000 000 00111567777877622 222111100000011456788999999999666543
Q ss_pred ee---cCceEEEEEEECCC
Q 004067 333 NR---SQTKLKVLKFDIKT 348 (776)
Q Consensus 333 ~~---~~~~~~l~~~d~~~ 348 (776)
.- ......||.+++..
T Consensus 234 ~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 234 DFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred cCCCCccceEEEEEEEccc
Confidence 31 12456788888754
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.82 E-value=8.3 Score=42.91 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=38.1
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEE-------EEeccCCe--EEEEEEeecCceEEEEEEECCC
Q 004067 278 AGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLAR-------VNWMHGNI--LTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~SpDg~--~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
.|+..-...|...|++||+.+.--.. ..++....+ +..-.||+ .++... .+...+|.+|.++
T Consensus 264 ~gdnl~~~s~vAld~~TG~~~W~~Q~------~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~---~K~G~~~vlDr~t 334 (527)
T TIGR03075 264 PGDNLYTSSIVARDPDTGKIKWHYQT------TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA---DRNGFFYVLDRTN 334 (527)
T ss_pred CCCCccceeEEEEccccCCEEEeeeC------CCCCCccccCCCCcEEEEeccCCcEEEEEEEe---CCCceEEEEECCC
Confidence 34444557799999999998764322 222222111 11224776 333332 2566799999999
Q ss_pred Cce
Q 004067 349 GQR 351 (776)
Q Consensus 349 g~~ 351 (776)
|+.
T Consensus 335 G~~ 337 (527)
T TIGR03075 335 GKL 337 (527)
T ss_pred Cce
Confidence 976
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.61 E-value=4.5 Score=42.04 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=51.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+|.+++|.|||+.++ +++. ..|++++.++.....+...+. +... ...+...+.++|.
T Consensus 3 ~P~~~a~~pdG~l~v--~e~~----G~i~~~~~~g~~~~~v~~~~~-------v~~~----------~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV--AERS----GRIWVVDKDGSLKTPVADLPE-------VFAD----------GERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEE--EETT----TEEEEEETTTEECEEEEE-TT-------TBTS----------TTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEE--EeCC----ceEEEEeCCCcCcceeccccc-------cccc----------ccCCcccceeccc
Confidence 458899999997644 4444 369999955444244443211 1000 0146778888882
Q ss_pred CCCceEEEEeCC----------CcEEEEeCCCC--c---cceec---CC--CCCCCccCceeCCCCC
Q 004067 136 SSKKKIIMVPLP----------DGIYFQDLSCS--K---PELKL---SS--SSCSPVIDPHLSSDGT 182 (776)
Q Consensus 136 ~~dg~~l~~~~~----------~~l~~~d~~~~--~---~~~~l---~~--~~~~~~~~~~~SpDg~ 182 (776)
-+...+|++... ..|.++.++.+ . .+..+ .. ........+.|.|||+
T Consensus 60 f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~ 126 (331)
T PF07995_consen 60 FASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK 126 (331)
T ss_dssp CCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE
T ss_pred cCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc
Confidence 222344444311 24777766554 1 11011 11 1111235589999993
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.089 Score=56.88 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=93.7
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecC-CCc
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLL-INE 201 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~-~g~ 201 (776)
.+|.++.|++ +-..|+-. .++.|.+||++.++..+.|+.+.. .+..+.|+|=|.+.|--+ +.|+-+||.. -|-
T Consensus 71 spIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~-~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc 146 (825)
T KOG0267|consen 71 SPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL-NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC 146 (825)
T ss_pred CcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhcccc-CcceeeeccceEEeccccccccceehhhhccCc
Confidence 4678888988 66666654 667999999999887756765544 366778999988775433 3467777765 222
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.... .+ ..| .+.-++++|||++++-...+
T Consensus 147 ~~~~----------~s-~~~-------vv~~l~lsP~Gr~v~~g~ed--------------------------------- 175 (825)
T KOG0267|consen 147 SHTY----------KS-HTR-------VVDVLRLSPDGRWVASGGED--------------------------------- 175 (825)
T ss_pred eeee----------cC-Ccc-------eeEEEeecCCCceeeccCCc---------------------------------
Confidence 2111 11 011 14467899999988754321
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..+.+||..-|+...- +..+.+.+..+.|.|-.-.+ +.+..+..+..||+++
T Consensus 176 ---~tvki~d~~agk~~~e--------f~~~e~~v~sle~hp~e~Ll----a~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 176 ---NTVKIWDLTAGKLSKE--------FKSHEGKVQSLEFHPLEVLL----APGSSDRTVRFWDLET 227 (825)
T ss_pred ---ceeeeecccccccccc--------cccccccccccccCchhhhh----ccCCCCceeeeeccce
Confidence 3467888876665432 12234444444555543222 2333566788888765
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.99 Score=49.68 Aligned_cols=142 Identities=11% Similarity=-0.007 Sum_probs=82.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.+++.|+||+.+|++.. . ..+++.... +..+.+.. ......++|++
T Consensus 336 ~~s~avS~dg~~~A~v~~-~----~~l~vg~~~-~~~~~~~~-------------------------~~~Lt~PS~d~-- 382 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA-S----GVWSVGDGD-RDAVLLDT-------------------------RPGLVAPSLDA-- 382 (557)
T ss_pred cccceEcCCCceEEEEcC-C----ceEEEecCC-Ccceeecc-------------------------CCccccCcCcC--
Confidence 478899999999999954 2 256666554 44444442 13467788988
Q ss_pred CCceEEEEeCCCcEEEE-eC-CCCccc-eecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEec--CCCceeEE-e
Q 004067 137 SKKKIIMVPLPDGIYFQ-DL-SCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNL--LINEQRQL-T 206 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~-d~-~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l--~~g~~~~l-t 206 (776)
+| ++....+++-.++ .. .+|+.. .......+..+..++.|+||-++|++.+ .+|++--+ .++..+.| +
T Consensus 383 -~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~ 460 (557)
T PRK13615 383 -QG-YVWSTPASDPRGLVAWGPDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTT 460 (557)
T ss_pred -CC-CEEEEeCCCceEEEEecCCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeee
Confidence 87 6766544332222 11 223333 1111122335888999999999999986 56765433 34444555 3
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
.--. ... +.....++.|..|++ |+...
T Consensus 461 ~p~~---l~~---------~l~~v~sl~W~~~~~-laVl~ 487 (557)
T PRK13615 461 TPLE---LLA---------SPGTPLDATWVDELD-VATLT 487 (557)
T ss_pred ccEE---ccc---------CcCcceeeEEcCCCE-EEEEe
Confidence 2110 000 111255788999887 55554
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.66 Score=44.22 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
.-+...+..++||||...++..+ .+..|-+|++
T Consensus 290 kyHsagvn~vAfspd~~lmAaas----kD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCELMAAAS----KDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCCCchhhhcc----CCceEEeeec
Confidence 44667889999999977777665 5667877764
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.059 Score=50.45 Aligned_cols=85 Identities=15% Similarity=0.061 Sum_probs=52.2
Q ss_pred CcEEEEECCCCCCCCchh-hhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC----C--
Q 004067 588 GILVWKLDNRGTARRGLK-FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----P-- 660 (776)
Q Consensus 588 G~~v~~~d~rg~g~~~~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----~-- 660 (776)
--.|++|-||-..-...- .............+.|+.+|.++.+++.. +...++|+|||.|+.+...++..+ |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 357888888843211100 00000111122348899999999888752 335799999999999999998753 2
Q ss_pred -CceEEEEEcCCCC
Q 004067 661 -DVFQCAVSGAPVT 673 (776)
Q Consensus 661 -~~~~~~v~~~~~~ 673 (776)
.++.|.++..++.
T Consensus 124 ~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 124 KRLVAAYLIGYPVT 137 (207)
T ss_pred hhhheeeecCcccc
Confidence 2455555555543
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.29 Score=44.89 Aligned_cols=101 Identities=26% Similarity=0.288 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcccccccccc-----------cchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhc--cCCccH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWIN-----------TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN--CGRIDA 619 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~-----------~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~--~~~~~~ 619 (776)
+..+++++||.+-... ..|.. .--+.+....+.||-|+..+.- ..+.|.+..... +....+
T Consensus 100 ~~kLlVLIHGSGvVrA--GQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N----~~~kfye~k~np~kyirt~v 173 (297)
T KOG3967|consen 100 PQKLLVLIHGSGVVRA--GQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPN----RERKFYEKKRNPQKYIRTPV 173 (297)
T ss_pred ccceEEEEecCceEec--chHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCc----hhhhhhhcccCcchhccchH
Confidence 4458999999432211 12211 1112355567789999988853 112222211110 111123
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC
Q 004067 620 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 661 (776)
Q Consensus 620 ~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~ 661 (776)
+...-....++.. .....|+++.||+||.+++.++.+.|+
T Consensus 174 eh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 174 EHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 3344444444332 256789999999999999999998875
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.1 Score=47.37 Aligned_cols=38 Identities=21% Similarity=0.086 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC
Q 004067 621 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP 660 (776)
Q Consensus 621 D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~ 660 (776)
.+...++....+. ...+|.++|||+||.+|..++....
T Consensus 13 ~i~~~~~~~~~~~--p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 13 LVLPLLKSALAQY--PDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHC--CCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444444332 4579999999999999999887653
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.087 Score=57.95 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcC-----C--CCCCcEEEEeechHHHHHHHHHhh
Q 004067 620 EDQLTGAEWLIKQG-----L--AKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 620 ~D~~~~i~~l~~~~-----~--id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
+=+..||+++.+.. + -.+..|+++||||||.+|-.++..
T Consensus 157 EYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl 202 (973)
T KOG3724|consen 157 EYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL 202 (973)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh
Confidence 34566666666531 1 125679999999999999877764
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.24 E-value=5.7 Score=38.55 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=84.1
Q ss_pred CCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEE
Q 004067 52 PGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYE 131 (776)
Q Consensus 52 ~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (776)
..|..+..++-+|||. +-|..... ..|=..|+.+|+..+.---. +..-+...
T Consensus 59 p~G~ap~dvapapdG~-VWft~qg~----gaiGhLdP~tGev~~ypLg~-----------------------Ga~Phgiv 110 (353)
T COG4257 59 PNGSAPFDVAPAPDGA-VWFTAQGT----GAIGHLDPATGEVETYPLGS-----------------------GASPHGIV 110 (353)
T ss_pred CCCCCccccccCCCCc-eEEecCcc----ccceecCCCCCceEEEecCC-----------------------CCCCceEE
Confidence 3566667888899996 55655443 45888899999987655210 11223445
Q ss_pred EeecCCCceEEEEeCCCcEEEEeCCCCccceecC----CCCCCCccCceeCCCCCEEEEEECCcEE-EEecCCCceeEEe
Q 004067 132 WVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLS----SSSCSPVIDPHLSSDGTMIAFVRDCELH-VLNLLINEQRQLT 206 (776)
Q Consensus 132 ~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~----~~~~~~~~~~~~SpDg~~la~~~~~~l~-~~~l~~g~~~~lt 206 (776)
..| ||..-+......|-++|-++.+.+ +++ ... .....+.|-++|. |-|+...-.| ..|...+..+..-
T Consensus 111 ~gp---dg~~Witd~~~aI~R~dpkt~evt-~f~lp~~~a~-~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfp 184 (353)
T COG4257 111 VGP---DGSAWITDTGLAIGRLDPKTLEVT-RFPLPLEHAD-ANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFP 184 (353)
T ss_pred ECC---CCCeeEecCcceeEEecCcccceE-EeecccccCC-CcccceeeCCCcc-EEEeeccccceecCcccCceeeec
Confidence 667 877444433336778888777766 322 222 2366788998886 5666553322 4455555444332
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
.-... ...++.-.|||. +.|.+.
T Consensus 185 aPqG~-----------------gpyGi~atpdGs-vwyasl 207 (353)
T COG4257 185 APQGG-----------------GPYGICATPDGS-VWYASL 207 (353)
T ss_pred cCCCC-----------------CCcceEECCCCc-EEEEec
Confidence 21110 023566889997 777653
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.4 Score=46.55 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=64.9
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEE-EEECCCCCCCCchhhhhhhhhccCCccH-HHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV-WKLDNRGTARRGLKFEASIKHNCGRIDA-EDQLTGAEWL 629 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v-~~~d~rg~g~~~~~~~~~~~~~~~~~~~-~D~~~~i~~l 629 (776)
-|-|+.|++.|.=. .++|.. .-.|.+.|.-. +.-|.|--|+. | -.|..++ +.+++.|+..
T Consensus 287 ~KPPL~VYFSGyR~----aEGFEg-----y~MMk~Lg~PfLL~~DpRleGGa---F------YlGs~eyE~~I~~~I~~~ 348 (511)
T TIGR03712 287 FKPPLNVYFSGYRP----AEGFEG-----YFMMKRLGAPFLLIGDPRLEGGA---F------YLGSDEYEQGIINVIQEK 348 (511)
T ss_pred CCCCeEEeeccCcc----cCcchh-----HHHHHhcCCCeEEeeccccccce---e------eeCcHHHHHHHHHHHHHH
Confidence 46699999988322 123322 12455666644 44588855543 1 1111111 2355555555
Q ss_pred HHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 630 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 630 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
.+.-..+.+.+++.|.|||.+-|+++++.-. -.|+|+.-|..+.
T Consensus 349 L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL~NL 392 (511)
T TIGR03712 349 LDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPLVNL 392 (511)
T ss_pred HHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcccch
Confidence 5544458889999999999999999999753 2688888888764
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.095 Score=46.64 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC---C----CceEEEEEcCCC
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF---P----DVFQCAVSGAPV 672 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---~----~~~~~~v~~~~~ 672 (776)
...+...++.+.++.. ..+|.+.|||+||.+|..++... . ..+.+..-.+|-
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~ 105 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPR 105 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S-
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCcc
Confidence 4456666666666543 37999999999999999988751 1 345555555554
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.8 Score=42.26 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=33.9
Q ss_pred EEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC
Q 004067 287 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 287 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
.-+||.++|++..+ +.+++......+-.|.-+ |+.++++ +....+||..
T Consensus 296 AnlwDVEtge~v~~--------LtGHd~ELtHcstHptQr-LVvTsSr---DtTFRLWDFR 344 (481)
T KOG0300|consen 296 ANLWDVETGEVVNI--------LTGHDSELTHCSTHPTQR-LVVTSSR---DTTFRLWDFR 344 (481)
T ss_pred ceeeeeccCceecc--------ccCcchhccccccCCcce-EEEEecc---CceeEeccch
Confidence 47899999998766 356777777777777665 5555544 4456777775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 776 | ||||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 5e-93 | ||
| 2dcm_A | 706 | The Crystal Structure Of S603a Mutated Prolyl Tripe | 2e-55 | ||
| 2d5l_A | 706 | Crystal Structure Of Prolyl Tripeptidyl Aminopeptid | 2e-55 | ||
| 2z3w_A | 706 | Prolyl Tripeptidyl Aminopeptidase Mutant E636a Leng | 4e-55 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 1e-39 | ||
| 1orv_A | 728 | Crystal Structure Of Porcine Dipeptidyl Peptidase I | 3e-35 | ||
| 2jid_A | 736 | Human Dipeptidyl Peptidase Iv In Complex With 1-(3, | 1e-34 | ||
| 3nox_A | 753 | Crystal Structure Of Human Dpp-Iv In Complex With S | 2e-34 | ||
| 2qt9_A | 766 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 2e-34 | ||
| 2bgr_A | 738 | Crystal Structure Of Hiv-1 Tat Derived Nonapeptides | 2e-34 | ||
| 1j2e_A | 740 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 2e-34 | ||
| 2qjr_A | 748 | Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf | 2e-34 | ||
| 3ccb_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A B | 2e-34 | ||
| 1r9n_A | 739 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 2e-34 | ||
| 1x70_A | 728 | Human Dipeptidyl Peptidase Iv In Complex With A Bet | 2e-34 | ||
| 2rip_A | 729 | Structure Of Dppiv In Complex With An Inhibitor Len | 2e-34 | ||
| 1pfq_A | 731 | Crystal Structure Of Human Apo Dipeptidyl Peptidase | 2e-34 | ||
| 1n1m_A | 728 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 3e-34 | ||
| 2rgu_A | 734 | Crystal Structure Of Complex Of Human Dpp4 And Inhi | 3e-34 | ||
| 2onc_A | 731 | Crystal Structure Of Human Dpp-4 Length = 731 | 3e-34 | ||
| 3q8w_A | 732 | A B-Aminoacyl Containing Thiazolidine Derivative An | 3e-34 | ||
| 2g5p_A | 726 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 3e-34 | ||
| 4a5s_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A N | 3e-34 | ||
| 1r9m_A | 733 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 3e-34 | ||
| 1u8e_A | 728 | Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Leng | 6e-34 | ||
| 3qbj_A | 748 | Crystal Structure Of Dipeptidyl Peptidase Iv In Com | 1e-33 | ||
| 1xfd_A | 723 | Structure Of A Human A-Type Potassium Channel Accel | 6e-33 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 9e-31 | ||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 1e-13 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 1e-13 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 1e-13 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 2e-13 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 4e-13 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 8e-13 | ||
| 3azo_A | 662 | Crystal Structure Of Puromycin Hydrolase Length = 6 | 2e-08 | ||
| 3azp_A | 662 | Crystal Structure Of Puromycin Hydrolase S511a Muta | 1e-07 |
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl Aminopeptidase Complexed With Substrate Length = 706 | Back alignment and structure |
|
| >pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase From Porphyromonas Gingivalis Length = 706 | Back alignment and structure |
|
| >pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Length = 706 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
| >pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) Length = 728 | Back alignment and structure |
|
| >pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4- Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine Length = 736 | Back alignment and structure |
|
| >pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With Sa-(+)-(6- (Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1, 2-A]pyrimidin- 2-Yl)(Morpholino)methanone Length = 753 | Back alignment and structure |
|
| >pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl Cyclohexylalanine Inhibitor Length = 766 | Back alignment and structure |
|
| >pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides Tat(1-9) Bound To The Active Site Of Dipeptidyl Peptidase Iv (Cd26) Length = 738 | Back alignment and structure |
|
| >pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv Length = 740 | Back alignment and structure |
|
| >pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf Length = 748 | Back alignment and structure |
|
| >pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Benzimidazole Derivative Length = 740 | Back alignment and structure |
|
| >pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution Length = 739 | Back alignment and structure |
|
| >pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino Acid Inhibitor Length = 728 | Back alignment and structure |
|
| >pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor Length = 729 | Back alignment and structure |
|
| >pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv / Cd26 Length = 731 | Back alignment and structure |
|
| >pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN INHIBITOR Length = 728 | Back alignment and structure |
|
| >pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor Length = 734 | Back alignment and structure |
|
| >pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4 Length = 731 | Back alignment and structure |
|
| >pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv Complex Length = 732 | Back alignment and structure |
|
| >pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv) Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor 21ac Length = 726 | Back alignment and structure |
|
| >pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval Heterocyclic Dpp4 Inhibitor Length = 740 | Back alignment and structure |
|
| >pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1 Ang. Resolution. Length = 733 | Back alignment and structure |
|
| >pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Length = 728 | Back alignment and structure |
|
| >pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With Inhibitor Length = 748 | Back alignment and structure |
|
| >pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase Family Length = 723 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662 | Back alignment and structure |
|
| >pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 776 | |||
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 0.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 0.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 0.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 0.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 0.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 3e-62 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 1e-55 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 2e-42 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 9e-27 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 5e-26 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 2e-25 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 5e-25 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 9e-24 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 9e-22 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 1e-19 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 4e-19 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 2e-17 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 6e-16 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 5e-15 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 2e-13 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 2e-13 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 7e-12 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 1e-11 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 8e-11 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 8e-11 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 2e-10 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 2e-09 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-09 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 8e-09 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 9e-09 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 2e-08 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 9e-08 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 9e-08 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 2e-07 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 3e-07 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 7e-07 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 1e-06 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 6e-06 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 1e-05 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 4e-05 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 2e-04 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 4e-04 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 7e-04 |
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 698 bits (1804), Expect = 0.0
Identities = 239/749 (31%), Positives = 370/749 (49%), Gaps = 45/749 (6%)
Query: 41 FSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSR-KVFSFDPKTCKQELVFSP 99
+LE I +PD + +T+L D ++ ++S+D + + L+
Sbjct: 23 LTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS 82
Query: 100 PDGGLDENNISPEEKLRRERLRERG-LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDL-SC 157
+S EEK RRER R G+ Y+W S + ++ PL +Y DL
Sbjct: 83 KVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW---SPDAQRLLFPLGGELYLYDLKQE 139
Query: 158 SKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHG 217
K ++ + D LS G ++F+R L V++L Q QLT + + +G
Sbjct: 140 GKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT-IGNG 198
Query: 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277
+AE++A EEMDR TGYWW+ D IA+ ++D S +P + + YP
Sbjct: 199 IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADR---TDVIEQRYPA 255
Query: 278 AGASNVKVRLGVVS-AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ 336
AG +NV+V+LGV+S A W+DL + YLARVNW L+ Q +R Q
Sbjct: 256 AGDANVQVKLGVISPAEQAQTQWIDLG------KEQDIYLARVNWRDPQHLSFQRQSRDQ 309
Query: 337 TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLY 396
KL +++ + + Q++V+ E +WV LH+ LD G +W+SE+TGF+HLY
Sbjct: 310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD------DGSILWSSERTGFQHLY 363
Query: 397 LHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 456
D G +T G+W V++++ V+E +G YF ++ ES +Y L
Sbjct: 364 RIDSKGKAA-ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG------ 416
Query: 457 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 516
P +L+ G H A N +VD + +PP+I L +G + L E L P+
Sbjct: 417 QPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRA-NGEKIATLVENDLADPKH 475
Query: 517 KRLQLE----PPDIVQIQANDG-TVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQL 568
+ P + + A DG T L ++ KP D ++ Y + VYGGP Q
Sbjct: 476 PYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAK----RYPVAVYVYGGPASQT 531
Query: 569 VCDSWINTVD-MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 627
V DSW D + QYL +G +V+ LDNRGT RRG F ++ G ++ DQL G
Sbjct: 532 VTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVA 591
Query: 628 WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 687
WL +Q IG+ GWS GGY++ + LA+ D + C V+GAPVT W YD+ YTE+YM
Sbjct: 592 WLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYM 651
Query: 688 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 747
LP+ + GY + V+ H+ ++ LLL+HGM D+NV F ++ L++AL +P+E++
Sbjct: 652 DLPARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMT 711
Query: 748 FPDERHMPRRHRDRIYMEERIWEFIERTL 776
+P +H D ++ F+ R L
Sbjct: 712 YPGAKHGLSGA-DALHRYRVAEAFLGRCL 739
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 626 bits (1616), Expect = 0.0
Identities = 173/673 (25%), Positives = 289/673 (42%), Gaps = 41/673 (6%)
Query: 112 EEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSP 171
+ + + + + + ++++ G+ D+ K + +
Sbjct: 67 NALMPEGCKFQTTDAFPSFRTL--DAGRGLVVLFTQGGLVGFDMLARK--VTYLFDTNEE 122
Query: 172 VIDPHLSSDGTMIAFVRDCELHVLNL--LINEQRQLTHGANGNTVTHGLAEYIAQEEMDR 229
S G +A+VR+ L++ L + T T + + Q E
Sbjct: 123 TASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGI 182
Query: 230 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289
+ G +WS +AF ++D S + I+ + YP AG + V +G+
Sbjct: 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVD---YHPLEAESKPLYYPMAGTPSHHVTVGI 239
Query: 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKT 348
A G ++ E++L ++W NIL +NR+Q + KV +D +T
Sbjct: 240 YHLATGKTVYLQTG------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 293
Query: 349 GQRKVILVEELDS-WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP 407
G+ L E D +V T L + FIW S + G+ HLYL+D G +
Sbjct: 294 GRFVRTLFVETDKHYVEPLHPLTFLPGS----NNQFIWQSRRDGWNHLYLYDTTGRLIRQ 349
Query: 408 ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK 467
+T+G+W V G + ++YF T PLE H YC + LT G
Sbjct: 350 VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG------KTKDLTPESGM 403
Query: 468 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIV 527
H L + +D S P ++ + ++ GS L + P +
Sbjct: 404 HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPD-----TGYAMPEIRTG 458
Query: 528 QIQANDG-TVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQY 583
I A DG T LY L P D ++ Y ++ VYGGP QLV +W ++V Y
Sbjct: 459 TIMAADGQTPLYYKLTMPLHFDPAK----KYPVIVYVYGGPHAQLVTKTWRSSVGGWDIY 514
Query: 584 LRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLY 643
+ KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q IG++
Sbjct: 515 MAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVH 574
Query: 644 GWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVM 703
GWSYGG+++ + DVF+ V+G PV W+ Y Y E+Y P E+P GY+ ++++
Sbjct: 575 GWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQENPEGYDAANLL 634
Query: 704 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIY 763
+KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR++
Sbjct: 635 KRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGP-DRVH 693
Query: 764 MEERIWEFIERTL 776
+ E I + L
Sbjct: 694 LYETITRYFTDHL 706
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 592 bits (1529), Expect = 0.0
Identities = 152/708 (21%), Positives = 277/708 (39%), Gaps = 40/708 (5%)
Query: 94 ELVFSPPDGGLDENNI-SPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYF 152
E ++ G + N+ + + E + L RYE S ++ + +
Sbjct: 29 EFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI---SPDREYALFSYNVEPIY 85
Query: 153 Q----------DLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE 201
Q + P+ L S + + G + F+ + ++ + +
Sbjct: 86 QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQ 145
Query: 202 QRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQ 260
++ + +GL++++ +EE+ +WWS D +A+ ++ S +P +
Sbjct: 146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY 205
Query: 261 GKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVN 320
S + + + YP AG+ N + L V+ G + D E Y+ V
Sbjct: 206 TGSIYPTV--KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD--DPRMREYYITMVK 261
Query: 321 WMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS 380
W + LNR+Q + D TG +E ++W++ + K K+
Sbjct: 262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF- 320
Query: 381 GGFIWASEKTGFRHLYLH-------DINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433
FI A + G Y + + + IT GDW V +I+ +E ++YF T
Sbjct: 321 -FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379
Query: 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRIL 493
D P LY A ++N + L A H+M F+ + P +
Sbjct: 380 EDLPRRRQLYSANTVGNFNRQCLSC-DLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTV 438
Query: 494 LCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPP 553
+ D + L I Q+ + I+ +D L + KP +
Sbjct: 439 H-NTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDYN-LPMQILKPA-TFTDTTH 495
Query: 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 613
Y L+ V G P Q V + + V + S G +V K D RG+ +G K ++
Sbjct: 496 YPLLLVVDGTPGSQSVAEKF--EVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRR 553
Query: 614 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSG 669
G ++ +DQ+ ++K+ + ++G YGGYLS L + F C +
Sbjct: 554 LGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSAL 613
Query: 670 APVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRH 728
+P+T + Y + ++E+Y+GL D YE + V H V + + + L++H DE +HF+H
Sbjct: 614 SPITDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQH 673
Query: 729 TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
TA LI L+ + Y + I+PDE H + ++ I F
Sbjct: 674 TAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECF 721
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 584 bits (1506), Expect = 0.0
Identities = 152/765 (19%), Positives = 276/765 (36%), Gaps = 73/765 (9%)
Query: 41 FSLEEIVQSPLPGYVAPTSIGFS--PDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFS 98
++L + L D + + F+ + +
Sbjct: 5 YTLTDY----LKNTYRLKLYSLRWISDHEYLY-------KQENNILVFNAEYGNSSVFLE 53
Query: 99 PPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPD---------G 149
E G + Y S + I++
Sbjct: 54 ------------------NSTFDEFGHSINDYSI---SPDGQFILLEYNYVKQWRHSYTA 92
Query: 150 IYF-QDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHG 208
Y DL+ K +L + S G +A+V + +++V ++T
Sbjct: 93 SYDIYDLN--KRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWT 150
Query: 209 ANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGS 267
+ + +G+ +++ +EE+ + WWS + F+A+ Q + +E+P S+
Sbjct: 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQY 210
Query: 268 EAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ---CGGTDQNYDEEYLARVNWMHG 324
YP AGA N V+ VV+ + YL V W
Sbjct: 211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ 270
Query: 325 NILTAQVLNRSQT--KLKVLKFDIKTGQRKVILVEEL-----DSWVNLHDCFTPLDKGVT 377
++ Q L R Q + + +D +G+ ++ + WV P
Sbjct: 271 ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH--FTL 328
Query: 378 KYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437
+ + S + G+RH+ I+ IT+G W V I + P
Sbjct: 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMP 388
Query: 438 LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497
+LY +L T + + + + P L S
Sbjct: 389 GGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH-SS 447
Query: 498 QDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKP---DESRYGPPPY 554
+ + L + ++ +Q+ P + + T + + P D+S+ Y
Sbjct: 448 VNDKGLRVLEDNSALDKMLQNVQM-PSKKLDFIILNETKFWYQMILPPHFDKSK----KY 502
Query: 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 614
L+ VY GPC Q + ++ ++ I+V D RG+ +G K +I
Sbjct: 503 PLLLDVYAGPCSQKADTVF--RLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRL 560
Query: 615 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674
G + EDQ+ A K G I ++GWSYGGY++++ L VF+C ++ APV+
Sbjct: 561 GTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSR 620
Query: 675 WDGYDTFYTEKYMGL--PSEDPVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTAR 731
W+ YD+ YTE+YMGL P ++ Y S+VM K + LL+HG D+NVHF+ +A+
Sbjct: 621 WEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQ 680
Query: 732 LINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
+ ALV ++ + + DE H ++ + FI++
Sbjct: 681 ISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCF 725
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 576 bits (1487), Expect = 0.0
Identities = 159/754 (21%), Positives = 297/754 (39%), Gaps = 57/754 (7%)
Query: 41 FSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSP- 99
+L++I L G + + + S D + ++ +T + + S
Sbjct: 4 LTLKDI----LNGTFSYKTFFPNWISGQEYLHQSAD----NNIVLYNIETGQSYTILSNR 55
Query: 100 --PDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSC 157
+SP+ + + ++++ K + Y DLS
Sbjct: 56 TMKSVNASNYGLSPDRQ---------------FVYLESDYSK-LWRYSYTATYYIYDLS- 98
Query: 158 SKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHG 217
E + P+ S G+ +A+V +++ + Q+T N + +G
Sbjct: 99 -NGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNG 157
Query: 218 LAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276
+ +++ +EEM K WWS + KF+A+ + + ++IP + G + YP
Sbjct: 158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRT--INIPYP 215
Query: 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ 336
AGA N VR+ ++ + Y + + W+ + Q L R Q
Sbjct: 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ 275
Query: 337 TKLKVLKFDIKTGQRK-------VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 389
+ D + + + E W TP+ + S+K
Sbjct: 276 NVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY--DAISYYKIFSDK 333
Query: 390 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY- 448
G++H++ IT G W I V + S + P ++Y +
Sbjct: 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGS 393
Query: 449 PDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 508
+ + A + + P L + + L E
Sbjct: 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH-DGRTDQEIKILEE 452
Query: 509 QPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKP---DESRYGPPPYKTLISVYGGPC 565
+K +QL +I +++ D L+ + P D S+ Y LI VYGGPC
Sbjct: 453 NKELENALKNIQLPKEEIKKLEV-DEITLWYKMILPPQFDRSK----KYPLLIQVYGGPC 507
Query: 566 VQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG 625
Q V + V+ + +G+++ +D RGTA +G K ++ G + EDQ+T
Sbjct: 508 SQSVRSVF--AVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITA 565
Query: 626 AEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEK 685
I+ G I ++GWSYGGY+S++ LA +F+C ++ APV+SW+ Y + YTE+
Sbjct: 566 VRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTER 625
Query: 686 YMGLPSED--PVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKP 742
+MGLP++D Y+ S+VM + LL+HG D+NVHF+++A++ ALV A+
Sbjct: 626 FMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVD 685
Query: 743 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
++ + + D+ H ++ + F+++
Sbjct: 686 FQAMWYSDQNHGLSGL-STNHLYTHMTHFLKQCF 718
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 3e-62
Identities = 109/625 (17%), Positives = 200/625 (32%), Gaps = 85/625 (13%)
Query: 170 SPVIDPHLSSDGTMIAFVRDCE----LHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQE 225
DG + V E ++ + E +L
Sbjct: 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG--GETVKLNREPIN-------------- 65
Query: 226 EMDRKTGYWWSLDSKFIAFTQV-DSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284
+ I V +E ++ + + +
Sbjct: 66 ----SVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTG 121
Query: 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF 344
+ A V+ L GG + V+ + G+++ + ++ +
Sbjct: 122 EAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAG-LGFFGGGRVSLFTS 180
Query: 345 DIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404
++ +G +V S+ + +P E L D
Sbjct: 181 NLSSGGLRV-FDSGEGSFSSAS--ISP--------GMKVTAGLETAREARLVTVDPRDGS 229
Query: 405 LGPITEGDWMVEQIVGVNEAS------GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP 458
+ + G++ +G + ++ D +EAP
Sbjct: 230 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-------SAVFIDG-ERVEAP 281
Query: 459 VKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKR 518
+G H V+ + V H SL +PPRI+ L G +L +P R
Sbjct: 282 ------QGNHGRVVLWRGK-LVTSHTSLSTPPRIVS--LPSGEPLLEG-----GLPEDLR 327
Query: 519 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 578
+ +V +++ DG+ + + + P P T++ V+GGP + DS + D
Sbjct: 328 RSIAGSRLVWVESFDGSRVPTYVLESGR---APTPGPTVVLVHGGPFAE---DSD--SWD 379
Query: 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG 638
A L + G V + RG+ G ++ I + + ED A W + GLA
Sbjct: 380 TFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS-- 437
Query: 639 HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPS 691
+ + G+SYGGY++ L P +F+ V+GA V W D + E+ G
Sbjct: 438 ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG--- 494
Query: 692 EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 751
S ++HV ++K L L+H + RL+ L+A K +E I PD
Sbjct: 495 GSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDA 554
Query: 752 RHMPRRHRDRIYMEERIWEFIERTL 776
H D + + F+
Sbjct: 555 GHAINTMEDAVKILLPAVFFLATQR 579
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 1e-55
Identities = 90/534 (16%), Positives = 160/534 (29%), Gaps = 60/534 (11%)
Query: 270 QEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNY----------DEEYLARV 319
E+ G S+V+ L V G + +D + D +
Sbjct: 148 AEEFTGE--GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWL 205
Query: 320 NWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKY 379
W H + T+LK + + + P
Sbjct: 206 AWDHPR------MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-------- 251
Query: 380 SGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439
G I A+++TG+ +L+ D + + A PL
Sbjct: 252 DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF--------AGPLWTPGMRWFAPLA 303
Query: 440 SHLYCAKLYPDWNHTL------EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRIL 493
+ L V + A L + V S + ++
Sbjct: 304 NGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363
Query: 494 LCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPP- 552
G + P I A DG ++ +Y P + P
Sbjct: 364 ELDTVTGRARTIGARHT---DPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPA 420
Query: 553 --PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 610
++ +GGP + +D+ Y S+GI V ++ G+ G + +
Sbjct: 421 DELPPYVVMAHGGPTSR---VPA--VLDLDVAYFTSRGIGVADVNYGGSTGYGRAYRERL 475
Query: 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA 670
+ G +D ED A L ++G A + + G S GG+ +A +L DV+ C
Sbjct: 476 RGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLV-STDVYACGTVLY 534
Query: 671 PVTSWDG--------YDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE 722
PV G +++ Y + +G E P Y + + +++ LL+ G+ D
Sbjct: 535 PVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDP 594
Query: 723 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
R + A+ P+ L F E H RR + E +
Sbjct: 595 VCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKETMVRALEAELSLYAQVF 648
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 2e-42
Identities = 41/253 (16%), Positives = 76/253 (30%), Gaps = 23/253 (9%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 586
++I L G L P ++ V+G Q + +RA+
Sbjct: 9 IEIPV-GQDELSGTLLTPT-------GMPGVLFVHGWGGSQ-------HHSLVRAREAVG 53
Query: 587 KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWS 646
G + D RG ++ + + +D + L I + G S
Sbjct: 54 LGCICMTFDLRGHEGYASMRQSVTRAQ----NLDDIKAAYDQLASLPYVDAHSIAVVGLS 109
Query: 647 YGGYLSAITLARFPDVFQCAVSGAPVTS--WDG-YDTFYTEKYMGLPSEDPVGYEYSSVM 703
YGGYLSA+ P + S A WD + + + + + +
Sbjct: 110 YGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLAL 169
Query: 704 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIY 763
+ KG +LLV D V +A A + + H +
Sbjct: 170 AACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNA-RSLTSRVIAGADHALSVKEHQQE 228
Query: 764 MEERIWEFIERTL 776
+ +++ +
Sbjct: 229 YTRALIDWLTEMV 241
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 9e-27
Identities = 46/266 (17%), Positives = 81/266 (30%), Gaps = 39/266 (14%)
Query: 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG 588
DG L L P + P I ++G S + + L G
Sbjct: 5 YIDCDGIKLNAYLDMPKNN---PEKCPLCIIIHGFTG-----HSEERHIVAVQETLNEIG 56
Query: 589 ILVWKLDNRGTARRGLKFE-ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSY 647
+ + D G + KFE ++ + L ++ K V I + G S
Sbjct: 57 VATLRADMYGHGKSDGKFEDHTLFKW-----LTNILAVVDYAKKLD--FVTDIYMAGHSQ 109
Query: 648 GGYLSAITLARFPDVFQCAVSGAPVTS-----------WDGYDTFYTEKYMGLPSEDPVG 696
GG + A D+ + + +P +D + +
Sbjct: 110 GGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLK 169
Query: 697 YEY------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 750
Y V V K +L+VHG DE V + + K +++ P
Sbjct: 170 GNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQY----KNCKLVTIPG 225
Query: 751 ERHMPRRHRDRIYMEERIWEFIERTL 776
+ H H + + E + EF+ +
Sbjct: 226 DTHCYDHHLELVT--EAVKEFMLEQI 249
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 5e-26
Identities = 47/302 (15%), Positives = 82/302 (27%), Gaps = 63/302 (20%)
Query: 514 PRIKRLQLEPPDI----VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV 569
+K + + G ++ KP + LI +G
Sbjct: 68 IELKESSFQVSFAECYDLYFTGVRGARIHAKYIKPK----TEGKHPALIRFHGYSSNS-- 121
Query: 570 CDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG-------------- 615
W + + G V +D RG + +
Sbjct: 122 -GDWND-----KLNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNM 175
Query: 616 --RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673
R D A ++ +G+ G S GG LS A P V VS P
Sbjct: 176 LFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVR-KVVSEYPFL 234
Query: 674 SWDGYDTFYTEKYMGLPSEDPVGY------------------EYSSVMHHVHKMKGKLLL 715
S Y + ++ Y Y V + ++KG +L+
Sbjct: 235 SD--YKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLM 292
Query: 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH-MPRRHRDRIYMEERIWEFIER 774
G++D+ + + A + +I ++PD H R D +F+
Sbjct: 293 CVGLMDQVC---PPSTVFAAYNNIQSKKDIKVYPDYGHEPMRGFGDLAM------QFMLE 343
Query: 775 TL 776
Sbjct: 344 LY 345
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 45/304 (14%), Positives = 84/304 (27%), Gaps = 55/304 (18%)
Query: 506 LYEQPLTVPRIKRLQLEPPDI----VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVY 561
L + P ++ + + + ++ + G PD P+ ++ +
Sbjct: 35 LAKVQAE-PDLQPVDYPADGVKVYRLTYKSFGNARITGWYAVPD----KEGPHPAIVKYH 89
Query: 562 GGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG------ 615
G D I+ G + + RG R + H G
Sbjct: 90 GYNASY---DGEIH----EMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGI 142
Query: 616 --------RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV 667
R D + E + IG+ G S GG L+ A AV
Sbjct: 143 LDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPK-AAV 201
Query: 668 SGAPVTSW--------DGYDTFYTEKY---MGLPSEDPVGYE---YSSVMHHVHKMKGKL 713
+ P S + G P + + Y +M+ ++K +
Sbjct: 202 ADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPV 261
Query: 714 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH-MPRRHRDRIYMEERIWEFI 772
L+ G+ID+ N L E+ ++ H + F
Sbjct: 262 LMSIGLIDKVTPPSTVFAAYNHL---ETKKELKVYRYFGHEYIPAFQTEKL------AFF 312
Query: 773 ERTL 776
++ L
Sbjct: 313 KQIL 316
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 5e-25
Identities = 43/268 (16%), Positives = 75/268 (27%), Gaps = 44/268 (16%)
Query: 508 EQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ 567
+ L + +R PP + + G V L+ P P I ++G
Sbjct: 118 GRLLCQAQHERH-FLPPGVWRQSVRAGRV-RATLFLPPGPGPFPGI----IDIFGIG--- 168
Query: 568 LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 627
++ RA L G L + I E
Sbjct: 169 ------GGLLEYRASLLAGHGFATLALAYYNFEDLPNNMD--------NISLEYFEEAVC 214
Query: 628 WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 687
++++ K IGL G S G + + +V S + +
Sbjct: 215 YMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISGNTAINYKHSSIP 274
Query: 688 GLPS-------------------EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 728
L VG + M + K +G +LL+ G D N
Sbjct: 275 PLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSEL 334
Query: 729 TARLINALVAARK--PYEILIFPDERHM 754
A+ ++ + A +I+ +P H
Sbjct: 335 YAQTVSERLQAHGKEKPQIICYPGTGHY 362
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 9e-24
Identities = 45/268 (16%), Positives = 75/268 (27%), Gaps = 44/268 (16%)
Query: 508 EQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ 567
+ L R +R L P V+ + + G L+ P E P + ++G
Sbjct: 134 GRLLCQTRHERYFLPPG--VRREPVRVGRVRGTLFLPPEPGPFPGI----VDMFGTG--- 184
Query: 568 LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 627
++ RA L KG V L E + E
Sbjct: 185 ------GGLLEYRASLLAGKGFAVMALAYYNYEDLPKTME--------TLHLEYFEEAMN 230
Query: 628 WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 687
+L+ K +GL G S GG L + + V V + G + E
Sbjct: 231 YLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLP 290
Query: 688 GLPS-------------------EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHF-R 727
+ P+ V + + L + G D N
Sbjct: 291 PVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEF 350
Query: 728 HTARLINALVAARKP-YEILIFPDERHM 754
+ L A + +I+ +P+ H
Sbjct: 351 YANEACKRLQAHGRRKPQIICYPETGHY 378
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 97.1 bits (241), Expect = 9e-22
Identities = 35/281 (12%), Positives = 71/281 (25%), Gaps = 49/281 (17%)
Query: 509 QPLTVPRIKRLQLEPPDIVQIQ---ANDGTVLYGALYKP---DESRYGPPPYKTLISVYG 562
+P T + L D + G + L+ P + R Y ++ ++G
Sbjct: 127 EPFTSKQTDEKHLIIDDFLAFTFKDPETGVEIPYRLFVPKDVNPDR----KYPLVVFLHG 182
Query: 563 GP------CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616
+Q+ + V + +Y V + F
Sbjct: 183 AGERGTDNYLQVAGNRG-AVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFNPE 241
Query: 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676
+ L+ + I + G S GGY + + FP++F A+
Sbjct: 242 KPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS 301
Query: 677 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 736
E+ +P + + H D V ++ L+ L
Sbjct: 302 -----KVERIKDIP----------------------IWVFHAEDDPVVPVENSRVLVKKL 334
Query: 737 VAARKPYEILIFPDERHMPRRHR-----DRIYMEERIWEFI 772
+ Y + E++
Sbjct: 335 AEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWL 375
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 1e-19
Identities = 41/306 (13%), Positives = 75/306 (24%), Gaps = 53/306 (17%)
Query: 506 LYEQPLTVPRIKRLQLEPPDI----VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVY 561
+ PL P +R++ + V G + G L P ++
Sbjct: 47 SEKFPLD-PVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVPKL---EEEKLPCVVQYI 102
Query: 562 GGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC------- 614
G + S G + + +D RG LK +
Sbjct: 103 GYN--------GGRGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYP 154
Query: 615 -----GRIDAEDQ---------LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP 660
G +D + E I + G S GG ++ A
Sbjct: 155 GFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK 214
Query: 661 DVFQCAVSGAPVTSW---------DGYDTFYTEKYMGLPSEDPVGYE---YSSVMHHVHK 708
+ P T ++ + + Y ++ +
Sbjct: 215 KAK-ALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAAR 273
Query: 709 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 768
K L G++D N P EI I+P H + + +
Sbjct: 274 AKIPALFSVGLMDNICPPSTVFAAYNYY---AGPKEIRIYPYNNHEGGGSFQAVEQVKFL 330
Query: 769 WEFIER 774
+ E+
Sbjct: 331 KKLFEK 336
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 4e-19
Identities = 41/254 (16%), Positives = 77/254 (30%), Gaps = 34/254 (13%)
Query: 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVW 592
DG + + P+ GP P+ +I + GG +S + +G+
Sbjct: 135 DGIPMPVYVRIPE----GPGPHPAVIML-GGL------ESTKEESFQMENLVLDRGMATA 183
Query: 593 KLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGA-EWLIKQGLAKVGHIGLYGWSYGGYL 651
D G D E + + L K + IG+ G S GG
Sbjct: 184 TFDGPGQGEMFEYKRI-------AGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNY 236
Query: 652 SAITLARFPDVFQCAVSGAPVTSWDGYDTF---------YTEKYMGLPSEDPVGYEYSSV 702
+ + A P +S + D +D Y K L +
Sbjct: 237 ALKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALET 295
Query: 703 MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 762
+ ++ ++HG+ DE V ++ + A +++ D H R
Sbjct: 296 RDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAEHL--NLVVEKDGDHCCHNLGIRP 352
Query: 763 YMEERIWEFIERTL 776
+ +++ L
Sbjct: 353 R--LEMADWLYDVL 364
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 2e-17
Identities = 33/230 (14%), Positives = 58/230 (25%), Gaps = 19/230 (8%)
Query: 551 PPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 610
P L++++G + + +G L+ D R +S
Sbjct: 21 EAPKALLLALHGLQGSKEHILAL-------LPGYAERGFLLLAFDAPRHGEREGPPPSSK 73
Query: 611 KHNCGRIDAEDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666
L E + + L G S G +++ + LA
Sbjct: 74 SPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVL 133
Query: 667 VSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHF 726
G+ + + Y+ LL +HG D V
Sbjct: 134 AF-----IGSGFPMKLPQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPL 188
Query: 727 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
+ + AL + F +E H M F+E L
Sbjct: 189 ARMEKTLEALRPHYPEGRLARFVEEGA---GHTLTPLMARVGLAFLEHWL 235
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 6e-16
Identities = 39/263 (14%), Positives = 79/263 (30%), Gaps = 41/263 (15%)
Query: 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV 591
DG L G +P Y I +G + + + A LR + I
Sbjct: 29 RDGLQLVGTREEPFG-----EIYDMAIIFHG-----FTANRNTSLLREIANSLRDENIAS 78
Query: 592 WKLDNRGTARRGLKF-EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGY 650
+ D G KF ++ + ED ++ V +I L G + GG
Sbjct: 79 VRFDFNGHGDSDGKFENMTVLNE-----IEDANAILNYVKTDP--HVRNIYLVGHAQGGV 131
Query: 651 LSAITLARFPDVFQCAVSGAPVTS-------WDGYDTFYTEKYMGLPSED---PVGYEY- 699
++++ +PD+ + V AP + + Y ++ +G Y
Sbjct: 132 VASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYL 191
Query: 700 -----SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH- 753
+ + + L+HG D V + + + + + H
Sbjct: 192 RIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKK----YDQIYQNSTLHLIEGADHC 247
Query: 754 MPRRHRDRIYMEERIWEFIERTL 776
++ +F++
Sbjct: 248 FSDSYQKNAV--NLTTDFLQNNN 268
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 76.5 bits (187), Expect = 5e-15
Identities = 34/299 (11%), Positives = 74/299 (24%), Gaps = 51/299 (17%)
Query: 502 LVLPLYEQPLTVPRIKRLQLEPPDI--VQIQANDGTVLYGALYKPDESRYGPPPYKTLIS 559
+ P ++ + +K + E + + +V + KP+ + G P I
Sbjct: 63 MKFPEIKRQPSPVCVKTEKKEGYILEKWEFYPFPKSVSTFLVLKPEHLK-GAVPGVLCIP 121
Query: 560 VYGGP---------CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK----- 605
G + + + N A + +G + +DN
Sbjct: 122 GSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDK 181
Query: 606 -------FEASIKHNCGR----IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI 654
+ G + + W+ Q + I + G+S G +
Sbjct: 182 GWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEP-MM 240
Query: 655 TLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK-- 712
L V + M P ++ +S+ H +
Sbjct: 241 VLGVLDKDIYAFVYNDFLCQTQ-----ERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFN 295
Query: 713 ------------LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 759
++ G +D + + A + E +P R
Sbjct: 296 FPDVVASLAPRPIIFTEGGLDRDFRL---VQSAYAASGKPENAEFHHYPKFADKAVRKD 351
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 2e-13
Identities = 39/278 (14%), Positives = 76/278 (27%), Gaps = 53/278 (19%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR-----A 581
++ N+G L+ P E+ P T++ G M A
Sbjct: 10 HVLRVNNGQELHVWETPPKEN--VPFKNNTILIASG------------FARRMDHFAGLA 55
Query: 582 QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG 641
+YL + G V++ D+ SI T WL +G +IG
Sbjct: 56 EYLSTNGFHVFRYDSLHHVGLS---SGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIG 109
Query: 642 LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSED-------- 693
L S + A + ++ + V D + Y+ LP ++
Sbjct: 110 LIAASLSARV-AYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFE 168
Query: 694 --PVGYEY-------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 738
+G E S + V L+ D+ V ++ +
Sbjct: 169 GHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHI-- 226
Query: 739 ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
++ H + + + + +
Sbjct: 227 RTGHCKLYSLLGSSH--DLGENLVVLRNFYQSVTKAAI 262
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 28/221 (12%)
Query: 575 NTVDMR--AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632
+ DM A+ L+ G V+ G + + + + +
Sbjct: 34 SPNDMNFMARALQRSGYGVYVPLFSGHGTV------EPLDILTKGNPDIWWAESSAAVAH 87
Query: 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM----- 687
AK + ++G S GG + L P + V +P+ + KY
Sbjct: 88 MTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNR 147
Query: 688 --GLPSEDPVGYEY------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733
G E Y ++V ++ +K + DE V R +L
Sbjct: 148 LAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLR 207
Query: 734 NALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774
+AL+ A + + D +H+ + +EE + F+++
Sbjct: 208 DALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQQ 247
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 7e-12
Identities = 40/308 (12%), Positives = 84/308 (27%), Gaps = 56/308 (18%)
Query: 502 LVLPLYEQPLTVPRIKRLQLEPPDI--VQIQANDGTVLYGALYKPDESRYGPPPYKTLIS 559
+ P + IKR Q E + + V + PD P ++
Sbjct: 68 MKFPQIKNSPAPVCIKREQREGYRLEKWEFYPLPKCVSTFLVLIPDN---INKPVPAILC 124
Query: 560 V--YGGPCVQLV---------CDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608
+ GG L D + + +A +G + +DN
Sbjct: 125 IPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERY 184
Query: 609 SIKHN----------------CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLS 652
++ N + + W+ Q + I + G+S G
Sbjct: 185 TLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPM 244
Query: 653 AITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 712
+ + V + + M +P ++ +S+ H +
Sbjct: 245 MVLGTLDTSI-YAFVYNDFLCQTQ-----ERAEVMTMPDKNGRRPFPNSIRHLIPDFWKN 298
Query: 713 --------------LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 758
++L G +D ++ R A+V +I + + P
Sbjct: 299 FNFPDIVAALAPRPIILTEGGLDRDLDL---VRKAYAIVGTPDNVKIYHYK-KFSDPDTR 354
Query: 759 RDRIYMEE 766
++ Y+ E
Sbjct: 355 KNVEYLPE 362
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 1e-11
Identities = 40/250 (16%), Positives = 69/250 (27%), Gaps = 42/250 (16%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 586
V + L G L P+ G ++ +G + V A+ L+
Sbjct: 15 VSVSV-GEVKLKGNLVIPN----GATG--IVLFAHGSGSSRY--SPRNRYV---AEVLQQ 62
Query: 587 KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWS 646
G+ +D + + A + +WL + +G +G S
Sbjct: 63 AGLATLLIDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGAS 122
Query: 647 YGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 706
GG + + A P+ Q VS G P D V
Sbjct: 123 TGGGAALVAAAERPETVQAVVS-----------------RGGRP--DLAPSALPHVKAPT 163
Query: 707 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEE 766
L+ G D V + AL + ++I P H+ + +
Sbjct: 164 L-------LIVGGYDLPVIAMNED----ALEQLQTSKRLVIIPRASHLFEEPGALTAVAQ 212
Query: 767 RIWEFIERTL 776
E+ L
Sbjct: 213 LASEWFMHYL 222
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 8e-11
Identities = 40/304 (13%), Positives = 80/304 (26%), Gaps = 72/304 (23%)
Query: 517 KRLQLEPPDI--VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI 574
+ + +++ L G + TLI V GG + D +
Sbjct: 126 LAVDNSKIPLKSIEVPFEGEL-LPGYAIISE-----DKAQDTLIVVGGGDTSR--EDLF- 176
Query: 575 NTVDMRAQYLRSKGILVWKLDNRGTA---RRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631
M V +D G +GL FE + ++
Sbjct: 177 ---YMLGYSGWEHDYNVLMVDLPGQGKNPNQGLHFEVDARA------------AISAILD 221
Query: 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 691
A I + G+S GGY +A + + + S +D + F L +
Sbjct: 222 WYQAPTEKIAIAGFSGGGYFTAQAVEKDKRIKAWIASTPI---YDVAEVFRISFSTALKA 278
Query: 692 EDPVGYEYS------------------------------------SVMHHVHKMKGKLLL 715
+ S + + +K+ L
Sbjct: 279 PKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLF 338
Query: 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH---RDRIYMEERIWEFI 772
+ G +++ R + L + + F E H + M +++E++
Sbjct: 339 LVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGAD-AHCQVNNFRLMHYQVFEWL 397
Query: 773 ERTL 776
Sbjct: 398 NHIF 401
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 8e-11
Identities = 36/223 (16%), Positives = 61/223 (27%), Gaps = 36/223 (16%)
Query: 578 DMR--AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635
MR A+ G V +G G +E R D + E
Sbjct: 55 SMRPLAEAYAKAGYTVCLPRLKG---HGTHYED-----MERTTFHDWVASVEEGYGWLKQ 106
Query: 636 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMG------- 688
+ I + G S GG L+ PD+ A V +
Sbjct: 107 RCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIG 166
Query: 689 ----LPSEDPVGYEY-------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTAR 731
P + YE + + ++ L+ D V +
Sbjct: 167 SDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADI 226
Query: 732 LINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774
+ + + K EI+ + H+ D+ + ER EF +
Sbjct: 227 IFQGISSTEK--EIVRLRNSYHVATLDYDQPMIIERSLEFFAK 267
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 31/283 (10%), Positives = 65/283 (22%), Gaps = 51/283 (18%)
Query: 517 KRLQLEPPDIVQIQ-ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN 575
+ + I Q++ + + L+ P+ +I G DS
Sbjct: 159 EAAKKSKYIIKQLEIPFEKGKITAHLHLT----NTDKPHPVVIVS-AGL------DSLQT 207
Query: 576 -TVDMRAQYLRSKGILVWKLDNRGTAR-RGLKFEASIKHNCGRIDAEDQLTGA-EWLIKQ 632
+ +L I + +D D L
Sbjct: 208 DMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL---------TEDYSRLHQAVLNELFSI 258
Query: 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY------ 686
+GL G+ +GG + + V ++
Sbjct: 259 PYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLD 318
Query: 687 -----MGLPSEDPVGY-----EYS---SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733
+G D +S K K +L + D + +++
Sbjct: 319 VLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSD-NQMV 377
Query: 734 NALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
K +I + + D +++E L
Sbjct: 378 AFFSTYGKAKKISSKTITQGYE-QSLDLAI------KWLEDEL 413
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 45/258 (17%), Positives = 80/258 (31%), Gaps = 47/258 (18%)
Query: 519 LQLEPPDIVQIQANDGTV-LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 577
L + +++ + L G L++PD + +I V GG S+ +
Sbjct: 15 LYFQGMQVIKQKLTATCAQLTGYLHQPDTNA-HQTNLPAIIIVPGG--------SY-THI 64
Query: 578 DMR-----AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632
+ A G + L+ + A + +D A L++Q
Sbjct: 65 PVAQAESLAMAFAGHGYQAFYLEYTLLTDQQPLGLAPV------LDLGR----AVNLLRQ 114
Query: 633 GLAKVG----HIGLYGWSYGGYLSAITLARFPDVF-------------QCAVSGAPVTSW 675
A+ I G+S GG++ A+ + V G PV S
Sbjct: 115 HAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVIS- 173
Query: 676 DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINA 735
+ + + P + HV+ + D V +T A
Sbjct: 174 PLLGFPKDDATLATWTPTP---NELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATA 230
Query: 736 LVAARKPYEILIFPDERH 753
L A+ PYE+ +F H
Sbjct: 231 LATAKIPYELHVFKHGPH 248
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 36/245 (14%), Positives = 73/245 (29%), Gaps = 38/245 (15%)
Query: 522 EPPDIVQIQANDGTVLYGALYKPDESRYGP-PPYKTLISVYGGPCVQLVCDSWINTVDMR 580
+ + ND + Y+ R + +I GG + + + R
Sbjct: 12 KLMNKSTFSLNDTAWVD--FYQLQNPRQNENYTFPAIIICPGG--------GYQH-ISQR 60
Query: 581 -----AQYLRSKGILVWKLDNR--GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633
A ++G V L+ +++ + + LI Q
Sbjct: 61 ESDPLALAFLAQGYQVLLLNYTVMNKGTNYNFLSQNLE------EVQA----VFSLIHQN 110
Query: 634 LAKVG----HIGLYGWSYGGYLSAIT-LARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMG 688
+ + L G S GG+L+A + + + PVTS+ +
Sbjct: 111 HKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWP----SDLS 166
Query: 689 LPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 748
+ + ++ V + H DE V ++ + + L + P+E F
Sbjct: 167 HFNFEIENISEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFF 226
Query: 749 PDERH 753
H
Sbjct: 227 ESGPH 231
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 Length = 615 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 8e-09
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 13/166 (7%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISV--YG--GPCVQLVCDSWINTVDMRAQ 582
V I DG L+ + P G +++ Y G +L + +
Sbjct: 28 VMIPMRDGVKLHTVIVLPK----GAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDD 83
Query: 583 YLRSKGILVWKLDNRGT-----ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKV 637
G + D RG + + A D +WL+K
Sbjct: 84 VFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN 143
Query: 638 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 683
G +G+ G SY G+ + L + AV +P+ D ++
Sbjct: 144 GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDWFN 189
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 9e-09
Identities = 21/191 (10%), Positives = 49/191 (25%), Gaps = 32/191 (16%)
Query: 581 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG-- 638
A + + G+ L+ + + ++ I +
Sbjct: 58 ATRMMAAGMHTVVLNYQLIVGDQSVYPWAL------QQLGA----TIDWITTQASAHHVD 107
Query: 639 --HIGLYGWSYGGYLSAITLARFPD--------------VFQCAVSGAPVTSWDGYDTFY 682
I L G+S GG++ A + G PV
Sbjct: 108 CQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTT 167
Query: 683 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 742
+ + ++ + V + DE+V ++ + + A++ +
Sbjct: 168 SAARNQITTD----ARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVA 223
Query: 743 YEILIFPDERH 753
+F H
Sbjct: 224 TAYHLFGSGIH 234
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 34/184 (18%)
Query: 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG--------- 669
D ++ L+K+ + +I + G S G LA D +
Sbjct: 97 LYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQ 154
Query: 670 --APVTSWDG-YD--------TFYTEKYMGLPSEDPVGYEYSS------VMHHVHKMKGK 712
V DG Y Y + YE V + +
Sbjct: 155 IVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSID 214
Query: 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772
+ LVH DE + R T LI+ L + +++ + H + +Y ++ ++I
Sbjct: 215 MHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLH------NDVYKNGKVAKYI 268
Query: 773 ERTL 776
+
Sbjct: 269 FDNI 272
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Length = 247 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 47/232 (20%)
Query: 575 NTVDMR--AQYLRSKGILVWKLDNRG-----TARRGLKFEASIKHNCGRIDAEDQLTGAE 627
N+ D+R ++L SKG +G + + D + E
Sbjct: 28 NSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQ------DVMNGY---E 78
Query: 628 WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT---- 683
+L +G K+ + G S GG ++ L + AP+ +
Sbjct: 79 FLKNKGYEKIA---VAGLSLGGVF-SLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEY 134
Query: 684 --------EKYMGLPSEDPVGYEY-------------SSVMHHVHKMKGKLLLVHGMIDE 722
K ++ ++ + V H+ + +V DE
Sbjct: 135 AREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDE 194
Query: 723 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774
++ + N + + K +I + H+ +++ + E I+ F+E
Sbjct: 195 MINPDSANIIYNEIESPVK--QIKWYEQSGHVITLDQEKDQLHEDIYAFLES 244
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A Length = 652 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 9e-08
Identities = 33/174 (18%), Positives = 54/174 (31%), Gaps = 30/174 (17%)
Query: 527 VQIQANDGTVLYGALYKPDESR----------YGPPPYKTLI-SVYGGPCVQLVCDSWIN 575
V + DG LY + P +R Y + + V D
Sbjct: 40 VMVPMRDGVKLYTVIVIPKNARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFV 99
Query: 576 -------TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW 628
D+R +Y S+G V G E + DA D + +W
Sbjct: 100 EGGYIRVFQDIRGKY-GSQGDYVMTRPPHGPLNPTKTDETT--------DAWDTV---DW 147
Query: 629 LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682
L+ G +G+ G SY G+ + L + A +P+ D ++
Sbjct: 148 LVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDDWF 201
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* Length = 560 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 38/275 (13%), Positives = 80/275 (29%), Gaps = 49/275 (17%)
Query: 510 PLTVPRIKRLQLEPPDI-----VQIQANDGTVLYGALYKPDE----------SRYG--PP 552
+ + +Q ++ ++ DG LY +++P++ YG
Sbjct: 22 GINHIVVDSVQYGNQEMIMEKDGTVEMRDGEKLYINIFRPNKDGKFPVVMSADTYGKDNK 81
Query: 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612
P T + + S+ + +V K+ RG+ +
Sbjct: 82 PKITNMGALWPTLGTIPTSSFTPEESPDPGFWVPNDYVVVKVALRGSDKSKGVLS----- 136
Query: 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672
+ +AED EW Q + G+IG G SY + P + + +
Sbjct: 137 PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGL 195
Query: 673 TSW------------DGYDTFYTEKYMGLPSEDPV--------------GYEYSSVMHHV 706
G+ F+T+ +++P + +
Sbjct: 196 NDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQVPL 255
Query: 707 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741
++K LL + +H R + + K
Sbjct: 256 SQIKTPLLTCASWSTQGLHNRGSFEGFKQAASEEK 290
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} Length = 241 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 19/128 (14%)
Query: 626 AEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEK 685
A W + G + + G+ +GG ++ + A P + + AV+ +Y
Sbjct: 104 ASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQL-KAAVA------------WY--- 146
Query: 686 YMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 745
G + + + +L ++G D ++ + AL AA EI
Sbjct: 147 --GKLVGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEI 204
Query: 746 LIFPDERH 753
+++P+ H
Sbjct: 205 VVYPEADH 212
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 5e-07
Identities = 31/244 (12%), Positives = 63/244 (25%), Gaps = 47/244 (19%)
Query: 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV 591
DG + G + P E ++ +GG + + ++ A+ L +GI
Sbjct: 38 VDGRTVPGVYWSPAEG--SSDR--LVLLGHGGTTHKK-----VEYIEQVAKLLVGRGISA 88
Query: 592 WKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK-------------QGLAKVG 638
+D G R + +DA ++ +
Sbjct: 89 MAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAEEGPR 148
Query: 639 HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 698
G +G S G + A + + A+ G +
Sbjct: 149 PTGWWGLSMGTMMGLPVTASDKRI-KVALLGLMGVEGVNGEDL----------------- 190
Query: 699 YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 758
+ ++ + + DE V + L L +K L +H
Sbjct: 191 ----VRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGTKQKT---LHVNPGKHSAVPT 243
Query: 759 RDRI 762
+
Sbjct: 244 WEMF 247
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 6e-07
Identities = 91/656 (13%), Positives = 177/656 (26%), Gaps = 198/656 (30%)
Query: 139 KKIIMVPLPDGIYFQDLSCSKPE--LK--LSSSSCSPVI-DPH-----------LSSDGT 182
K I+ V + + C + K LS +I L S
Sbjct: 19 KDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 183 MIA--FVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSK 240
+ FV + L++ + + T YI E+ DR ++ +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR-----MYI--EQRDR----LYNDNQV 125
Query: 241 FIAFTQVDSSEIPRFRIMHQ----------------------GKSSVGSEAQEDHAYPFA 278
F + + R + + GK+ V + +
Sbjct: 126 FAKYN------VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY----- 174
Query: 279 GASNVKVRLGVVSAAGGPVSWMDL-QCGGTD------QN----YDEEYLARVNWMHGNIL 327
V + W++L C + Q D + +R + L
Sbjct: 175 ---------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 328 TAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWV----NLHDC---FTPLDKGVTKY 379
++ Q +L+ L K + ++++ + ++ NL C T K VT +
Sbjct: 226 R---IHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDF 280
Query: 380 SGG-----FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434
+ + L D + +++ N
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQD-LPREVLTTN------------ 326
Query: 435 DGPLESHLYCAKLYPDWNHTLE-----APVKLTNGKGKHVAVLDHN-MRN-FVD---FHD 484
P + A+ D T + KLT + VL+ R F F
Sbjct: 327 --PRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 485 SLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALY-- 542
S P LL + + + + V ++ + L V+ Q + T+ ++Y
Sbjct: 384 SAHIPTI-LLSLIWFD---VIKSDVMVVVNKLHKYSL-----VEKQPKESTISIPSIYLE 434
Query: 543 ---KPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 599
K + +++++ Y P DS QY S + L N
Sbjct: 435 LKVKLENEYA---LHRSIVDHYNIPKTF---DSDDLIPPYLDQYFYSH--IGHHLKNIEH 486
Query: 600 ARRGLKF----------EASIKHNCGRIDAEDQLTGAEWLIKQGLAKV--------GHIG 641
R F E I+H W + +I
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRH-----------DSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 642 LYGWSYGGYLSAI-----------TLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY 686
Y ++AI +++ D+ + A+ + + E +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM-------AEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 68/479 (14%), Positives = 138/479 (28%), Gaps = 166/479 (34%)
Query: 345 DIKTGQRKV----ILVEELDSWVNLHDCFTPLD--KGVTKYSGGFIWASEKTGFRHLYL- 397
D +TG+ + IL D++V+ DC D K + K H+ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS----------KEEIDHIIMS 57
Query: 398 -HDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 456
++GT + ++ E Q + L ++ +
Sbjct: 58 KDAVSGT--------LRLFWTLLSKQEEMVQKFVEEVLR-------------INYKFLMS 96
Query: 457 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 516
R +++ D L + ++ V R+
Sbjct: 97 PIKTEQRQPSM-------MTRMYIEQRDRLYNDNQVF---------------AKYNVSRL 134
Query: 517 KR--------LQLEPPDIVQIQANDG---TVLYGALYKPDESRYGPPPYKTLISVYGGPC 565
+ L+L P V I G T + + +K ++
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFK----IF---- 185
Query: 566 VQLVCDSWIN-----TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAE 620
W+N + + + L+ L++++D T+R ++IK I AE
Sbjct: 186 -------WLNLKNCNSPETVLEMLQK---LLYQIDPNWTSR--SDHSSNIKLRIHSIQAE 233
Query: 621 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC-------------AV 667
+ + L + ++ + A F + C +
Sbjct: 234 LRRLLKSKPYENCLLVLLNV----QN------AKAWNAF-N-LSCKILLTTRFKQVTDFL 281
Query: 668 SGA---PVTSWDGYDTFYTE-------KYMGLPSED-PVGYEYSSVMHHVHKMKGKLLLV 716
S A ++ T + KY+ +D P ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------------REVLTTNPRR 329
Query: 717 HGMIDENVH--------FRH--TARL-------INALVAA--RKPYEIL-IFPDERHMP 755
+I E++ ++H +L +N L A RK ++ L +FP H+P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 7e-07
Identities = 32/214 (14%), Positives = 55/214 (25%), Gaps = 40/214 (18%)
Query: 541 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN----TVDMRAQYLRSKGILVWKLDN 596
L+ P+ P + V+GG W+ + A SKG V
Sbjct: 55 LFLPEG-----TPVGLFVFVHGG--------YWMAFDKSSWSHLAVGALSKGWAVAMPSY 101
Query: 597 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITL 656
+ + K+ G I L G S GG+L A L
Sbjct: 102 ELCPEV--RISEIT---------QQISQAVTAAAKE---IDGPIVLAGHSAGGHLVARML 147
Query: 657 AR------FPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK 710
+ V +P++ + + D S + ++
Sbjct: 148 DPEVLPEAVGARIRNVVPISPLSDLRPLLRTSMNEKFKM---DADAAIAESPVEMQNRYD 204
Query: 711 GKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744
K+ + G + L+ A A
Sbjct: 205 AKVTVWVGGAERPAFLDQAIWLVEAWDADHVIAF 238
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* Length = 318 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 638 GHIGLYGWSYGGYLSAITLARFPDVFQCAV---SGAPV---TSWDGYDTFYT-EKYMGLP 690
+ + G + GGY++A + DVF +G P + Y + P
Sbjct: 11 NSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTP 70
Query: 691 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733
+ + + + + + + K+ + G D V +L
Sbjct: 71 TANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLK 113
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 6e-06
Identities = 31/232 (13%), Positives = 58/232 (25%), Gaps = 41/232 (17%)
Query: 541 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN----TVDMRAQYLRSKGILVWKLDN 596
++ +++ P + V+GG W L +G V +D
Sbjct: 72 VFYSEKTTNQAP---LFVFVHGG--------YWQEMDMSMSCSIVGPLVRRGYRVAVMDY 120
Query: 597 RGTARRGLKFEASIKHNCGRIDAEDQLTGA-EWLIKQGLA-KVGHIGLYGWSYGGYLSAI 654
L + +++ Q T W+ KV + G G +L A
Sbjct: 121 N------LCPQVTLE------QLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQ 168
Query: 655 TLAR-------FPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVH 707
L R + + V + + + E S M +
Sbjct: 169 ILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESVNPKNILGLNERNIESVSPMLWEY 228
Query: 708 KMKG-----KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754
K+ +V D + + L +F H
Sbjct: 229 TDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHF 280
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 39/218 (17%), Positives = 62/218 (28%), Gaps = 32/218 (14%)
Query: 581 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRI--DAEDQLTGAEWLIKQGLAKVG 638
S G+ + D G G F G I E+ L + + VG
Sbjct: 59 DDLAASLGVGAIRFDYSGHGASGGAFR------DGTISRWLEEALAVLDHFKPEKAILVG 112
Query: 639 H--IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY-----TEKYMGLPS 691
G L A ++ AP + D + E
Sbjct: 113 SSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYF 172
Query: 692 EDPVGYEY---------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 736
E+ Y + VM + + ++ GM D +V ++H +L+ L
Sbjct: 173 EEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHL 232
Query: 737 VAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774
A + + D H R +D M I IE
Sbjct: 233 PADDV--VLTLVRDGDHRLSRPQDIDRMRNAIRAMIEP 268
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 15/156 (9%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 586
V G L LY P G ++ V+ + + AQ +
Sbjct: 71 VTFANRYGITLAADLYLPKN--RGGDRLPAIVIGGPFGAVK------EQSSGLYAQTMAE 122
Query: 587 KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWS 646
+G + D T G + I+ ED +++ IG+ G
Sbjct: 123 RGFVTLAFDPSYTGESGGQPR---NVASPDINTEDFSAAVDFISLLPEVNRERIGVIGIC 179
Query: 647 YGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682
G ++ +A V AV T +D
Sbjct: 180 GWGGMALNAVAVDKRV--KAV--VTSTMYDMTRVMS 211
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 28/206 (13%), Positives = 47/206 (22%), Gaps = 77/206 (37%)
Query: 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELV------FSP---PDGGLDENN 108
G SPD L + S ++ L+ + PDG
Sbjct: 88 NDHGISPDGALYAISDKVEFGKSA-IYLLPSTGGTPRLMTKNLPSYWHGWSPDG------ 140
Query: 109 ISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDG---IYFQDLSCSKPELKLS 165
K + D IY D+ +L+
Sbjct: 141 ------------------------------KSFTYCGIRDQVFDIYSMDIDSGVET-RLT 169
Query: 166 SSSCSPVID--PHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLA 219
+ P S DG I F ++ + + + ++T A G+ H
Sbjct: 170 HG---EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPH--- 223
Query: 220 EYIAQEEMDRKTGYWWSLDSKFIAFT 245
S + F
Sbjct: 224 ---------------PSPSGDKVVFV 234
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} Length = 275 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 16/120 (13%)
Query: 638 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 697
G L+G GG + L + FQ +P W+ E+ + + +
Sbjct: 152 GKQTLFGHXLGGLFALHILFTNLNAFQNYFISSPSIWWNNKSVLEKEENLIIELNNA--- 208
Query: 698 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP---YEILIFPDERHM 754
K + + L G ++ L L+ ++ E H
Sbjct: 209 ----------KFETGVFLTVGSLEREHMVVGANELSERLLQVNHDKLKFKFYEAEGENHA 258
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 Length = 763 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 7e-04
Identities = 27/213 (12%), Positives = 54/213 (25%), Gaps = 64/213 (30%)
Query: 615 GRIDAEDQLTGAEWLIKQGLAKV--------------GHIGLYGWSYGGYLSAITLARFP 660
+WL + A G + + G SY G ++
Sbjct: 303 DYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGV 362
Query: 661 DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS----------------------------- 691
+ + ++ A ++SW Y+ + + P
Sbjct: 363 EGLELILAEAGISSW--YNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNA 420
Query: 692 ------------EDPVGYEYS------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733
D +Y+ + + + K+K +L+VHG+ D NV
Sbjct: 421 EYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFW 480
Query: 734 NALVAARKPYEILIFPDERHMPRRHRDRIYMEE 766
AL + + + E
Sbjct: 481 KAL-PEGHAKHAFLHRGAHIYMNSWQSIDFSET 512
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 776 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.95 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.93 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.93 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.91 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.91 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.9 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.9 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.9 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.9 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.9 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.89 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.89 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.89 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.89 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.89 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.89 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.89 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.89 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.88 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.88 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.88 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.88 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.87 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.87 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.87 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.87 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.87 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.86 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.86 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.86 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.86 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.86 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.86 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.86 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.86 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.86 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.86 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.86 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.86 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.85 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.85 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.85 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.85 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.85 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.85 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.85 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.85 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.85 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.85 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.85 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.85 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.85 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.85 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.84 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.84 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.84 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.84 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.84 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.84 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.84 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.84 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.83 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.83 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.83 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.83 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.83 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.83 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.83 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.83 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.83 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.82 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.82 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.82 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.82 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.82 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.82 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.82 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.82 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.81 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.81 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.81 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.81 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.81 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.81 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.81 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.81 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.81 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.8 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.8 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.8 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.8 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.8 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.8 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.8 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.8 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.8 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.79 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.79 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.79 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.79 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.79 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.79 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.79 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.79 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.79 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.79 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.79 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.79 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.79 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.78 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.78 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.78 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.78 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.78 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.78 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.78 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.78 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.78 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.78 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.78 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.78 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.77 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.77 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.77 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.77 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.77 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.77 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.77 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.77 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.77 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.77 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.77 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.76 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.76 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.76 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.76 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.76 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.76 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.76 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.76 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.76 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.76 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.76 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.75 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.75 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.75 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.75 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.75 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.75 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.75 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.75 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.75 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.75 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.75 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.75 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.75 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.74 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.74 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.74 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.74 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.74 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.74 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.74 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.74 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.74 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.74 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.74 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.74 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.74 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.74 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.73 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.73 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.73 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.73 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.73 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.73 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.73 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.73 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.73 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.73 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.72 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.72 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.72 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.72 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.72 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.72 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.71 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.71 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.71 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.71 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.71 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.71 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.71 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.7 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.7 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.7 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.7 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.7 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.7 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.7 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.7 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.69 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.69 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.69 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.69 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.69 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.69 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.68 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.68 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.68 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.68 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.68 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.68 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.68 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.67 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.67 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.67 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.67 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.67 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.66 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.66 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.66 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.66 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.66 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.66 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.66 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.65 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.65 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.65 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.65 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.65 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.65 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.64 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.64 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.64 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.64 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.64 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.64 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.64 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.64 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.63 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.63 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.63 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.63 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.63 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.62 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.62 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.62 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.62 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.61 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.41 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.61 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.61 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.61 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.6 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.6 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.6 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.59 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.59 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.59 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.59 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.59 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.59 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.58 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.58 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.57 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.57 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.57 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.57 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.56 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.56 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.56 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.55 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.55 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.55 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.55 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.54 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.54 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.54 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.54 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.53 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.53 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.53 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.52 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.52 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.52 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.52 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.52 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.52 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.51 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.51 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.5 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.49 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.49 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.49 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.48 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.48 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.48 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.48 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.48 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.48 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.48 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.47 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.47 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.47 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.46 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.46 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.45 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.44 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.43 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.43 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.43 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.42 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.42 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.42 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.41 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.41 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.4 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.4 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.39 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.39 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.38 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.38 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.38 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.38 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.37 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.37 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.36 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.36 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.36 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.35 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.35 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.35 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.35 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.34 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.34 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.34 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.33 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.3 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.29 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.29 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.29 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.28 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 99.28 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.26 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.26 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.24 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.24 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.24 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.24 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.23 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.23 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.23 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.23 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.2 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.2 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.19 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 99.18 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.15 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.15 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.14 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.12 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.1 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.08 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.06 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.05 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.05 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 99.03 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 99.02 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.01 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 99.01 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.99 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.99 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.99 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.98 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 98.98 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.98 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.96 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 98.95 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.95 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.93 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.91 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.9 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.89 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.88 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.88 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.87 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.87 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.86 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.86 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.86 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.86 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.83 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.83 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.81 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.81 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.8 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.8 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.79 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.79 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.79 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.78 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.78 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.76 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.76 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.75 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.73 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.73 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.69 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.68 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.67 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.67 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.66 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.65 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.65 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.65 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.65 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.63 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.63 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.61 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.6 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.6 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.6 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.59 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.59 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.59 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.58 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.56 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.56 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.55 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.55 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 98.54 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.53 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.52 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.5 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.49 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.47 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.42 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.41 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.4 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.39 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.39 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.35 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.29 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.24 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.21 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.16 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.13 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.1 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 98.05 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.04 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.02 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.02 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.96 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.96 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.96 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.95 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.94 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.89 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.89 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.86 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.85 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.83 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.81 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.79 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-76 Score=686.84 Aligned_cols=684 Identities=22% Similarity=0.351 Sum_probs=566.1
Q ss_pred ccccChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHH
Q 004067 38 CVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRR 117 (776)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 117 (776)
++.+|+++++..... ....+++|||||++|+.. + .+|++||+++|+.++++...... .
T Consensus 2 ~~~~tl~~~~~~~~~--~~~~~~~w~~dg~~~~~~---~----~~i~~~~~~~~~~~~~~~~~~~~----~--------- 59 (740)
T 4a5s_A 2 RKTYTLTDYLKNTYR--LKLYSLRWISDHEYLYKQ---E----NNILVFNAEYGNSSVFLENSTFD----E--------- 59 (740)
T ss_dssp CEECCHHHHHHTCSC--CCCCCEEECSSSEEEEEE---T----TEEEEEETTTCCEEEEECTTTTT----T---------
T ss_pred CCceeHHHHhcCccc--ccccccEECCCCcEEEEc---C----CcEEEEECCCCceEEEEechhhh----h---------
Confidence 456899999985321 235789999999877652 2 47999999999988776532200 0
Q ss_pred HHHHHhcCCeeeEEEeecCCCceEEEEeCC----------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEE
Q 004067 118 ERLRERGLGVTRYEWVKTSSKKKIIMVPLP----------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFV 187 (776)
Q Consensus 118 ~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~----------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~ 187 (776)
......++.||| ||++|+|..+ +++|+||+.+++.+ +++.... .+..++|||||++|||+
T Consensus 60 -----~~~~~~~~~~Sp---dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~-~~~~~~~SPdG~~la~~ 129 (740)
T 4a5s_A 60 -----FGHSINDYSISP---DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPN-NTQWVTWSPVGHKLAYV 129 (740)
T ss_dssp -----CCSCCCEEEECT---TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCT-TEEEEEECSSTTCEEEE
T ss_pred -----hcccccceEECC---CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCC-cceeeEECCCCCEEEEE
Confidence 001123589999 9999999854 68999999999988 7876554 48899999999999999
Q ss_pred ECCcEEEEecCCCceeEEeeCCCCCceecCCcccceeccc-CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCC
Q 004067 188 RDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVG 266 (776)
Q Consensus 188 ~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (776)
++++||++++++|+.++||.++....+..|.++|+++||+ ++..+++|||||++|+|.+.+++.+..+.+..+......
T Consensus 130 ~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~ 209 (740)
T 4a5s_A 130 WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQ 209 (740)
T ss_dssp ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCS
T ss_pred ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCC
Confidence 9999999999999999999877766788999999999995 888899999999999999999998999988877654323
Q ss_pred CCCcceecCCCCCCCCCeEEEEEEEcCC---C---ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEE
Q 004067 267 SEAQEDHAYPFAGASNVKVRLGVVSAAG---G---PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLK 340 (776)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~---~---~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 340 (776)
.+....++|+.+|..+....|++||+++ + +...+..+. .+..+..++..++|||||+.+++..++.++...
T Consensus 210 ~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~ 286 (740)
T 4a5s_A 210 YPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA---SMLIGDHYLCDVTWATQERISLQWLRRIQNYSV 286 (740)
T ss_dssp SCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH---HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE
T ss_pred CCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc---cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE
Confidence 3566788999999999999999999999 8 566663310 001366789999999999988888899888889
Q ss_pred EEEEECCCCc-------eEEEEEeccCceeec----ccccccCCCCccccCCeEE-EEeccCCceEEEEEeCCCceeecc
Q 004067 341 VLKFDIKTGQ-------RKVILVEELDSWVNL----HDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408 (776)
Q Consensus 341 l~~~d~~~g~-------~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~s~~~g~~~l~~~~~~g~~~~~l 408 (776)
|++||+++|+ .+.+.++....|+.. .+.|+| ++..++ +.++++|+.+||++++++++.++|
T Consensus 287 i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-------DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l 359 (740)
T 4a5s_A 287 MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-------DGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359 (740)
T ss_dssp EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-------TSSEEEEEEECTTSCEEEEEEETTCSSCEES
T ss_pred EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-------CCCEEEEEEEcCCCceEEEEEECCCCceEec
Confidence 9999999987 445555555667642 233333 445566 788899999999999999999999
Q ss_pred ccCCeEEEEEEeecCCCcEEEEEEcc--CCCceeeEEEEEeCCCCCCccccceeecCC-----CCeEEEEEcCCcCEEEE
Q 004067 409 TEGDWMVEQIVGVNEASGQVYFTGTL--DGPLESHLYCAKLYPDWNHTLEAPVKLTNG-----KGKHVAVLDHNMRNFVD 481 (776)
Q Consensus 409 t~~~~~~~~~~~~s~dg~~i~~~~~~--~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-----~~~~~~~~spdg~~l~~ 481 (776)
|.+.+.+..+.. +||+.|||.++. +++.+.+||++++ +|. ...++|++. .+...++|||||+++++
T Consensus 360 T~g~~~v~~~~~--~d~~~i~f~~~~~~~~~~~~~ly~v~~--~g~---~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~ 432 (740)
T 4a5s_A 360 TKGTWEVIGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQL--IDY---TKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (740)
T ss_dssp CCSSSCEEEEEE--ECSSEEEEEESCGGGCTTCBEEEEEET--TEE---EEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred ccCCEEEEEEEE--EeCCEEEEEEecCCCCCceeEEEEEEC--CCC---CcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence 999988887654 458999999987 6677899999998 443 123478753 46788999999999999
Q ss_pred EeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEc
Q 004067 482 FHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVY 561 (776)
Q Consensus 482 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~H 561 (776)
.++++. ||.+++++..+++..+.+..+......+....++..+.+.+ ..+|..++++++.|++.. ..+++|+||++|
T Consensus 433 ~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~P~~~~-~~~~~P~vv~~H 509 (740)
T 4a5s_A 433 RCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-ILNETKFWYQMILPPHFD-KSKKYPLLLDVY 509 (740)
T ss_dssp EECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EETTEEEEEEEEECTTCC-TTSCEEEEEECC
T ss_pred EeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-ccCCeEEEEEEEeCCCCC-CCCCccEEEEEC
Confidence 999877 89999999988876666666555556778888888888888 669999999999998752 336899999999
Q ss_pred CCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcE
Q 004067 562 GGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHI 640 (776)
Q Consensus 562 G~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i 640 (776)
|+++.+.+...|...+ ...++ ++||+|+++|+||+|+++..+.......++..+++|+.++++++.++..+|.++|
T Consensus 510 Gg~~~~~~~~~~~~~~---~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 586 (740)
T 4a5s_A 510 AGPCSQKADTVFRLNW---ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRI 586 (740)
T ss_dssp CCTTCCCCCCCCCCSH---HHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CCCcccccccccCcCH---HHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccE
Confidence 9988876555664333 44555 6999999999999999999888888788888889999999999998888899999
Q ss_pred EEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCC--CCCccchhcCChhhhhccCCC-cEEEEe
Q 004067 641 GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP--SEDPVGYEYSSVMHHVHKMKG-KLLLVH 717 (776)
Q Consensus 641 ~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~-P~lii~ 717 (776)
+|+||||||++|+.+++++|++|+++++.+|+.+|..+...+.+++++.| ......|...++...+.+++. |+|++|
T Consensus 587 ~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~ 666 (740)
T 4a5s_A 587 AIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIH 666 (740)
T ss_dssp EEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHHHHHHHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEE
T ss_pred EEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhhHHHHHHcCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEE
Confidence 99999999999999999999999999999999999988888888888877 666777888899999999986 999999
Q ss_pred cCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 718 GMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 718 G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
|+.|..+|+.++.+++++|++++++++++++|+++|.+...+...++++.+.+||+++|
T Consensus 667 G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 725 (740)
T 4a5s_A 667 GTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCF 725 (740)
T ss_dssp ETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998667778899999999999876
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-70 Score=643.74 Aligned_cols=705 Identities=33% Similarity=0.591 Sum_probs=553.4
Q ss_pred ccccChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeC-CCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHH
Q 004067 38 CVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLS-PDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLR 116 (776)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~ 116 (776)
.+.+++++++..+.+.+..+.+++|||||++|+|.+. ..+....+||+||+++++.++++.......+...++.+++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (741)
T 2ecf_A 20 AEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKAR 99 (741)
T ss_dssp --CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------
T ss_pred cccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhh
Confidence 4569999999766666677799999999999999987 332233589999999999988886432111111233333222
Q ss_pred HHHHHHhc-CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCC---ccceecCCCCCCCccCceeCCCCCEEEEEECCcE
Q 004067 117 RERLRERG-LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCS---KPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCEL 192 (776)
Q Consensus 117 ~~~~~~~~-~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~---~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l 192 (776)
.++.+..+ .++..+.||| ||++|++...++|++||+.++ +.+ .++.... .+..+.|||||++|||+++++|
T Consensus 100 ~~~~~~~~~~~v~~~~~Sp---Dg~~l~~~~~~~i~~~d~~~~~~~~~~-~l~~~~~-~~~~~~~SPDG~~la~~~~~~i 174 (741)
T 2ecf_A 100 RERQRIAAMTGIVDYQWSP---DAQRLLFPLGGELYLYDLKQEGKAAVR-QLTHGEG-FATDAKLSPKGGFVSFIRGRNL 174 (741)
T ss_dssp -------CCEESCCCEECT---TSSEEEEEETTEEEEEESSSCSTTSCC-BCCCSSS-CEEEEEECTTSSEEEEEETTEE
T ss_pred hhhhhhccccCcceeEECC---CCCEEEEEeCCcEEEEECCCCCcceEE-EcccCCc-ccccccCCCCCCEEEEEeCCcE
Confidence 22222111 2367899999 999999998899999999999 776 6766543 4788999999999999999999
Q ss_pred EEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 193 HVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 193 ~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
|++++++|+.++++..+. ..+..+..+|+++++..+...++|||||++|+|.+.+.+....+....... .......
T Consensus 175 ~~~d~~~g~~~~~~~~~~-~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p---~~~~~~~ 250 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADGS-TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYA---DRTDVIE 250 (741)
T ss_dssp EEEETTTTEEEECCCCCC-SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECS---SCEEEEE
T ss_pred EEEecCCCCEEEeccCCc-cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCC---CcccceE
Confidence 999999999988876553 346678889999999988899999999999999987776555444211111 1123566
Q ss_pred ecCCCCCCCCCeEEEEEEEcCC-CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEe-ecCceEEEEEEECCCCc
Q 004067 273 HAYPFAGASNVKVRLGVVSAAG-GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN-RSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~-~~~~~~~l~~~d~~~g~ 350 (776)
++|+..|..+....|++||+++ ++...+... ..+...+..++| |||+.|++... +......|++||+++|+
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLG------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCC------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCC------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 7889999988899999999999 988777432 245678899999 99997777654 55667899999999999
Q ss_pred eEEEEEeccCceee--cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEE
Q 004067 351 RKVILVEELDSWVN--LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQV 428 (776)
Q Consensus 351 ~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i 428 (776)
.+.+.......|.. ....|+| +++++++++.+|..+||.++++++ .++|+.+.+.+..+..||+||+.|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~sp--------dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l 394 (741)
T 2ecf_A 324 QRVLAHETSPTWVPLHNSLRFLD--------DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLA 394 (741)
T ss_dssp EEEEEEEECSSCCCCCSCCEECT--------TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEE
T ss_pred eEEEEEcCCCCcCCcCCceEECC--------CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEE
Confidence 98887766555532 1223333 234888888889999999999888 899999888787776799999999
Q ss_pred EEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeecc
Q 004067 429 YFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 508 (776)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 508 (776)
++.+..+++...+||.+++ +|. .+++|+...++..++|||||++|++.+++...|+++++++.. +...+.++.
T Consensus 395 ~~~~~~~~~~~~~l~~~~~--~g~----~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~-~~~~~~l~~ 467 (741)
T 2ecf_A 395 YFRAGIESARESQIYAVPL--QGG----QPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRAN-GEKIATLVE 467 (741)
T ss_dssp EEEECSSCTTCBEEEEEET--TCC----CCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT-SCEEECSSC
T ss_pred EEEEeCCCCceEEEEEEEc--CCC----CeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC-CCeEEEecc
Confidence 9999877655689999997 454 578888866788899999999999999999999999999984 444566665
Q ss_pred CCC-chh-hhhcc--CCCCceEEEEEcCCC-cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccch-hhhH
Q 004067 509 QPL-TVP-RIKRL--QLEPPDIVQIQANDG-TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD-MRAQ 582 (776)
Q Consensus 509 ~~~-~~~-~~~~~--~~~~~~~~~~~~~dg-~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~-~~~~ 582 (776)
+.. ... .+.+. .+...+.+.+++.+| ..++++++.|++.. ..+++|+||++||+++.......|..... .+++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~P~~~~-~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~~~~~ 546 (741)
T 2ecf_A 468 NDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFD-PAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQ 546 (741)
T ss_dssp CCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEEEEEECCSSCC-TTSCEEEEEECCCSTTCCSCSSCCCCSHHHHHHH
T ss_pred CcccccccchhhhhccCCCcEEEEEEcCCCCEEEEEEEEeCCCCC-CCCCcCEEEEEcCCCCcccccccccccchhHHHH
Confidence 433 222 45556 788899999999999 99999999998642 22578999999998877543344532211 3578
Q ss_pred HHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCc
Q 004067 583 YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV 662 (776)
Q Consensus 583 ~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~ 662 (776)
.|+++||+|+++|+||+|.++..+.......++..+++|+.++++++.++..++.++++|+||||||++++.++.++|++
T Consensus 547 ~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~ 626 (741)
T 2ecf_A 547 YLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDS 626 (741)
T ss_dssp HHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTT
T ss_pred HHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCc
Confidence 89999999999999999999888776666666677789999999999998878889999999999999999999999999
Q ss_pred eEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCC
Q 004067 663 FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 742 (776)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 742 (776)
|+++++.+|+.++..+...+.+.+++.+......|...++...+.++++|+|++||+.|..+++.++.++++++...+++
T Consensus 627 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 706 (741)
T 2ecf_A 627 YACGVAGAPVTDWGLYDSHYTERYMDLPARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQP 706 (741)
T ss_dssp CSEEEEESCCCCGGGSBHHHHHHHHCCTGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCC
T ss_pred eEEEEEcCCCcchhhhccccchhhcCCcccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCCHHHHHHHHHHHHHCCCc
Confidence 99999999999987776666666666666656667777888889999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 743 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 743 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++++++++++|.+... ...++++.+.+||+++|
T Consensus 707 ~~~~~~~~~~H~~~~~-~~~~~~~~i~~fl~~~l 739 (741)
T 2ecf_A 707 FELMTYPGAKHGLSGA-DALHRYRVAEAFLGRCL 739 (741)
T ss_dssp CEEEEETTCCSSCCHH-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCCC-chhHHHHHHHHHHHHhc
Confidence 9999999999988433 23789999999999875
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-69 Score=629.01 Aligned_cols=685 Identities=22% Similarity=0.353 Sum_probs=538.9
Q ss_pred ccccChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHH
Q 004067 38 CVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRR 117 (776)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 117 (776)
.+.+|+++++..+. ...+.+++|||||++|+ .+ .+ .+|++||+++++.+++......
T Consensus 2 ~~~~~~~~~~~~~~--~~~~~~~~~spdg~~~~-~~-~d----g~i~~~d~~~g~~~~~~~~~~~--------------- 58 (723)
T 1xfd_A 2 KKKVTVEDLFSEDF--KIHDPEAKWISDTEFIY-RE-QK----GTVRLWNVETNTSTVLIEGKKI--------------- 58 (723)
T ss_dssp CCCCCHHHHTCTTT--CCCCCCCCBSSSSCBCC-CC-SS----SCEEEBCGGGCCCEEEECTTTT---------------
T ss_pred CccccHHHHhCCCC--cccccccEEcCCCcEEE-Ee-CC----CCEEEEECCCCcEEEEeccccc---------------
Confidence 34589999997642 23468999999999664 32 22 4799999999998877753220
Q ss_pred HHHHHhcCCeeeEEEeecCCCceEEEEeCC----------CcEEEEeCCCCccceecCCCCC--CCccCceeCCCCCEEE
Q 004067 118 ERLRERGLGVTRYEWVKTSSKKKIIMVPLP----------DGIYFQDLSCSKPELKLSSSSC--SPVIDPHLSSDGTMIA 185 (776)
Q Consensus 118 ~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~----------~~l~~~d~~~~~~~~~l~~~~~--~~~~~~~~SpDg~~la 185 (776)
...++..+.||| ||++|++..+ ++|++||+++++.+ .++.... ..+..++|||||++||
T Consensus 59 -----~~~~v~~~~~Sp---Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la 129 (723)
T 1xfd_A 59 -----ESLRAIRYEISP---DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLI 129 (723)
T ss_dssp -----TTTTCSEEEECT---TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred -----cccccceEEECC---CCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEE
Confidence 001478899999 9999999843 78999999999886 6664332 1267899999999999
Q ss_pred EEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceeccc-CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCC
Q 004067 186 FVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSS 264 (776)
Q Consensus 186 ~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (776)
|+++++||++++++|+.++++..+....+..|.++|+++||+ ..+..++|||||+.|+|.+.+......+.+......
T Consensus 130 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~- 208 (723)
T 1xfd_A 130 FIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS- 208 (723)
T ss_dssp EEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS-
T ss_pred EEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc-
Confidence 999999999999999999998765555567788899988875 566789999999999999988777777766544332
Q ss_pred CCCCCcceecCCCCCCCCCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEE
Q 004067 265 VGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 343 (776)
.......+.|+.+|..+....|++||+++++. ..+... ..+......+..++|||||+++++..++......|++
T Consensus 209 -~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 209 -IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP---DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp -SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC---CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred -CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC---ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence 22346778899889888888999999999884 554221 0011235678899999999988888887777889999
Q ss_pred EECCCCceEEEEEeccCceee---cccccccCCCCccccCCeEEEE-eccCC----ceEEEEEe-CCCce---eeccccC
Q 004067 344 FDIKTGQRKVILVEELDSWVN---LHDCFTPLDKGVTKYSGGFIWA-SEKTG----FRHLYLHD-INGTC---LGPITEG 411 (776)
Q Consensus 344 ~d~~~g~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-s~~~g----~~~l~~~~-~~g~~---~~~lt~~ 411 (776)
||+++|+.+.+.......|.. ....|+| ++..+++. ++.++ ..+||+|+ .++++ .++|+.+
T Consensus 285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp-------dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~ 357 (723)
T 1xfd_A 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSK-------DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG 357 (723)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECT-------TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred EeCCCCcceEEEEeccCCEEeccCCCceEcC-------CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC
Confidence 999999988776654444532 1223333 34557776 66677 77999999 67887 8899977
Q ss_pred CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC----CCCeEEEEEcCCcCEEEEEeeCCC
Q 004067 412 DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN----GKGKHVAVLDHNMRNFVDFHDSLD 487 (776)
Q Consensus 412 ~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~ 487 (776)
.+.+...+.|||||+.|+|.+..+.+...+||.+++ +|. ...++|+. ...+..++|||||++|++.+++++
T Consensus 358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~--~~~---~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 432 (723)
T 1xfd_A 358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT--VGN---FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG 432 (723)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS--STT---CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC--CCC---CCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence 776766667999999999998876445689999997 442 13556664 334678999999999999999998
Q ss_pred CCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcc
Q 004067 488 SPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ 567 (776)
Q Consensus 488 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~ 567 (776)
.|+.++ ++..++..+..+..+......+.+..+...+.+.+++.+| +++++++.|++.. ..+++|+||++||+++..
T Consensus 433 ~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~P~~~~-~~~~~p~vv~~HG~~~~~ 509 (723)
T 1xfd_A 433 VPMVTV-HNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILKPATFT-DTTHYPLLLVVDGTPGSQ 509 (723)
T ss_dssp SCCEEE-EETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEBCSSCC-SSSCEEEEEECCCCTTCC
T ss_pred CCeEEE-EECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEeCCCCC-CCCccCEEEEEcCCCCcc
Confidence 887665 4766666555554433233467778888899999999899 9999999998742 236889999999988765
Q ss_pred cccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeech
Q 004067 568 LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSY 647 (776)
Q Consensus 568 ~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~ 647 (776)
.....|.. ...+..++++||+|+++|+||+|+++..+.......++...++|+.++++++.++..+|.++|+|+||||
T Consensus 510 ~~~~~~~~--~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~ 587 (723)
T 1xfd_A 510 SVAEKFEV--SWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDY 587 (723)
T ss_dssp CCCCCCCC--SHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETH
T ss_pred ccCccccc--cHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECH
Confidence 43444432 2345677789999999999999999887766655666667799999999999988778889999999999
Q ss_pred HHHHHHHHHhhC----CCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCC-CcEEEEecCCCC
Q 004067 648 GGYLSAITLARF----PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDE 722 (776)
Q Consensus 648 GG~~a~~~a~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~ 722 (776)
||++++.++.++ |++|+++++.+|+.++..+...+.+.+++.+......+...++...+.+++ +|+|++||++|.
T Consensus 588 GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~ 667 (723)
T 1xfd_A 588 GGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADE 667 (723)
T ss_dssp HHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCS
T ss_pred HHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhhhhccHhhcCCccCChhHHHhcChhhHHhhcCCCCEEEEEeCCCC
Confidence 999999999999 999999999999999887766666666676666566677778888899999 799999999999
Q ss_pred ccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 723 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 723 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
.+|+.++.++++++++.+.+++++++|+++|.+...+...++++.+.+||+++|
T Consensus 668 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 721 (723)
T 1xfd_A 668 KIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECF 721 (723)
T ss_dssp SSCHHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTT
T ss_pred CcCHhHHHHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998666778899999999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-67 Score=614.06 Aligned_cols=676 Identities=22% Similarity=0.377 Sum_probs=532.3
Q ss_pred ccChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHH
Q 004067 40 LFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRER 119 (776)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~ 119 (776)
.+|+++++..+.. ....+++|||||+ +++.+. + .+|++||+++++.++++....
T Consensus 3 ~~~~~~~~~~~~~--~~~~~~~~s~dg~-~~~~~~-d----~~i~~~~~~~g~~~~~~~~~~------------------ 56 (719)
T 1z68_A 3 ALTLKDILNGTFS--YKTFFPNWISGQE-YLHQSA-D----NNIVLYNIETGQSYTILSNRT------------------ 56 (719)
T ss_dssp CCCHHHHHHTTTC--CCCCCCEESSSSE-EEEECT-T----SCEEEEESSSCCEEEEECHHH------------------
T ss_pred cccHHHHhcCccc--CCCCccEECCCCe-EEEEcC-C----CCEEEEEcCCCcEEEEEcccc------------------
Confidence 4789999886522 2345889999995 444432 2 479999999999988885211
Q ss_pred HHHhcCCeeeEEEeecCCCceEEEEeCC----------CcEEEEeCCCCcc---ceecCCCCCCCccCceeCCCCCEEEE
Q 004067 120 LRERGLGVTRYEWVKTSSKKKIIMVPLP----------DGIYFQDLSCSKP---ELKLSSSSCSPVIDPHLSSDGTMIAF 186 (776)
Q Consensus 120 ~~~~~~~~~~~~~sp~~~dg~~l~~~~~----------~~l~~~d~~~~~~---~~~l~~~~~~~~~~~~~SpDg~~la~ 186 (776)
....++..+.||| ||++|+|..+ +.|++||+++++. + .++. .+..++|||||++|||
T Consensus 57 --~~~~~~~~~~~Sp---Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~----~~~~~~~SPDG~~la~ 126 (719)
T 1z68_A 57 --MKSVNASNYGLSP---DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPR----PIQYLCWSPVGSKLAY 126 (719)
T ss_dssp --HHTTTCSEEEECT---TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCS----SBCCEEECSSTTCEEE
T ss_pred --ccccceeeEEECC---CCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCc----ccccceECCCCCEEEE
Confidence 0012478899999 9999999843 7899999999988 5 5542 3778999999999999
Q ss_pred EECCcEEEEecCCCceeEEeeCCCCCceecCCcccceeccc-CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCC
Q 004067 187 VRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSV 265 (776)
Q Consensus 187 ~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 265 (776)
+++++||++++.+|+.++++..+....+..|.++|+++||+ .....++|||||++|+|.+.+.+....+.+..+...
T Consensus 127 ~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~-- 204 (719)
T 1z68_A 127 VYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE-- 204 (719)
T ss_dssp EETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS--
T ss_pred EECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC--
Confidence 99999999999999999998776655677899999998886 666789999999999999988777777777666543
Q ss_pred CCCCcceecCCCCCCCCCeEEEEEEEcCCCceE---EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEE
Q 004067 266 GSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS---WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVL 342 (776)
Q Consensus 266 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 342 (776)
..+....++|+..|..+....|++||+++++.. .+..+ ..+..+...+..++|||||++++...++......|+
T Consensus 205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~ 281 (719)
T 1z68_A 205 QYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP---AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLS 281 (719)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC---HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEE
T ss_pred CCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC---ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEE
Confidence 235677889999999999999999999998752 33210 001245678899999999987777667777778999
Q ss_pred EEE----CCCCceEEEEE---eccCceeec----ccccccCCCCccccCCeEEE-EeccCCceEEEEEeCCCceeecccc
Q 004067 343 KFD----IKTGQRKVILV---EELDSWVNL----HDCFTPLDKGVTKYSGGFIW-ASEKTGFRHLYLHDINGTCLGPITE 410 (776)
Q Consensus 343 ~~d----~~~g~~~~l~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~s~~~g~~~l~~~~~~g~~~~~lt~ 410 (776)
++| +++|+.+.++. .....|... ...|+| ++..+++ .++.+|..+||++++++++.++|+.
T Consensus 282 ~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-------dg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~ 354 (719)
T 1z68_A 282 ICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY-------DAISYYKIFSDKDGYKHIHYIKDTVENAIQITS 354 (719)
T ss_dssp EEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT-------TSSCEEEEEECTTSCEEEEEESSCSTTCEECSC
T ss_pred EEcccCCCCCCceEEEEecccccCCceEccccCCccEECC-------CCCeEEEEEEccCCceEEEEEECCCCceEeccc
Confidence 999 88888776653 333444431 223333 3445666 4667899999999999998999998
Q ss_pred CCeEEEEEEeecCCCcEEEEEEcc--CCCceeeEEEEEeCCCCCCccccceeecC-----CCCeEEEEEcCCcCEEEEEe
Q 004067 411 GDWMVEQIVGVNEASGQVYFTGTL--DGPLESHLYCAKLYPDWNHTLEAPVKLTN-----GKGKHVAVLDHNMRNFVDFH 483 (776)
Q Consensus 411 ~~~~~~~~~~~s~dg~~i~~~~~~--~~~~~~~l~~~~~~~~g~~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~ 483 (776)
+.+.+..+..+ ||+.|+|.+.. +.+...+||.++++ +|. ...++|+. ..++..++|||||+++++.+
T Consensus 355 ~~~~v~~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~~~~-~g~---~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 355 GKWEAINIFRV--TQDSLFYSSNEFEEYPGRRNIYRISIG-SYP---PSKKCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp SSSCEEEEEEE--CSSEEEEEESCGGGCTTCBEEEEEECS-SSS---CCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred CceEEEEEEEE--eCCEEEEEEecCCCCCceEEEEEEeCC-CCC---CCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 88777776644 89999999976 33345899999983 221 13466664 23567889999999999998
Q ss_pred eCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCC
Q 004067 484 DSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGG 563 (776)
Q Consensus 484 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~ 563 (776)
++++.| .+++++..+++..+.+..++.....++...++..+.+++++.+ .+++++++.|++.. ..+++|+||++||+
T Consensus 429 s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~P~~~~-~~~~~p~vl~~hG~ 505 (719)
T 1z68_A 429 YGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDE-ITLWYKMILPPQFD-RSKKYPLLIQVYGG 505 (719)
T ss_dssp CCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EEEEEEEEECTTCC-SSSCEEEEEEECCC
T ss_pred CCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecCC-eEEEEEEEeCCCCC-CCCCccEEEEECCC
Confidence 887765 7899998888765555544333346777788888999999877 89999999998742 23678999999999
Q ss_pred CCcccccccccccchhhhHHH-HhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEE
Q 004067 564 PCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGL 642 (776)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~l-~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l 642 (776)
++.......|... ++..+ +++||+|+++|+||+|.++..+.......++...++|+.++++++.++..+|.++++|
T Consensus 506 ~~~~~~~~~~~~~---~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l 582 (719)
T 1z68_A 506 PCSQSVRSVFAVN---WISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAI 582 (719)
T ss_dssp TTBCCCCCCCCCC---HHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCcCcccccchhh---HHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEE
Confidence 8775444444322 24445 4799999999999999999887776666666677899999999999987788999999
Q ss_pred EeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCC--CCCccchhcCChhhhhccCCC-cEEEEecC
Q 004067 643 YGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP--SEDPVGYEYSSVMHHVHKMKG-KLLLVHGM 719 (776)
Q Consensus 643 ~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~-P~lii~G~ 719 (776)
+||||||++++.++.++|++|+++++.+|+.++..+...+.+.+++.+ ......|...++...+.+++. |+|++||+
T Consensus 583 ~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~ 662 (719)
T 1z68_A 583 WGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGT 662 (719)
T ss_dssp EEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBHHHHHHHHCCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEET
T ss_pred EEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhccccchhhcCCcccccchhhhhhCCHhHHHhcCCCCcEEEEEeC
Confidence 999999999999999999999999999999998877666666666665 334456777788888999987 89999999
Q ss_pred CCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 720 IDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 720 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+|.++++.++.+++++|++.+++++++++|+++|.+ ..+...++++.+.+||+++|
T Consensus 663 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~l 718 (719)
T 1z68_A 663 ADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQCF 718 (719)
T ss_dssp TCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998 55668899999999999875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=589.71 Aligned_cols=667 Identities=27% Similarity=0.464 Sum_probs=522.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+..++|+ |+.++|.+. + .| +||+++|+. +.+..+... ...++.++.. .+....++..+.|||
T Consensus 28 ~~~~~w~--g~~~~~~~~-~-----~i-~~d~~tg~~~~~~l~~~~~~---~~~l~~~~~~----~~~~~~~v~~~~~sp 91 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEG-D-----DL-VFNKANGKSAQTTRFSAADL---NALMPEGCKF----QTTDAFPSFRTLDAG 91 (706)
T ss_dssp CTTCEEE--TTEEEEEET-T-----EE-EEEC-------CEEEEHHHH---HTTC---------------CCCEEEEETT
T ss_pred CCCCcCc--CCeEEEEeC-C-----cE-EEECCCCcEeeEEeechhHh---hhhccchhcc----ccccccCceeEEECC
Confidence 3778999 777777654 2 28 999999988 777753210 0122222222 111225688999999
Q ss_pred cCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCC-----CceeEEeeCC
Q 004067 135 TSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLI-----NEQRQLTHGA 209 (776)
Q Consensus 135 ~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~-----g~~~~lt~~~ 209 (776)
| +++++..++.|++||+.+++.+ .++.... .+..++|||||++|+|+.+++||++++.+ |+.++++..+
T Consensus 92 ---d-~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 92 ---R-GLVVLFTQGGLVGFDMLARKVT-YLFDTNE-ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp ---T-TEEEEEETTEEEEEETTTTEEE-EEECCTT-CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred ---C-CeEEEEECCEEEEEECCCCceE-EccCCcc-cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCC
Confidence 9 8888888899999999999887 6665443 47889999999999999999999999999 9888887654
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
.. .+..|.+ ++++|......++|||||++|+|.+.+++....+.+...... .......+|+..|..+....|++
T Consensus 166 ~~-~~~~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~---~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 166 TE-TLVYGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPL---EAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp BT-TEEESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSS---SCEEEEECCCBTTSCCCEEEEEE
T ss_pred CC-CeEcccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCC---CCceEEeeCCCCCCCCCeeEEEE
Confidence 32 3555655 778888888999999999999999988777776666554433 24566788999998888999999
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE-eecCceEEEEEEECCCC-ceEEEEEeccCceeec--
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL-NRSQTKLKVLKFDIKTG-QRKVILVEELDSWVNL-- 365 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~-~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~-- 365 (776)
||+++++...+... ..+...+..++|||||+.|++.. ++......|++||+++| ..+.+..+....|...
T Consensus 240 ~d~~~~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 240 YHLATGKTVYLQTG------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EETTTTEEEECCCC------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred EECCCCceEeeccC------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence 99999988776432 23556789999999999777654 44556678999999999 6777765554445321
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
...|+| +.+++++++++++|..+||.++.+++..++|+.+.+.+...+.||+||+.|++.+..+++...+||.+
T Consensus 314 ~~~~sp------~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 314 PLTFLP------GSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCEECT------TCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred Cceeec------CCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 112222 01345788888889999999999898899999988877775679999999999998876556799999
Q ss_pred EeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCce
Q 004067 446 KLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525 (776)
Q Consensus 446 ~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 525 (776)
++. +. ..++|+...++..++|||||++|++.+++...|++|++++..+++ .+.+.... .+....+...+
T Consensus 388 d~~--~~----~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~~----~~~~~~~~~~~ 456 (706)
T 2z3z_A 388 DIK--GG----KTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAKN----PDTGYAMPEIR 456 (706)
T ss_dssp ETT--CC----CCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC----------CCCCEE
T ss_pred EcC--CC----CceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeeccccc----hhhhcCCCCcE
Confidence 983 33 567788777788899999999999999999999999999998877 45454321 35666788899
Q ss_pred EEEEEcCCC-cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch
Q 004067 526 IVQIQANDG-TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 526 ~~~~~~~dg-~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~ 604 (776)
.+.+++.+| ..++++++.|++.. ..+++|+||++||+++.......|......+++.|+++||+|+++|+||+|.++.
T Consensus 457 ~~~~~~~~g~~~~~~~~~~P~~~~-~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG~g~s~~ 535 (706)
T 2z3z_A 457 TGTIMAADGQTPLYYKLTMPLHFD-PAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGA 535 (706)
T ss_dssp EEEEECTTSSSEEEEEEECCTTCC-TTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECCTTCSSSCH
T ss_pred EEEEEcCCCCEEEEEEEEeCCCCC-CCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEecCCCcccch
Confidence 999999899 89999999998742 2357899999999887765445564432235788999999999999999999998
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccc
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE 684 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 684 (776)
.+.......++...++|+.++++++.++..+|.++++|+||||||++++.++.++|++|+++++.+|+.+|..+...+.+
T Consensus 536 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~ 615 (706)
T 2z3z_A 536 AFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGE 615 (706)
T ss_dssp HHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGSBHHHHH
T ss_pred hHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchHHHHhhhhh
Confidence 87766666666677899999999998888888899999999999999999999999999999999999999877777777
Q ss_pred cccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHH
Q 004067 685 KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 764 (776)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~ 764 (776)
.+++.+......|...++...+.++++|+|++||+.|.++|+.++.++++++...+++++++++|+++|.+... ...++
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~~~~-~~~~~ 694 (706)
T 2z3z_A 616 RYFDAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGP-DRVHL 694 (706)
T ss_dssp HHHCCTTTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCSSCCTT-HHHHH
T ss_pred hhcCCcccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcc-cHHHH
Confidence 77777777777788888888999999999999999999999999999999999989999999999999998544 78899
Q ss_pred HHHHHHHHHHhC
Q 004067 765 EERIWEFIERTL 776 (776)
Q Consensus 765 ~~~~~~fl~~~l 776 (776)
++.+.+||+++|
T Consensus 695 ~~~i~~fl~~~l 706 (706)
T 2z3z_A 695 YETITRYFTDHL 706 (706)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-51 Score=472.00 Aligned_cols=570 Identities=16% Similarity=0.159 Sum_probs=422.0
Q ss_pred cCCeeeEEEeecCCCceEEEEeC---CC--cEEEEeCCCCccceecCCCCCCCcc---------CceeC--CCCCE-EEE
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVPL---PD--GIYFQDLSCSKPELKLSSSSCSPVI---------DPHLS--SDGTM-IAF 186 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~~---~~--~l~~~d~~~~~~~~~l~~~~~~~~~---------~~~~S--pDg~~-la~ 186 (776)
...+..+.|++ |+..++... ++ .||.+ ..+++.+ +++..... +. .+.|| |||++ |+|
T Consensus 23 ~~~~~~~~~s~---~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~l~~~~~~-~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 23 SGRPACVGAVG---DEVWWVAPRPAEAGRATLVRR-RADGAEE-SALPAPWN-VRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp CSCCEEEEEET---TEEEEEEEETTTTTEEEEEEE-CTTSCEE-ESSCTTCC-BCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred CCccceeEEcC---CeEEEEecCcccCCcEEEEEE-CCCCCcc-eeCCCCcc-ccccccccCCccceeeeecCCCeEEEE
Confidence 45678888988 643333331 23 35555 5566666 77765432 33 45565 99999 999
Q ss_pred EEC--CcEEEEecC--C-CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecC
Q 004067 187 VRD--CELHVLNLL--I-NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQG 261 (776)
Q Consensus 187 ~~~--~~l~~~~l~--~-g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 261 (776)
..+ .+||++++. + ++.++|+..+... .......++|||||+.|+|.+.+....
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~-------------~~~~~~~~~~spDg~~l~~~~~~~~~~--------- 154 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVG-------------GGLRWADPVLLPERGEVWCMAEEFTGE--------- 154 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCST-------------TCEEEEEEEEETTTTEEEEEEEEECSS---------
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCC-------------CCccccCcEECCCCCEEEEEEecccCC---------
Confidence 875 479999998 5 8888887632100 000134788999999999988642110
Q ss_pred CCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC------CceEEEEcccCCCCCC-CCcceEEEEEeccCCeEEEEEEee
Q 004067 262 KSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG------GPVSWMDLQCGGTDQN-YDEEYLARVNWMHGNILTAQVLNR 334 (776)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~------~~~~~l~~~~~~~~~~-~~~~~~~~~~~SpDg~~l~~~~~~ 334 (776)
+......+|++||+++ ++.+.+ . .+...+..++|||||+.|++.+..
T Consensus 155 -----------------~~~~~~~~i~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 155 -----------------GPSDVRRFLAAVPLDGSAAADRSAVREL---------SDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp -----------------STTCEEEEEEEEETTSTTTTCGGGSEES---------SCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred -----------------CCCCceeEEEEEECCCCccccCCceeEE---------EecCCCcccCceECCCCCEEEEEECC
Confidence 0011236799999999 777766 3 344567789999999999888754
Q ss_pred cC----ceEEEEEEECC-CC---ceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee
Q 004067 335 SQ----TKLKVLKFDIK-TG---QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG 406 (776)
Q Consensus 335 ~~----~~~~l~~~d~~-~g---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~ 406 (776)
.. ....|+++|++ +| +.+.++...... .....|+| +++++|+++.+|..+||++++++++.+
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~--~~~~~~sp--------dg~l~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA--IAQAEWAP--------DGSLIVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC--EEEEEECT--------TSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred CCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce--EcceEECC--------CCeEEEEECCCCCeEEEEEECCCCcee
Confidence 42 34689999999 57 666776642211 11122333 334888888888889999999888888
Q ss_pred ccccCCeEEE--------EEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCE
Q 004067 407 PITEGDWMVE--------QIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRN 478 (776)
Q Consensus 407 ~lt~~~~~~~--------~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~ 478 (776)
+++.+...+. ....++++++ ++|.+.. +. .+||.+++ .+. .+++|+...+.....+++|++.
T Consensus 279 ~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~--~~l~~~d~--~~~----~~~~l~~~~~~~~~~~s~~~~~ 348 (662)
T 3azo_A 279 QLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GA--AVLGILDP--ESG----ELVDAAGPWTEWAATLTVSGTR 348 (662)
T ss_dssp ESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SS--CEEEEEET--TTT----EEEECCSSCCEEEEEEEEETTE
T ss_pred ecccccccccCccccccCceEeEeCCCE-EEEEEEc-Cc--cEEEEEEC--CCC----cEEEecCCCCeEEEEEecCCCE
Confidence 8877543321 1123667777 5666655 43 79999998 443 5677776654333222889999
Q ss_pred EEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCC---CCCCCce
Q 004067 479 FVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESR---YGPPPYK 555 (776)
Q Consensus 479 l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~---~~~~~~p 555 (776)
+++.+++...|++||+++..+++. ++++.... ..+....+...+.+.+...+|..++++++.|++.. ...+++|
T Consensus 349 ~~~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~--~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p 425 (662)
T 3azo_A 349 AVGVAASPRTAYEVVELDTVTGRA-RTIGARHT--DPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPP 425 (662)
T ss_dssp EEEEEEETTEEEEEEEEETTTCCE-EEEESCCC--CSSCGGGSCCCEEEEEECTTSCEEEEEEECCCCSSEECCTTCCCC
T ss_pred EEEEEcCCCCCCEEEEEECCCCce-EEeecCCc--ccCCccccCcceEEEEEcCCCCEEEEEEECCCCccccCCCCCCcc
Confidence 999999999999999999977774 55654322 34556677789999999889999999999998642 0225789
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
+||++||+++.... ..+...++.|+++||+|+++|+||++++|..+.......++..+++|+.+++++++++..+
T Consensus 426 ~vv~~HG~~~~~~~-----~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 500 (662)
T 3azo_A 426 YVVMAHGGPTSRVP-----AVLDLDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTA 500 (662)
T ss_dssp EEEEECSSSSSCCC-----CSCCHHHHHHHTTTCEEEEEECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCccCc-----ccchHHHHHHHhCCCEEEEECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCc
Confidence 99999998765431 2344567889999999999999999888888776665666667799999999999999888
Q ss_pred CCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc--------cccccccCCCCCCccchhcCChhhhhc
Q 004067 636 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT--------FYTEKYMGLPSEDPVGYEYSSVMHHVH 707 (776)
Q Consensus 636 d~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (776)
+.++++|+||||||++++.++.+ |++|+++++.+|+.++..+.. .+.+.+++.+....+.|...+++..+.
T Consensus 501 ~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 579 (662)
T 3azo_A 501 DRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRAD 579 (662)
T ss_dssp CTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTTCSCGGGTTHHHHHTCCTTTCHHHHHHTCGGGGGG
T ss_pred ChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhcccccchhhHhHHHHhCCCccchhHHHhhChHhHhc
Confidence 99999999999999999998886 999999999999988653321 122333444445566777888999999
Q ss_pred cCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 708 KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 708 ~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+++.|+|++||++|.++|+.++.+++++|++.+.+++++++++++|.+...+...++++.+.+||.++|
T Consensus 580 ~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 648 (662)
T 3azo_A 580 RVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKETMVRALEAELSLYAQVF 648 (662)
T ss_dssp GCCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCCCEEEEEETTCCSSCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998666677899999999999875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-51 Score=474.96 Aligned_cols=578 Identities=15% Similarity=0.137 Sum_probs=415.1
Q ss_pred cCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEE
Q 004067 63 SPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKII 142 (776)
Q Consensus 63 SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l 142 (776)
+|||++++|.....+.....||+++..+++.++|++..
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~------------------------------------------ 117 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPN------------------------------------------ 117 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGG------------------------------------------
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHH------------------------------------------
Confidence 59999999999866654568999998877776666310
Q ss_pred EEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC------cEEEEecCCCceeEEeeCCCCCceec
Q 004067 143 MVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC------ELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 143 ~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
.++......+..++|||||++|||..+. +|+++|+++|+..+++.....
T Consensus 118 --------------------~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~----- 172 (710)
T 2xdw_A 118 --------------------ILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK----- 172 (710)
T ss_dssp --------------------GGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC-----
T ss_pred --------------------HhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcc-----
Confidence 1111111124568899999999988752 699999999998876543211
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 296 (776)
+..++|||||+.|+|.+.+...... .+. ........+|++|++.+++
T Consensus 173 -------------~~~~~wspDg~~l~~~~~~~~~~~~-----~~~---------------~~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 173 -------------FSCMAWTHDGKGMFYNAYPQQDGKS-----DGT---------------ETSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp -------------SCCEEECTTSSEEEEEECCCCSSCC-----SSS---------------CCCCCCCCEEEEEETTSCG
T ss_pred -------------cceEEEEeCCCEEEEEEECCccccc-----ccc---------------ccccCCCCEEEEEECCCCc
Confidence 2368899999999999865431100 000 0001122579999999887
Q ss_pred eE--EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCc-eEEEEEEECCC------C--ceEEEEEeccCceeec
Q 004067 297 VS--WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQT-KLKVLKFDIKT------G--QRKVILVEELDSWVNL 365 (776)
Q Consensus 297 ~~--~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~l~~~d~~~------g--~~~~l~~~~~~~~~~~ 365 (776)
.. .+... ..+......+.|||||++|++.+.+... ...|+++|+++ + ..+.++.+....+.
T Consensus 220 ~~~~~v~~~------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-- 291 (710)
T 2xdw_A 220 SEDILCAEF------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-- 291 (710)
T ss_dssp GGCEEEECC------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE--
T ss_pred ccceEEecc------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE--
Confidence 32 33221 2234456789999999999888776543 67899999987 5 56777654433211
Q ss_pred ccccccCCCCccccCCeEEEEeccCC-ceEEEEEeCCCce---eeccccCCe--EEEEEEeecCCCcEEEEEEccCCCce
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTG-FRHLYLHDINGTC---LGPITEGDW--MVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g-~~~l~~~~~~g~~---~~~lt~~~~--~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
.+ +.+++.+++.++.++ ..+|++++++++. .+.|+.+.. .+..+. |++ ++.+++....++.
T Consensus 292 --~~-------s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~~~lv~~~~~~g~-- 358 (710)
T 2xdw_A 292 --YV-------TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA-CVR-SNFLVLCYLHDVK-- 358 (710)
T ss_dssp --EE-------EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEE-EET-TTEEEEEEEETTE--
T ss_pred --EE-------eccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEE-EEc-CCEEEEEEEECCE--
Confidence 12 334667888887644 6799999998764 356665532 444443 664 4557777766543
Q ss_pred eeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce-eEeeccCCCchhhhh
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL-VLPLYEQPLTVPRIK 517 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~~~~~~~ 517 (776)
.+||.+++. +|+ ..+.|+...+ +..++++||++.+++.+++..+|+.||++|..+++. .+.+.... . ..++
T Consensus 359 ~~l~~~~~~-~g~----~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~-~-~~~~ 431 (710)
T 2xdw_A 359 NTLQLHDLA-TGA----LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVT-V-KGID 431 (710)
T ss_dssp EEEEEEETT-TCC----EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECC-C-TTCC
T ss_pred EEEEEEECC-CCC----EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecc-c-CCcC
Confidence 678888873 233 3466665444 456789999999999999999999999999988772 23343321 1 1233
Q ss_pred ccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECC
Q 004067 518 RLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDN 596 (776)
Q Consensus 518 ~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~ 596 (776)
...+ ..+.+.+++.||..++++++.|++.. ..++.|+||++||+++... .. .+......|++ +||+|+++|+
T Consensus 432 ~~~~-~~~~~~~~~~dg~~i~~~~~~p~~~~-~~~~~P~vl~~hGg~~~~~-~~----~~~~~~~~l~~~~G~~v~~~d~ 504 (710)
T 2xdw_A 432 ASDY-QTVQIFYPSKDGTKIPMFIVHKKGIK-LDGSHPAFLYGYGGFNISI-TP----NYSVSRLIFVRHMGGVLAVANI 504 (710)
T ss_dssp GGGE-EEEEEEEECTTSCEEEEEEEEETTCC-CSSCSCEEEECCCCTTCCC-CC----CCCHHHHHHHHHHCCEEEEECC
T ss_pred cccc-EEEEEEEEcCCCCEEEEEEEecCCCC-CCCCccEEEEEcCCCCCcC-CC----cccHHHHHHHHhCCcEEEEEcc
Confidence 3333 57889999999999999999998742 2357899999999876543 11 23333456667 9999999999
Q ss_pred CCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 597 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 597 rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
||+|+++..|........+...++|+.+++++|+++..++.++|+|+|+||||++++.++.++|++|+++|+.+|+.++.
T Consensus 505 rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~ 584 (710)
T 2xdw_A 505 RGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584 (710)
T ss_dssp TTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTT
T ss_pred CCCCCCChHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHh
Confidence 99999998887765555556678999999999999988899999999999999999999999999999999999998875
Q ss_pred ccccc-----ccccccCCCCC--CccchhcCChhhhhc-----cCCC-cEEEEecCCCCccChHHHHHHHHHHHHC----
Q 004067 677 GYDTF-----YTEKYMGLPSE--DPVGYEYSSVMHHVH-----KMKG-KLLLVHGMIDENVHFRHTARLINALVAA---- 739 (776)
Q Consensus 677 ~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~i~~-P~lii~G~~D~~v~~~~~~~~~~~l~~~---- 739 (776)
.+... +...+ +.+.. ....+...+|+..+. +++. |+|++||.+|.+|++.++.+++++|++.
T Consensus 585 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~ 663 (710)
T 2xdw_A 585 KFHKYTIGHAWTTDY-GCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRS 663 (710)
T ss_dssp TGGGSTTGGGGHHHH-CCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTS
T ss_pred hccccCCChhHHHhC-CCCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccc
Confidence 44221 11222 33321 112345667888888 7886 9999999999999999999999999987
Q ss_pred ---CCCeEEEEecCCCCCCCCC-CcHHHHHHHHHHHHHHhC
Q 004067 740 ---RKPYEILIFPDERHMPRRH-RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 740 ---~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~fl~~~l 776 (776)
+.++++++++++||.+... ....+.++.+.+||.++|
T Consensus 664 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 704 (710)
T 2xdw_A 664 RKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCL 704 (710)
T ss_dssp TTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 8899999999999998543 345788999999998874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=475.63 Aligned_cols=534 Identities=20% Similarity=0.225 Sum_probs=408.6
Q ss_pred cCCeeeEEEeecCCCceEEEEeC--CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-------cEEE
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVPL--PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-------ELHV 194 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~~--~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-------~l~~ 194 (776)
...+....||| ||++|+|.. ++.+.+|++++++.+ +++......+..+.|||| +++|+++. +||.
T Consensus 21 ~~~~~~~~~~~---DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVV---DGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEE---TTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCC---CCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC--eEEEEeccCCCCcceEEEE
Confidence 35688999999 999999973 677888888899888 888766434788999999 67787653 5888
Q ss_pred Eec--CCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 195 LNL--LINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 195 ~~l--~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
+++ +++.. +++.... ....+|||||+.++|.+....
T Consensus 95 ~~~~~~g~~~-~l~~~~~-------------------~~~~~~s~dg~~~~~~s~~~~---------------------- 132 (582)
T 3o4h_A 95 VNTSRPGEEQ-RLEAVKP-------------------MRILSGVDTGEAVVFTGATED---------------------- 132 (582)
T ss_dssp EETTSTTCCE-ECTTSCS-------------------BEEEEEEECSSCEEEEEECSS----------------------
T ss_pred EeccCCCccc-cccCCCC-------------------ceeeeeCCCCCeEEEEecCCC----------------------
Confidence 888 54443 5543322 224579999999998874322
Q ss_pred ecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 273 HAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
.+.+||+++++.+++... .. ..++|||||+.|++.+.+..+...|++||+++|+.+
T Consensus 133 -------------~~~l~d~~~g~~~~l~~~---------~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 133 -------------RVALYALDGGGLRELARL---------PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp -------------CEEEEEEETTEEEEEEEE---------SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred -------------CceEEEccCCcEEEeecC---------CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence 134889999988877432 11 578999999999988876656677999999999998
Q ss_pred EEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEE-------EEeecCCC
Q 004067 353 VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQ-------IVGVNEAS 425 (776)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~-------~~~~s~dg 425 (776)
.++.+.... ....|+| +++.++.++.+|..+||+||+++++.+.++.++..+.. ...|||||
T Consensus 189 ~l~~~~~~~---~~~~~Sp--------DG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 257 (582)
T 3o4h_A 189 VFDSGEGSF---SSASISP--------GMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG 257 (582)
T ss_dssp EECCSSCEE---EEEEECT--------TSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTS
T ss_pred EeecCCCcc---ccceECC--------CCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCC
Confidence 886554321 2234444 33345577778888999999999887744444322221 11299999
Q ss_pred cEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEe
Q 004067 426 GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 426 ~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (776)
.+++.+..++. .+||.+ |+ ... +....+..++|| ||+.+ +..++..+|+++++++..+ ..++
T Consensus 258 -~~~~~~~~~g~--~~l~~~-----g~-----~~~-~~~~~v~~~~~s-dg~~l-~~~s~~~~p~~l~~~d~~~--~~~~ 319 (582)
T 3o4h_A 258 -RLAVVARREGR--SAVFID-----GE-----RVE-APQGNHGRVVLW-RGKLV-TSHTSLSTPPRIVSLPSGE--PLLE 319 (582)
T ss_dssp -CEEEEEEETTE--EEEEET-----TE-----EEC-CCSSEEEEEEEE-TTEEE-EEEEETTEEEEEEEETTCC--EEEC
T ss_pred -cEEEEEEcCCc--EEEEEE-----CC-----eec-cCCCceEEEEec-CCEEE-EEEcCCCCCCeEEEEcCCC--ceEE
Confidence 68888877653 788887 21 221 122346678999 88655 6667788899999998744 3454
Q ss_pred eccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH
Q 004067 506 LYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 585 (776)
Q Consensus 506 l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~ 585 (776)
+. ..+.+ +..+...+.+.+++.+|..++++++.|++.. ++.|+||++||+++... . ..+...++.|+
T Consensus 320 l~----~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~p~~~~---~~~p~vv~~HG~~~~~~-~----~~~~~~~~~l~ 386 (582)
T 3o4h_A 320 GG----LPEDL-RRSIAGSRLVWVESFDGSRVPTYVLESGRAP---TPGPTVVLVHGGPFAED-S----DSWDTFAASLA 386 (582)
T ss_dssp CC----CCHHH-HHTEEEEEEEEEECTTSCEEEEEEEEETTSC---SSEEEEEEECSSSSCCC-C----SSCCHHHHHHH
T ss_pred Ee----cCCcc-ccccCcceEEEEECCCCCEEEEEEEcCCCCC---CCCcEEEEECCCccccc-c----cccCHHHHHHH
Confidence 51 11111 1456678999999999999999999998742 47899999999876643 1 23455688999
Q ss_pred hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEE
Q 004067 586 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 665 (776)
Q Consensus 586 ~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~ 665 (776)
++||+|+++|+||++++|..+.......++...++|+.++++++.++..++ +++|+||||||++++.++.++|+++++
T Consensus 387 ~~G~~v~~~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~ 464 (582)
T 3o4h_A 387 AAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKA 464 (582)
T ss_dssp HTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSC
T ss_pred hCCCEEEEeccCCCCCCchhHHhhhhhhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEE
Confidence 999999999999999999887776666666777999999999999987666 999999999999999999999999999
Q ss_pred EEEcCCCCCccccccc-------ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 666 AVSGAPVTSWDGYDTF-------YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 666 ~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
+++.+|+.++..+... +.+.+++ .....+...+++..+.++++|+|++||++|.++|+.++.++++++++
T Consensus 465 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 541 (582)
T 3o4h_A 465 GVAGASVVDWEEMYELSDAAFRNFIEQLTG---GSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLA 541 (582)
T ss_dssp EEEESCCCCHHHHHHTCCHHHHHHHHHHTT---TCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHH
T ss_pred EEEcCCccCHHHHhhcccchhHHHHHHHcC---cCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHHHHHHHh
Confidence 9999999887543211 2233333 45567788899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 739 ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 739 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
.+.+++++++|+++|.+...+...++++.+.+||+++|
T Consensus 542 ~g~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~l 579 (582)
T 3o4h_A 542 RGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQR 579 (582)
T ss_dssp TTCCEEEEEETTCCSSCCBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998666778899999999999875
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=466.34 Aligned_cols=573 Identities=15% Similarity=0.138 Sum_probs=412.3
Q ss_pred eEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
..+|||++|+|.+...+.....||+++..+++.++|++.+. ++.
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~------------------------------~a~------ 117 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNG------------------------------WSK------ 117 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGG------------------------------SSS------
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHH------------------------------hcc------
Confidence 34699999999998766545789999988888877774111 000
Q ss_pred EEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC------CcEEEEecCCCceeEEeeCCCCCce
Q 004067 141 IIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD------CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 141 ~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~------~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
.....+..++|||||++|||..+ ..|+++|+++|+..+......
T Consensus 118 --------------------------~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~---- 167 (695)
T 2bkl_A 118 --------------------------DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG---- 167 (695)
T ss_dssp --------------------------SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC----
T ss_pred --------------------------CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc----
Confidence 00012456788888888888864 369999999998641111000
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.. ...++|||||+.|+|.+.+...... . .+.....+|++|++.+
T Consensus 168 ---~~----------~~~~~wspDg~~l~~~~~d~~~~~~---------------~--------~~~~~~~~v~~~~l~t 211 (695)
T 2bkl_A 168 ---GK----------YATPKWTPDSKGFYYEWLPTDPSIK---------------V--------DERPGYTTIRYHTLGT 211 (695)
T ss_dssp ---CT----------TCCCEECTTSSEEEEEECCCCTTSC---------------G--------GGGGGGCEEEEEETTS
T ss_pred ---cc----------ccceEEecCCCEEEEEEecCCCCCc---------------c--------ccCCCCCEEEEEECCC
Confidence 00 1367899999999999865431000 0 0001125799999998
Q ss_pred Cce--EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccC
Q 004067 295 GPV--SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 295 ~~~--~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 372 (776)
++. ..+... ..+...+..+.|||||++|++.+........||+++..+++.+.++......+...
T Consensus 212 ~~~~~~lv~~~------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~------- 278 (695)
T 2bkl_A 212 EPSKDTVVHER------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVH------- 278 (695)
T ss_dssp CGGGCEEEECC------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEE-------
T ss_pred CchhceEEEec------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEE-------
Confidence 873 333221 23335677899999999888887665456789999988888888887654322211
Q ss_pred CCCccccCCeEEEEeccC-CceEEEEEeCCCcee---eccccC--CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 373 DKGVTKYSGGFIWASEKT-GFRHLYLHDINGTCL---GPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~-g~~~l~~~~~~g~~~---~~lt~~--~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
..+++ +++.++.+ +...|+++++++++. +.++.+ +..+..+. ++ ++.+++....++. .+||.++
T Consensus 279 ----~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~-~~--~~~lv~~~~~dg~--~~l~~~~ 348 (695)
T 2bkl_A 279 ----AWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS-IV--GGHLSLEYLKDAT--SEVRVAT 348 (695)
T ss_dssp ----EETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE-EE--TTEEEEEEEETTE--EEEEEEE
T ss_pred ----ecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE-EE--CCEEEEEEEECCE--EEEEEEe
Confidence 11344 77777654 467999999987653 556554 33444443 55 4567777766653 7899999
Q ss_pred eCCCCCCccccceeecCC-CC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCc
Q 004067 447 LYPDWNHTLEAPVKLTNG-KG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPP 524 (776)
Q Consensus 447 ~~~~g~~~~~~~~~l~~~-~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 524 (776)
+ .|+ ..+.+... .+ +..++++||++.+++.+++..+|+.||++|..+++. +.+..... .++... ...
T Consensus 349 ~--~g~----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~~~~~---~~~~~~-~~~ 417 (695)
T 2bkl_A 349 L--KGK----PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWAKVDV---PMNPEQ-YQV 417 (695)
T ss_dssp T--TCC----EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEEECCC---SSCGGG-EEE
T ss_pred C--CCC----eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEecCCC---CCCHHH-CeE
Confidence 7 453 34555533 23 345688999999999999999999999999988873 44443221 133322 367
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~ 604 (776)
+.+.+++.||..++++++.|++.. ..++.|+||++||+++... .. .+......|+++||+|+++|+||+|++|.
T Consensus 418 ~~~~~~~~dg~~i~~~~~~p~~~~-~~~~~p~vl~~hGg~~~~~-~~----~~~~~~~~l~~~G~~v~~~d~rG~g~~g~ 491 (695)
T 2bkl_A 418 EQVFYASKDGTKVPMFVVHRKDLK-RDGNAPTLLYGYGGFNVNM-EA----NFRSSILPWLDAGGVYAVANLRGGGEYGK 491 (695)
T ss_dssp EEEEEECTTSCEEEEEEEEETTCC-CSSCCCEEEECCCCTTCCC-CC----CCCGGGHHHHHTTCEEEEECCTTSSTTCH
T ss_pred EEEEEECCCCCEEEEEEEECCCCC-CCCCccEEEEECCCCcccc-CC----CcCHHHHHHHhCCCEEEEEecCCCCCcCH
Confidence 889999999999999999998742 2257899999999876643 11 23334566888999999999999999998
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc---
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF--- 681 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~--- 681 (776)
.|............++|+.+++++|+++..++.++|+|+|+||||++++.++.++|++|+++|+.+|+.++..+...
T Consensus 492 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~ 571 (695)
T 2bkl_A 492 AWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSG 571 (695)
T ss_dssp HHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTG
T ss_pred HHHHhhHhhcCCCcHHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCC
Confidence 88776655555667899999999999998889999999999999999999999999999999999999887654321
Q ss_pred --ccccccCCCCCC--ccchhcCChhhhhccCC--CcEEEEecCCCCccChHHHHHHHHHHHH---CCCCeEEEEecCCC
Q 004067 682 --YTEKYMGLPSED--PVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVA---ARKPYEILIFPDER 752 (776)
Q Consensus 682 --~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~---~~~~~~~~~~~~~~ 752 (776)
+...+ +.+... ...+...+|+..+.+++ +|+|++||.+|.+|++.++.+++++|++ .+.++++++++++|
T Consensus 572 ~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g 650 (695)
T 2bkl_A 572 RTWIPEY-GTAEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAG 650 (695)
T ss_dssp GGGHHHH-CCTTSHHHHHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEEEEEETTCB
T ss_pred cchHHHh-CCCCCHHHHHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEEEEEeCCCC
Confidence 11222 333211 12345667888888776 6999999999999999999999999998 67899999999999
Q ss_pred CCCCC-CCcHHHHHHHHHHHHHHhC
Q 004067 753 HMPRR-HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 753 H~~~~-~~~~~~~~~~~~~fl~~~l 776 (776)
|.+.. .....+.+..+.+||.++|
T Consensus 651 H~~~~~~~~~~~~~~~~~~fl~~~l 675 (695)
T 2bkl_A 651 HGGADQVAKAIESSVDLYSFLFQVL 675 (695)
T ss_dssp TTBCSCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 98743 3446778899999999875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-50 Score=467.18 Aligned_cols=572 Identities=14% Similarity=0.133 Sum_probs=403.4
Q ss_pred eeEcCCCCEEEEEeCCCCcCcceEEEEecC---CCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 60 IGFSPDDNLITYLLSPDHSLSRKVFSFDPK---TCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
...+|||++++|.+...+.....||+++.. +++.++|++...
T Consensus 112 ~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~----------------------------------- 156 (741)
T 1yr2_A 112 GLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNT----------------------------------- 156 (741)
T ss_dssp CCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGG-----------------------------------
T ss_pred CCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHH-----------------------------------
Confidence 345699999999998766545789999987 777777764110
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC------cEEEEecCCCceeEEeeCCC
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC------ELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~~~~lt~~~~ 210 (776)
++......+..++|||||++|||..+. +|+++|+++|+....+....
T Consensus 157 ---------------------------l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~ 209 (741)
T 1yr2_A 157 ---------------------------WAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWV 209 (741)
T ss_dssp ---------------------------CC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEE
T ss_pred ---------------------------hccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCc
Confidence 110000124557888888888888752 59999999998766532211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
. +..++|||| +.|+|.+.+....... + .+.+...+|+++
T Consensus 210 ~------------------~~~~~wspD-~~l~~~~~~~~~~~~~-~---------------------~~~~~~~~v~~~ 248 (741)
T 1yr2_A 210 K------------------FSGLAWLGN-DALLYSRFAEPKEGQA-F---------------------QALNYNQTVWLH 248 (741)
T ss_dssp E------------------SCCCEESTT-SEEEEEECCCC------------------------------CCCCCEEEEE
T ss_pred e------------------eccEEEECC-CEEEEEEecCcccccc-c---------------------ccCCCCCEEEEE
Confidence 0 236789999 9999988654310000 0 001112568999
Q ss_pred EcCCCce--EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC-ceEEEEEEECCCC--c-eEEEEEeccCceee
Q 004067 291 SAAGGPV--SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKTG--Q-RKVILVEELDSWVN 364 (776)
Q Consensus 291 d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~l~~~d~~~g--~-~~~l~~~~~~~~~~ 364 (776)
++.+++. ..+... ......+..+.|||||++|++...+.. ....|+++|++++ + .+.|+......+..
T Consensus 249 ~lgt~~~~~~lv~~~------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 249 RLGTPQSADQPVFAT------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF 322 (741)
T ss_dssp ETTSCGGGCEEEECC------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred ECCCCchhCEEEecc------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence 9988763 233221 222335778999999998888876542 3568999999988 6 77776554332211
Q ss_pred cccccccCCCCccccCCeEEEEeccCC-ceEEEEEeCCC--ceeeccccCCe-EEEEEEeecCCCcEEEEEEccCCCcee
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTG-FRHLYLHDING--TCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g-~~~l~~~~~~g--~~~~~lt~~~~-~~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
+ ..+++.+++.++.++ ..+|+++++++ ++.+.++.+.. .+..+ .++ ++.+++....++. .
T Consensus 323 ----~-------~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~-~~~--~~~lv~~~~~dg~--~ 386 (741)
T 1yr2_A 323 ----V-------DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESV-GIA--GNRLFASYIHDAK--S 386 (741)
T ss_dssp ----E-------EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEE-EEE--BTEEEEEEEETTE--E
T ss_pred ----E-------eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEE-EEE--CCEEEEEEEECCE--E
Confidence 1 234666888887643 67999999987 35666665533 33333 244 6678888776653 7
Q ss_pred eEEEEEeCCCCCCccccceeecCC--CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhc
Q 004067 441 HLYCAKLYPDWNHTLEAPVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKR 518 (776)
Q Consensus 441 ~l~~~~~~~~g~~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 518 (776)
+||.+++ +|+ ..+.|+.. ..+..++++||++.|++.+++..+|++||++|..+++ .+.+.. ... .++.
T Consensus 387 ~l~~~~~--~g~----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~-~~~l~~-~~~--~~~~ 456 (741)
T 1yr2_A 387 QVLAFDL--DGK----PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK-TTPWEP-VHL--TFDP 456 (741)
T ss_dssp EEEEEET--TSC----EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE-EEECSC-CCC--SSCG
T ss_pred EEEEEeC--CCC----ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEEec-CCC--CCCh
Confidence 8999997 454 45566532 2356779999999999999999999999999998877 344433 221 2333
Q ss_pred cCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCC
Q 004067 519 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 598 (776)
Q Consensus 519 ~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg 598 (776)
.. ...+.+.+++.||..++++++.|++. .++.|+||++||+++... . ..+......|+++||+|+++|+||
T Consensus 457 ~~-~~~~~~~~~~~dg~~i~~~~~~p~~~---~~~~p~vl~~hGg~~~~~-~----~~~~~~~~~l~~~G~~v~~~d~rG 527 (741)
T 1yr2_A 457 AD-FRVEQVFYPSKDGTKVPMFIVRRKDA---KGPLPTLLYGYGGFNVAL-T----PWFSAGFMTWIDSGGAFALANLRG 527 (741)
T ss_dssp GG-EEEEEEEEECTTSCEEEEEEEEETTC---CSCCCEEEECCCCTTCCC-C----CCCCHHHHHHHTTTCEEEEECCTT
T ss_pred hH-CEEEEEEEEcCCCCEEEEEEEecCCC---CCCCcEEEEECCCCCccC-C----CCcCHHHHHHHHCCcEEEEEecCC
Confidence 23 36788999999999999999999863 257899999999876543 1 123334567889999999999999
Q ss_pred CCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc
Q 004067 599 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678 (776)
Q Consensus 599 ~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 678 (776)
+|++|..|........+...++|+.+++++|+++..+++++|+|+|+||||++++.++.++|++|+++|+.+|+.++..+
T Consensus 528 ~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~ 607 (741)
T 1yr2_A 528 GGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRF 607 (741)
T ss_dssp SSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSG
T ss_pred CCCCCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccc
Confidence 99999888776555555567899999999999998889999999999999999999999999999999999999887654
Q ss_pred ccc-----ccccccCCCCC--CccchhcCChhhhhcc-CC-CcEEEEecCCCCccChHHHHHHHHHHHH---CCCCeEEE
Q 004067 679 DTF-----YTEKYMGLPSE--DPVGYEYSSVMHHVHK-MK-GKLLLVHGMIDENVHFRHTARLINALVA---ARKPYEIL 746 (776)
Q Consensus 679 ~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~-i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~---~~~~~~~~ 746 (776)
... +...+ +.+.. ....+...+|+..+.+ ++ .|+|++||.+|.+|++.++.+++++|+. .+.+++++
T Consensus 608 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~ 686 (741)
T 1yr2_A 608 DQFTAGRYWVDDY-GYPEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIR 686 (741)
T ss_dssp GGSTTGGGGHHHH-CCTTSHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEE
T ss_pred cCCCCCchhHHHc-CCCCCHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEE
Confidence 321 11112 33321 1133457788888887 88 4999999999999999999999999999 88899999
Q ss_pred EecCCCCCCCCC-CcHHHHHHHHHHHHHHhC
Q 004067 747 IFPDERHMPRRH-RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 747 ~~~~~~H~~~~~-~~~~~~~~~~~~fl~~~l 776 (776)
+++++||.+... ....++...+.+||.++|
T Consensus 687 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 717 (741)
T 1yr2_A 687 IETRAGHGSGKPIDKQIEETADVQAFLAHFT 717 (741)
T ss_dssp EC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999987443 334688899999998864
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=450.40 Aligned_cols=523 Identities=14% Similarity=0.117 Sum_probs=384.4
Q ss_pred ccCceeCCCCCEEEEEECC------cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEE
Q 004067 172 VIDPHLSSDGTMIAFVRDC------ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFT 245 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~ 245 (776)
+..+.|||||++|||..+. .|+++|+++|+..+++..... ...++|| ||+.|+|.
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k------------------~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVK------------------FSGISWL-GNEGFFYS 191 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEE------------------SCCCEEE-TTTEEEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCce------------------eccEEEe-CCCEEEEE
Confidence 5567899999999998752 599999999997765432210 2367899 99999999
Q ss_pred EecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce--EEEEcccCCCCCCC-CcceEEEEEec
Q 004067 246 QVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV--SWMDLQCGGTDQNY-DEEYLARVNWM 322 (776)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~-~~~~~~~~~~S 322 (776)
+.+..... .+. ..+...+|+++++.++.. ..+... .. +......+.||
T Consensus 192 ~~~~~~~~--~~~---------------------~~~~~~~v~~~~lgt~~~~~~~v~~~------~~~~~~~~~~~~~S 242 (693)
T 3iuj_A 192 SYDKPDGS--ELS---------------------ARTDQHKVYFHRLGTAQEDDRLVFGA------IPAQHHRYVGATVT 242 (693)
T ss_dssp ESSCCC------------------------------CCCCEEEEEETTSCGGGCEEEESC------SGGGCCSEEEEEEC
T ss_pred EecCcccc--ccc---------------------ccCCCcEEEEEECCCCcccceEEEec------CCCCCeEEEEEEEc
Confidence 86532100 000 001125689999987653 334221 22 23346779999
Q ss_pred cCCeEEEEEEeecCceEEEEEEECCCC--ceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCC-ceEEEEEe
Q 004067 323 HGNILTAQVLNRSQTKLKVLKFDIKTG--QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG-FRHLYLHD 399 (776)
Q Consensus 323 pDg~~l~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g-~~~l~~~~ 399 (776)
|||++|++....+.....||++|++++ ..+.++......+. + ++.+++.++|.++.++ ..+|+.++
T Consensus 243 pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-------~----~~~~g~~l~~~t~~~~~~~~l~~~d 311 (693)
T 3iuj_A 243 EDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS-------L----VDNKGSTLYLLTNRDAPNRRLVTVD 311 (693)
T ss_dssp TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE-------E----EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred CCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE-------E----EeccCCEEEEEECCCCCCCEEEEEe
Confidence 999988888776655568999999877 56777655433221 1 1334677888887654 56999999
Q ss_pred CCCcee---eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC--CeEEEEEcC
Q 004067 400 INGTCL---GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK--GKHVAVLDH 474 (776)
Q Consensus 400 ~~g~~~---~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~--~~~~~~~sp 474 (776)
++++.. +.|+.+...+. .|+++|++|++....++. .+|+.+++ +|. ..+.|+... .+..++++|
T Consensus 312 ~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~--~~l~~~d~--~g~----~~~~l~~p~~~~~~~~~~~~ 380 (693)
T 3iuj_A 312 AANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDAT--ARVEQFDY--EGK----RVREVALPGLGSVSGFNGKH 380 (693)
T ss_dssp TTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTE--EEEEEECT--TSC----EEEEECCSSSSEEEECCCCT
T ss_pred CCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCe--eEEEEEEC--CCC----eeEEeecCCCceEEeeecCC
Confidence 988764 56666544333 589999999998877653 57888887 454 445554322 244568889
Q ss_pred CcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCc
Q 004067 475 NMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPY 554 (776)
Q Consensus 475 dg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~ 554 (776)
|++.|++..++..+|+.|+.+|..+++. +.+..... .++...+ ..+.+.+++.||..++++++.|++. ...++.
T Consensus 381 d~~~l~~~~ss~~tP~~l~~~d~~~g~~-~~l~~~~~---~~~~~~~-~~~~~~~~~~dg~~i~~~l~~p~~~-~~~~~~ 454 (693)
T 3iuj_A 381 DDPALYFGFENYAQPPTLYRFEPKSGAI-SLYRASAA---PFKPEDY-VSEQRFYQSKDGTRVPLIISYRKGL-KLDGSN 454 (693)
T ss_dssp TCSCEEEEEECSSSCCEEEEECTTTCCE-EEEECCCS---SCCGGGE-EEEEEEEECTTSCEEEEEEEEESSC-CCSSCC
T ss_pred CCCEEEEEecCCCCCCEEEEEECCCCeE-EEEEeCCC---CcChhhC-eeEEEEEecCCCcEEEEEEEecCCC-CCCCCc
Confidence 9999999999999999999999988764 44543322 2333333 5788999999999999999999864 223578
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+||++||+++... . ..+...+..|+++||+|+++|+||+|++|..|........+...++|+.+++++|+++..
T Consensus 455 P~ll~~hGg~~~~~-~----~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 529 (693)
T 3iuj_A 455 PTILYGYGGFDVSL-T----PSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGY 529 (693)
T ss_dssp CEEEECCCCTTCCC-C----CCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTS
T ss_pred cEEEEECCCCCcCC-C----CccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCC
Confidence 99999999876543 1 233344667888999999999999999999888776666666678999999999999988
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc-----ccccccCCCCCCcc---chhcCChhhhh
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-----YTEKYMGLPSEDPV---GYEYSSVMHHV 706 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~ 706 (776)
+|+++|+|+|+||||++++.++.++|++|+++|+.+|+.++..+... +... ++.+..... .+...+|+..+
T Consensus 530 ~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~-~g~p~~~~~~~~~~~~~sp~~~~ 608 (693)
T 3iuj_A 530 TRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYD-YGTSADSEAMFDYLKGYSPLHNV 608 (693)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHH-HCCTTSCHHHHHHHHHHCHHHHC
T ss_pred CCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHH-cCCccCHHHHHHHHHhcCHHHhh
Confidence 99999999999999999999999999999999999999987654321 1111 244433322 35577899999
Q ss_pred cc-CCCc-EEEEecCCCCccChHHHHHHHHHHHHC---CCCeEEEEecCCCCCCCCC-CcHHHHHHHHHHHHHHhC
Q 004067 707 HK-MKGK-LLLVHGMIDENVHFRHTARLINALVAA---RKPYEILIFPDERHMPRRH-RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 707 ~~-i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~---~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~fl~~~l 776 (776)
.+ ++.| +|++||.+|.+|++.++.+++++|++. +.++++++++++||.+... ....+.++.+.+||.++|
T Consensus 609 ~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 684 (693)
T 3iuj_A 609 RPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEM 684 (693)
T ss_dssp CTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHc
Confidence 88 8887 999999999999999999999999988 4789999999999998553 567788899999999876
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-47 Score=437.45 Aligned_cols=520 Identities=14% Similarity=0.121 Sum_probs=369.5
Q ss_pred ccCceeC-CCCCEEEEEECC------cEEEEecCCC-ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEE
Q 004067 172 VIDPHLS-SDGTMIAFVRDC------ELHVLNLLIN-EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIA 243 (776)
Q Consensus 172 ~~~~~~S-pDg~~la~~~~~------~l~~~~l~~g-~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~ 243 (776)
...+.|| |||++|||+.+. +||++++++| +. +.. . +... ...++|||||+.|+
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~-~----~~~~------------~~~~~WspDg~~l~ 236 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IAD-K----VSGT------------NGEIVWGPDHTSLF 236 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCC-C----EEEE------------CSCCEECSSTTEEE
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCc-c----ccCc------------eeeEEEecCCCEEE
Confidence 4567899 999999998753 3999999998 62 110 0 0000 23678999999999
Q ss_pred EEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE--EEEcccCCCCCCCCcceEEEEEe
Q 004067 244 FTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS--WMDLQCGGTDQNYDEEYLARVNW 321 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~ 321 (776)
|.+.+... ...+|+++++.+++.. .+.. .........+.|
T Consensus 237 y~~~d~~~-------------------------------~~~~v~~~~lgt~~~~~~lv~~-------~~~~~~~~~~~~ 278 (751)
T 2xe4_A 237 YVTKDETL-------------------------------RENKVWRHVMGKLQSEDVCLYE-------EHNPLFSAFMYK 278 (751)
T ss_dssp EEEECTTC-------------------------------CEEEEEEEETTSCGGGCEEEEE-------CCCTTCEEEEEE
T ss_pred EEEECCCC-------------------------------CCCEEEEEECCCCchhcEEEEe-------cCCCceEEEEEE
Confidence 99864321 1147899999887532 2211 112234568899
Q ss_pred ccCCeEEEEEEeecCceEEEEEEECCCC--ce--EEEEEeccCceeecccccccCCCCccccCCeEEEEeccC--CceEE
Q 004067 322 MHGNILTAQVLNRSQTKLKVLKFDIKTG--QR--KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT--GFRHL 395 (776)
Q Consensus 322 SpDg~~l~~~~~~~~~~~~l~~~d~~~g--~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--g~~~l 395 (776)
||||++|++..... ....||++|++++ +. +.++..... ..|++. -..++.++|.++.+ +..+|
T Consensus 279 SpDg~~l~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~~~~~------~~~s~~----~~~g~~l~~~t~~~~a~~~~L 347 (751)
T 2xe4_A 279 AADTNTLCIGSQSP-ETAEVHLLDLRKGNAHNTLEIVRPREKG------VRYDVQ----MHGTSHLVILTNEGGAVNHKL 347 (751)
T ss_dssp CTTSSEEEEEEECS-SCEEEEEEESSSCTTCCCEEESSCCCTT------CCEEEE----EETTTEEEEEECTTTCTTCEE
T ss_pred CCCCCEEEEEecCC-CCceEEEEECCCCCCCceeEEeecCCCC------ceEEEe----eeeCCEEEEEeCCCCCCCcEE
Confidence 99999888887654 5678999999886 34 555433211 112221 01256788888875 67899
Q ss_pred EEEeCCC-ceeec-cccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCC-----CCCCcccc-ceeecCCCCe
Q 004067 396 YLHDING-TCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP-----DWNHTLEA-PVKLTNGKGK 467 (776)
Q Consensus 396 ~~~~~~g-~~~~~-lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~-----~g~~~~~~-~~~l~~~~~~ 467 (776)
|++++++ ++.+. +..+...+ .+..++.+++.|++....++. .+|+.+++.. .+. . .+.|+.....
T Consensus 348 ~~~d~~~~~~~~~~li~~~~~~-~l~~~~~~~~~lv~~~~~~g~--~~l~~~dl~~~~~~~~~g----~~~~~l~l~~~~ 420 (751)
T 2xe4_A 348 LIAPRGQPSDWSHVLVDHSEDV-FMESIAVRSNYLVVAGRRAGL--TRIWTMMADSQDGVFKAG----TGLREVVMEEPI 420 (751)
T ss_dssp EEEETTSTTCCCCEEECCCSSE-EEEEEEECSSEEEEEEEETTE--EEEEEEECCTTTSCCCTT----TCCEECCCCCSS
T ss_pred EEEcCCCcccceeeEECCCCCc-EEEEEEEECCEEEEEEEeCCE--EEEEEEecccccccccCC----ccceEECCCCce
Confidence 9999886 45455 44443322 122355567889999887654 6788888510 122 3 5566433322
Q ss_pred EEEEE------cCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEE
Q 004067 468 HVAVL------DHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGAL 541 (776)
Q Consensus 468 ~~~~~------spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 541 (776)
..+.+ ++|++.+++.+++..+|++++.++..+++. +.+..... ...++...+ ..+.+.+++.||..+++++
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~-~~l~~~~~-~~~~~~~~~-~~~~~~~~s~dG~~i~~~l 497 (751)
T 2xe4_A 421 FTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR-TAVKVREV-GGGFDAANY-KVERRFATAPDQTKIPLSV 497 (751)
T ss_dssp CEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE-EEEEECCC-CTTCCGGGE-EEEEEEEECTTCCEEEEEE
T ss_pred eEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE-EEEecccc-ccCCCccce-EEEEEEEECCCCcEEEEEE
Confidence 23344 579999999999999999999999988763 44543321 112333334 4788999999999999999
Q ss_pred EcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh-hhhhccCCccHH
Q 004067 542 YKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA-SIKHNCGRIDAE 620 (776)
Q Consensus 542 ~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~-~~~~~~~~~~~~ 620 (776)
+.|++.. ..++.|+||++||+++... .. .|...+..|+++||+|+++|+||+|++|..|.. ......+...++
T Consensus 498 ~~p~~~~-~~~~~P~vl~~HGg~~~~~-~~----~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~ 571 (751)
T 2xe4_A 498 VYHKDLD-MSQPQPCMLYGYGSYGLSM-DP----QFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFS 571 (751)
T ss_dssp EEETTSC-TTSCCCEEEECCCCTTCCC-CC----CCCGGGHHHHTTTCEEEEECCTTSCTTCTHHHHTTSSGGGTHHHHH
T ss_pred EcCCCCC-CCCCccEEEEECCCCCcCC-CC----cchHHHHHHHhCCcEEEEEeeCCCCCcCcchhhccccccccCccHH
Confidence 9998742 2257899999999877543 12 233346788899999999999999999988877 655555667799
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-----cccccc--ccCCCCCC
Q 004067 621 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-----TFYTEK--YMGLPSED 693 (776)
Q Consensus 621 D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~--~~~~~~~~ 693 (776)
|+.+++++|+++..+|.+||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+. ...... ..+.+ ..
T Consensus 572 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~p-~~ 650 (751)
T 2xe4_A 572 DFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNP-NE 650 (751)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHHHHTTTTCCT-TS
T ss_pred HHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchHHhhhcccCcccchhhHHHcCCC-CC
Confidence 99999999999988899999999999999999999999999999999999998875431 000001 12333 22
Q ss_pred cc---chhcCChhhhhccCCCc-EEEEecCCCCccChHHHHHHHHHHHHCC---CCeEEEEecCCCCCCCCCC-cHHHHH
Q 004067 694 PV---GYEYSSVMHHVHKMKGK-LLLVHGMIDENVHFRHTARLINALVAAR---KPYEILIFPDERHMPRRHR-DRIYME 765 (776)
Q Consensus 694 ~~---~~~~~~~~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~~---~~~~~~~~~~~~H~~~~~~-~~~~~~ 765 (776)
.+ .+...+|+..+.+++.| +|++||++|.+|++.++.+++++|++.+ ..+.+.++++++|.+.... ...+..
T Consensus 651 ~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 730 (751)
T 2xe4_A 651 YKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFSAKDRYKFWKES 730 (751)
T ss_dssp HHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSCTHHHHHHHHHHHHHCCSCCCEEEEEETTCCSSCCSSHHHHHHHH
T ss_pred HHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCcCChhHHHHHH
Confidence 22 34566888888899987 9999999999999999999999999884 4566777799999985432 445667
Q ss_pred HHHHHHHHHhC
Q 004067 766 ERIWEFIERTL 776 (776)
Q Consensus 766 ~~~~~fl~~~l 776 (776)
..+.+||.++|
T Consensus 731 ~~~~~Fl~~~l 741 (751)
T 2xe4_A 731 AIQQAFVCKHL 741 (751)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 78999999875
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-37 Score=343.83 Aligned_cols=522 Identities=14% Similarity=0.083 Sum_probs=351.8
Q ss_pred eCCCCCEEEEEECC------cEEEEecCCCceeEEeeCCCCCceecC-CcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 177 LSSDGTMIAFVRDC------ELHVLNLLINEQRQLTHGANGNTVTHG-LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 177 ~SpDg~~la~~~~~------~l~~~~l~~g~~~~lt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
+||||+++++.... .+.++|+++++... ++-. ....+ .-.| .++..++|- |.+.++|.+...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~---~~~~-~~~k~~~~~~------~~~~~~~W~-d~~~~~~~~~~~ 205 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK---NGFE-PITNSGKLLE------GKFTYPTWI-NKDTIIFNLVLH 205 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT---TCSC-CBCTTCCBCC------EETCCEEEE-ETTEEEECCCCS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC---CCcc-cccccccccc------cccceeeEE-CCCEEEEEeCCC
Confidence 89999999997542 48999999887531 1100 00000 0000 012345897 677777754322
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc--eEEEEcccCCCCCCCCcceEEEEEeccCCeE
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVNWMHGNIL 327 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~ 327 (776)
.. . +. ++.-..+++.|-+-+.. -..+-.. ... .....+.-++|++.
T Consensus 206 ~~-~---~~---------------------~~~~~~~v~~~~~Gt~~~~~~~v~~~------~~~-~~~~~~~~~~~~~~ 253 (711)
T 4hvt_A 206 KN-E---IT---------------------SSLYPNSLYIWKRGESIEKAKKLFEV------PKE-YIYVSAGKLLSDTI 253 (711)
T ss_dssp TT-C---BC---------------------TTSSBCEEEEEETTSCGGGCEEEEEC------CTT-SCEEEEEESSCTTT
T ss_pred CC-C---cC---------------------cCCCCCEEEEEECCCChHHCeEEecc------CCC-ceEEEEEEecCCCc
Confidence 11 0 00 00011456777766543 2222111 111 22344667888773
Q ss_pred ----EEEEEeecCceEEEEEEECCC--CceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC--------Cce
Q 004067 328 ----TAQVLNRSQTKLKVLKFDIKT--GQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT--------GFR 393 (776)
Q Consensus 328 ----l~~~~~~~~~~~~l~~~d~~~--g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--------g~~ 393 (776)
+++....+.....+|+.|++. ++...|....+.... ...++.+++....+ ...
T Consensus 254 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (711)
T 4hvt_A 254 SSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDATLQ-------------GSFKEYVFWLLRSDWKFKSHNIKAG 320 (711)
T ss_dssp CSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCEEE-------------EEETTEEEEECSSCEEETTEEECTT
T ss_pred eEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcceEe-------------eeECCEEEEEECcccccccccCCCC
Confidence 444444344557899998764 554555222211100 11144555543221 234
Q ss_pred EEEEEeCCCc--------eeec-cccCC-eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCcccccee---
Q 004067 394 HLYLHDINGT--------CLGP-ITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK--- 460 (776)
Q Consensus 394 ~l~~~~~~g~--------~~~~-lt~~~-~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~--- 460 (776)
.|+.+++++. +.+. ++... ..+.++. |..+ .+++....++. ..|+.+++. +|. ...+.
T Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~--~l~~~~~~~~~--~~l~~~~~~-~g~---~~~~~~i~ 391 (711)
T 4hvt_A 321 SLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIS-TTKD--RVFLATYDNVV--AKVVTFTLE-NEQ---WTKPVVLK 391 (711)
T ss_dssp CEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEE-ECSS--CEEEEEEETTE--EEEEEECEE-TTE---ECCCEEEC
T ss_pred eEEEEECCcccccccccccceEEECCCCCCeEEEEE-EECC--EEEEEEEECCE--EEEEEEECC-CCc---eEEEeccC
Confidence 7999998763 2233 44443 3344443 5543 57777766653 567777663 231 01233
Q ss_pred ecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEE
Q 004067 461 LTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGA 540 (776)
Q Consensus 461 l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~ 540 (776)
++....+...+.+++++.+++..++..+|+++++++.. ++ .+++...+ ..++...+ ..+.+.+++.||.+++++
T Consensus 392 lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~-~~~l~~~~---~~~~~~~~-~~e~v~~~s~DG~~i~~~ 465 (711)
T 4hvt_A 392 LPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE-LKIIRKAL---YSFDSENY-VLEQKEATSFDGVKIPYF 465 (711)
T ss_dssp CCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC-EEEEECCS---SCCCGGGE-EEEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc-EEEEecCC---cccCcccC-eeEEEEEECCCCeEEEEE
Confidence 33222345567889999999999999999999999986 54 35555432 24555555 688999999999999999
Q ss_pred EEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhh-HHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccH
Q 004067 541 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDA 619 (776)
Q Consensus 541 ~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~ 619 (776)
++.|++. ...++.|+||++|||++... ...| .... +.|+++||+|+++|+||+|++|..|........+...+
T Consensus 466 l~~P~~~-~~~~~~P~vl~~HGG~~~~~-~~~~----~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~ 539 (711)
T 4hvt_A 466 LVYKKGI-KFDGKNPTLLEAYGGFQVIN-APYF----SRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAF 539 (711)
T ss_dssp EEEETTC-CCSSCCCEEEECCCCTTCCC-CCCC----CHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHH
T ss_pred EEecCCC-CCCCCccEEEEECCCCCCCC-CCcc----cHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcH
Confidence 9999875 22368899999999977654 1222 2222 57889999999999999999999998877777777789
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc-----ccccccCCCCC--
Q 004067 620 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-----YTEKYMGLPSE-- 692 (776)
Q Consensus 620 ~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~-- 692 (776)
+|+.+++++|+++..+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+... +...+ +.|..
T Consensus 540 ~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~~~~-G~p~~~~ 618 (711)
T 4hvt_A 540 NDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEY-GDPEIPN 618 (711)
T ss_dssp HHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHH-CCTTSHH
T ss_pred HHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHHHHh-CCCcCHH
Confidence 99999999999999899999999999999999999999999999999999999998654321 11222 44432
Q ss_pred CccchhcCChhhhhccCCC--cEEEEecCCCCccChHHHHHHHHHH-HHCCCCeEEEEecCCCCCCCC-CCcHHHHHHHH
Q 004067 693 DPVGYEYSSVMHHVHKMKG--KLLLVHGMIDENVHFRHTARLINAL-VAARKPYEILIFPDERHMPRR-HRDRIYMEERI 768 (776)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~--P~lii~G~~D~~v~~~~~~~~~~~l-~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~ 768 (776)
....+...+|+.++.++++ |+|++||.+|.+||+.++.+++++| ++.+.+++++++++++|.+.. ..........+
T Consensus 619 ~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i 698 (711)
T 4hvt_A 619 DLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINL 698 (711)
T ss_dssp HHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCTTCCEEEEEESSCCSSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCChHHHHHHHHHHHHHcCCCEEEEEECCCCCcCcCCcchHHHHHHHH
Confidence 1234567799999999886 9999999999999999999999999 999999999999999999743 33456777888
Q ss_pred HHHHHHhC
Q 004067 769 WEFIERTL 776 (776)
Q Consensus 769 ~~fl~~~l 776 (776)
.+||.++|
T Consensus 699 ~~FL~~~L 706 (711)
T 4hvt_A 699 YTFFANAL 706 (711)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999874
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=244.83 Aligned_cols=299 Identities=13% Similarity=0.056 Sum_probs=208.8
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
.+++|||||++|+|.+..++ ..+||++|+++++.++++.... ..+..+.|||
T Consensus 39 ~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~~~-----------------------~~~~~~~~sp--- 90 (388)
T 3pe7_A 39 YQKCFTRDGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEGRG-----------------------DNTFGGFLSP--- 90 (388)
T ss_dssp TSCCBCTTSCEEEEEECTTS--SCEEEEEETTTCEEEECCCSSC-----------------------BCSSSCEECT---
T ss_pred cCccCCCCCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeCCC-----------------------CCccceEEcC---
Confidence 56899999999999997544 3689999999999999986322 1233568999
Q ss_pred CceEEEEeC-CCcEEEEeCCCCccceecCCCCCCCccC--ceeCCCCCEEEEEE-----------------------CCc
Q 004067 138 KKKIIMVPL-PDGIYFQDLSCSKPELKLSSSSCSPVID--PHLSSDGTMIAFVR-----------------------DCE 191 (776)
Q Consensus 138 dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~~--~~~SpDg~~la~~~-----------------------~~~ 191 (776)
||++|+|.. +..||+||+++++.+ .+...+...... ..++|||+.++... ..+
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEEN-VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEE-EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcce-eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 999999985 558999999999887 554443322222 23499999998653 146
Q ss_pred EEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 192 LHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 192 l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
||++++++|+.++++..... +..+.||| ||++|+|.......
T Consensus 170 l~~~d~~~g~~~~l~~~~~~------------------~~~~~~sp~dg~~l~~~~~~~~~------------------- 212 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQENQW------------------LGHPIYRPYDDSTVAFCHEGPHD------------------- 212 (388)
T ss_dssp EEEEETTTCCEEEEEEESSC------------------EEEEEEETTEEEEEEEEECSCTT-------------------
T ss_pred EEEEECCCCceEEeecCCcc------------------ccccEECCCCCCEEEEEEecCCC-------------------
Confidence 99999999999888764431 34678999 99999998742110
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCc-eEEEEEEECCCC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQT-KLKVLKFDIKTG 349 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~l~~~d~~~g 349 (776)
.....|+++|+++++.+.+... .....+..+.|||||+.|++.+.+... ...|++||+++|
T Consensus 213 -----------~~~~~l~~~d~~~~~~~~l~~~-------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 213 -----------LVDARMWLINEDGTNMRKVKTH-------AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp -----------TSSCSEEEEETTSCCCEESCCC-------CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred -----------CCcceEEEEeCCCCceEEeeeC-------CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 0114589999998887776321 111357789999999988877765433 357999999999
Q ss_pred ceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc------CCceEEEEEeCCCceeeccccCCe----------
Q 004067 350 QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK------TGFRHLYLHDINGTCLGPITEGDW---------- 413 (776)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------~g~~~l~~~~~~g~~~~~lt~~~~---------- 413 (776)
+.+.++......... ..+.+..++.++..+++.... .+...||+|++++++.++|+.+..
T Consensus 275 ~~~~l~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 275 ENRQLTSMPACSHLM----SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQ 350 (388)
T ss_dssp CEEEEEEECCEEEEE----ECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSS
T ss_pred ceEEEEcCCCceeee----ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccc
Confidence 988887643310000 001111113344556665533 566799999999999988887653
Q ss_pred -EEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 414 -MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 414 -~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.+.. +.|||||++|+|.+...+. .+||.+++
T Consensus 351 ~~~~~-~~~spDg~~l~~~s~~~g~--~~l~~~~l 382 (388)
T 3pe7_A 351 VTHPH-PSFTPDDKQILFTSDVHGK--PALYLATL 382 (388)
T ss_dssp TTCCC-CEECTTSSEEEEEECTTSS--CEEEEEEC
T ss_pred cCCCC-ccCCCCCCEEEEEecCCCc--eeEEEEEC
Confidence 2333 3599999999999877654 68999998
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=250.57 Aligned_cols=296 Identities=11% Similarity=0.019 Sum_probs=203.7
Q ss_pred CceeEcCCCCEEEEEeCCCC----cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 58 TSIGFSPDDNLITYLLSPDH----SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~----~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
.+++|||||++|+|.+.... ....++|+||+++++.++|+.+. ..+..+.||
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~------------------------~~~~~~~~S 120 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIP------------------------NNTQWVTWS 120 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------------------------TTEEEEEEC
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCC------------------------CcceeeEEC
Confidence 44899999999999886321 11258999999999988877532 257889999
Q ss_pred ecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCC------------------CccCceeCCCCCEEEEEECC-----
Q 004067 134 KTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCS------------------PVIDPHLSSDGTMIAFVRDC----- 190 (776)
Q Consensus 134 p~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~------------------~~~~~~~SpDg~~la~~~~~----- 190 (776)
| ||++|+|..+++||++|+.+++.+ ++|..... ....+.|||||++|||.+.+
T Consensus 121 P---dG~~la~~~~~~i~~~~~~~~~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 121 P---VGHKLAYVWNNDIYVKIEPNLPSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp S---STTCEEEEETTEEEEESSTTSCCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred C---CCCEEEEEECCeEEEEECCCCceE-EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 9 999999999999999999999988 77653321 11348899999999998621
Q ss_pred --------------------------------cEEEEecCC---C---ceeEEeeCCCCCceecCCcccceecccCCcce
Q 004067 191 --------------------------------ELHVLNLLI---N---EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTG 232 (776)
Q Consensus 191 --------------------------------~l~~~~l~~---g---~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (776)
.|+++++++ | +.+++..... ..+... .+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~----~~~~~~--------~~~~ 264 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS----MLIGDH--------YLCD 264 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH----HHTSCE--------EEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc----CCCCCe--------EEEE
Confidence 378888888 7 5555542110 000001 1346
Q ss_pred EEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc-------eEEEEcccC
Q 004067 233 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP-------VSWMDLQCG 305 (776)
Q Consensus 233 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~-------~~~l~~~~~ 305 (776)
++|||||+.+++...... ....|+++|+++|+ ..++...
T Consensus 265 ~~wspdg~~~~~~~~r~~--------------------------------~~~~i~~~d~~tg~~~~~~~~~~~l~~~-- 310 (740)
T 4a5s_A 265 VTWATQERISLQWLRRIQ--------------------------------NYSVMDICDYDESSGRWNCLVARQHIEM-- 310 (740)
T ss_dssp EEEEETTEEEEEEEESST--------------------------------TEEEEEEEEEETTTTEEEECGGGCEEEE--
T ss_pred EEEeCCCeEEEEEeCCCC--------------------------------CEEEEEEEECCCCccccceeEEEEeeec--
Confidence 889999998777654321 12568999999987 2222111
Q ss_pred CCCCCCCcce-----EEEEEeccCCeEEE-EEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCcccc
Q 004067 306 GTDQNYDEEY-----LARVNWMHGNILTA-QVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKY 379 (776)
Q Consensus 306 ~~~~~~~~~~-----~~~~~~SpDg~~l~-~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (776)
.+... ...+.|||||+.++ +.+.++ +..+||++|+++++.++|+... |.... .+ .++
T Consensus 311 -----~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~-G~~~l~~~~~~~~~~~~lT~g~---~~v~~-~~-------~~d 373 (740)
T 4a5s_A 311 -----STTGWVGRFRPSEPHFTLDGNSFYKIISNEE-GYRHICYFQIDKKDCTFITKGT---WEVIG-IE-------ALT 373 (740)
T ss_dssp -----CSSSCSSSSSCCCCEECTTSSEEEEEEECTT-SCEEEEEEETTCSSCEESCCSS---SCEEE-EE-------EEC
T ss_pred -----cCCceEccCcCCCceEcCCCCEEEEEEEcCC-CceEEEEEECCCCceEecccCC---EEEEE-EE-------EEe
Confidence 11112 23689999999877 555444 6789999999999999988653 22110 01 345
Q ss_pred CCeEEEEecc----CCceEEEEEeCCCceee-ccccC----CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 380 SGGFIWASEK----TGFRHLYLHDINGTCLG-PITEG----DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 380 ~~~~~~~s~~----~g~~~l~~~~~~g~~~~-~lt~~----~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
++.++|.+.. .+..+||.+++++++.+ +||.. ......+ .||+||+++++.....++ ..++.+++
T Consensus 374 ~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~-~~S~dg~~~~~~~s~~~~--p~~~l~~~ 447 (740)
T 4a5s_A 374 SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSV-SFSKEAKYYQLRCSGPGL--PLYTLHSS 447 (740)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEE-EECTTSSEEEEEECSBSS--CEEEEEET
T ss_pred CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEE-EECCCCCEEEEEeCCCCC--CEEEEEEC
Confidence 6678998876 56789999999988765 77742 1223333 499999998888766545 35666665
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-24 Score=226.97 Aligned_cols=344 Identities=10% Similarity=0.072 Sum_probs=222.2
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEeCC--C--cEEEEeCC
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLP--D--GIYFQDLS 156 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~--~--~l~~~d~~ 156 (776)
.++|+-...+++.++++.+... ....-+..+.||| ||++|+|..+ + +||++|++
T Consensus 11 ~~~~~~~~~g~~~~~lt~~~~~-------------------~~~~~~~~~~~Sp---Dg~~l~~~~~~~g~~~l~~~d~~ 68 (388)
T 3pe7_A 11 FDTYQDASTGAQVTRLTPPDVT-------------------CHRNYFYQKCFTR---DGSKLLFGGAFDGPWNYYLLDLN 68 (388)
T ss_dssp CEEEECTTTCCEEEECSCTTSC-------------------EECCCTTSCCBCT---TSCEEEEEECTTSSCEEEEEETT
T ss_pred ceEEecCCCCcceEEecCCccc-------------------ccchhhcCccCCC---CCCEEEEEEcCCCCceEEEEeCC
Confidence 4688755556677888864320 0000112378999 9999999844 3 49999999
Q ss_pred CCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEE
Q 004067 157 CSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWW 235 (776)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 235 (776)
+++.+ +++.........+.|||||+.|+|...+ .||++++++|+.+++...+.. +.. .....+
T Consensus 69 ~g~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~---------~~~------~~~~~~ 132 (388)
T 3pe7_A 69 TQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE---------WVG------YGTWVA 132 (388)
T ss_dssp TCEEE-ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---------EEE------EEEEEE
T ss_pred CCceE-EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh---------ccc------ccceeE
Confidence 99998 8877665434478999999999999964 799999999998888765432 000 012335
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcce
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEY 315 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 315 (776)
+|||+.|+....+...... ......|...........|+++|+++++.+.+.. ....
T Consensus 133 ~~dg~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---------~~~~ 189 (388)
T 3pe7_A 133 NSDCTKLVGIEIRREDWVP--------------LTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ---------ENQW 189 (388)
T ss_dssp CTTSSEEEEEEEEGGGCCC--------------CCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE---------ESSC
T ss_pred CCCCCeeccccccCccccc--------------ccccchhhhhhccCCcceEEEEECCCCceEEeec---------CCcc
Confidence 9999998875532211000 0000000000001123679999999999888743 3345
Q ss_pred EEEEEecc-CCeEEEEEEeecC--ceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCc
Q 004067 316 LARVNWMH-GNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF 392 (776)
Q Consensus 316 ~~~~~~Sp-Dg~~l~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~ 392 (776)
+..+.||| ||+.|++...... ....|+++|++++..+.++......+. ....|+| ++..++|.+...+.
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-~~~~~sp-------dg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC-THEFWVP-------DGSALVYVSYLKGS 261 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE-EEEEECT-------TSSCEEEEEEETTC
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc-ccceECC-------CCCEEEEEecCCCC
Confidence 78899999 9998888876432 245799999999888887764422121 1223433 34558888877665
Q ss_pred e--EEEEEeCCCceeeccccCCeEEEE-E----EeecCCCcEEEEEEccC----CCceeeEEEEEeCCCCCCccccceee
Q 004067 393 R--HLYLHDINGTCLGPITEGDWMVEQ-I----VGVNEASGQVYFTGTLD----GPLESHLYCAKLYPDWNHTLEAPVKL 461 (776)
Q Consensus 393 ~--~l~~~~~~g~~~~~lt~~~~~~~~-~----~~~s~dg~~i~~~~~~~----~~~~~~l~~~~~~~~g~~~~~~~~~l 461 (776)
. .||+||+++++.++++........ . ..|||||+.|++..... ......||.+++ .+. ..++|
T Consensus 262 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~--~~~----~~~~l 335 (388)
T 3pe7_A 262 PDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM--KNG----TQHRV 335 (388)
T ss_dssp CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET--TTT----EEEEE
T ss_pred CcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec--cCC----ceEEe
Confidence 4 499999999988777654321110 0 14899999999876431 012357999998 343 56677
Q ss_pred cCCCC------------eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 462 TNGKG------------KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 462 ~~~~~------------~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
+.... +..++|||||++|++..... ..++||++++.++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 336 ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-GKPALYLATLPES 385 (388)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCGG
T ss_pred ccccCcccccccccccCCCCccCCCCCCEEEEEecCC-CceeEEEEECChh
Confidence 76554 45679999999999987654 4578999998654
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-24 Score=210.72 Aligned_cols=223 Identities=15% Similarity=0.138 Sum_probs=172.4
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+.+++ +|..+.++++.|++.. ++.|+||++||..+... .+..+++.|+++||.|+++|+||+|++
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~~p~~~~---~~~p~vv~~HG~~g~~~-------~~~~~~~~l~~~G~~v~~~d~~g~g~~ 73 (241)
T 3f67_A 5 IAGETSIPS-QGENMPAYHARPKNAD---GPLPIVIVVQEIFGVHE-------HIRDLCRRLAQEGYLAIAPELYFRQGD 73 (241)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEETTCC---SCEEEEEEECCTTCSCH-------HHHHHHHHHHHTTCEEEEECTTTTTCC
T ss_pred eeeeEEEec-CCcceEEEEecCCCCC---CCCCEEEEEcCcCccCH-------HHHHHHHHHHHCCcEEEEecccccCCC
Confidence 456788888 8889999999998642 46899999999665432 345567889999999999999999776
Q ss_pred chhhhhhhh-------hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 603 GLKFEASIK-------HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 603 ~~~~~~~~~-------~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
...+..... ........+|+.++++++.++. +|.++|+++||||||.+++.++.++|+ +.++++..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~- 150 (241)
T 3f67_A 74 PNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLV- 150 (241)
T ss_dssp GGGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCS-
T ss_pred CCchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEecccc-
Confidence 544321110 0001123778999999998876 788999999999999999999999988 566666544321
Q ss_pred ccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 676 DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
.....+...++...+.++++|+|+++|++|..+++..+..+++.+.+.+.+++++++++++|.+
T Consensus 151 ----------------~~~~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 214 (241)
T 3f67_A 151 ----------------GEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHAF 214 (241)
T ss_dssp ----------------CCCCSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEETTCCTTT
T ss_pred ----------------CCCccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCcce
Confidence 0112233456777888999999999999999999999999999999999999999999999988
Q ss_pred CC-------CCcHHHHHHHHHHHHHHh
Q 004067 756 RR-------HRDRIYMEERIWEFIERT 775 (776)
Q Consensus 756 ~~-------~~~~~~~~~~~~~fl~~~ 775 (776)
.. .....+.++.+.+||++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 215 NADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp TCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 42 233577889999999864
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=225.48 Aligned_cols=324 Identities=15% Similarity=0.104 Sum_probs=219.2
Q ss_pred CCceeEcCCCCEEEEEeC----CCCcCcceEEEEec--CCCceE---EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 004067 57 PTSIGFSPDDNLITYLLS----PDHSLSRKVFSFDP--KTCKQE---LVFSPPDGGLDENNISPEEKLRRERLRERGLGV 127 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~----~~~~~~~~l~~~~~--~~~~~~---~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (776)
+....|+++|..+.-... .+|.....|++||+ .+++.. .+..+.. .+..-........-....+.
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQ------WLRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGG------GHHHHHHHHHHHHHHHHHSS
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChh------HHHHHHHHHHHHHHHHHcCC
Confidence 466789999986653322 23322347999999 877642 2332111 00000000000000000111
Q ss_pred eeEEEeecCCCceEEEEeCC-------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEe
Q 004067 128 TRYEWVKTSSKKKIIMVPLP-------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLN 196 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~~-------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~ 196 (776)
. .+ .+.+|+|... +.|++||++++..+ .++.... .+..++|||||++|+|.+.. .|++++
T Consensus 139 ~----~~---~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~-~l~~~~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d 209 (415)
T 2hqs_A 139 K----GA---FRTRIAYVVQTNGGQFPYELRVSDYDGYNQF-VVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQT 209 (415)
T ss_dssp C----CC---TTCEEEEEEECSSSSCCEEEEEEETTSCSCE-EEEEESS-CEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred C----Cc---CCCEEEEEEecCCCCccceEEEEcCCCCCCE-EEeCCCC-cceeeEEcCCCCEEEEEEecCCCcEEEEEE
Confidence 1 13 5777877632 68999999988777 7765543 48889999999999999864 799999
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+++|+.++++..... +..++|||||+.|+|.....+
T Consensus 210 ~~tg~~~~l~~~~~~------------------~~~~~~spdg~~la~~~~~~g-------------------------- 245 (415)
T 2hqs_A 210 LANGAVRQVASFPRH------------------NGAPAFSPDGSKLAFALSKTG-------------------------- 245 (415)
T ss_dssp TTTCCEEEEECCSSC------------------EEEEEECTTSSEEEEEECTTS--------------------------
T ss_pred CCCCcEEEeecCCCc------------------ccCEEEcCCCCEEEEEEecCC--------------------------
Confidence 999998877643321 447889999999998764221
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
...|++||+++++...+ ..+...+..++|||||+.|++.+.++ ....||+||+++++.+.++.
T Consensus 246 -------~~~i~~~d~~~~~~~~l---------~~~~~~~~~~~~spdg~~l~~~s~~~-g~~~i~~~d~~~~~~~~l~~ 308 (415)
T 2hqs_A 246 -------SLNLYVMDLASGQIRQV---------TDGRSNNTEPTWFPDSQNLAFTSDQA-GRPQVYKVNINGGAPQRITW 308 (415)
T ss_dssp -------SCEEEEEETTTCCEEEC---------CCCSSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTSSCCEECCC
T ss_pred -------CceEEEEECCCCCEEeC---------cCCCCcccceEECCCCCEEEEEECCC-CCcEEEEEECCCCCEEEEec
Confidence 15689999999988766 44556788999999999888887544 34579999999998777654
Q ss_pred eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 357 EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
+.. +. ....|+| ++..+++.+..+|...|++|++++++.+.++.+. .+..+ .|+|||+.|++.+...+
T Consensus 309 ~~~--~~-~~~~~sp-------dG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~-~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 309 EGS--QN-QDADVSS-------DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETP-SLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp SSS--EE-EEEEECT-------TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEE-EECTTSSEEEEEEEETT
T ss_pred CCC--cc-cCeEECC-------CCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCe-EEcCCCCEEEEEEcCCC
Confidence 322 11 1122333 3444677776667789999999999888888764 44444 59999999999887654
Q ss_pred CceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCc
Q 004067 437 PLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNM 476 (776)
Q Consensus 437 ~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg 476 (776)
...||.+++ +|. ..++|+.+.+ +..++|||..
T Consensus 377 --~~~l~~~d~--~g~----~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 377 --GSVLNLVST--DGR----FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp --EEEEEEEET--TSC----CEEECCCSSSEEEEEEECCCC
T ss_pred --ccEEEEEEC--CCC----cEEEeeCCCCCCcCCcccccc
Confidence 368999998 454 6778887754 6788999964
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=218.68 Aligned_cols=260 Identities=18% Similarity=0.187 Sum_probs=198.6
Q ss_pred CCCCEEEEEeCCCCc-CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEE
Q 004067 64 PDDNLITYLLSPDHS-LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKII 142 (776)
Q Consensus 64 pDG~~ia~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l 142 (776)
+++++|+|.+...+. ....|++||+++++.+.++.+. ..+..+.||| ||++|
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~------------------------~~v~~~~~Sp---dg~~l 193 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP------------------------QPLMSPAWSP---DGSKL 193 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES------------------------SCEEEEEECT---TSSEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC------------------------CcceeeEEcC---CCCEE
Confidence 458899999875321 1268999999998888888643 3688999999 99999
Q ss_pred EEeCC----CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCce
Q 004067 143 MVPLP----DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 143 ~~~~~----~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
++... ..|++||+.+++.+ .++.... .+..++|||||++|+|+.. .+||++++.+++.++++.....
T Consensus 194 a~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~--- 268 (415)
T 2hqs_A 194 AYVTFESGRSALVIQTLANGAVR-QVASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN--- 268 (415)
T ss_dssp EEEECTTSSCEEEEEETTTCCEE-EEECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC---
T ss_pred EEEEecCCCcEEEEEECCCCcEE-EeecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCc---
Confidence 99843 38999999999887 6765544 4788999999999999874 3599999999988777654321
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+..++|||||+.|+|.+.+.+ ..+|++||+++
T Consensus 269 ---------------~~~~~~spdg~~l~~~s~~~g---------------------------------~~~i~~~d~~~ 300 (415)
T 2hqs_A 269 ---------------NTEPTWFPDSQNLAFTSDQAG---------------------------------RPQVYKVNING 300 (415)
T ss_dssp ---------------EEEEEECTTSSEEEEEECTTS---------------------------------SCEEEEEETTS
T ss_pred ---------------ccceEECCCCCEEEEEECCCC---------------------------------CcEEEEEECCC
Confidence 346889999999999874321 14689999999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
++...+ ......+..++|||||+.|++..... ....|++||+++++.+.++.+. .. ....|+|
T Consensus 301 ~~~~~l---------~~~~~~~~~~~~spdG~~l~~~~~~~-g~~~i~~~d~~~~~~~~l~~~~-~~---~~~~~sp--- 363 (415)
T 2hqs_A 301 GAPQRI---------TWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLSSTF-LD---ETPSLAP--- 363 (415)
T ss_dssp SCCEEC---------CCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEEECCCSS-SC---EEEEECT---
T ss_pred CCEEEE---------ecCCCcccCeEECCCCCEEEEEECcC-CceEEEEEECCCCCEEEecCCC-Cc---CCeEEcC---
Confidence 987666 33455788899999999888876543 3578999999999987765442 11 1122333
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCC
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEAS 425 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg 425 (776)
++..+++.+...+...||+|+++++..++|+.+...+..+. |+|.-
T Consensus 364 ----dg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~-~~~~~ 409 (415)
T 2hqs_A 364 ----NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPA-WSPYL 409 (415)
T ss_dssp ----TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEE-ECCCC
T ss_pred ----CCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCc-ccccc
Confidence 34447777777777899999999999999999888888775 88853
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=208.22 Aligned_cols=230 Identities=19% Similarity=0.217 Sum_probs=163.9
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchh
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 605 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~ 605 (776)
.+++.. +|.+++++++.|+... ++.|+||++||.+++.. ...|..+++.|+++||.|+++|+||+|.|...
T Consensus 3 ~~~~~~-~g~~l~~~~~~p~~~~---~~~p~vvl~HG~~~~~~-----~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 73 (251)
T 2wtm_A 3 AMYIDC-DGIKLNAYLDMPKNNP---EKCPLCIIIHGFTGHSE-----ERHIVAVQETLNEIGVATLRADMYGHGKSDGK 73 (251)
T ss_dssp EEEEEE-TTEEEEEEEECCTTCC---SSEEEEEEECCTTCCTT-----SHHHHHHHHHHHHTTCEEEEECCTTSTTSSSC
T ss_pred ceEEec-CCcEEEEEEEccCCCC---CCCCEEEEEcCCCcccc-----cccHHHHHHHHHHCCCEEEEecCCCCCCCCCc
Confidence 345654 8889999999987521 36789999999776521 11345567889999999999999999988643
Q ss_pred hhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-cc-ccc
Q 004067 606 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-DT-FYT 683 (776)
Q Consensus 606 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-~~-~~~ 683 (776)
....... ...+|+.++++++.+...+ ++++++||||||.+++.++.++|++++++|+.+|....... .. ...
T Consensus 74 ~~~~~~~----~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 147 (251)
T 2wtm_A 74 FEDHTLF----KWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELL 147 (251)
T ss_dssp GGGCCHH----HHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEET
T ss_pred cccCCHH----HHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhc
Confidence 2211111 1256788888888665433 49999999999999999999999999999999987542110 00 000
Q ss_pred c-cc--cCCCC-----CC----c---cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEe
Q 004067 684 E-KY--MGLPS-----ED----P---VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 748 (776)
Q Consensus 684 ~-~~--~~~~~-----~~----~---~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 748 (776)
. .+ ...+. .. . ......+....+.++++|+|+++|++|..+|+..+..+.+.+ .+.+++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~----~~~~~~~~ 223 (251)
T 2wtm_A 148 GLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQY----KNCKLVTI 223 (251)
T ss_dssp TEECBTTBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHS----SSEEEEEE
T ss_pred cccCCchhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhC----CCcEEEEE
Confidence 0 00 00000 00 0 001122344567788999999999999999999888887765 47899999
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 749 PDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 749 ~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++++|.+ .+.++++.+.+.+||++++
T Consensus 224 ~~~gH~~--~~~~~~~~~~i~~fl~~~~ 249 (251)
T 2wtm_A 224 PGDTHCY--DHHLELVTEAVKEFMLEQI 249 (251)
T ss_dssp TTCCTTC--TTTHHHHHHHHHHHHHHHH
T ss_pred CCCCccc--chhHHHHHHHHHHHHHHhc
Confidence 9999988 6788999999999998764
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=207.50 Aligned_cols=206 Identities=16% Similarity=0.194 Sum_probs=141.4
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.||.+|++++|.|++. .+.|+||++||+++... ...+...++.|+++||+|+++|+||+|.++........
T Consensus 38 ~dG~~i~g~l~~P~~~----~~~p~Vl~~HG~g~~~~-----~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~~~~ 108 (259)
T 4ao6_A 38 VDGRTVPGVYWSPAEG----SSDRLVLLGHGGTTHKK-----VEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREP 108 (259)
T ss_dssp ETTEEEEEEEEEESSS----CCSEEEEEEC-------------CHHHHHHHHHHHTTEEEEEECCCC-------------
T ss_pred eCCeEEEEEEEeCCCC----CCCCEEEEeCCCccccc-----chHHHHHHHHHHHCCCeEEeeccCCCCCCCCccccccc
Confidence 5999999999999774 46799999999876532 12344568899999999999999999977543221110
Q ss_pred hcc---------------CCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 612 HNC---------------GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 612 ~~~---------------~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
... ....+.|..++++++... +|.++|+++|+||||++++.+++..|++ +++++..+....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pri-~Aav~~~~~~~~- 184 (259)
T 4ao6_A 109 TDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKRI-KVALLGLMGVEG- 184 (259)
T ss_dssp CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTTE-EEEEEESCCTTS-
T ss_pred chhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCce-EEEEEecccccc-
Confidence 000 001245677777777654 4778999999999999999999998864 555554332110
Q ss_pred cccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC
Q 004067 677 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 756 (776)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 756 (776)
....++...+.++++|+|++||++|.++|++++.++++++. .....++++|+ +|..
T Consensus 185 --------------------~~~~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~--~~~k~l~~~~G-~H~~- 240 (259)
T 4ao6_A 185 --------------------VNGEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLG--TKQKTLHVNPG-KHSA- 240 (259)
T ss_dssp --------------------TTHHHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCC--CSSEEEEEESS-CTTC-
T ss_pred --------------------ccccchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEEEEeCC-CCCC-
Confidence 11223456788999999999999999999999999999883 34567889987 5533
Q ss_pred CCCcHHHHHHHHHHHHHHhC
Q 004067 757 RHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 757 ~~~~~~~~~~~~~~fl~~~l 776 (776)
....+..+.+.+||++||
T Consensus 241 --~p~~e~~~~~~~fl~~hL 258 (259)
T 4ao6_A 241 --VPTWEMFAGTVDYLDQRL 258 (259)
T ss_dssp --CCHHHHTHHHHHHHHHHC
T ss_pred --cCHHHHHHHHHHHHHHhc
Confidence 235677899999999997
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=200.73 Aligned_cols=211 Identities=16% Similarity=0.191 Sum_probs=164.7
Q ss_pred Cce--EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 523 PPD--IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 523 ~~~--~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
..| .+.+++.+| .+.++++.|.+ ++.|+||++||.++....... ..+..++..|+++||.|+++|+||+|
T Consensus 20 ~~e~~~~~~~~~~g-~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G 91 (249)
T 2i3d_A 20 QGHMPEVIFNGPAG-RLEGRYQPSKE-----KSAPIAIILHPHPQFGGTMNN--QIVYQLFYLFQKRGFTTLRFNFRSIG 91 (249)
T ss_dssp ----CEEEEEETTE-EEEEEEECCSS-----TTCCEEEEECCCGGGTCCTTS--HHHHHHHHHHHHTTCEEEEECCTTST
T ss_pred cCceeEEEEECCCc-eEEEEEEcCCC-----CCCCEEEEECCCcccCCCccc--hHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 455 899999888 89999998865 456999999996543221111 12345678899999999999999999
Q ss_pred CCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT 680 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~ 680 (776)
.+...+.. .....+|+.++++++.++.. +.++++++||||||.+++.++.++|+ ++++++.+|..+...
T Consensus 92 ~s~~~~~~------~~~~~~d~~~~i~~l~~~~~-~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--- 160 (249)
T 2i3d_A 92 RSQGEFDH------GAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD--- 160 (249)
T ss_dssp TCCSCCCS------SHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC---
T ss_pred CCCCCCCC------ccchHHHHHHHHHHHHHhCC-CCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh---
Confidence 87643321 11235889999999988753 66799999999999999999999998 899999988754210
Q ss_pred cccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHH-CCCCeEEEEecCCCCCCCCCC
Q 004067 681 FYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA-ARKPYEILIFPDERHMPRRHR 759 (776)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~ 759 (776)
...+.+++.|+|+++|+.|..+++..+.++++.+.+ .+.+++++++++++|.+. .
T Consensus 161 ----------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~~~--~ 216 (249)
T 2i3d_A 161 ----------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN--G 216 (249)
T ss_dssp ----------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--T
T ss_pred ----------------------hhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEECCCCcccc--c
Confidence 123456789999999999999999999999999865 345899999999999874 5
Q ss_pred cHHHHHHHHHHHHHHhC
Q 004067 760 DRIYMEERIWEFIERTL 776 (776)
Q Consensus 760 ~~~~~~~~~~~fl~~~l 776 (776)
...++.+.+.+||++++
T Consensus 217 ~~~~~~~~i~~fl~~~l 233 (249)
T 2i3d_A 217 KVDELMGECEDYLDRRL 233 (249)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 78899999999998763
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=218.99 Aligned_cols=293 Identities=12% Similarity=0.083 Sum_probs=201.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.+++|||||++|+|....++ ..+||++++++++.++++.... .....+.|||
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g--~~~l~~~d~~~~~~~~l~~~~~-----------------------~~~~~~~~sp-- 90 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDG--NRNYYLLNLETQQAVQLTEGKG-----------------------DNTFGGFIST-- 90 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTS--SCEEEEEETTTTEEEECCCSSC-----------------------BCTTTCEECT--
T ss_pred eecCcCCCCCCEEEEEEecCC--CceEEEEECCCCcEEEeecCCC-----------------------CccccceECC--
Confidence 378899999999999987643 3689999999999888875321 1122368999
Q ss_pred CCceEEEEeC-CCcEEEEeCCCCccceecCCCCCCCccC-------------------ceeCCCCCEEEEEE------CC
Q 004067 137 SKKKIIMVPL-PDGIYFQDLSCSKPELKLSSSSCSPVID-------------------PHLSSDGTMIAFVR------DC 190 (776)
Q Consensus 137 ~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~~-------------------~~~SpDg~~la~~~------~~ 190 (776)
||++|+|.. +.+||++|+.+++.+ .++..+...... +.|||||+.+++.. ..
T Consensus 91 -dg~~l~~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 91 -DERAFFYVKNELNLMKVDLETLEEQ-VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp -TSSEEEEEETTTEEEEEETTTCCEE-EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred -CCCEEEEEEcCCcEEEEECCCCCcE-EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 999999874 457999999999887 555433211111 46778887777653 23
Q ss_pred cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCC
Q 004067 191 ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEA 269 (776)
Q Consensus 191 ~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (776)
.||++++++|+.++++..... +..+.||| ||++|+|.+.+...
T Consensus 169 ~l~~~d~~~g~~~~~~~~~~~------------------~~~~~~sp~dg~~l~~~~~~~~~------------------ 212 (396)
T 3c5m_A 169 RLIKVDIETGELEVIHQDTAW------------------LGHPIYRPFDDSTVGFCHEGPHD------------------ 212 (396)
T ss_dssp EEEEEETTTCCEEEEEEESSC------------------EEEEEEETTEEEEEEEEECSCSS------------------
T ss_pred eEEEEECCCCcEEeeccCCcc------------------cccceECCCCCCEEEEEecCCCC------------------
Confidence 699999999998888743321 34678999 89999998732110
Q ss_pred cceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeec-CceEEEEEEECCC
Q 004067 270 QEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS-QTKLKVLKFDIKT 348 (776)
Q Consensus 270 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~l~~~d~~~ 348 (776)
.....|+++|+++++.+.+.. ......+..+.|||||+.|++..... .....|++||+++
T Consensus 213 ------------~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 213 ------------LVDARMWLVNEDGSNVRKIKE-------HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp ------------SCSCCCEEEETTSCCCEESSC-------CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred ------------CCCceEEEEECCCCceeEeec-------cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 011357999998887666521 01134577899999999887776553 2335699999999
Q ss_pred CceEEEEEeccCceeecccccccCCCCccccCCeEEEEec--------------cCCceEEEEEeCCCceeeccccCCeE
Q 004067 349 GQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE--------------KTGFRHLYLHDINGTCLGPITEGDWM 414 (776)
Q Consensus 349 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--------------~~g~~~l~~~~~~g~~~~~lt~~~~~ 414 (776)
++.+.+..... +. ..|+|. ++. +++.+. ..+...||+|++++++.++|+.....
T Consensus 274 g~~~~l~~~~~--~~---~~~s~~------dg~-~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 341 (396)
T 3c5m_A 274 LENEEVMVMPP--CS---HLMSNF------DGS-LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTS 341 (396)
T ss_dssp CCEEEEEECCS--EE---EEEECS------SSS-EEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCC
T ss_pred CCeEEeeeCCC--CC---CCccCC------CCc-eEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCc
Confidence 98887765321 21 223220 233 443321 13457999999999888888765431
Q ss_pred -----------EEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 415 -----------VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 415 -----------~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
... +.|++||+.|+|.+...+. .+||.++++
T Consensus 342 ~~~~~~~~~~~~~~-~~~s~dg~~l~~~s~~~~~--~~l~~~~~~ 383 (396)
T 3c5m_A 342 WDVLDGDRQITHPH-PSFTPNDDGVLFTSDFEGV--PAIYIADVP 383 (396)
T ss_dssp CCCBTTBSSTTCCC-CEECTTSSEEEEEECTTSS--CEEEEEECC
T ss_pred cccccccccCCCCC-ceEccCCCeEEEEecCCCC--ceEEEEEEc
Confidence 222 3599999999999876554 689999984
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=209.17 Aligned_cols=206 Identities=17% Similarity=0.200 Sum_probs=147.7
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..+.||++||.+++.. .|..+++.|+++||.|+++|+||||.|..+........ ..+|+.++++++.+.
T Consensus 50 ~~~~VlllHG~~~s~~-------~~~~la~~La~~Gy~Via~Dl~GhG~S~~~~~~~~~~~----~~~d~~~~~~~l~~~ 118 (281)
T 4fbl_A 50 SRIGVLVSHGFTGSPQ-------SMRFLAEGFARAGYTVATPRLTGHGTTPAEMAASTASD----WTADIVAAMRWLEER 118 (281)
T ss_dssp SSEEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEECCCTTSSSCHHHHHTCCHHH----HHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEECCCCCCCCCccccCCCHHH----HHHHHHHHHHHHHhC
Confidence 3467899999766543 35567899999999999999999998865433222222 267888888888764
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-------ccccccccCCCC------CCccchhc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-------TFYTEKYMGLPS------EDPVGYEY 699 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~ 699 (776)
. ++++|+||||||.+++.++.++|++++++|+.+|...+.... ............ .....+..
T Consensus 119 ~----~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (281)
T 4fbl_A 119 C----DVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPV 194 (281)
T ss_dssp C----SEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSE
T ss_pred C----CeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhcc
Confidence 3 589999999999999999999999999999998875432110 000000000000 00000000
Q ss_pred -------------CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHH
Q 004067 700 -------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEE 766 (776)
Q Consensus 700 -------------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~ 766 (776)
......++++++|+|+++|++|.++|++.+..+++.+. +.+++++++++++|.+.....++.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~--~~~~~l~~~~~~gH~~~~e~~~e~v~~ 272 (281)
T 4fbl_A 195 TPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIG--STEKELLWLENSYHVATLDNDKELILE 272 (281)
T ss_dssp EEGGGHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSCTHHHHHHHHHCC--CSSEEEEEESSCCSCGGGSTTHHHHHH
T ss_pred CchHHHHHHHHhhhhccccccccCCCEEEEEeCCCCCcCHHHHHHHHHhCC--CCCcEEEEECCCCCcCccccCHHHHHH
Confidence 00112467889999999999999999999999988773 457899999999998755556888999
Q ss_pred HHHHHHHHh
Q 004067 767 RIWEFIERT 775 (776)
Q Consensus 767 ~~~~fl~~~ 775 (776)
.+.+||++|
T Consensus 273 ~i~~FL~~H 281 (281)
T 4fbl_A 273 RSLAFIRKH 281 (281)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999999986
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=213.33 Aligned_cols=227 Identities=18% Similarity=0.190 Sum_probs=171.5
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+.+.++. +|.++.++++.|. +.|+||++||++++.. .+..++..|+++||.|+++|+||+|.+.
T Consensus 6 ~~~~~~~~-~g~~l~~~~~~p~-------~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~g~s~ 70 (290)
T 3ksr_A 6 LSSIEIPV-GQDELSGTLLTPT-------GMPGVLFVHGWGGSQH-------HSLVRAREAVGLGCICMTFDLRGHEGYA 70 (290)
T ss_dssp EEEEEEEE-TTEEEEEEEEEEE-------SEEEEEEECCTTCCTT-------TTHHHHHHHHTTTCEEECCCCTTSGGGG
T ss_pred eeeEEecC-CCeEEEEEEecCC-------CCcEEEEeCCCCCCcC-------cHHHHHHHHHHCCCEEEEeecCCCCCCC
Confidence 45677776 7889999999986 4599999999876543 3455688899999999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc----c
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----D 679 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~----~ 679 (776)
......... ...+|+.++++++.++..++.++++|+||||||++++.++.++| ++++++.+|....... .
T Consensus 71 ~~~~~~~~~----~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~~~~ 144 (290)
T 3ksr_A 71 SMRQSVTRA----QNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWDQPK 144 (290)
T ss_dssp GGTTTCBHH----HHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTTSBH
T ss_pred CCcccccHH----HHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhhccc
Confidence 543221111 23689999999999887788889999999999999999999988 6677777776542210 0
Q ss_pred ccc-----cccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 680 TFY-----TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 680 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
..+ ...+... ...+...+....+.++++|+|+++|+.|..+++..+..+++.+...+ +++++++++++|.
T Consensus 145 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~ 219 (290)
T 3ksr_A 145 VSLNADPDLMDYRRR----ALAPGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIAGADHA 219 (290)
T ss_dssp HHHHHSTTHHHHTTS----CCCGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEETTCCTT
T ss_pred ccccCChhhhhhhhh----hhhhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcCCCCCC
Confidence 000 0011111 11122334556678889999999999999999999999999886654 6899999999998
Q ss_pred CCCCCcHHHHHHHHHHHHHHhC
Q 004067 755 PRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 755 ~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+........+.+.+.+||++++
T Consensus 220 ~~~~~~~~~~~~~i~~fl~~~~ 241 (290)
T 3ksr_A 220 LSVKEHQQEYTRALIDWLTEMV 241 (290)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHh
Confidence 8666677889999999998763
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-22 Score=237.80 Aligned_cols=381 Identities=10% Similarity=-0.010 Sum_probs=245.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..|+||| ++|||.+. .+||+|++++++.++++.+.. .+..+.|||
T Consensus 17 ~~~~~~S~--~~iaf~~~------~~l~~~~~~gg~~~~lt~~~~------------------------~v~~~~~SP-- 62 (1045)
T 1k32_A 17 LLNPDIHG--DRIIFVCC------DDLWEHDLKSGSTRKIVSNLG------------------------VINNARFFP-- 62 (1045)
T ss_dssp CEEEEEET--TEEEEEET------TEEEEEETTTCCEEEEECSSS------------------------EEEEEEECT--
T ss_pred EeCcEEeC--CEEEEEEC------CcEEEEECCCCcEEEeeeCCC------------------------cccCeEECC--
Confidence 47899995 59999986 269999999999999997533 678999999
Q ss_pred CCceEEEEeCC-------CcEEEEeCCCCccceecCCCCCCCc-------cCceeCCCCCEEEEEECC--------cEEE
Q 004067 137 SKKKIIMVPLP-------DGIYFQDLSCSKPELKLSSSSCSPV-------IDPHLSSDGTMIAFVRDC--------ELHV 194 (776)
Q Consensus 137 ~dg~~l~~~~~-------~~l~~~d~~~~~~~~~l~~~~~~~~-------~~~~~SpDg~~la~~~~~--------~l~~ 194 (776)
||++|+|... .+||+||+.+++.+ +|+.+... + ..++|||||+ ++|++.. +||.
T Consensus 63 -DG~~la~~s~~~~~~~~~~i~~~d~~~g~~~-~lt~~~~~-~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~ 138 (1045)
T 1k32_A 63 -DGRKIAIRVMRGSSLNTADLYFYNGENGEIK-RITYFSGK-STGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYR 138 (1045)
T ss_dssp -TSSEEEEEEEESTTCCEEEEEEEETTTTEEE-ECCCCCEE-EETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEE
T ss_pred -CCCEEEEEEeeccCCCCCeEEEEECCCCCeE-EcccCCCc-ccccccccccccCCCCCE-EEEEECCcCCCcccceEEE
Confidence 9999999832 37999999999987 88776543 4 6899999999 8888763 4999
Q ss_pred EecCCCceeEEeeCCCCCce------ec-----------------CCccccee---------cccCCcceEEECCCCCeE
Q 004067 195 LNLLINEQRQLTHGANGNTV------TH-----------------GLAEYIAQ---------EEMDRKTGYWWSLDSKFI 242 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~------~~-----------------~~~~~~~~---------~~~~~~~~~~wspDg~~l 242 (776)
+++++|+.++++........ .. ...-|... ..-..+..+.|++| .+
T Consensus 139 ~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l 216 (1045)
T 1k32_A 139 VENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RI 216 (1045)
T ss_dssp EEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EE
T ss_pred EECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EE
Confidence 99999988877654221000 00 00001111 01123456788887 78
Q ss_pred EEEEecCCCCCeEEEeecCCCCCCC---CCcceecCCCCCCCCC---eEEEEEEEcCCCceEEEEcccCCC--CCCCCcc
Q 004067 243 AFTQVDSSEIPRFRIMHQGKSSVGS---EAQEDHAYPFAGASNV---KVRLGVVSAAGGPVSWMDLQCGGT--DQNYDEE 314 (776)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~---~~~l~~~d~~~~~~~~l~~~~~~~--~~~~~~~ 314 (776)
+|.+...+....+.+...+...... .......++.+|.... ...|++|++++++...+....... ....+..
T Consensus 217 ~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~ 296 (1045)
T 1k32_A 217 YFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIP 296 (1045)
T ss_dssp EEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECG
T ss_pred EEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccccccccccc
Confidence 8877655555556555433321100 1111223333333211 235888988666655332110000 0001123
Q ss_pred eEEEEEec-cCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCce
Q 004067 315 YLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR 393 (776)
Q Consensus 315 ~~~~~~~S-pDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 393 (776)
.+..++|| |||+.|++.. ...|+++++.++..+.+..+... .. ....| + ++..+++.++ ..
T Consensus 297 ~v~~~~~S~pdG~~la~~~-----~~~i~~~~~~~~~~~~~~~~~~~-~~-~~~~~-------s-dg~~l~~~s~---~~ 358 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-----RGQAFIQDVSGTYVLKVPEPLRI-RY-VRRGG-------D-TKVAFIHGTR---EG 358 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-----TTEEEEECTTSSBEEECSCCSCE-EE-EEECS-------S-SEEEEEEEET---TE
T ss_pred ccceeeecCCCCCEEEEEE-----cCEEEEEcCCCCceEEccCCCcc-eE-EeeeE-------c-CCCeEEEEEC---CC
Confidence 46789999 9999888776 23699999998887765433220 00 00111 3 3445777666 34
Q ss_pred EEE-EEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec-CCCC-eEEE
Q 004067 394 HLY-LHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-NGKG-KHVA 470 (776)
Q Consensus 394 ~l~-~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~-~~~~-~~~~ 470 (776)
+|| ++++++++.++++.+...+..+ .|||||++|++.+.. ..|+.+++. .| ..+.+. .+.+ +..+
T Consensus 359 ~l~~~~d~~~~~~~~l~~~~~~~~~~-~~SpDG~~la~~~~~-----~~v~~~d~~-tg-----~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 359 DFLGIYDYRTGKAEKFEENLGNVFAM-GVDRNGKFAVVANDR-----FEIMTVDLE-TG-----KPTVIERSREAMITDF 426 (1045)
T ss_dssp EEEEEEETTTCCEEECCCCCCSEEEE-EECTTSSEEEEEETT-----SEEEEEETT-TC-----CEEEEEECSSSCCCCE
T ss_pred ceEEEEECCCCCceEecCCccceeee-EECCCCCEEEEECCC-----CeEEEEECC-CC-----ceEEeccCCCCCccce
Confidence 899 9999999888888544555554 499999999887654 256667763 23 344444 3333 4678
Q ss_pred EEcCCcCEEEEEeeCC------CCCCEEEEEEcCCCceeEeecc
Q 004067 471 VLDHNMRNFVDFHDSL------DSPPRILLCSLQDGSLVLPLYE 508 (776)
Q Consensus 471 ~~spdg~~l~~~~~~~------~~~~~i~~~~~~~~~~~~~l~~ 508 (776)
+|||||++|++..... .....|+++|..+++ .+.++.
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~ 469 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT 469 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC
Confidence 9999999999987653 345689999998776 455543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=213.19 Aligned_cols=306 Identities=12% Similarity=0.113 Sum_probs=203.0
Q ss_pred eeeEEEeecCCCceEEEEeCC----CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCc
Q 004067 127 VTRYEWVKTSSKKKIIMVPLP----DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINE 201 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~----~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~ 201 (776)
+..+.||| ||++|+|..+ ..||++|+++++.+ .++.........+.|||||++|+|++.. +||++++++++
T Consensus 38 ~~~~~~Sp---dG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQ---DGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCT---TSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eecCcCCC---CCCEEEEEEecCCCceEEEEECCCCcEE-EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 45678999 9999999843 37999999999988 7776543323348999999999999875 59999999999
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC-
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA- 280 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 280 (776)
.++++..+.. |+|||+.|+|...+.. ..+... ...+..++.
T Consensus 114 ~~~~~~~~~~-----------------------~~~~g~~l~~~~~~~~----~~~~~~-----------~~~~spdg~~ 155 (396)
T 3c5m_A 114 EQVIYTVDEE-----------------------WKGYGTWVANSDCTKL----VGIEIL-----------KRDWQPLTSW 155 (396)
T ss_dssp EEEEEECCTT-----------------------EEEEEEEEECTTSSEE----EEEEEE-----------GGGCCCCCSH
T ss_pred cEEEEecccc-----------------------cCCCCCEEEeccCCcc----cccccc-----------ccccCCCCcc
Confidence 8888764432 6677776666432100 000000 000011111
Q ss_pred --------CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCc--eEEEEEEECCCC
Q 004067 281 --------SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQT--KLKVLKFDIKTG 349 (776)
Q Consensus 281 --------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~--~~~l~~~d~~~g 349 (776)
......|+++|+++++...+.. ....+..+.||| ||+.|++....... ...|+++|++++
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~---------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIETGELEVIHQ---------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS 226 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETTTCCEEEEEE---------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred eeeeeeccCCCcceEEEEECCCCcEEeecc---------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence 0233679999999998877732 334577899999 88888887652211 157999999988
Q ss_pred ceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceE--EEEEeCCCceeeccccCCeEEEEEEeecC-CCc
Q 004067 350 QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRH--LYLHDINGTCLGPITEGDWMVEQIVGVNE-ASG 426 (776)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~--l~~~~~~g~~~~~lt~~~~~~~~~~~~s~-dg~ 426 (776)
+.+.++... ..+......|+| ++..+++.+...+... |++|++++++.++++..... . ..|++ ||+
T Consensus 227 ~~~~l~~~~-~~~~~~~~~~sp-------dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~--~-~~~s~~dg~ 295 (396)
T 3c5m_A 227 NVRKIKEHA-EGESCTHEFWIP-------DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPC--S-HLMSNFDGS 295 (396)
T ss_dssp CCEESSCCC-TTEEEEEEEECT-------TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSE--E-EEEECSSSS
T ss_pred ceeEeeccC-CCccccceEECC-------CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCC--C-CCccCCCCc
Confidence 877765521 122222223433 3445788877666545 99999998887777654321 2 45999 999
Q ss_pred EEEEEEccCCC------------ceeeEEEEEeCCCCCCccccceeecCCCC------------eEEEEEcCCcCEEEEE
Q 004067 427 QVYFTGTLDGP------------LESHLYCAKLYPDWNHTLEAPVKLTNGKG------------KHVAVLDHNMRNFVDF 482 (776)
Q Consensus 427 ~i~~~~~~~~~------------~~~~l~~~~~~~~g~~~~~~~~~l~~~~~------------~~~~~~spdg~~l~~~ 482 (776)
.+++.... .| ....||.+++. +. ..++|+.... ...+.|||||++|++.
T Consensus 296 ~l~~~~~~-~p~~~~~~~~~~~~~~~~i~~~d~~--~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 296 LMVGDGCD-APVDVADADSYNIENDPFLYVLNTK--AK----SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp EEEEEECC-C----------CCCCCCEEEEEETT--TT----BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred eEEEecCC-cceeeccccccccCCCCcEEEEecc--cC----ceEEccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence 77765432 11 23578999983 32 4556665433 3456999999999998
Q ss_pred eeCCCCCCEEEEEEcCCCce
Q 004067 483 HDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 483 ~~~~~~~~~i~~~~~~~~~~ 502 (776)
.... ..++||+++..++..
T Consensus 369 s~~~-~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 369 SDFE-GVPAIYIADVPESYK 387 (396)
T ss_dssp ECTT-SSCEEEEEECCTTCC
T ss_pred ecCC-CCceEEEEEEccccc
Confidence 7654 457999999877663
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=203.41 Aligned_cols=211 Identities=17% Similarity=0.158 Sum_probs=162.6
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~ 604 (776)
+.+.+++.+|..+.++++.|++ ++.|+||++||..+... .+..++..|+++||.|+++|+||+|.++.
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~-----~~~p~vv~~hG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 71 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK-----APAPVIVIAQDIFGVNA-------FMRETVSWLVDQGYAAVCPDLYARQAPGT 71 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS-----CSEEEEEEECCTTBSCH-------HHHHHHHHHHHTTCEEEEECGGGGTSTTC
T ss_pred ceEEEecCCCCeEEEEEECCCC-----CCCCEEEEEcCCCCCCH-------HHHHHHHHHHhCCcEEEeccccccCCCcc
Confidence 4567888899999999999875 47899999999766533 23456788999999999999999987753
Q ss_pred hhhhh-----------hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 605 KFEAS-----------IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 605 ~~~~~-----------~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
..... ..........+|+.++++++.++..++ ++++++|||+||.+++.++..+| ++++++..|..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~ 148 (236)
T 1zi8_A 72 ALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVG 148 (236)
T ss_dssp BCCTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSS
T ss_pred cccccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcc
Confidence 21100 001011123678899999998776544 69999999999999999999988 78888877642
Q ss_pred CcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCC
Q 004067 674 SWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753 (776)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H 753 (776)
.. +....+.+++.|+|+++|++|..+++..+..+++.+.+.+ +++++++++++|
T Consensus 149 ~~-------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~H 202 (236)
T 1zi8_A 149 LE-------------------------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHWYEEAGH 202 (236)
T ss_dssp GG-------------------------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEEEETTCCT
T ss_pred cc-------------------------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEEEECCCCc
Confidence 11 1234567788999999999999999999999999986655 899999999999
Q ss_pred CCCCCC-------cHHHHHHHHHHHHHHhC
Q 004067 754 MPRRHR-------DRIYMEERIWEFIERTL 776 (776)
Q Consensus 754 ~~~~~~-------~~~~~~~~~~~fl~~~l 776 (776)
.+.... ..+++++.+.+||+++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l 232 (236)
T 1zi8_A 203 SFARTGSSGYVASAAALANERTLDFLVPLQ 232 (236)
T ss_dssp TTTCTTSTTCCHHHHHHHHHHHHHHHGGGC
T ss_pred ccccCCCCccCHHHHHHHHHHHHHHHHHhc
Confidence 874432 24678999999999875
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=234.06 Aligned_cols=291 Identities=12% Similarity=0.063 Sum_probs=196.2
Q ss_pred CCceeEcCCCCEEEEEeCCCCcC----cceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSL----SRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+.+++|||||++|+|.+...... ..+||+||+++++.++++.... ....+..+.|
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~---------------------~~~~~~~~~~ 121 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV---------------------SNAKLQYAGW 121 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC---------------------CSCCCSBCCB
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc---------------------ccccccccEE
Confidence 58899999999999998754321 3689999999999877764221 0112667899
Q ss_pred eecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCc------------------cCceeCCCCCEEEEEECC----
Q 004067 133 VKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPV------------------IDPHLSSDGTMIAFVRDC---- 190 (776)
Q Consensus 133 sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~------------------~~~~~SpDg~~la~~~~~---- 190 (776)
|| ||++|+|..+++||+||+.+++.+ +++......+ ..+.|||||+.|+|.+.+
T Consensus 122 SP---dG~~la~~~~~~i~~~~~~~g~~~-~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~ 197 (723)
T 1xfd_A 122 GP---KGQQLIFIFENNIYYCAHVGKQAI-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV 197 (723)
T ss_dssp CS---STTCEEEEETTEEEEESSSSSCCE-EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred CC---CCCEEEEEECCeEEEEECCCCceE-EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc
Confidence 99 999999998899999999999888 6655422112 569999999999998732
Q ss_pred -------------------------------cEEEEecCCCce-eEEeeCCCCCceecCCcccceecccCCcceEEECCC
Q 004067 191 -------------------------------ELHVLNLLINEQ-RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD 238 (776)
Q Consensus 191 -------------------------------~l~~~~l~~g~~-~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD 238 (776)
.|+++++++++. ++++..... .... ..+..++||||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~----~~~~--------~~~~~~~~SpD 265 (723)
T 1xfd_A 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP----RMRE--------YYITMVKWATS 265 (723)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG----GGSS--------EEEEEEEESSS
T ss_pred ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC----CCcc--------ceeEEEEEeCC
Confidence 688999988874 555422100 0000 01346889999
Q ss_pred CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceE--
Q 004067 239 SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYL-- 316 (776)
Q Consensus 239 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~-- 316 (776)
|+.|++...... ....|++||+++++...+... .....+
T Consensus 266 g~~l~~~~~~~~--------------------------------~~~~i~~~d~~~g~~~~~~~~-------~~~~~~~~ 306 (723)
T 1xfd_A 266 TKVAVTWLNRAQ--------------------------------NVSILTLCDATTGVCTKKHED-------ESEAWLHR 306 (723)
T ss_dssp SEEEEEEEETTS--------------------------------CEEEEEEEETTTCCEEEEEEE-------ECSSCCCC
T ss_pred CeEEEEEEcCCC--------------------------------CeEEEEEEeCCCCcceEEEEe-------ccCCEEec
Confidence 998876653211 226789999999987665321 111111
Q ss_pred --EEEEeccCCeEEEEE-EeecC---ceEEEEEEE-CCCCc---eEEEEEeccCceeecc-cccccCCCCccccCCeEEE
Q 004067 317 --ARVNWMHGNILTAQV-LNRSQ---TKLKVLKFD-IKTGQ---RKVILVEELDSWVNLH-DCFTPLDKGVTKYSGGFIW 385 (776)
Q Consensus 317 --~~~~~SpDg~~l~~~-~~~~~---~~~~l~~~d-~~~g~---~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 385 (776)
..+.|||||+.|++. +.+.. ....|++|| ..++. .+.++..... ... ..|+| +++.++|
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~---~~~~~~~sp-------dg~~l~~ 376 (723)
T 1xfd_A 307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD---VTKILAYDE-------KGNKIYF 376 (723)
T ss_dssp CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC---EEEEEEEET-------TTTEEEE
T ss_pred cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeE---EEeeeEEcC-------CCCEEEE
Confidence 368999999988776 43332 156899999 57776 6666532211 110 12333 4555777
Q ss_pred EeccC--CceEEEEEeCCCc-eeecccc---CCeEEEEEEeecCCCcEEEEEEcc
Q 004067 386 ASEKT--GFRHLYLHDINGT-CLGPITE---GDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 386 ~s~~~--g~~~l~~~~~~g~-~~~~lt~---~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
.+..+ +..+||.++++++ +.+.|+. +...+..+ .|||||+++++....
T Consensus 377 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA-SFSHSMDFFLLKCEG 430 (723)
T ss_dssp EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE-EECTTSSEEEEECCS
T ss_pred EEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEE-EECCCCCEEEEEccC
Confidence 77665 6778999998876 5666764 23333344 499999999888654
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-22 Score=214.58 Aligned_cols=219 Identities=19% Similarity=0.187 Sum_probs=162.4
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
.+.+.++.|++. ++.|+||++||+++.. +...+..|+++||+|+++|+||+|++.... .
T Consensus 144 ~l~~~l~~P~~~----~~~P~Vv~~hG~~~~~---------~~~~a~~La~~Gy~V~a~D~rG~g~~~~~~--------~ 202 (422)
T 3k2i_A 144 RVRATLFLPPGP----GPFPGIIDIFGIGGGL---------LEYRASLLAGHGFATLALAYYNFEDLPNNM--------D 202 (422)
T ss_dssp TEEEEEEECSSS----CCBCEEEEECCTTCSC---------CCHHHHHHHTTTCEEEEEECSSSTTSCSSC--------S
T ss_pred cEEEEEEcCCCC----CCcCEEEEEcCCCcch---------hHHHHHHHHhCCCEEEEEccCCCCCCCCCc--------c
Confidence 589999999763 5789999999976541 122478899999999999999998765432 2
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccccc----------
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEK---------- 685 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------- 685 (776)
....+|+.++++++.++..++.++|+|+||||||.+++.++.++|+ ++++|+.+|..........+...
T Consensus 203 ~~~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (422)
T 3k2i_A 203 NISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLR 281 (422)
T ss_dssp CEETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGG
T ss_pred cCCHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchh
Confidence 2457899999999999888888999999999999999999999998 88988888765321100000000
Q ss_pred -cc---------CCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHH-HHHHHHHHHCCCC-eEEEEecCCCC
Q 004067 686 -YM---------GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT-ARLINALVAARKP-YEILIFPDERH 753 (776)
Q Consensus 686 -~~---------~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~H 753 (776)
.. ..................+.++++|+|+++|++|.++|.... ..+.+.+.+.+.+ +++++||+++|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~~gagH 361 (422)
T 3k2i_A 282 RIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGH 361 (422)
T ss_dssp GCEECTTSCEECTTCBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEEETTCCS
T ss_pred hcccCcchhHHHHHHHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 00 000000000111222334678899999999999999998855 6888999998887 99999999999
Q ss_pred CCCCC---------------------------CcHHHHHHHHHHHHHHhC
Q 004067 754 MPRRH---------------------------RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 754 ~~~~~---------------------------~~~~~~~~~~~~fl~~~l 776 (776)
.+..+ ...+++++.+.+||+++|
T Consensus 362 ~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L 411 (422)
T 3k2i_A 362 YIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHL 411 (422)
T ss_dssp CCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 97322 447789999999999986
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=203.65 Aligned_cols=231 Identities=15% Similarity=0.039 Sum_probs=168.6
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
..+...+|..+.+++..|... ...++.|+||++||++..... ...+..++..|+++||.|+++|+||+|.+....
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~-~~~~~~p~vv~~HGgg~~~~~----~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~ 91 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQ-NENYTFPAIIICPGGGYQHIS----QRESDPLALAFLAQGYQVLLLNYTVMNKGTNYN 91 (276)
T ss_dssp EECCCBTTBEEEEECCCC-------CCBCEEEEECCSTTTSCC----GGGSHHHHHHHHHTTCEEEEEECCCTTSCCCSC
T ss_pred ccccCCCCeEEEEEEeCCccc-ccCCCCCEEEEEcCCccccCC----chhhHHHHHHHHHCCCEEEEecCccCCCcCCCC
Confidence 445566888888877766542 122578999999996533221 123445678899999999999999998754211
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcC---CCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCCCCcccccccc
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDGYDTFY 682 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~~~~~~~~~~~ 682 (776)
.. . ....|+.++++++.++. .+|.++|+|+||||||.+++.++.+ .+..++++++.+|+.++.......
T Consensus 92 ~~---~----~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~~ 164 (276)
T 3hxk_A 92 FL---S----QNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSD 164 (276)
T ss_dssp TH---H----HHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSSS
T ss_pred cC---c----hHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCcc
Confidence 10 0 13678999999998863 3788899999999999999999998 788899999998877643220000
Q ss_pred --cccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCC-
Q 004067 683 --TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR- 759 (776)
Q Consensus 683 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~- 759 (776)
...++ +. +. ...++...+.++.+|+|++||++|..+|+..+..+++.+++.+.+++++++++++|.+....
T Consensus 165 ~~~~~~~--~~---~~-~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 238 (276)
T 3hxk_A 165 LSHFNFE--IE---NI-SEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANR 238 (276)
T ss_dssp SSSSCCC--CS---CC-GGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEESCCCTTCTTCST
T ss_pred hhhhhcC--ch---hh-hhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEECCCCCCccccCc
Confidence 01111 11 11 34556667778889999999999999999999999999999999999999999999874322
Q ss_pred -----------cHHHHHHHHHHHHHHh
Q 004067 760 -----------DRIYMEERIWEFIERT 775 (776)
Q Consensus 760 -----------~~~~~~~~~~~fl~~~ 775 (776)
...++.+.+.+||+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~wl~~~ 265 (276)
T 3hxk_A 239 TTAPSDAYCLPSVHRWVSWASDWLERQ 265 (276)
T ss_dssp TSCSSSTTCCHHHHTHHHHHHHHHHHH
T ss_pred cccccccccCchHHHHHHHHHHHHHhC
Confidence 3477889999999875
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-21 Score=230.36 Aligned_cols=336 Identities=11% Similarity=0.046 Sum_probs=236.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|||| +|+|.+..++ ..+||.++++++..++++.+ ..+..+.|||
T Consensus 206 v~~~~~s~d--~l~~~~~~dg--~~~l~~~~~~g~~~~~l~~~-------------------------~~~~~~~~Sp-- 254 (1045)
T 1k32_A 206 VSSPVIVGH--RIYFITDIDG--FGQIYSTDLDGKDLRKHTSF-------------------------TDYYPRHLNT-- 254 (1045)
T ss_dssp CEEEEEETT--EEEEEECTTS--SCEEEEEETTSCSCEECCCC-------------------------CSSCEEEEEE--
T ss_pred ccceEEeCC--EEEEEEeccC--ceEEEEEeCCCCcceEecCC-------------------------CCcceeeEcC--
Confidence 468899998 7888887554 46899999999888888753 2345679999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCC----------CCCccCceeC-CCCCEEEEEECCcEEEEecCCCceeEE
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSS----------CSPVIDPHLS-SDGTMIAFVRDCELHVLNLLINEQRQL 205 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~----------~~~~~~~~~S-pDg~~la~~~~~~l~~~~l~~g~~~~l 205 (776)
||++|++..++.||+||+.++... .+.... ...+..+.|| |||+.|++..+.+|+++++.+++.+++
T Consensus 255 -DG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~ 332 (1045)
T 1k32_A 255 -DGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV 332 (1045)
T ss_dssp -SSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEEC
T ss_pred -CCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEc
Confidence 999999999999999999665554 444321 1136789999 999999999999999999999987776
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
+..... .+..++|| ||+.|+|.+.+ .
T Consensus 333 ~~~~~~-----------------~~~~~~~s-dg~~l~~~s~~------------------------------------~ 358 (1045)
T 1k32_A 333 PEPLRI-----------------RYVRRGGD-TKVAFIHGTRE------------------------------------G 358 (1045)
T ss_dssp SCCSCE-----------------EEEEECSS-SEEEEEEEETT------------------------------------E
T ss_pred cCCCcc-----------------eEEeeeEc-CCCeEEEEECC------------------------------------C
Confidence 533220 03467899 99999997631 4
Q ss_pred EEE-EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceee
Q 004067 286 RLG-VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 286 ~l~-~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 364 (776)
.|+ +|++++++...+ ..+...+..++|||||+.|++... ...|++||+++|+.+.+........
T Consensus 359 ~l~~~~d~~~~~~~~l---------~~~~~~~~~~~~SpDG~~la~~~~----~~~v~~~d~~tg~~~~~~~~~~~~v-- 423 (1045)
T 1k32_A 359 DFLGIYDYRTGKAEKF---------EENLGNVFAMGVDRNGKFAVVAND----RFEIMTVDLETGKPTVIERSREAMI-- 423 (1045)
T ss_dssp EEEEEEETTTCCEEEC---------CCCCCSEEEEEECTTSSEEEEEET----TSEEEEEETTTCCEEEEEECSSSCC--
T ss_pred ceEEEEECCCCCceEe---------cCCccceeeeEECCCCCEEEEECC----CCeEEEEECCCCceEEeccCCCCCc--
Confidence 688 999999887766 334456788999999998887763 3479999999999888874322210
Q ss_pred cccccccCCCCccccCCeEEEEeccC-------CceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKT-------GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~-------g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
....|+| ++..+++.+... +...|++||+++++...++.+...+..+ .|++||+.|++.+.....
T Consensus 424 ~~~~~Sp-------DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~-~~spdG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 424 TDFTISD-------NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP-AFDADSKNLYYLSYRSLD 495 (1045)
T ss_dssp CCEEECT-------TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEE-EECTTSCEEEEEESCCCC
T ss_pred cceEECC-------CCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCc-eEcCCCCEEEEEecccCC
Confidence 1112333 333465655432 3469999999999888888876656555 499999999998863221
Q ss_pred -------------ceeeEEEEEeCCCCCCc--------------------cccceeecCCC-CeEEEEEcCCcCEEEE--
Q 004067 438 -------------LESHLYCAKLYPDWNHT--------------------LEAPVKLTNGK-GKHVAVLDHNMRNFVD-- 481 (776)
Q Consensus 438 -------------~~~~l~~~~~~~~g~~~--------------------~~~~~~l~~~~-~~~~~~~spdg~~l~~-- 481 (776)
....+|.+.+..++... ...+..++... .+..+++||||+.++.
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~ 575 (1045)
T 1k32_A 496 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 575 (1045)
T ss_dssp CEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECC
T ss_pred cCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEec
Confidence 11244555553222111 01233444333 3567899999977775
Q ss_pred -------EeeCCCCCCEEEEEEcCCCce
Q 004067 482 -------FHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 482 -------~~~~~~~~~~i~~~~~~~~~~ 502 (776)
...+...+..|+++|..+++.
T Consensus 576 ~~g~~~~~~~~~~~~~~l~~~d~~~~~~ 603 (1045)
T 1k32_A 576 VHGEFAAYYQGAPEKGVLLKYDVKTRKV 603 (1045)
T ss_dssp CCCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred ccCcccccccccCCCceEEEEECCCCcE
Confidence 223455678999999988874
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=223.61 Aligned_cols=321 Identities=13% Similarity=0.043 Sum_probs=215.6
Q ss_pred cccChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCC-CCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHH
Q 004067 39 VLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSP-DHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRR 117 (776)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 117 (776)
..++.+.+... ...+.+|+||+| .++|++.+ ...+...||.+ ..+++.++++.+... +..
T Consensus 12 ~~~~~~~~~~~----~~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~~~~------~~~------ 72 (662)
T 3azo_A 12 SPIDAALVASR----SGRPACVGAVGD--EVWWVAPRPAEAGRATLVRR-RADGAEESALPAPWN------VRN------ 72 (662)
T ss_dssp CSCCHHHHHHT----CSCCEEEEEETT--EEEEEEEETTTTTEEEEEEE-CTTSCEEESSCTTCC------BCC------
T ss_pred CCCCHHHHhhc----CCccceeEEcCC--eEEEEecCcccCCcEEEEEE-CCCCCcceeCCCCcc------ccc------
Confidence 34677777762 223489999965 68888762 11224578887 567888888864320 000
Q ss_pred HHHHHhcCCeeeEEEe--ecCCCceE-EEEeC--CCcEEEEeCC--C-CccceecCCCC----CCCccCceeCCCCCEEE
Q 004067 118 ERLRERGLGVTRYEWV--KTSSKKKI-IMVPL--PDGIYFQDLS--C-SKPELKLSSSS----CSPVIDPHLSSDGTMIA 185 (776)
Q Consensus 118 ~~~~~~~~~~~~~~~s--p~~~dg~~-l~~~~--~~~l~~~d~~--~-~~~~~~l~~~~----~~~~~~~~~SpDg~~la 185 (776)
.....+-..+.|+ | ||++ |+|.. +.+||++++. + ++.+ +|+... ......++|||||+.|+
T Consensus 73 ---~~~~~~~~~~~~~~SP---Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~ 145 (662)
T 3azo_A 73 ---RVFEYSGFPWAGVPRP---AGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVW 145 (662)
T ss_dssp ---CGGGTCCCCEEEECCS---SSSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEE
T ss_pred ---cccccCCccceeeeec---CCCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEE
Confidence 0000112256676 8 9999 99985 4679999998 6 7777 777632 22367799999999999
Q ss_pred EEECC-----------cEEEEecCC------CceeEEe-eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 186 FVRDC-----------ELHVLNLLI------NEQRQLT-HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 186 ~~~~~-----------~l~~~~l~~------g~~~~lt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
|++.. +||++++++ ++.++++ ..... +..++|||||++|+|.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 146 CMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRF------------------VTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp EEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSE------------------ECCCEECTTSSEEEEEEE
T ss_pred EEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCc------------------ccCceECCCCCEEEEEEC
Confidence 99853 799999999 8888876 43211 336789999999999885
Q ss_pred cCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC-CC---ceEEEEcccCCCCCCCCcceEEEEEecc
Q 004067 248 DSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA-GG---PVSWMDLQCGGTDQNYDEEYLARVNWMH 323 (776)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~---~~~~l~~~~~~~~~~~~~~~~~~~~~Sp 323 (776)
+.... .-...+|+++|++ +| +...+.. .....+..+.|||
T Consensus 208 ~~~~~----------------------------~~~~~~i~~~d~~~~g~~~~~~~l~~--------~~~~~~~~~~~sp 251 (662)
T 3azo_A 208 DHPRM----------------------------PWEGTELKTARVTEDGRFADTRTLLG--------GPEEAIAQAEWAP 251 (662)
T ss_dssp CTTCC----------------------------TTTCEEEEEEEECTTSCEEEEEEEEE--------ETTBCEEEEEECT
T ss_pred CCCCC----------------------------CCCCcEEEEEEECCCCcccccEEeCC--------CCCceEcceEECC
Confidence 43210 0012679999999 57 5555532 2245678899999
Q ss_pred CCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCcccc-CCeEEEEeccCCceEEEEEeCCC
Q 004067 324 GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDING 402 (776)
Q Consensus 324 Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~g 402 (776)
||+ +++.++++ +...||++|+++++.+.++...... ..+.|++....+.+. ++.+++.+.. +..+||.+++++
T Consensus 252 dg~-l~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~---~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 252 DGS-LIVATDRT-GWWNLHRVDPATGAATQLCRREEEF---AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp TSC-EEEEECTT-SSCEEEEECTTTCCEEESSCCSSBS---SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred CCe-EEEEECCC-CCeEEEEEECCCCceeecccccccc---cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence 999 66766654 3457999999999888776543221 122333322233333 4668888877 889999999999
Q ss_pred ceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 403 TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 403 ~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
++.++|+.+...+..+ ++++++.++|.+.... ....||.+++.
T Consensus 326 ~~~~~l~~~~~~~~~~--~s~~~~~~~~~~~~~~-~~~~i~~~d~~ 368 (662)
T 3azo_A 326 GELVDAAGPWTEWAAT--LTVSGTRAVGVAASPR-TAYEVVELDTV 368 (662)
T ss_dssp TEEEECCSSCCEEEEE--EEEETTEEEEEEEETT-EEEEEEEEETT
T ss_pred CcEEEecCCCCeEEEE--EecCCCEEEEEEcCCC-CCCEEEEEECC
Confidence 9899998775555433 3778888888765533 23689999973
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=216.81 Aligned_cols=229 Identities=15% Similarity=0.110 Sum_probs=173.6
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+.+.++. +|.+++++++.|++. ++.|+||++||+.+... .+...+..|+++||+|+++|+||+|.
T Consensus 125 ~~~~~v~~~~-dg~~i~~~l~~p~~~----~~~P~vl~~hG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~rG~G~ 192 (386)
T 2jbw_A 125 PPAERHELVV-DGIPMPVYVRIPEGP----GPHPAVIMLGGLESTKE-------ESFQMENLVLDRGMATATFDGPGQGE 192 (386)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSSS----CCEEEEEEECCSSCCTT-------TTHHHHHHHHHTTCEEEEECCTTSGG
T ss_pred CCeEEEEEEe-CCEEEEEEEEcCCCC----CCCCEEEEeCCCCccHH-------HHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 4688899988 899999999999874 57899999999765533 12223778889999999999999987
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
+... .........++.++++++.++..++.++|+|+|||+||++++.++.+ +++++++|+. |+.++......
T Consensus 193 s~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~ 264 (386)
T 2jbw_A 193 MFEY------KRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDL 264 (386)
T ss_dssp GTTT------CCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGG
T ss_pred CCCC------CCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHh
Confidence 6110 11111223568888999999887888999999999999999999998 8899999999 88776433221
Q ss_pred ccc-------cccCCC--CCCc-cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHH-HHCCCCeEEEEecC
Q 004067 682 YTE-------KYMGLP--SEDP-VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL-VAARKPYEILIFPD 750 (776)
Q Consensus 682 ~~~-------~~~~~~--~~~~-~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l-~~~~~~~~~~~~~~ 750 (776)
+.. ...+.. .... ..+...++...+.++++|+|+++|++|. +++..+.++++.+ .. +++++++++
T Consensus 265 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~~ 340 (386)
T 2jbw_A 265 ETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEKD 340 (386)
T ss_dssp SCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEETT
T ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeCC
Confidence 110 111211 1111 2334556667788999999999999999 9999999999887 43 689999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 751 ERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 751 ~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++|.+ .....++.+.+.+||+++|
T Consensus 341 ~gH~~--~~~~~~~~~~i~~fl~~~l 364 (386)
T 2jbw_A 341 GDHCC--HNLGIRPRLEMADWLYDVL 364 (386)
T ss_dssp CCGGG--GGGTTHHHHHHHHHHHHHH
T ss_pred CCcCC--ccchHHHHHHHHHHHHHhc
Confidence 99965 4567789999999999874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=228.43 Aligned_cols=289 Identities=11% Similarity=0.105 Sum_probs=203.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCC---ceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTC---KQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+.+++|||||++|+|.+. .+||+||++++ +.++++.+. ..+..+.||
T Consensus 111 v~~~~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~------------------------~~~~~~~~S 160 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGE------------------------GFATDAKLS 160 (741)
T ss_dssp SCCCEECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSS------------------------SCEEEEEEC
T ss_pred cceeEECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCC------------------------cccccccCC
Confidence 578999999999999876 46999999998 777776532 357889999
Q ss_pred ecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCC----------------ccCceeCCCCCEEEEEEC-C------
Q 004067 134 KTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSP----------------VIDPHLSSDGTMIAFVRD-C------ 190 (776)
Q Consensus 134 p~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~----------------~~~~~~SpDg~~la~~~~-~------ 190 (776)
| ||++|+|..+++||+||+.+++.+ .++...... ...+.|||||++|+|.+. .
T Consensus 161 P---DG~~la~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~ 236 (741)
T 2ecf_A 161 P---KGGFVSFIRGRNLWVIDLASGRQM-QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQ 236 (741)
T ss_dssp T---TSSEEEEEETTEEEEEETTTTEEE-ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEE
T ss_pred C---CCCEEEEEeCCcEEEEecCCCCEE-EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceE
Confidence 9 999999999899999999999887 666543211 367899999999999863 2
Q ss_pred ---------------------------cEEEEecCC-CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeE
Q 004067 191 ---------------------------ELHVLNLLI-NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFI 242 (776)
Q Consensus 191 ---------------------------~l~~~~l~~-g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l 242 (776)
.|+++++++ ++.+++........ .+..++| |||+.|
T Consensus 237 ~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~---------------~~~~~~~-pDg~~l 300 (741)
T 2ecf_A 237 KRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDI---------------YLARVNW-RDPQHL 300 (741)
T ss_dssp EEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSE---------------EEEEEEE-EETTEE
T ss_pred ecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcce---------------EEEEEEe-CCCCEE
Confidence 689999999 88777654311100 1347889 999999
Q ss_pred EEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec
Q 004067 243 AFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM 322 (776)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S 322 (776)
++...+... ....|++||+++++...+..... ......+..++||
T Consensus 301 ~~~~~~~~~-------------------------------~~~~i~~~d~~~g~~~~~~~~~~----~~~~~~~~~~~~s 345 (741)
T 2ecf_A 301 SFQRQSRDQ-------------------------------KKLDLVEVTLASNQQRVLAHETS----PTWVPLHNSLRFL 345 (741)
T ss_dssp EEEEEETTS-------------------------------SEEEEEEEETTTCCEEEEEEEEC----SSCCCCCSCCEEC
T ss_pred EEEEecccC-------------------------------CeEEEEEEECCCCceEEEEEcCC----CCcCCcCCceEEC
Confidence 998754321 22679999999998776643210 0000023468999
Q ss_pred cCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccc-ccccCCCCccccCCeEEEEeccCC--ceEEEEEe
Q 004067 323 HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHD-CFTPLDKGVTKYSGGFIWASEKTG--FRHLYLHD 399 (776)
Q Consensus 323 pDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~g--~~~l~~~~ 399 (776)
|||+ +++.++++ +...||.+|++++ .+.++.+..... .. .|+| +++.+++.+..++ ..+||.++
T Consensus 346 pdg~-~~~~~~~~-g~~~l~~~~~~~~-~~~l~~~~~~v~---~~~~~s~-------dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 346 DDGS-ILWSSERT-GFQHLYRIDSKGK-AAALTHGNWSVD---ELLAVDE-------KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TTSC-EEEEECTT-SSCEEEEECSSSC-EEESCCSSSCEE---EEEEEET-------TTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCe-EEEEecCC-CccEEEEEcCCCC-eeeeeecceEEE---eEeEEeC-------CCCEEEEEEeCCCCceEEEEEEE
Confidence 9999 44554443 4467999998776 666655432211 11 1323 3445777776665 66899998
Q ss_pred CCCceeeccccCCeEEEEEEeecCCCcEEEEEEccC-CCceeeEEEEEe
Q 004067 400 INGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD-GPLESHLYCAKL 447 (776)
Q Consensus 400 ~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~-~~~~~~l~~~~~ 447 (776)
.+++..++|+... .+.. +.||+||+.+++..... .| ..+|.+++
T Consensus 413 ~~g~~~~~l~~~~-~~~~-~~~spdg~~l~~~~~~~~~p--~~~~l~~~ 457 (741)
T 2ecf_A 413 LQGGQPQRLSKAP-GMHS-ASFARNASVYVDSWSNNSTP--PQIELFRA 457 (741)
T ss_dssp TTCCCCEECCCSC-SEEE-EEECTTSSEEEEEEEETTEE--EEEEEEET
T ss_pred cCCCCeeecccCC-CceE-EEECCCCCEEEEEecCCCCC--CeEEEEEc
Confidence 8888788888733 3333 45999999999886653 33 45677776
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=200.96 Aligned_cols=232 Identities=17% Similarity=0.159 Sum_probs=169.1
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
....+.+.+.. +|.++.++++.|.+ .+.|+||++||.+++.. ...+..++..|+++||.|+++|+||+|
T Consensus 19 ~~~~~~~~~~~-~g~~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~-----~~~~~~~~~~l~~~G~~v~~~d~~G~G 87 (270)
T 3pfb_A 19 FQGMATITLER-DGLQLVGTREEPFG-----EIYDMAIIFHGFTANRN-----TSLLREIANSLRDENIASVRFDFNGHG 87 (270)
T ss_dssp CCEEEEEEEEE-TTEEEEEEEEECSS-----SSEEEEEEECCTTCCTT-----CHHHHHHHHHHHHTTCEEEEECCTTST
T ss_pred eccceEEEecc-CCEEEEEEEEcCCC-----CCCCEEEEEcCCCCCcc-----ccHHHHHHHHHHhCCcEEEEEcccccc
Confidence 33456666665 89999999999875 35799999999776521 123455688899999999999999999
Q ss_pred CCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD- 679 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~- 679 (776)
.+.......... ...+|+.++++++.++. +.++++|+||||||++++.++.++|++++++++.+|........
T Consensus 88 ~s~~~~~~~~~~----~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~ 161 (270)
T 3pfb_A 88 DSDGKFENMTVL----NEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDAL 161 (270)
T ss_dssp TSSSCGGGCCHH----HHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHH
T ss_pred CCCCCCCccCHH----HHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhh
Confidence 886543221111 12678889999988765 34599999999999999999999999999999999886532110
Q ss_pred -ccccccccCCCCC---------------CccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCe
Q 004067 680 -TFYTEKYMGLPSE---------------DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 743 (776)
Q Consensus 680 -~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 743 (776)
....... ..+.. ....+...+....+.++++|+|+++|++|..+++..+..+.+.+ .++
T Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~ 236 (270)
T 3pfb_A 162 EGNTQGVT-YNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIY----QNS 236 (270)
T ss_dssp HTEETTEE-CCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHC----SSE
T ss_pred hhhhhccc-cCcccccccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhC----CCC
Confidence 0000000 00000 00112233555667888999999999999999999888887764 568
Q ss_pred EEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 744 EILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 744 ~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++++++++|.+ ..+...++.+.+.+||+++
T Consensus 237 ~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 237 TLHLIEGADHCF-SDSYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp EEEEETTCCTTC-CTHHHHHHHHHHHHHHC--
T ss_pred eEEEcCCCCccc-CccchHHHHHHHHHHHhhc
Confidence 999999999987 4667889999999999764
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=214.46 Aligned_cols=219 Identities=19% Similarity=0.223 Sum_probs=160.1
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
.+.+++|.|+.. ++.|+||++||+.+... ...+..|+++||.|+++|+||++++.... .
T Consensus 160 ~l~~~l~~P~~~----~~~P~Vv~lhG~~~~~~---------~~~a~~La~~Gy~Vla~D~rG~~~~~~~~--------~ 218 (446)
T 3hlk_A 160 RVRGTLFLPPEP----GPFPGIVDMFGTGGGLL---------EYRASLLAGKGFAVMALAYYNYEDLPKTM--------E 218 (446)
T ss_dssp TEEEEEEECSSS----CCBCEEEEECCSSCSCC---------CHHHHHHHTTTCEEEEECCSSSTTSCSCC--------S
T ss_pred eEEEEEEeCCCC----CCCCEEEEECCCCcchh---------hHHHHHHHhCCCEEEEeccCCCCCCCcch--------h
Confidence 599999999763 57899999999765421 22378899999999999999988765432 1
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccccccc--------
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM-------- 687 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------- 687 (776)
....+|+.++++++.++..++.++|+|+||||||.+|+.++.++|+ ++++|+.+|..........+....+
T Consensus 219 ~~~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (446)
T 3hlk_A 219 TLHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRN 297 (446)
T ss_dssp EEEHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGG
T ss_pred hCCHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchh
Confidence 2347899999999999988888999999999999999999999998 8888888876432110000000000
Q ss_pred ------------CCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHH-HHHHHHHHHHCCCC-eEEEEecCCCC
Q 004067 688 ------------GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINALVAARKP-YEILIFPDERH 753 (776)
Q Consensus 688 ------------~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~~-~~~~~~~~~~H 753 (776)
..................+.++++|+|+++|++|.++++.. +..+.+.+++.+.+ +++++||+++|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~pgagH 377 (446)
T 3hlk_A 298 RIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGH 377 (446)
T ss_dssp GCEECSSSCEECTTCBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEEETTBCS
T ss_pred ccccccchHHHHHHHHhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEEECCCCC
Confidence 00000000000111122367788999999999999999954 47899999999888 89999999999
Q ss_pred CCC---------------------------CCCcHHHHHHHHHHHHHHhC
Q 004067 754 MPR---------------------------RHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 754 ~~~---------------------------~~~~~~~~~~~~~~fl~~~l 776 (776)
.+. +....+++++.+.+||+++|
T Consensus 378 ~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L 427 (446)
T 3hlk_A 378 YIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHL 427 (446)
T ss_dssp CCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 873 11226789999999999986
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-22 Score=193.88 Aligned_cols=212 Identities=17% Similarity=0.177 Sum_probs=161.9
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+.++. +|.++.++++.|++ +.|+||++||.++... .| .+..+++.|+++||.|+++|+||+|.+
T Consensus 11 ~~~~~~~~~-~g~~l~~~~~~p~~------~~p~vv~~hG~~~~~~---~~--~~~~~~~~l~~~G~~v~~~d~~g~g~s 78 (223)
T 2o2g_A 11 QEYAVSVSV-GEVKLKGNLVIPNG------ATGIVLFAHGSGSSRY---SP--RNRYVAEVLQQAGLATLLIDLLTQEEE 78 (223)
T ss_dssp CEEEEEEEE-TTEEEEEEEECCTT------CCEEEEEECCTTCCTT---CH--HHHHHHHHHHHHTCEEEEECSSCHHHH
T ss_pred eeeEEEEec-CCeEEEEEEecCCC------CceEEEEecCCCCCCC---cc--chHHHHHHHHHCCCEEEEEcCCCcCCC
Confidence 467788887 88999999999865 4599999999765533 11 123457888899999999999998765
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (776)
..................|+.++++++..+..++..+++++|||+||.+++.++..+|++++++++.+|..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~------ 152 (223)
T 2o2g_A 79 EIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA------ 152 (223)
T ss_dssp HHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGC------
T ss_pred CccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcC------
Confidence 43221100000001125788999999998877888999999999999999999999999999999998864321
Q ss_pred cccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHH
Q 004067 683 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 762 (776)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~ 762 (776)
...+.+++.|+|+++|+.|..++... .+.+.+.+.+.+++++++++|.+...+...
T Consensus 153 --------------------~~~~~~~~~P~l~i~g~~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~ 208 (223)
T 2o2g_A 153 --------------------PSALPHVKAPTLLIVGGYDLPVIAMN----EDALEQLQTSKRLVIIPRASHLFEEPGALT 208 (223)
T ss_dssp --------------------TTTGGGCCSCEEEEEETTCHHHHHHH----HHHHHHCCSSEEEEEETTCCTTCCSTTHHH
T ss_pred --------------------HHHHhcCCCCEEEEEccccCCCCHHH----HHHHHhhCCCeEEEEeCCCCcccCChHHHH
Confidence 12356678999999999999886332 344455578899999999999986656778
Q ss_pred HHHHHHHHHHHHhC
Q 004067 763 YMEERIWEFIERTL 776 (776)
Q Consensus 763 ~~~~~~~~fl~~~l 776 (776)
++.+.+.+||+++|
T Consensus 209 ~~~~~i~~fl~~~l 222 (223)
T 2o2g_A 209 AVAQLASEWFMHYL 222 (223)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999886
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=203.76 Aligned_cols=237 Identities=16% Similarity=0.055 Sum_probs=170.4
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCC--CCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESR--YGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 598 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~--~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg 598 (776)
..+.+.+.+...+|..+.+.+| |+... .+.++.|+||++||++...... ..+..++..|+++||.|+++|+||
T Consensus 16 ~~~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~----~~~~~~~~~l~~~G~~v~~~d~~g 90 (283)
T 3bjr_A 16 YFQGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPV----AQAESLAMAFAGHGYQAFYLEYTL 90 (283)
T ss_dssp -CCSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCH----HHHHHHHHHHHTTTCEEEEEECCC
T ss_pred CCCCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCc----cccHHHHHHHHhCCcEEEEEeccC
Confidence 4467788888888888888888 76510 0225789999999965321111 124456788999999999999999
Q ss_pred CCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC---CCCCCcEEEEeechHHHHHHHHHhhCCCc-------------
Q 004067 599 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFPDV------------- 662 (776)
Q Consensus 599 ~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~~~~------------- 662 (776)
++.++..+ .....|+.++++++.+.. .++.++++|+||||||.+++.++.++|+.
T Consensus 91 ~~~~~~~~---------~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~ 161 (283)
T 3bjr_A 91 LTDQQPLG---------LAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLK 161 (283)
T ss_dssp TTTCSSCB---------THHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHC
T ss_pred CCccccCc---------hhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCC
Confidence 88763111 112568888899988753 46778999999999999999999999987
Q ss_pred eEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCC
Q 004067 663 FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 742 (776)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 742 (776)
++++++.+|..+.... +.... .........+...++...+.++.+|+|+++|++|..+|+..+..+++.+...+.+
T Consensus 162 ~~~~v~~~p~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~~g~~ 237 (283)
T 3bjr_A 162 PNNVVLGYPVISPLLG---FPKDD-ATLATWTPTPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAKIP 237 (283)
T ss_dssp CSSEEEESCCCCTTSB---C---------CCCCCGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHHTTCC
T ss_pred ccEEEEcCCccccccc---ccccc-chHHHHHHHhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHHCCCC
Confidence 8899999888753211 00000 0000011123344566667788899999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCC------------cHHHHHHHHHHHHHHh
Q 004067 743 YEILIFPDERHMPRRHR------------DRIYMEERIWEFIERT 775 (776)
Q Consensus 743 ~~~~~~~~~~H~~~~~~------------~~~~~~~~~~~fl~~~ 775 (776)
++++++++++|.+.... ...++.+.+.+||+++
T Consensus 238 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 238 YELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp EEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred eEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 99999999999763211 2367889999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=233.42 Aligned_cols=298 Identities=9% Similarity=0.057 Sum_probs=196.3
Q ss_pred CCceeEcCCCCEEEEEeCCCC----cCcceEEEEecCCCce---EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 004067 57 PTSIGFSPDDNLITYLLSPDH----SLSRKVFSFDPKTCKQ---ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR 129 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~----~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (776)
+.+++|||||++|+|.+...+ ....+||+||+++++. +++. ..+..
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---------------------------~~~~~ 114 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---------------------------RPIQY 114 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---------------------------SSBCC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---------------------------ccccc
Confidence 478999999999999876321 1135899999999987 4443 25678
Q ss_pred EEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCC------------------CccCceeCCCCCEEEEEECC-
Q 004067 130 YEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCS------------------PVIDPHLSSDGTMIAFVRDC- 190 (776)
Q Consensus 130 ~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~------------------~~~~~~~SpDg~~la~~~~~- 190 (776)
+.||| ||++|+|..+++||+||+.+++.+ +++..... ....+.|||||++|||.+.+
T Consensus 115 ~~~SP---DG~~la~~~~~~i~~~~~~~g~~~-~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~ 190 (719)
T 1z68_A 115 LCWSP---VGSKLAYVYQNNIYLKQRPGDPPF-QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND 190 (719)
T ss_dssp EEECS---STTCEEEEETTEEEEESSTTSCCE-ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred ceECC---CCCEEEEEECCeEEEEeCCCCCcE-EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence 99999 999999999999999999999887 66643211 11479999999999998742
Q ss_pred ----------------------------------cEEEEecCCCcee---EEeeCCCCCceecCCcccceecccCCcceE
Q 004067 191 ----------------------------------ELHVLNLLINEQR---QLTHGANGNTVTHGLAEYIAQEEMDRKTGY 233 (776)
Q Consensus 191 ----------------------------------~l~~~~l~~g~~~---~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (776)
.|+++++++++.+ ++.... ...+.. ..+..+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~----~~~~~~--------~~~~~~ 258 (719)
T 1z68_A 191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA----MIASSD--------YYFSWL 258 (719)
T ss_dssp TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH----HHHTSC--------EEEEEE
T ss_pred CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc----cCCCCc--------ceEEEe
Confidence 6788888887753 332100 000000 113478
Q ss_pred EECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE----cCCCceEEEEcccCCCCC
Q 004067 234 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS----AAGGPVSWMDLQCGGTDQ 309 (776)
Q Consensus 234 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d----~~~~~~~~l~~~~~~~~~ 309 (776)
+|||||+ +++...+... ....|++|| +++++...+.... .
T Consensus 259 ~~SpD~~-~~~~~~~~~~-------------------------------~~~~l~~~d~~~~~~~g~~~~~~~~~----~ 302 (719)
T 1z68_A 259 TWVTDER-VCLQWLKRVQ-------------------------------NVSVLSICDFREDWQTWDCPKTQEHI----E 302 (719)
T ss_dssp EESSSSE-EEEEEEESST-------------------------------TEEEEEEEEECSSSSSEECCGGGEEE----E
T ss_pred EEeCCCe-EEEEEecccc-------------------------------CeEEEEEEcccCCCCCCceEEEEecc----c
Confidence 8999965 6665433221 225789999 8887765442100 0
Q ss_pred CCCcceEE-----EEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEE
Q 004067 310 NYDEEYLA-----RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI 384 (776)
Q Consensus 310 ~~~~~~~~-----~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (776)
..+...+. .+.|||||+.+++..........|+++|+++++.+.++......+. .. .++++.++
T Consensus 303 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~---~~--------~~d~~~i~ 371 (719)
T 1z68_A 303 ESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAIN---IF--------RVTQDSLF 371 (719)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEE---EE--------EECSSEEE
T ss_pred ccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEE---EE--------EEeCCEEE
Confidence 01222232 6899999997777655555678899999999887777643222111 00 12466688
Q ss_pred EEecc----CCceEEEEEeCCCc--eeecccc----CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 385 WASEK----TGFRHLYLHDINGT--CLGPITE----GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 385 ~~s~~----~g~~~l~~~~~~g~--~~~~lt~----~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
|.+.. .+..+||.++++++ +.+.|+. +...+.. ..||+||+++++........ .++..++
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~s~dg~~l~~~~s~~~~p--~~~l~d~ 441 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT-ASFSDYAKYYALVCYGPGIP--ISTLHDG 441 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE-EEECGGGSSEEEEECCBSSC--EEEEECS
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE-EEECCCCCEEEEEcCCCCCC--eEEEEEC
Confidence 88866 57789999998766 4566664 2222333 35999999988876553322 3444454
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=198.90 Aligned_cols=231 Identities=12% Similarity=0.076 Sum_probs=164.3
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCC--CCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESR--YGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~--~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
.+.+.+. .+|..+.+.+|.|+... ...++.|+||++|||+...... ..+..++..|+++||.|+++|+||+|.
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~----~~~~~~~~~l~~~G~~v~~~d~~g~g~ 78 (277)
T 3bxp_A 4 VEQRTLN-TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSG----REEAPIATRMMAAGMHTVVLNYQLIVG 78 (277)
T ss_dssp EEEEEEC-STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCC----TTHHHHHHHHHHTTCEEEEEECCCSTT
T ss_pred eEEEEec-cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCC----ccchHHHHHHHHCCCEEEEEecccCCC
Confidence 4556664 47778999999997310 1225789999999965332211 134456788899999999999999874
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcC---CCCCCcEEEEeechHHHHHHHHHhhC--------------CCceE
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARF--------------PDVFQ 664 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--------------~~~~~ 664 (776)
++..+ .....|+.++++++.+.. .++.++|+|+||||||.+|+.++.++ +..++
T Consensus 79 ~~~~~---------~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 149 (277)
T 3bxp_A 79 DQSVY---------PWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHA 149 (277)
T ss_dssp TCCCT---------THHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCS
T ss_pred CCccC---------chHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcC
Confidence 43211 123678888898888752 35778999999999999999999985 67799
Q ss_pred EEEEcCCCCCccccc---ccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 665 CAVSGAPVTSWDGYD---TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 665 ~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
++++.+|..++.... ..+...+++ .+...++...+.++.+|+|++||++|..+|+..+..+++.+.+.+.
T Consensus 150 ~~v~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~ 222 (277)
T 3bxp_A 150 AIILGYPVIDLTAGFPTTSAARNQITT-------DARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQV 222 (277)
T ss_dssp EEEEESCCCBTTSSSSSSHHHHHHHCS-------CGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHHHHTTC
T ss_pred EEEEeCCcccCCCCCCCccccchhccc-------hhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCC
Confidence 999999986532110 000001111 1234456666777788999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCC--------------cHHHHHHHHHHHHHHh
Q 004067 742 PYEILIFPDERHMPRRHR--------------DRIYMEERIWEFIERT 775 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~--------------~~~~~~~~~~~fl~~~ 775 (776)
+++++++++++|.+.... ...++++.+.+||+++
T Consensus 223 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 270 (277)
T 3bxp_A 223 ATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQ 270 (277)
T ss_dssp CEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhc
Confidence 999999999999763322 2577899999999875
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=206.71 Aligned_cols=224 Identities=14% Similarity=0.086 Sum_probs=169.5
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccc-cc-c---ccchhhhHHHHhCCcEEEEECC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCD-SW-I---NTVDMRAQYLRSKGILVWKLDN 596 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~-~~-~---~~~~~~~~~l~~~G~~v~~~d~ 596 (776)
..+.+.+... +|..+.+++|.|++.. ..+++|+||++||+++...... .+ . ........+....|+.|+++|+
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~-~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~ 221 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVN-PDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQC 221 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCC-TTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECC
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCC-CCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecC
Confidence 4677889988 8999999999998742 2368899999999865421000 00 0 0000112344577899999999
Q ss_pred CCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 597 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 597 rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
||.++++..|........+.....|+.++++++.++..+|.++|+|+||||||++++.++.++|++|+++++.+|..+.
T Consensus 222 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~- 300 (380)
T 3doh_A 222 PPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDV- 300 (380)
T ss_dssp CTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCG-
T ss_pred CCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCCh-
Confidence 9988777655432222233456788999999999887788899999999999999999999999999999999887421
Q ss_pred cccccccccccCCCCCCccchhcCChhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCC---C
Q 004067 677 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE---R 752 (776)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~---~ 752 (776)
..+.++. .|+|++||+.|..+|+..+.++++.|++.+.+++++++|++ +
T Consensus 301 ---------------------------~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~h~~ 353 (380)
T 3doh_A 301 ---------------------------SKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEK 353 (380)
T ss_dssp ---------------------------GGGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEECTTHHHH
T ss_pred ---------------------------hhhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCceEEEEecCCcccC
Confidence 1233444 89999999999999999999999999999999999999999 4
Q ss_pred CCCCCCCcHHHHHH--HHHHHHHHh
Q 004067 753 HMPRRHRDRIYMEE--RIWEFIERT 775 (776)
Q Consensus 753 H~~~~~~~~~~~~~--~~~~fl~~~ 775 (776)
|.+.........+. .+.+||.++
T Consensus 354 h~~~~H~~~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 354 HGWDPHGSWIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp TTCCTTCTHHHHHTCHHHHHHHHTC
T ss_pred CCCCCchhHHHhcCCHHHHHHHHhh
Confidence 44433334555566 899999875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=218.28 Aligned_cols=292 Identities=14% Similarity=0.148 Sum_probs=203.2
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+..++|||| ++|+|... ..||+||+++++.++++.+. ..+..+.|||
T Consensus 83 ~v~~~~~spd-~~~~~~~~------~~i~~~d~~~~~~~~l~~~~------------------------~~~~~~~~Sp- 130 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFTQ------GGLVGFDMLARKVTYLFDTN------------------------EETASLDFSP- 130 (706)
T ss_dssp CCEEEEETTT-TEEEEEET------TEEEEEETTTTEEEEEECCT------------------------TCCTTCEECT-
T ss_pred CceeEEECCC-CeEEEEEC------CEEEEEECCCCceEEccCCc------------------------ccccCCcCCC-
Confidence 3588999999 88888754 46999999999988887532 2466789999
Q ss_pred CCCceEEEEeCCCcEEEEeCCC-----CccceecCCCCCCC--------------ccCceeCCCCCEEEEEEC-------
Q 004067 136 SSKKKIIMVPLPDGIYFQDLSC-----SKPELKLSSSSCSP--------------VIDPHLSSDGTMIAFVRD------- 189 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~~~d~~~-----~~~~~~l~~~~~~~--------------~~~~~~SpDg~~la~~~~------- 189 (776)
||++|+|..+++||+||+.+ ++.+ .++...... +..+.|||||++|+|.+.
T Consensus 131 --dG~~la~~~~~~i~v~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~ 207 (706)
T 2z3z_A 131 --VGDRVAYVRNHNLYIARGGKLGEGMSRAI-AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKP 207 (706)
T ss_dssp --TSSEEEEEETTEEEEEECBCTTSCCCCCE-ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCC
T ss_pred --CCCEEEEEECCeEEEEecCcccccCCCcE-EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCce
Confidence 99999999999999999999 8887 665543221 378999999999999971
Q ss_pred ---------------------------CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeE
Q 004067 190 ---------------------------CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFI 242 (776)
Q Consensus 190 ---------------------------~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l 242 (776)
..|+++++++++.+++........ .+..++|||||+.|
T Consensus 208 ~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~---------------~~~~~~~spdg~~l 272 (706)
T 2z3z_A 208 TPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK---------------FLTNLSWSPDENIL 272 (706)
T ss_dssp EEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC---------------EEEEEEECTTSSEE
T ss_pred EEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce---------------eEeeEEEECCCCEE
Confidence 359999999998877654321100 03468899999999
Q ss_pred EEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC-ceEEEEcccCCCCCCCCcceEEEEEe
Q 004067 243 AFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG-PVSWMDLQCGGTDQNYDEEYLARVNW 321 (776)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (776)
++...+... ....|++||++++ +...+..... ......+..+.|
T Consensus 273 ~~~~~~~~~-------------------------------~~~~v~~~d~~~g~~~~~~~~~~~----~~~~~~~~~~~~ 317 (706)
T 2z3z_A 273 YVAEVNRAQ-------------------------------NECKVNAYDAETGRFVRTLFVETD----KHYVEPLHPLTF 317 (706)
T ss_dssp EEEEECTTS-------------------------------CEEEEEEEETTTCCEEEEEEEEEC----SSCCCCCSCCEE
T ss_pred EEEEeCCCC-------------------------------CeeEEEEEECCCCceeeEEEEccC----CCeECccCCcee
Confidence 997754321 2267899999999 5555532100 011112345799
Q ss_pred cc--CCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCC--ceEEEE
Q 004067 322 MH--GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG--FRHLYL 397 (776)
Q Consensus 322 Sp--Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g--~~~l~~ 397 (776)
|| ||++++ ..+++ +...||.+|.+++..+.++.+...... ...|+| +++.+++.+..++ ..+||.
T Consensus 318 sp~~dg~~l~-~~~~~-g~~~l~~~~~~~~~~~~l~~~~~~v~~--~~~~sp-------dg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 318 LPGSNNQFIW-QSRRD-GWNHLYLYDTTGRLIRQVTKGEWEVTN--FAGFDP-------KGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp CTTCSSEEEE-EECTT-SSCEEEEEETTSCEEEECCCSSSCEEE--EEEECT-------TSSEEEEEESSSCTTCBEEEE
T ss_pred ecCCCCEEEE-EEccC-CccEEEEEECCCCEEEecCCCCeEEEe--eeEEcC-------CCCEEEEEecCCCCceEEEEE
Confidence 99 998554 44443 456799999877777777654322110 012333 3445777776654 579999
Q ss_pred EeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEcc-CCCceeeEEEEEe
Q 004067 398 HDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL-DGPLESHLYCAKL 447 (776)
Q Consensus 398 ~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~-~~~~~~~l~~~~~ 447 (776)
+++++++.+.++... .+.. +.|||||++|++.... ..+ ..+|.+++
T Consensus 387 ~d~~~~~~~~l~~~~-~~~~-~~~spdg~~l~~~~~~~~~p--~~i~l~d~ 433 (706)
T 2z3z_A 387 IDIKGGKTKDLTPES-GMHR-TQLSPDGSAIIDIFQSPTVP--RKVTVTNI 433 (706)
T ss_dssp EETTCCCCEESCCSS-SEEE-EEECTTSSEEEEEEECSSCS--CEEEEEES
T ss_pred EEcCCCCceeccCCC-ceEE-EEECCCCCEEEEEecCCCCC--cEEEEEEC
Confidence 999988888887543 3444 4599999998888554 334 35666676
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=208.46 Aligned_cols=237 Identities=16% Similarity=0.113 Sum_probs=170.0
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
....+.+.+++.+|.++.++++.|++. .++.|+||++||+++... .+ .....++++||+|+++|+||+|
T Consensus 65 ~~~~~~~~~~~~dg~~i~~~~~~P~~~---~~~~p~vv~~HG~g~~~~---~~-----~~~~~l~~~G~~v~~~d~rG~g 133 (337)
T 1vlq_A 65 TVEAYDVTFSGYRGQRIKGWLLVPKLE---EEKLPCVVQYIGYNGGRG---FP-----HDWLFWPSMGYICFVMDTRGQG 133 (337)
T ss_dssp SEEEEEEEEECGGGCEEEEEEEEECCS---CSSEEEEEECCCTTCCCC---CG-----GGGCHHHHTTCEEEEECCTTCC
T ss_pred CeEEEEEEEEcCCCCEEEEEEEecCCC---CCCccEEEEEcCCCCCCC---Cc-----hhhcchhhCCCEEEEecCCCCC
Confidence 445788999988999999999999763 157899999999766532 11 2245678899999999999999
Q ss_pred CCchhh--hh---------------hhhhccC----CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 601 RRGLKF--EA---------------SIKHNCG----RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 601 ~~~~~~--~~---------------~~~~~~~----~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
.++... .. ....... ...++|+.++++++.++..+|.++|+|+|||+||.+++.++..+
T Consensus 134 ~s~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~ 213 (337)
T 1vlq_A 134 SGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALS 213 (337)
T ss_dssp CSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHC
T ss_pred CcccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcC
Confidence 664320 00 0000000 02478999999999998888889999999999999999999998
Q ss_pred CCceEEEEEcCCCCC-cccccc-----ccc--cccc-CCCCCCc---cchhcCChhhhhccCCCcEEEEecCCCCccChH
Q 004067 660 PDVFQCAVSGAPVTS-WDGYDT-----FYT--EKYM-GLPSEDP---VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR 727 (776)
Q Consensus 660 ~~~~~~~v~~~~~~~-~~~~~~-----~~~--~~~~-~~~~~~~---~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~ 727 (776)
|+ ++++++.+|... +..... .+. ..++ ..+.... ..+...++...+.++++|+|+++|+.|.++|+.
T Consensus 214 p~-v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~p~~ 292 (337)
T 1vlq_A 214 KK-AKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPS 292 (337)
T ss_dssp SS-CCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHH
T ss_pred CC-ccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCCEEEEeeCCCCCCCch
Confidence 85 788888888543 211100 000 0011 1111111 112344677778899999999999999999999
Q ss_pred HHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 728 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 728 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
.+..+++++. .+++++++++++|.+. ..+..+.+.+||.++|
T Consensus 293 ~~~~~~~~l~---~~~~~~~~~~~gH~~~----~~~~~~~~~~fl~~~l 334 (337)
T 1vlq_A 293 TVFAAYNYYA---GPKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLF 334 (337)
T ss_dssp HHHHHHHHCC---SSEEEEEETTCCTTTT----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcC---CCcEEEEcCCCCCCCc----chhhHHHHHHHHHHHH
Confidence 9999988873 3689999999999862 3456788889988764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.6e-21 Score=199.23 Aligned_cols=311 Identities=12% Similarity=0.100 Sum_probs=197.1
Q ss_pred cccChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCC----CcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHH
Q 004067 39 VLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPD----HSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEK 114 (776)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~----~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~ 114 (776)
+.+++++++..+.. .+++| ||++|+|+.... +....+||++++++++.+++.
T Consensus 4 ~~~~~~~l~~~~~~-----~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----------------- 59 (347)
T 2gop_A 4 IEWNEKTFAKFAYL-----SDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIE----------------- 59 (347)
T ss_dssp ------CCCCSCEE-----EEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEEE-----------------
T ss_pred ccCCcccceeeEEc-----ccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEcc-----------------
Confidence 45778888877666 88999 999999986421 223468999999999987772
Q ss_pred HHHHHHHHhcCCeeeEEEeecCCCceEEEEeCC------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE
Q 004067 115 LRRERLRERGLGVTRYEWVKTSSKKKIIMVPLP------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR 188 (776)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~ 188 (776)
.+..+.||| ||++|+|... .+||++|+++++.+ .++.... +..+.|||||+.|+|.+
T Consensus 60 -----------~~~~~~~Sp---Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~--~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 60 -----------NATMPRISP---DGKKIAFMRANEEKKVSEIWVADLETLSSK-KILEAKN--IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp -----------SCEEEEECT---TSSEEEEEEEETTTTEEEEEEEETTTTEEE-EEEEESE--EEEEEECTTSSEEEEEE
T ss_pred -----------cCCCeEECC---CCCEEEEEEeccCCCcceEEEEECCCCceE-EEEcCCC--ccceeECCCCCEEEEEE
Confidence 467889999 9999999732 23888888887776 5554432 56778888888888776
Q ss_pred CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 189 DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 189 ~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
... .+....+. +..+.|..||.....
T Consensus 123 ~~~-----~~~~~~~~-------------------------~~~~~~~~~g~~~~~------------------------ 148 (347)
T 2gop_A 123 FKR-----REDEDFIF-------------------------EDDVPAWFDDLGFFD------------------------ 148 (347)
T ss_dssp ECC-----CC----------------------------------CCCC--------------------------------
T ss_pred ccC-----CCcCCcEE-------------------------EcccceeecCccccc------------------------
Confidence 421 00000000 001113344432111
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC-----c-eEEE
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-----T-KLKV 341 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~-~~~l 341 (776)
....+|+++|+++++. +.+.. . .+..+.||||| +++..+... . ...|
T Consensus 149 -------------~~~~~l~~~d~~~~~~~~~l~~----------~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 149 -------------GEKTTFWIFDTESEEVIEEFEK----------P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp --------------CEEEEEEEETTTTEEEEEEEE----------E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEE
T ss_pred -------------CccceEEEEECCCCeEEeeecC----------C-CcccccCCCCe--EEEEEecccccccccccccE
Confidence 0126799999999987 66632 1 45678999999 555544432 2 5689
Q ss_pred EEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC-----CceEEEEEeCCCceeeccccC-CeEE
Q 004067 342 LKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT-----GFRHLYLHDINGTCLGPITEG-DWMV 415 (776)
Q Consensus 342 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----g~~~l~~~~~~g~~~~~lt~~-~~~~ 415 (776)
|++| +++.+.++.+ .... .+ +.++..+++.+... ...+||+++ +++.++++.+ +..+
T Consensus 203 ~~~d--~~~~~~l~~~-~~~~-------~~-----spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~ 265 (347)
T 2gop_A 203 YIWE--DGKEEKMFEK-VSFY-------AV-----DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGV 265 (347)
T ss_dssp EEEE--TTEEEEEEEE-ESEE-------EE-----EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEE
T ss_pred EEeC--CCceEEeccC-ccee-------eE-----CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCccc
Confidence 9999 7788888765 2211 11 23455577777543 246899999 5666777765 4555
Q ss_pred EEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEE
Q 004067 416 EQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILL 494 (776)
Q Consensus 416 ~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~ 494 (776)
...+.|+ || +++.+..++ ..+|| ++ + | ...+++...+ +..++++| .++++.++...|++||.
T Consensus 266 ~~~~~~s-dg--~~~~~~~~~--~~~l~-~~-~--g-----~~~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 266 GQAKIKD-GK--VYFTLFEEG--SVNLY-IW-D--G-----EIKPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFT 328 (347)
T ss_dssp EEEEEET-TE--EEEEEEETT--EEEEE-EE-S--S-----SEEEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEE
T ss_pred CCccEEc-Cc--EEEEEecCC--cEEEE-Ec-C--C-----ceEEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheE
Confidence 5535588 77 777776665 37899 87 2 3 3455555443 56788998 48888888888889999
Q ss_pred EEcCCCceeEeecc
Q 004067 495 CSLQDGSLVLPLYE 508 (776)
Q Consensus 495 ~~~~~~~~~~~l~~ 508 (776)
++ |+ .++++.
T Consensus 329 ~~---g~-~~~lt~ 338 (347)
T 2gop_A 329 WD---GE-EKQLTD 338 (347)
T ss_dssp ES---SS-EEECCC
T ss_pred eC---Cc-EEEecc
Confidence 87 54 455664
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-21 Score=185.68 Aligned_cols=203 Identities=21% Similarity=0.254 Sum_probs=154.7
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+.+++.+| +++++++.|... ++.|+||++||++....... ...+..++..|+++||.|+++|+||+|.+
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~~----~~~~~vv~~HG~~~~~~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s 77 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKGI----EKSVTGIICHPHPLHGGTMN--NKVVTTLAKALDELGLKTVRFNFRGVGKS 77 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSSC----CCSEEEEEECSCGGGTCCTT--CHHHHHHHHHHHHTTCEEEEECCTTSTTC
T ss_pred ccceEEEECCCc-eEEEEEEcCCCC----CCCCEEEEEcCCCCCCCccC--CchHHHHHHHHHHCCCEEEEEecCCCCCC
Confidence 477889999999 999999999753 46799999999542211111 11234567889999999999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (776)
...+. ......+|+.++++++.++. +.++++++||||||.+++.++ .+| .++++++.+|..+..
T Consensus 78 ~~~~~------~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~------ 141 (208)
T 3trd_A 78 QGRYD------NGVGEVEDLKAVLRWVEHHW--SQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYE------ 141 (208)
T ss_dssp CSCCC------TTTHHHHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSG------
T ss_pred CCCcc------chHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccC------
Confidence 65421 11234789999999998873 457999999999999999999 667 789999888775210
Q ss_pred cccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHH
Q 004067 683 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 762 (776)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~ 762 (776)
....+..++.|+|+++|++|..+++..+.++++.+ ..+++++++++++|.+.. ...
T Consensus 142 -------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~H~~~~--~~~ 197 (208)
T 3trd_A 142 -------------------GFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQI---SSPVEFVVMSGASHFFHG--RLI 197 (208)
T ss_dssp -------------------GGTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHS---SSCCEEEEETTCCSSCTT--CHH
T ss_pred -------------------CchhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHc---cCceEEEEeCCCCCcccc--cHH
Confidence 01223445789999999999999999988888776 334899999999998743 347
Q ss_pred HHHHHHHHHH
Q 004067 763 YMEERIWEFI 772 (776)
Q Consensus 763 ~~~~~~~~fl 772 (776)
++.+.+.+||
T Consensus 198 ~~~~~i~~fl 207 (208)
T 3trd_A 198 ELRELLVRNL 207 (208)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7788888886
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=202.60 Aligned_cols=238 Identities=15% Similarity=0.123 Sum_probs=164.2
Q ss_pred CCCCceEEEEEcCCCcEEEEEEEc-CCCC-------------------CCCCCCceEEEEEcCCCCcccccccccccchh
Q 004067 520 QLEPPDIVQIQANDGTVLYGALYK-PDES-------------------RYGPPPYKTLISVYGGPCVQLVCDSWINTVDM 579 (776)
Q Consensus 520 ~~~~~~~~~~~~~dg~~l~~~~~~-P~~~-------------------~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~ 579 (776)
.....+.+.+...+| +.+.+|. |... ....++.|+||++|||+...... .+ ..+..
T Consensus 60 ~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~-~~-~~~~~ 135 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSA-SS-TIYDS 135 (365)
T ss_dssp TTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCT-TB-HHHHH
T ss_pred CCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCC-ch-hhHHH
Confidence 345678888988787 7888887 8652 01225789999999986532211 11 11344
Q ss_pred hhHHHHhC-CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC----CCCCC-cEEEEeechHHHHHH
Q 004067 580 RAQYLRSK-GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG----LAKVG-HIGLYGWSYGGYLSA 653 (776)
Q Consensus 580 ~~~~l~~~-G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~id~~-~i~l~G~S~GG~~a~ 653 (776)
++..|+.. ||+|+++|||+.++... ...++|+.++++|+.++. .+|.+ +|+|+|+||||++|+
T Consensus 136 ~~~~la~~~g~~Vv~~dyR~~p~~~~-----------~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~ 204 (365)
T 3ebl_A 136 LCRRFVKLSKGVVVSVNYRRAPEHRY-----------PCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAH 204 (365)
T ss_dssp HHHHHHHHHTSEEEEECCCCTTTSCT-----------THHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHH
T ss_pred HHHHHHHHCCCEEEEeeCCCCCCCCC-----------cHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHH
Confidence 56777765 99999999997654321 123789999999999764 57888 999999999999999
Q ss_pred HHHhhCCC---ceEEEEEcCCCCCccccccc-----------------ccccccCCCCCCccchhcCChhh-hhccCC--
Q 004067 654 ITLARFPD---VFQCAVSGAPVTSWDGYDTF-----------------YTEKYMGLPSEDPVGYEYSSVMH-HVHKMK-- 710 (776)
Q Consensus 654 ~~a~~~~~---~~~~~v~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~-- 710 (776)
.++.+.++ .++++|+.+|+.+....... +...++..... ......+++. ....++
T Consensus 205 ~~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~l~~~ 282 (365)
T 3ebl_A 205 HVAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDAD--RDHPACNPFGPNGRRLGGL 282 (365)
T ss_dssp HHHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCC--TTSTTTCTTSTTCCCCTTS
T ss_pred HHHHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCC--CCCcccCCCCCcchhhccC
Confidence 99987554 78999999998875321110 00111111100 0011112221 223343
Q ss_pred --CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC---CCCcHHHHHHHHHHHHHHhC
Q 004067 711 --GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR---RHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 711 --~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~---~~~~~~~~~~~~~~fl~~~l 776 (776)
.|+|++||+.|..+ ..+.+++++|++.++++++++|++++|.+. ..+...++++.+.+||++++
T Consensus 283 ~~pP~Li~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~ 351 (365)
T 3ebl_A 283 PFAKSLIIVSGLDLTC--DRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANL 351 (365)
T ss_dssp CCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCcccch--hHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 59999999999665 456899999999999999999999999874 34567789999999999875
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=201.42 Aligned_cols=229 Identities=15% Similarity=0.162 Sum_probs=163.5
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~ 601 (776)
..+.+++++.+| .+.+++|.|... +.|+||++||++....... .+...+..|+. .||.|+++|||+.++
T Consensus 62 ~~~~~~~~~~~g-~i~~~~~~p~~~-----~~p~vv~~HGgg~~~g~~~----~~~~~~~~la~~~g~~V~~~dyr~~p~ 131 (326)
T 3ga7_A 62 TTRTCAVPTPYG-DVTTRLYSPQPT-----SQATLYYLHGGGFILGNLD----THDRIMRLLARYTGCTVIGIDYSLSPQ 131 (326)
T ss_dssp EEEEEEECCTTS-CEEEEEEESSSS-----CSCEEEEECCSTTTSCCTT----TTHHHHHHHHHHHCSEEEEECCCCTTT
T ss_pred ceEEEEeecCCC-CeEEEEEeCCCC-----CCcEEEEECCCCcccCChh----hhHHHHHHHHHHcCCEEEEeeCCCCCC
Confidence 347889998888 799999999763 3399999999873322111 23445777777 899999999998765
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcC---CCCCCcEEEEeechHHHHHHHHHhhCCCc------eEEEEEcCCC
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFPDV------FQCAVSGAPV 672 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~~~~------~~~~v~~~~~ 672 (776)
... ...++|+.++++++.++. .+|.++|+|+|+|+||.+|+.++.++++. ++++++.+|+
T Consensus 132 ~~~-----------~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~ 200 (326)
T 3ga7_A 132 ARY-----------PQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGL 200 (326)
T ss_dssp SCT-----------THHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCC
T ss_pred CCC-----------CcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccc
Confidence 431 123689999999999863 57889999999999999999999877654 8999999988
Q ss_pred CCcccccc--c---------------ccccccCCCCCCccchhcCChh-hhhccCCCcEEEEecCCCCccChHHHHHHHH
Q 004067 673 TSWDGYDT--F---------------YTEKYMGLPSEDPVGYEYSSVM-HHVHKMKGKLLLVHGMIDENVHFRHTARLIN 734 (776)
Q Consensus 673 ~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 734 (776)
.+...... . +...++......... ..++. ..+.+..+|+|++||+.|.++ .++..+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~~~ 276 (326)
T 3ga7_A 201 YGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESP--WYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLLHQ 276 (326)
T ss_dssp CSCSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCT--TTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHHHH
T ss_pred cccCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCCccCCc--ccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHHHH
Confidence 65432100 0 001111110000000 00111 122334569999999999988 47889999
Q ss_pred HHHHCCCCeEEEEecCCCCCCCC----CCcHHHHHHHHHHHHHHhC
Q 004067 735 ALVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 735 ~l~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~fl~~~l 776 (776)
++++.+.++++++|++++|.+.. .+...++++.+.+||+++|
T Consensus 277 ~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l 322 (326)
T 3ga7_A 277 TLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARM 322 (326)
T ss_dssp HHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999843 2345789999999999874
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=205.65 Aligned_cols=233 Identities=20% Similarity=0.215 Sum_probs=168.5
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+.+.+...+|..++++++.|++. ++.|+||++||+++... .| .... .+++.||.|+++|+||+|.
T Consensus 80 ~~~~~~~~~~~~g~~l~~~~~~P~~~----~~~p~vv~~HG~g~~~~---~~----~~~~-~~~~~G~~v~~~D~rG~g~ 147 (346)
T 3fcy_A 80 AECYDLYFTGVRGARIHAKYIKPKTE----GKHPALIRFHGYSSNSG---DW----NDKL-NYVAAGFTVVAMDVRGQGG 147 (346)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEESCS----SCEEEEEEECCTTCCSC---CS----GGGH-HHHTTTCEEEEECCTTSSS
T ss_pred eEEEEEEEEcCCCCEEEEEEEecCCC----CCcCEEEEECCCCCCCC---Ch----hhhh-HHHhCCcEEEEEcCCCCCC
Confidence 35678899988999999999999863 57899999999876643 23 2223 5678999999999999998
Q ss_pred Cchhhhhhh---------------hhc-cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEE
Q 004067 602 RGLKFEASI---------------KHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 665 (776)
Q Consensus 602 ~~~~~~~~~---------------~~~-~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~ 665 (776)
+........ ... .....+.|+.++++++..+..+|.++|+++|||+||.+++.++..+|+ +++
T Consensus 148 s~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~ 226 (346)
T 3fcy_A 148 QSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRK 226 (346)
T ss_dssp SCCCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCE
T ss_pred CCCCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccE
Confidence 764421100 000 000125899999999998887888999999999999999999999998 899
Q ss_pred EEEcCCCCCc-ccc------ccccc--ccccC--CC--CCC---ccchhcCChhhhhccCCCcEEEEecCCCCccChHHH
Q 004067 666 AVSGAPVTSW-DGY------DTFYT--EKYMG--LP--SED---PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 729 (776)
Q Consensus 666 ~v~~~~~~~~-~~~------~~~~~--~~~~~--~~--~~~---~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 729 (776)
+++.+|.... ... ...+. ..++. .+ ... ...+...++...+.++++|+|+++|+.|.++++..+
T Consensus 227 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G~~D~~~~~~~~ 306 (346)
T 3fcy_A 227 VVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTV 306 (346)
T ss_dssp EEEESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEETTCSSSCHHHH
T ss_pred EEECCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEeeCCCCcCCHHHH
Confidence 9999886531 110 00000 00000 01 000 012233455667888999999999999999999988
Q ss_pred HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 730 ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 730 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..+++++ ..+++++++++++|.+. .++.+.+.+||++.
T Consensus 307 ~~~~~~~---~~~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~l 344 (346)
T 3fcy_A 307 FAAYNNI---QSKKDIKVYPDYGHEPM-----RGFGDLAMQFMLEL 344 (346)
T ss_dssp HHHHTTC---CSSEEEEEETTCCSSCC-----TTHHHHHHHHHHTT
T ss_pred HHHHHhc---CCCcEEEEeCCCCCcCH-----HHHHHHHHHHHHHh
Confidence 8888776 23789999999999874 45678899999763
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-21 Score=184.95 Aligned_cols=209 Identities=22% Similarity=0.247 Sum_probs=159.9
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+.+.+++.+| .+.++++.|++. ++++.|+||++||++........ ..+..++..|+++||.|+++|+||+|.
T Consensus 8 ~~~~~~~~~~~~g-~~~~~~~~p~~~--~~~~~~~vv~~HG~~~~~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~ 82 (220)
T 2fuk_A 8 TESAALTLDGPVG-PLDVAVDLPEPD--VAVQPVTAIVCHPLSTEGGSMHN--KVVTMAARALRELGITVVRFNFRSVGT 82 (220)
T ss_dssp SSCEEEEEEETTE-EEEEEEECCCTT--SCCCSEEEEEECSCTTTTCSTTC--HHHHHHHHHHHTTTCEEEEECCTTSTT
T ss_pred ccceEEEEeCCCC-eEEEEEEeCCCC--CccccCEEEEECCCCCcCCcccc--hHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4578899999888 899999999763 11357999999996432111111 123456788999999999999999998
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
+...+. ......+|+.++++++.++. +.++++++|||+||.+++.++.++ .++++++.+|......
T Consensus 83 s~~~~~------~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~---- 148 (220)
T 2fuk_A 83 SAGSFD------HGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD---- 148 (220)
T ss_dssp CCSCCC------TTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC----
T ss_pred CCCCcc------cCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh----
Confidence 765431 12234789999999998875 567999999999999999999987 7899999888754321
Q ss_pred ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 761 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 761 (776)
+ ..+. ...|+|+++|++|..+++..+.++++.+ ..+++++++++++|.+.. ..
T Consensus 149 ---------------~------~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~H~~~~--~~ 201 (220)
T 2fuk_A 149 ---------------F------SDVQ-PPAQWLVIQGDADEIVDPQAVYDWLETL---EQQPTLVRMPDTSHFFHR--KL 201 (220)
T ss_dssp ---------------C------TTCC-CCSSEEEEEETTCSSSCHHHHHHHHTTC---SSCCEEEEETTCCTTCTT--CH
T ss_pred ---------------h------hhcc-cCCcEEEEECCCCcccCHHHHHHHHHHh---CcCCcEEEeCCCCceehh--hH
Confidence 0 0011 1468999999999999999888888776 256899999999998744 46
Q ss_pred HHHHHHHHHHHHHhC
Q 004067 762 IYMEERIWEFIERTL 776 (776)
Q Consensus 762 ~~~~~~~~~fl~~~l 776 (776)
.++.+.+.+||.++|
T Consensus 202 ~~~~~~i~~~l~~~l 216 (220)
T 2fuk_A 202 IDLRGALQHGVRRWL 216 (220)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 788999999998875
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=200.51 Aligned_cols=216 Identities=18% Similarity=0.133 Sum_probs=153.9
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCCCchhhhhhhhhcc
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNC 614 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~~~~~~~~~~~~~~ 614 (776)
.+.+++|.|+.. ++.|+||++|||+....... .+..++..++. .||.|+++|||+.++...
T Consensus 66 ~i~~~~~~p~~~----~~~p~vv~~HGGg~~~g~~~----~~~~~~~~la~~~g~~vv~~dyr~~p~~~~---------- 127 (322)
T 3fak_A 66 GCAAEWVRAPGC----QAGKAILYLHGGGYVMGSIN----THRSMVGEISRASQAAALLLDYRLAPEHPF---------- 127 (322)
T ss_dssp TEEEEEEECTTC----CTTCEEEEECCSTTTSCCHH----HHHHHHHHHHHHHTSEEEEECCCCTTTSCT----------
T ss_pred CeEEEEEeCCCC----CCccEEEEEcCCccccCChH----HHHHHHHHHHHhcCCEEEEEeCCCCCCCCC----------
Confidence 489999999763 46799999999764322111 22334555654 699999999998764431
Q ss_pred CCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCc----eEEEEEcCCCCCcccccccccc------
Q 004067 615 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV----FQCAVSGAPVTSWDGYDTFYTE------ 684 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~----~~~~v~~~~~~~~~~~~~~~~~------ 684 (776)
...++|+.++++++.++ .+|.++|+|+|+|+||++|+.++.+.++. ++++++.+|+.++......+..
T Consensus 128 -~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~ 205 (322)
T 3fak_A 128 -PAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADP 205 (322)
T ss_dssp -THHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHHTTTTCC
T ss_pred -CcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHHhCccCc
Confidence 12368999999999988 67899999999999999999999876553 8999999999876432211111
Q ss_pred ------------cccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCC
Q 004067 685 ------------KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 752 (776)
Q Consensus 685 ------------~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 752 (776)
.+.+.... .....+++...-....|+||++|+.|.++ .++..+++++++.++++++++||+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~---~~~~~sp~~~~~~~~pP~li~~g~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~g~~ 280 (322)
T 3fak_A 206 MVAPGGINKMAARYLNGADA---KHPYASPNFANLKGLPPLLIHVGRDEVLL--DDSIKLDAKAKADGVKSTLEIWDDMI 280 (322)
T ss_dssp SCCSSHHHHHHHHHHTTSCT---TCTTTCGGGSCCTTCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETTCC
T ss_pred ccCHHHHHHHHHHhcCCCCC---CCcccCCCcccccCCChHhEEEcCcCccH--HHHHHHHHHHHHcCCCEEEEEeCCce
Confidence 11111100 01112333221122259999999999874 57889999999999999999999999
Q ss_pred CCCCC----CCcHHHHHHHHHHHHHHhC
Q 004067 753 HMPRR----HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 753 H~~~~----~~~~~~~~~~~~~fl~~~l 776 (776)
|.+.. .+...++++.+.+||+++|
T Consensus 281 H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (322)
T 3fak_A 281 HVWHAFHPMLPEGKQAIVRVGEFMREQW 308 (322)
T ss_dssp TTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred eehhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 98732 3446888999999999864
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=197.87 Aligned_cols=233 Identities=18% Similarity=0.149 Sum_probs=165.2
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCc-ccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCV-QLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~-~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
..+.+.+++.+|..+.++++.|++. ++.|+||++||++++ .. . +.. ...+++.||.|+++|+||+|.
T Consensus 55 ~~~~~~~~~~~g~~i~~~~~~P~~~----~~~p~vv~~HG~~~~~~~---~----~~~-~~~l~~~g~~v~~~d~rg~g~ 122 (318)
T 1l7a_A 55 KVYRLTYKSFGNARITGWYAVPDKE----GPHPAIVKYHGYNASYDG---E----IHE-MVNWALHGYATFGMLVRGQQR 122 (318)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEESSC----SCEEEEEEECCTTCCSGG---G----HHH-HHHHHHTTCEEEEECCTTTSS
T ss_pred EEEEEEEEccCCCEEEEEEEeeCCC----CCccEEEEEcCCCCCCCC---C----ccc-ccchhhCCcEEEEecCCCCCC
Confidence 4677888888899999999999762 578999999998765 33 1 222 336788899999999999998
Q ss_pred Cchhhhhhh-----hhccC---------CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEE
Q 004067 602 RGLKFEASI-----KHNCG---------RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV 667 (776)
Q Consensus 602 ~~~~~~~~~-----~~~~~---------~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v 667 (776)
+...+.... ....+ .....|+.++++++.++..+|.++|+++|||+||.+++.++..+|+ +.+++
T Consensus 123 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v 201 (318)
T 1l7a_A 123 SEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAV 201 (318)
T ss_dssp SCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEE
T ss_pred CCCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEE
Confidence 865421100 00000 1237899999999999877888999999999999999999999887 56666
Q ss_pred EcCCCCC-ccccccc-----cc--cccc---CCCCCC---ccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHH
Q 004067 668 SGAPVTS-WDGYDTF-----YT--EKYM---GLPSED---PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733 (776)
Q Consensus 668 ~~~~~~~-~~~~~~~-----~~--~~~~---~~~~~~---~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~ 733 (776)
+.+|... +...... +. ..++ ..+... .......++...+.++++|+|+++|+.|..+++..+..++
T Consensus 202 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~ 281 (318)
T 1l7a_A 202 ADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAY 281 (318)
T ss_dssp EESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHH
T ss_pred ecCCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCCCCCcccHHHHH
Confidence 6777533 2111000 00 0000 000000 0111223456677888999999999999999999998888
Q ss_pred HHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 734 NALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+.+. .+++++++++++|.. ..+..+.+.+||.++|
T Consensus 282 ~~l~---~~~~~~~~~~~~H~~-----~~~~~~~~~~fl~~~l 316 (318)
T 1l7a_A 282 NHLE---TKKELKVYRYFGHEY-----IPAFQTEKLAFFKQIL 316 (318)
T ss_dssp HHCC---SSEEEEEETTCCSSC-----CHHHHHHHHHHHHHHH
T ss_pred hhcC---CCeeEEEccCCCCCC-----cchhHHHHHHHHHHHh
Confidence 8773 358999999999983 3466889999998864
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=213.23 Aligned_cols=270 Identities=11% Similarity=0.036 Sum_probs=185.8
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..++|||||++|||.+..++ ++.+|++++++.++++.+.. ..+..+.|||
T Consensus 25 ~~~~~~~DG~~la~~s~~~g----~~~lw~~~~g~~~~lt~~~~-----------------------~~~~~~~~sp--- 74 (582)
T 3o4h_A 25 YSLQGVVDGDKLLVVGFSEG----SVNAYLYDGGETVKLNREPI-----------------------NSVLDPHYGV--- 74 (582)
T ss_dssp EEEEEEETTTEEEEEEEETT----EEEEEEEETTEEEECCSSCC-----------------------SEECEECTTC---
T ss_pred heeecCCCCCeEEEEEccCC----ceeEEEEcCCCcEeeecccc-----------------------cccccccCCC---
Confidence 68899999999999987543 34455568999999986432 3577899999
Q ss_pred CceEEEEeCC-----C--cEEEEeC--CCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEe
Q 004067 138 KKKIIMVPLP-----D--GIYFQDL--SCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLT 206 (776)
Q Consensus 138 dg~~l~~~~~-----~--~l~~~d~--~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt 206 (776)
| + ++|..+ . .||.+++ .++.. .++.... .....|||||+.++|++. +.+.+|++++|+.++++
T Consensus 75 d-~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~ 148 (582)
T 3o4h_A 75 G-R-VILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAVKP--MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA 148 (582)
T ss_dssp S-E-EEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTSCS--BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred C-e-EEEEeccCCCCcceEEEEEeccCCCccc--cccCCCC--ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee
Confidence 9 4 555422 2 5888888 55544 4554443 446799999999888864 46778999999998887
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
..+. ..++|||||+.|++.+.+.+. ...
T Consensus 149 ~~~~--------------------~~~~~spDG~~la~~~~~~~~--------------------------------~~~ 176 (582)
T 3o4h_A 149 RLPG--------------------FGFVSDIRGDLIAGLGFFGGG--------------------------------RVS 176 (582)
T ss_dssp EESS--------------------CEEEEEEETTEEEEEEEEETT--------------------------------EEE
T ss_pred cCCC--------------------ceEEECCCCCEEEEEEEcCCC--------------------------------CeE
Confidence 6442 267899999999988754321 145
Q ss_pred EEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecc
Q 004067 287 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 366 (776)
Q Consensus 287 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 366 (776)
|++||+++++.+++ ..+...+..++|||||+.|+ .+.+. +...|++||+++|+.+ ++..... . ...
T Consensus 177 i~~~d~~~g~~~~l---------~~~~~~~~~~~~SpDG~~l~-~~~~~-~~~~i~~~d~~~~~~~-~~~~~~~-~-~~~ 242 (582)
T 3o4h_A 177 LFTSNLSSGGLRVF---------DSGEGSFSSASISPGMKVTA-GLETA-REARLVTVDPRDGSVE-DLELPSK-D-FSS 242 (582)
T ss_dssp EEEEETTTCCCEEE---------CCSSCEEEEEEECTTSCEEE-EEECS-SCEEEEEECTTTCCEE-ECCCSCS-H-HHH
T ss_pred EEEEcCCCCCceEe---------ecCCCccccceECCCCCEEE-EccCC-CeeEEEEEcCCCCcEE-EccCCCc-C-hhh
Confidence 99999999998877 45566789999999999888 43333 4568999999999988 4433211 1 011
Q ss_pred cc--------cccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 367 DC--------FTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 367 ~~--------~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
.. |+| ++ .+++++..+|. +.+|+. | +..+... ..+..+ .|+ ||+.++..+....+
T Consensus 243 ~~~~~~~~~~~sp-------dg-~~~~~~~~~g~--~~l~~~-g-~~~~~~~--~~v~~~-~~s-dg~~l~~~s~~~~p- 305 (582)
T 3o4h_A 243 YRPTAITWLGYLP-------DG-RLAVVARREGR--SAVFID-G-ERVEAPQ--GNHGRV-VLW-RGKLVTSHTSLSTP- 305 (582)
T ss_dssp HCCSEEEEEEECT-------TS-CEEEEEEETTE--EEEEET-T-EEECCCS--SEEEEE-EEE-TTEEEEEEEETTEE-
T ss_pred hhhccccceeEcC-------CC-cEEEEEEcCCc--EEEEEE-C-CeeccCC--CceEEE-Eec-CCEEEEEEcCCCCC-
Confidence 11 322 23 68888888884 444555 4 4333221 234444 488 88877665655544
Q ss_pred eeeEEEEEe
Q 004067 439 ESHLYCAKL 447 (776)
Q Consensus 439 ~~~l~~~~~ 447 (776)
..+|.+++
T Consensus 306 -~~l~~~d~ 313 (582)
T 3o4h_A 306 -PRIVSLPS 313 (582)
T ss_dssp -EEEEEETT
T ss_pred -CeEEEEcC
Confidence 67888876
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=202.37 Aligned_cols=237 Identities=19% Similarity=0.211 Sum_probs=166.7
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+.+.+.||..+.++++.|.+. ..++.|+||++||+++... .|. ..++..|+++||.|+++|+||+|.+
T Consensus 67 ~~~~~~~~~~~g~~~~~~~~~p~~~--~~~~~p~vv~~hG~~~~~~---~~~---~~~~~~l~~~G~~v~~~d~~g~g~s 138 (367)
T 2hdw_A 67 EHRKVTFANRYGITLAADLYLPKNR--GGDRLPAIVIGGPFGAVKE---QSS---GLYAQTMAERGFVTLAFDPSYTGES 138 (367)
T ss_dssp EEEEEEEECTTSCEEEEEEEEESSC--CSSCEEEEEEECCTTCCTT---SHH---HHHHHHHHHTTCEEEEECCTTSTTS
T ss_pred eeEEEEEecCCCCEEEEEEEeCCCC--CCCCCCEEEEECCCCCcch---hhH---HHHHHHHHHCCCEEEEECCCCcCCC
Confidence 5678889988899999999999762 1257899999999766533 221 1257888999999999999999977
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc-
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF- 681 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~- 681 (776)
....... ........|+.++++++.++..++.++++++|||+||.+++.++.++|+ ++++|+.+|......+...
T Consensus 139 ~~~~~~~---~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-~~~~v~~~p~~~~~~~~~~~ 214 (367)
T 2hdw_A 139 GGQPRNV---ASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKR-VKAVVTSTMYDMTRVMSKGY 214 (367)
T ss_dssp CCSSSSC---CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCCHHHHHHHTT
T ss_pred CCcCccc---cchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCCC-ccEEEEeccccccHHHhhhh
Confidence 5322110 0011247899999999999887788999999999999999999999885 7899988876311000000
Q ss_pred ----------------------------c------c--------------cccc---C-CCC----------CCccchhc
Q 004067 682 ----------------------------Y------T--------------EKYM---G-LPS----------EDPVGYEY 699 (776)
Q Consensus 682 ----------------------------~------~--------------~~~~---~-~~~----------~~~~~~~~ 699 (776)
+ . +.+. + .+. .....+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (367)
T 2hdw_A 215 NDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMN 294 (367)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcC
Confidence 0 0 0000 0 000 00112233
Q ss_pred CChhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 700 SSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 700 ~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
.++...+.+++ +|+|+++|++|. ++..+.++++. .+.+++++++++++|.+........+.+.+.+||+++|
T Consensus 295 ~~~~~~~~~i~~~PvLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 295 MPILTYIKEISPRPILLIHGERAH--SRYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIPFDRIAGFFDEHL 367 (367)
T ss_dssp SCSCTTGGGGTTSCEEEEEETTCT--THHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSCHHHHHHHHHHHC
T ss_pred CChhHhHHhhcCCceEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHHHHHHHHHHHhhC
Confidence 45566788888 999999999998 77777777665 57889999999999974221111126799999999886
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=199.57 Aligned_cols=241 Identities=15% Similarity=0.105 Sum_probs=160.3
Q ss_pred ceEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECC--CCCC
Q 004067 524 PDIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--RGTA 600 (776)
Q Consensus 524 ~~~~~~~~-~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--rg~g 600 (776)
.+.+.+.+ ..|..+.+.+|.|+... ++++|+||++||+++... .|.. ....++.++++||+|+++|+ ||+|
T Consensus 16 ~~~~~~~s~~~~~~~~~~v~~P~~~~--~~~~p~vv~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~vv~~d~~~rG~~ 89 (282)
T 3fcx_A 16 QKVFEHDSVELNCKMKFAVYLPPKAE--TGKCPALYWLSGLTCTEQ---NFIS-KSGYHQSASEHGLVVIAPDTSPRGCN 89 (282)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG--TSCEEEEEEECCTTCCSH---HHHH-HSCCHHHHHHHTCEEEEECSCSSCCC
T ss_pred EEEEEEEchhcCCeeEEEEEcCCCCC--CCCCCEEEEEcCCCCCcc---chhh-cchHHHHhhcCCeEEEEeccccCccc
Confidence 34455554 46888999999998731 258999999999876543 2211 11225778899999999999 8777
Q ss_pred CCchhhhh------hhhhccCC-------ccHHHHH-HHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 601 RRGLKFEA------SIKHNCGR-------IDAEDQL-TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 601 ~~~~~~~~------~~~~~~~~-------~~~~D~~-~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
.++..... ..+..... ....++. ..++++.++..+|.++|+|+||||||++|+.++.++|++|+++
T Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 169 (282)
T 3fcx_A 90 IKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSV 169 (282)
T ss_dssp C--------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCE
T ss_pred cccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEE
Confidence 64432000 00000000 1122233 4445555455578899999999999999999999999999999
Q ss_pred EEcCCCCCcccccc--cccccccCCCCCCccchhcCChhhhhccC---CCcEEEEecCCCCccChHH--HHHHHHHHHHC
Q 004067 667 VSGAPVTSWDGYDT--FYTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHFRH--TARLINALVAA 739 (776)
Q Consensus 667 v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~~~--~~~~~~~l~~~ 739 (776)
++.+|+.+...... .....+++.. ...+...++...+.++ +.|+|++||+.|.+++... +.++.+++++.
T Consensus 170 v~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~~l~~~ 246 (282)
T 3fcx_A 170 SAFAPICNPVLCPWGKKAFSGYLGTD---QSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAACTEK 246 (282)
T ss_dssp EEESCCCCGGGSHHHHHHHHHHHC------CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHHHHHHHT
T ss_pred EEeCCccCcccCchhHHHHHHhcCCc---hhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHHHHHHHc
Confidence 99999876432110 0011122221 2334455555555444 7899999999999986654 56899999999
Q ss_pred CCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 740 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 740 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+.+++++++|+++|.+. ....+....++|+.++|
T Consensus 247 g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l 280 (282)
T 3fcx_A 247 KIPVVFRLQEDYDHSYY---FIATFITDHIRHHAKYL 280 (282)
T ss_dssp TCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcCHH---HHHhhhHHHHHHHHHhh
Confidence 99999999999999863 24556677788888775
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=215.25 Aligned_cols=244 Identities=15% Similarity=0.233 Sum_probs=175.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccc-cch-hhh---HHHHhCCcEEEEECCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN-TVD-MRA---QYLRSKGILVWKLDNRG 598 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~-~~~-~~~---~~l~~~G~~v~~~d~rg 598 (776)
.+.+.++..||..|+++++.|++. +++|+||++||..... ....+.. .+. .++ +.|+++||+|+.+|+||
T Consensus 25 ~~~v~i~~~DG~~L~~~~~~P~~~----~~~P~vl~~hgyg~~~-~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D~RG 99 (615)
T 1mpx_A 25 KREVMIPMRDGVKLHTVIVLPKGA----KNAPIVLTRTPYDASG-RTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRG 99 (615)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHH-HTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTT
T ss_pred EEEEEEECCCCCEEEEEEEeCCCC----CCeeEEEEEcCCCCcc-ccccccccccccccchhHHHHHhCCeEEEEECCCC
Confidence 467889999999999999999763 5789999999865432 0000110 110 112 78999999999999999
Q ss_pred CCCCchhhhhhh-----hhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 599 TARRGLKFEASI-----KHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 599 ~g~~~~~~~~~~-----~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
+|+|+..+.... +..++..+.+|+.++++++.++ ++.+ .+|+++|+||||++++.+++.+++.++|+|+.+|+
T Consensus 100 ~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~~~~ 178 (615)
T 1mpx_A 100 KYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPM 178 (615)
T ss_dssp STTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCC
T ss_pred CCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEecCCc
Confidence 999876653321 0112226789999999999998 6665 59999999999999999999889999999999999
Q ss_pred CC-cc-c-c-c-ccc----cccc------------------------------------------------cCCCCCCcc
Q 004067 673 TS-WD-G-Y-D-TFY----TEKY------------------------------------------------MGLPSEDPV 695 (776)
Q Consensus 673 ~~-~~-~-~-~-~~~----~~~~------------------------------------------------~~~~~~~~~ 695 (776)
.+ +. . + . ..+ ..++ +..+ ...+
T Consensus 179 ~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~d~ 257 (615)
T 1mpx_A 179 IDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHA-AYDA 257 (615)
T ss_dssp CCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTC-SSCH
T ss_pred cccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCC-CcCh
Confidence 88 43 1 1 0 000 0000 0000 1123
Q ss_pred chhcCChhhhhcc--CCCcEEEEecCCCCccChHHHHHHHHHHHHCCC---CeEEEEecCCCCCC-CC----C-------
Q 004067 696 GYEYSSVMHHVHK--MKGKLLLVHGMIDENVHFRHTARLINALVAARK---PYEILIFPDERHMP-RR----H------- 758 (776)
Q Consensus 696 ~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~---~~~~~~~~~~~H~~-~~----~------- 758 (776)
.|...++..++.+ |++|+|++||..|.. +..++.+++++|++++. ..++++.|. +|.. .. .
T Consensus 258 ~w~~~Sp~~~~~~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~ 335 (615)
T 1mpx_A 258 FWQEQALDKVMARTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEG 335 (615)
T ss_dssp HHHTTCHHHHHHTSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSS
T ss_pred hhhhcChhhhhhccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccccccCccccCc
Confidence 4566788888999 999999999999997 77889999999998864 388888887 6864 10 0
Q ss_pred C-cHHHHHHHHHHHHHHhC
Q 004067 759 R-DRIYMEERIWEFIERTL 776 (776)
Q Consensus 759 ~-~~~~~~~~~~~fl~~~l 776 (776)
. ......+.+.+||++||
T Consensus 336 ~~~~~~~~~~~~~wfd~~L 354 (615)
T 1mpx_A 336 DTARQFRHDVLRPFFDQYL 354 (615)
T ss_dssp CHHHHHHHHTHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHh
Confidence 1 11223678899999886
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-21 Score=197.19 Aligned_cols=233 Identities=16% Similarity=0.077 Sum_probs=163.7
Q ss_pred CceEEEEEcCCCc-EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCC
Q 004067 523 PPDIVQIQANDGT-VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTA 600 (776)
Q Consensus 523 ~~~~~~~~~~dg~-~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g 600 (776)
..+.+.+...+|. .+.+++|.|+... ++.|+||++||++....... .+...+..|++ .||.|+++|+||+|
T Consensus 50 ~~~~~~i~~~~g~~~l~~~~~~P~~~~---~~~p~vv~~HGgg~~~g~~~----~~~~~~~~la~~~G~~Vv~~d~rg~~ 122 (323)
T 1lzl_A 50 SLRELSAPGLDGDPEVKIRFVTPDNTA---GPVPVLLWIHGGGFAIGTAE----SSDPFCVEVARELGFAVANVEYRLAP 122 (323)
T ss_dssp EEEEEEECCSTTCCCEEEEEEEESSCC---SCEEEEEEECCSTTTSCCGG----GGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred eEEEEEecCCCCCceeEEEEEecCCCC---CCCcEEEEECCCccccCChh----hhHHHHHHHHHhcCcEEEEecCCCCC
Confidence 4677888887886 7999999997531 57899999999863211111 23344666776 59999999999998
Q ss_pred CCchhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCCC
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVT 673 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~~ 673 (776)
.+... ....|+.++++++.+. ..+|.++|+|+||||||.+++.++.++++ .++++++.+|..
T Consensus 123 ~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~ 191 (323)
T 1lzl_A 123 ETTFP-----------GPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL 191 (323)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred CCCCC-----------chHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCcc
Confidence 76421 1267888899998874 34677899999999999999999987655 489999999987
Q ss_pred Cccccccc-----------------ccccccCCCCCC---ccchhcCChhhhhccCC--CcEEEEecCCCCccChHHHHH
Q 004067 674 SWDGYDTF-----------------YTEKYMGLPSED---PVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTAR 731 (776)
Q Consensus 674 ~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~ 731 (776)
+....... +...+++..... .......++... ..+. +|+|+++|+.|..+ .++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~~~--~~~~~ 268 (323)
T 1lzl_A 192 DDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDPLR--DEGIE 268 (323)
T ss_dssp CTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCTTH--HHHHH
T ss_pred CCCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccC-cccCCCChhheEECCcCCch--HHHHH
Confidence 65421100 001111211100 011111223221 1232 69999999999987 47789
Q ss_pred HHHHHHHCCCCeEEEEecCCCCCCCCC---CcHHHHHHHHHHHHHHhC
Q 004067 732 LINALVAARKPYEILIFPDERHMPRRH---RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 732 ~~~~l~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~~fl~~~l 776 (776)
+++++++.+.+++++++++++|.+... +...++.+.+.+||++++
T Consensus 269 ~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l 316 (323)
T 1lzl_A 269 YALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGL 316 (323)
T ss_dssp HHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999986322 236788999999999875
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=202.89 Aligned_cols=237 Identities=12% Similarity=0.094 Sum_probs=158.6
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~ 601 (776)
..+.+.+.. +..+.+.+|.|+......++.|+||++||++........ ..|..++..|+ +.||.|+++|+||++.
T Consensus 54 ~~~~v~~~~--~~~~~~~~~~P~~~~~~~~~~p~vv~~HGgg~~~~~~~~--~~~~~~~~~la~~~g~~vv~~d~rg~~~ 129 (338)
T 2o7r_A 54 LTKDLALNP--LHNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAAS--TIFHDFCCEMAVHAGVVIASVDYRLAPE 129 (338)
T ss_dssp EEEEEEEET--TTTEEEEEEEEGGGGGSSCCEEEEEEECCSTTTSCCTTB--HHHHHHHHHHHHHHTCEEEEEECCCTTT
T ss_pred EEEEEEecC--CCCeEEEEEeCCCCCcCCCCceEEEEEcCCcCcCCCCCc--hhHHHHHHHHHHHCCcEEEEecCCCCCC
Confidence 456677765 455788888886530112578999999997643221111 11344567777 7899999999999765
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcC------CCCCCcEEEEeechHHHHHHHHHhhCCC--------ceEEEE
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG------LAKVGHIGLYGWSYGGYLSAITLARFPD--------VFQCAV 667 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~------~id~~~i~l~G~S~GG~~a~~~a~~~~~--------~~~~~v 667 (776)
+.. ...++|+.++++++.++. .+|.++++|+||||||.+++.++.++|+ +++++|
T Consensus 130 ~~~-----------~~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~v 198 (338)
T 2o7r_A 130 HRL-----------PAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLV 198 (338)
T ss_dssp TCT-----------THHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEE
T ss_pred CCC-----------chHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEE
Confidence 432 123789999999998762 2567899999999999999999998887 899999
Q ss_pred EcCCCCCccccccc-----------------ccccccCC--CCCCc--cchhcCC---hhhhhccCCCcEEEEecCCCCc
Q 004067 668 SGAPVTSWDGYDTF-----------------YTEKYMGL--PSEDP--VGYEYSS---VMHHVHKMKGKLLLVHGMIDEN 723 (776)
Q Consensus 668 ~~~~~~~~~~~~~~-----------------~~~~~~~~--~~~~~--~~~~~~~---~~~~~~~i~~P~lii~G~~D~~ 723 (776)
+.+|+.+....... +...+... ..... ..+.... .+..+.++.+|+|+++|++|.+
T Consensus 199 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~ 278 (338)
T 2o7r_A 199 LDEPGFGGSKRTGSELRLANDSRLPTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPM 278 (338)
T ss_dssp EESCCCCCSSCCHHHHHTTTCSSSCHHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTSTT
T ss_pred EECCccCCCcCChhhhccCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCCcc
Confidence 99988654321000 00001100 00000 0001111 1233444566999999999998
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCC--CCcHHHHHHHHHHHHHHhC
Q 004067 724 VHFRHTARLINALVAARKPYEILIFPDERHMPRR--HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 724 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~~~fl~~~l 776 (776)
++ ...++++++++.+.+++++++++++|.+.. ++...++.+.+.+||.+++
T Consensus 279 ~~--~~~~~~~~l~~~~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~ 331 (338)
T 2o7r_A 279 ID--RQMELAERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSC 331 (338)
T ss_dssp HH--HHHHHHHHHHHTTCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC---
T ss_pred hH--HHHHHHHHHHHCCCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhc
Confidence 86 457788999988999999999999998732 2334789999999997753
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=200.61 Aligned_cols=225 Identities=13% Similarity=0.120 Sum_probs=158.8
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchh
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 605 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~ 605 (776)
...+... +..+...+|.|.... ++.|+||++|||+....... .+..++..|+++||.|+++|+|+++.....
T Consensus 58 ~~~i~y~-~~~~~~~~~~p~~~~---~~~p~vv~~HGgg~~~~~~~----~~~~~~~~l~~~G~~v~~~d~r~~~~~~~~ 129 (303)
T 4e15_A 58 VDHLRYG-EGRQLVDVFYSEKTT---NQAPLFVFVHGGYWQEMDMS----MSCSIVGPLVRRGYRVAVMDYNLCPQVTLE 129 (303)
T ss_dssp EEEEECS-STTCEEEEEECTTCC---TTCCEEEEECCSTTTSCCGG----GSCTTHHHHHHTTCEEEEECCCCTTTSCHH
T ss_pred eeeeccC-CCCcEEEEEecCCCC---CCCCEEEEECCCcCcCCChh----HHHHHHHHHHhCCCEEEEecCCCCCCCChh
Confidence 3344433 444677788886432 57899999999764332111 233457889999999999999998765421
Q ss_pred hhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhCC-------CceEEEEEcCCCCCccc
Q 004067 606 FEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFP-------DVFQCAVSGAPVTSWDG 677 (776)
Q Consensus 606 ~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~~-------~~~~~~v~~~~~~~~~~ 677 (776)
....|+.++++++.+. ...+.++|+|+||||||++++.++.+.+ +.++++++.+|+.++..
T Consensus 130 -----------~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~ 198 (303)
T 4e15_A 130 -----------QLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRE 198 (303)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHH
T ss_pred -----------HHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHh
Confidence 1267889999999873 2235789999999999999999998654 27999999999988754
Q ss_pred ccc---cccccccCCCCCCccchhcCChh-hhhccC----CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEec
Q 004067 678 YDT---FYTEKYMGLPSEDPVGYEYSSVM-HHVHKM----KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 749 (776)
Q Consensus 678 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i----~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 749 (776)
... .+....++.. ...+...+++ ..+..+ ++|+|++||++|..+++.++.++++++++.+.++++++++
T Consensus 199 ~~~~~~~~~~~~~~~~---~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 275 (303)
T 4e15_A 199 LSNLESVNPKNILGLN---ERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFK 275 (303)
T ss_dssp HHTCTTTSGGGTTCCC---TTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hhcccccchhhhhcCC---HHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCceEEEEeC
Confidence 432 2222222222 2334455555 455555 8999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 750 DERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 750 ~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++|.. ..+........+.+||.
T Consensus 276 g~~H~~-~~~~~~~~~~~l~~~l~ 298 (303)
T 4e15_A 276 GYDHFD-IIEETAIDDSDVSRFLR 298 (303)
T ss_dssp EEETTH-HHHGGGSTTSHHHHHHH
T ss_pred CCCchH-HHHHHhCCCcHHHHHHH
Confidence 999953 22233333344555543
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-21 Score=196.77 Aligned_cols=231 Identities=17% Similarity=0.148 Sum_probs=162.7
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhC-CcEEEEECCCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-GILVWKLDNRGT 599 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rg~ 599 (776)
....+.+.++..+| .+.+++|.|... .+.|+||++||++....... .+..++..|++. ||.|+++|+||+
T Consensus 45 ~~~~~~~~i~~~~g-~i~~~~~~p~~~----~~~p~vv~~HGgg~~~g~~~----~~~~~~~~la~~~g~~v~~~d~rg~ 115 (311)
T 2c7b_A 45 IAETRDVHIPVSGG-SIRARVYFPKKA----AGLPAVLYYHGGGFVFGSIE----THDHICRRLSRLSDSVVVSVDYRLA 115 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSSC----SSEEEEEEECCSTTTSCCTG----GGHHHHHHHHHHHTCEEEEECCCCT
T ss_pred cceEEEEEecCCCC-cEEEEEEecCCC----CCCcEEEEECCCcccCCChh----hhHHHHHHHHHhcCCEEEEecCCCC
Confidence 44677888988777 899999999763 35799999999762111111 234456777765 999999999999
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC---CCCCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCC
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPV 672 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~ 672 (776)
|.+... ....|+.++++++.+.. .+|.++++|+||||||.+++.++.++++ .++++++.+|.
T Consensus 116 g~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~ 184 (311)
T 2c7b_A 116 PEYKFP-----------TAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPV 184 (311)
T ss_dssp TTSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCC
T ss_pred CCCCCC-----------ccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCc
Confidence 876422 12678888888888752 4577899999999999999999987665 48999999998
Q ss_pred CCccccc----c----------------cccccccCCCCCCccchhcCChhh-hhccCCCcEEEEecCCCCccChHHHHH
Q 004067 673 TSWDGYD----T----------------FYTEKYMGLPSEDPVGYEYSSVMH-HVHKMKGKLLLVHGMIDENVHFRHTAR 731 (776)
Q Consensus 673 ~~~~~~~----~----------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~P~lii~G~~D~~v~~~~~~~ 731 (776)
.++.... . .+.+.+...+.. ......+++. .+..+ .|+|+++|+.|.+++ ....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~~--~~~~ 259 (311)
T 2c7b_A 185 VNMTGVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEE--AYDFKASPLLADLGGL-PPALVVTAEYDPLRD--EGEL 259 (311)
T ss_dssp CCCSSCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTG--GGSTTTCGGGSCCTTC-CCEEEEEETTCTTHH--HHHH
T ss_pred cCCccccccCCccHHHhccCCCCHHHHHHHHHHhCCCCcc--ccCcccCcccccccCC-CcceEEEcCCCCchH--HHHH
Confidence 7731100 0 001111111110 0001112222 22333 399999999999885 5567
Q ss_pred HHHHHHHCCCCeEEEEecCCCCCCCC----CCcHHHHHHHHHHHHHHhC
Q 004067 732 LINALVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 732 ~~~~l~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~fl~~~l 776 (776)
+++.++..+.+++++++++++|.+.. .+...++.+.+.+||++++
T Consensus 260 ~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (311)
T 2c7b_A 260 YAYKMKASGSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGL 308 (311)
T ss_dssp HHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHh
Confidence 88888889999999999999998742 3456788999999999875
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=197.65 Aligned_cols=233 Identities=17% Similarity=0.158 Sum_probs=164.5
Q ss_pred ceEE-EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 524 PDIV-QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 524 ~~~~-~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
.+.+ .+.+.+|..+.++++.|.+ .+.|+||++||.+++.. .|..++..|+++||.|+++|+||+|.+
T Consensus 34 ~~~~~~~~~~dg~~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S 101 (342)
T 3hju_A 34 YQDLPHLVNADGQYLFCRYWKPTG-----TPKALIFVSHGAGEHSG-------RYEELARMLMGLDLLVFAHDHVGHGQS 101 (342)
T ss_dssp TTSSCEEECTTSCEEEEEEECCSS-----CCSEEEEEECCTTCCGG-------GGHHHHHHHHTTTEEEEEECCTTSTTS
T ss_pred cccCceEEccCCeEEEEEEeCCCC-----CCCcEEEEECCCCcccc-------hHHHHHHHHHhCCCeEEEEcCCCCcCC
Confidence 3344 6788899999999999875 35699999999876644 345568889999999999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc--
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-- 680 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~-- 680 (776)
...... ........+|+.++++++..+. +..+++|+||||||++++.++.++|++++++|+.+|.........
T Consensus 102 ~~~~~~---~~~~~~~~~d~~~~l~~l~~~~--~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 176 (342)
T 3hju_A 102 EGERMV---VSDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATT 176 (342)
T ss_dssp CSSTTC---CSCTHHHHHHHHHHHHHHHHHS--TTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSH
T ss_pred CCcCCC---cCcHHHHHHHHHHHHHHHHHhC--CCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhH
Confidence 643111 0011123678999999988763 556999999999999999999999999999999998765321100
Q ss_pred -----------cccc--------ccc-----------CCCCCCc----cch------hcCChhhhhccCCCcEEEEecCC
Q 004067 681 -----------FYTE--------KYM-----------GLPSEDP----VGY------EYSSVMHHVHKMKGKLLLVHGMI 720 (776)
Q Consensus 681 -----------~~~~--------~~~-----------~~~~~~~----~~~------~~~~~~~~~~~i~~P~lii~G~~ 720 (776)
.... .+. ..+.... ..+ ...+....+.++++|+|+++|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~ 256 (342)
T 3hju_A 177 FKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSA 256 (342)
T ss_dssp HHHHHHHHHHHHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETT
T ss_pred HHHHHHHHHHHhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcCEEEEEeCC
Confidence 0000 000 0000000 000 00011245678899999999999
Q ss_pred CCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC--CcHHHHHHHHHHHHHHh
Q 004067 721 DENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERT 775 (776)
Q Consensus 721 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~~~fl~~~ 775 (776)
|..+++..+..+++.+. +.+++++++++++|.+... +...++...+.+||.++
T Consensus 257 D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~ 311 (342)
T 3hju_A 257 DRLCDSKGAYLLMELAK--SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQR 311 (342)
T ss_dssp CSSSCHHHHHHHHHHCC--CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHcC--CCCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcc
Confidence 99999998988888763 2368999999999987332 22456777899999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-19 Score=185.16 Aligned_cols=319 Identities=10% Similarity=0.018 Sum_probs=211.0
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCC-CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT-CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+..++|||||+.+++....+. +..+.... ........+ ...+....|+|
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~h------------------------~~~v~~~~~~~ 61 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDA-----LIGPGIPRHARQINTLNH------------------------GEVVCAVTISN 61 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTS-----SSSTTCCSEEEEEEEECC------------------------SSCCCEEEECS
T ss_pred ceeEEEECCCCCEEEeecCCCc-----EeccccCCccccceeccC------------------------CCceEEEEEec
Confidence 3578999999999996654332 33322222 222233332 24688999999
Q ss_pred cCCCceEEEEeCCCcEEEEeCCCCccceecCC----CCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCC
Q 004067 135 TSSKKKIIMVPLPDGIYFQDLSCSKPELKLSS----SSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 135 ~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~----~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~ 209 (776)
||+.|+...++.|.+||+.+++....+.. .....+..+.|+|||+.|+.... +.|.+|++.+++........
T Consensus 62 ---~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 138 (337)
T 1gxr_A 62 ---PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp ---SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred ---CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence 99999999899999999988754312211 22334788999999999998875 57999999988743322111
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
.. ...+..+.|+||++.|+....+ ..|++
T Consensus 139 ~~---------------~~~i~~~~~~~~~~~l~~~~~d------------------------------------g~v~~ 167 (337)
T 1gxr_A 139 SS---------------APACYALAISPDSKVCFSCCSD------------------------------------GNIAV 167 (337)
T ss_dssp CS---------------SSCEEEEEECTTSSEEEEEETT------------------------------------SCEEE
T ss_pred cC---------------CCceEEEEECCCCCEEEEEeCC------------------------------------CcEEE
Confidence 10 0114478899999988876633 23789
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccccc
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCF 369 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 369 (776)
||+.+++....- ..+...+..+.|+|||+.++... .+..|++||+.+++............. -.|
T Consensus 168 ~d~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~v~~---~~~ 232 (337)
T 1gxr_A 168 WDLHNQTLVRQF--------QGHTDGASCIDISNDGTKLWTGG----LDNTVRSWDLREGRQLQQHDFTSQIFS---LGY 232 (337)
T ss_dssp EETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEEEEECSSCEEE---EEE
T ss_pred EeCCCCceeeee--------ecccCceEEEEECCCCCEEEEEe----cCCcEEEEECCCCceEeeecCCCceEE---EEE
Confidence 999988755431 34566789999999999887665 455799999998876655544333211 113
Q ss_pred ccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCC
Q 004067 370 TPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP 449 (776)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~ 449 (776)
+| ++.++++...+| .|++|++.+++...+..+...+..+. |+++|+.++..+. ++ .+.+|.+.
T Consensus 233 s~--------~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~-dg--~i~~~~~~--- 295 (337)
T 1gxr_A 233 CP--------TGEWLAVGMESS--NVEVLHVNKPDKYQLHLHESCVLSLK-FAYCGKWFVSTGK-DN--LLNAWRTP--- 295 (337)
T ss_dssp CT--------TSSEEEEEETTS--CEEEEETTSSCEEEECCCSSCEEEEE-ECTTSSEEEEEET-TS--EEEEEETT---
T ss_pred CC--------CCCEEEEEcCCC--cEEEEECCCCCeEEEcCCccceeEEE-ECCCCCEEEEecC-CC--cEEEEECC---
Confidence 23 233555555566 79999999888777777766677665 9999997665543 33 35666554
Q ss_pred CCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 450 DWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 450 ~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
.+. ....+.....+..+.|+||++.|+..... ..|.++++
T Consensus 296 ~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~ 335 (337)
T 1gxr_A 296 YGA----SIFQSKESSSVLSCDISVDDKYIVTGSGD----KKATVYEV 335 (337)
T ss_dssp TCC----EEEEEECSSCEEEEEECTTSCEEEEEETT----SCEEEEEE
T ss_pred CCe----EEEEecCCCcEEEEEECCCCCEEEEecCC----CeEEEEEE
Confidence 232 33344444567788999999988776543 34777764
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=189.64 Aligned_cols=201 Identities=14% Similarity=0.181 Sum_probs=154.6
Q ss_pred CceEEEEEcC--CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 523 PPDIVQIQAN--DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 523 ~~~~~~~~~~--dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
..+.+.++.. ++. ..+.++.|... +.++.|+||++||.++... .+..++..|+++||.|+++|+||+|
T Consensus 24 ~~~~~~~~~~~~~~~-~~~~l~~p~~~--~~~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~g 93 (262)
T 1jfr_A 24 ATSQTSVSSLVASGF-GGGTIYYPTST--ADGTFGAVVISPGFTAYQS-------SIAWLGPRLASQGFVVFTIDTNTTL 93 (262)
T ss_dssp CEEEEEECTTTCSSS-CCEEEEEESCC--TTCCEEEEEEECCTTCCGG-------GTTTHHHHHHTTTCEEEEECCSSTT
T ss_pred CccceEecceeccCC-CceeEEecCCC--CCCCCCEEEEeCCcCCCch-------hHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 3555666654 333 25667777652 2257899999999776543 2344678899999999999999998
Q ss_pred CCchhhhhhhhhccCCccHHHHHHHHHHHHH----cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~----~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
.+... ...|+..+++++.+ ...++.++++++||||||++++.++.++|+ ++++|+.+|...
T Consensus 94 ~~~~~------------~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~-- 158 (262)
T 1jfr_A 94 DQPDS------------RGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT-- 158 (262)
T ss_dssp CCHHH------------HHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS--
T ss_pred CCCch------------hHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc--
Confidence 66421 14578888888887 344577899999999999999999999988 789998877531
Q ss_pred cccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHH-HHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 677 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
...+.+++.|+|+++|++|..+++.. +..+++.+. .+.+++++++++++|.+
T Consensus 159 --------------------------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~H~~ 211 (262)
T 1jfr_A 159 --------------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLP-GSLDKAYLELRGASHFT 211 (262)
T ss_dssp --------------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSC-TTSCEEEEEETTCCTTG
T ss_pred --------------------------cccccccCCCEEEEecCccccCCchhhHHHHHHHhh-cCCCceEEEeCCCCcCC
Confidence 12345677999999999999999998 999999883 34678999999999987
Q ss_pred CCCCcHHHHHHHHHHHHHHhC
Q 004067 756 RRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 756 ~~~~~~~~~~~~~~~fl~~~l 776 (776)
. .+...++.+.+.+||+++|
T Consensus 212 ~-~~~~~~~~~~i~~fl~~~l 231 (262)
T 1jfr_A 212 P-NTSDTTIAKYSISWLKRFI 231 (262)
T ss_dssp G-GSCCHHHHHHHHHHHHHHH
T ss_pred c-ccchHHHHHHHHHHHHHHh
Confidence 3 3455789999999998764
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-20 Score=186.93 Aligned_cols=225 Identities=12% Similarity=0.082 Sum_probs=157.6
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.....+.+.||..+++.++.|... ++.|+||++||++........| ...++..+++. |.|+++|+||++.+.
T Consensus 3 ~~~~~~~~~dg~~l~~~~~~p~~~----~~~~~vv~~HG~~~~~~~~~~~---~~~~~~~l~~~-~~v~~~d~~~~~~~~ 74 (275)
T 3h04_A 3 EIKYKVITKDAFALPYTIIKAKNQ----PTKGVIVYIHGGGLMFGKANDL---SPQYIDILTEH-YDLIQLSYRLLPEVS 74 (275)
T ss_dssp CEEEEEECTTSCEEEEEEECCSSS----SCSEEEEEECCSTTTSCCTTCS---CHHHHHHHTTT-EEEEEECCCCTTTSC
T ss_pred ceEEEEecCCcEEEEEEEEccCCC----CCCCEEEEEECCcccCCchhhh---HHHHHHHHHhC-ceEEeeccccCCccc
Confidence 356778888999999999998753 4679999999977322211122 12456777777 999999999987654
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc----
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---- 679 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~---- 679 (776)
.. ...+|+.++++++.++ ++.++++|+||||||.+++.++.+ +.++++|+.+|..+.....
T Consensus 75 ~~-----------~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~ 139 (275)
T 3h04_A 75 LD-----------CIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTT 139 (275)
T ss_dssp HH-----------HHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSC
T ss_pred cc-----------hhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccc
Confidence 21 1267899999999887 366899999999999999999998 7789999999987642100
Q ss_pred ------------ccccccccCCC-CC---Cccc----------------h-------hcC-ChhhhhccCCCcEEEEecC
Q 004067 680 ------------TFYTEKYMGLP-SE---DPVG----------------Y-------EYS-SVMHHVHKMKGKLLLVHGM 719 (776)
Q Consensus 680 ------------~~~~~~~~~~~-~~---~~~~----------------~-------~~~-~~~~~~~~i~~P~lii~G~ 719 (776)
......+.... .. .... + ... .....+.+++ |+|+++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~ 218 (275)
T 3h04_A 140 NSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCN 218 (275)
T ss_dssp CHHHHHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEET
T ss_pred cchhhcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecC
Confidence 00000000000 00 0000 0 000 0112235666 99999999
Q ss_pred CCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH--HHHHHHHHHHHHHhC
Q 004067 720 IDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR--IYMEERIWEFIERTL 776 (776)
Q Consensus 720 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~fl~~~l 776 (776)
+|..+++..+..+++.+ .+.+++++++++|.+...... .++.+.+.+||+++|
T Consensus 219 ~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l 273 (275)
T 3h04_A 219 GDYDVPVEESEHIMNHV----PHSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAIT 273 (275)
T ss_dssp TCSSSCTHHHHHHHTTC----SSEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHhc----CCceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHh
Confidence 99999999888887754 567899999999998554443 789999999999874
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=211.58 Aligned_cols=245 Identities=16% Similarity=0.182 Sum_probs=176.5
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccc-cc---hhhh-HHHHhCCcEEEEECCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN-TV---DMRA-QYLRSKGILVWKLDNRG 598 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~-~~---~~~~-~~l~~~G~~v~~~d~rg 598 (776)
.+.+.|++.||..|.+++|.|++. +++|+||++||..........+.. .+ ...+ +.|+++||+|+.+|+||
T Consensus 37 ~~~v~i~~~DG~~L~~~l~~P~~~----~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D~RG 112 (652)
T 2b9v_A 37 KREVMVPMRDGVKLYTVIVIPKNA----RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRG 112 (652)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTT
T ss_pred EEEEEEECCCCcEEEEEEEecCCC----CCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEecCc
Confidence 467889999999999999999763 578999999975433110001110 00 0113 78999999999999999
Q ss_pred CCCCchhhhhhh-----hhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 599 TARRGLKFEASI-----KHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 599 ~g~~~~~~~~~~-----~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
+|+|+..+.... +..++..+.+|+.++++|+.++ ++.+ .+|+++|+||||++++.+++++++.++|+|+.+++
T Consensus 113 ~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~~~~ 191 (652)
T 2b9v_A 113 KYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPM 191 (652)
T ss_dssp STTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEEC
T ss_pred CCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEecccc
Confidence 999987654321 1111236789999999999998 7766 59999999999999999999889999999999988
Q ss_pred CCccc---c--cccc----cccc------------------------------------------------cCCCCCCcc
Q 004067 673 TSWDG---Y--DTFY----TEKY------------------------------------------------MGLPSEDPV 695 (776)
Q Consensus 673 ~~~~~---~--~~~~----~~~~------------------------------------------------~~~~~~~~~ 695 (776)
.++.. + ...+ ..++ +..+ ....
T Consensus 192 ~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~d~ 270 (652)
T 2b9v_A 192 VDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHP-AYDA 270 (652)
T ss_dssp CCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCC-SSSH
T ss_pred cccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCC-CCCh
Confidence 87532 0 0000 0000 0000 0113
Q ss_pred chhcCChhhhhcc--CCCcEEEEecCCCCccChHHHHHHHHHHHHCC--CCeEEEEecCCCCCCCC-----C------C-
Q 004067 696 GYEYSSVMHHVHK--MKGKLLLVHGMIDENVHFRHTARLINALVAAR--KPYEILIFPDERHMPRR-----H------R- 759 (776)
Q Consensus 696 ~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~--~~~~~~~~~~~~H~~~~-----~------~- 759 (776)
.|...++..++.+ |++|+|++||..|.. +..++.+++++|++++ ++.++++.|. +|.... . .
T Consensus 271 yw~~~Sp~~~~~~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~ 348 (652)
T 2b9v_A 271 FWQGQALDKILAQRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGD 348 (652)
T ss_dssp HHHTTCHHHHHHHHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSC
T ss_pred HHhcCChhhhhhcCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccCCccccccc
Confidence 3456688888999 999999999999997 6678899999999988 7888988886 786411 0 0
Q ss_pred -cHHHHHHHHHHHHHHhC
Q 004067 760 -DRIYMEERIWEFIERTL 776 (776)
Q Consensus 760 -~~~~~~~~~~~fl~~~l 776 (776)
......+.+.+||++||
T Consensus 349 ~~~~~~~~~~~~wfd~~L 366 (652)
T 2b9v_A 349 TAHQYRRDVFRPFFDEYL 366 (652)
T ss_dssp HHHHHHHHTHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHh
Confidence 11334688899999886
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=198.97 Aligned_cols=232 Identities=20% Similarity=0.209 Sum_probs=165.1
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhC-CcEEEEECCCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-GILVWKLDNRGT 599 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rg~ 599 (776)
....+.+.++..+| .+.+++|.|... .++.|+||++|||+....... .+..++..|+++ ||.|+++|+||+
T Consensus 45 ~~~~~~~~i~~~~g-~l~~~~~~P~~~---~~~~p~vv~~HGGg~~~g~~~----~~~~~~~~la~~~g~~v~~~d~rg~ 116 (310)
T 2hm7_A 45 VAEVREFDMDLPGR-TLKVRMYRPEGV---EPPYPALVYYHGGSWVVGDLE----THDPVCRVLAKDGRAVVFSVDYRLA 116 (310)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEECTTC---CSSEEEEEEECCSTTTSCCTT----TTHHHHHHHHHHHTSEEEEECCCCT
T ss_pred cceEEEEEeccCCC-eEEEEEEecCCC---CCCCCEEEEECCCccccCChh----HhHHHHHHHHHhcCCEEEEeCCCCC
Confidence 34567888888777 899999999763 157899999999653322112 344557778775 999999999998
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC---CCCCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCC
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPV 672 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~ 672 (776)
+++... ...+|+.++++++.++. .++.++++|+||||||.+++.++.++++ .++++++.+|.
T Consensus 117 ~~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~ 185 (310)
T 2hm7_A 117 PEHKFP-----------AAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPS 185 (310)
T ss_dssp TTSCTT-----------HHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCC
T ss_pred CCCCCC-----------ccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Confidence 876421 12678999999998864 3677899999999999999999987765 68999999998
Q ss_pred CCcc--cccccc-----------------cccccCCCCCCccchhcCChhh--hhccCCCcEEEEecCCCCccChHHHHH
Q 004067 673 TSWD--GYDTFY-----------------TEKYMGLPSEDPVGYEYSSVMH--HVHKMKGKLLLVHGMIDENVHFRHTAR 731 (776)
Q Consensus 673 ~~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~P~lii~G~~D~~v~~~~~~~ 731 (776)
.+.. .....+ ...+...+.. ......++.. .+..+ .|+|+++|+.|..+ .++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~--~~~~~ 260 (310)
T 2hm7_A 186 TGYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEE--LTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR--DVGKL 260 (310)
T ss_dssp CCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGG--GGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--HHHHH
T ss_pred cCCCcccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCc--cCCccCCCCcCccccCC-CCEEEEEecCCCch--HHHHH
Confidence 7654 110000 0011111000 0000112221 12232 39999999999987 57888
Q ss_pred HHHHHHHCCCCeEEEEecCCCCCCCC----CCcHHHHHHHHHHHHHHhC
Q 004067 732 LINALVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 732 ~~~~l~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~fl~~~l 776 (776)
+++++.+.+.+++++++++++|.+.. .+...++.+.+.+||+++|
T Consensus 261 ~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 309 (310)
T 2hm7_A 261 YAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 309 (310)
T ss_dssp HHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999997642 2345788999999998874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-18 Score=196.67 Aligned_cols=310 Identities=15% Similarity=0.096 Sum_probs=219.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|+|||+.|+..+.. ..|.+|+..+...+.+..+. ..+....|+|
T Consensus 265 v~~v~~~~d~~~l~~~~~d-----~~i~~w~~~~~~~~~~~~h~------------------------~~v~~~~~~~-- 313 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHS------------------------SSVWGVAFSP-- 313 (577)
T ss_dssp EEEEEECTTSSEEEEEETT-----SCEEEEETTSCEEEEECCCS------------------------SCEEEEEECT--
T ss_pred EEEEEEcCCCCEEEEEeCC-----CEEEEEeCCCcEEEEEecCC------------------------CCeEEEEECC--
Confidence 4688999999999866552 35999998776666665432 3688899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||+.|+.. .++.|.+||+.+.... .+..... .+..++|+|||+.|+.... +.+.+++..+.....+......
T Consensus 314 -~~~~l~t~~~d~~i~~w~~~~~~~~-~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~--- 387 (577)
T 2ymu_A 314 -DGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS--- 387 (577)
T ss_dssp -TSSEEEEEETTSCEEEEETTSCEEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSC---
T ss_pred -CCCEEEEEeCCCeEEEEeCCCCeeE-EEeCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCC---
Confidence 99999876 6788999999988776 6655443 4778999999999998876 4688888765444444322211
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+..++|||||+.|+....+ ..|++||..+
T Consensus 388 ---------------v~~~~~s~dg~~l~~~~~d------------------------------------~~v~~~~~~~ 416 (577)
T 2ymu_A 388 ---------------VRGVAFSPDGQTIASASDD------------------------------------KTVKLWNRNG 416 (577)
T ss_dssp ---------------EEEEEECTTSSCEEEEETT------------------------------------SEEEEECTTC
T ss_pred ---------------eEEEEECCCCCEEEEEeCC------------------------------------CEEEEEeCCC
Confidence 4578899999999876643 3478898766
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
.....+ ..+...+..++||||++.++..+ .+..|.+||.++...+.+..+....... .|+|
T Consensus 417 ~~~~~~---------~~~~~~v~~~~~s~d~~~l~~~~----~d~~v~~w~~~~~~~~~~~~~~~~v~~~---~~sp--- 477 (577)
T 2ymu_A 417 QLLQTL---------TGHSSSVWGVAFSPDDQTIASAS----DDKTVKLWNRNGQLLQTLTGHSSSVRGV---AFSP--- 477 (577)
T ss_dssp CEEEEE---------ECCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTSCEEEEEECCSSCEEEE---EECT---
T ss_pred CEEEEe---------cCCCCCeEEEEECCCCCEEEEEc----CCCEEEEEECCCCEEEEEcCCCCCEEEE---EEcC---
Confidence 655555 44566788999999999887765 3456999998766666665554432211 2333
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCc
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT 454 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~ 454 (776)
++.++++...++ .|++|+.++...+.+..+...+..+. |+|||++|+. +..++ .+.||. . .|.
T Consensus 478 -----d~~~las~~~d~--~i~iw~~~~~~~~~~~~h~~~v~~l~-~s~dg~~l~s-~~~dg--~v~lwd--~--~~~-- 540 (577)
T 2ymu_A 478 -----DGQTIASASDDK--TVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDGQTIAS-ASDDK--TVKLWN--R--NGQ-- 540 (577)
T ss_dssp -----TSCEEEEEETTS--EEEEEETTSCEEEEEECCSSCEEEEE-ECTTSSCEEE-EETTS--EEEEEC--T--TSC--
T ss_pred -----CCCEEEEEeCCC--EEEEEcCCCCEEEEEeCCCCCEEEEE-EcCCCCEEEE-EECcC--EEEEEe--C--CCC--
Confidence 334666666667 89999998888888887777777765 9999997654 44443 377776 3 343
Q ss_pred cccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEE
Q 004067 455 LEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCS 496 (776)
Q Consensus 455 ~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~ 496 (776)
.+..+..+. .+..+.|+|||++|+... .+. .|++||
T Consensus 541 --~~~~~~~h~~~v~~~~fs~dg~~l~s~~-~D~---~i~~Wd 577 (577)
T 2ymu_A 541 --LLQTLTGHSSSVWGVAFSPDGQTIASAS-SDK---TVKLWN 577 (577)
T ss_dssp --EEEEEECCSSCEEEEEECTTSSCEEEEE-TTS---CEEEEC
T ss_pred --EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCC---EEEEeC
Confidence 556666654 467899999999887643 322 366654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=185.22 Aligned_cols=256 Identities=14% Similarity=0.172 Sum_probs=184.9
Q ss_pred cceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCC-C
Q 004067 80 SRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSC-S 158 (776)
Q Consensus 80 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~-~ 158 (776)
...|++||+.+++.+++..+. ..+..+.|+| ||++|++..++.|++||+.+ +
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~------------------------~~v~~~~~sp---dg~~l~~~~~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTP------------------------ELFEAPNWSP---DGKYLLLNSEGLLYRLSLAGDP 73 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEES------------------------SCCEEEEECT---TSSEEEEEETTEEEEEESSSCC
T ss_pred ceeEEEEeCCCCceeeeccCC------------------------cceEeeEECC---CCCEEEEEcCCeEEEEeCCCCC
Confidence 468999999999988777542 3688999999 99999999999999999999 8
Q ss_pred ccceecCCCC-CCCccCceeCCCCCEEEEEE-----CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcce
Q 004067 159 KPELKLSSSS-CSPVIDPHLSSDGTMIAFVR-----DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTG 232 (776)
Q Consensus 159 ~~~~~l~~~~-~~~~~~~~~SpDg~~la~~~-----~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (776)
+.. .+.... ...+..+.|||||+.|++.. ...||.+++.++..++++.... ...
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~ 133 (297)
T 2ojh_A 74 SPE-KVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP-------------------SYW 133 (297)
T ss_dssp SCE-ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS-------------------EEE
T ss_pred Cce-EeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC-------------------ccc
Confidence 877 555433 23467899999999999998 3479999999888777654321 235
Q ss_pred EEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCC
Q 004067 233 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYD 312 (776)
Q Consensus 233 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 312 (776)
+.|||||+.|+|.....+ ...|+.+++++++...+ ...
T Consensus 134 ~~~spdg~~l~~~~~~~~---------------------------------~~~l~~~~~~~~~~~~~---------~~~ 171 (297)
T 2ojh_A 134 HGWSPDGKSFTYCGIRDQ---------------------------------VFDIYSMDIDSGVETRL---------THG 171 (297)
T ss_dssp EEECTTSSEEEEEEEETT---------------------------------EEEEEEEETTTCCEEEC---------CCS
T ss_pred eEECCCCCEEEEEECCCC---------------------------------ceEEEEEECCCCcceEc---------ccC
Confidence 789999999998764321 25678888888887665 344
Q ss_pred cceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC--
Q 004067 313 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT-- 390 (776)
Q Consensus 313 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-- 390 (776)
...+..+.|+|||+.+++..... ....||.+++.++..+.+..+....+ ...|+| ++..+++.+...
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~s~-------dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRT-GQMQIWRVRVDGSSVERITDSAYGDW---FPHPSP-------SGDKVVFVSYDADV 240 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTSSCEEECCCCSEEEE---EEEECT-------TSSEEEEEEEETTC
T ss_pred CCccccceECCCCCEEEEEecCC-CCccEEEECCCCCCcEEEecCCcccC---CeEECC-------CCCEEEEEEcCCCC
Confidence 56678899999999888776433 45678999988887777654432211 112333 334466665543
Q ss_pred ------CceEEEEEeCCCceeecccc---CCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 391 ------GFRHLYLHDINGTCLGPITE---GDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 391 ------g~~~l~~~~~~g~~~~~lt~---~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
+...|++|++++++.+.+.. +...+.. +.|+|||+.|++.+..++
T Consensus 241 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNS-PNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp CSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCS-CCBCTTSSEEEEEEECCC
T ss_pred CcccccCceEEEEEecCCCCceeeeccCCCCccccc-ceECCCCCEEEEEEeccC
Confidence 33689999999887665543 2222333 359999999998887643
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=191.98 Aligned_cols=242 Identities=14% Similarity=0.057 Sum_probs=166.4
Q ss_pred CceEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~-~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
..+.+.+.+ .+|..+.+.+|.|++.. ..+++|+||++||+++... .|... ......+++.||+|+++|.+++|.
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~-~~~~~p~vv~lHG~~~~~~---~~~~~-~~~~~~~~~~g~~vv~pd~~~~g~ 90 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQAS-TGAKVPVLYWLSGLTCSDE---NFMQK-AGAQRLAAELGIAIVAPDTSPRGE 90 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG-TTCCEEEEEEECCTTCCSS---HHHHH-SCCHHHHHHHTCEEEEECSSCCST
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCC-CCCCccEEEEecCCCCChh---HHhhc-ccHHHHHhhCCeEEEEeCCccccc
Confidence 345666765 47889999999998742 2368999999999876543 23211 113566778899999999986654
Q ss_pred Cchh-----------hh-hhhhhcc-CCccHHH-H-HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 602 RGLK-----------FE-ASIKHNC-GRIDAED-Q-LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 602 ~~~~-----------~~-~~~~~~~-~~~~~~D-~-~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
.... +. ......+ ......+ + ...+.++.+...+ .++++|+||||||++|+.++.++|++|+++
T Consensus 91 ~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 169 (280)
T 3i6y_A 91 GVADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSV 169 (280)
T ss_dssp TCCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCE
T ss_pred ccCcccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEE
Confidence 2111 00 0000000 0001122 2 2344455454434 579999999999999999999999999999
Q ss_pred EEcCCCCCcccccc--cccccccCCCCCCccchhcCChhhhhccCC--CcEEEEecCCCCccChHH-HHHHHHHHHHCCC
Q 004067 667 VSGAPVTSWDGYDT--FYTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRH-TARLINALVAARK 741 (776)
Q Consensus 667 v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~ 741 (776)
++.+|..+...... .....+++. ....+...++...+.+++ .|+|++||+.|.+++... ++.+++.+++.+.
T Consensus 170 v~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~~~g~ 246 (280)
T 3i6y_A 170 SAFSPINNPVNCPWGQKAFTAYLGK---DTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSNNY 246 (280)
T ss_dssp EEESCCCCGGGSHHHHHHHHHHHCS---CGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHHHHTTC
T ss_pred EEeCCccccccCchHHHHHHHhcCC---chHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHHHHcCC
Confidence 99999877543210 011112222 234556677777777776 799999999999998755 8899999999999
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+++++++|+++|.+. ....+....++|+.++|
T Consensus 247 ~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l 278 (280)
T 3i6y_A 247 PLELRSHEGYDHSYY---FIASFIEDHLRFHSNYL 278 (280)
T ss_dssp CEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCccHH---HHHHhHHHHHHHHHhhc
Confidence 999999999999763 34567788889988764
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-20 Score=188.64 Aligned_cols=230 Identities=17% Similarity=0.158 Sum_probs=162.2
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
.+...+|.++.++++.|.+ ++.|+||++||.+++.. .|..++..|+++||.|+++|+||+|.+.....
T Consensus 21 ~~~~~~g~~l~~~~~~~~~-----~~~~~vv~~hG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~ 88 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG-----TPKALIFVSHGAGEHSG-------RYEELARMLMGLDLLVFAHDHVGHGQSEGERM 88 (303)
T ss_dssp EEECTTSCEEEEEEECCSS-----CCSEEEEEECCTTCCGG-------GGHHHHHHHHHTTEEEEEECCTTSTTSCSSTT
T ss_pred eEecCCCeEEEEEEeccCC-----CCCeEEEEECCCCchhh-------HHHHHHHHHHhCCCcEEEeCCCCCCCCCCCCC
Confidence 6778899999999999875 35699999999876543 34556888999999999999999998864311
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc--------
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-------- 679 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-------- 679 (776)
.. .......+|+.++++++..+. +..+++++||||||.+++.++.++|++++++++.+|........
T Consensus 89 ~~---~~~~~~~~d~~~~l~~l~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 163 (303)
T 3pe6_A 89 VV---SDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLA 163 (303)
T ss_dssp CC---SSTHHHHHHHHHHHHHHHHHS--TTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHHHhhcc--CCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHH
Confidence 10 001123678888888887763 45689999999999999999999999999999999876532100
Q ss_pred cccccccc-----CCCC-----CCc---cchh---------------------cCChhhhhccCCCcEEEEecCCCCccC
Q 004067 680 TFYTEKYM-----GLPS-----EDP---VGYE---------------------YSSVMHHVHKMKGKLLLVHGMIDENVH 725 (776)
Q Consensus 680 ~~~~~~~~-----~~~~-----~~~---~~~~---------------------~~~~~~~~~~i~~P~lii~G~~D~~v~ 725 (776)
......+. .... ... ..+. .......+.++++|+|+++|++|..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~ 243 (303)
T 3pe6_A 164 AKVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCD 243 (303)
T ss_dssp HHHHHTTCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSBC
T ss_pred HHHHHHhcccccCCccchhhhhcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCC
Confidence 00000000 0000 000 0000 001124467889999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC--CcHHHHHHHHHHHHHHhC
Q 004067 726 FRHTARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 726 ~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~~~fl~~~l 776 (776)
+..+..+.+.+. +.++++++++++||.+... +...++...+.+||++++
T Consensus 244 ~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~ 294 (303)
T 3pe6_A 244 SKGAYLLMELAK--SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 294 (303)
T ss_dssp HHHHHHHHHHCC--CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhcc--cCCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccC
Confidence 998988888763 2368999999999987332 224567788999998764
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-21 Score=193.51 Aligned_cols=241 Identities=13% Similarity=0.095 Sum_probs=166.5
Q ss_pred ceEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 524 PDIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 524 ~~~~~~~~-~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
.+.+.+.+ ..|..+.+.+|.|+... .+++|+||++||+++... .|... ......+.+.||+|+++|+||+|.+
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~--~~~~p~vv~lHG~~~~~~---~~~~~-~~~~~~~~~~g~~vv~~d~~g~G~s 88 (278)
T 3e4d_A 15 QGVFSHQSETLKSEMTFAVYVPPKAI--HEPCPVVWYLSGLTCTHA---NVMEK-GEYRRMASELGLVVVCPDTSPRGND 88 (278)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG--TSCEEEEEEECCTTCCSH---HHHHH-SCCHHHHHHHTCEEEECCSSCCSTT
T ss_pred EEEEEEeccccCCcceEEEEcCCCCC--CCCCCEEEEEcCCCCCcc---chhhc-ccHHHHHhhCCeEEEecCCcccCcc
Confidence 44566654 46888999999998741 368999999999876543 22211 1135566677999999999999876
Q ss_pred chhhhhh--------hhhcc------CCccHHHH--HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 603 GLKFEAS--------IKHNC------GRIDAEDQ--LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 603 ~~~~~~~--------~~~~~------~~~~~~D~--~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
....... ..... ......+. ...++++.+...+|+++++|+||||||++|+.++.++|++|+++
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 168 (278)
T 3e4d_A 89 VPDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSC 168 (278)
T ss_dssp SCCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCE
T ss_pred cccccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceE
Confidence 4321000 00000 01112222 23566666665677789999999999999999999999999999
Q ss_pred EEcCCCCCcccccc--cccccccCCCCCCccchhcCChhhhhccCC--CcEEEEecCCCCccChHH-HHHHHHHHHHCCC
Q 004067 667 VSGAPVTSWDGYDT--FYTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRH-TARLINALVAARK 741 (776)
Q Consensus 667 v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~ 741 (776)
++.+|..+...... .....+++. ....+...++...+.+++ .|+|++||+.|..++... +..+.+.+++.+.
T Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~g~ 245 (278)
T 3e4d_A 169 SAFAPIVAPSSADWSEPALEKYLGA---DRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKGTDI 245 (278)
T ss_dssp EEESCCSCGGGCTTTHHHHHHHHCS---CGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTTSSC
T ss_pred EEeCCcccccCCccchhhHHHhcCC---cHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHHHHHcCC
Confidence 99999876532110 001112222 233455666766666665 499999999999998532 6889999999999
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+++++++|+++|.+. ........+++|+.++|
T Consensus 246 ~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l 277 (278)
T 3e4d_A 246 GLTLRMHDRYDHSYY---FISTFMDDHLKWHAERL 277 (278)
T ss_dssp EEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCcCHH---HHHHHHHHHHHHHHHhc
Confidence 999999999999763 24566788888988764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-18 Score=193.74 Aligned_cols=319 Identities=15% Similarity=0.129 Sum_probs=224.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+..+.. ..|.+|+.++...+.+..+. ..+....|+|
T Consensus 224 v~~~~~s~dg~~l~~~~~d-----~~i~~w~~~~~~~~~~~~~~------------------------~~v~~v~~~~-- 272 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHS------------------------SSVNGVAFRP-- 272 (577)
T ss_dssp EEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEECCCS------------------------SCEEEEEECT--
T ss_pred EEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCEEEEEecCC------------------------CCEEEEEEcC--
Confidence 4688999999999876542 36999998766655555432 3688899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||+.|+.. .++.|++||..+.... .+..... .+...+|+|||+.|+.... +.|.+|++.+.....+......
T Consensus 273 -d~~~l~~~~~d~~i~~w~~~~~~~~-~~~~h~~-~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~--- 346 (577)
T 2ymu_A 273 -DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSS--- 346 (577)
T ss_dssp -TSSEEEEEETTSCEEEEETTSCEEE-EECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSC---
T ss_pred -CCCEEEEEeCCCEEEEEeCCCcEEE-EEecCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCC---
Confidence 99999876 6788999998776555 5554433 4778899999999998875 4699999887766655432211
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+..++|+|||+.|+....+ ..+.+||..+
T Consensus 347 ---------------v~~~~~s~~g~~l~~~~~d------------------------------------g~v~~~~~~~ 375 (577)
T 2ymu_A 347 ---------------VWGVAFSPDGQTIASASDD------------------------------------KTVKLWNRNG 375 (577)
T ss_dssp ---------------EEEEEECTTSSEEEEEETT------------------------------------SEEEEEETTC
T ss_pred ---------------EEEEEECCCCCEEEEEeCC------------------------------------CEEEEEcCCC
Confidence 4478899999999876632 3478899776
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
.....+ ..+...+..++|||||+.|+... .+..|.+||..+...+.+..+....+.. .|+|
T Consensus 376 ~~~~~~---------~~~~~~v~~~~~s~dg~~l~~~~----~d~~v~~~~~~~~~~~~~~~~~~~v~~~---~~s~--- 436 (577)
T 2ymu_A 376 QLLQTL---------TGHSSSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLLQTLTGHSSSVWGV---AFSP--- 436 (577)
T ss_dssp CEEEEE---------ECCSSCEEEEEECTTSSCEEEEE----TTSEEEEECTTCCEEEEEECCSSCEEEE---EECT---
T ss_pred CEEEEe---------cCCCCCeEEEEECCCCCEEEEEe----CCCEEEEEeCCCCEEEEecCCCCCeEEE---EECC---
Confidence 655555 34566788999999999877665 3456899997665555555544443321 2333
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCc
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT 454 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~ 454 (776)
++.++++...++ .|.+|+.++.....+..+...+..+. |+|||+.|+..+ .++ .+.+|. . .|.
T Consensus 437 -----d~~~l~~~~~d~--~v~~w~~~~~~~~~~~~~~~~v~~~~-~spd~~~las~~-~d~--~i~iw~--~--~~~-- 499 (577)
T 2ymu_A 437 -----DDQTIASASDDK--TVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDGQTIASAS-DDK--TVKLWN--R--NGQ-- 499 (577)
T ss_dssp -----TSSEEEEEETTS--EEEEEETTSCEEEEEECCSSCEEEEE-ECTTSCEEEEEE-TTS--EEEEEE--T--TSC--
T ss_pred -----CCCEEEEEcCCC--EEEEEECCCCEEEEEcCCCCCEEEEE-EcCCCCEEEEEe-CCC--EEEEEc--C--CCC--
Confidence 334555665666 89999998888888887777777665 999999765544 333 367775 4 443
Q ss_pred cccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 455 LEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 455 ~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
.+..+..+. .+..+.|||||++|+..... ..|++||. +++.+..+
T Consensus 500 --~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d----g~v~lwd~-~~~~~~~~ 545 (577)
T 2ymu_A 500 --LLQTLTGHSSSVRGVAFSPDGQTIASASDD----KTVKLWNR-NGQLLQTL 545 (577)
T ss_dssp --EEEEEECCSSCEEEEEECTTSSCEEEEETT----SEEEEECT-TSCEEEEE
T ss_pred --EEEEEeCCCCCEEEEEEcCCCCEEEEEECc----CEEEEEeC-CCCEEEEE
Confidence 456666554 46788999999988765432 36899886 56654444
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=192.60 Aligned_cols=230 Identities=15% Similarity=0.116 Sum_probs=162.6
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTA 600 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g 600 (776)
...+.+.++..++ .+.+++|.|... ++.|+||++|||+....-.. .+..++..|++ .||.|+++|+||++
T Consensus 63 ~~~~~~~i~~~~~-~i~~~iy~P~~~----~~~p~vv~~HGGg~~~g~~~----~~~~~~~~La~~~g~~Vv~~Dyrg~~ 133 (323)
T 3ain_A 63 GKIEDITIPGSET-NIKARVYYPKTQ----GPYGVLVYYHGGGFVLGDIE----SYDPLCRAITNSCQCVTISVDYRLAP 133 (323)
T ss_dssp SEEEEEEEECSSS-EEEEEEEECSSC----SCCCEEEEECCSTTTSCCTT----TTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred cEEEEEEecCCCC-eEEEEEEecCCC----CCCcEEEEECCCccccCChH----HHHHHHHHHHHhcCCEEEEecCCCCC
Confidence 4567888887777 799999999762 46799999999763322111 34455777775 59999999999998
Q ss_pred CCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC-C-CCCcEEEEeechHHHHHHHHHhhCCCce---EEEEEcCCCCCc
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL-A-KVGHIGLYGWSYGGYLSAITLARFPDVF---QCAVSGAPVTSW 675 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~-i-d~~~i~l~G~S~GG~~a~~~a~~~~~~~---~~~v~~~~~~~~ 675 (776)
.+... ...+|+.++++++.++.. . |.++|+|+|+||||.+|+.++.++++.. ++.++.+|..+.
T Consensus 134 ~~~~p-----------~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~ 202 (323)
T 3ain_A 134 ENKFP-----------AAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSF 202 (323)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSC
T ss_pred CCCCc-----------chHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccC
Confidence 76421 126789999999987631 1 6789999999999999999998877665 888999988764
Q ss_pred cccccc-----------------ccccccCCCCCCccchhcCChhhh-hccCCCcEEEEecCCCCccChHHHHHHHHHHH
Q 004067 676 DGYDTF-----------------YTEKYMGLPSEDPVGYEYSSVMHH-VHKMKGKLLLVHGMIDENVHFRHTARLINALV 737 (776)
Q Consensus 676 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 737 (776)
...... +...+...... ......+++.. +..+ .|+|+++|+.|.++ ..+..++++++
T Consensus 203 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~sp~~~~l~~l-~P~lii~G~~D~l~--~~~~~~a~~l~ 277 (323)
T 3ain_A 203 DLITKSLYDNGEGFFLTREHIDWFGQQYLRSFAD--LLDFRFSPILADLNDL-PPALIITAEHDPLR--DQGEAYANKLL 277 (323)
T ss_dssp CSCCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGG--GGCTTTCGGGSCCTTC-CCEEEEEETTCTTH--HHHHHHHHHHH
T ss_pred CCCCccHHHhccCCCCCHHHHHHHHHHhCCCCcc--cCCcccCcccCcccCC-CHHHEEECCCCccH--HHHHHHHHHHH
Confidence 321110 00111111100 00001223222 2222 49999999999987 46788999999
Q ss_pred HCCCCeEEEEecCCCCCCCC----CCcHHHHHHHHHHHHHHhC
Q 004067 738 AARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 738 ~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~fl~~~l 776 (776)
+.+.+++++++++++|.+.. .+...++.+.+.+||+++|
T Consensus 278 ~ag~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 320 (323)
T 3ain_A 278 QSGVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVF 320 (323)
T ss_dssp HTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998743 2446788999999998764
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=190.41 Aligned_cols=229 Identities=18% Similarity=0.175 Sum_probs=155.4
Q ss_pred eEEEE-EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 525 DIVQI-QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 525 ~~~~~-~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
+.+.+ .+.+|..+.+..+.+.+ .+.|+||++||++++.. .| .+..++..+++.||.|+++|+||+|.+.
T Consensus 12 ~~~~~~~~~~g~~l~~~~~~~~~-----~~~~~vv~~HG~~~~~~---~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~ 81 (270)
T 3llc_A 12 HAITVGQGSDARSIAALVRAPAQ-----DERPTCIWLGGYRSDMT---GT--KALEMDDLAASLGVGAIRFDYSGHGASG 81 (270)
T ss_dssp EEEEESSGGGCEEEEEEEECCSS-----TTSCEEEEECCTTCCTT---SH--HHHHHHHHHHHHTCEEEEECCTTSTTCC
T ss_pred ceEEEeeccCcceEEEEeccCCC-----CCCCeEEEECCCccccc---cc--hHHHHHHHHHhCCCcEEEeccccCCCCC
Confidence 34444 45689999998887654 24589999999766532 12 1223567788889999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh---CC---CceEEEEEcCCCCCccc
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR---FP---DVFQCAVSGAPVTSWDG 677 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~---~~---~~~~~~v~~~~~~~~~~ 677 (776)
.......... ..+|+.++++++ ..++++++||||||.+++.++.+ +| +.++++++.+|..++..
T Consensus 82 ~~~~~~~~~~----~~~d~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~ 151 (270)
T 3llc_A 82 GAFRDGTISR----WLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTS 151 (270)
T ss_dssp SCGGGCCHHH----HHHHHHHHHHHH------CCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHH
T ss_pred CccccccHHH----HHHHHHHHHHHh------ccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchh
Confidence 5432211111 134455555444 25689999999999999999999 99 89999999999876432
Q ss_pred c------cccc------------cccccCCCCCCc----cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHH
Q 004067 678 Y------DTFY------------TEKYMGLPSEDP----VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINA 735 (776)
Q Consensus 678 ~------~~~~------------~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 735 (776)
. .... ...+...+.... ..+........+.++++|+|+++|++|..+++..+..+++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~~~~~~~~~~~ 231 (270)
T 3llc_A 152 DLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEH 231 (270)
T ss_dssp HTTGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSCHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCCHHHHHHHHHh
Confidence 0 0000 000000000000 11112223445677889999999999999999988888887
Q ss_pred HHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 736 LVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 736 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+. +.+++++++++++|.+...+....+.+.+.+||++.
T Consensus 232 ~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~ 269 (270)
T 3llc_A 232 LP--ADDVVLTLVRDGDHRLSRPQDIDRMRNAIRAMIEPR 269 (270)
T ss_dssp SC--SSSEEEEEETTCCSSCCSHHHHHHHHHHHHHHHC--
T ss_pred cC--CCCeeEEEeCCCcccccccccHHHHHHHHHHHhcCC
Confidence 62 234899999999998766677888899999998753
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=194.05 Aligned_cols=190 Identities=16% Similarity=0.210 Sum_probs=151.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|.. .+.++.|... .+.|+||++||+++... .|..+++.|+++||.|+++|+||+|.+....
T Consensus 79 ~~g~~-~~~~~~p~~~----~~~p~vv~~HG~~~~~~-------~~~~~~~~la~~G~~vv~~d~~g~g~s~~~~----- 141 (306)
T 3vis_A 79 ADGFG-GGTIYYPREN----NTYGAIAISPGYTGTQS-------SIAWLGERIASHGFVVIAIDTNTTLDQPDSR----- 141 (306)
T ss_dssp CSSSC-CEEEEEESSC----SCEEEEEEECCTTCCHH-------HHHHHHHHHHTTTEEEEEECCSSTTCCHHHH-----
T ss_pred cCCCc-ceEEEeeCCC----CCCCEEEEeCCCcCCHH-------HHHHHHHHHHhCCCEEEEecCCCCCCCcchH-----
Confidence 34543 4677777664 36899999999776543 3455688899999999999999998775321
Q ss_pred hccCCccHHHHHHHHHHHHHc------CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccccc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQ------GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEK 685 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~------~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (776)
..|+.++++++.+. ..++.++++++||||||++++.++.++|+ ++++++++|...
T Consensus 142 -------~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~----------- 202 (306)
T 3vis_A 142 -------ARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL----------- 202 (306)
T ss_dssp -------HHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-----------
T ss_pred -------HHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC-----------
Confidence 46788889999887 66788999999999999999999999998 788888877532
Q ss_pred ccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChH-HHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHH
Q 004067 686 YMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 764 (776)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~ 764 (776)
...+.+++.|+|+++|++|..+++. +...+++.+...+ +++++++++++|.+ ..+...++
T Consensus 203 -----------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~-~~~~~~~~ 263 (306)
T 3vis_A 203 -----------------NKSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELDGASHFA-PNITNKTI 263 (306)
T ss_dssp -----------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEETTCCTTG-GGSCCHHH
T ss_pred -----------------ccccccCCCCEEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEECCCCccc-hhhchhHH
Confidence 0124567799999999999999998 6899999886554 89999999999987 33445788
Q ss_pred HHHHHHHHHHhC
Q 004067 765 EERIWEFIERTL 776 (776)
Q Consensus 765 ~~~~~~fl~~~l 776 (776)
.+.+.+||+++|
T Consensus 264 ~~~i~~fl~~~l 275 (306)
T 3vis_A 264 GMYSVAWLKRFV 275 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998864
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=201.71 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=164.6
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+.+.++. +|..+.++++.+.. ++.|+||++||..++.. .| .......+.+.||.|+++|+||+|.
T Consensus 133 ~~~~~~~i~~-~~~~l~~~~~~~~~-----~~~p~vv~~HG~~~~~~---~~---~~~~~~~~~~~g~~vi~~D~~G~G~ 200 (405)
T 3fnb_A 133 IPLKSIEVPF-EGELLPGYAIISED-----KAQDTLIVVGGGDTSRE---DL---FYMLGYSGWEHDYNVLMVDLPGQGK 200 (405)
T ss_dssp CCCEEEEEEE-TTEEEEEEEECCSS-----SCCCEEEEECCSSCCHH---HH---HHHTHHHHHHTTCEEEEECCTTSTT
T ss_pred CCcEEEEEeE-CCeEEEEEEEcCCC-----CCCCEEEEECCCCCCHH---HH---HHHHHHHHHhCCcEEEEEcCCCCcC
Confidence 4578888887 67889999885432 45699999999766543 12 1122335668999999999999998
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
+..... ........|+.++++++..+. .+|+|+||||||++++.++..+| +++++|+.+|+.++......
T Consensus 201 s~~~~~-----~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~ 270 (405)
T 3fnb_A 201 NPNQGL-----HFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRI 270 (405)
T ss_dssp GGGGTC-----CCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHH
T ss_pred CCCCCC-----CCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHH
Confidence 743211 122234678888888886543 68999999999999999999998 78999999999876422110
Q ss_pred ccccccCCCCC------------------------------Cc----cchhcCChhhhhccCCCcEEEEecCCCCccChH
Q 004067 682 YTEKYMGLPSE------------------------------DP----VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR 727 (776)
Q Consensus 682 ~~~~~~~~~~~------------------------------~~----~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~ 727 (776)
........+.. .. ..+....+...+.++++|+|+++|+.|..+++.
T Consensus 271 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~ 350 (405)
T 3fnb_A 271 SFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMR 350 (405)
T ss_dssp HCC------------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTSCHHHHH
T ss_pred hhhhhhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCCcCCChH
Confidence 00000000000 00 000111111226788999999999999999999
Q ss_pred HHHHHHHHHHHCCCCeEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHhC
Q 004067 728 HTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 728 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~~~l 776 (776)
.+..+++.+...+.++++++++++.|.. ...+....+.+.+.+||+++|
T Consensus 351 ~~~~l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l 401 (405)
T 3fnb_A 351 QSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIF 401 (405)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHh
Confidence 9999999999988899999996655542 256778899999999999864
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=174.02 Aligned_cols=197 Identities=17% Similarity=0.142 Sum_probs=154.0
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchh--hhHHHHhCCcEEEEECCCCCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM--RAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~--~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
.+...+.. +|.++++++|.|.+ +.|+||++||+++... .+.. ++..|+++||.|+++|+||+|.
T Consensus 4 ~~~~~~~~-~g~~l~~~~~~~~~------~~~~vv~~hG~~~~~~-------~~~~~~~~~~l~~~G~~v~~~d~~g~g~ 69 (207)
T 3bdi_A 4 LQEEFIDV-NGTRVFQRKMVTDS------NRRSIALFHGYSFTSM-------DWDKADLFNNYSKIGYNVYAPDYPGFGR 69 (207)
T ss_dssp CEEEEEEE-TTEEEEEEEECCTT------CCEEEEEECCTTCCGG-------GGGGGTHHHHHHTTTEEEEEECCTTSTT
T ss_pred ceeEEEee-CCcEEEEEEEeccC------CCCeEEEECCCCCCcc-------ccchHHHHHHHHhCCCeEEEEcCCcccc
Confidence 44555554 88899999999865 3489999999876643 2334 6788999999999999999988
Q ss_pred C---chhhhhhhhhccCCc-cHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc
Q 004067 602 R---GLKFEASIKHNCGRI-DAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG 677 (776)
Q Consensus 602 ~---~~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~ 677 (776)
+ .... ... ..+++.+.+..+.++. +.++++++|||+||.+++.++.++|++++++++.+|.....
T Consensus 70 s~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~- 138 (207)
T 3bdi_A 70 SASSEKYG--------IDRGDLKHAAEFIRDYLKAN--GVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVES- 138 (207)
T ss_dssp SCCCTTTC--------CTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCGG-
T ss_pred cCcccCCC--------CCcchHHHHHHHHHHHHHHc--CCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccccc-
Confidence 7 4321 122 4677777777777654 44699999999999999999999999999999998863211
Q ss_pred ccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCC
Q 004067 678 YDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR 757 (776)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 757 (776)
+ ...+.+++.|+++++|++|..+++.....+.+.+ .+.+++++++++|.+ .
T Consensus 139 ~------------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~-~ 189 (207)
T 3bdi_A 139 L------------------------KGDMKKIRQKTLLVWGSKDHVVPIALSKEYASII----SGSRLEIVEGSGHPV-Y 189 (207)
T ss_dssp G------------------------HHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHS----TTCEEEEETTCCSCH-H
T ss_pred h------------------------hHHHhhccCCEEEEEECCCCccchHHHHHHHHhc----CCceEEEeCCCCCCc-c
Confidence 0 2345677899999999999999998888887766 467899999999986 3
Q ss_pred CCcHHHHHHHHHHHHHH
Q 004067 758 HRDRIYMEERIWEFIER 774 (776)
Q Consensus 758 ~~~~~~~~~~~~~fl~~ 774 (776)
.+...++.+.+.+||++
T Consensus 190 ~~~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 190 IEKPEEFVRITVDFLRN 206 (207)
T ss_dssp HHSHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 34577888999999875
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=180.77 Aligned_cols=188 Identities=11% Similarity=0.076 Sum_probs=132.8
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
+..++||++||.+++.. .+..+++.|...|+.|++|+.+|+++++..+....... ....++..+.++.+.+
T Consensus 20 ~a~~~Vv~lHG~G~~~~-------~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~--~~~~~~~~~~i~~~~~ 90 (210)
T 4h0c_A 20 RAKKAVVMLHGRGGTAA-------DIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQN--QPALDSALALVGEVVA 90 (210)
T ss_dssp TCSEEEEEECCTTCCHH-------HHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGG--TTHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHH-------HHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcccc--hHHHHHHHHHHHHHHH
Confidence 45689999999655432 23345677778899999999998876544332222111 1123333344443332
Q ss_pred ---cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhcc
Q 004067 632 ---QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHK 708 (776)
Q Consensus 632 ---~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (776)
...+|.+||+|+|+|+||++++.+++++|+++++++++++..... ....... ....
T Consensus 91 ~~~~~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~--------------~~~~~~~-------~~~~ 149 (210)
T 4h0c_A 91 EIEAQGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQ--------------ELAIGNY-------KGDF 149 (210)
T ss_dssp HHHHTTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSS--------------SCCGGGC-------CBCC
T ss_pred HHHHhCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCCh--------------hhhhhhh-------hhhc
Confidence 245799999999999999999999999999999999988753210 0000000 0111
Q ss_pred CCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 709 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 709 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.+.|+|++||++|++||++.++++++.|++.+.++++++||+.+|.+. .+..+.+.+||.|
T Consensus 150 ~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~-----~~el~~i~~wL~k 210 (210)
T 4h0c_A 150 KQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTIS-----GDEIQLVNNTILK 210 (210)
T ss_dssp TTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCCSSCC-----HHHHHHHHHTTTC
T ss_pred cCCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCcC-----HHHHHHHHHHHcC
Confidence 246999999999999999999999999999999999999999999873 2335777888753
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=190.97 Aligned_cols=242 Identities=12% Similarity=0.065 Sum_probs=164.6
Q ss_pred CceEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~-~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
..+.+.+.+ ..|..+.+.+|.|++.. ..+++|+||++||+++... .|.. .....+.+++.||+|+++|.+++|.
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~-~~~~~P~vv~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~vv~~d~~~~g~ 88 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGAS-ESNKVPVLYWLSGLTCTDE---NFMQ-KAGAFKKAAELGIAIVAPDTSPRGD 88 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCB-TTBCEEEEEEECCTTCCSH---HHHH-HSCCHHHHHHHTCEEEECCSSCCST
T ss_pred eEEEEEEechhcCCceEEEEEcCCCCC-CCCCcCEEEEeCCCCCChh---hhhc-chhHHHHHhhCCeEEEEeCCccccc
Confidence 345566765 46889999999998752 2368999999999876543 2321 1123566778899999999876553
Q ss_pred Cch-----------hhh-hhhhhcc-CCccHHH-HH-HHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 602 RGL-----------KFE-ASIKHNC-GRIDAED-QL-TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 602 ~~~-----------~~~-~~~~~~~-~~~~~~D-~~-~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
+.. .+. ......+ ......+ +. +.+.++.+...+ .++++|+||||||++|+.++.++|++|+++
T Consensus 89 ~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~ 167 (280)
T 3ls2_A 89 NVPNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSA 167 (280)
T ss_dssp TSCCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCE
T ss_pred ccccccccccccCCccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEE
Confidence 311 100 0000000 0011122 22 334455544433 479999999999999999999999999999
Q ss_pred EEcCCCCCcccccc--cccccccCCCCCCccchhcCChhhhhccCC----CcEEEEecCCCCccChHH-HHHHHHHHHHC
Q 004067 667 VSGAPVTSWDGYDT--FYTEKYMGLPSEDPVGYEYSSVMHHVHKMK----GKLLLVHGMIDENVHFRH-TARLINALVAA 739 (776)
Q Consensus 667 v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~P~lii~G~~D~~v~~~~-~~~~~~~l~~~ 739 (776)
++.+|..+...... .....+++. ....+...++...+.+++ .|+|++||+.|.+++.+. +.+++++|++.
T Consensus 168 ~~~s~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~ 244 (280)
T 3ls2_A 168 SAFSPIVNPINCPWGVKAFTGYLGA---DKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAKQK 244 (280)
T ss_dssp EEESCCSCGGGSHHHHHHHHHHHCS---CGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHHHH
T ss_pred EEecCccCcccCcchhhHHHhhcCc---hHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHHHHh
Confidence 99999877543210 001122222 234455667777777775 499999999999999754 78999999999
Q ss_pred CCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 740 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 740 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+.+++++++|+++|.+. .........++|+.++|
T Consensus 245 g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l 278 (280)
T 3ls2_A 245 DYPLTLEMQTGYDHSYF---FISSFIDQHLVFHHQYL 278 (280)
T ss_dssp TCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCchh---hHHHHHHHHHHHHHHHh
Confidence 99999999999999863 34566778889998864
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=193.63 Aligned_cols=234 Identities=14% Similarity=0.077 Sum_probs=162.1
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCC-------------CCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRY-------------GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKG 588 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~-------------~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G 588 (776)
..+.+.+.. +..+.+.+|.|+.... ..++.|+||++|||+........ ..|..++..|+ +.|
T Consensus 71 ~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~--~~~~~~~~~la~~~g 146 (351)
T 2zsh_A 71 FSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANS--AIYDTLCRRLVGLCK 146 (351)
T ss_dssp EEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTB--HHHHHHHHHHHHHHT
T ss_pred eEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcc--hhHHHHHHHHHHHcC
Confidence 345566654 4458888999976410 22578999999997653221111 11344577787 789
Q ss_pred cEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC----CCCCC-cEEEEeechHHHHHHHHHhhCCC--
Q 004067 589 ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG----LAKVG-HIGLYGWSYGGYLSAITLARFPD-- 661 (776)
Q Consensus 589 ~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~id~~-~i~l~G~S~GG~~a~~~a~~~~~-- 661 (776)
|.|+++|+||.+.+... ..++|+.++++++.++. .+|.+ +|+|+||||||.+|+.++.++++
T Consensus 147 ~~vv~~d~rg~~~~~~~-----------~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~ 215 (351)
T 2zsh_A 147 CVVVSVNYRRAPENPYP-----------CAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESG 215 (351)
T ss_dssp SEEEEECCCCTTTSCTT-----------HHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTT
T ss_pred CEEEEecCCCCCCCCCc-----------hhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccC
Confidence 99999999997654321 23789999999998753 47888 99999999999999999998887
Q ss_pred -ceEEEEEcCCCCCccccccc-----------------ccccccCCCCCCccchhcCCh----hhhhccCCC-cEEEEec
Q 004067 662 -VFQCAVSGAPVTSWDGYDTF-----------------YTEKYMGLPSEDPVGYEYSSV----MHHVHKMKG-KLLLVHG 718 (776)
Q Consensus 662 -~~~~~v~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~-P~lii~G 718 (776)
.++++|+.+|..+....... +...+...... ......++ ...+.+++. |+|+++|
T Consensus 216 ~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~i~~pP~Lii~G 293 (351)
T 2zsh_A 216 IDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGED--REHPACNPFSPRGKSLEGVSFPKSLVVVA 293 (351)
T ss_dssp CCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCC--TTSTTTCTTSTTSCCCTTCCCCEEEEEEE
T ss_pred CCeeEEEEECCccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCC--CCCcccCCCCCCccchhhCCCCCEEEEEc
Confidence 89999999998653211000 00011100000 00001111 123444555 9999999
Q ss_pred CCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCC---CCcHHHHHHHHHHHHHHh
Q 004067 719 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR---HRDRIYMEERIWEFIERT 775 (776)
Q Consensus 719 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~---~~~~~~~~~~~~~fl~~~ 775 (776)
++|.+++ .+..+++++++.+.+++++++++++|.+.. .+...++.+.+.+||+++
T Consensus 294 ~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~~ 351 (351)
T 2zsh_A 294 GLDLIRD--WQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNAE 351 (351)
T ss_dssp TTSTTHH--HHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC-
T ss_pred CCCcchH--HHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 9999876 567899999999999999999999998743 256788999999999764
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=193.08 Aligned_cols=229 Identities=14% Similarity=0.060 Sum_probs=164.5
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGT 599 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~ 599 (776)
....+.++++..+|..+.+++|.|.. ++.|+||++|||+....... .+...+..++ +.||.|+++|||+.
T Consensus 57 ~~~~~~~~i~~~~G~~i~~~~~~P~~-----~~~p~vv~~HGgG~~~g~~~----~~~~~~~~la~~~g~~vv~~dyr~~ 127 (317)
T 3qh4_A 57 GVAVADDVVTGEAGRPVPVRIYRAAP-----TPAPVVVYCHAGGFALGNLD----TDHRQCLELARRARCAVVSVDYRLA 127 (317)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEECSC-----SSEEEEEEECCSTTTSCCTT----TTHHHHHHHHHHHTSEEEEECCCCT
T ss_pred cceEEEEEecCCCCCeEEEEEEecCC-----CCCcEEEEECCCcCccCChH----HHHHHHHHHHHHcCCEEEEecCCCC
Confidence 45678899999899899999999976 46799999999764322111 2333456666 56999999999977
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCC
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPV 672 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~ 672 (776)
++... ....+|+.++++++.++ ..+|.++|+|+|+|+||.+|+.++.++++ .+++.++.+|+
T Consensus 128 p~~~~-----------p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~ 196 (317)
T 3qh4_A 128 PEHPY-----------PAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPV 196 (317)
T ss_dssp TTSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCC
T ss_pred CCCCC-----------chHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECce
Confidence 65431 12377899999999886 45788899999999999999999987544 48999999998
Q ss_pred CCccccccc----------------ccccccCCCCCCccchhcCChhhhhccCC--CcEEEEecCCCCccChHHHHHHHH
Q 004067 673 TSWDGYDTF----------------YTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLIN 734 (776)
Q Consensus 673 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~ 734 (776)
.+....... +...+++.... ....++.. ...+. .|+|+++|+.|.+++ ++..+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~-~~~l~~lpP~li~~G~~D~~~~--~~~~~a~ 269 (317)
T 3qh4_A 197 LDDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTP----SPESVPGR-RGQLAGLPATLITCGEIDPFRD--EVLDYAQ 269 (317)
T ss_dssp CCSSCCHHHHHTTTCSSSCHHHHHHHHHHHHTTCCC----CTTTCGGG-CSCCTTCCCEEEEEEEESTTHH--HHHHHHH
T ss_pred ecCCCCcCHHHhcCCCCcCHHHHHHHHHHhcCCCCC----CcccCCCc-ccccCCCCceeEEecCcCCCch--hHHHHHH
Confidence 876411000 00111111100 00111211 12222 499999999999865 6788999
Q ss_pred HHHHCCCCeEEEEecCCCCCCC----CCCcHHHHHHHHHHHHHHhC
Q 004067 735 ALVAARKPYEILIFPDERHMPR----RHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 735 ~l~~~~~~~~~~~~~~~~H~~~----~~~~~~~~~~~~~~fl~~~l 776 (776)
++++.+.++++++|++++|.+. ..+...++.+.+.+||+++|
T Consensus 270 ~l~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l 315 (317)
T 3qh4_A 270 RLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAF 315 (317)
T ss_dssp HHHHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999862 23456889999999999874
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=186.19 Aligned_cols=217 Identities=16% Similarity=0.067 Sum_probs=155.9
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+...++..++..+.+.+|.|.. ++.|+||++||++....... .|..++..|+++||.|+++|+||++...
T Consensus 38 ~~~~~i~~~~~~~~~~~~~~p~~-----~~~p~vv~~HGgg~~~~~~~----~~~~~~~~l~~~G~~v~~~d~~~~~~~~ 108 (262)
T 2pbl_A 38 RARLNLSYGEGDRHKFDLFLPEG-----TPVGLFVFVHGGYWMAFDKS----SWSHLAVGALSKGWAVAMPSYELCPEVR 108 (262)
T ss_dssp GEEEEEESSSSTTCEEEEECCSS-----SCSEEEEEECCSTTTSCCGG----GCGGGGHHHHHTTEEEEEECCCCTTTSC
T ss_pred CCccccccCCCCCceEEEEccCC-----CCCCEEEEEcCcccccCChH----HHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence 44556666667668888888865 36799999999652211111 3345678899999999999999887532
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC------CCceEEEEEcCCCCCccc
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDG 677 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~------~~~~~~~v~~~~~~~~~~ 677 (776)
. . ...+|+.++++++..+.. ++++|+||||||.+++.++.++ +++++++++.+|..++..
T Consensus 109 ~-------~----~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~ 174 (262)
T 2pbl_A 109 I-------S----EITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRP 174 (262)
T ss_dssp H-------H----HHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGG
T ss_pred h-------H----HHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchH
Confidence 1 1 126789999999987643 6999999999999999999987 889999999999877543
Q ss_pred ccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCC
Q 004067 678 YDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR 757 (776)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 757 (776)
....+....+. .....+...++...+.++++|+|+++|++|..+++..+..+++.+. ++++++++++|.+.
T Consensus 175 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~H~~~- 245 (262)
T 2pbl_A 175 LLRTSMNEKFK---MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHHFNV- 245 (262)
T ss_dssp GGGSTTHHHHC---CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCTTTT-
T ss_pred HHhhhhhhhhC---CCHHHHHhcCcccccCCCCCCEEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeCCCCcchH-
Confidence 32211111111 1223344556666777888999999999999999999999999884 79999999999763
Q ss_pred CCcHHHHHHHHHHHH
Q 004067 758 HRDRIYMEERIWEFI 772 (776)
Q Consensus 758 ~~~~~~~~~~~~~fl 772 (776)
.+........+.+++
T Consensus 246 ~~~~~~~~~~l~~~l 260 (262)
T 2pbl_A 246 IEPLADPESDLVAVI 260 (262)
T ss_dssp TGGGGCTTCHHHHHH
T ss_pred HhhcCCCCcHHHHHH
Confidence 333333334444444
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-20 Score=187.93 Aligned_cols=213 Identities=15% Similarity=0.123 Sum_probs=140.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC-CCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR 602 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~-g~~ 602 (776)
++...+.+.+|..++++.+.|... .+++.|+||++||.+++.. .|..++..|+++||.|+++|+||| |.|
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~--~~~~~~~VvllHG~g~~~~-------~~~~~~~~L~~~G~~Vi~~D~rGh~G~S 77 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKEN--VPFKNNTILIASGFARRMD-------HFAGLAEYLSTNGFHVFRYDSLHHVGLS 77 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTT--SCCCSCEEEEECTTCGGGG-------GGHHHHHHHHTTTCCEEEECCCBCC---
T ss_pred ceEEEEEcCCCCEEEEEEecCccc--CCCCCCEEEEecCCccCch-------HHHHHHHHHHHCCCEEEEeeCCCCCCCC
Confidence 566778888999999999988642 1134589999999766543 345568889999999999999998 877
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-cc
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-TF 681 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-~~ 681 (776)
.......... ...+|+.++++++.+. +..+++++||||||++|+.+|.+ | +++++|+.++...+.... ..
T Consensus 78 ~~~~~~~~~~----~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~ 148 (305)
T 1tht_A 78 SGSIDEFTMT----TGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKA 148 (305)
T ss_dssp -----CCCHH----HHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHH
T ss_pred CCcccceehH----HHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHH
Confidence 5321110000 1256778888888743 34689999999999999999998 6 788888887765432110 00
Q ss_pred cccccc-----CCCCC----C----ccchh----cC------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 682 YTEKYM-----GLPSE----D----PVGYE----YS------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 682 ~~~~~~-----~~~~~----~----~~~~~----~~------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
+...+. ..+.. . ...+. .. +....+.++++|+|+++|++|..+|+..+..+++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp~~~~~~l~~~i~- 227 (305)
T 1tht_A 149 LGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIR- 227 (305)
T ss_dssp HSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCT-
T ss_pred hhhhhhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhcC-
Confidence 000000 00000 0 00000 00 1234577899999999999999999988887776542
Q ss_pred CCCCeEEEEecCCCCCCC
Q 004067 739 ARKPYEILIFPDERHMPR 756 (776)
Q Consensus 739 ~~~~~~~~~~~~~~H~~~ 756 (776)
..+.++++++++||.+.
T Consensus 228 -~~~~~l~~i~~agH~~~ 244 (305)
T 1tht_A 228 -TGHCKLYSLLGSSHDLG 244 (305)
T ss_dssp -TCCEEEEEETTCCSCTT
T ss_pred -CCCcEEEEeCCCCCchh
Confidence 24689999999999873
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=194.23 Aligned_cols=233 Identities=14% Similarity=0.045 Sum_probs=164.2
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+.+.+...+|..+.+++|.|.... ++.|+||++||++....... ...+..++..|++.||+|+++|+||+|++.
T Consensus 82 ~~~~~~~~~~g~~l~~~v~~p~~~~---~~~p~vv~iHGgg~~~g~~~--~~~~~~~~~~la~~g~~vv~~d~r~~gg~~ 156 (361)
T 1jkm_A 82 TSTETILGVDGNEITLHVFRPAGVE---GVLPGLVYTHGGGMTILTTD--NRVHRRWCTDLAAAGSVVVMVDFRNAWTAE 156 (361)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTCC---SCEEEEEEECCSTTTSSCSS--SHHHHHHHHHHHHTTCEEEEEECCCSEETT
T ss_pred eeeeeeecCCCCeEEEEEEeCCCCC---CCCeEEEEEcCCccccCCCc--ccchhHHHHHHHhCCCEEEEEecCCCCCCC
Confidence 4567788888878999999997641 37899999999763211111 002334577888899999999999997553
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcC---CCCCCcEEEEeechHHHHHHHHHhh-----CCCceEEEEEcCCCCCc
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLAR-----FPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~-----~~~~~~~~v~~~~~~~~ 675 (776)
.. ........|+..+++++.++. .++ +|+|+|||+||.+++.++.. +|+.++++|+.+|..+.
T Consensus 157 ~~-------~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~~ 227 (361)
T 1jkm_A 157 GH-------HPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISG 227 (361)
T ss_dssp EE-------CCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCC
T ss_pred CC-------CCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcccc
Confidence 11 112234789999999998762 334 99999999999999999988 78789999999998765
Q ss_pred c---------cccccc----------------cccccCCCCCCccchhcCChh----hhhccCCCcEEEEecCCCCccCh
Q 004067 676 D---------GYDTFY----------------TEKYMGLPSEDPVGYEYSSVM----HHVHKMKGKLLLVHGMIDENVHF 726 (776)
Q Consensus 676 ~---------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~P~lii~G~~D~~v~~ 726 (776)
. .....+ ...+........ ....++. ..+.++. |+|+++|++|..++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~l~~l~-P~Lii~G~~D~~~~- 303 (361)
T 1jkm_A 228 GYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAE--DPIAWPYFASEDELRGLP-PFVVAVNELDPLRD- 303 (361)
T ss_dssp CTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTT--CTTTCGGGCCHHHHTTCC-CEEEEEETTCTTHH-
T ss_pred ccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCC--CcccCccccChhhHcCCC-ceEEEEcCcCcchh-
Confidence 1 100000 011111111000 0011222 3455665 99999999999887
Q ss_pred HHHHHHHHHHHHCCCCeEEEEecCCCCCCC-C----CCcH-HHHHHHHHHHHHHh
Q 004067 727 RHTARLINALVAARKPYEILIFPDERHMPR-R----HRDR-IYMEERIWEFIERT 775 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~-~----~~~~-~~~~~~~~~fl~~~ 775 (776)
.+..+++++.+.+.+++++++++++|.+. . .... .++.+.+.+||+++
T Consensus 304 -~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 357 (361)
T 1jkm_A 304 -EGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 357 (361)
T ss_dssp -HHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999874 2 1233 77889999999875
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=182.95 Aligned_cols=205 Identities=17% Similarity=0.164 Sum_probs=146.8
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
+.|+||++||.++... .|..++..|+++||.|+++|+||+|.+........... ..+|+.++++++..+
T Consensus 39 ~~~~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~----~~~d~~~~i~~l~~~ 107 (270)
T 3rm3_A 39 GPVGVLLVHGFTGTPH-------SMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHD----WVASVEEGYGWLKQR 107 (270)
T ss_dssp SSEEEEEECCTTCCGG-------GTHHHHHHHHHTTCEEEECCCTTCSSCHHHHHTCCHHH----HHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCChh-------HHHHHHHHHHHCCCEEEEeCCCCCCCCccccccCCHHH----HHHHHHHHHHHHHhh
Confidence 3489999999776543 24556888999999999999999998865332211111 266788888888765
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc---------ccccccC---CCCCCccchhcC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF---------YTEKYMG---LPSEDPVGYEYS 700 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~ 700 (776)
..+++++|||+||.+++.++.++|+ ++++|+.+|.......... +...+.. .+......+...
T Consensus 108 ----~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (270)
T 3rm3_A 108 ----CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKT 182 (270)
T ss_dssp ----CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEE
T ss_pred ----CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhccccc
Confidence 4699999999999999999999999 9999999987654321110 0011000 000000001000
Q ss_pred -------------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHH
Q 004067 701 -------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEER 767 (776)
Q Consensus 701 -------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 767 (776)
+....+.++++|+|+++|++|..+++..+..+++.+. +.+++++++++++|.+.......++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 260 (270)
T 3rm3_A 183 PTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGIS--STEKEIVRLRNSYHVATLDYDQPMIIER 260 (270)
T ss_dssp EHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSC--CSSEEEEEESSCCSCGGGSTTHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcC--CCcceEEEeCCCCcccccCccHHHHHHH
Confidence 1223567888999999999999999999998888773 3467999999999988555456889999
Q ss_pred HHHHHHHh
Q 004067 768 IWEFIERT 775 (776)
Q Consensus 768 ~~~fl~~~ 775 (776)
+.+||+++
T Consensus 261 i~~fl~~~ 268 (270)
T 3rm3_A 261 SLEFFAKH 268 (270)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999876
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=186.91 Aligned_cols=232 Identities=16% Similarity=0.159 Sum_probs=155.8
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+.+.. +|..+....+.+.... ++.|+||++||.+++.. .|..++..|+++||.|+++|+||+|.+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~p~vv~~hG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~G~s 87 (315)
T 4f0j_A 19 PVHYLDFTS-QGQPLSMAYLDVAPKK---ANGRTILLMHGKNFCAG-------TWERTIDVLADAGYRVIAVDQVGFCKS 87 (315)
T ss_dssp CCEEEEEEE-TTEEEEEEEEEECCSS---CCSCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTS
T ss_pred cceeEEEec-CCCCeeEEEeecCCCC---CCCCeEEEEcCCCCcch-------HHHHHHHHHHHCCCeEEEeecCCCCCC
Confidence 466677776 5544544444332211 45689999999876644 345568889999999999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc-----
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG----- 677 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~----- 677 (776)
..... .....+++.+.+..+++.. +.++++|+|||+||.+++.++.++|++++++++.+|......
T Consensus 88 ~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 158 (315)
T 4f0j_A 88 SKPAH-------YQYSFQQLAANTHALLERL--GVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGV 158 (315)
T ss_dssp CCCSS-------CCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTC
T ss_pred CCCCc-------cccCHHHHHHHHHHHHHHh--CCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccc
Confidence 64321 2345777777777777664 446999999999999999999999999999999988642110
Q ss_pred ----cccc---------------ccccccCCCCC-Cc---------------------------cchhcCChhhhhccCC
Q 004067 678 ----YDTF---------------YTEKYMGLPSE-DP---------------------------VGYEYSSVMHHVHKMK 710 (776)
Q Consensus 678 ----~~~~---------------~~~~~~~~~~~-~~---------------------------~~~~~~~~~~~~~~i~ 710 (776)
.... ....+...... .. ......+....+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (315)
T 4f0j_A 159 PWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQ 238 (315)
T ss_dssp CCCCHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCC
T ss_pred hhhhhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCC
Confidence 0000 00000000000 00 0001122334577889
Q ss_pred CcEEEEecCCCCccChHHH------------HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 711 GKLLLVHGMIDENVHFRHT------------ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+|+|+++|++|..+|.... .+..+.+.+...++++++++++||.+ ..+..+++.+.+.+||+++
T Consensus 239 ~P~lii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~ 314 (315)
T 4f0j_A 239 MPTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTP-QIQAPERFHQALLEGLQTQ 314 (315)
T ss_dssp SCEEEEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCH-HHHSHHHHHHHHHHHHCC-
T ss_pred CCeEEEEecCCCcCccccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcch-hhhCHHHHHHHHHHHhccC
Confidence 9999999999999994332 33444444445788999999999986 5567888999999999753
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=181.46 Aligned_cols=220 Identities=12% Similarity=0.027 Sum_probs=154.1
Q ss_pred CCCceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccccccc---chhhhHHHHhC----CcEEE
Q 004067 521 LEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT---VDMRAQYLRSK----GILVW 592 (776)
Q Consensus 521 ~~~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~---~~~~~~~l~~~----G~~v~ 592 (776)
....+.+.+.+. +|..+.+++|.|++.. ..+++|+||++||+++... .|... +..+++.|++. ||.|+
T Consensus 29 ~g~~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~~P~vv~lHG~g~~~~---~~~~~~~~~~~~~~~l~~~g~~~~~~vv 104 (268)
T 1jjf_A 29 RGQVVNISYFSTATNSTRPARVYLPPGYS-KDKKYSVLYLLHGIGGSEN---DWFEGGGRANVIADNLIAEGKIKPLIIV 104 (268)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEECTTCC-TTSCBCEEEEECCTTCCTT---TTTTTTTCHHHHHHHHHHTTSSCCCEEE
T ss_pred CceEEEEEEeccccCCceEEEEEeCCCCC-CCCCccEEEEECCCCCCcc---hhhhccccHHHHHHHHHHcCCCCCEEEE
Confidence 445667778764 6788999999998752 2368999999999876543 33221 23345667665 59999
Q ss_pred EECCCCCCCCchhhhhhhhhccCCccHHH-HHHHHHHHHHcCCC--CCCcEEEEeechHHHHHHHHHhhCCCceEEEEEc
Q 004067 593 KLDNRGTARRGLKFEASIKHNCGRIDAED-QLTGAEWLIKQGLA--KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG 669 (776)
Q Consensus 593 ~~d~rg~g~~~~~~~~~~~~~~~~~~~~D-~~~~i~~l~~~~~i--d~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~ 669 (776)
++|+++.+....... .. ...+ +..++.++.++..+ |.++++|+||||||++++.++.++|++|+++++.
T Consensus 105 ~~d~~~~~~~~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 176 (268)
T 1jjf_A 105 TPNTNAAGPGIADGY----EN----FTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPI 176 (268)
T ss_dssp EECCCCCCTTCSCHH----HH----HHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEE
T ss_pred EeCCCCCCccccccH----HH----HHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEe
Confidence 999998754321100 00 0223 44556666665444 7899999999999999999999999999999999
Q ss_pred CCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCC-cEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEe
Q 004067 670 APVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 748 (776)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 748 (776)
+|..++......+ ... . .....+. |+|++||+.|..++. +..+++.+++.+.+++++++
T Consensus 177 s~~~~~~~~~~~~-----~~~----------~---~~~~~~~pp~li~~G~~D~~v~~--~~~~~~~l~~~g~~~~~~~~ 236 (268)
T 1jjf_A 177 SAAPNTYPNERLF-----PDG----------G---KAAREKLKLLFIACGTNDSLIGF--GQRVHEYCVANNINHVYWLI 236 (268)
T ss_dssp SCCTTSCCHHHHC-----TTT----------T---HHHHHHCSEEEEEEETTCTTHHH--HHHHHHHHHHTTCCCEEEEE
T ss_pred CCCCCCCchhhhc-----Ccc----------h---hhhhhcCceEEEEecCCCCCccH--HHHHHHHHHHCCCceEEEEc
Confidence 9976543211111 000 0 0111223 599999999999874 67899999999999999999
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 749 PDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 749 ~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++++|.+. .....+..+.+||.++
T Consensus 237 ~g~~H~~~---~~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 237 QGGGHDFN---VWKPGLWNFLQMADEA 260 (268)
T ss_dssp TTCCSSHH---HHHHHHHHHHHHHHHH
T ss_pred CCCCcCHh---HHHHHHHHHHHHHHhc
Confidence 99999863 2445667888898765
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=181.68 Aligned_cols=218 Identities=18% Similarity=0.183 Sum_probs=144.5
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+++.+|.++++..+.|++ .|+||++||.+++.. .|...+..|+++||.|+++|+||+|.|.....
T Consensus 3 ~~~~~g~~l~y~~~g~~~-------~~~vvllHG~~~~~~-------~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~- 67 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPRD-------GLPVVFHHGWPLSAD-------DWDNQMLFFLSHGYRVIAHDRRGHGRSDQPST- 67 (275)
T ss_dssp EECTTSCEEEEEEESCTT-------SCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS-
T ss_pred EEccCCCEEEEEEcCCCC-------CceEEEECCCCCchh-------hHHHHHHHHHHCCceEEEEcCCcCCCCCCCCC-
Confidence 566789999988886533 267999999776543 34556788999999999999999998864311
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCccc--------cc
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG--------YD 679 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~~--------~~ 679 (776)
...++++.+.+..+++.- +.+++.++||||||.+++.+++++ |++++++|+.++...... ..
T Consensus 68 -------~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 138 (275)
T 1a88_A 68 -------GHDMDTYAADVAALTEAL--DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLP 138 (275)
T ss_dssp -------CCSHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBC
T ss_pred -------CCCHHHHHHHHHHHHHHc--CCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCC
Confidence 123444444444443332 345899999999999999988776 999999998876432100 00
Q ss_pred -c---------------ccc---c-cccCCC--C--CCcc---c-------------------hhcCChhhhhccCCCcE
Q 004067 680 -T---------------FYT---E-KYMGLP--S--EDPV---G-------------------YEYSSVMHHVHKMKGKL 713 (776)
Q Consensus 680 -~---------------~~~---~-~~~~~~--~--~~~~---~-------------------~~~~~~~~~~~~i~~P~ 713 (776)
. .+. . .+.+.. . .... . +...+....+.++++|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 218 (275)
T 1a88_A 139 LEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPV 218 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCE
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccccccCCCCE
Confidence 0 000 0 011100 0 0000 0 00112223467889999
Q ss_pred EEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 714 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 714 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
|+++|++|..+|+....+.+..+ ..+.++++++++||.+ ..+.++++.+.+.+||.+
T Consensus 219 lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl~~ 275 (275)
T 1a88_A 219 LVAHGTDDQVVPYADAAPKSAEL---LANATLKSYEGLPHGM-LSTHPEVLNPDLLAFVKS 275 (275)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHH---STTEEEEEETTCCTTH-HHHCHHHHHHHHHHHHHC
T ss_pred EEEecCCCccCCcHHHHHHHHhh---CCCcEEEEcCCCCccH-HHhCHHHHHHHHHHHhhC
Confidence 99999999999987544444333 3578999999999987 456788999999999863
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=185.44 Aligned_cols=206 Identities=15% Similarity=0.152 Sum_probs=148.8
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchh-hhhh-hhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK-FEAS-IKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~-~~~~-~~~~~~~~~~~D~~~~i~~l~ 630 (776)
+.|+||++||.+++.. .|..++..|+++||.|+++|+||+|.+... .... .... ..+|+.++++++.
T Consensus 21 ~~~~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~~----~~~d~~~~i~~l~ 89 (251)
T 3dkr_A 21 TDTGVVLLHAYTGSPN-------DMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKGNPDI----WWAESSAAVAHMT 89 (251)
T ss_dssp SSEEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHHCCHHH----HHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCCCHH-------HHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCcccHHH----HHHHHHHHHHHHH
Confidence 4578999999776644 345568889999999999999999988432 2211 1111 2578888888887
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc----ccccccc---cCCCCCCccchh-----
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----TFYTEKY---MGLPSEDPVGYE----- 698 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~----- 698 (776)
.+ .++++++||||||++++.++.++|++++++++.+|........ ..+.... ..... ....+.
T Consensus 90 ~~----~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 164 (251)
T 3dkr_A 90 AK----YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSD-ESTQILAYLPG 164 (251)
T ss_dssp TT----CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHH
T ss_pred Hh----cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCc-chhhHHhhhHH
Confidence 65 4699999999999999999999999999999999886632110 0000000 00000 000000
Q ss_pred --------cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHH
Q 004067 699 --------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWE 770 (776)
Q Consensus 699 --------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 770 (776)
.......+.++++|+|+++|++|..+++..+..+++.+... .+++++++++++|.+.......++.+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~ 243 (251)
T 3dkr_A 165 QLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIA 243 (251)
T ss_dssp HHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhHHHHHHHH
Confidence 00123456778899999999999999999999998888543 567999999999988655568999999999
Q ss_pred HHHHh
Q 004067 771 FIERT 775 (776)
Q Consensus 771 fl~~~ 775 (776)
||++.
T Consensus 244 fl~~~ 248 (251)
T 3dkr_A 244 FMQQE 248 (251)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 99864
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-20 Score=181.55 Aligned_cols=215 Identities=15% Similarity=0.001 Sum_probs=150.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh-
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI- 610 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~- 610 (776)
.+| +..+.+.|.+ +.|+||++||.+++.. .+..++..|+++||.|+++|+||+|.+........
T Consensus 10 ~~g--~~~~~~~~~~------~~~~vv~~hG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~ 74 (238)
T 1ufo_A 10 LAG--LSVLARIPEA------PKALLLALHGLQGSKE-------HILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKS 74 (238)
T ss_dssp ETT--EEEEEEEESS------CCEEEEEECCTTCCHH-------HHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTS
T ss_pred cCC--EEEEEEecCC------CccEEEEECCCcccch-------HHHHHHHHHHhCCCEEEEecCCCCccCCCCCCcccc
Confidence 355 4445666654 4589999999876543 23345677888899999999999998754221100
Q ss_pred ------hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccc
Q 004067 611 ------KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE 684 (776)
Q Consensus 611 ------~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 684 (776)
.........+|+.++++++.+... .+++++|||+||.+++.++.++|+.+.++++.++..........
T Consensus 75 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--- 148 (238)
T 1ufo_A 75 PRYVEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQ--- 148 (238)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCCCTTC---
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchhhhhh---
Confidence 000001236688888888876542 69999999999999999999999998888888765432111100
Q ss_pred cccCCCCCCccchhcCChhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHH-HCCC-CeEEEEecCCCCCCCCCCcH
Q 004067 685 KYMGLPSEDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALV-AARK-PYEILIFPDERHMPRRHRDR 761 (776)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~-~~~~-~~~~~~~~~~~H~~~~~~~~ 761 (776)
...|.. ...+...++...+.++ ++|+|+++|++|..+++..+.++++.+. +.+. +++++++++++|.+. .
T Consensus 149 --~~~~~~-~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-~--- 221 (238)
T 1ufo_A 149 --VVEDPG-VLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLT-P--- 221 (238)
T ss_dssp --CCCCHH-HHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCC-H---
T ss_pred --ccCCcc-cchhhcCChhhhhhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCcccH-H---
Confidence 011110 1223344555667777 8999999999999999999999999998 7766 899999999999873 2
Q ss_pred HHHHHHHHHHHHHh
Q 004067 762 IYMEERIWEFIERT 775 (776)
Q Consensus 762 ~~~~~~~~~fl~~~ 775 (776)
+..+.+.+||.++
T Consensus 222 -~~~~~~~~~l~~~ 234 (238)
T 1ufo_A 222 -LMARVGLAFLEHW 234 (238)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 3456677777665
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-18 Score=175.75 Aligned_cols=262 Identities=14% Similarity=0.085 Sum_probs=185.6
Q ss_pred CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCC-CceeEEeeCCCCCceecCCcccceec
Q 004067 147 PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLI-NEQRQLTHGANGNTVTHGLAEYIAQE 225 (776)
Q Consensus 147 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~-g~~~~lt~~~~~~~~~~~~~~~~~~~ 225 (776)
++.|++||+.+++.+ .+..... .+..+.|||||+.|++..++.|+++++++ ++.+++......
T Consensus 21 ~~~i~~~d~~~~~~~-~~~~~~~-~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------------- 84 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMR-VVWQTPE-LFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT-------------- 84 (297)
T ss_dssp CEEEEEEETTTTEEE-EEEEESS-CCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC--------------
T ss_pred ceeEEEEeCCCCcee-eeccCCc-ceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccc--------------
Confidence 467999999999887 5554443 47889999999999999999999999999 887776543211
Q ss_pred ccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccC
Q 004067 226 EMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCG 305 (776)
Q Consensus 226 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~ 305 (776)
..+..+.|||||+.|++...+.. ....|+.++.++++...+..
T Consensus 85 --~~~~~~~~spdg~~l~~~~~~~~--------------------------------~~~~l~~~~~~~~~~~~~~~--- 127 (297)
T 2ojh_A 85 --ICNNDHGISPDGALYAISDKVEF--------------------------------GKSAIYLLPSTGGTPRLMTK--- 127 (297)
T ss_dssp --CBCSCCEECTTSSEEEEEECTTT--------------------------------SSCEEEEEETTCCCCEECCS---
T ss_pred --ccccceEECCCCCEEEEEEeCCC--------------------------------CcceEEEEECCCCceEEeec---
Confidence 01346789999999999874321 11568999998888766632
Q ss_pred CCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEE
Q 004067 306 GTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIW 385 (776)
Q Consensus 306 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (776)
.. .+..+.|||||+.+++..... ....||.++++++..+.+..+..... ...|+| ++..+++
T Consensus 128 ------~~-~~~~~~~spdg~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~s~-------dg~~l~~ 189 (297)
T 2ojh_A 128 ------NL-PSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGVETRLTHGEGRND---GPDYSP-------DGRWIYF 189 (297)
T ss_dssp ------SS-SEEEEEECTTSSEEEEEEEET-TEEEEEEEETTTCCEEECCCSSSCEE---EEEECT-------TSSEEEE
T ss_pred ------CC-CccceEECCCCCEEEEEECCC-CceEEEEEECCCCcceEcccCCCccc---cceECC-------CCCEEEE
Confidence 22 267789999999888766554 45678999998888776655432211 112222 2334666
Q ss_pred EeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCC------ceeeEEEEEeCCCCCCccccce
Q 004067 386 ASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP------LESHLYCAKLYPDWNHTLEAPV 459 (776)
Q Consensus 386 ~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~------~~~~l~~~~~~~~g~~~~~~~~ 459 (776)
.+..++...||.++++++..+.++.+...+..+ .|+|||++|++.+..... ....|+.+++. +. ...
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~--~~----~~~ 262 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERITDSAYGDWFP-HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD--GG----NVE 262 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECCCCSEEEEEE-EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT--SC----SCE
T ss_pred EecCCCCccEEEECCCCCCcEEEecCCcccCCe-EECCCCCEEEEEEcCCCCCcccccCceEEEEEecC--CC----Cce
Confidence 676678889999998888888888776655555 499999999988765321 23578888873 32 233
Q ss_pred eec---CC-CCeEEEEEcCCcCEEEEEeeCC
Q 004067 460 KLT---NG-KGKHVAVLDHNMRNFVDFHDSL 486 (776)
Q Consensus 460 ~l~---~~-~~~~~~~~spdg~~l~~~~~~~ 486 (776)
.+. .+ ..+..+.|+|||++|++.....
T Consensus 263 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 TLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 332 22 2355689999999999987654
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=177.58 Aligned_cols=194 Identities=17% Similarity=0.044 Sum_probs=140.4
Q ss_pred EEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEE-------------------CCCCCCC
Q 004067 541 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL-------------------DNRGTAR 601 (776)
Q Consensus 541 ~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~-------------------d~rg~g~ 601 (776)
++.|+.. ++.|+||++||.+++.. .|..++..|++.||.|+++ |++|+ .
T Consensus 14 ~~~p~~~----~~~~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~-~ 81 (232)
T 1fj2_A 14 AIVPAAR----KATAAVIFLHGLGDTGH-------GWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGL-S 81 (232)
T ss_dssp EEECCSS----CCSEEEEEECCSSSCHH-------HHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCC-S
T ss_pred cccCCCC----CCCceEEEEecCCCccc-------hHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccC-C
Confidence 4455443 46799999999876543 2344566677789999998 55555 2
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
+.......... ...+|+.+.++.+.+ ..++.++++++|||+||.+++.++.++|+.++++++.+|.......
T Consensus 82 ~~~~~~~~~~~----~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~--- 153 (232)
T 1fj2_A 82 PDSQEDESGIK----QAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRAS--- 153 (232)
T ss_dssp TTCCBCHHHHH----HHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGG---
T ss_pred cccccccHHHH----HHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCcc---
Confidence 21111111111 125567777777766 5567789999999999999999999999999999999987643211
Q ss_pred ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCC--eEEEEecCCCCCCCCCC
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP--YEILIFPDERHMPRRHR 759 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~--~~~~~~~~~~H~~~~~~ 759 (776)
+ +. .......++.|+|+++|++|..+++..+.++++.+.+.+.. ++++++++++|.+
T Consensus 154 ----~---~~----------~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~H~~---- 212 (232)
T 1fj2_A 154 ----F---PQ----------GPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSS---- 212 (232)
T ss_dssp ----S---CS----------SCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSC----
T ss_pred ----c---cc----------cccccccCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCccc----
Confidence 0 00 01124567789999999999999999999999999888754 9999999999987
Q ss_pred cHHHHHHHHHHHHHHhC
Q 004067 760 DRIYMEERIWEFIERTL 776 (776)
Q Consensus 760 ~~~~~~~~~~~fl~~~l 776 (776)
..+..+.+.+||+++|
T Consensus 213 -~~~~~~~i~~~l~~~l 228 (232)
T 1fj2_A 213 -CQQEMMDVKQFIDKLL 228 (232)
T ss_dssp -CHHHHHHHHHHHHHHS
T ss_pred -CHHHHHHHHHHHHHhc
Confidence 2334589999998875
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-20 Score=185.76 Aligned_cols=216 Identities=22% Similarity=0.258 Sum_probs=141.9
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
++.+.||.++++..+.. .|.||++||.+++.. .|...+..|+++||.|+++|+||+|.|.....
T Consensus 2 ~~~~~~g~~l~y~~~G~---------g~~vvllHG~~~~~~-------~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~ 65 (271)
T 3ia2_A 2 TFVAKDGTQIYFKDWGS---------GKPVLFSHGWLLDAD-------MWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWT 65 (271)
T ss_dssp EEECTTSCEEEEEEESS---------SSEEEEECCTTCCGG-------GGHHHHHHHHTTTCEEEEECCTTSTTSCCCSS
T ss_pred eEEcCCCCEEEEEccCC---------CCeEEEECCCCCcHH-------HHHHHHHHHHhCCceEEEecCCCCccCCCCCC
Confidence 36677999998887741 146889999876643 34556778888999999999999998864321
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCCCCcccccc------
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDGYDT------ 680 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~~~~~~~~~------ 680 (776)
...++++.+.+..+++.. +.+++.++||||||++++.+++. .|++++++++.++.........
T Consensus 66 --------~~~~~~~a~d~~~~l~~l--~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 135 (271)
T 3ia2_A 66 --------GNDYDTFADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGV 135 (271)
T ss_dssp --------CCSHHHHHHHHHHHHHHH--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSB
T ss_pred --------CCCHHHHHHHHHHHHHHh--CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccc
Confidence 122334444333333322 34689999999999877666655 4899999998876532110000
Q ss_pred -------c--------------ccccccCCC---CCCc----------------------cchhcCChhhhhccCCCcEE
Q 004067 681 -------F--------------YTEKYMGLP---SEDP----------------------VGYEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 681 -------~--------------~~~~~~~~~---~~~~----------------------~~~~~~~~~~~~~~i~~P~l 714 (776)
. +...+.... .... ..+...+....+.++++|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~L 215 (271)
T 3ia2_A 136 PLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTL 215 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSCEE
T ss_pred cHHHHHHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCCEE
Confidence 0 000000000 0000 00011122334678899999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++|++|.++|+..+.++...+ ..+.++.+++++||.+ ..+.++++.+.+.+||.
T Consensus 216 vi~G~~D~~~p~~~~~~~~~~~---~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 216 VIHGDGDQIVPFETTGKVAAEL---IKGAELKVYKDAPHGF-AVTHAQQLNEDLLAFLK 270 (271)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTH-HHHTHHHHHHHHHHHHT
T ss_pred EEEeCCCCcCChHHHHHHHHHh---CCCceEEEEcCCCCcc-cccCHHHHHHHHHHHhh
Confidence 9999999999998765555544 3567999999999987 56778899999999985
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=206.60 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=165.8
Q ss_pred EcCCCcE--EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccc--------------------------------------
Q 004067 530 QANDGTV--LYGALYKPDESRYGPPPYKTLISVYGGPCVQLV-------------------------------------- 569 (776)
Q Consensus 530 ~~~dg~~--l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~-------------------------------------- 569 (776)
+..||.+ |.+.+|+|++. +++|+||..|+.......
T Consensus 179 ~~~DG~~d~L~a~l~~P~~~----~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 254 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKST----EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKE 254 (763)
T ss_dssp TTCSSSCCEEEEEEEECCCS----SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCCC----CcccEEEecCCcCCCCcccccccccccccccccccCcccccccccccccccccccc
Confidence 4579998 99999999874 589999988875432100
Q ss_pred -------ccccccc-chhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC--------
Q 004067 570 -------CDSWINT-VDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG-------- 633 (776)
Q Consensus 570 -------~~~~~~~-~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-------- 633 (776)
...|... .....++|+++||+|+++|+||+|.|+..+. .++..+.+|+.++++|+..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~~-----~~~~~e~~D~~a~IdwL~~~~~~~~d~~~ 329 (763)
T 1lns_A 255 LPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQT-----SGDYQQIYSMTAVIDWLNGRARAYTSRKK 329 (763)
T ss_dssp CCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCC-----TTSHHHHHHHHHHHHHHTTSSCEESSTTC
T ss_pred ccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcCC-----CCCHHHHHHHHHHHHHHhhcccccccccc
Confidence 0011000 0123578999999999999999998865421 222245789999999998531
Q ss_pred ------CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-c--------cccc------------cc
Q 004067 634 ------LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T--------FYTE------------KY 686 (776)
Q Consensus 634 ------~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-~--------~~~~------------~~ 686 (776)
..+.++|+++|+||||++++.+|+.+|+.++++|+.+|+.++..+. . .+.. ..
T Consensus 330 ~~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~ 409 (763)
T 1lns_A 330 THEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRN 409 (763)
T ss_dssp CCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGG
T ss_pred cccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhh
Confidence 1245799999999999999999999999999999999987643210 0 0000 00
Q ss_pred c-------------------------CCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 687 M-------------------------GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 687 ~-------------------------~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
. ..+ .....|...++...+.+|++|+|++||..|..+++.++.++++++.. +.
T Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp~~~a~~l~~al~~-~~ 487 (763)
T 1lns_A 410 LDGADFLKGNAEYEKRLAEMTAALDRKSG-DYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GH 487 (763)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHCTTTC-CCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TC
T ss_pred cCcchhhhHHHHHHHHHHHHHhhhhhccC-chhHHhhccChhhHhhcCCCCEEEEEECCCCCCChHHHHHHHHhhcc-CC
Confidence 0 000 01123345566778899999999999999999999999999999866 55
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+.++++ ++++|.........++.+.+.+||+++|
T Consensus 488 ~~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~L 521 (763)
T 1lns_A 488 AKHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKL 521 (763)
T ss_dssp CEEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHH
T ss_pred CeEEEE-eCCcccCccccchHHHHHHHHHHHHHHh
Confidence 666655 5679986333234456899999999875
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-20 Score=187.08 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=160.3
Q ss_pred ceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC--
Q 004067 524 PDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA-- 600 (776)
Q Consensus 524 ~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g-- 600 (776)
.+.+.+.+. .|..+.+.+|.|++.. .+++|+||++||+++... .|.. ...+...+++.||.|+++|.++.|
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~--~~~~p~vv~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~vv~~d~~~rg~~ 95 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE--NRPLGVIYWLSGLTCTEQ---NFIT-KSGFQRYAAEHQVIVVAPDTSPRGEQ 95 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT--CCCEEEEEEECCTTCCSH---HHHH-HSCTHHHHHHHTCEEEEECSSCCSTT
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC--CCCCCEEEEEcCCCCCcc---chhh-cccHHHHHhhCCeEEEEecccccccc
Confidence 444555554 6788999999998742 368999999999876543 2321 112356777889999999965332
Q ss_pred CCch---------hhh-hhhhhcc-CCccHHHH-H-HHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEE
Q 004067 601 RRGL---------KFE-ASIKHNC-GRIDAEDQ-L-TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV 667 (776)
Q Consensus 601 ~~~~---------~~~-~~~~~~~-~~~~~~D~-~-~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v 667 (776)
..+. .+. ......+ ......+. . ..+.++.+... +.++++|+||||||++|+.++.++|++|++++
T Consensus 96 ~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~ 174 (283)
T 4b6g_A 96 VPNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKHFP-TNGKRSIMGHSMGGHGALVLALRNQERYQSVS 174 (283)
T ss_dssp SCCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHSC-EEEEEEEEEETHHHHHHHHHHHHHGGGCSCEE
T ss_pred ccccccccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEChhHHHHHHHHHhCCccceeEE
Confidence 1111 100 0000000 00111222 2 33444444432 46799999999999999999999999999999
Q ss_pred EcCCCCCccccc--ccccccccCCCCCCccchhcCChhhhhccCC--CcEEEEecCCCCccChH-HHHHHHHHHHHCCCC
Q 004067 668 SGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFR-HTARLINALVAARKP 742 (776)
Q Consensus 668 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~~ 742 (776)
+.+|..+..... ......+++. ....+...++...+.+++ .|+|++||+.|.+++.. .+..+++++++.+.+
T Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~g~~ 251 (283)
T 4b6g_A 175 AFSPILSPSLVPWGEKAFTAYLGK---DREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAANQP 251 (283)
T ss_dssp EESCCCCGGGSHHHHHHHHHHHCS---CGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHHTCC
T ss_pred EECCccccccCcchhhhHHhhcCC---chHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHHHcCCC
Confidence 999987654211 0011122222 234455667766666665 49999999999998863 378999999999999
Q ss_pred eEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 743 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 743 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++++++|+++|.+. .........++|+.++|
T Consensus 252 ~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l 282 (283)
T 4b6g_A 252 VDVRFHKGYDHSYY---FIASFIGEHIAYHAAFL 282 (283)
T ss_dssp CEEEEETTCCSSHH---HHHHHHHHHHHHHHTTC
T ss_pred ceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhc
Confidence 99999999999763 34566788899998875
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=182.17 Aligned_cols=217 Identities=18% Similarity=0.215 Sum_probs=143.9
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+.+.+|..+++..+.|++ .|+||++||.+++.. .|...+..|+++||.|+++|+||+|.|.....
T Consensus 4 ~~~~~g~~l~y~~~g~~~-------~~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~vi~~D~~G~G~S~~~~~- 68 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPRD-------APVIHFHHGWPLSAD-------DWDAQLLFFLAHGYRVVAHDRRGHGRSSQVWD- 68 (276)
T ss_dssp EECTTSCEEEEEEESCTT-------SCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS-
T ss_pred EECCCCcEEEEEecCCCC-------CCeEEEECCCCcchh-------HHHHHHHHHHhCCCEEEEecCCCCCCCCCCCC-
Confidence 556789899988886533 267999999876543 34556788999999999999999999864211
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCccc----------
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG---------- 677 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~~---------- 677 (776)
...++++.+.+..+++.- +.+++.|+||||||.+++.+++.+ |++++++|+.++......
T Consensus 69 -------~~~~~~~~~d~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 139 (276)
T 1zoi_A 69 -------GHDMDHYADDVAAVVAHL--GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLP 139 (276)
T ss_dssp -------CCSHHHHHHHHHHHHHHH--TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCCSSCTTSBC
T ss_pred -------CCCHHHHHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCcccccccccccccc
Confidence 123444444444443332 345899999999999999988877 999999998876432100
Q ss_pred ---ccc-----------cc---cc-cccCCC--C--CCcc---c-------------------hhcCChhhhhccCCCcE
Q 004067 678 ---YDT-----------FY---TE-KYMGLP--S--EDPV---G-------------------YEYSSVMHHVHKMKGKL 713 (776)
Q Consensus 678 ---~~~-----------~~---~~-~~~~~~--~--~~~~---~-------------------~~~~~~~~~~~~i~~P~ 713 (776)
+.. .+ .. .+.+.. . .... . +...+....+.++++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 219 (276)
T 1zoi_A 140 KSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPV 219 (276)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhhccccCCCE
Confidence 000 00 00 011100 0 0000 0 00112233467889999
Q ss_pred EEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 714 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 714 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
|+++|++|..+|+....+.+..+ ..+.++++++++||.+ ..+.++++.+.+.+||.
T Consensus 220 l~i~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 220 LVMHGDDDQIVPYENSGVLSAKL---LPNGALKTYKGYPHGM-PTTHADVINADLLAFIR 275 (276)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHH---STTEEEEEETTCCTTH-HHHTHHHHHHHHHHHHT
T ss_pred EEEEcCCCcccChHHHHHHHHhh---CCCceEEEcCCCCCch-hhhCHHHHHHHHHHHhc
Confidence 99999999999987444443333 2578999999999987 45678899999999985
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=186.79 Aligned_cols=216 Identities=17% Similarity=0.132 Sum_probs=148.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCCCchhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
+|..+ +.|.... .+.|+||++|||+....... .+..++..|+. .||.|+++|||+++....
T Consensus 66 ~g~~~----~~p~~~~---~~~~~vv~~HGgg~~~g~~~----~~~~~~~~la~~~g~~v~~~dyr~~~~~~~------- 127 (322)
T 3k6k_A 66 GGVPC----IRQATDG---AGAAHILYFHGGGYISGSPS----THLVLTTQLAKQSSATLWSLDYRLAPENPF------- 127 (322)
T ss_dssp TTEEE----EEEECTT---CCSCEEEEECCSTTTSCCHH----HHHHHHHHHHHHHTCEEEEECCCCTTTSCT-------
T ss_pred CCEeE----EecCCCC---CCCeEEEEEcCCcccCCChH----HHHHHHHHHHHhcCCEEEEeeCCCCCCCCC-------
Confidence 66555 4554421 23345999999763221111 23344566665 599999999998775431
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCc----eEEEEEcCCCCCccccccccc----
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV----FQCAVSGAPVTSWDGYDTFYT---- 683 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~----~~~~v~~~~~~~~~~~~~~~~---- 683 (776)
...++|+.++++++.++ .++.++|+|+|+||||.+|+.++.++++. ++++++.+|+.++......+.
T Consensus 128 ----~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~ 202 (322)
T 3k6k_A 128 ----PAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRWSNSNLAD 202 (322)
T ss_dssp ----THHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCSHHHHHTGG
T ss_pred ----chHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCccchhhccC
Confidence 12378999999999987 45889999999999999999999886654 899999999887542211110
Q ss_pred --------------ccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEec
Q 004067 684 --------------EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 749 (776)
Q Consensus 684 --------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 749 (776)
..+.+.... .....+++.......+|+|+++|++|.+ ..++..+++++++.++++++++||
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~sp~~~~~~~~pP~li~~G~~D~~--~~~~~~~~~~l~~~g~~~~l~~~~ 277 (322)
T 3k6k_A 203 RDFLAEPDTLGEMSELYVGGEDR---KNPLISPVYADLSGLPEMLIHVGSEEAL--LSDSTTLAERAGAAGVSVELKIWP 277 (322)
T ss_dssp GCSSSCHHHHHHHHHHHHTTSCT---TCTTTCGGGSCCTTCCCEEEEEESSCTT--HHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CCCcCCHHHHHHHHHHhcCCCCC---CCCcCCcccccccCCCcEEEEECCcCcc--HHHHHHHHHHHHHCCCCEEEEEEC
Confidence 111111000 0011233332223336999999999987 467889999999999999999999
Q ss_pred CCCCCCCC----CCcHHHHHHHHHHHHHHhC
Q 004067 750 DERHMPRR----HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 750 ~~~H~~~~----~~~~~~~~~~~~~fl~~~l 776 (776)
+++|.+.. .+...++++.+.+||+++|
T Consensus 278 g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (322)
T 3k6k_A 278 DMPHVFQMYGKFVNAADISIKEICHWISARI 308 (322)
T ss_dssp TCCTTGGGGTTTCHHHHHHHHHHHHHHHTTC
T ss_pred CCccccccccccChHHHHHHHHHHHHHHHHH
Confidence 99998732 2346789999999999875
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-20 Score=183.41 Aligned_cols=237 Identities=14% Similarity=0.004 Sum_probs=158.7
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCC---CCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESR---YGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 598 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~---~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg 598 (776)
..+.+++.+. .|..+.+++|.|++.. ...+++|+||++||++++.. .|... ......+++.|+.|+++|+++
T Consensus 6 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~---~~~~~-~~~~~~~~~~~~~v~~~~~~~ 81 (263)
T 2uz0_A 6 AVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNHN---SWLKR-TNVERLLRGTNLIVVMPNTSN 81 (263)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCTT---HHHHH-SCHHHHTTTCCCEEEECCCTT
T ss_pred eEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCHH---HHHhc-cCHHHHHhcCCeEEEEECCCC
Confidence 4566777654 6788999999998741 02367899999999876543 22210 012344456899999999998
Q ss_pred CCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc
Q 004067 599 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678 (776)
Q Consensus 599 ~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 678 (776)
++.+......... ....+|+...++.+..+..+|.++++|+|||+||++++.++. +|++++++++.+|..++..+
T Consensus 82 ~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~ 156 (263)
T 2uz0_A 82 GWYTDTQYGFDYY----TALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNF 156 (263)
T ss_dssp STTSBCTTSCBHH----HHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSC
T ss_pred CccccCCCcccHH----HHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhc
Confidence 7654321100000 011334555454443323457789999999999999999999 99999999999998876542
Q ss_pred ccc--------ccccccCCCCCCccchhcCChhhhhccCC--CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEe
Q 004067 679 DTF--------YTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 748 (776)
Q Consensus 679 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 748 (776)
... +...+++.+ ....+...++...+.++. .|+|++||+.|.+++ .+..+++.+++.+.+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~l~~~g~~~~~~~~ 232 (263)
T 2uz0_A 157 SPESQNLGSPAYWRGVFGEI--RDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLYE--ANNLAVKNLKKLGFDVTYSHS 232 (263)
T ss_dssp CGGGTTCSCHHHHHHHHCCC--SCTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTHH--HHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccccccchhHHHHcCCh--hhhccccCCHHHHHHhccCCCeEEEEeCCCchhhH--HHHHHHHHHHHCCCCeEEEEC
Confidence 210 001111211 112344556766777775 799999999999874 568899999999999999999
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 749 PDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 749 ~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++ +|.+. ...+....+.+||.++|
T Consensus 233 ~g-~H~~~---~~~~~~~~~~~~l~~~l 256 (263)
T 2uz0_A 233 AG-THEWY---YWEKQLEVFLTTLPIDF 256 (263)
T ss_dssp SC-CSSHH---HHHHHHHHHHHHSSSCC
T ss_pred CC-CcCHH---HHHHHHHHHHHHHHhhc
Confidence 99 99762 23567788899987654
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=193.47 Aligned_cols=250 Identities=15% Similarity=0.116 Sum_probs=164.5
Q ss_pred hhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCC-CCCCceEEEEEcCCCCccccccccccc--chhhhHHHHhCCcEEE
Q 004067 516 IKRLQLEPPDIVQIQANDGTVLYGALYKPDESRY-GPPPYKTLISVYGGPCVQLVCDSWINT--VDMRAQYLRSKGILVW 592 (776)
Q Consensus 516 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~-~~~~~p~vl~~HG~~~~~~~~~~~~~~--~~~~~~~l~~~G~~v~ 592 (776)
+....+ ..+...+.+.||..+.++.+.|..... ..++.|+||++||.+++.. .|... ...++..|+++||.|+
T Consensus 20 ~~~~~~-~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~---~~~~~~~~~~~a~~l~~~G~~vi 95 (377)
T 1k8q_A 20 ITYWGY-PAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASAT---NWISNLPNNSLAFILADAGYDVW 95 (377)
T ss_dssp HHHTTC-CCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGG---GGSSSCTTTCHHHHHHHTTCEEE
T ss_pred HHHcCC-CceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCchh---hhhcCCCcccHHHHHHHCCCCEE
Confidence 333444 578888999999999999997754210 0125689999999877654 23221 1234568999999999
Q ss_pred EECCCCCCCCchhhhh-hhhh---ccCC-ccHH-HHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC---ce
Q 004067 593 KLDNRGTARRGLKFEA-SIKH---NCGR-IDAE-DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VF 663 (776)
Q Consensus 593 ~~d~rg~g~~~~~~~~-~~~~---~~~~-~~~~-D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~---~~ 663 (776)
++|+||+|.+...... .... .+.. .... |+.+++++++++. +.++++++||||||.+++.++.++|+ ++
T Consensus 96 ~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v 173 (377)
T 1k8q_A 96 LGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRI 173 (377)
T ss_dssp ECCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTE
T ss_pred EecCCCCCCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCchhhhhh
Confidence 9999999988642100 0000 0000 1133 7777888877653 34689999999999999999999998 79
Q ss_pred EEEEEcCCCCCcccccccc---c-------ccccC---------------------------------------------
Q 004067 664 QCAVSGAPVTSWDGYDTFY---T-------EKYMG--------------------------------------------- 688 (776)
Q Consensus 664 ~~~v~~~~~~~~~~~~~~~---~-------~~~~~--------------------------------------------- 688 (776)
+++|+.+|...+......+ . ...++
T Consensus 174 ~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (377)
T 1k8q_A 174 KTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNM 253 (377)
T ss_dssp EEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCG
T ss_pred hEEEEeCCchhcccchhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCcccCCH
Confidence 9999998875432111000 0 00000
Q ss_pred ---------CCCCCc-cc------------hhcC----------------ChhhhhccCCCcEEEEecCCCCccChHHHH
Q 004067 689 ---------LPSEDP-VG------------YEYS----------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTA 730 (776)
Q Consensus 689 ---------~~~~~~-~~------------~~~~----------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 730 (776)
.+.... .. +... .+...+.++++|+|+++|++|.++|+..+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~ 333 (377)
T 1k8q_A 254 SRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVD 333 (377)
T ss_dssp GGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccCHHHHH
Confidence 000000 00 0000 012237788999999999999999999888
Q ss_pred HHHHHHHHCCCCeE-EEEecCCCCCCCC--CCcHHHHHHHHHHHHHHh
Q 004067 731 RLINALVAARKPYE-ILIFPDERHMPRR--HRDRIYMEERIWEFIERT 775 (776)
Q Consensus 731 ~~~~~l~~~~~~~~-~~~~~~~~H~~~~--~~~~~~~~~~~~~fl~~~ 775 (776)
.+++.+ .+.. +++++++||.... .+..+++.+.+.+||+++
T Consensus 334 ~~~~~~----~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 334 LLLSKL----PNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp HHHTTC----TTEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred HHHHhC----cCcccEEecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 877765 3444 8999999998632 467889999999999864
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=181.85 Aligned_cols=189 Identities=15% Similarity=0.019 Sum_probs=134.6
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhC--CcEEEEECCCC---CCCCchhhh-----hhh----hhccCCc
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRG---TARRGLKFE-----ASI----KHNCGRI 617 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rg---~g~~~~~~~-----~~~----~~~~~~~ 617 (776)
++.|+||++||.+++.. .+..+++.|+.. ++.+++|+-+. ..+.|..|. ... .......
T Consensus 64 ~~~plVI~LHG~G~~~~-------~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~~~~~~~ 136 (285)
T 4fhz_A 64 EATSLVVFLHGYGADGA-------DLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAAAEGMAA 136 (285)
T ss_dssp CCSEEEEEECCTTBCHH-------HHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHH-------HHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchhhHHHHH
Confidence 67899999999655432 223345666543 88999987531 011121111 000 0000001
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccch
Q 004067 618 DAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 697 (776)
Q Consensus 618 ~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (776)
...++.+.++.+.++..+|.+||+|+|+|+||++++.++.++|+.+++++++++..... .
T Consensus 137 ~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~~------------------~-- 196 (285)
T 4fhz_A 137 AARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLAP------------------E-- 196 (285)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSCH------------------H--
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccCc------------------h--
Confidence 23456666777777777899999999999999999999999999999999987742110 0
Q ss_pred hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 698 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 698 ~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
......+.+.|+|++||+.|.+||++.++++++.|++.|.++++++|++.+|.+. .+.+..+.+||+++|
T Consensus 197 ----~~~~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i~-----~~~l~~~~~fL~~~L 266 (285)
T 4fhz_A 197 ----RLAEEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGIA-----PDGLSVALAFLKERL 266 (285)
T ss_dssp ----HHHHHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHHHHC
T ss_pred ----hhhhhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-----HHHHHHHHHHHHHHC
Confidence 0111233467999999999999999999999999999999999999999999873 344688999999886
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-19 Score=171.88 Aligned_cols=184 Identities=13% Similarity=-0.010 Sum_probs=134.6
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHh--CCcEEEEECCCC-------------------CCCCchhhhhhh
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRG-------------------TARRGLKFEASI 610 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~d~rg-------------------~g~~~~~~~~~~ 610 (776)
++.|+||++||.+++.. .+..++..|++ .||.|+++|+|| +|.+........
T Consensus 12 ~~~~~vv~~HG~~~~~~-------~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~ 84 (218)
T 1auo_A 12 PADACVIWLHGLGADRY-------DFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEEL 84 (218)
T ss_dssp CCSEEEEEECCTTCCTT-------TTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHH
T ss_pred CCCcEEEEEecCCCChh-------hHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccccchHHH
Confidence 46799999999776543 34456788888 999999998763 221111111000
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHh-hCCCceEEEEEcCCCCCcccccccccccccCC
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA-RFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 689 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (776)
. ...+++...++.+.+ ..++.++++++||||||.+++.++. ++|++++++++.+|..... . .
T Consensus 85 -~----~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~--------~---~ 147 (218)
T 1auo_A 85 -E----VSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF--------G---D 147 (218)
T ss_dssp -H----HHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC--------C---T
T ss_pred -H----HHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc--------h---h
Confidence 0 114455555565554 3567889999999999999999999 9999999999999876530 0 0
Q ss_pred CCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHH
Q 004067 690 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIW 769 (776)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 769 (776)
+. . ....+++.|+|+++|++|..++++.++.+++.+.+.+.++++++++ ++|.+. .+..+.+.
T Consensus 148 ~~----~-------~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~~~~ 210 (218)
T 1auo_A 148 EL----E-------LSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIG 210 (218)
T ss_dssp TC----C-------CCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHH
T ss_pred hh----h-------hhhcccCCCEEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEec-CCCccC-----HHHHHHHH
Confidence 00 0 0124567899999999999999999999999999888899999999 999872 23467888
Q ss_pred HHHHHhC
Q 004067 770 EFIERTL 776 (776)
Q Consensus 770 ~fl~~~l 776 (776)
+||.++|
T Consensus 211 ~~l~~~l 217 (218)
T 1auo_A 211 AWLAARL 217 (218)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8988764
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=173.19 Aligned_cols=181 Identities=12% Similarity=-0.047 Sum_probs=134.5
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEEC-------------CCCCCCCchhhhhhhhhccCCcc
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLD-------------NRGTARRGLKFEASIKHNCGRID 618 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d-------------~rg~g~~~~~~~~~~~~~~~~~~ 618 (776)
.+.| ||++||.+++.. .|..++..|+ .+|.|+++| ++|+|..+...... ......
T Consensus 15 ~~~p-vv~lHG~g~~~~-------~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~---~~~~~~ 82 (209)
T 3og9_A 15 DLAP-LLLLHSTGGDEH-------QLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDL---ESLDEE 82 (209)
T ss_dssp TSCC-EEEECCTTCCTT-------TTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCH---HHHHHH
T ss_pred CCCC-EEEEeCCCCCHH-------HHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCH---HHHHHH
Confidence 4668 999999766543 2344566666 789999999 55554432211100 000123
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchh
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 698 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (776)
.+++.+.++.+.++..+|.++++|+||||||++++.++.++|++++++++.+|.......
T Consensus 83 ~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-------------------- 142 (209)
T 3og9_A 83 TDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFE-------------------- 142 (209)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCCC--------------------
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCccc--------------------
Confidence 556677777777766678899999999999999999999999999999999886432100
Q ss_pred cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 699 YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 699 ~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
......+.|+|++||++|.++|++.+.++++.+++.+.++++++++ ++|.+. .+....+.+||+++
T Consensus 143 -----~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~-----~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 143 -----QTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESS-LGHQLT-----QEEVLAAKKWLTET 208 (209)
T ss_dssp -----CCCCCTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEECS-STTSCC-----HHHHHHHHHHHHHH
T ss_pred -----ccccccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEcC-CCCcCC-----HHHHHHHHHHHHhh
Confidence 0123456899999999999999999999999999999999999998 699873 34568899999875
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=186.62 Aligned_cols=225 Identities=16% Similarity=0.117 Sum_probs=158.0
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~ 601 (776)
..+.+.++..+| .+.+++| +.. ++.|+||++||++...... ..+..++..|+ ..||.|+++|+||+|.
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~~-----~~~p~vv~~HGgg~~~g~~----~~~~~~~~~la~~~g~~Vv~~dyrg~g~ 123 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQK-----PDSPVLVYYHGGGFVICSI----ESHDALCRRIARLSNSTVVSVDYRLAPE 123 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ESS-----SSEEEEEEECCSTTTSCCT----GGGHHHHHHHHHHHTSEEEEEECCCTTT
T ss_pred eEEEEEecCCCC-cEEEEEE-cCC-----CCceEEEEECCcccccCCh----hHhHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 477888888777 7999998 432 4679999999987321111 12344567777 6899999999999987
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCCc----eEEEEEcCCCCC
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPDV----FQCAVSGAPVTS 674 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~~----~~~~v~~~~~~~ 674 (776)
+..+ ....|+.++++++.+. ..+++++|+|+|||+||.+++.++.++++. ++++++.+|..+
T Consensus 124 ~~~p-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~ 192 (311)
T 1jji_A 124 HKFP-----------AAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVN 192 (311)
T ss_dssp SCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCC
T ss_pred CCCC-----------CcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccC
Confidence 7521 1256888888888775 246778999999999999999999877655 899999999876
Q ss_pred cccccccc------------------cccccCCCCCCccchhcCChhh-hhccCCCcEEEEecCCCCccChHHHHHHHHH
Q 004067 675 WDGYDTFY------------------TEKYMGLPSEDPVGYEYSSVMH-HVHKMKGKLLLVHGMIDENVHFRHTARLINA 735 (776)
Q Consensus 675 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 735 (776)
.......+ ...++..... ......+++. .+..+ .|+|+++|+.|.+++ .+..++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~~--~~~~~~~~ 267 (311)
T 1jji_A 193 FVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREED--KFNPLASVIFADLENL-PPALIITAEYDPLRD--EGEVFGQM 267 (311)
T ss_dssp SSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGG--GGCTTTSGGGSCCTTC-CCEEEEEEEECTTHH--HHHHHHHH
T ss_pred CCCCCccHHHhcCCCccCCHHHHHHHHHHhCCCCcc--CCCcccCcccccccCC-ChheEEEcCcCcchH--HHHHHHHH
Confidence 53211100 0111111000 0001112222 12222 599999999999873 67888999
Q ss_pred HHHCCCCeEEEEecCCCCCCCC----CCcHHHHHHHHHHHHHH
Q 004067 736 LVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIER 774 (776)
Q Consensus 736 l~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~fl~~ 774 (776)
+++.+.+++++++++++|.+.. .....++.+.+.+||++
T Consensus 268 l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 268 LRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998742 23457788999999975
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-19 Score=179.16 Aligned_cols=215 Identities=19% Similarity=0.230 Sum_probs=142.6
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+++.+|.++++..+. ..|+||++||.+++.. .|...+..|+++||.|+++|+||+|.|.....
T Consensus 3 ~~~~~g~~l~y~~~g---------~~~~vvllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~~- 65 (273)
T 1a8s_A 3 FTTRDGTQIYYKDWG---------SGQPIVFSHGWPLNAD-------SWESQMIFLAAQGYRVIAHDRRGHGRSSQPWS- 65 (273)
T ss_dssp EECTTSCEEEEEEES---------CSSEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS-
T ss_pred EecCCCcEEEEEEcC---------CCCEEEEECCCCCcHH-------HHhhHHhhHhhCCcEEEEECCCCCCCCCCCCC-
Confidence 566788888877663 1257999999876543 34556788999999999999999998864311
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCccc--------cc
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG--------YD 679 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~~--------~~ 679 (776)
...++++.+.+..+++.- +.+++.|+||||||.+++.+++++ |++++++|+.++...... ..
T Consensus 66 -------~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 136 (273)
T 1a8s_A 66 -------GNDMDTYADDLAQLIEHL--DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLP 136 (273)
T ss_dssp -------CCSHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred -------CCCHHHHHHHHHHHHHHh--CCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCc
Confidence 123445555544444432 446899999999999999877766 899999998876432100 00
Q ss_pred -c---------------ccc---c-cccCCC--C--CCcc---c-------------------hhcCChhhhhccCCCcE
Q 004067 680 -T---------------FYT---E-KYMGLP--S--EDPV---G-------------------YEYSSVMHHVHKMKGKL 713 (776)
Q Consensus 680 -~---------------~~~---~-~~~~~~--~--~~~~---~-------------------~~~~~~~~~~~~i~~P~ 713 (776)
. .+. . .+.+.. . .... . +...+....+.++++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 216 (273)
T 1a8s_A 137 MEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPT 216 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCE
T ss_pred HHHHHHHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCCE
Confidence 0 000 0 011100 0 0000 0 01112233467889999
Q ss_pred EEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 714 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 714 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
|+++|++|..+|+....+....+ ..+.++++++++||.+ ..+.++++.+.+.+||.
T Consensus 217 lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 217 LVVHGDADQVVPIEASGIASAAL---VKGSTLKIYSGAPHGL-TDTHKDQLNADLLAFIK 272 (273)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHH---STTCEEEEETTCCSCH-HHHTHHHHHHHHHHHHH
T ss_pred EEEECCCCccCChHHHHHHHHHh---CCCcEEEEeCCCCCcc-hhhCHHHHHHHHHHHHh
Confidence 99999999999987544444333 2467999999999987 45678899999999986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-17 Score=174.70 Aligned_cols=258 Identities=11% Similarity=0.012 Sum_probs=174.7
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCC
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCS 158 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~ 158 (776)
..|++||+++++....... +..+..+.|+| ||++|++. .++.|++||+.++
T Consensus 12 ~~v~v~d~~~~~~~~~~~~------------------------~~~~~~~~~s~---dg~~l~~~~~~d~~i~v~d~~~~ 64 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPV------------------------GSNPMGAVISP---DGTKVYVANAHSNDVSIIDTATN 64 (391)
T ss_dssp TEEEEEETTTTEEEEEEEC------------------------SSSEEEEEECT---TSSEEEEEEGGGTEEEEEETTTT
T ss_pred CEEEEEECCCCeEEEEeec------------------------CCCcceEEECC---CCCEEEEECCCCCeEEEEECCCC
Confidence 5799999999887655532 23578899999 99998766 6789999999998
Q ss_pred ccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEEC
Q 004067 159 KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWS 236 (776)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 236 (776)
+....+.... .+..++|||||++|++... +.|+++|+.+++.......+.. ...++|+
T Consensus 65 ~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------------------~~~~~~s 124 (391)
T 1l0q_A 65 NVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS------------------PLGLALS 124 (391)
T ss_dssp EEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS------------------EEEEEEC
T ss_pred eEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC------------------cceEEEC
Confidence 8773443332 4788999999999988874 5799999999987665543321 3478899
Q ss_pred CCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceE
Q 004067 237 LDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYL 316 (776)
Q Consensus 237 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 316 (776)
|||+.|++..... ..|++||+.+++...... .....
T Consensus 125 ~dg~~l~~~~~~~-----------------------------------~~v~~~d~~~~~~~~~~~---------~~~~~ 160 (391)
T 1l0q_A 125 PDGKKLYVTNNGD-----------------------------------KTVSVINTVTKAVINTVS---------VGRSP 160 (391)
T ss_dssp TTSSEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEEE---------CCSSE
T ss_pred CCCCEEEEEeCCC-----------------------------------CEEEEEECCCCcEEEEEe---------cCCCc
Confidence 9999887665321 358999999887655421 22345
Q ss_pred EEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEE
Q 004067 317 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLY 396 (776)
Q Consensus 317 ~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~ 396 (776)
..+.|+|||+.+++... ....|++||+.+++............ .-.|+| ++..++..+...+...|+
T Consensus 161 ~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~-------~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEAAPS---GIAVNP-------EGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSSEEE---EEEECT-------TSSEEEEEEECSSCCEEE
T ss_pred ceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCCCcc---ceEECC-------CCCEEEEEecCcCCCcEE
Confidence 78999999997765542 23469999999987766554332111 112222 223344444322345999
Q ss_pred EEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 397 LHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 397 ~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
+||+.+++..........+..+ .|++||+.|++....++. +.+|.+
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~s~~~d~~--v~v~d~ 273 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGPDPAGI-AVTPDGKKVYVALSFXNT--VSVIDT 273 (391)
T ss_dssp EEETTTTEEEEEEECCSSEEEE-EECTTSSEEEEEETTTTE--EEEEET
T ss_pred EEECCCCeEEEEEecCCCccEE-EEccCCCEEEEEcCCCCE--EEEEEC
Confidence 9998877654333333334444 499999998888766542 455443
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=180.77 Aligned_cols=215 Identities=14% Similarity=0.137 Sum_probs=147.7
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
.+.+.+|.++++..+.+.+ .|+||++||.+.+.. .|...+..|++ +|.|+++|+||+|.|....
T Consensus 8 ~~~~~~g~~l~y~~~G~~~-------~p~lvl~hG~~~~~~-------~w~~~~~~L~~-~~~vi~~D~rG~G~S~~~~- 71 (266)
T 3om8_A 8 FLATSDGASLAYRLDGAAE-------KPLLALSNSIGTTLH-------MWDAQLPALTR-HFRVLRYDARGHGASSVPP- 71 (266)
T ss_dssp EEECTTSCEEEEEEESCTT-------SCEEEEECCTTCCGG-------GGGGGHHHHHT-TCEEEEECCTTSTTSCCCC-
T ss_pred EEeccCCcEEEEEecCCCC-------CCEEEEeCCCccCHH-------HHHHHHHHhhc-CcEEEEEcCCCCCCCCCCC-
Confidence 4566799999998886532 378999999766543 24445677776 7999999999999886421
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc--------
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-------- 679 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-------- 679 (776)
..+.++++.+.+..+++.- ..+++.++||||||.+++.+|.++|++++++|+.++........
T Consensus 72 -------~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~ 142 (266)
T 3om8_A 72 -------GPYTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAA 142 (266)
T ss_dssp -------SCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHH
Confidence 1233555555555555543 34589999999999999999999999999999987643211000
Q ss_pred ----c------------cccccccCCCCC------------Cccc-------hhcCChhhhhccCCCcEEEEecCCCCcc
Q 004067 680 ----T------------FYTEKYMGLPSE------------DPVG-------YEYSSVMHHVHKMKGKLLLVHGMIDENV 724 (776)
Q Consensus 680 ----~------------~~~~~~~~~~~~------------~~~~-------~~~~~~~~~~~~i~~P~lii~G~~D~~v 724 (776)
. ++...+...... .... +...+....+.++++|+|+++|++|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~G~~D~~~ 222 (266)
T 3om8_A 143 VLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVT 222 (266)
T ss_dssp HHHCSSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEEETTCSSS
T ss_pred HHccccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEEeCCCCCC
Confidence 0 000000000000 0000 0111223456788999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 725 HFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 725 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
++..+..+.+.+ .+.++++++ +||.. ..+.++++.+.+.+||.
T Consensus 223 ~~~~~~~l~~~i----p~a~~~~i~-~gH~~-~~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 223 AASHGELIAASI----AGARLVTLP-AVHLS-NVEFPQAFEGAVLSFLG 265 (266)
T ss_dssp CHHHHHHHHHHS----TTCEEEEES-CCSCH-HHHCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhC----CCCEEEEeC-CCCCc-cccCHHHHHHHHHHHhc
Confidence 999888887765 567888998 79976 67888999999999985
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.8e-20 Score=194.69 Aligned_cols=229 Identities=11% Similarity=-0.019 Sum_probs=159.0
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+.+.++. +|..+.++++.|... ++.|+||++||..+... . .+..++..++++||.|+++|+||+|.
T Consensus 166 ~~~~~v~i~~-~g~~l~~~~~~P~~~----~~~P~vv~~hG~~~~~~---~---~~~~~~~~l~~~G~~V~~~D~~G~G~ 234 (415)
T 3mve_A 166 YIIKQLEIPF-EKGKITAHLHLTNTD----KPHPVVIVSAGLDSLQT---D---MWRLFRDHLAKHDIAMLTVDMPSVGY 234 (415)
T ss_dssp SEEEEEEEEC-SSSEEEEEEEESCSS----SCEEEEEEECCTTSCGG---G---GHHHHHHTTGGGTCEEEEECCTTSGG
T ss_pred CCeEEEEEEE-CCEEEEEEEEecCCC----CCCCEEEEECCCCccHH---H---HHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 3567888887 788899999999763 57899999999766532 1 12234567888999999999999987
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
+..... ..........+++++.....+|.++|+|+||||||++++.++..+|++++++|+.+|..+.......
T Consensus 235 s~~~~~-------~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~ 307 (415)
T 3mve_A 235 SSKYPL-------TEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQ 307 (415)
T ss_dssp GTTSCC-------CSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHH
T ss_pred CCCCCC-------CCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHH
Confidence 753211 0011223456777887777788899999999999999999999999999999999988542111000
Q ss_pred --------c---cccccCCCCCCcc----chhcCChhhh----hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCC
Q 004067 682 --------Y---TEKYMGLPSEDPV----GYEYSSVMHH----VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 742 (776)
Q Consensus 682 --------~---~~~~~~~~~~~~~----~~~~~~~~~~----~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 742 (776)
+ ....++....... .+...++... +.++++|+|+++|++|.++|+..+..+.+ ...+
T Consensus 308 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~----~~~~ 383 (415)
T 3mve_A 308 KLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAF----FSTY 383 (415)
T ss_dssp HHTTSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHH----TBTT
T ss_pred HHHHhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHH----hCCC
Confidence 0 0001111111111 1111122111 35788999999999999999988877666 4578
Q ss_pred eEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 743 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 743 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
.+++++++..+ .....++...+.+||+++|
T Consensus 384 ~~l~~i~g~~~----h~~~~~~~~~i~~fL~~~L 413 (415)
T 3mve_A 384 GKAKKISSKTI----TQGYEQSLDLAIKWLEDEL 413 (415)
T ss_dssp CEEEEECCCSH----HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCc----ccchHHHHHHHHHHHHHHh
Confidence 89999998222 1256788899999999874
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-19 Score=176.14 Aligned_cols=213 Identities=18% Similarity=0.156 Sum_probs=139.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|..+++..+.+ ..|+||++||.+++.. . .|...+..|+++||.|+++|+||+|.|.....
T Consensus 10 ~g~~l~~~~~g~--------~~~~vvllHG~~~~~~--~----~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~----- 70 (254)
T 2ocg_A 10 NGVQLHYQQTGE--------GDHAVLLLPGMLGSGE--T----DFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDR----- 70 (254)
T ss_dssp TTEEEEEEEEEC--------CSEEEEEECCTTCCHH--H----HCHHHHHHSCTTTEEEEEECCTTSTTCCSSCC-----
T ss_pred CCEEEEEEEecC--------CCCeEEEECCCCCCCc--c----chHHHHHHHhhCCCeEEEECCCCCCCCCCCCC-----
Confidence 777788776642 1267999999765511 1 23445778888899999999999998864211
Q ss_pred ccCCccH-HHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc----------cc
Q 004067 613 NCGRIDA-EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------TF 681 (776)
Q Consensus 613 ~~~~~~~-~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~----------~~ 681 (776)
.+..... .++..+++++.+. +.+++.++||||||.+|+.+|.++|++++++|+.++........ ..
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 147 (254)
T 2ocg_A 71 DFPADFFERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSK 147 (254)
T ss_dssp CCCTTHHHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGG
T ss_pred CCChHHHHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHH
Confidence 1110002 2333444444443 34689999999999999999999999999999987753211000 00
Q ss_pred ccccc-------cCCC-----CC----C-ccch---hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 682 YTEKY-------MGLP-----SE----D-PVGY---EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 682 ~~~~~-------~~~~-----~~----~-~~~~---~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
+.... .+.. +. . ...+ ........+.++++|+|+++|++|..+|+..+..+.+.+ .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~----~ 223 (254)
T 2ocg_A 148 WSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV----K 223 (254)
T ss_dssp SCHHHHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHS----T
T ss_pred HHHHhHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCCHHHHHHHHHhC----C
Confidence 00000 0000 00 0 0000 001123456788999999999999999998887777665 4
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
+.++++++++||.+ ..+.++++.+.+.+||
T Consensus 224 ~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 224 GSRLHLMPEGKHNL-HLRFADEFNKLAEDFL 253 (254)
T ss_dssp TCEEEEETTCCTTH-HHHTHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCch-hhhCHHHHHHHHHHHh
Confidence 56899999999987 4467888999999997
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=175.92 Aligned_cols=215 Identities=16% Similarity=0.168 Sum_probs=142.7
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+++.+|..+++..+. +.|+||++||.+++.. .|...+..|++.||.|+++|+||+|.|....
T Consensus 3 ~~~~~g~~l~y~~~g---------~g~~vvllHG~~~~~~-------~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-- 64 (274)
T 1a8q_A 3 CTTRDGVEIFYKDWG---------QGRPVVFIHGWPLNGD-------AWQDQLKAVVDAGYRGIAHDRRGHGHSTPVW-- 64 (274)
T ss_dssp EECTTSCEEEEEEEC---------SSSEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCS--
T ss_pred EEccCCCEEEEEecC---------CCceEEEECCCcchHH-------HHHHHHHHHHhCCCeEEEEcCCCCCCCCCCC--
Confidence 566788888877663 1257999999776543 3455678889999999999999999886421
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCccc--------cc
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG--------YD 679 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~~--------~~ 679 (776)
....++++.+.+..+++.- +.+++.++||||||.+++.+++++ |++++++|+.++...... ..
T Consensus 65 ------~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 136 (274)
T 1a8q_A 65 ------DGYDFDTFADDLNDLLTDL--DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVP 136 (274)
T ss_dssp ------SCCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred ------CCCcHHHHHHHHHHHHHHc--CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccch
Confidence 1123455555554444432 346899999999999999877776 899999998876432100 00
Q ss_pred -ccc------------------cccccCCC--C--CCcc----------------------chhcCChhhhhccCCCcEE
Q 004067 680 -TFY------------------TEKYMGLP--S--EDPV----------------------GYEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 680 -~~~------------------~~~~~~~~--~--~~~~----------------------~~~~~~~~~~~~~i~~P~l 714 (776)
..+ ...+.... . .... .+...+....+.++++|+|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 216 (274)
T 1a8q_A 137 DEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTL 216 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEE
T ss_pred HHHHHHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCCEE
Confidence 000 00011100 0 0000 0011122345678899999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCC--cHHHHHHHHHHHHH
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR--DRIYMEERIWEFIE 773 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~--~~~~~~~~~~~fl~ 773 (776)
+++|++|..+|+....+....+ ..+.++++++++||.+. .+ .++++.+.+.+||.
T Consensus 217 ii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~~-~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 217 VVHGDDDQVVPIDATGRKSAQI---IPNAELKVYEGSSHGIA-MVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTTT-TSTTHHHHHHHHHHHHHT
T ss_pred EEecCcCCCCCcHHHHHHHHhh---CCCceEEEECCCCCcee-cccCCHHHHHHHHHHHhc
Confidence 9999999999987554444333 35679999999999874 45 78899999999985
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-18 Score=169.00 Aligned_cols=183 Identities=14% Similarity=0.027 Sum_probs=134.8
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHh--CCcEEEEECCCC-------------------CCCCchhhhhhh
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRG-------------------TARRGLKFEASI 610 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~d~rg-------------------~g~~~~~~~~~~ 610 (776)
++.|+||++||.+++.. .+..++..|++ .||.|+++|+|| +|.+........
T Consensus 22 ~~~~~vv~lHG~~~~~~-------~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~ 94 (226)
T 3cn9_A 22 NADACIIWLHGLGADRT-------DFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQL 94 (226)
T ss_dssp TCCEEEEEECCTTCCGG-------GGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTTCBCHHHH
T ss_pred CCCCEEEEEecCCCChH-------HHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccccccchhH
Confidence 57799999999876543 24456778887 999999988774 332211110000
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHh-hCCCceEEEEEcCCCCCcccccccccccccCC
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA-RFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 689 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (776)
. ...+++...++.+.+ ..++.++++|+||||||.+++.++. ++|++++++++.+|....... +
T Consensus 95 -~----~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~-------~--- 158 (226)
T 3cn9_A 95 -N----ASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDD-------L--- 158 (226)
T ss_dssp -H----HHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGG-------C---
T ss_pred -H----HHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchh-------h---
Confidence 0 013445555555544 3467789999999999999999999 999999999999987543210 0
Q ss_pred CCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHH
Q 004067 690 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIW 769 (776)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 769 (776)
.. ...+++.|+|+++|+.|..++++.+.++++.+.+.+.++++++++ ++|.+. .+..+.+.
T Consensus 159 ---------~~----~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~~i~ 219 (226)
T 3cn9_A 159 ---------AL----DERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEVS-----LEEIHDIG 219 (226)
T ss_dssp ---------CC----CTGGGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEES-CCSSCC-----HHHHHHHH
T ss_pred ---------hh----cccccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEec-CCCCcc-----hhhHHHHH
Confidence 00 124567899999999999999999999999999888899999999 999872 23467899
Q ss_pred HHHHHhC
Q 004067 770 EFIERTL 776 (776)
Q Consensus 770 ~fl~~~l 776 (776)
+||+++|
T Consensus 220 ~~l~~~l 226 (226)
T 3cn9_A 220 AWLRKRL 226 (226)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 9999876
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-16 Score=173.54 Aligned_cols=333 Identities=8% Similarity=-0.003 Sum_probs=212.4
Q ss_pred Ccee---EcCCCCEEEEEeCCCCc-----------CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHh
Q 004067 58 TSIG---FSPDDNLITYLLSPDHS-----------LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRER 123 (776)
Q Consensus 58 ~~~~---~SpDG~~ia~~~~~~~~-----------~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~ 123 (776)
...+ |+|+++.++..+..... ....||.+|.+++..+.+...+.
T Consensus 64 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~---------------------- 121 (433)
T 3bws_A 64 VEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKT---------------------- 121 (433)
T ss_dssp EEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEEC----------------------
T ss_pred EEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcC----------------------
Confidence 4455 99999988776543211 11278888887774443332111
Q ss_pred cCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCC-----CCCCCccCceeCCCCCEEEEEEC-CcEEEEe
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSS-----SSCSPVIDPHLSSDGTMIAFVRD-CELHVLN 196 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~-----~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~ 196 (776)
+..+..+.|+| +++.++.. .++.|++||+.+++.. .... .....+..+.|+|||+.++.... +.|++|+
T Consensus 122 ~~~~~~~~~s~---~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 122 GFQPKSVRFID---NTRLAIPLLEDEGMDVLDINSGQTV-RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFD 197 (433)
T ss_dssp SSCBCCCEESS---SSEEEEEBTTSSSEEEEETTTCCEE-EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred CCCceEEEEeC---CCeEEEEeCCCCeEEEEECCCCeEe-eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence 12455788999 88766655 3557999999998876 3221 12223667899999986655543 6799999
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+++++.......... .+..++|+|||+.|++.....
T Consensus 198 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~--------------------------- 233 (433)
T 3bws_A 198 LKTLAYKATVDLTGK-----------------WSKILLYDPIRDLVYCSNWIS--------------------------- 233 (433)
T ss_dssp TTTCCEEEEEECSSS-----------------SEEEEEEETTTTEEEEEETTT---------------------------
T ss_pred CCCceEEEEEcCCCC-----------------CeeEEEEcCCCCEEEEEecCC---------------------------
Confidence 998876543332111 134788999999887655221
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC----ceEEEEEEECCCCceE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ----TKLKVLKFDIKTGQRK 352 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~~l~~~d~~~g~~~ 352 (776)
..|++||+.+++.... ......+..++|+|||+.++....... .+..|++||+.+++..
T Consensus 234 --------~~i~~~d~~~~~~~~~---------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 234 --------EDISVIDRKTKLEIRK---------TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp --------TEEEEEETTTTEEEEE---------CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred --------CcEEEEECCCCcEEEE---------ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 3589999998876544 233445888999999997777654332 3678999999998766
Q ss_pred EEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 353 VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.......... ...|+| +++.++++...++ .|++|++++++..........+..+ .|+++|+.+++..
T Consensus 297 ~~~~~~~~~~---~~~~~~-------~g~~l~~~~~~~~--~v~v~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~ 363 (433)
T 3bws_A 297 DTIGPPGNKR---HIVSGN-------TENKIYVSDMCCS--KIEVYDLKEKKVQKSIPVFDKPNTI-ALSPDGKYLYVSC 363 (433)
T ss_dssp EEEEEEECEE---EEEECS-------STTEEEEEETTTT--EEEEEETTTTEEEEEEECSSSEEEE-EECTTSSEEEEEE
T ss_pred eeccCCCCcc---eEEECC-------CCCEEEEEecCCC--EEEEEECCCCcEEEEecCCCCCCeE-EEcCCCCEEEEEe
Confidence 5544332211 112222 2234555556666 8999999877654443333444554 4999999888887
Q ss_pred ccCCCc----------eeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 433 TLDGPL----------ESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 433 ~~~~~~----------~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
...+.. ...|+.+++. .+. ....+.....+..+.|+|||+.|+...+.. ..|.+++..
T Consensus 364 ~~~~~~~~~~~~~g~~dg~v~~~d~~-~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d---~~i~v~~~~ 431 (433)
T 3bws_A 364 RGPNHPTEGYLKKGLVLGKVYVIDTT-TDT----VKEFWEAGNQPTGLDVSPDNRYLVISDFLD---HQIRVYRRD 431 (433)
T ss_dssp CCCCCTTTCTTSCCSSCCEEEEEETT-TTE----EEEEEECSSSEEEEEECTTSCEEEEEETTT---TEEEEEEET
T ss_pred cCCCccccccccccccceEEEEEECC-CCc----EEEEecCCCCCceEEEcCCCCEEEEEECCC---CeEEEEEec
Confidence 653211 1256777763 232 344555555677889999999988765433 368888763
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-17 Score=186.41 Aligned_cols=373 Identities=9% Similarity=0.061 Sum_probs=215.2
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+..+.... ....|++||.. .....+..| ...+....|+|
T Consensus 106 v~~v~fs~dg~~l~~~~~~~~-~~~~v~~wd~~-~~~~~l~gh------------------------~~~v~~v~f~p-- 157 (611)
T 1nr0_A 106 VKDISWDSESKRIAAVGEGRE-RFGHVFLFDTG-TSNGNLTGQ------------------------ARAMNSVDFKP-- 157 (611)
T ss_dssp EEEEEECTTSCEEEEEECCSS-CSEEEEETTTC-CBCBCCCCC------------------------SSCEEEEEECS--
T ss_pred eEEEEECCCCCEEEEEECCCC-ceeEEEEeeCC-CCcceecCC------------------------CCCceEEEECC--
Confidence 578999999999997765331 12478888842 222233322 24688999999
Q ss_pred CCceE-EEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCc
Q 004067 137 SKKKI-IMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~-l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
|++. |+.. .++.|.+||..+++....+..+.. .+..++|||||+.||..+. +.|.+|++.+|+..........
T Consensus 158 -~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~-- 233 (611)
T 1nr0_A 158 -SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL-- 233 (611)
T ss_dssp -SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS--
T ss_pred -CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC-ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc--
Confidence 9974 5544 788999999988776534544443 4888999999999988775 5799999998876543211100
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEe-------ecCCCCCCCCCcceecCCCCCCCC----
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIM-------HQGKSSVGSEAQEDHAYPFAGASN---- 282 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~---- 282 (776)
...+.. +.+..++|+|||+.|+..+.|. ....|.+. ....... ......+.+ .+...
T Consensus 234 ~~~~h~--------~~V~~v~~spdg~~l~s~s~D~-~v~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~l~s~s 301 (611)
T 1nr0_A 234 KNVAHS--------GSVFGLTWSPDGTKIASASADK-TIKIWNVATLKVEKTIPVGTRI-EDQQLGIIW--TKQALVSIS 301 (611)
T ss_dssp SSCSSS--------SCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECCSSG-GGCEEEEEE--CSSCEEEEE
T ss_pred cccccC--------CCEEEEEECCCCCEEEEEeCCC-eEEEEeCCCCceeeeecCCCCc-cceeEEEEE--cCCEEEEEe
Confidence 000111 1255889999999998776443 22222210 0000000 000000000 11100
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe--c--
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE--E-- 358 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-- 358 (776)
....+.+|+..+++..... .++...+..++|||||+.|+..+ .+..|.+||+.++....+... .
T Consensus 302 ~d~~i~~~~~~~~~~~~~~--------~gh~~~v~~l~~spdg~~l~s~s----~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVR--------YGHNKAITALSSSADGKTLFSAD----AEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp TTCCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred CCCcEEEEeCCCCCcceEE--------cCCCCCEEEEEEeCCCCEEEEEe----CCCcEEEEECCCCceeeecccCCcce
Confidence 1123678888877644331 45677899999999999888766 344688999887765332100 0
Q ss_pred --------cC------------ceeecc-------------------cccccCC--------------------------
Q 004067 359 --------LD------------SWVNLH-------------------DCFTPLD-------------------------- 373 (776)
Q Consensus 359 --------~~------------~~~~~~-------------------~~~~~~~-------------------------- 373 (776)
+. .|.... -.|++.+
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~ 449 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 449 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence 00 010000 0011111
Q ss_pred --CCccccC-CeEEEEeccCCceEEEEEeCCCceeecc--ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 374 --KGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 374 --~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~l--t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
..+++++ +.++++...++ .|++|+++++....+ ..+...+..+. |||||++|+..+. ++. +.+|.+..
T Consensus 450 ~v~~va~spdg~~lasgs~D~--~v~lwd~~~~~~~~~~~~~h~~~v~~v~-fspdg~~las~s~-d~~--v~~w~~~~- 522 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDS--KVHVYKLSGASVSEVKTIVHPAEITSVA-FSNNGAFLVATDQ-SRK--VIPYSVAN- 522 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTS--EEEEEEEETTEEEEEEEEECSSCEEEEE-ECTTSSEEEEEET-TSC--EEEEEGGG-
T ss_pred CceEEEEeCCCCEEEEeCCCC--eEEEEEccCCceeeeeccCCCCceEEEE-ECCCCCEEEEEcC-CCC--EEEEEcCC-
Confidence 0012222 33555555566 888999877654322 33444566654 9999997655544 332 67776642
Q ss_pred CCCCCccccce--eec-CCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCc
Q 004067 449 PDWNHTLEAPV--KLT-NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 501 (776)
Q Consensus 449 ~~g~~~~~~~~--~l~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~ 501 (776)
.+. ... .+. ....+..++|||||++|+..... ..|.+|+..++.
T Consensus 523 -~~~----~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D----~~v~lW~~~~~~ 569 (611)
T 1nr0_A 523 -NFE----LAHTNSWTFHTAKVACVSWSPDNVRLATGSLD----NSVIVWNMNKPS 569 (611)
T ss_dssp -TTE----ESCCCCCCCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTCTT
T ss_pred -CCc----eeeeeeeeecccceeEEEECCCCCEEEEEECC----CcEEEEECCCcc
Confidence 122 111 122 22357889999999998876433 249999987765
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=179.34 Aligned_cols=219 Identities=12% Similarity=0.082 Sum_probs=147.0
Q ss_pred EEEEE---cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC---
Q 004067 526 IVQIQ---ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT--- 599 (776)
Q Consensus 526 ~~~~~---~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~--- 599 (776)
.+++. ..++..+.+++|.|+... .+.|+||++||+++... .| +..++..++++||.|+++|+|+.
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~~P~~~~---~~~p~vv~lHG~~~~~~---~~---~~~~~~~l~~~g~~v~~~d~~~~~~p 96 (304)
T 3d0k_A 26 AIPYLDDDRNADRPFTLNTYRPYGYT---PDRPVVVVQHGVLRNGA---DY---RDFWIPAADRHKLLIVAPTFSDEIWP 96 (304)
T ss_dssp EEEECC---CTTCCEEEEEEECTTCC---TTSCEEEEECCTTCCHH---HH---HHHTHHHHHHHTCEEEEEECCTTTSC
T ss_pred eEEecccCCCCCceEEEEEEeCCCCC---CCCcEEEEeCCCCCCHH---HH---HHHHHHHHHHCCcEEEEeCCccccCC
Confidence 35565 567888999999997632 46799999999876643 12 13347788889999999999944
Q ss_pred -----------CCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-ceEEEE
Q 004067 600 -----------ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAV 667 (776)
Q Consensus 600 -----------g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~~v 667 (776)
|.++.. .......+.|+.++++++.++..++.++|+|+||||||++++.++.++|+ .++++|
T Consensus 97 ~~~~~~~g~~~g~s~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~v 170 (304)
T 3d0k_A 97 GVESYNNGRAFTAAGNP------RHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVT 170 (304)
T ss_dssp HHHHTTTTTCBCTTSCB------CCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEE
T ss_pred CccccccCccccccCCC------CcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEE
Confidence 222211 00112235789999999998877788999999999999999999999985 677777
Q ss_pred EcC-CCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccC-----------------hHHH
Q 004067 668 SGA-PVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVH-----------------FRHT 729 (776)
Q Consensus 668 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~-----------------~~~~ 729 (776)
+.. |..++..... ....+... ...++......++.|+|++||+.|..+. ...+
T Consensus 171 l~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (304)
T 3d0k_A 171 AANPGWYTLPTFEH---RFPEGLDG------VGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARA 241 (304)
T ss_dssp EESCSSCCCSSTTS---BTTTSSBT------TTCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHH
T ss_pred EecCcccccCCccc---cCccccCC------CCCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccHHHHH
Confidence 544 5544322110 00011100 0123434444556899999999998742 2345
Q ss_pred HHHHHHHH----HCCCC--eEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 730 ARLINALV----AARKP--YEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 730 ~~~~~~l~----~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
..+++.++ +.+.+ ++++++|+++|.+ ......+.+||.+
T Consensus 242 ~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~------~~~~~~~~~~~~~ 286 (304)
T 3d0k_A 242 RHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDG------QAMSQVCASLWFD 286 (304)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEEETTCCSCH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEeCCCCCch------HHHHHHHHHHHhh
Confidence 56666665 56666 9999999999976 2345666676653
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=180.82 Aligned_cols=204 Identities=15% Similarity=0.107 Sum_probs=142.2
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHH----HhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL----RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 627 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l----~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~ 627 (776)
++.|+||++||++...... -...|..++..| ++.||.|+++|+|+++.... ...++|+.++++
T Consensus 39 ~~~p~vv~lHGgg~~~g~~--~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~~-----------~~~~~d~~~~~~ 105 (273)
T 1vkh_A 39 NTREAVIYIHGGAWNDPEN--TPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITN-----------PRNLYDAVSNIT 105 (273)
T ss_dssp TCCEEEEEECCSTTTCTTC--CGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCT-----------THHHHHHHHHHH
T ss_pred CCCeEEEEECCCcccCCcC--ChHHHHHHHHHHhhhhccCCcEEEEeecccCCCCCC-----------CcHHHHHHHHHH
Confidence 4679999999976432100 011344456777 68899999999997754321 123678999999
Q ss_pred HHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-----------------CCceEEEEEcCCCCCccccccc------ccc
Q 004067 628 WLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-----------------PDVFQCAVSGAPVTSWDGYDTF------YTE 684 (776)
Q Consensus 628 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-----------------~~~~~~~v~~~~~~~~~~~~~~------~~~ 684 (776)
++.++ ++.++++|+||||||.+++.++.++ ++.++++++.+|..++...... +..
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 183 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 183 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHHHHHH
Confidence 99887 3667999999999999999999885 7789999999998765322110 011
Q ss_pred cccCCCCC-CccchhcCChh--hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH
Q 004067 685 KYMGLPSE-DPVGYEYSSVM--HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 761 (776)
Q Consensus 685 ~~~~~~~~-~~~~~~~~~~~--~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 761 (776)
..++.... ........++. .....+++|+|+++|++|.++|+..+..+++.+.+.+.+++++++++++|.+.. +.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~~~-~~- 261 (273)
T 1vkh_A 184 LAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVY-KN- 261 (273)
T ss_dssp HHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGGGG-GC-
T ss_pred HHhcccccchhhcccccChhhhhcccccCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeCCCcccccc-cC-
Confidence 11111100 00001111111 122337789999999999999999999999999999999999999999998733 33
Q ss_pred HHHHHHHHHHH
Q 004067 762 IYMEERIWEFI 772 (776)
Q Consensus 762 ~~~~~~~~~fl 772 (776)
.++.+.+.+||
T Consensus 262 ~~~~~~i~~fl 272 (273)
T 1vkh_A 262 GKVAKYIFDNI 272 (273)
T ss_dssp HHHHHHHHHTC
T ss_pred hHHHHHHHHHc
Confidence 77788887775
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=177.22 Aligned_cols=203 Identities=19% Similarity=0.237 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+||++||.+++.. .|..++..|+++||.|+++|+||+|.+........... ..+|+.++++++.+..
T Consensus 17 ~~vvllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~GhG~s~~~~~~~~~~~----~~~d~~~~~~~l~~~~- 84 (247)
T 1tqh_A 17 RAVLLLHGFTGNSA-------DVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDD----WWQDVMNGYEFLKNKG- 84 (247)
T ss_dssp CEEEEECCTTCCTH-------HHHHHHHHHHHTTCEEEECCCTTSSSCHHHHTTCCHHH----HHHHHHHHHHHHHHHT-
T ss_pred cEEEEECCCCCChH-------HHHHHHHHHHHCCCEEEecccCCCCCCHHHhcCCCHHH----HHHHHHHHHHHHHHcC-
Confidence 67899999766543 34456788888999999999999996642211000011 1345566666665543
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEc-CCCCCcc--cc-------ccccc--------------ccccCCC
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG-APVTSWD--GY-------DTFYT--------------EKYMGLP 690 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~-~~~~~~~--~~-------~~~~~--------------~~~~~~~ 690 (776)
.+++.|+||||||.+++.+|.++| ++++|+. +|..... .. ...+. ..+...+
T Consensus 85 --~~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (247)
T 1tqh_A 85 --YEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTP 160 (247)
T ss_dssp --CCCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSC
T ss_pred --CCeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCCC
Confidence 358999999999999999999998 6777654 4433110 00 00000 0000000
Q ss_pred CCCccchhc--CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHH
Q 004067 691 SEDPVGYEY--SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 768 (776)
Q Consensus 691 ~~~~~~~~~--~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 768 (776)
......+.. .+....+.++++|+|+++|++|..+|+..+..+++.+. +...++++++++||.+.....++++.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~e~~~~~~~~~i 238 (247)
T 1tqh_A 161 MKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIE--SPVKQIKWYEQSGHVITLDQEKDQLHEDI 238 (247)
T ss_dssp CTTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCC--CSSEEEEEETTCCSSGGGSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCEEEEecCCCCCCCcchHHHHHHhcC--CCceEEEEeCCCceeeccCccHHHHHHHH
Confidence 000000000 12234567889999999999999999998888887762 23479999999999874444578999999
Q ss_pred HHHHHHh
Q 004067 769 WEFIERT 775 (776)
Q Consensus 769 ~~fl~~~ 775 (776)
.+||++.
T Consensus 239 ~~Fl~~~ 245 (247)
T 1tqh_A 239 YAFLESL 245 (247)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9999863
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=177.18 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=141.0
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhh
Q 004067 530 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 609 (776)
Q Consensus 530 ~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~ 609 (776)
...+|..+++..... .|.||++||.+++.. .|...+..|+++||.|+++|+||+|.|.....
T Consensus 12 ~~~~g~~l~y~~~G~---------g~~vvllHG~~~~~~-------~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-- 73 (281)
T 3fob_A 12 ENQAPIEIYYEDHGT---------GKPVVLIHGWPLSGR-------SWEYQVPALVEAGYRVITYDRRGFGKSSQPWE-- 73 (281)
T ss_dssp ETTEEEEEEEEEESS---------SEEEEEECCTTCCGG-------GGTTTHHHHHHTTEEEEEECCTTSTTSCCCSS--
T ss_pred CCCCceEEEEEECCC---------CCeEEEECCCCCcHH-------HHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcc--
Confidence 345677787776531 256889999877643 23445778889999999999999998864321
Q ss_pred hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCCCCccc---------cc
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDG---------YD 679 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~~~~~~---------~~ 679 (776)
.+.++++.+.+..+++.- ..+++.|+||||||.+++.+++. +|++++++++.++...... ..
T Consensus 74 ------~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 145 (281)
T 3fob_A 74 ------GYEYDTFTSDLHQLLEQL--ELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALD 145 (281)
T ss_dssp ------CCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBC
T ss_pred ------ccCHHHHHHHHHHHHHHc--CCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccc
Confidence 233555555555555543 34689999999999887776665 5899999998775432100 00
Q ss_pred -c------------------cccccccCCC---CCCcc-----------------------chhcCChhhhhccCCCcEE
Q 004067 680 -T------------------FYTEKYMGLP---SEDPV-----------------------GYEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 680 -~------------------~~~~~~~~~~---~~~~~-----------------------~~~~~~~~~~~~~i~~P~l 714 (776)
. .+...+.... ....+ .+...+....+.++++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~L 225 (281)
T 3fob_A 146 DATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTL 225 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEE
T ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCCEE
Confidence 0 0000011100 00000 0011223345688899999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++|++|.++|++.+.+..... -.+.++++++++||.+ ..+.++++.+.+.+||+
T Consensus 226 ii~G~~D~~~p~~~~~~~~~~~---~p~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 226 IIHGDSDATVPFEYSGKLTHEA---IPNSKVALIKGGPHGL-NATHAKEFNEALLLFLK 280 (281)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTH-HHHTHHHHHHHHHHHHC
T ss_pred EEecCCCCCcCHHHHHHHHHHh---CCCceEEEeCCCCCch-hhhhHHHHHHHHHHHhh
Confidence 9999999999988664443332 3567999999999986 66788999999999985
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.6e-19 Score=178.61 Aligned_cols=220 Identities=17% Similarity=0.163 Sum_probs=146.8
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch-
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL- 604 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~- 604 (776)
+..+...+|.++++..+.|++ .|+||++||.+++... .|..++..| ..+|.|+++|+||+|.|..
T Consensus 4 ~~~~~~~~g~~l~~~~~G~~~-------~~~vvllHG~~~~~~~------~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~ 69 (286)
T 2yys_A 4 EIGYVPVGEAELYVEDVGPVE-------GPALFVLHGGPGGNAY------VLREGLQDY-LEGFRVVYFDQRGSGRSLEL 69 (286)
T ss_dssp EEEEEECSSCEEEEEEESCTT-------SCEEEEECCTTTCCSH------HHHHHHGGG-CTTSEEEEECCTTSTTSCCC
T ss_pred ceeEEeECCEEEEEEeecCCC-------CCEEEEECCCCCcchh------HHHHHHHHh-cCCCEEEEECCCCCCCCCCC
Confidence 344455688889998887632 2689999998765320 234456666 4589999999999998864
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc----c--
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG----Y-- 678 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~----~-- 678 (776)
.... ..+.++++.+.+..+++.- ..+++.|+||||||.+|+.+|.++|+ ++++|+.++...+.. .
T Consensus 70 ~~~~------~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~ 140 (286)
T 2yys_A 70 PQDP------RLFTVDALVEDTLLLAEAL--GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAE 140 (286)
T ss_dssp CSCG------GGCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHH
T ss_pred ccCc------ccCcHHHHHHHHHHHHHHh--CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHH
Confidence 2110 0123555555555555543 34689999999999999999999999 999999988653211 0
Q ss_pred ----------ccccc------------cc--ccC---------------CCCCC--c-----cchhcCChhhhhccCCCc
Q 004067 679 ----------DTFYT------------EK--YMG---------------LPSED--P-----VGYEYSSVMHHVHKMKGK 712 (776)
Q Consensus 679 ----------~~~~~------------~~--~~~---------------~~~~~--~-----~~~~~~~~~~~~~~i~~P 712 (776)
...+. +. +.. ..... . ......+....+.++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 220 (286)
T 2yys_A 141 AAGLAPLPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRP 220 (286)
T ss_dssp HTTCCCCSCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSC
T ss_pred HhccccchhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCC
Confidence 00000 00 000 00000 0 000111223346778899
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+|+++|++|..+++. +..+.+ +. +.++++++++||.. ..+.++++.+.+.+||.+.
T Consensus 221 ~lvi~G~~D~~~~~~-~~~~~~-~~----~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 221 LYVLVGERDGTSYPY-AEEVAS-RL----RAPIRVLPEAGHYL-WIDAPEAFEEAFKEALAAL 276 (286)
T ss_dssp EEEEEETTCTTTTTT-HHHHHH-HH----TCCEEEETTCCSSH-HHHCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCcCCHh-HHHHHh-CC----CCCEEEeCCCCCCc-ChhhHHHHHHHHHHHHHhh
Confidence 999999999999988 888877 63 45789999999987 5567889999999999763
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=173.21 Aligned_cols=193 Identities=15% Similarity=0.048 Sum_probs=142.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchh--hhHHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM--RAQYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~--~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
+|.+++++.+.|... ++.|+||++||++++.. .|.. ++..|+++||.|+++|+||+|.+........
T Consensus 15 ~g~~l~~~~~~p~~~----~~~~~vv~~hG~~~~~~-------~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~ 83 (210)
T 1imj_A 15 QGQALFFREALPGSG----QARFSVLLLHGIRFSSE-------TWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAP 83 (210)
T ss_dssp TTEEECEEEEECSSS----CCSCEEEECCCTTCCHH-------HHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSCCSSC
T ss_pred CCeEEEEEEeCCCCC----CCCceEEEECCCCCccc-------eeecchhHHHHHHCCCeEEEecCCCCCCCCCCCCcch
Confidence 788999999998653 35689999999876644 2233 4778899999999999999987754321111
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCC
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 690 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 690 (776)
.... ....++...++.+ +.++++++|||+||.+++.++.++|+.++++++.+|.....
T Consensus 84 ~~~~--~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~-------------- 141 (210)
T 1imj_A 84 IGEL--APGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK-------------- 141 (210)
T ss_dssp TTSC--CCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG--------------
T ss_pred hhhc--chHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc--------------
Confidence 1111 0124555555554 34689999999999999999999999999999988864311
Q ss_pred CCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHH
Q 004067 691 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWE 770 (776)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 770 (776)
.....+.+++.|+++++|++|. +++.....+ +. -.+.+++++++++|.+ ..+....+.+.+.+
T Consensus 142 ----------~~~~~~~~~~~p~l~i~g~~D~-~~~~~~~~~-~~----~~~~~~~~~~~~~H~~-~~~~~~~~~~~i~~ 204 (210)
T 1imj_A 142 ----------INAANYASVKTPALIVYGDQDP-MGQTSFEHL-KQ----LPNHRVLIMKGAGHPC-YLDKPEEWHTGLLD 204 (210)
T ss_dssp ----------SCHHHHHTCCSCEEEEEETTCH-HHHHHHHHH-TT----SSSEEEEEETTCCTTH-HHHCHHHHHHHHHH
T ss_pred ----------ccchhhhhCCCCEEEEEcCccc-CCHHHHHHH-hh----CCCCCEEEecCCCcch-hhcCHHHHHHHHHH
Confidence 0124456788999999999999 887776665 43 3568999999999986 34557788999999
Q ss_pred HHHHh
Q 004067 771 FIERT 775 (776)
Q Consensus 771 fl~~~ 775 (776)
||++.
T Consensus 205 fl~~~ 209 (210)
T 1imj_A 205 FLQGL 209 (210)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 99763
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=176.95 Aligned_cols=213 Identities=14% Similarity=0.130 Sum_probs=142.4
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 531 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 531 ~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
..+|..+++..+. + . |.||++||.+++.. .|..++..|+++||.|+++|+||+|.|....
T Consensus 9 ~~~g~~l~y~~~g--~------g-~pvvllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~---- 68 (277)
T 1brt_A 9 NSTSIDLYYEDHG--T------G-QPVVLIHGFPLSGH-------SWERQSAALLDAGYRVITYDRRGFGQSSQPT---- 68 (277)
T ss_dssp TTEEEEEEEEEEC--S------S-SEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCS----
T ss_pred cCCCcEEEEEEcC--C------C-CeEEEECCCCCcHH-------HHHHHHHHHhhCCCEEEEeCCCCCCCCCCCC----
Confidence 3467778777653 1 1 34899999876543 3455678899999999999999999886432
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-ceEEEEEcCCCCCcccc---------c-
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDGY---------D- 679 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~~v~~~~~~~~~~~---------~- 679 (776)
..+.++++.+.+..+++.- +.+++.|+||||||.+++.+|.++|+ +++++|+.++....... .
T Consensus 69 ----~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 142 (277)
T 1brt_A 69 ----TGYDYDTFAADLNTVLETL--DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQ 142 (277)
T ss_dssp ----SCCSHHHHHHHHHHHHHHH--TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCH
T ss_pred ----CCccHHHHHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccH
Confidence 1123444444444444332 34689999999999999999999998 99999998874321100 0
Q ss_pred cc------------------ccccccCC----C-CCCccc---h----------------h--cCChhhhhccCCCcEEE
Q 004067 680 TF------------------YTEKYMGL----P-SEDPVG---Y----------------E--YSSVMHHVHKMKGKLLL 715 (776)
Q Consensus 680 ~~------------------~~~~~~~~----~-~~~~~~---~----------------~--~~~~~~~~~~i~~P~li 715 (776)
.. +...+... . ...... + . ..+....+.++++|+|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 222 (277)
T 1brt_A 143 EFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALI 222 (277)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEE
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCCeEE
Confidence 00 00000110 0 000000 0 0 11223356788899999
Q ss_pred EecCCCCccChHHH-HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 716 VHGMIDENVHFRHT-ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 716 i~G~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++|++|..+|+..+ ..+.+.+ .+.++++++++||.. ..+.++++.+.+.+||.+
T Consensus 223 i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 277 (277)
T 1brt_A 223 LHGTGDRTLPIENTARVFHKAL----PSAEYVEVEGAPHGL-LWTHAEEVNTALLAFLAK 277 (277)
T ss_dssp EEETTCSSSCGGGTHHHHHHHC----TTSEEEEETTCCTTH-HHHTHHHHHHHHHHHHHC
T ss_pred EecCCCccCChHHHHHHHHHHC----CCCcEEEeCCCCcch-hhhCHHHHHHHHHHHHhC
Confidence 99999999998877 6666654 467899999999987 456788999999999863
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=181.65 Aligned_cols=228 Identities=15% Similarity=0.205 Sum_probs=144.0
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCCCc
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRG 603 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~~~ 603 (776)
+...+.. +|.++++..+.++... .+.+.||++||++++.. .|. .....|++ .||.|+++|+||+|.|.
T Consensus 29 ~~~~v~~-~g~~l~y~~~G~~~~~---~~g~plvllHG~~~~~~---~w~----~~~~~l~~~~~~~Via~D~rG~G~S~ 97 (330)
T 3nwo_A 29 SSRTVPF-GDHETWVQVTTPENAQ---PHALPLIVLHGGPGMAH---NYV----ANIAALADETGRTVIHYDQVGCGNST 97 (330)
T ss_dssp CEEEEEE-TTEEEEEEEECCSSCC---TTCCCEEEECCTTTCCS---GGG----GGGGGHHHHHTCCEEEECCTTSTTSC
T ss_pred cceeEee-cCcEEEEEEecCccCC---CCCCcEEEECCCCCCch---hHH----HHHHHhccccCcEEEEECCCCCCCCC
Confidence 4445554 7888999999874321 11236888999877643 232 23445554 69999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc----
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---- 679 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~---- 679 (776)
....... ..+..+++.+.+..+++.- ..+++.|+||||||++++.+|.++|+++.++|+.++......+.
T Consensus 98 ~~~~~~~----~~~~~~~~a~dl~~ll~~l--g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~ 171 (330)
T 3nwo_A 98 HLPDAPA----DFWTPQLFVDEFHAVCTAL--GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAG 171 (330)
T ss_dssp CCTTSCG----GGCCHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHHHHHHH
T ss_pred CCCCCcc----ccccHHHHHHHHHHHHHHc--CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHHHHHHH
Confidence 4111000 0112333333333333332 34689999999999999999999999999999877654311000
Q ss_pred ---------------------c----c-------ccccccC--CCCC------------Cc---------------cchh
Q 004067 680 ---------------------T----F-------YTEKYMG--LPSE------------DP---------------VGYE 698 (776)
Q Consensus 680 ---------------------~----~-------~~~~~~~--~~~~------------~~---------------~~~~ 698 (776)
. . +...... .++. .. ....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
T 3nwo_A 172 DLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEFHVVGTLG 251 (330)
T ss_dssp HHHHHSCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHSCHHHHHHTCSCSSSCCSGGG
T ss_pred HHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccccCCCHHHHHHHHhhccchhhhhcccCchhhhhhcccc
Confidence 0 0 0000000 0000 00 0011
Q ss_pred cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 699 YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 699 ~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..+....+.++++|+|+++|++|.++| .....+.+.+ .+.+++++|++||.+ ..+.++++.+.+.+||+++
T Consensus 252 ~~~~~~~l~~i~~P~Lvi~G~~D~~~p-~~~~~~~~~i----p~~~~~~i~~~gH~~-~~e~p~~~~~~i~~FL~~~ 322 (330)
T 3nwo_A 252 DWSVIDRLPDVTAPVLVIAGEHDEATP-KTWQPFVDHI----PDVRSHVFPGTSHCT-HLEKPEEFRAVVAQFLHQH 322 (330)
T ss_dssp GCBCGGGGGGCCSCEEEEEETTCSSCH-HHHHHHHHHC----SSEEEEEETTCCTTH-HHHSHHHHHHHHHHHHHHH
T ss_pred CCchhhhcccCCCCeEEEeeCCCccCh-HHHHHHHHhC----CCCcEEEeCCCCCch-hhcCHHHHHHHHHHHHHhc
Confidence 112334567889999999999999875 4455555543 678999999999977 5678899999999999864
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=170.57 Aligned_cols=185 Identities=14% Similarity=0.099 Sum_probs=138.7
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEE--CCCCCCCCchhhh--hh--hhhccCCccHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL--DNRGTARRGLKFE--AS--IKHNCGRIDAEDQLTG 625 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~--d~rg~g~~~~~~~--~~--~~~~~~~~~~~D~~~~ 625 (776)
++.|+||++||.++... .+..++..|++ ||.|+++ |++|+|.+..... .. .... ...+..++.+.
T Consensus 36 ~~~~~vv~~HG~~~~~~-------~~~~~~~~l~~-g~~v~~~~~d~~g~g~s~~~~~~~~~~~~~~~-~~~~~~~~~~~ 106 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGNEL-------DLLPLAEIVDS-EASVLSVRGNVLENGMPRFFRRLAEGIFDEED-LIFRTKELNEF 106 (226)
T ss_dssp TTSCEEEEECCTTCCTT-------TTHHHHHHHHT-TSCEEEECCSEEETTEEESSCEEETTEECHHH-HHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCChh-------HHHHHHHHhcc-CceEEEecCcccCCcchhhccccCccCcChhh-HHHHHHHHHHH
Confidence 35699999999876543 23445677877 9999999 8888886531000 00 0000 01124556677
Q ss_pred HHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhh
Q 004067 626 AEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 705 (776)
Q Consensus 626 i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (776)
++.+.++..++..+++++||||||.+++.++..+|++++++++.+|...... ...
T Consensus 107 l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~-------------------------~~~ 161 (226)
T 2h1i_A 107 LDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG-------------------------MQL 161 (226)
T ss_dssp HHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS-------------------------CCC
T ss_pred HHHHHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc-------------------------ccc
Confidence 7777777767889999999999999999999999999999999998754311 001
Q ss_pred hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 706 ~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
...++.|+|+++|+.|..+++..+..+++.+.+.+.++++ ++++++|.+ ..+....+.+||.++|
T Consensus 162 ~~~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~-----~~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 162 ANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTM-HWENRGHQL-----TMGEVEKAKEWYDKAF 226 (226)
T ss_dssp CCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEESSTTSC-----CHHHHHHHHHHHHHHC
T ss_pred ccccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeCCCCCCC-----CHHHHHHHHHHHHHhC
Confidence 1234689999999999999999999999999888888888 999999987 2456789999999875
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=178.16 Aligned_cols=216 Identities=19% Similarity=0.198 Sum_probs=140.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|..+++..+.+. .+.|.||++||++++.. .| +.. ...+++.||.|+++|+||+|.|.... . .
T Consensus 13 ~g~~l~~~~~g~~------~~~~~vvllHG~~~~~~---~~---~~~-~~~l~~~g~~vi~~D~~G~G~S~~~~-~---~ 75 (293)
T 1mtz_A 13 NGIYIYYKLCKAP------EEKAKLMTMHGGPGMSH---DY---LLS-LRDMTKEGITVLFYDQFGCGRSEEPD-Q---S 75 (293)
T ss_dssp TTEEEEEEEECCS------SCSEEEEEECCTTTCCS---GG---GGG-GGGGGGGTEEEEEECCTTSTTSCCCC-G---G
T ss_pred CCEEEEEEEECCC------CCCCeEEEEeCCCCcch---hH---HHH-HHHHHhcCcEEEEecCCCCccCCCCC-C---C
Confidence 6788888877542 12367899999765432 12 122 23346789999999999999886432 1 0
Q ss_pred ccCCccHHHHHHHHHHHHHcC-CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-----------c
Q 004067 613 NCGRIDAEDQLTGAEWLIKQG-LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-----------T 680 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-----------~ 680 (776)
...++++.+.+..+++.- .+ +++.|+||||||.+++.+|.++|++++++|+.+|......+. .
T Consensus 76 ---~~~~~~~~~dl~~~~~~l~~~--~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
T 1mtz_A 76 ---KFTIDYGVEEAEALRSKLFGN--EKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPA 150 (293)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTT--CCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCH
T ss_pred ---cccHHHHHHHHHHHHHHhcCC--CcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHHHHHHHhcCH
Confidence 122444444444443332 22 489999999999999999999999999999998875421000 0
Q ss_pred ----c---------------------ccccccC--CCCCCc--c------------------------chhcCChhhhhc
Q 004067 681 ----F---------------------YTEKYMG--LPSEDP--V------------------------GYEYSSVMHHVH 707 (776)
Q Consensus 681 ----~---------------------~~~~~~~--~~~~~~--~------------------------~~~~~~~~~~~~ 707 (776)
. +...+.. .++... . .....+....+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (293)
T 1mtz_A 151 KYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKIS 230 (293)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGG
T ss_pred HHHHHHHHhhccCCcChHHHHHHHHHHHHhhcccccCchHHHHHhHhhhccchhhhhccCcceecccccccCCChhhhhc
Confidence 0 0000000 000000 0 000112233467
Q ss_pred cCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 708 KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 708 ~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++++|+|+++|++| .+++..+..+.+.+ .+.++++++++||.. ..+.++++.+.+.+||.++|
T Consensus 231 ~i~~P~lii~G~~D-~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl~~~l 293 (293)
T 1mtz_A 231 AIKIPTLITVGEYD-EVTPNVARVIHEKI----AGSELHVFRDCSHLT-MWEDREGYNKLLSDFILKHL 293 (293)
T ss_dssp GCCSCEEEEEETTC-SSCHHHHHHHHHHS----TTCEEEEETTCCSCH-HHHSHHHHHHHHHHHHHTCC
T ss_pred cCCCCEEEEeeCCC-CCCHHHHHHHHHhC----CCceEEEeCCCCCCc-cccCHHHHHHHHHHHHHhcC
Confidence 78899999999999 67777777776654 457999999999987 45678899999999998765
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=176.98 Aligned_cols=214 Identities=16% Similarity=0.143 Sum_probs=142.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchh-hhHHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~-~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
.+|.++++..+.+.+ .|.||++||.+++.. . |.. ++..|+++||.|+++|+||+|.|......
T Consensus 8 ~~g~~l~y~~~G~~~-------~~~vvllHG~~~~~~---~----w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~~~~-- 71 (298)
T 1q0r_A 8 SGDVELWSDDFGDPA-------DPALLLVMGGNLSAL---G----WPDEFARRLADGGLHVIRYDHRDTGRSTTRDFA-- 71 (298)
T ss_dssp ETTEEEEEEEESCTT-------SCEEEEECCTTCCGG---G----SCHHHHHHHHTTTCEEEEECCTTSTTSCCCCTT--
T ss_pred cCCeEEEEEeccCCC-------CCeEEEEcCCCCCcc---c----hHHHHHHHHHhCCCEEEeeCCCCCCCCCCCCCC--
Confidence 478889988876532 268999999876543 2 332 35788999999999999999998641000
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC-Cc--c-----------
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT-SW--D----------- 676 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~-~~--~----------- 676 (776)
...+.++++.+.+..+++.- +.+++.++||||||.+++.+|.++|++++++|+.++.. .. .
T Consensus 72 ---~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 146 (298)
T 1q0r_A 72 ---AHPYGFGELAADAVAVLDGW--GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEP 146 (298)
T ss_dssp ---TSCCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCC
T ss_pred ---cCCcCHHHHHHHHHHHHHHh--CCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCcccccchhhhhhhhh
Confidence 01234555555555555543 34689999999999999999999999999999877644 20 0
Q ss_pred ---ccc----c----ccc------------cc------cc-C--CCCC--------------------C-ccchh---cC
Q 004067 677 ---GYD----T----FYT------------EK------YM-G--LPSE--------------------D-PVGYE---YS 700 (776)
Q Consensus 677 ---~~~----~----~~~------------~~------~~-~--~~~~--------------------~-~~~~~---~~ 700 (776)
... . ... .. .. . .+.. . ...+. ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (298)
T 1q0r_A 147 TLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPP 226 (298)
T ss_dssp CSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCC
T ss_pred hhcccccccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchhhhhhhhhcCc
Confidence 000 0 000 00 00 0 0000 0 00000 11
Q ss_pred Chhhh-hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 701 SVMHH-VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 701 ~~~~~-~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+.... +.++++|+|+++|++|..+|+..+..+.+.+ .+.++++++++|| +..+++.+.+.+||.++
T Consensus 227 ~~~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~gH-----e~p~~~~~~i~~fl~~~ 293 (298)
T 1q0r_A 227 PSRAAELREVTVPTLVIQAEHDPIAPAPHGKHLAGLI----PTARLAEIPGMGH-----ALPSSVHGPLAEVILAH 293 (298)
T ss_dssp GGGGGGGGGCCSCEEEEEETTCSSSCTTHHHHHHHTS----TTEEEEEETTCCS-----SCCGGGHHHHHHHHHHH
T ss_pred ccccccccccCCCEEEEEeCCCccCCHHHHHHHHHhC----CCCEEEEcCCCCC-----CCcHHHHHHHHHHHHHH
Confidence 12234 7788999999999999999988887776654 5689999999999 23467788999999765
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=180.89 Aligned_cols=218 Identities=16% Similarity=0.115 Sum_probs=149.7
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+...++. +|..+++..+.+ .|+||++||.+++.. .|..++..|++ +|.|+++|+||+|.+.
T Consensus 48 ~~~~~~~~-~~~~~~~~~~g~---------~p~vv~lhG~~~~~~-------~~~~~~~~L~~-~~~v~~~D~~G~G~S~ 109 (314)
T 3kxp_A 48 FISRRVDI-GRITLNVREKGS---------GPLMLFFHGITSNSA-------VFEPLMIRLSD-RFTTIAVDQRGHGLSD 109 (314)
T ss_dssp CEEEEEEC-SSCEEEEEEECC---------SSEEEEECCTTCCGG-------GGHHHHHTTTT-TSEEEEECCTTSTTSC
T ss_pred cceeeEEE-CCEEEEEEecCC---------CCEEEEECCCCCCHH-------HHHHHHHHHHc-CCeEEEEeCCCcCCCC
Confidence 34444554 777788776643 378999999876543 23445666766 6999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc---
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT--- 680 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~--- 680 (776)
... .....+++.+.+..+++.. +.++++++||||||.+++.++.++|++++++|+.+|...+.....
T Consensus 110 ~~~--------~~~~~~~~~~dl~~~l~~l--~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (314)
T 3kxp_A 110 KPE--------TGYEANDYADDIAGLIRTL--ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDAL 179 (314)
T ss_dssp CCS--------SCCSHHHHHHHHHHHHHHH--TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHH
T ss_pred CCC--------CCCCHHHHHHHHHHHHHHh--CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHH
Confidence 221 1234566666666665543 336999999999999999999999999999999987654221000
Q ss_pred -------------------cccccccCCCCCCccc---------------------------hhcCChhhhhccCCCcEE
Q 004067 681 -------------------FYTEKYMGLPSEDPVG---------------------------YEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 681 -------------------~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~i~~P~l 714 (776)
.+...+...+...... ....+....+.++++|+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 259 (314)
T 3kxp_A 180 EARVNAGSQLFEDIKAVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVL 259 (314)
T ss_dssp HHHTTTTCSCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEE
T ss_pred HHHhhhchhhhcCHHHHHHHHHhhcccCchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEE
Confidence 0000000000000000 000034455678899999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++|++|..+++..+..+.+.+ .++++++++++||.+ ..+..+.+.+.+.+||++
T Consensus 260 ii~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~g~gH~~-~~e~~~~~~~~i~~fl~~ 314 (314)
T 3kxp_A 260 IVRGESSKLVSAAALAKTSRLR----PDLPVVVVPGADHYV-NEVSPEITLKAITNFIDA 314 (314)
T ss_dssp EEEETTCSSSCHHHHHHHHHHC----TTSCEEEETTCCSCH-HHHCHHHHHHHHHHHHHC
T ss_pred EEecCCCccCCHHHHHHHHHhC----CCceEEEcCCCCCcc-hhhCHHHHHHHHHHHHhC
Confidence 9999999999999888888765 457899999999987 556678899999999974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-17 Score=185.46 Aligned_cols=316 Identities=11% Similarity=0.076 Sum_probs=203.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++|||||++|++.+. ..|++|++.+++. +.+..|. ..+....|||
T Consensus 21 ~~~~~~spdg~~l~~~~~------~~v~l~~~~~~~~~~~~~~h~------------------------~~v~~~~~sp- 69 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNG------TSVYTVPVGSLTDTEIYTEHS------------------------HQTTVAKTSP- 69 (611)
T ss_dssp CCCCEECTTSSEEEEEET------TEEEEEETTCSSCCEEECCCS------------------------SCEEEEEECT-
T ss_pred eeEEeeCCCCCEEEeCCC------CEEEEecCCCcccCeEecCCC------------------------CceEEEEECC-
Confidence 478899999999998753 3699999987655 4444432 3688999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCCCCEEEEEECC-----cEEEEecCCCcee-EEe
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSDGTMIAFVRDC-----ELHVLNLLINEQR-QLT 206 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpDg~~la~~~~~-----~l~~~~l~~g~~~-~lt 206 (776)
||++|+.. .++.|.+||+.+++.. ..+.... ..+..++|||||+.|+..... .|++|+. ++.. .+.
T Consensus 70 --dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~ 144 (611)
T 1nr0_A 70 --SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLT 144 (611)
T ss_dssp --TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCC
T ss_pred --CCcEEEEEeCCCCEEEeECCCCcceeeEeecccC-CceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceec
Confidence 99999987 6788999999765443 1233333 348889999999999988754 4777763 3321 111
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCe-EEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKF-IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
+.. ..+..+.|+||++. |+..+.| .
T Consensus 145 ----------gh~--------~~v~~v~f~p~~~~~l~s~s~D------------------------------------~ 170 (611)
T 1nr0_A 145 ----------GQA--------RAMNSVDFKPSRPFRIISGSDD------------------------------------N 170 (611)
T ss_dssp ----------CCS--------SCEEEEEECSSSSCEEEEEETT------------------------------------S
T ss_pred ----------CCC--------CCceEEEECCCCCeEEEEEeCC------------------------------------C
Confidence 111 12558899999985 6655533 2
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE--------e
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV--------E 357 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~--------~ 357 (776)
.+.+||..+++.... + ..+...+..++|||||+.|+..+ .+..|.+||+.+++...... +
T Consensus 171 ~v~lwd~~~~~~~~~-l-------~~H~~~V~~v~fspdg~~las~s----~D~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 171 TVAIFEGPPFKFKST-F-------GEHTKFVHSVRYNPDGSLFASTG----GDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp CEEEEETTTBEEEEE-E-------CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred eEEEEECCCCeEeee-e-------ccccCceEEEEECCCCCEEEEEE----CCCcEEEEECCCCcEeeeecccccccccc
Confidence 378899887765432 1 46777899999999999887765 45569999998887654432 1
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccC---CeEEEEEEeecCCCcEEEEEEc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEG---DWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~---~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
....+. -.|+| ++.++++...++ .|.+||+.+++. ..+..+ ........ | +++.++..+
T Consensus 239 ~~~V~~---v~~sp--------dg~~l~s~s~D~--~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~s~s- 301 (611)
T 1nr0_A 239 SGSVFG---LTWSP--------DGTKIASASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGII-W--TKQALVSIS- 301 (611)
T ss_dssp SSCEEE---EEECT--------TSSEEEEEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEE-E--CSSCEEEEE-
T ss_pred CCCEEE---EEECC--------CCCEEEEEeCCC--eEEEEeCCCCceeeeecCCCCccceeEEEE-E--cCCEEEEEe-
Confidence 111111 11323 234566666677 899999886653 333221 11122222 4 566544444
Q ss_pred cCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeE
Q 004067 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVL 504 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~ 504 (776)
.++. +.+|... .+. ....+..+. .+..++|||||++|+..... ..|.+||..++...+
T Consensus 302 ~d~~--i~~~~~~---~~~----~~~~~~gh~~~v~~l~~spdg~~l~s~s~D----~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 302 ANGF--INFVNPE---LGS----IDQVRYGHNKAITALSSSADGKTLFSADAE----GHINSWDISTGISNR 360 (611)
T ss_dssp TTCC--EEEEETT---TTE----EEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCEEE
T ss_pred CCCc--EEEEeCC---CCC----cceEEcCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCceee
Confidence 3332 5666532 221 233444443 46788999999988766433 359999998887544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-16 Score=167.57 Aligned_cols=277 Identities=11% Similarity=0.064 Sum_probs=182.2
Q ss_pred cCCCceeEcCCCCEEEEEeCCCC--cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDH--SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
..+..++|||||++|+....... .....|+++|+++++....... +.......|
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------------------~~~~~~~~~ 96 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------------------------DLKPFGATI 96 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE------------------------SSCCCSEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec------------------------CCCcceEEE
Confidence 34578999999999977664321 1135899999999887555432 124567889
Q ss_pred eecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCC--------ccCceeCCCCCEEEEEE---CCcEEEEecCC
Q 004067 133 VKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSP--------VIDPHLSSDGTMIAFVR---DCELHVLNLLI 199 (776)
Q Consensus 133 sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~--------~~~~~~SpDg~~la~~~---~~~l~~~~l~~ 199 (776)
+| ||+++++. .++.|++||+.+++....+....... ...+.|||||+.+++.. ++.|+++|+++
T Consensus 97 s~---dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 97 NN---TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp ET---TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred CC---CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 99 99988876 45789999999988753443322111 35579999999987776 34699999999
Q ss_pred CceeEEee-CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 200 NEQRQLTH-GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 200 g~~~~lt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
++...... .+.. ...++|+|||+.|++...+
T Consensus 174 ~~~~~~~~~~~~~------------------~~~~~~s~dg~~l~~~~~~------------------------------ 205 (353)
T 3vgz_A 174 IKLKTAIQNTGKM------------------STGLALDSEGKRLYTTNAD------------------------------ 205 (353)
T ss_dssp TEEEEEECCCCTT------------------CCCCEEETTTTEEEEECTT------------------------------
T ss_pred CceEEEecCCCCc------------------cceEEECCCCCEEEEEcCC------------------------------
Confidence 88765543 2211 3367899999988765421
Q ss_pred CCCCCeEEEEEEEcCCCceEEE-EcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 279 GASNVKVRLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..|++||+.+++.... .... .........++|+|||+.++.... ....|++||+++++.......
T Consensus 206 ------~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 206 ------GELITIDTADNKILSRKKLLD-----DGKEHFFINISLDTARQRAFITDS---KAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp ------SEEEEEETTTTEEEEEEECCC-----SSSCCCEEEEEEETTTTEEEEEES---SSSEEEEEETTTCCEEEEEEC
T ss_pred ------CeEEEEECCCCeEEEEEEcCC-----CCCCcccceEEECCCCCEEEEEeC---CCCEEEEEECCCCcEEEEEEc
Confidence 3578999998876543 2210 123445677999999997766542 335699999999886554432
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
..+ ..-.|+| +++.+++....++ .|++||+++++.............+ .|++||++||+....
T Consensus 272 ~~~----~~~~~s~-------dg~~l~v~~~~~~--~v~~~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 PES----LAVLFNP-------ARNEAYVTHRQAG--KVSVIDAKSYKVVKTFDTPTHPNSL-ALSADGKTLYVSVKQ 334 (353)
T ss_dssp SSC----CCEEEET-------TTTEEEEEETTTT--EEEEEETTTTEEEEEEECCSEEEEE-EECTTSCEEEEEEEC
T ss_pred CCC----ceEEECC-------CCCEEEEEECCCC--eEEEEECCCCeEEEEEecCCCCCeE-EEcCCCCEEEEEEcc
Confidence 211 0111222 2333444444455 8999999877654433333344444 499999988887654
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=177.43 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=149.2
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC-CCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR 602 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~-g~~ 602 (776)
.+...++. ++..+.++.+.+. ..|+||++||++++.. .|..++..|++ ||.|+++|+||+ |.+
T Consensus 45 ~~~~~v~~-~~~~~~~~~~g~~-------~~~~vv~lHG~~~~~~-------~~~~~~~~L~~-g~~vi~~D~~G~gG~s 108 (306)
T 2r11_A 45 CKSFYIST-RFGQTHVIASGPE-------DAPPLVLLHGALFSST-------MWYPNIADWSS-KYRTYAVDIIGDKNKS 108 (306)
T ss_dssp CEEEEECC-TTEEEEEEEESCT-------TSCEEEEECCTTTCGG-------GGTTTHHHHHH-HSEEEEECCTTSSSSC
T ss_pred cceEEEec-CCceEEEEeeCCC-------CCCeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEecCCCCCCCC
Confidence 45556665 4556777776542 2378999999876644 23345677877 999999999999 655
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc-
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF- 681 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~- 681 (776)
.... ......++.+.+..+++.. +.+++.|+||||||.+++.+|.++|++++++|+.+|..........
T Consensus 109 ~~~~--------~~~~~~~~~~~l~~~l~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 178 (306)
T 2r11_A 109 IPEN--------VSGTRTDYANWLLDVFDNL--GIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDF 178 (306)
T ss_dssp EECS--------CCCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHH
T ss_pred CCCC--------CCCCHHHHHHHHHHHHHhc--CCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHH
Confidence 4311 1234566666666665543 3468999999999999999999999999999999987653211000
Q ss_pred ---------------ccccccCCCCCC------------------------ccchhcCChhhhhccCCCcEEEEecCCCC
Q 004067 682 ---------------YTEKYMGLPSED------------------------PVGYEYSSVMHHVHKMKGKLLLVHGMIDE 722 (776)
Q Consensus 682 ---------------~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~i~~P~lii~G~~D~ 722 (776)
+..+........ ............+.++++|+|+++|++|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~ 258 (306)
T 2r11_A 179 YKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEV 258 (306)
T ss_dssp HHHHHTTTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEEEEETTCC
T ss_pred HHHHhHHHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEEEEeCCCc
Confidence 000000000000 00000112344577889999999999999
Q ss_pred ccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 723 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 723 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.+++..+.++++.+ ..++++++++++||.+ ..+...++.+.+.+||++
T Consensus 259 ~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl~~ 306 (306)
T 2r11_A 259 IYDPHSALHRASSF---VPDIEAEVIKNAGHVL-SMEQPTYVNERVMRFFNA 306 (306)
T ss_dssp SSCHHHHHHHHHHH---STTCEEEEETTCCTTH-HHHSHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHH---CCCCEEEEeCCCCCCC-cccCHHHHHHHHHHHHhC
Confidence 99988777666544 3567999999999976 455678899999999853
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-19 Score=176.82 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=145.5
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|..+++..+.+.+ .+.|+||++||.+++.. .|..++..|++ +|.|+++|+||+|.|....
T Consensus 9 ~~g~~l~y~~~g~~~-----~~~~~vvllHG~~~~~~-------~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~~----- 70 (266)
T 2xua_A 9 VNGTELHYRIDGERH-----GNAPWIVLSNSLGTDLS-------MWAPQVAALSK-HFRVLRYDTRGHGHSEAPK----- 70 (266)
T ss_dssp CSSSEEEEEEESCSS-----SCCCEEEEECCTTCCGG-------GGGGGHHHHHT-TSEEEEECCTTSTTSCCCS-----
T ss_pred ECCEEEEEEEcCCcc-----CCCCeEEEecCccCCHH-------HHHHHHHHHhc-CeEEEEecCCCCCCCCCCC-----
Confidence 378889999887533 12478999999766543 34445777765 5999999999999886421
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---ccc--------
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---YDT-------- 680 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---~~~-------- 680 (776)
....++++.+.+..+++.- ..+++.++||||||.+++.+|.++|++++++|+.++...... +..
T Consensus 71 ---~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 145 (266)
T 2xua_A 71 ---GPYTIEQLTGDVLGLMDTL--KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTE 145 (266)
T ss_dssp ---SCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHhc--CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhc
Confidence 1123555555555555443 345899999999999999999999999999999877543210 000
Q ss_pred ----c---ccccccC------CCC-----------CCccc-------hhcCChhhhhccCCCcEEEEecCCCCccChHHH
Q 004067 681 ----F---YTEKYMG------LPS-----------EDPVG-------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 729 (776)
Q Consensus 681 ----~---~~~~~~~------~~~-----------~~~~~-------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 729 (776)
. ....+.. .+. ..... +...+....+.++++|+|+++|++|..+++..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~ 225 (266)
T 2xua_A 146 GMHALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQG 225 (266)
T ss_dssp CHHHHHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCSSSCHHHH
T ss_pred ChHHHHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCCCcCCHHHH
Confidence 0 0000000 000 00000 011223345678899999999999999999888
Q ss_pred HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 730 ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 730 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
..+.+.+ .+.++++++ +||.+ ..+.++++.+.+.+||.+
T Consensus 226 ~~~~~~~----~~~~~~~~~-~gH~~-~~e~p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 226 RELAQAI----AGARYVELD-ASHIS-NIERADAFTKTVVDFLTE 264 (266)
T ss_dssp HHHHHHS----TTCEEEEES-CCSSH-HHHTHHHHHHHHHHHHTC
T ss_pred HHHHHhC----CCCEEEEec-CCCCc-hhcCHHHHHHHHHHHHHh
Confidence 7777665 456899999 99987 455688899999999864
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=181.54 Aligned_cols=212 Identities=10% Similarity=-0.039 Sum_probs=145.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
+.++++.|.. ++.|+||++|||+....... .+..++..|+ +.||.|+++|+||.+.....
T Consensus 84 ~~~~~~~p~~-----~~~p~vv~lHGgg~~~~~~~----~~~~~~~~la~~~g~~vi~~D~r~~~~~~~~---------- 144 (326)
T 3d7r_A 84 MQVFRFNFRH-----QIDKKILYIHGGFNALQPSP----FHWRLLDKITLSTLYEVVLPIYPKTPEFHID---------- 144 (326)
T ss_dssp EEEEEEESTT-----CCSSEEEEECCSTTTSCCCH----HHHHHHHHHHHHHCSEEEEECCCCTTTSCHH----------
T ss_pred EEEEEEeeCC-----CCCeEEEEECCCcccCCCCH----HHHHHHHHHHHHhCCEEEEEeCCCCCCCCch----------
Confidence 6677788865 34589999999764321111 2233455565 56999999999987643211
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCc----eEEEEEcCCCCCccccccccc--------
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV----FQCAVSGAPVTSWDGYDTFYT-------- 683 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~----~~~~v~~~~~~~~~~~~~~~~-------- 683 (776)
..++|+.++++++.++ ++.++++|+||||||.+|+.++.++|+. ++++|+.+|..+.......+.
T Consensus 145 -~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~ 221 (326)
T 3d7r_A 145 -DTFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDALIEQDA 221 (326)
T ss_dssp -HHHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHHHHHHCS
T ss_pred -HHHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhhhcccCc
Confidence 1268899999999887 4778999999999999999999887665 899999999876432111111
Q ss_pred -----------ccccCCCCCCccchhcCChhhh-hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCC
Q 004067 684 -----------EKYMGLPSEDPVGYEYSSVMHH-VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 751 (776)
Q Consensus 684 -----------~~~~~~~~~~~~~~~~~~~~~~-~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 751 (776)
..+.+.... .....+++.. +.. .+|+|+++|++|.. ...+..+.+++.+.+.++++++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~P~lii~G~~D~~--~~~~~~~~~~l~~~~~~~~~~~~~g~ 295 (326)
T 3d7r_A 222 VLSQFGVNEIMKKWANGLPL---TDKRISPINGTIEG-LPPVYMFGGGREMT--HPDMKLFEQMMLQHHQYIEFYDYPKM 295 (326)
T ss_dssp SCCHHHHHHHHHHHHTTSCT---TSTTTSGGGSCCTT-CCCEEEEEETTSTT--HHHHHHHHHHHHHTTCCEEEEEETTC
T ss_pred ccCHHHHHHHHHHhcCCCCC---CCCeECcccCCccc-CCCEEEEEeCcccc--hHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 001100000 0001122211 111 25999999999963 45678888999999999999999999
Q ss_pred CCCCCC--CCcHHHHHHHHHHHHHHhC
Q 004067 752 RHMPRR--HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 752 ~H~~~~--~~~~~~~~~~~~~fl~~~l 776 (776)
+|.+.. .+...++.+.+.+||++++
T Consensus 296 ~H~~~~~~~~~~~~~~~~i~~fl~~~l 322 (326)
T 3d7r_A 296 VHDFPIYPIRQSHKAIKQIAKSIDEDV 322 (326)
T ss_dssp CTTGGGSSSHHHHHHHHHHHHHHTSCC
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHh
Confidence 998743 3567789999999998764
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=161.70 Aligned_cols=174 Identities=16% Similarity=0.026 Sum_probs=131.0
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
++.|+||++||..++.. .| .+..+++.|+++||.|+++|+||+|.+..... .....+++..+++++.+
T Consensus 2 ~~~~~vv~~HG~~~~~~---~~--~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~-------~~~~~~~~~~~~~~~~~ 69 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPD---AL--KVTALAEVAERLGWTHERPDFTDLDARRDLGQ-------LGDVRGRLQRLLEIARA 69 (176)
T ss_dssp CSSCEEEEECCTTCCTT---SH--HHHHHHHHHHHTTCEEECCCCHHHHTCGGGCT-------TCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcc---HH--HHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCC-------CCCHHHHHHHHHHHHHh
Confidence 35689999999765432 12 12346788999999999999999887642210 01113344555666665
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG 711 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 711 (776)
.. +.++++++||||||.+++.++.++| ++++++.+|......+. ...+++.
T Consensus 70 ~~--~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~~-------------------------~~~~~~~ 120 (176)
T 2qjw_A 70 AT--EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPLP-------------------------ALDAAAV 120 (176)
T ss_dssp HH--TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTBC-------------------------CCCCCSS
T ss_pred cC--CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCccccC-------------------------cccccCC
Confidence 53 3479999999999999999999988 89999988876532110 0456779
Q ss_pred cEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 712 KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 712 P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
|+|+++|++|..+++..+.++++.+ +++++++ +++|.+ .+...++.+.+.+||++
T Consensus 121 P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~-~~~H~~--~~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 121 PISIVHAWHDELIPAADVIAWAQAR-----SARLLLV-DDGHRL--GAHVQAASRAFAELLQS 175 (176)
T ss_dssp CEEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE-SSCTTC--TTCHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCccCHHHHHHHHHhC-----CceEEEe-CCCccc--cccHHHHHHHHHHHHHh
Confidence 9999999999999999999998876 4688888 899987 36788899999999875
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=177.90 Aligned_cols=204 Identities=19% Similarity=0.188 Sum_probs=145.4
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccccccc---chhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh-
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT---VDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK- 611 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~---~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~- 611 (776)
.+++..+.|.+. +.|+||++||++.+.. .|... ...++..|+++||.|+++|+||+|.+.........
T Consensus 49 ~~~~~~~~p~~~-----~~~~vvl~HG~g~~~~---~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~ 120 (328)
T 1qlw_A 49 QMYVRYQIPQRA-----KRYPITLIHGCCLTGM---TWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAV 120 (328)
T ss_dssp CEEEEEEEETTC-----CSSCEEEECCTTCCGG---GGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHH
T ss_pred eEEEEEEccCCC-----CCccEEEEeCCCCCCC---ccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccc
Confidence 366667777652 3367999999875543 23210 01257889999999999999999988654221100
Q ss_pred ------------------------hccC----C---------ccHHH------------------HHHHHHHHHHcCCCC
Q 004067 612 ------------------------HNCG----R---------IDAED------------------QLTGAEWLIKQGLAK 636 (776)
Q Consensus 612 ------------------------~~~~----~---------~~~~D------------------~~~~i~~l~~~~~id 636 (776)
..++ . ..+++ +.+++..+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--- 197 (328)
T 1qlw_A 121 KLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL--- 197 (328)
T ss_dssp HTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH---
T ss_pred cccccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh---
Confidence 0000 0 00112 455555555442
Q ss_pred CCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEE
Q 004067 637 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLV 716 (776)
Q Consensus 637 ~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii 716 (776)
++++++||||||.+++.++.++|++++++|+.+|... . ........+++|+|++
T Consensus 198 -~~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~--------------~-----------~~~~~~~~~~~PvLii 251 (328)
T 1qlw_A 198 -DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC--------------P-----------KPEDVKPLTSIPVLVV 251 (328)
T ss_dssp -TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC--------------C-----------CGGGCGGGTTSCEEEE
T ss_pred -CCceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC--------------C-----------CHHHHhhccCCCEEEE
Confidence 3899999999999999999999999999999887531 0 0111123356899999
Q ss_pred ecCCCCccCh-----HHHHHHHHHHHHCCCCeEEEEecCCC-----CCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 717 HGMIDENVHF-----RHTARLINALVAARKPYEILIFPDER-----HMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 717 ~G~~D~~v~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~-----H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+|++|..+++ +.+..+++.+.+.+.++++++++++| |.+....+..++.+.+.+||++++
T Consensus 252 ~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~~~~ 321 (328)
T 1qlw_A 252 FGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRNT 321 (328)
T ss_dssp ECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHTC
T ss_pred eccCCccccchhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHHhcc
Confidence 9999999997 88999999999988999999999665 987555558899999999998864
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=174.48 Aligned_cols=217 Identities=13% Similarity=0.100 Sum_probs=146.5
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~ 604 (776)
+...+.. +|.++++.... +.|+||++||.+++.. . |..++..|++ ||.|+++|+||+|.+..
T Consensus 4 ~~~~~~~-~~~~~~y~~~g---------~~~~vv~~HG~~~~~~---~----~~~~~~~L~~-~~~vi~~d~~G~G~s~~ 65 (278)
T 3oos_A 4 TTNIIKT-PRGKFEYFLKG---------EGPPLCVTHLYSEYND---N----GNTFANPFTD-HYSVYLVNLKGCGNSDS 65 (278)
T ss_dssp EEEEEEE-TTEEEEEEEEC---------SSSEEEECCSSEECCT---T----CCTTTGGGGG-TSEEEEECCTTSTTSCC
T ss_pred ccCcEec-CCceEEEEecC---------CCCeEEEEcCCCcchH---H----HHHHHHHhhc-CceEEEEcCCCCCCCCC
Confidence 4444555 56677776543 2368999999776543 2 3334667777 99999999999998864
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc----
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT---- 680 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~---- 680 (776)
.... .....+++.+.+..+++.. +.+++.++||||||.+++.++.++|++++++++.+|.........
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~ 137 (278)
T 3oos_A 66 AKND------SEYSMTETIKDLEAIREAL--YINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSI 137 (278)
T ss_dssp CSSG------GGGSHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTST
T ss_pred CCCc------ccCcHHHHHHHHHHHHHHh--CCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchh
Confidence 3211 1123566666666666553 445899999999999999999999999999999988765110000
Q ss_pred -------------cc------------------------------cccccCCCCCCc-----------cchhcCChhhhh
Q 004067 681 -------------FY------------------------------TEKYMGLPSEDP-----------VGYEYSSVMHHV 706 (776)
Q Consensus 681 -------------~~------------------------------~~~~~~~~~~~~-----------~~~~~~~~~~~~ 706 (776)
.. ...+...+.... ..+...+....+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (278)
T 3oos_A 138 YCSKNVKFNRIVSIMNALNDDSTVQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKL 217 (278)
T ss_dssp TSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHH
T ss_pred hhhhchhHHHHHHHHHhhcccccCchHHHHHHHHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHH
Confidence 00 000001111000 011233344567
Q ss_pred ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 707 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 707 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
.++++|+|+++|++|..+++..+..+.+.+ .++++++++++||.+ ..+.++++.+.+.+||
T Consensus 218 ~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl 278 (278)
T 3oos_A 218 KFVKIPSFIYCGKHDVQCPYIFSCEIANLI----PNATLTKFEESNHNP-FVEEIDKFNQFVNDTL 278 (278)
T ss_dssp TTCCSCEEEEEETTCSSSCHHHHHHHHHHS----TTEEEEEETTCSSCH-HHHSHHHHHHHHHHTC
T ss_pred hCCCCCEEEEEeccCCCCCHHHHHHHHhhC----CCcEEEEcCCcCCCc-ccccHHHHHHHHHhhC
Confidence 788999999999999999998888888765 568999999999986 4456777777777664
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-18 Score=170.49 Aligned_cols=209 Identities=15% Similarity=0.129 Sum_probs=146.4
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
.+...+|.++++..+.+ .|+||++||.+++.. .|..++..|+ .||.|+++|+||+|.+....
T Consensus 6 ~~~~~~g~~l~~~~~g~---------~~~vv~lHG~~~~~~-------~~~~~~~~l~-~~~~vi~~d~~G~G~S~~~~- 67 (262)
T 3r0v_A 6 TVPSSDGTPIAFERSGS---------GPPVVLVGGALSTRA-------GGAPLAERLA-PHFTVICYDRRGRGDSGDTP- 67 (262)
T ss_dssp EEECTTSCEEEEEEEEC---------SSEEEEECCTTCCGG-------GGHHHHHHHT-TTSEEEEECCTTSTTCCCCS-
T ss_pred eEEcCCCcEEEEEEcCC---------CCcEEEECCCCcChH-------HHHHHHHHHh-cCcEEEEEecCCCcCCCCCC-
Confidence 35667898898887642 267999999877654 2445577777 89999999999999886431
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc-------
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT------- 680 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~------- 680 (776)
...++++.+.+..+++.. + .++.++||||||.+++.++.++| +++++++.+|.........
T Consensus 68 --------~~~~~~~~~~~~~~~~~l--~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~ 135 (262)
T 3r0v_A 68 --------PYAVEREIEDLAAIIDAA--G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQ 135 (262)
T ss_dssp --------SCCHHHHHHHHHHHHHHT--T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHH
T ss_pred --------CCCHHHHHHHHHHHHHhc--C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHH
Confidence 234566666666665543 3 69999999999999999999999 9999999887654221000
Q ss_pred -----------------cccccccCCCCCCccch------------------------hcCChhhhhccCCCcEEEEecC
Q 004067 681 -----------------FYTEKYMGLPSEDPVGY------------------------EYSSVMHHVHKMKGKLLLVHGM 719 (776)
Q Consensus 681 -----------------~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~i~~P~lii~G~ 719 (776)
.+.......+......+ ........+.++++|+|+++|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 215 (262)
T 3r0v_A 136 TRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPTLVMDGG 215 (262)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTSCCCHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCEEEEECT
T ss_pred HHHHHHhhccchhhHHHHHhhcccCCCHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCEEEEeec
Confidence 00000001110000000 0112345677889999999999
Q ss_pred CCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 720 IDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 720 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+|..++++....+.+.+ .+.++++++++||. +.++++.+.+.+||++
T Consensus 216 ~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~----~~p~~~~~~i~~fl~~ 262 (262)
T 3r0v_A 216 ASPAWIRHTAQELADTI----PNARYVTLENQTHT----VAPDAIAPVLVEFFTR 262 (262)
T ss_dssp TCCHHHHHHHHHHHHHS----TTEEEEECCCSSSS----CCHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHhC----CCCeEEEecCCCcc----cCHHHHHHHHHHHHhC
Confidence 99999988888887765 56799999999993 3688899999999863
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=185.13 Aligned_cols=245 Identities=15% Similarity=0.097 Sum_probs=157.8
Q ss_pred eEEEEEcCCCcEE----EEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccc------cccchhhh---HHHHhCCcEE
Q 004067 525 DIVQIQANDGTVL----YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW------INTVDMRA---QYLRSKGILV 591 (776)
Q Consensus 525 ~~~~~~~~dg~~l----~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~------~~~~~~~~---~~l~~~G~~v 591 (776)
+...++..+|..+ ++..+.+.+. .+.|+||++||.+++......+ ...|..++ ..|...||.|
T Consensus 13 ~~~~~~~~~g~~l~~~i~y~~~g~~~~----~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~v 88 (377)
T 3i1i_A 13 ILKEYTFENGRTIPVQMGYETYGTLNR----ERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFV 88 (377)
T ss_dssp EEEEEECTTSCEEEEEEEEEEESCCCT----TCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEE
T ss_pred eecceeecCCCEeeeeEEEEeecccCC----CCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEE
Confidence 3445666666544 5555654332 3458999999987764421000 00122233 5667889999
Q ss_pred EEECCCCCCCCc--------hhhhhhh-----hhccCCccHHHHHHHHHHHHHcCCCCCCcEE-EEeechHHHHHHHHHh
Q 004067 592 WKLDNRGTARRG--------LKFEASI-----KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLA 657 (776)
Q Consensus 592 ~~~d~rg~g~~~--------~~~~~~~-----~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~ 657 (776)
+++|+||+|.|. ....... ...+..+.++|+.+.+..+++.. +.+++. |+||||||.+++.+|.
T Consensus 89 i~~D~~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~l--~~~~~~ilvGhS~Gg~ia~~~a~ 166 (377)
T 3i1i_A 89 ICTDNLCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKDM--GIARLHAVMGPSAGGMIAQQWAV 166 (377)
T ss_dssp EEECCTTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT--TCCCBSEEEEETHHHHHHHHHHH
T ss_pred EEecccccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHHc--CCCcEeeEEeeCHhHHHHHHHHH
Confidence 999999996532 1000000 01122346788888888777654 345775 9999999999999999
Q ss_pred hCCCceEEEEE-cCCCCCcccc--------------cc-------------------------------cccccccCCCC
Q 004067 658 RFPDVFQCAVS-GAPVTSWDGY--------------DT-------------------------------FYTEKYMGLPS 691 (776)
Q Consensus 658 ~~~~~~~~~v~-~~~~~~~~~~--------------~~-------------------------------~~~~~~~~~~~ 691 (776)
++|++++++|+ .++....... .. .+...+.....
T Consensus 167 ~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (377)
T 3i1i_A 167 HYPHMVERMIGVITNPQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSI 246 (377)
T ss_dssp HCTTTBSEEEEESCCSBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSS
T ss_pred HChHHHHHhcccCcCCCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhc
Confidence 99999999999 6655431000 00 00000000000
Q ss_pred CC-----------ccch------------------------h-------cCChhhhhccCCCcEEEEecCCCCccChHHH
Q 004067 692 ED-----------PVGY------------------------E-------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 729 (776)
Q Consensus 692 ~~-----------~~~~------------------------~-------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 729 (776)
.. ...+ . ..+....+.++++|+|+++|++|.++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~ 326 (377)
T 3i1i_A 247 EVEPYEKVSSLTSFEKEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALSNVEANVLMIPCKQDLLQPSRYN 326 (377)
T ss_dssp CCGGGTCTTCCCHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSEEEEECBTTCSSSCTHHH
T ss_pred cccccccccchhHHHHHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHhhCCCCEEEEecCCccccCHHHH
Confidence 00 0000 0 0111345678899999999999999999999
Q ss_pred HHHHHHHHHCCCCeEEEEecC-CCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 730 ARLINALVAARKPYEILIFPD-ERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 730 ~~~~~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
..+++.+.+.+.+++++++++ +||.. ..+.++++.+.+.+||++++
T Consensus 327 ~~~~~~~~~~g~~~~~~~i~~~~gH~~-~~e~p~~~~~~i~~fl~~~~ 373 (377)
T 3i1i_A 327 YKMVDLLQKQGKYAEVYEIESINGHMA-GVFDIHLFEKKVYEFLNRKV 373 (377)
T ss_dssp HHHHHHHHHTTCCEEECCBCCTTGGGH-HHHCGGGTHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCceEEEcCCCCCCcc-hhcCHHHHHHHHHHHHHhhh
Confidence 999999988778899999998 99976 44567889999999998764
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=172.81 Aligned_cols=202 Identities=10% Similarity=-0.006 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+||++||.+++.. .|..++..|+++||.|+++|+||+|.+..... ......+..+.+..+++...
T Consensus 5 ~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~l~~~l~~l~ 70 (258)
T 3dqz_A 5 HHFVLVHNAYHGAW-------IWYKLKPLLESAGHRVTAVELAASGIDPRPIQ-------AVETVDEYSKPLIETLKSLP 70 (258)
T ss_dssp CEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTTCSSCGG-------GCCSHHHHHHHHHHHHHTSC
T ss_pred CcEEEECCCCCccc-------cHHHHHHHHHhCCCEEEEecCCCCcCCCCCCC-------ccccHHHhHHHHHHHHHHhc
Confidence 89999999876644 34456888999999999999999998865321 11345666666666655532
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-------------ccc----c--------------
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-------------TFY----T-------------- 683 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-------------~~~----~-------------- 683 (776)
. .+++.|+||||||.+++.++.++|++++++|+.+|........ ... .
T Consensus 71 ~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T 3dqz_A 71 E-NEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKM 149 (258)
T ss_dssp T-TCCEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEEC
T ss_pred c-cCceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhh
Confidence 2 2689999999999999999999999999999888754321100 000 0
Q ss_pred ------ccccCCCCC-Cc--------------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCC
Q 004067 684 ------EKYMGLPSE-DP--------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 742 (776)
Q Consensus 684 ------~~~~~~~~~-~~--------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 742 (776)
..+...... .. ..+............++|+|+++|++|..+|+.....+.+.+ .+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~ 225 (258)
T 3dqz_A 150 GPKFMKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNF----NV 225 (258)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHS----CC
T ss_pred hHHHHHHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeCHHHHHHHHHhC----Cc
Confidence 000000000 00 000000111112223579999999999999998888887765 45
Q ss_pred eEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 743 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 743 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
.++++++++||.+ ..+.++++.+.+.+|++++|
T Consensus 226 ~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 226 SKVYEIDGGDHMV-MLSKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp SCEEEETTCCSCH-HHHSHHHHHHHHHHHHHHTC
T ss_pred ccEEEcCCCCCch-hhcChHHHHHHHHHHHHHhC
Confidence 5899999999986 55778999999999999886
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-19 Score=171.63 Aligned_cols=198 Identities=14% Similarity=0.096 Sum_probs=140.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh--
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI-- 610 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~-- 610 (776)
++..+++.++.|.. .+.|+||++||.+++.. .|..++..|++ ||.|+++|.+++...+..+....
T Consensus 14 ~~~~l~~~~~~~~~-----~~~p~vv~lHG~g~~~~-------~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~ 80 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK-----ESRECLFLLHGSGVDET-------TLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDP 80 (223)
T ss_dssp CSSSSCEEEESTTS-----SCCCEEEEECCTTBCTT-------TTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEET
T ss_pred cCCCceEEEeCCCC-----CCCCEEEEEecCCCCHH-------HHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCC
Confidence 34557777776644 23489999999766543 23345666765 99999999876321111111000
Q ss_pred ---hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccccccc
Q 004067 611 ---KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 687 (776)
Q Consensus 611 ---~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 687 (776)
.........+++.+.++.+.++..++.++++|+||||||.+++.++.++|++++++++.+|......
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------- 150 (223)
T 3b5e_A 81 TRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH---------- 150 (223)
T ss_dssp TEECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS----------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc----------
Confidence 0000011255677777777776567889999999999999999999999999999999988753210
Q ss_pred CCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHH
Q 004067 688 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEER 767 (776)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 767 (776)
+ .....+++|+|+++|++|..+++..+. +++.+++.+.++++++++ ++|.+. .+..+.
T Consensus 151 --~-------------~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~~ 208 (223)
T 3b5e_A 151 --V-------------PATDLAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARIIP-SGHDIG-----DPDAAI 208 (223)
T ss_dssp --C-------------CCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEES-CCSCCC-----HHHHHH
T ss_pred --c-------------ccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEec-CCCCcC-----HHHHHH
Confidence 0 012335689999999999999999999 999999988899999999 999873 233568
Q ss_pred HHHHHHHh
Q 004067 768 IWEFIERT 775 (776)
Q Consensus 768 ~~~fl~~~ 775 (776)
+.+||++.
T Consensus 209 i~~~l~~~ 216 (223)
T 3b5e_A 209 VRQWLAGP 216 (223)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHhh
Confidence 88998764
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=175.71 Aligned_cols=201 Identities=12% Similarity=0.106 Sum_probs=140.3
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|+||++||.+++.. .|...+..|++ +|.|+++|+||+|.|..... ..+.++++.+.+..+++.
T Consensus 14 ~~~~vvllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~ 78 (268)
T 3v48_A 14 DAPVVVLISGLGGSGS-------YWLPQLAVLEQ-EYQVVCYDQRGTGNNPDTLA-------EDYSIAQMAAELHQALVA 78 (268)
T ss_dssp TCCEEEEECCTTCCGG-------GGHHHHHHHHT-TSEEEECCCTTBTTBCCCCC-------TTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccHH-------HHHHHHHHHhh-cCeEEEECCCCCCCCCCCcc-------ccCCHHHHHHHHHHHHHH
Confidence 3588999999876643 34455666755 69999999999998854211 123466666666666665
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-----------------cc--------cccccc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-----------------TF--------YTEKYM 687 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-----------------~~--------~~~~~~ 687 (776)
. ..+++.++||||||.+++.+|.++|++++++|+.++........ .. +...+.
T Consensus 79 l--~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (268)
T 3v48_A 79 A--GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWM 156 (268)
T ss_dssp T--TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred c--CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhh
Confidence 4 34589999999999999999999999999999988754321000 00 000000
Q ss_pred CCC--------------CCCc-------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEE
Q 004067 688 GLP--------------SEDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 746 (776)
Q Consensus 688 ~~~--------------~~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 746 (776)
... .... ..+...+....+.++++|+|+++|++|..+|+..+..+.+.+ .+.+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~l~~~~----p~~~~~ 232 (268)
T 3v48_A 157 AARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAAL----PDSQKM 232 (268)
T ss_dssp HTTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSCTHHHHHHHHHC----SSEEEE
T ss_pred hcccccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccCHHHHHHHHHhC----CcCeEE
Confidence 000 0000 001111223456788999999999999999999888887765 567999
Q ss_pred EecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 747 IFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 747 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++++||.+ ..+.++.+.+.+.+||.+.
T Consensus 233 ~~~~~GH~~-~~e~p~~~~~~i~~fl~~~ 260 (268)
T 3v48_A 233 VMPYGGHAC-NVTDPETFNALLLNGLASL 260 (268)
T ss_dssp EESSCCTTH-HHHCHHHHHHHHHHHHHHH
T ss_pred EeCCCCcch-hhcCHHHHHHHHHHHHHHh
Confidence 999999976 6778999999999999864
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-18 Score=166.39 Aligned_cols=202 Identities=14% Similarity=0.021 Sum_probs=136.7
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhC-----CcEEEEECCCCCCC------Cchh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-----GILVWKLDNRGTAR------RGLK 605 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~-----G~~v~~~d~rg~g~------~~~~ 605 (776)
+...++.|.. ++.|+||++||.+++.. .+..++..+... ||.|+++|.++... .+..
T Consensus 11 ~~~~~~~~~~-----~~~p~vv~lHG~g~~~~-------~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 78 (239)
T 3u0v_A 11 LQRCIVSPAG-----RHSASLIFLHGSGDSGQ-------GLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNV 78 (239)
T ss_dssp CCEEEECCSS-----CCCEEEEEECCTTCCHH-------HHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEEC
T ss_pred CCceecCCCC-----CCCcEEEEEecCCCchh-------hHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCcccc
Confidence 3444444433 46799999999766543 233345666654 79999999864311 1110
Q ss_pred hhhh----hhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc
Q 004067 606 FEAS----IKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678 (776)
Q Consensus 606 ~~~~----~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 678 (776)
|... .........++++...+..+++. ..++.++++|+||||||++++.++.++|+.++++++.+|..+....
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 158 (239)
T 3u0v_A 79 WFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA 158 (239)
T ss_dssp SSCCSSSSSSSCCCHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH
T ss_pred ceeccCCCcccccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH
Confidence 1000 00000001234444444444332 4468899999999999999999999999999999999887542210
Q ss_pred cccccccccCCCCCCccchhcCChhhhhccCCCc-EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCC
Q 004067 679 DTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK-LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR 757 (776)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 757 (776)
. +. . ........| +|+++|++|..++++.+..+++.+++.+.+++++++++++|.+.
T Consensus 159 ~-----------------~~---~-~~~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~- 216 (239)
T 3u0v_A 159 V-----------------YQ---A-LQKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELS- 216 (239)
T ss_dssp H-----------------HH---H-HHHCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-
T ss_pred H-----------------HH---H-HHhhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC-
Confidence 0 00 0 002233456 99999999999999999999999999999999999999999874
Q ss_pred CCcHHHHHHHHHHHHHHhC
Q 004067 758 HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 758 ~~~~~~~~~~~~~fl~~~l 776 (776)
.+..+.+.+||+++|
T Consensus 217 ----~~~~~~~~~~l~~~l 231 (239)
T 3u0v_A 217 ----KTELDILKLWILTKL 231 (239)
T ss_dssp ----HHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHhC
Confidence 456788999998875
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=174.22 Aligned_cols=216 Identities=13% Similarity=0.038 Sum_probs=146.0
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.++..+.. +|..+.+..+.+.+ .|+||++||.+++.. .|..++..|+++||.|+++|+||+|.+.
T Consensus 4 ~~~~~~~~-~g~~l~~~~~g~~~-------~~~vv~~hG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 68 (286)
T 3qit_A 4 MEEKFLEF-GGNQICLCSWGSPE-------HPVVLCIHGILEQGL-------AWQEVALPLAAQGYRVVAPDLFGHGRSS 68 (286)
T ss_dssp CEEEEEEE-TTEEEEEEEESCTT-------SCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSC
T ss_pred hhhheeec-CCceEEEeecCCCC-------CCEEEEECCCCcccc-------hHHHHHHHhhhcCeEEEEECCCCCCCCC
Confidence 45555655 78889999987533 378999999877654 3455688899999999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-c--
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T-- 680 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-~-- 680 (776)
..... ......++.+.+..+++.. +.+++.++||||||.+++.++.++|++++++++.+|........ .
T Consensus 69 ~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 140 (286)
T 3qit_A 69 HLEMV------TSYSSLTFLAQIDRVIQEL--PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESA 140 (286)
T ss_dssp CCSSG------GGCSHHHHHHHHHHHHHHS--CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---CCH
T ss_pred CCCCC------CCcCHHHHHHHHHHHHHhc--CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccchhh
Confidence 43211 1223566666666666653 44689999999999999999999999999999998865422110 0
Q ss_pred ------c------------cccc------c-cCCCCCCc-----------------------cc--------h-----hc
Q 004067 681 ------F------------YTEK------Y-MGLPSEDP-----------------------VG--------Y-----EY 699 (776)
Q Consensus 681 ------~------------~~~~------~-~~~~~~~~-----------------------~~--------~-----~~ 699 (776)
. +... . ...+.... .. + ..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (286)
T 3qit_A 141 VNQLTTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGR 220 (286)
T ss_dssp HHHHHHHHHHHTCCCCCCCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTTHH
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHhhcCCcccCHHHHHHHhhccccccccceeeeechhhhccccccccccccch
Confidence 0 0000 0 00000000 00 0 11
Q ss_pred CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHH
Q 004067 700 SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 768 (776)
Q Consensus 700 ~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 768 (776)
.+....+.++++|+|+++|++|..++++....+.+.+ .+++++++++ ||.+ ..+.++++.+.+
T Consensus 221 ~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~g-gH~~-~~e~p~~~~~~i 283 (286)
T 3qit_A 221 SQYLEMLKSIQVPTTLVYGDSSKLNRPEDLQQQKMTM----TQAKRVFLSG-GHNL-HIDAAAALASLI 283 (286)
T ss_dssp HHHHHHHHHCCSCEEEEEETTCCSSCHHHHHHHHHHS----TTSEEEEESS-SSCH-HHHTHHHHHHHH
T ss_pred hHHHHHHhccCCCeEEEEeCCCcccCHHHHHHHHHHC----CCCeEEEeeC-CchH-hhhChHHHHHHh
Confidence 1223345788999999999999999998888877665 4568999999 9976 344555544444
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=171.57 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=134.4
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCcc
Q 004067 539 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 618 (776)
Q Consensus 539 ~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~ 618 (776)
+.+|.|.....+.++.|+||++||++++.. .+..++..|+++||.|+++|+|+++ .
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~ 89 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAGPS-------TYAGLLSHWASHGFVVAAAETSNAG-----------------T 89 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCCGG-------GGHHHHHHHHHHTCEEEEECCSCCT-----------------T
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCCch-------hHHHHHHHHHhCCeEEEEecCCCCc-----------------c
Confidence 778888752111137899999999876543 3455688899999999999999531 1
Q ss_pred HHHHHHHHHHHHHc---------CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCC
Q 004067 619 AEDQLTGAEWLIKQ---------GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 689 (776)
Q Consensus 619 ~~D~~~~i~~l~~~---------~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (776)
..|+..+++++.+. ..++.++++++||||||++++.++ .+.+++++++.+|.... .
T Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~-------------~ 154 (258)
T 2fx5_A 90 GREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG-------------L 154 (258)
T ss_dssp SHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSS-------------T
T ss_pred HHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccc-------------c
Confidence 23445555555442 245678999999999999999888 45678888887764320 0
Q ss_pred CCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHH-HHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHH
Q 004067 690 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 768 (776)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 768 (776)
+. ....+.++++|+|+++|++|..+++.. ...+++. .+.+++++++++++|.+. .+...++.+.+
T Consensus 155 ~~----------~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~-~~~~~~~~~~i 220 (258)
T 2fx5_A 155 GH----------DSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERRYVSHFEP-VGSGGAYRGPS 220 (258)
T ss_dssp TC----------CGGGGGCCSSCEEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEESSCCTTSS-TTTCGGGHHHH
T ss_pred cc----------chhhhccCCCCEEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEECCCCCccc-cchHHHHHHHH
Confidence 00 113466788999999999999999886 7777665 356799999999999873 34456788999
Q ss_pred HHHHHHhC
Q 004067 769 WEFIERTL 776 (776)
Q Consensus 769 ~~fl~~~l 776 (776)
.+||+++|
T Consensus 221 ~~fl~~~l 228 (258)
T 2fx5_A 221 TAWFRFQL 228 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998653
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=169.45 Aligned_cols=225 Identities=17% Similarity=0.140 Sum_probs=141.1
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
|...+...+...+|.++++..+.+.+ +.|.||++||.+++.. .|..++..|++ +|.|+++|+||+|
T Consensus 2 ~~~~~~~~~~~~~g~~l~~~~~g~~~------~~~~vvllHG~~~~~~-------~~~~~~~~L~~-~~~vi~~Dl~G~G 67 (285)
T 3bwx_A 2 MAEYEDRYWTSSDGLRLHFRAYEGDI------SRPPVLCLPGLTRNAR-------DFEDLATRLAG-DWRVLCPEMRGRG 67 (285)
T ss_dssp CCSSEEEEEECTTSCEEEEEEECBCT------TSCCEEEECCTTCCGG-------GGHHHHHHHBB-TBCEEEECCTTBT
T ss_pred CCccccCeeecCCCceEEEEEcCCCC------CCCcEEEECCCCcchh-------hHHHHHHHhhc-CCEEEeecCCCCC
Confidence 33456777888899999999887543 1367999999876543 34556777776 8999999999999
Q ss_pred CCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC--CCcc--
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV--TSWD-- 676 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~--~~~~-- 676 (776)
.|...... ..+.++++.+.+..+++.. ..+++.|+||||||.+|+.+|.++|++++++|+.++. ....
T Consensus 68 ~S~~~~~~------~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 139 (285)
T 3bwx_A 68 DSDYAKDP------MTYQPMQYLQDLEALLAQE--GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGL 139 (285)
T ss_dssp TSCCCSSG------GGCSHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHH
T ss_pred CCCCCCCc------cccCHHHHHHHHHHHHHhc--CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcccCcchh
Confidence 88642100 0112333333333333321 3358999999999999999999999999999986432 1100
Q ss_pred --------------ccc---cc----cccc----------------ccCCCCC------Cc---cchhc-------CChh
Q 004067 677 --------------GYD---TF----YTEK----------------YMGLPSE------DP---VGYEY-------SSVM 703 (776)
Q Consensus 677 --------------~~~---~~----~~~~----------------~~~~~~~------~~---~~~~~-------~~~~ 703 (776)
.+. .. +... +...+.. .. ..+.. .+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (285)
T 3bwx_A 140 ERIRGYVGQGRNFETWMHAARALQESSGDVYPDWDITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGATPQVDMW 219 (285)
T ss_dssp HHHHHHTTCCCEESSHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCCCSSCCH
T ss_pred HHHHHHhcCCcccccHHHHHHHHHHhhhhcccccChHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhccccchhh
Confidence 000 00 0000 0000000 00 00000 0111
Q ss_pred hhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 704 HHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 704 ~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
..+.++ ++|+|+++|++|..+++.....+. +. .+.++++++++||.. ..+.++.+ ..+.+||.+
T Consensus 220 ~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~----~~-~~~~~~~i~~~gH~~-~~e~p~~~-~~i~~fl~~ 284 (285)
T 3bwx_A 220 PLFDALATRPLLVLRGETSDILSAQTAAKMA----SR-PGVELVTLPRIGHAP-TLDEPESI-AAIGRLLER 284 (285)
T ss_dssp HHHHHHTTSCEEEEEETTCSSSCHHHHHHHH----TS-TTEEEEEETTCCSCC-CSCSHHHH-HHHHHHHTT
T ss_pred HHHHHccCCCeEEEEeCCCCccCHHHHHHHH----hC-CCcEEEEeCCCCccc-hhhCchHH-HHHHHHHHh
Confidence 123344 799999999999999987665543 44 678999999999986 44555554 689999864
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=185.21 Aligned_cols=220 Identities=13% Similarity=0.097 Sum_probs=147.9
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~ 604 (776)
..+.+.+.+|..+++.... ..|+||++||++++.. .|..++..|++.||.|+++|+||+|.+..
T Consensus 4 i~~~~~~~dG~~l~y~~~G---------~gp~VV~lHG~~~~~~-------~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~ 67 (456)
T 3vdx_A 4 ITVGQENSTSIDLYYEDHG---------TGVPVVLIHGFPLSGH-------SWERQSAALLDAGYRVITYDRRGFGQSSQ 67 (456)
T ss_dssp EEEEEETTEEEEEEEEEES---------SSEEEEEECCTTCCGG-------GGTTHHHHHHHHTEEEEEECCTTSTTSCC
T ss_pred EeecccccCCeEEEEEEeC---------CCCEEEEECCCCCcHH-------HHHHHHHHHHHCCcEEEEECCCCCCCCCC
Confidence 4455667788888876553 2388999999877644 23456788888999999999999998864
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCcccccc---
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDGYDT--- 680 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~~~~~--- 680 (776)
... ...++++.+.+..+++.. +.++++++||||||++++.+++.+ |++++++++.+|...+.....
T Consensus 68 ~~~--------~~s~~~~a~dl~~~l~~l--~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~ 137 (456)
T 3vdx_A 68 PTT--------GYDYDTFAADLNTVLETL--DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNP 137 (456)
T ss_dssp CSS--------CCSHHHHHHHHHHHHHHH--TCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCC
T ss_pred CCC--------CCCHHHHHHHHHHHHHHh--CCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccc
Confidence 321 122444444444333321 446899999999999999988877 899999999988754211000
Q ss_pred -------------------------cccccccCCCCC-----Cccch---------------------hcCChhhhhccC
Q 004067 681 -------------------------FYTEKYMGLPSE-----DPVGY---------------------EYSSVMHHVHKM 709 (776)
Q Consensus 681 -------------------------~~~~~~~~~~~~-----~~~~~---------------------~~~~~~~~~~~i 709 (776)
.+...+...... ....+ ...+....+.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i 217 (456)
T 3vdx_A 138 DGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRI 217 (456)
T ss_dssp SCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTC
T ss_pred cccchHHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhC
Confidence 000000000000 00000 011233456788
Q ss_pred CCcEEEEecCCCCccChH-HHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 710 KGKLLLVHGMIDENVHFR-HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++|+|+++|+.|..+++. ....+.+. ..+++++++++++|.+ ..+.+..+.+.+.+||+++
T Consensus 218 ~~PvLiI~G~~D~~vp~~~~~~~l~~~----~~~~~~~~i~gagH~~-~~e~p~~v~~~I~~FL~~~ 279 (456)
T 3vdx_A 218 DVPALILHGTGDRTLPIENTARVFHKA----LPSAEYVEVEGAPHGL-LWTHAEEVNTALLAFLAKA 279 (456)
T ss_dssp CSCCEEEEETTCSSSCGGGTHHHHHHH----CTTSEEEEETTCCSCT-TTTTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCcCHHHHHHHHHHH----CCCceEEEeCCCCCcc-hhhCHHHHHHHHHHHHHHh
Confidence 899999999999999988 44444443 3568999999999987 4578899999999999875
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=176.34 Aligned_cols=215 Identities=14% Similarity=0.077 Sum_probs=140.1
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhcc
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 614 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~ 614 (776)
..+++....|.+ +.|.||++||.+++.. .|...+..|++.||.|+++|+||+|.|......
T Consensus 34 ~~l~y~~~G~~~------~g~~vvllHG~~~~~~-------~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~~~------ 94 (310)
T 1b6g_A 34 LRAHYLDEGNSD------AEDVFLCLHGEPTWSY-------LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDE------ 94 (310)
T ss_dssp CEEEEEEEECTT------CSCEEEECCCTTCCGG-------GGTTTHHHHHHTTCEEEEECCTTSTTSCEESCG------
T ss_pred eEEEEEEeCCCC------CCCEEEEECCCCCchh-------hHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCCc------
Confidence 889988876532 1368999999876543 344567889999999999999999998643110
Q ss_pred CCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC--cc----------ccc---
Q 004067 615 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS--WD----------GYD--- 679 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~--~~----------~~~--- 679 (776)
..+.++++.+.+..+++.- +.+++.|+||||||.+|+.+|.++|++++++|+.++... .. ...
T Consensus 95 ~~y~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (310)
T 1b6g_A 95 EDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGF 172 (310)
T ss_dssp GGCCHHHHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTH
T ss_pred CCcCHHHHHHHHHHHHHHc--CCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHH
Confidence 1123455555444444432 345899999999999999999999999999998876431 00 000
Q ss_pred cccc------ccc-----c--CCCCCCc---cchh--------------------cC---------Chhhhhc-cCCCcE
Q 004067 680 TFYT------EKY-----M--GLPSEDP---VGYE--------------------YS---------SVMHHVH-KMKGKL 713 (776)
Q Consensus 680 ~~~~------~~~-----~--~~~~~~~---~~~~--------------------~~---------~~~~~~~-~i~~P~ 713 (776)
..+. ... . ....... ..|. .. .....+. ++++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~ 252 (310)
T 1b6g_A 173 TAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQT 252 (310)
T ss_dssp HHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEE
T ss_pred HHHHHHhccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCce
Confidence 0000 000 0 0000000 0000 00 0112345 899999
Q ss_pred EEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 714 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 714 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
|+++|++|..++ ..+..+.+.+. +.....++++++||.. .. .++++.+.+.+||.+.
T Consensus 253 Lvi~G~~D~~~~-~~~~~~~~~ip--~~~~~~i~~~~~GH~~-~~-~p~~~~~~i~~Fl~~~ 309 (310)
T 1b6g_A 253 FMAIGMKDKLLG-PDVMYPMKALI--NGCPEPLEIADAGHFV-QE-FGEQVAREALKHFAET 309 (310)
T ss_dssp EEEEETTCSSSS-HHHHHHHHHHS--TTCCCCEEETTCCSCG-GG-GHHHHHHHHHHHHHHT
T ss_pred EEEeccCcchhh-hHHHHHHHhcc--cccceeeecCCcccch-hh-ChHHHHHHHHHHHhcc
Confidence 999999999999 77777777662 2223333349999987 55 8999999999999763
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=171.79 Aligned_cols=184 Identities=14% Similarity=0.032 Sum_probs=133.9
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEE--CCCCCCCCchhhh-hhh--hhccCCccHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL--DNRGTARRGLKFE-ASI--KHNCGRIDAEDQLTGA 626 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~--d~rg~g~~~~~~~-~~~--~~~~~~~~~~D~~~~i 626 (776)
++.|+||++||++++.. .|..+++.|++ +|.|+++ |++|+|++..... ... .........+|+.+++
T Consensus 60 ~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 131 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGDEN-------QFFDFGARLLP-QATILSPVGDVSEHGAARFFRRTGEGVYDMVDLERATGKMADFI 131 (251)
T ss_dssp TTSCEEEEECCTTCCHH-------HHHHHHHHHST-TSEEEEECCSEEETTEEESSCBCGGGCBCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHh-------HHHHHHHhcCC-CceEEEecCCcCCCCCcccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence 36699999999876543 23445667766 4999999 7888876531100 000 0000011256777777
Q ss_pred HHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhh
Q 004067 627 EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 706 (776)
Q Consensus 627 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (776)
+++.++. +.++++|+||||||++++.++.++|++++++|+.+|...... ....
T Consensus 132 ~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~-------------------------~~~~ 184 (251)
T 2r8b_A 132 KANREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------KISP 184 (251)
T ss_dssp HHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC-------------------------CCCC
T ss_pred HHHHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc-------------------------cccc
Confidence 7776654 668999999999999999999999999999999998754321 0112
Q ss_pred ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 707 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 707 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
..+++|+|+++|++|..+++..+.++++.+.+.+..+++ ++++++|.+ ..+..+.+.+||.++|
T Consensus 185 ~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~-----~~~~~~~~~~~l~~~l 248 (251)
T 2r8b_A 185 AKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVET-VWHPGGHEI-----RSGEIDAVRGFLAAYG 248 (251)
T ss_dssp CCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEESSCSSC-----CHHHHHHHHHHHGGGC
T ss_pred cccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-EecCCCCcc-----CHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999877777766 666789987 2334688899998875
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=190.69 Aligned_cols=243 Identities=15% Similarity=0.163 Sum_probs=166.4
Q ss_pred hhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc-----cccc-------cc---c-hh
Q 004067 516 IKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC-----DSWI-------NT---V-DM 579 (776)
Q Consensus 516 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~-----~~~~-------~~---~-~~ 579 (776)
+.+.++...+.+.|+..||.+|.+.+|.|++. +++|+||+.||........ ..|. .. | ..
T Consensus 33 ~~~~~~~~~~~v~i~~~DG~~L~a~l~~P~~~----~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 108 (560)
T 3iii_A 33 YGNQEMIMEKDGTVEMRDGEKLYINIFRPNKD----GKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESP 108 (560)
T ss_dssp TEEEEEEEEEEEEEECTTSCEEEEEEEECSSS----SCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSC
T ss_pred cCCCceEEEEEEEEECCCCcEEEEEEEecCCC----CCCCEEEEecCCCCCcccccccccccccccccccccccccccCC
Confidence 33444556788999999999999999999863 6899999999865542100 0010 00 0 11
Q ss_pred hhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 580 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 580 ~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
.++.|+++||+|+.+|+||+|+|+..+. .++..+.+|+.++++|+.++++.+ .+|+++|+||||++++.+|+.+
T Consensus 109 ~~~~la~~Gy~vv~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~ 182 (560)
T 3iii_A 109 DPGFWVPNDYVVVKVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLN 182 (560)
T ss_dssp CHHHHGGGTCEEEEEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTC
T ss_pred CHHHHHhCCCEEEEEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcC
Confidence 3678999999999999999999986653 223356899999999999987766 8999999999999999999999
Q ss_pred CCceEEEEEcCCCCCccc---ccc---------cccc----c-------------ccCCCCCCccchhcCChhhhhccCC
Q 004067 660 PDVFQCAVSGAPVTSWDG---YDT---------FYTE----K-------------YMGLPSEDPVGYEYSSVMHHVHKMK 710 (776)
Q Consensus 660 ~~~~~~~v~~~~~~~~~~---~~~---------~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~~i~ 710 (776)
|+.++|+|+.+|+.++.. +.. .+.. . +...+. ....|...++ .+.+|+
T Consensus 183 p~~l~aiv~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~-~d~~W~~~~~--~~~~I~ 259 (560)
T 3iii_A 183 PPHLKAMIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPL-FDDFWKQRQV--PLSQIK 259 (560)
T ss_dssp CTTEEEEEEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCS-SCHHHHTTBC--CGGGCC
T ss_pred CCceEEEEecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCC-cchHhhccCC--chhhCC
Confidence 999999999999988531 100 0000 0 000111 1123333333 578999
Q ss_pred CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 711 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+|+|+++|..|..+....+.+.++++... ...+++.+ .+|.. . ....+..+.+.+||+++|
T Consensus 260 vPvl~v~Gw~D~~~~~~g~l~~y~~l~~~--~k~l~ih~-~~~~~-~-~~~~~~~~~~~~wfD~~L 320 (560)
T 3iii_A 260 TPLLTCASWSTQGLHNRGSFEGFKQAASE--EKWLYVHG-RKEWE-S-YYARENLERQKSFFDFYL 320 (560)
T ss_dssp SCEEEEEEGGGTTTTHHHHHHHHHHCCCS--SEEEEEES-SCHHH-H-HHSHHHHHHHHHHHHHHT
T ss_pred CCEEEeCCcCCCcccchhHHHHHHhcccc--CcEEEECC-CCCcC-c-ccChhHHHHHHHHHHHHh
Confidence 99999999999756666667777776432 23444432 22321 0 012245678899999987
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=174.19 Aligned_cols=238 Identities=12% Similarity=0.093 Sum_probs=162.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|||.+...+.+..+||++++++++.++++.. .. +..+.|||
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~------------------------~~-~~~~~wsp-- 113 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA------------------------KN-IRSLEWNE-- 113 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE------------------------SE-EEEEEECT--
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC------------------------CC-ccceeECC--
Confidence 3789999999999999875433346899999999999888852 12 77899999
Q ss_pred CCceEEEEeC----------------------------CCcEEEEeCCCCcc-ceecCCCCCCCccCceeCCCCCEEEEE
Q 004067 137 SKKKIIMVPL----------------------------PDGIYFQDLSCSKP-ELKLSSSSCSPVIDPHLSSDGTMIAFV 187 (776)
Q Consensus 137 ~dg~~l~~~~----------------------------~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~SpDg~~la~~ 187 (776)
||++|+|.. ..+||++|+.+++. + .++. + .+..+.||||| ++|+
T Consensus 114 -dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~-~l~~-~--~~~~~~~spdg--~~~~ 186 (347)
T 2gop_A 114 -DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE-EFEK-P--RFSSGIWHRDK--IVVN 186 (347)
T ss_dssp -TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE-EEEE-E--TTCEEEEETTE--EEEE
T ss_pred -CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe-eecC-C--CcccccCCCCe--EEEE
Confidence 999999984 24699999999988 6 6665 3 47889999999 7777
Q ss_pred EC-----------CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEE
Q 004067 188 RD-----------CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFR 256 (776)
Q Consensus 188 ~~-----------~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 256 (776)
.. .+||+++ +|+.++++.. .. ...+||||++|+|.+.+....
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~--------------------~~~~spdg~~l~~~~~~~~~~---- 239 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VS--------------------FYAVDSDGERILLYGKPEKKY---- 239 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ES--------------------EEEEEECSSCEEEEECCSSSC----
T ss_pred EecccccccccccccEEEeC--CCceEEeccC-cc--------------------eeeECCCCCEEEEEEccccCC----
Confidence 62 2588888 7887777653 11 123499999999987532110
Q ss_pred EeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEE-EEeccCCeEEEEEEeec
Q 004067 257 IMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLAR-VNWMHGNILTAQVLNRS 335 (776)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~SpDg~~l~~~~~~~ 335 (776)
......|+++| +++.+.+. ......+.. +.|+ || +++.....
T Consensus 240 ------------------------~~~~~~l~~~d--~~~~~~l~--------~~~~~~~~~~~~~s-dg--~~~~~~~~ 282 (347)
T 2gop_A 240 ------------------------MSEHNKLYIYD--GKEVMGIL--------DEVDRGVGQAKIKD-GK--VYFTLFEE 282 (347)
T ss_dssp ------------------------CCSSCEEEEEC--SSCEEESS--------TTCCSEEEEEEEET-TE--EEEEEEET
T ss_pred ------------------------ccccceEEEEC--CCceEecc--------ccCCcccCCccEEc-Cc--EEEEEecC
Confidence 00125689998 66665552 233456665 8999 88 44444443
Q ss_pred CceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCce-EEEEEeCCCceeeccccCC
Q 004067 336 QTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR-HLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 336 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~-~l~~~~~~g~~~~~lt~~~ 412 (776)
....|| ++ +|+.+.++..... +.. +++++ .++++....+.. .||.++ ++.++||..+
T Consensus 283 -~~~~l~-~~--~g~~~~~~~~~~~--v~~----------~~~s~-~~~~~~~~~~~~~~l~~~~---g~~~~lt~~n 340 (347)
T 2gop_A 283 -GSVNLY-IW--DGEIKPIAKGRHW--IMG----------FDVDE-IVVYLKETATRLRELFTWD---GEEKQLTDYN 340 (347)
T ss_dssp -TEEEEE-EE--SSSEEEEECSSSE--EEE----------EEESS-SEEEEEECSSSCCEEEEES---SSEEECCCTT
T ss_pred -CcEEEE-Ec--CCceEEEecCCCe--EEe----------eeeeC-cEEEEEcCCCChHHheEeC---CcEEEecccc
Confidence 356788 87 4666666543211 110 12334 577776655544 899998 5577787654
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.3e-18 Score=178.56 Aligned_cols=232 Identities=14% Similarity=0.091 Sum_probs=154.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccc----------cccccchhhh---HHHHhCCcEEEEECCCC-
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCD----------SWINTVDMRA---QYLRSKGILVWKLDNRG- 598 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~----------~~~~~~~~~~---~~l~~~G~~v~~~d~rg- 598 (776)
+|..+++..+.+.+. ++.|+||++||.+++..... .| ..++ ..|.+.||.|+++|+||
T Consensus 29 ~g~~l~y~~~g~~~~----~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~l~~~g~~vi~~D~~G~ 100 (366)
T 2pl5_A 29 SPVVIAYETYGTLSS----SKNNAILICHALSGDAHAAGYHSGSDKKPGWW----DDYIGPGKSFDTNQYFIICSNVIGG 100 (366)
T ss_dssp SSEEEEEEEEECCCT----TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTT----TTTEETTSSEETTTCEEEEECCTTC
T ss_pred cCceeeEEeccCcCC----CCCceEEEecccCCcccccccccccccccchH----HhhcCCcccccccccEEEEecCCCc
Confidence 455788888776542 23589999999876643100 23 2223 23557899999999999
Q ss_pred -CCCCchhhhhhh-----hhccCCccHHHHHHHHHHHHHcCCCCCCcE-EEEeechHHHHHHHHHhhCCCceEEEEEcCC
Q 004067 599 -TARRGLKFEASI-----KHNCGRIDAEDQLTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAP 671 (776)
Q Consensus 599 -~g~~~~~~~~~~-----~~~~~~~~~~D~~~~i~~l~~~~~id~~~i-~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~ 671 (776)
+|.++....... ........++++.+.+..+++.. +.+++ .|+||||||.+++.+|.++|++++++|+.+|
T Consensus 101 ~~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~l--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 178 (366)
T 2pl5_A 101 CKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESL--GIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAS 178 (366)
T ss_dssp SSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT--TCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred ccCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHHc--CCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEecc
Confidence 777653211000 01111245777777777776653 44688 7999999999999999999999999999988
Q ss_pred CCCcccccc---------------------------------------------cccccccCCC--------CCCccch-
Q 004067 672 VTSWDGYDT---------------------------------------------FYTEKYMGLP--------SEDPVGY- 697 (776)
Q Consensus 672 ~~~~~~~~~---------------------------------------------~~~~~~~~~~--------~~~~~~~- 697 (776)
......... .+...+.... ......+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (366)
T 2pl5_A 179 TAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYL 258 (366)
T ss_dssp CSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGG
T ss_pred CccCCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHH
Confidence 654211000 0000000000 0000000
Q ss_pred -----------------------hcCC------hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEe
Q 004067 698 -----------------------EYSS------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 748 (776)
Q Consensus 698 -----------------------~~~~------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 748 (776)
...+ ....+.++++|+|+++|++|.++++..+..+.+.+...+.+++++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (366)
T 2pl5_A 259 IYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVEL 338 (366)
T ss_dssp GSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHhhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEe
Confidence 0000 12256788999999999999999999999999999876667899999
Q ss_pred -cCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 749 -PDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 749 -~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++||.+ ..+..+++.+.+.+||+++
T Consensus 339 ~~~~gH~~-~~e~p~~~~~~i~~fl~~~ 365 (366)
T 2pl5_A 339 QSGEGHDS-FLLKNPKQIEILKGFLENP 365 (366)
T ss_dssp CCCBSSGG-GGSCCHHHHHHHHHHHHCC
T ss_pred CCCCCcch-hhcChhHHHHHHHHHHccC
Confidence 8999987 4456789999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-16 Score=164.79 Aligned_cols=279 Identities=11% Similarity=-0.009 Sum_probs=189.0
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+..++|||||+.|+..+ + ..|.+|++.+++... +..... ..+...+....|+|
T Consensus 53 ~v~~~~~~~~~~~l~~~~--d----g~i~iw~~~~~~~~~~~~~~~~-------------------~~~~~~v~~~~~~~ 107 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG--K----GCVKVWDISHPGNKSPVSQLDC-------------------LNRDNYIRSCKLLP 107 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--B----SEEEEEETTSTTCCSCSEEEEC-------------------SCTTSBEEEEEECT
T ss_pred ceEEEEEecCCcEEEEcC--C----CeEEEEECCCCCceeeeecccc-------------------cCCCCcEEEEEEcC
Confidence 358999999999999765 2 469999998765311 110000 00124688999999
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~ 210 (776)
||+.|+.. .++.|++||+.+++.. ..+.... ..+..+.|+|||+.|+.... +.|++|++.+++.........
T Consensus 108 ---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 183 (337)
T 1gxr_A 108 ---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp ---TSSEEEEEESSSEEEEEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ---CCCEEEEEcCCCcEEEEECCCCCcceeeecccCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence 99998876 6788999999988743 1333332 24778999999999988875 579999999887654433211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
. .+..+.|+|||+.|+....+ ..|++|
T Consensus 184 ~-----------------~i~~~~~~~~~~~l~~~~~d------------------------------------g~i~~~ 210 (337)
T 1gxr_A 184 D-----------------GASCIDISNDGTKLWTGGLD------------------------------------NTVRSW 210 (337)
T ss_dssp S-----------------CEEEEEECTTSSEEEEEETT------------------------------------SEEEEE
T ss_pred C-----------------ceEEEEECCCCCEEEEEecC------------------------------------CcEEEE
Confidence 1 14578899999988876632 358999
Q ss_pred EcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccc
Q 004067 291 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFT 370 (776)
Q Consensus 291 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 370 (776)
|+.+++.... ......+..+.|+|||+.++... .+..|++||+.+++...+..+...... -.|+
T Consensus 211 d~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~~----~~~~i~~~~~~~~~~~~~~~~~~~v~~---~~~~ 274 (337)
T 1gxr_A 211 DLREGRQLQQ---------HDFTSQIFSLGYCPTGEWLAVGM----ESSNVEVLHVNKPDKYQLHLHESCVLS---LKFA 274 (337)
T ss_dssp ETTTTEEEEE---------EECSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTSSCEEEECCCSSCEEE---EEEC
T ss_pred ECCCCceEee---------ecCCCceEEEEECCCCCEEEEEc----CCCcEEEEECCCCCeEEEcCCccceeE---EEEC
Confidence 9998876554 22345688899999999887765 334599999998887655444332111 1122
Q ss_pred cCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 371 PLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
| ++.++++...+| .|++|++..++......+...+..+. |+++++.|+..+. ++ .+.+|.+-
T Consensus 275 ~--------~~~~l~~~~~dg--~i~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~-dg--~i~iw~~~ 336 (337)
T 1gxr_A 275 Y--------CGKWFVSTGKDN--LLNAWRTPYGASIFQSKESSSVLSCD-ISVDDKYIVTGSG-DK--KATVYEVI 336 (337)
T ss_dssp T--------TSSEEEEEETTS--EEEEEETTTCCEEEEEECSSCEEEEE-ECTTSCEEEEEET-TS--CEEEEEEE
T ss_pred C--------CCCEEEEecCCC--cEEEEECCCCeEEEEecCCCcEEEEE-ECCCCCEEEEecC-CC--eEEEEEEe
Confidence 2 234566666677 89999988776654444455566654 9999997666554 33 37888763
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-19 Score=187.95 Aligned_cols=234 Identities=14% Similarity=0.119 Sum_probs=152.3
Q ss_pred EEEEcCCCcEEEEEEEcCCCC--CCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH----hCCc---EEEEECCC
Q 004067 527 VQIQANDGTVLYGALYKPDES--RYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR----SKGI---LVWKLDNR 597 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~--~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~----~~G~---~v~~~d~r 597 (776)
..+...||..+++..+.|.+. ....++.|+||++||.+++.. .|..++..|+ ..|| .|+++|+|
T Consensus 23 ~~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~-------~~~~~~~~L~~~~~~~G~~~~~vi~~D~~ 95 (398)
T 2y6u_A 23 STLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKV-------VWEYYLPRLVAADAEGNYAIDKVLLIDQV 95 (398)
T ss_dssp SBSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGG-------GGGGGGGGSCCCBTTTTEEEEEEEEECCT
T ss_pred ccccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHH-------HHHHHHHHHHHhhhhcCcceeEEEEEcCC
Confidence 345567999999999998651 011134689999999876654 2334466676 4589 99999999
Q ss_pred CCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-C---CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 598 GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-G---LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 598 g~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~---~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
|+|.|....... ......+.+....+..++.. . .++..+++|+||||||.+++.++.++|++++++|+.+|..
T Consensus 96 G~G~S~~~~~~~---~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 172 (398)
T 2y6u_A 96 NHGDSAVRNRGR---LGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVV 172 (398)
T ss_dssp TSHHHHHHTTTT---BCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCC
T ss_pred CCCCCCCCCccc---cCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccc
Confidence 998775421100 00122334443333333322 1 1344459999999999999999999999999999998865
Q ss_pred Cccc--------cc-------ccc--------ccc---------cc---C-CCCCCc---cch-----------------
Q 004067 674 SWDG--------YD-------TFY--------TEK---------YM---G-LPSEDP---VGY----------------- 697 (776)
Q Consensus 674 ~~~~--------~~-------~~~--------~~~---------~~---~-~~~~~~---~~~----------------- 697 (776)
.... .. ..+ ... ++ . ...... ..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (398)
T 2y6u_A 173 ITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGP 252 (398)
T ss_dssp SCCCCCSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CC
T ss_pred ccccccccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCc
Confidence 4310 00 000 000 00 0 000000 000
Q ss_pred --------------h-----cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC
Q 004067 698 --------------E-----YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 758 (776)
Q Consensus 698 --------------~-----~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~ 758 (776)
. .......+.++++|+|+++|++|.++++..+..+.+.+ .++++++++++||.+ ..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~~~~~~~l~~~~----~~~~~~~~~~~gH~~-~~ 327 (398)
T 2y6u_A 253 VRTKMEQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTL----QNYHLDVIPGGSHLV-NV 327 (398)
T ss_dssp EEESSCHHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSCHHHHHHHHHHC----SSEEEEEETTCCTTH-HH
T ss_pred eEecCCchhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCCHHHHHHHHHhC----CCceEEEeCCCCccc-hh
Confidence 0 00122456788999999999999999998888777765 468999999999976 44
Q ss_pred CcHHHHHHHHHHHHHHh
Q 004067 759 RDRIYMEERIWEFIERT 775 (776)
Q Consensus 759 ~~~~~~~~~~~~fl~~~ 775 (776)
+..+++.+.+.+||.++
T Consensus 328 e~p~~~~~~i~~fl~~~ 344 (398)
T 2y6u_A 328 EAPDLVIERINHHIHEF 344 (398)
T ss_dssp HSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 57888999999999875
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=177.14 Aligned_cols=217 Identities=11% Similarity=0.063 Sum_probs=147.7
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
..+.. +|..+++..+.+ .|+||++||.+++.. .|..++..|...||.|+++|+||+|.+....
T Consensus 12 ~~~~~-~g~~l~~~~~g~---------~~~vv~~HG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~G~S~~~~ 74 (309)
T 3u1t_A 12 RTVEV-EGATIAYVDEGS---------GQPVLFLHGNPTSSY-------LWRNIIPYVVAAGYRAVAPDLIGMGDSAKPD 74 (309)
T ss_dssp EEEEE-TTEEEEEEEEEC---------SSEEEEECCTTCCGG-------GGTTTHHHHHHTTCEEEEECCTTSTTSCCCS
T ss_pred eEEEE-CCeEEEEEEcCC---------CCEEEEECCCcchhh-------hHHHHHHHHHhCCCEEEEEccCCCCCCCCCC
Confidence 33443 788888877642 268999999876644 2344577777889999999999999886422
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-------ccc
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-------GYD 679 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~-------~~~ 679 (776)
. ....+++.+.+..+++.. ..+++.|+||||||.+++.++.++|++++++|+.+|..... .+.
T Consensus 75 ~--------~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 144 (309)
T 3u1t_A 75 I--------EYRLQDHVAYMDGFIDAL--GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMG 144 (309)
T ss_dssp S--------CCCHHHHHHHHHHHHHHH--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGH
T ss_pred c--------ccCHHHHHHHHHHHHHHc--CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccc
Confidence 1 234566666666555543 34689999999999999999999999999999887653311 000
Q ss_pred c----c-------------------cccccc--C-C-CCCCc---cchhc------------------------------
Q 004067 680 T----F-------------------YTEKYM--G-L-PSEDP---VGYEY------------------------------ 699 (776)
Q Consensus 680 ~----~-------------------~~~~~~--~-~-~~~~~---~~~~~------------------------------ 699 (776)
. . +...++ . . ..... ..+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (309)
T 3u1t_A 145 PQLGPLFRDLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAE 224 (309)
T ss_dssp HHHHHHHHHHTSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHH
T ss_pred hhhhHHHHHHhccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhh
Confidence 0 0 000000 0 0 00000 00000
Q ss_pred -CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 700 -SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 700 -~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.+....+.++++|+|+++|++|..+++.....+.+.+ .+.++++++++||.+ ..+.++++.+.+.+||+++
T Consensus 225 ~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~ 296 (309)
T 3u1t_A 225 VLKNGEWLMASPIPKLLFHAEPGALAPKPVVDYLSENV----PNLEVRFVGAGTHFL-QEDHPHLIGQGIADWLRRN 296 (309)
T ss_dssp HHHHHHHHHHCCSCEEEEEEEECSSSCHHHHHHHHHHS----TTEEEEEEEEESSCH-HHHCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccCCCCEEEEecCCCCCCCHHHHHHHHhhC----CCCEEEEecCCcccc-hhhCHHHHHHHHHHHHHhc
Confidence 0112235678899999999999999998887887765 456788889999976 5567889999999999875
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=184.96 Aligned_cols=218 Identities=14% Similarity=0.089 Sum_probs=139.8
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc-------ccccccch----hhhHHHHhCCcEE
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC-------DSWINTVD----MRAQYLRSKGILV 591 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~-------~~~~~~~~----~~~~~l~~~G~~v 591 (776)
..+.+.+++.+|..++++++.|++. .++.|+||++||.++..... ..+...+. .+++.|+++||+|
T Consensus 86 ~~e~v~~~~~~g~~l~~~l~~P~~~---~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~~V 162 (391)
T 3g8y_A 86 ILEKWEFYPFPKSVSTFLVLKPEHL---KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVA 162 (391)
T ss_dssp EEEEEEECCSTTCCEEEEEEEETTC---CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTCEE
T ss_pred EEEEEEEEcCCCCEEEEEEEeCCCC---CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCCEE
Confidence 4577888888999999999999763 25789999999976543210 00111112 4588999999999
Q ss_pred EEECCCCCCCCchhhhh---------hhh---hccCC----ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHH
Q 004067 592 WKLDNRGTARRGLKFEA---------SIK---HNCGR----IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 655 (776)
Q Consensus 592 ~~~d~rg~g~~~~~~~~---------~~~---~~~~~----~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 655 (776)
+++|+||+|.++..... ... ...+. ....|+.++++++.+++.+|.+||+|+||||||++++.+
T Consensus 163 l~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al~~ 242 (391)
T 3g8y_A 163 VAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVL 242 (391)
T ss_dssp EECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHHHH
T ss_pred EEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHHHH
Confidence 99999999987643110 000 00111 124789999999999988999999999999999999999
Q ss_pred HhhCCCceEEEEEcCCCCCcccccccccc--cccCC--CC----CCccchhcCChhhhhccC-CCcEEEEecCCCCccCh
Q 004067 656 LARFPDVFQCAVSGAPVTSWDGYDTFYTE--KYMGL--PS----EDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHF 726 (776)
Q Consensus 656 a~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~--~~----~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~ 726 (776)
++.. ++++++|+.+++..+......... ..... +. .....+...+....+..+ ..|+|++||+.|.++
T Consensus 243 a~~~-~~i~a~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~d~~~~~~~~ap~P~LiihG~~D~~v-- 319 (391)
T 3g8y_A 243 GVLD-KDIYAFVYNDFLCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNFPDVVASLAPRPIIFTEGGLDRDF-- 319 (391)
T ss_dssp HHHC-TTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGCCTTGGGTCCHHHHHHTTTTSCEEECSCBCHHHH--
T ss_pred HHcC-CceeEEEEccCCCCcccchhhcccccccccccccccHHHhCccHHhhCCHHHHHHhhcCCCEEEEcCCccHHH--
Confidence 8864 567888888887766422111100 00000 00 001112223333444444 369999999999887
Q ss_pred HHHHHHHHHHHHCCC--CeEEEEec
Q 004067 727 RHTARLINALVAARK--PYEILIFP 749 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~--~~~~~~~~ 749 (776)
....++++ ..+. ++++..++
T Consensus 320 ~~~~~~~~---~~g~~~~~~~~~~~ 341 (391)
T 3g8y_A 320 RLVQSAYA---ASGKPENAEFHHYP 341 (391)
T ss_dssp HHHHHHHH---HTTCGGGEEECCCG
T ss_pred HHHHHHHH---HcCCCceeEEEEeC
Confidence 33344444 4443 45555544
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-16 Score=160.70 Aligned_cols=281 Identities=12% Similarity=0.127 Sum_probs=192.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+..+.+ ..|.+|++.+++....... +..++....|+|
T Consensus 26 v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~-----------------------h~~~v~~~~~~~-- 75 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSAD-----KLIKIWGAYDGKFEKTISG-----------------------HKLGISDVAWSS-- 75 (312)
T ss_dssp EEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECC-----------------------CSSCEEEEEECT--
T ss_pred EEEEEECCCCCEEEEeeCC-----CeEEEEeCCCcccchhhcc-----------------------CCCceEEEEEcC--
Confidence 5789999999999876543 3699999988876554431 124688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||+.|+.. .++.|.+||+.+++....+.... ..+....|+|+++.|+.... +.|.+||+.+++..........
T Consensus 76 -~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--- 150 (312)
T 4ery_A 76 -DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--- 150 (312)
T ss_dssp -TSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS---
T ss_pred -CCCEEEEECCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC---
Confidence 99999876 77899999999888663454433 34778899999999988775 5799999998875443222111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.+..+.|+|||+.|+....+ ..|.+||+.+
T Consensus 151 --------------~v~~~~~~~~~~~l~~~~~d------------------------------------~~i~~wd~~~ 180 (312)
T 4ery_A 151 --------------PVSAVHFNRDGSLIVSSSYD------------------------------------GLCRIWDTAS 180 (312)
T ss_dssp --------------CEEEEEECTTSSEEEEEETT------------------------------------SCEEEEETTT
T ss_pred --------------cEEEEEEcCCCCEEEEEeCC------------------------------------CcEEEEECCC
Confidence 14578899999988876643 2478999988
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-cCceeecccccccCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLD 373 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~~ 373 (776)
++...... ......+..++|+|||+.++... .+..|.+||+.+++........ ...+.. ...+
T Consensus 181 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~---- 244 (312)
T 4ery_A 181 GQCLKTLI-------DDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANF---- 244 (312)
T ss_dssp CCEEEEEC-------CSSCCCEEEEEECTTSSEEEEEE----TTTEEEEEETTTTEEEEEECSSCCSSSCC-CEEE----
T ss_pred CceeeEEe-------ccCCCceEEEEECCCCCEEEEEc----CCCeEEEEECCCCcEEEEEEecCCceEEE-EEEE----
Confidence 77544322 23445677899999999877765 3457999999988764443321 111100 0001
Q ss_pred CCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEc-cCCCceeeEEEEE
Q 004067 374 KGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGT-LDGPLESHLYCAK 446 (776)
Q Consensus 374 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~-~~~~~~~~l~~~~ 446 (776)
...++.++++...+| .|++|++.+++. ..+..+...+.... |+|++..++..+. .++ .+.+|+.+
T Consensus 245 ---~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~-~~p~~~~l~s~~~~~d~--~i~~W~~d 311 (312)
T 4ery_A 245 ---SVTGGKWIVSGSEDN--LVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDK--TIKLWKSD 311 (312)
T ss_dssp ---ECSSSCEEEECCTTS--CEEEEETTTCCEEEEECCCSSCEEEEE-ECSSSSEEEEEECTTTC--CEEEEECC
T ss_pred ---EeCCCcEEEEECCCC--EEEEEECCCchhhhhhhccCCcEEEEe-ecCcCCceEEEEccCCc--cEEEecCC
Confidence 112445666666777 899999887754 45555555566554 9999997665553 333 47888753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-16 Score=167.79 Aligned_cols=272 Identities=11% Similarity=0.026 Sum_probs=184.5
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.++.|++||+.+++....+... . .+..++|||||+.|++.. ++.|++|++.+++..+....+..
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~------------ 75 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIPVG-S-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS------------ 75 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECS-S-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS------------
T ss_pred CCCEEEEEECCCCeEEEEeecC-C-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC------------
Confidence 5688999999998877344332 2 367899999999987775 46799999999987665443321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
+..++|+|||+.|++...+. ..|++||+++++.....
T Consensus 76 ------v~~~~~spdg~~l~~~~~~~-----------------------------------~~v~v~d~~~~~~~~~~-- 112 (391)
T 1l0q_A 76 ------PQGVAVSPDGKQVYVTNMAS-----------------------------------STLSVIDTTSNTVAGTV-- 112 (391)
T ss_dssp ------EEEEEECTTSSEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEE--
T ss_pred ------ccceEECCCCCEEEEEECCC-----------------------------------CEEEEEECCCCeEEEEE--
Confidence 45788999999988765321 35899999998875542
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
.....+..++|+|||+.+++... .+..|++||+.+++............ .-.|+| ++..+
T Consensus 113 -------~~~~~~~~~~~s~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~-------dg~~l 172 (391)
T 1l0q_A 113 -------KTGKSPLGLALSPDGKKLYVTNN---GDKTVSVINTVTKAVINTVSVGRSPK---GIAVTP-------DGTKV 172 (391)
T ss_dssp -------ECSSSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECCSSEE---EEEECT-------TSSEE
T ss_pred -------eCCCCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCcEEEEEecCCCcc---eEEECC-------CCCEE
Confidence 22335678999999997766543 34479999999988766554322211 111222 23334
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
++....++ .|++||+.+++..........+..+ .|+++|+.+++....... ..++.+++. .+. ....+..
T Consensus 173 ~~~~~~~~--~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~--~~v~~~d~~-~~~----~~~~~~~ 242 (391)
T 1l0q_A 173 YVANFDSM--SISVIDTVTNSVIDTVKVEAAPSGI-AVNPEGTKAYVTNVDKYF--NTVSMIDTG-TNK----ITARIPV 242 (391)
T ss_dssp EEEETTTT--EEEEEETTTTEEEEEEECSSEEEEE-EECTTSSEEEEEEECSSC--CEEEEEETT-TTE----EEEEEEC
T ss_pred EEEeCCCC--EEEEEECCCCeEEEEEecCCCccce-EECCCCCEEEEEecCcCC--CcEEEEECC-CCe----EEEEEec
Confidence 45555566 8999999887765554444445554 499999998888752112 345556652 232 4455555
Q ss_pred CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 464 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 464 ~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
+.....+.|+|||++|++..+.. ..|+++|..+++.+..+.
T Consensus 243 ~~~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 243 GPDPAGIAVTPDGKKVYVALSFX---NTVSVIDTATNTITATMA 283 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEEE
T ss_pred CCCccEEEEccCCCEEEEEcCCC---CEEEEEECCCCcEEEEEE
Confidence 55667889999999887776543 479999998887665553
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=171.51 Aligned_cols=223 Identities=17% Similarity=0.149 Sum_probs=142.7
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+...+...+|..+++..+.+++ .|.||++||++++.. + ......+...+|.|+++|+||+|.|.
T Consensus 14 ~~~~~~~~~~g~~l~~~~~g~~~-------g~~vvllHG~~~~~~----~----~~~~~~~~~~~~~vi~~D~~G~G~S~ 78 (317)
T 1wm1_A 14 YDSGWLDTGDGHRIYWELSGNPN-------GKPAVFIHGGPGGGI----S----PHHRQLFDPERYKVLLFDQRGCGRSR 78 (317)
T ss_dssp SEEEEEECSSSCEEEEEEEECTT-------SEEEEEECCTTTCCC----C----GGGGGGSCTTTEEEEEECCTTSTTCB
T ss_pred ceeeEEEcCCCcEEEEEEcCCCC-------CCcEEEECCCCCccc----c----hhhhhhccccCCeEEEECCCCCCCCC
Confidence 34556777788888887765422 256899999765432 1 01123344579999999999999885
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc------
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------ 677 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~------ 677 (776)
... ........++.+.+..+++.. +.+++.|+||||||.+++.+|.++|++++++|+.++......
T Consensus 79 ~~~------~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 150 (317)
T 1wm1_A 79 PHA------SLDNNTTWHLVADIERLREMA--GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYY 150 (317)
T ss_dssp STT------CCTTCSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHH
T ss_pred CCc------ccccccHHHHHHHHHHHHHHc--CCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCCCchhhhhHHh
Confidence 321 011234566666666666553 345899999999999999999999999999999876432100
Q ss_pred -------cccc-------------------ccccccCC---------------------CCCCcc---------------
Q 004067 678 -------YDTF-------------------YTEKYMGL---------------------PSEDPV--------------- 695 (776)
Q Consensus 678 -------~~~~-------------------~~~~~~~~---------------------~~~~~~--------------- 695 (776)
.... +....... ......
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (317)
T 1wm1_A 151 QDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFAR 230 (317)
T ss_dssp TSSGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHH
T ss_pred hccchhhcHHHHHHHHhhccchhhcchHHHHHhhhcCCCccccccccccccccccchhhccCCcccccccccchhhhHHH
Confidence 0000 00000000 000000
Q ss_pred ---------chhc-CC-hhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHH
Q 004067 696 ---------GYEY-SS-VMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIY 763 (776)
Q Consensus 696 ---------~~~~-~~-~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 763 (776)
.+.. .. ....+.+++ +|+|+++|++|..+++..+..+.+.+ .+.++++++++||....++...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~G~~D~~~~~~~~~~l~~~~----p~~~~~~i~~~gH~~~~~~~~~~ 306 (317)
T 1wm1_A 231 IENHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAW----PEAELHIVEGAGHSYDEPGILHQ 306 (317)
T ss_dssp HHHHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHC----TTSEEEEETTCCSSTTSHHHHHH
T ss_pred hhhhhhhcccccccchhhHhhcccccCCCEEEEEecCCCCCCHHHHHHHHhhC----CCceEEEECCCCCCCCCcchHHH
Confidence 0000 11 233456675 99999999999999998888777765 45799999999998743334566
Q ss_pred HHHHHHHHHH
Q 004067 764 MEERIWEFIE 773 (776)
Q Consensus 764 ~~~~~~~fl~ 773 (776)
+...+.+|+.
T Consensus 307 ~~~~i~~f~~ 316 (317)
T 1wm1_A 307 LMIATDRFAG 316 (317)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 7777777764
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=171.57 Aligned_cols=212 Identities=12% Similarity=0.084 Sum_probs=138.7
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhcc
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 614 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~ 614 (776)
..+++....|.+ ..|.||++||.+++.. .|...+..|++.||.|+++|+||+|.|......
T Consensus 33 ~~l~y~~~G~~~------~g~~vvllHG~~~~~~-------~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~~~------ 93 (297)
T 2xt0_A 33 LRMHYVDEGPRD------AEHTFLCLHGEPSWSF-------LYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDD------ 93 (297)
T ss_dssp CCEEEEEESCTT------CSCEEEEECCTTCCGG-------GGTTTHHHHHHTTCEEEEECCTTSTTSCEESCG------
T ss_pred eEEEEEEccCCC------CCCeEEEECCCCCcce-------eHHHHHHHHHhCCcEEEEeCCCCCCCCCCCCCc------
Confidence 789888876532 1368999999876543 345567889999999999999999998643110
Q ss_pred CCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc--------cccc----
Q 004067 615 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--------DTFY---- 682 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~--------~~~~---- 682 (776)
..+.++++.+.+..+++.- +.+++.|+||||||.+++.+|.++|++++++|+.++....... ....
T Consensus 94 ~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (297)
T 2xt0_A 94 AVYTFGFHRRSLLAFLDAL--QLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFESWRDFVANSP 171 (297)
T ss_dssp GGCCHHHHHHHHHHHHHHH--TCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHHHHHHHHHTCT
T ss_pred ccCCHHHHHHHHHHHHHHh--CCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHHHHHHHhhccc
Confidence 0123445554444444432 3468999999999999999999999999999998764311000 0000
Q ss_pred --------c-----------ccccCCCCCCc------cchhcC--------------Chhhhhc-cCCCcEEEEecCCCC
Q 004067 683 --------T-----------EKYMGLPSEDP------VGYEYS--------------SVMHHVH-KMKGKLLLVHGMIDE 722 (776)
Q Consensus 683 --------~-----------~~~~~~~~~~~------~~~~~~--------------~~~~~~~-~i~~P~lii~G~~D~ 722 (776)
. ..+.. +.... ..+... .....+. ++++|+|+++|++|.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~~D~ 250 (297)
T 2xt0_A 172 DLDVGKLMQRAIPGITDAEVAAYDA-PFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPTFMAVGAQDP 250 (297)
T ss_dssp TCCHHHHHHHHSTTCCHHHHHHHHT-TCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCEEEEEETTCS
T ss_pred ccchhHHHhccCccCCHHHHHHHhc-cccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCeEEEEeCCCc
Confidence 0 00000 00000 000000 0112456 899999999999999
Q ss_pred ccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 723 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 723 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.++ .....+.+.+. +.....+.++++||.. .. .++++.+.+.+||.
T Consensus 251 ~~~-~~~~~~~~~~p--~~~~~~~~~~~~GH~~-~~-~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 251 VLG-PEVMGMLRQAI--RGCPEPMIVEAGGHFV-QE-HGEPIARAALAAFG 296 (297)
T ss_dssp SSS-HHHHHHHHHHS--TTCCCCEEETTCCSSG-GG-GCHHHHHHHHHHTT
T ss_pred ccC-hHHHHHHHhCC--CCeeEEeccCCCCcCc-cc-CHHHHHHHHHHHHh
Confidence 998 77777777662 2333444578999987 45 88899999999985
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-18 Score=172.30 Aligned_cols=204 Identities=14% Similarity=0.035 Sum_probs=139.0
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
...|+||++||.+++.. .|..++..|+++||.|+++|+||+|.|...... ...++++.+.+..+++
T Consensus 10 ~~~~~vvllHG~~~~~~-------~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~-------~~~~~~~~~~~~~~l~ 75 (267)
T 3sty_A 10 FVKKHFVLVHAAFHGAW-------CWYKIVALMRSSGHNVTALDLGASGINPKQALQ-------IPNFSDYLSPLMEFMA 75 (267)
T ss_dssp CCCCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTCSCCGGG-------CCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCcc-------hHHHHHHHHHhcCCeEEEeccccCCCCCCcCCc-------cCCHHHHHHHHHHHHH
Confidence 35689999999876644 345668889999999999999999988754211 1235566666655555
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc------------ccc-ccccc---CC--C---
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------------TFY-TEKYM---GL--P--- 690 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------------~~~-~~~~~---~~--~--- 690 (776)
... +.+++.|+||||||.+++.++.++|++++++|+.++........ ..+ ...+. .. +
T Consensus 76 ~l~-~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (267)
T 3sty_A 76 SLP-ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTT 154 (267)
T ss_dssp TSC-TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCE
T ss_pred hcC-CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccch
Confidence 431 35799999999999999999999999999999888754321100 000 00000 00 0
Q ss_pred --------------CCCccc------------------hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 691 --------------SEDPVG------------------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 691 --------------~~~~~~------------------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
...... +............++|+|+++|++|..+++.....+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-- 232 (267)
T 3sty_A 155 LIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKN-- 232 (267)
T ss_dssp EECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHS--
T ss_pred hhhhHHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccCHHHHHHHHHhC--
Confidence 000000 0000111111122479999999999999988887777765
Q ss_pred CCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 739 ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 739 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.++++++++++||.+ ..+.++++.+.+.+|++++
T Consensus 233 --~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 233 --PPDEVKEIEGSDHVT-MMSKPQQLFTTLLSIANKY 266 (267)
T ss_dssp --CCSEEEECTTCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred --CCceEEEeCCCCccc-cccChHHHHHHHHHHHHhc
Confidence 457999999999986 5567899999999999875
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=172.82 Aligned_cols=210 Identities=14% Similarity=0.118 Sum_probs=139.4
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|..+++..+. + . |.||++||.+++.. .|...+..|+++||.|+++|+||+|.|.....
T Consensus 10 ~~g~~l~y~~~g--~------~-~pvvllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~~---- 69 (279)
T 1hkh_A 10 STPIELYYEDQG--S------G-QPVVLIHGYPLDGH-------SWERQTRELLAQGYRVITYDRRGFGGSSKVNT---- 69 (279)
T ss_dssp TEEEEEEEEEES--S------S-EEEEEECCTTCCGG-------GGHHHHHHHHHTTEEEEEECCTTSTTSCCCSS----
T ss_pred CCCeEEEEEecC--C------C-CcEEEEcCCCchhh-------HHhhhHHHHHhCCcEEEEeCCCCCCCCCCCCC----
Confidence 466777766553 1 1 45899999876543 34556788999999999999999998864321
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-ceEEEEEcCCCCCccccc---------cc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDGYD---------TF 681 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~~v~~~~~~~~~~~~---------~~ 681 (776)
....+++.+.+..+++.. +.+++.++||||||.+++.+|.++|+ +++++|+.++........ ..
T Consensus 70 ----~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 143 (279)
T 1hkh_A 70 ----GYDYDTFAADLHTVLETL--DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEV 143 (279)
T ss_dssp ----CCSHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHH
T ss_pred ----CCCHHHHHHHHHHHHHhc--CCCceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHH
Confidence 122444444444343332 34689999999999999999999998 999999988753311000 00
Q ss_pred ---------------c---cccccCC----C-CCCcc----------------------chhcCChhhhhccC---CCcE
Q 004067 682 ---------------Y---TEKYMGL----P-SEDPV----------------------GYEYSSVMHHVHKM---KGKL 713 (776)
Q Consensus 682 ---------------~---~~~~~~~----~-~~~~~----------------------~~~~~~~~~~~~~i---~~P~ 713 (776)
+ ...+... . ..... .+ ..+....+.++ ++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~i~~~~~P~ 222 (279)
T 1hkh_A 144 FDGIEAAAKGDRFAWFTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAW-IEDFRSDVEAVRAAGKPT 222 (279)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHH-TCBCHHHHHHHHHHCCCE
T ss_pred HHHHHHHhhhhhhhhHHHHHhhhhhcccCCcccccHHHHHhhhhhhccCcHHHHHHHHHHH-hhchhhhHHHhccCCCCE
Confidence 0 0000000 0 00000 00 11222345677 8999
Q ss_pred EEEecCCCCccChHHH-HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 714 LLVHGMIDENVHFRHT-ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 714 lii~G~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
|+++|++|..+|+..+ ..+.+.+ .+.+++++++++|.+ ..+.++++.+.+.+||.
T Consensus 223 lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 223 LILHGTKDNILPIDATARRFHQAV----PEADYVEVEGAPHGL-LWTHADEVNAALKTFLA 278 (279)
T ss_dssp EEEEETTCSSSCTTTTHHHHHHHC----TTSEEEEETTCCTTH-HHHTHHHHHHHHHHHHH
T ss_pred EEEEcCCCccCChHHHHHHHHHhC----CCeeEEEeCCCCccc-hhcCHHHHHHHHHHHhh
Confidence 9999999999998876 6665554 567999999999987 45678899999999986
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-16 Score=169.42 Aligned_cols=344 Identities=10% Similarity=-0.021 Sum_probs=208.4
Q ss_pred CCceeEcCCCC-EEEEEeCCCCcCcceEEEEec----CCCc------eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 004067 57 PTSIGFSPDDN-LITYLLSPDHSLSRKVFSFDP----KTCK------QELVFSPPDGGLDENNISPEEKLRRERLRERGL 125 (776)
Q Consensus 57 ~~~~~~SpDG~-~ia~~~~~~~~~~~~l~~~~~----~~~~------~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 125 (776)
+..++|||||+ +|+..+. ...|.+|++ .+++ ......+...+ ... ...+..
T Consensus 48 v~~~~~s~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---------~~~~~~ 109 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEK-----NSVARLARIVETDQEGKKYWKLTIIAELRHPFAL----SAS---------SGKTTN 109 (425)
T ss_dssp CSEEEECSSCTTEEEEEET-----BTEEEEEEEEEC------CEEEEEEEEEECCCCC----C---------------CB
T ss_pred eEEEEECCCCCcEEEEecC-----CceEEEEEEecccCCccccccccccccccccccc----ccc---------ccCCCC
Confidence 48999999999 8886654 246999999 8777 33322221100 000 001123
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR 203 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~ 203 (776)
.+....|+| ||+.|+.. .++.|++||..+.... .+..... .+..+.|+|||+.|+.... +.|.+|++.+++..
T Consensus 110 ~v~~~~~s~---~~~~l~~~~~dg~i~i~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 110 QVTCLAWSH---DGNSIVTGVENGELRLWNKTGALLN-VLNFHRA-PIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp CEEEEEECT---TSSEEEEEETTSCEEEEETTSCEEE-EECCCCS-CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred ceEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCeee-eccCCCc-cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 688999999 99999987 6788999996655555 6654443 4888999999999988875 67999999988765
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
............. ...........+..+.|+|++. ++....+
T Consensus 185 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------------------- 226 (425)
T 1r5m_A 185 QHFELKETGGSSI--NAENHSGDGSLGVDVEWVDDDK-FVIPGPK----------------------------------- 226 (425)
T ss_dssp EEECCC-----------------CCCBSCCEEEETTE-EEEECGG-----------------------------------
T ss_pred EEeeccccCccce--eeccccCCcceeeEEEEcCCCE-EEEEcCC-----------------------------------
Confidence 5433222100000 0000000011144677888865 4444322
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCce
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSW 362 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~ 362 (776)
..|++||+.+++..... ..+...+..++|+||++.++... .+..|.+||+.+++...... +.....
T Consensus 227 -g~i~~~d~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 227 -GAIFVYQITEKTPTGKL--------IGHHGPISVLEFNDTNKLLLSAS----DDGTLRIWHGGNGNSQNCFYGHSQSIV 293 (425)
T ss_dssp -GCEEEEETTCSSCSEEE--------CCCSSCEEEEEEETTTTEEEEEE----TTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred -CeEEEEEcCCCceeeee--------ccCCCceEEEEECCCCCEEEEEc----CCCEEEEEECCCCccceEecCCCccEE
Confidence 34799999887654331 34566789999999999777665 34469999998876544333 222211
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
. +.+.+++++++...+| .|++|++..++.. .+..+...+..+. |+++|+.|+..+. ++ .+.
T Consensus 294 ~------------~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~-~s~~~~~l~~~~~-dg--~i~ 355 (425)
T 1r5m_A 294 S------------ASWVGDDKVISCSMDG--SVRLWSLKQNTLLALSIVDGVPIFAGR-ISQDGQKYAVAFM-DG--QVN 355 (425)
T ss_dssp E------------EEEETTTEEEEEETTS--EEEEEETTTTEEEEEEECTTCCEEEEE-ECTTSSEEEEEET-TS--CEE
T ss_pred E------------EEECCCCEEEEEeCCC--cEEEEECCCCcEeEecccCCccEEEEE-EcCCCCEEEEEEC-CC--eEE
Confidence 1 1222333666666667 8999998776543 4444455566554 9999997666554 33 377
Q ss_pred EEEEEeCCCCCC---------------ccccceeecCC--C-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 442 LYCAKLYPDWNH---------------TLEAPVKLTNG--K-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 442 l~~~~~~~~g~~---------------~~~~~~~l~~~--~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
+|.+.. .... .......+..+ . .+..+.|+|||+.|+..... ..|.+|++.
T Consensus 356 i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKK--LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL----QEGSVVAIP 424 (425)
T ss_dssp EEECHH--HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS----SCCEEEECC
T ss_pred EEECCC--CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC----ceEEEEeec
Confidence 877763 1100 00023444444 3 57788999999988766543 347777763
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-16 Score=164.14 Aligned_cols=243 Identities=12% Similarity=-0.025 Sum_probs=164.1
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecC---CCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLS---SSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~---~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g 200 (776)
.++.+..|+| |++.+.-..++.|.+||+.+++....+. .+....+..++|||||+.|+..+. +.|.+||+.++
T Consensus 83 ~~v~~~~~s~---d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 83 AGVADLTWVG---ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp SCEEEEEEET---TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCEEEEEEeC---CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 3688999999 9887767789999999999887652221 122234788999999999998875 56999999998
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+..+....... .+..+.|+||++.++.....+
T Consensus 160 ~~~~~~~~h~~-----------------~V~~~~~~~~~~~~l~s~s~D------------------------------- 191 (344)
T 4gqb_B 160 VVLSSYRAHAA-----------------QVTCVAASPHKDSVFLSCSED------------------------------- 191 (344)
T ss_dssp EEEEEECCCSS-----------------CEEEEEECSSCTTEEEEEETT-------------------------------
T ss_pred cEEEEEcCcCC-----------------ceEEEEecCCCCCceeeeccc-------------------------------
Confidence 76543322211 145788999997665433221
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceE-EEEEec
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEE 358 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~ 358 (776)
..|.+||+.+++....-.. ..+...+..+.|+|++. +++..+ .+..|.+||+.+++.. .+..+.
T Consensus 192 ----~~v~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~~~l~sg~----~dg~v~~wd~~~~~~~~~~~~h~ 257 (344)
T 4gqb_B 192 ----NRILLWDTRCPKPASQIGC------SAPGYLPTSLAWHPQQSEVFVFGD----ENGTVSLVDTKSTSCVLSSAVHS 257 (344)
T ss_dssp ----SCEEEEETTSSSCEEECC----------CCCEEEEEECSSCTTEEEEEE----TTSEEEEEESCC--CCEEEECCS
T ss_pred ----cccccccccccceeeeeec------ceeeccceeeeecCCCCcceEEec----cCCcEEEEECCCCcEEEEEcCCC
Confidence 2378999998875443111 23344578899999765 555544 3557999999988754 343333
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
...... .|+| ++..++++...++ .|++||+.+++...+..+...|..+. |+|+|+.++++...++.
T Consensus 258 ~~v~~v---~fsp-------~g~~~lasgs~D~--~i~vwd~~~~~~~~~~~H~~~V~~v~-~sp~~~~llas~s~D~~- 323 (344)
T 4gqb_B 258 QCVTGL---VFSP-------HSVPFLASLSEDC--SLAVLDSSLSELFRSQAHRDFVRDAT-WSPLNHSLLTTVGWDHQ- 323 (344)
T ss_dssp SCEEEE---EECS-------SSSCCEEEEETTS--CEEEECTTCCEEEEECCCSSCEEEEE-ECSSSTTEEEEEETTSC-
T ss_pred CCEEEE---EEcc-------CCCeEEEEEeCCC--eEEEEECCCCcEEEEcCCCCCEEEEE-EeCCCCeEEEEEcCCCe-
Confidence 332221 2333 2334666666677 89999999998877777777777765 99999988888777764
Q ss_pred eeeEEEEEe
Q 004067 439 ESHLYCAKL 447 (776)
Q Consensus 439 ~~~l~~~~~ 447 (776)
+.+|.++.
T Consensus 324 -v~~w~v~~ 331 (344)
T 4gqb_B 324 -VVHHVVPT 331 (344)
T ss_dssp -EEEEECCC
T ss_pred -EEEEECCC
Confidence 78887764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-16 Score=163.47 Aligned_cols=278 Identities=13% Similarity=0.086 Sum_probs=186.7
Q ss_pred CCceeEcCC----CCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPD----DNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpD----G~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+..++|+|+ |+.|+-.+. ...|.+|++.+++........ .+..++....|
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs~-----D~~v~vW~~~~~~~~~~~~l~---------------------gh~~~v~~~~~ 88 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGSL-----DDLVKVWKWRDERLDLQWSLE---------------------GHQLGVVSVDI 88 (321)
T ss_dssp EEEEEEC-------CEEEEEET-----TSCEEEEEEETTEEEEEEEEC---------------------CCSSCEEEEEE
T ss_pred EEEEEEecCCCCCCCEEEEEcC-----CCCEEEEECCCCCeeeeeeec---------------------cCCCCEEEEEE
Confidence 578999986 567775443 246889998877643321110 11247889999
Q ss_pred eecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCC
Q 004067 133 VKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 133 sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~ 210 (776)
+| ++..++.. .++.|.+||+.+++....+..... .+..+.|||||+.|+.... +.+.++++.+++.........
T Consensus 89 ~~---~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 89 SH---TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp CS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred CC---CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence 99 99988876 788999999999877634544433 4778999999999988764 579999999887654332221
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
. .+..++|+|||+.|+....+ ..|.+|
T Consensus 165 ~-----------------~v~~~~~spdg~~lasg~~d------------------------------------g~i~iw 191 (321)
T 3ow8_A 165 K-----------------FILSIAYSPDGKYLASGAID------------------------------------GIINIF 191 (321)
T ss_dssp S-----------------CEEEEEECTTSSEEEEEETT------------------------------------SCEEEE
T ss_pred c-----------------eEEEEEECCCCCEEEEEcCC------------------------------------CeEEEE
Confidence 1 14478899999999877643 237999
Q ss_pred EcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCceeeccccc
Q 004067 291 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCF 369 (776)
Q Consensus 291 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~ 369 (776)
|+.+++....- ..+...+..++|+|||+.|+..+ .+..|.+||+.++....... +...... -.|
T Consensus 192 d~~~~~~~~~~--------~~h~~~v~~l~~spd~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~h~~~v~~---~~~ 256 (321)
T 3ow8_A 192 DIATGKLLHTL--------EGHAMPIRSLTFSPDSQLLVTAS----DDGYIKIYDVQHANLAGTLSGHASWVLN---VAF 256 (321)
T ss_dssp ETTTTEEEEEE--------CCCSSCCCEEEECTTSCEEEEEC----TTSCEEEEETTTCCEEEEECCCSSCEEE---EEE
T ss_pred ECCCCcEEEEE--------cccCCceeEEEEcCCCCEEEEEc----CCCeEEEEECCCcceeEEEcCCCCceEE---EEE
Confidence 99988754431 34566788899999999877665 34569999998877644332 2222111 123
Q ss_pred ccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 370 TPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+| ++.+++++..+| .|.+||+.+++ ...+..+...+..+. |+++|+.|+.. ..++. +.+|..+
T Consensus 257 sp--------~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~h~~~v~~v~-~s~~g~~l~s~-~~d~~--i~vwd~p 320 (321)
T 3ow8_A 257 CP--------DDTHFVSSSSDK--SVKVWDVGTRTCVHTFFDHQDQVWGVK-YNGNGSKIVSV-GDDQE--IHIYDCP 320 (321)
T ss_dssp CT--------TSSEEEEEETTS--CEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEE-ETTCC--EEEEECC
T ss_pred CC--------CCCEEEEEeCCC--cEEEEeCCCCEEEEEEcCCCCcEEEEE-ECCCCCEEEEE-eCCCe--EEEEeCC
Confidence 33 234566666677 89999987765 445555666676665 99999976544 44443 7888753
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-19 Score=176.93 Aligned_cols=205 Identities=11% Similarity=0.059 Sum_probs=139.6
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|+||++||.+++.. .|..++..|++ ||.|+++|+||+|.+....... ......+++.+.+..+++.
T Consensus 19 ~~p~vv~~HG~~~~~~-------~~~~~~~~l~~-g~~v~~~D~~G~G~S~~~~~~~----~~~~~~~~~~~~~~~~~~~ 86 (269)
T 4dnp_A 19 GERVLVLAHGFGTDQS-------AWNRILPFFLR-DYRVVLYDLVCAGSVNPDFFDF----RRYTTLDPYVDDLLHILDA 86 (269)
T ss_dssp CSSEEEEECCTTCCGG-------GGTTTGGGGTT-TCEEEEECCTTSTTSCGGGCCT----TTCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcHH-------HHHHHHHHHhC-CcEEEEEcCCCCCCCCCCCCCc----cccCcHHHHHHHHHHHHHh
Confidence 3489999999876643 23345677777 9999999999999885421111 1112355666666666554
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc--------------------------ccccc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF--------------------------YTEKY 686 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~--------------------------~~~~~ 686 (776)
. +.+++.|+||||||.+++.++.++|++++++++.+|...+...... +....
T Consensus 87 ~--~~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (269)
T 4dnp_A 87 L--GIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLA 164 (269)
T ss_dssp T--TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred c--CCCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhh
Confidence 3 4458999999999999999999999999999999886542110000 00000
Q ss_pred cCCCCC-------------Cc-------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEE
Q 004067 687 MGLPSE-------------DP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 746 (776)
Q Consensus 687 ~~~~~~-------------~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 746 (776)
...... .. ..+...+....+.++++|+|+++|++|..+++..+..+.+.+ ...++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~ 241 (269)
T 4dnp_A 165 VGADVPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHL---GGKNTVH 241 (269)
T ss_dssp HCSSCHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBCHHHHHHHHHHS---SSCEEEE
T ss_pred ccCCChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccCHHHHHHHHHhC---CCCceEE
Confidence 000000 00 001122334557788999999999999999999888888776 2238999
Q ss_pred EecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 747 IFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 747 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++++++|.. ..+.++++.+.+.+||+++
T Consensus 242 ~~~~~gH~~-~~~~p~~~~~~i~~fl~~~ 269 (269)
T 4dnp_A 242 WLNIEGHLP-HLSAPTLLAQELRRALSHR 269 (269)
T ss_dssp EEEEESSCH-HHHCHHHHHHHHHHHHC--
T ss_pred EeCCCCCCc-cccCHHHHHHHHHHHHhhC
Confidence 999999986 4567888999999999763
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=169.60 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=141.3
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCC-CcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 530 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGP-CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 530 ~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~-~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
...+|..+++....+. ..|+||++||.+ +... .. .|...+..|++. |.|+++|+||+|.|.....
T Consensus 12 ~~~~g~~l~y~~~g~~-------g~p~vvllHG~~~~~~~-~~----~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~~- 77 (285)
T 1c4x_A 12 FPSGTLASHALVAGDP-------QSPAVVLLHGAGPGAHA-AS----NWRPIIPDLAEN-FFVVAPDLIGFGQSEYPET- 77 (285)
T ss_dssp ECCTTSCEEEEEESCT-------TSCEEEEECCCSTTCCH-HH----HHGGGHHHHHTT-SEEEEECCTTSTTSCCCSS-
T ss_pred EEECCEEEEEEecCCC-------CCCEEEEEeCCCCCCcc-hh----hHHHHHHHHhhC-cEEEEecCCCCCCCCCCCC-
Confidence 3347777888766431 126799999964 2111 11 234446677665 9999999999998864211
Q ss_pred hhhhccCCccHHHH----HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc------
Q 004067 609 SIKHNCGRIDAEDQ----LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY------ 678 (776)
Q Consensus 609 ~~~~~~~~~~~~D~----~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------ 678 (776)
....++++ .+.+..+++.. +.+++.|+||||||.+++.+|.++|++++++|+.+|.......
T Consensus 78 ------~~~~~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 149 (285)
T 1c4x_A 78 ------YPGHIMSWVGMRVEQILGLMNHF--GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELA 149 (285)
T ss_dssp ------CCSSHHHHHHHHHHHHHHHHHHH--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHH
T ss_pred ------cccchhhhhhhHHHHHHHHHHHh--CCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHH
Confidence 01234444 44444444432 3368999999999999999999999999999998875421000
Q ss_pred --cccc-----------cccccCCCCCC--c-c----ch---------h---------------cCChhhhhccCCCcEE
Q 004067 679 --DTFY-----------TEKYMGLPSED--P-V----GY---------E---------------YSSVMHHVHKMKGKLL 714 (776)
Q Consensus 679 --~~~~-----------~~~~~~~~~~~--~-~----~~---------~---------------~~~~~~~~~~i~~P~l 714 (776)
...+ ...+...+... . . .+ . .......+.++++|+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 229 (285)
T 1c4x_A 150 RLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVL 229 (285)
T ss_dssp HHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEE
T ss_pred HHHHHhccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEE
Confidence 0000 00000011000 0 0 00 0 0012234678889999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++|++|..+|+..+..+.+.+ .+.++++++++||.+ ..+.++++.+.+.+||.+
T Consensus 230 ii~G~~D~~~p~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 230 VFHGRQDRIVPLDTSLYLTKHL----KHAELVVLDRCGHWA-QLERWDAMGPMLMEHFRA 284 (285)
T ss_dssp EEEETTCSSSCTHHHHHHHHHC----SSEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHC
T ss_pred EEEeCCCeeeCHHHHHHHHHhC----CCceEEEeCCCCcch-hhcCHHHHHHHHHHHHhc
Confidence 9999999999999888777754 568999999999976 456788899999999975
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-18 Score=188.84 Aligned_cols=235 Identities=17% Similarity=0.179 Sum_probs=165.9
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhh-HHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rg~g~ 601 (776)
..+.+.|++.||..|.+.+|.|+.. +++|+||++||......... .+...+ +.|+++||+|+.+|+||+|+
T Consensus 8 ~~~~v~i~~~DG~~L~~~~~~P~~~----~~~P~vv~~~~~g~~~~~~~----~y~~~~~~~la~~Gy~vv~~D~RG~G~ 79 (587)
T 3i2k_A 8 VASNVMVPMRDGVRLAVDLYRPDAD----GPVPVLLVRNPYDKFDVFAW----STQSTNWLEFVRDGYAVVIQDTRGLFA 79 (587)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECCS----SCEEEEEEEESSCTTCHHHH----HTTTCCTHHHHHTTCEEEEEECTTSTT
T ss_pred EEEEEEEECCCCCEEEEEEEECCCC----CCeeEEEEECCcCCCccccc----cchhhHHHHHHHCCCEEEEEcCCCCCC
Confidence 4567899999999999999999763 57899999998544322110 111124 78999999999999999999
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC-CCccc---
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV-TSWDG--- 677 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~-~~~~~--- 677 (776)
|+..+.. + ..+.+|+.++++++.++++.+ .+|+++|+||||++++.+++.+++.++++|+.++. .++..
T Consensus 80 S~g~~~~-----~-~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~ 152 (587)
T 3i2k_A 80 SEGEFVP-----H-VDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWY 152 (587)
T ss_dssp CCSCCCT-----T-TTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCS
T ss_pred CCCcccc-----c-cchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccccccee
Confidence 9765432 1 246899999999999887655 79999999999999999999999999999999887 65321
Q ss_pred c-ccc--------ccc--------------------------------ccc-CCCC---------------------CCc
Q 004067 678 Y-DTF--------YTE--------------------------------KYM-GLPS---------------------EDP 694 (776)
Q Consensus 678 ~-~~~--------~~~--------------------------------~~~-~~~~---------------------~~~ 694 (776)
+ ... |.. .++ ..+. ...
T Consensus 153 ~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (587)
T 3i2k_A 153 GPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDND 232 (587)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCCSCC
T ss_pred ecCCccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCCCCC
Confidence 0 000 000 000 0010 012
Q ss_pred cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC---------CCCcHH---
Q 004067 695 VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR---------RHRDRI--- 762 (776)
Q Consensus 695 ~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~---------~~~~~~--- 762 (776)
..|...++...+.+|++|+|+++|..|..+ ..+.++++++...++ ..+++-|. .|... .+....
T Consensus 233 ~yw~~~s~~~~l~~I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~~~~~~~~ 308 (587)
T 3i2k_A 233 ESWQSISLFERLGGLATPALITAGWYDGFV--GESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGIAATYPIQ 308 (587)
T ss_dssp HHHHTTCCHHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCGGGSCCHH
T ss_pred hHHhcCChhhhhccCCCCEEEEccCCCccc--hHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCCccccccc
Confidence 335556677788999999999999999764 356788898876554 35666554 46421 111112
Q ss_pred HHHHHHHHHHHHhC
Q 004067 763 YMEERIWEFIERTL 776 (776)
Q Consensus 763 ~~~~~~~~fl~~~l 776 (776)
+..+.+.+||++||
T Consensus 309 ~~~~~~~~wFD~~L 322 (587)
T 3i2k_A 309 EATTMHKAFFDRHL 322 (587)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHh
Confidence 33488999999886
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=167.77 Aligned_cols=291 Identities=11% Similarity=-0.009 Sum_probs=181.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCc-CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHS-LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++|||||++||-.+..... ....|++|+..++......... ...+..++....|+|
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-------------------~~~~~~~V~~~~~s~- 104 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-------------------GVQTEAGVTDVAWVS- 104 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-------------------EEECSSCEEEEEEET-
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-------------------cCCCCCCEEEEEEcC-
Confidence 4789999999999977653211 1357999998776542111000 001124688999999
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCccceecC---CCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCC
Q 004067 136 SSKKKIIMVPLPDGIYFQDLSCSKPELKLS---SSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~---~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
|++.|+-..++.|.+||+.+++...... ......+..++|||||+.|+.... +.|.+||+.+++..........
T Consensus 105 --d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~ 182 (357)
T 4g56_B 105 --EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS 182 (357)
T ss_dssp --TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred --CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC
Confidence 9998888899999999999887541111 112234788999999999988775 5799999999876554332211
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
.+..++|+|+++.++...... ..|.+||
T Consensus 183 -----------------~v~~v~~s~~~~~~~~s~~~d-----------------------------------g~v~~wd 210 (357)
T 4g56_B 183 -----------------EVNCVAACPGKDTIFLSCGED-----------------------------------GRILLWD 210 (357)
T ss_dssp -----------------CEEEEEECTTCSSCEEEEETT-----------------------------------SCEEECC
T ss_pred -----------------CEEEEEEccCCCceeeeeccC-----------------------------------CceEEEE
Confidence 145788999997554433221 2378899
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEE-eccCceeeccccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCF 369 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~ 369 (776)
+.+++...... .......+..++|+|++. +++... .+..|.+||+.+++...... +....... .|
T Consensus 211 ~~~~~~~~~~~------~~~~~~~v~~v~~sp~~~~~la~g~----~d~~i~~wd~~~~~~~~~~~~~~~~v~~l---~~ 277 (357)
T 4g56_B 211 TRKPKPATRID------FCASDTIPTSVTWHPEKDDTFACGD----ETGNVSLVNIKNPDSAQTSAVHSQNITGL---AY 277 (357)
T ss_dssp TTSSSCBCBCC------CTTCCSCEEEEEECTTSTTEEEEEE----SSSCEEEEESSCGGGCEEECCCSSCEEEE---EE
T ss_pred CCCCceeeeee------eccccccccchhhhhcccceEEEee----cccceeEEECCCCcEeEEEeccceeEEEE---EE
Confidence 98876543211 134456688999999865 555444 34459999998887544332 22222211 23
Q ss_pred ccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC-CCcEEEEEEccCCCceeeEEEEEe
Q 004067 370 TPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE-ASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~-dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+| +++.++++...+| .|++||+++++..+...+...|..+. |+| |++. +++...++. +.+|.++.
T Consensus 278 sp-------~~~~~lasgs~D~--~i~iwd~~~~~~~~~~~H~~~V~~va-fsP~d~~~-l~s~s~Dg~--v~iW~~~~ 343 (357)
T 4g56_B 278 SY-------HSSPFLASISEDC--TVAVLDADFSEVFRDLSHRDFVTGVA-WSPLDHSK-FTTVGWDHK--VLHHHLPS 343 (357)
T ss_dssp CS-------SSSCCEEEEETTS--CEEEECTTSCEEEEECCCSSCEEEEE-ECSSSTTE-EEEEETTSC--EEEEECC-
T ss_pred cC-------CCCCEEEEEeCCC--EEEEEECCCCcEeEECCCCCCEEEEE-EeCCCCCE-EEEEcCCCe--EEEEECCC
Confidence 33 2334666666677 89999999888776666666677765 998 6775 455555544 78888764
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=170.50 Aligned_cols=241 Identities=12% Similarity=0.052 Sum_probs=155.8
Q ss_pred CCceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 522 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 522 ~~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
.+.+.+++.++ .+..+.++ +.|.. +++|+|+++||+++... ...|... ..+.+.+++.||+|+++|.+++.
T Consensus 7 ~~v~~~~~~S~~~~~~i~v~-~~p~~-----~~~p~vvllHG~~~~~~-~~~w~~~-~~~~~~~~~~~~~vv~p~~~~~~ 78 (304)
T 1sfr_A 7 LPVEYLQVPSPSMGRDIKVQ-FQSGG-----ANSPALYLLDGLRAQDD-FSGWDIN-TPAFEWYDQSGLSVVMPVGGQSS 78 (304)
T ss_dssp CCCEEEEEEETTTTEEEEEE-EECCS-----TTBCEEEEECCTTCCSS-SCHHHHH-CCHHHHHTTSSCEEEEECCCTTC
T ss_pred ceEEEEEEECccCCCceEEE-ECCCC-----CCCCEEEEeCCCCCCCC-cchhhcC-CCHHHHHhcCCeEEEEECCCCCc
Confidence 35677888876 46677777 54543 47899999999742111 1123211 11246677889999999998653
Q ss_pred CCchhhhhh--hhhccCCccHHHH--HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 601 RRGLKFEAS--IKHNCGRIDAEDQ--LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 601 ~~~~~~~~~--~~~~~~~~~~~D~--~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
.+.. +... ...........++ .+.+.++.++..++.++++|+|+||||++|+.++.++|++|+++++++|..++.
T Consensus 79 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~ 157 (304)
T 1sfr_A 79 FYSD-WYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPS 157 (304)
T ss_dssp TTCB-CSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTT
T ss_pred cccc-cCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcc
Confidence 3211 1000 0000001223333 234444544344677799999999999999999999999999999999987654
Q ss_pred ccc--cc----------c-cccccCCCCCCccchhcCChhhhhccC---CCcEEEEecCCCC--------------ccCh
Q 004067 677 GYD--TF----------Y-TEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDE--------------NVHF 726 (776)
Q Consensus 677 ~~~--~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~--------------~v~~ 726 (776)
... .. + ....++.+. ...+...++...+.++ ..|+++++|+.|. .++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~ 235 (304)
T 1sfr_A 158 QAMGPTLIGLAMGDAGGYKASDMWGPKE--DPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVR 235 (304)
T ss_dssp STTHHHHHHHHHHHTTSCCHHHHHCSTT--STHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHH
T ss_pred ccchhhhhhHhhhhccccchHHhcCCcc--hhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHHH
Confidence 310 00 0 011112221 2345555665555554 5799999999998 6678
Q ss_pred HHHHHHHHHHHHCC-CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 727 RHTARLINALVAAR-KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 727 ~~~~~~~~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
..+.++++.|++.| .++++.+|++++|.+. .....+..++.||.++|
T Consensus 236 ~~~~~~~~~L~~~G~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l 283 (304)
T 1sfr_A 236 TSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRAL 283 (304)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhc
Confidence 89999999999999 9999999987799652 24455677788887653
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-17 Score=163.63 Aligned_cols=255 Identities=11% Similarity=0.149 Sum_probs=189.8
Q ss_pred eEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
-|++||++|+|....+ ...||+++.++.+.++|+. ...-.+++ +|+
T Consensus 20 ~~~~~g~~iy~~n~~d---~~~ly~~~~dg~~~~~l~~----------------------------~~~~~i~~---~g~ 65 (302)
T 3s25_A 20 LFCESDGEVFFSNTND---NGRLYAMNIDGSNIHKLSN----------------------------DTAMYINA---DKN 65 (302)
T ss_dssp CEEEETTEEEEEEGGG---TTEEEEEETTSCSCEEEEE----------------------------EEEEEEEE---CSS
T ss_pred EEEEeCCEEEEEeCCC---CceEEEEcCCCCCCEEccC----------------------------CceeeEEE---cCC
Confidence 4799999999987643 2589999999999999985 22345788 999
Q ss_pred EEEEeC---------------CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE---C--CcEEEEecCCC
Q 004067 141 IIMVPL---------------PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR---D--CELHVLNLLIN 200 (776)
Q Consensus 141 ~l~~~~---------------~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~---~--~~l~~~~l~~g 200 (776)
+|+|.. ...||++++++++.+ +|+.... ..|+|+|++|+|+. . ..||++++++.
T Consensus 66 ~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~~~~-----~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs 139 (302)
T 3s25_A 66 YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDPDPC-----IYASLIGNYIYYLHYDTQTATSLYRIRIDGE 139 (302)
T ss_dssp EEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEECSCE-----EEEEEETTEEEEEEESSSSCEEEEEEETTSC
T ss_pred EEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-EeecCCc-----cEEEEeCCEEEEEeecCCCCceEEEEECCCC
Confidence 999983 246999999999987 7765432 37999999999997 2 36999999998
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+.++|+.... ..++|+|+.|+|... +.
T Consensus 140 ~~~~lt~~~~----------------------~~~~~~g~~iy~t~~--g~----------------------------- 166 (302)
T 3s25_A 140 EKKKIKNHYL----------------------FTCNTSDRYFYYNNP--KN----------------------------- 166 (302)
T ss_dssp CCEEEESSCC----------------------CCSEEETTEEEEECT--TT-----------------------------
T ss_pred CeEEEeCCCc----------------------eEeeEECCEEEEEeC--CC-----------------------------
Confidence 8888886532 236889999998753 11
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
.+|++.+++++..+++.. ... ..+ ++|+|+.|+++.... ...|++.+++++..+.|++...+
T Consensus 167 ----~~Iy~~~l~g~~~~~l~~---------~~~--~~~-~~P~g~~iy~t~~~~--~~~I~~~~ldG~~~~~Lt~~~~~ 228 (302)
T 3s25_A 167 ----GQLYRYDTASQSEALFYD---------CNC--YKP-VVLDDTNVYYMDVNR--DNAIVHVNINNPNPVVLTEANIE 228 (302)
T ss_dssp ----CCEEEEETTTTEEEEEEC---------SCE--EEE-EEEETTEEEEEEGGG--TTEEEEECSSSCCCEECSCSCEE
T ss_pred ----ceEEEEECCCCCEEEEeC---------CCc--cce-eeecCCEEEEEEcCC--CcEEEEEECCCCCeEEEeCCCcc
Confidence 358999999988777721 111 123 569999888876433 26799999999998888654322
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCcee
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
| + +..++.++|.++..+ ..|++++++|...++|+.++. . .+++.+++|||+....+
T Consensus 229 -~------~-------~~~g~~Iy~~~~~~~-~~i~~~~~DG~~r~~l~~~~~--~---~i~i~~d~Iy~td~~~~---- 284 (302)
T 3s25_A 229 -H------Y-------NVYGSLIFYQRGGDN-PALCVVKNDGTGFKELAKGEF--C---NINVTSQYVYFTDFVSN---- 284 (302)
T ss_dssp -E------E-------EEETTEEEEEECSSS-CEEEEEETTSCCCEEEEESCE--E---EEEECSSEEEEEETTTC----
T ss_pred -e------E-------EECCCEEEEEECCCC-cEEEEEECCCCccEEeeCCcc--c---eEEEeCCEEEEEECCCC----
Confidence 2 2 234566877766543 799999999999888887642 1 36778899999976543
Q ss_pred eEEEEEeCCCCC
Q 004067 441 HLYCAKLYPDWN 452 (776)
Q Consensus 441 ~l~~~~~~~~g~ 452 (776)
.|+++++ +|+
T Consensus 285 ~i~~~~~--dGs 294 (302)
T 3s25_A 285 KEYCTST--QNP 294 (302)
T ss_dssp CEEEEES--SSC
T ss_pred eEEEEEC--CCC
Confidence 4899998 676
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=174.64 Aligned_cols=242 Identities=14% Similarity=0.144 Sum_probs=153.2
Q ss_pred CceEEEEEcCC--C--cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccccc-ccchhhhHHHH-hCCcEEEEECC
Q 004067 523 PPDIVQIQAND--G--TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI-NTVDMRAQYLR-SKGILVWKLDN 596 (776)
Q Consensus 523 ~~~~~~~~~~d--g--~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~-~~~~~~~~~l~-~~G~~v~~~d~ 596 (776)
+..++.+.+.| | ..+.++++.|.+. .++.|+|++.||......-...+. ......+..|+ ++||+|+++|+
T Consensus 42 ~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~---~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~D~ 118 (377)
T 4ezi_A 42 QLYKINYKTQSPDGNLTIASGLVAMPIHP---VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDY 118 (377)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEESSC---SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEECC
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEECCCC---CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEeCC
Confidence 45567776654 4 4588999999874 257899999999763211000000 00112355677 99999999999
Q ss_pred CCCCCCch---hhhhhhhhccCCccHHHHHHHHHHHHHcCCC-CCCcEEEEeechHHHHHHHHHhhCCC-----ceEEEE
Q 004067 597 RGTARRGL---KFEASIKHNCGRIDAEDQLTGAEWLIKQGLA-KVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAV 667 (776)
Q Consensus 597 rg~g~~~~---~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i-d~~~i~l~G~S~GG~~a~~~a~~~~~-----~~~~~v 667 (776)
||+|.++. .+..... ....+.|.++++..+.....+ +.++++++||||||++++.++..+|+ .+.+++
T Consensus 119 rG~G~s~~~~~~~~~~~~---~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~ 195 (377)
T 4ezi_A 119 LGLGDNELTLHPYVQAET---LASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVA 195 (377)
T ss_dssp TTSTTCCCSSCCTTCHHH---HHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEE
T ss_pred CCCCCCCCCCcccccchh---HHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEE
Confidence 99998874 2211110 011244555555444443233 56899999999999999999886543 478888
Q ss_pred EcCCCCCcccc----c----------------------cccc--ccccC-----------------------CCCCCccc
Q 004067 668 SGAPVTSWDGY----D----------------------TFYT--EKYMG-----------------------LPSEDPVG 696 (776)
Q Consensus 668 ~~~~~~~~~~~----~----------------------~~~~--~~~~~-----------------------~~~~~~~~ 696 (776)
+.++..+.... . ..|. ..++. .+......
T Consensus 196 ~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (377)
T 4ezi_A 196 PGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLI 275 (377)
T ss_dssp EESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGG
T ss_pred ecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHH
Confidence 88877663210 0 0000 00000 00000000
Q ss_pred ----hh---c--CCh-hhh--------hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecC--CCCCCC
Q 004067 697 ----YE---Y--SSV-MHH--------VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD--ERHMPR 756 (776)
Q Consensus 697 ----~~---~--~~~-~~~--------~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H~~~ 756 (776)
+. . .++ +.. ...++.|+|++||..|.++|+.++.++++++++.|. ++++++++ .+|...
T Consensus 276 ~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~~~~~~H~~~ 354 (377)
T 4ezi_A 276 FQPKFSNGIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSVSDALDHVQA 354 (377)
T ss_dssp BCHHHHHHHHTTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEESCSSCCTTTT
T ss_pred hchhhhhhcccccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcCCCCCCccCh
Confidence 00 0 111 100 114468999999999999999999999999999999 99999999 899752
Q ss_pred CCCcHHHHHHHHHHHHHHh
Q 004067 757 RHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 757 ~~~~~~~~~~~~~~fl~~~ 775 (776)
.......+.+||+++
T Consensus 355 ----~~~~~~~~~~wl~~~ 369 (377)
T 4ezi_A 355 ----HPFVLKEQVDFFKQF 369 (377)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHh
Confidence 456678889999876
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=169.56 Aligned_cols=209 Identities=13% Similarity=0.093 Sum_probs=140.1
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCC---Ccccccccccccchhhh-HHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGP---CVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~---~~~~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
.++++....+ .|.||++||.+ ++.. .|...+ ..|++. |.|+++|+||+|.|.....
T Consensus 23 ~~l~y~~~G~---------g~~vvllHG~~~~~~~~~-------~w~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~~--- 82 (286)
T 2puj_A 23 FNIHYNEAGN---------GETVIMLHGGGPGAGGWS-------NYYRNVGPFVDAG-YRVILKDSPGFNKSDAVVM--- 82 (286)
T ss_dssp EEEEEEEECC---------SSEEEEECCCSTTCCHHH-------HHTTTHHHHHHTT-CEEEEECCTTSTTSCCCCC---
T ss_pred EEEEEEecCC---------CCcEEEECCCCCCCCcHH-------HHHHHHHHHHhcc-CEEEEECCCCCCCCCCCCC---
Confidence 7788776531 26799999974 3321 233446 677765 9999999999998864211
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc------c---cc--
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD------G---YD-- 679 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~------~---~~-- 679 (776)
..+.++++.+.+..++++. +.+++.|+||||||.+|+.+|.++|++++++|+.+|..... . ..
T Consensus 83 ----~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 156 (286)
T 2puj_A 83 ----DEQRGLVNARAVKGLMDAL--DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLL 156 (286)
T ss_dssp ----SSCHHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHH
T ss_pred ----cCcCHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHH
Confidence 0223555655555555543 34689999999999999999999999999999988754210 0 00
Q ss_pred -ccc-----------cccccCCCC-CCc----cchh----------------------cCChhhhhccCCCcEEEEecCC
Q 004067 680 -TFY-----------TEKYMGLPS-EDP----VGYE----------------------YSSVMHHVHKMKGKLLLVHGMI 720 (776)
Q Consensus 680 -~~~-----------~~~~~~~~~-~~~----~~~~----------------------~~~~~~~~~~i~~P~lii~G~~ 720 (776)
..+ .......+. ... ..+. ..+....+.++++|+|+++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~ 236 (286)
T 2puj_A 157 FKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRD 236 (286)
T ss_dssp HHHHHSCCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETT
T ss_pred HHHhhCCcHHHHHHHHHHHhcCCccCCHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECC
Confidence 000 000000000 000 0000 0112235678889999999999
Q ss_pred CCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 721 DENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 721 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
|..+|+..+..+.+.+ .+.++++++++||.. ..+.++++.+.+.+||.+
T Consensus 237 D~~~p~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 237 DRFVPLDHGLKLLWNI----DDARLHVFSKCGAWA-QWEHADEFNRLVIDFLRH 285 (286)
T ss_dssp CSSSCTHHHHHHHHHS----SSEEEEEESSCCSCH-HHHTHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHC----CCCeEEEeCCCCCCc-cccCHHHHHHHHHHHHhc
Confidence 9999998888777665 567999999999976 456788899999999975
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=174.72 Aligned_cols=202 Identities=14% Similarity=0.135 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+||++||.+++.. .|..++..|++ ||.|+++|+||+|.+........ .....+++.+.+..+++..
T Consensus 29 ~~vv~lHG~~~~~~-------~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~~~~~~----~~~~~~~~~~~~~~~~~~~- 95 (282)
T 3qvm_A 29 KTVLLAHGFGCDQN-------MWRFMLPELEK-QFTVIVFDYVGSGQSDLESFSTK----RYSSLEGYAKDVEEILVAL- 95 (282)
T ss_dssp CEEEEECCTTCCGG-------GGTTTHHHHHT-TSEEEECCCTTSTTSCGGGCCTT----GGGSHHHHHHHHHHHHHHT-
T ss_pred CeEEEECCCCCCcc-------hHHHHHHHHhc-CceEEEEecCCCCCCCCCCCCcc----ccccHHHHHHHHHHHHHHc-
Confidence 89999999776643 23445778877 99999999999998875421100 1113556666666565543
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc---------------------------cccccc
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF---------------------------YTEKYM 687 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~---------------------------~~~~~~ 687 (776)
+.++++++||||||.+++.++.++|++++++++.+|.......... +.....
T Consensus 96 -~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (282)
T 3qvm_A 96 -DLVNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVM 174 (282)
T ss_dssp -TCCSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhcc
Confidence 3468999999999999999999999999999999887532211000 000000
Q ss_pred CCCCC--------------Cc-------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEE
Q 004067 688 GLPSE--------------DP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 746 (776)
Q Consensus 688 ~~~~~--------------~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 746 (776)
..... .. ......+....+.++++|+|+++|++|..+++..+..+.+.+ .+.+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~ 250 (282)
T 3qvm_A 175 GASHSSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENI----PNSQLE 250 (282)
T ss_dssp CTTSCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCCHHHHHHHHHHS----SSEEEE
T ss_pred CCccchhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCCHHHHHHHHHhC----CCCcEE
Confidence 00000 00 000112233456788999999999999999998888887765 567999
Q ss_pred EecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 747 IFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 747 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++++++|.+ ..+..+++.+.+.+||+++
T Consensus 251 ~~~~~gH~~-~~~~~~~~~~~i~~fl~~~ 278 (282)
T 3qvm_A 251 LIQAEGHCL-HMTDAGLITPLLIHFIQNN 278 (282)
T ss_dssp EEEEESSCH-HHHCHHHHHHHHHHHHHHC
T ss_pred EecCCCCcc-cccCHHHHHHHHHHHHHhc
Confidence 999999987 4456888999999999875
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=174.58 Aligned_cols=224 Identities=14% Similarity=0.147 Sum_probs=143.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+...+++.+| .+.++...+ +.|+||++||.+++.. .|..++..+.+.||.|+++|+||+|.+.
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~--------~~~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~G~s~ 66 (279)
T 4g9e_A 3 INYHELETSHG-RIAVRESEG--------EGAPLLMIHGNSSSGA-------IFAPQLEGEIGKKWRVIAPDLPGHGKST 66 (279)
T ss_dssp CEEEEEEETTE-EEEEEECCC--------CEEEEEEECCTTCCGG-------GGHHHHHSHHHHHEEEEEECCTTSTTSC
T ss_pred eEEEEEEcCCc-eEEEEecCC--------CCCeEEEECCCCCchh-------HHHHHHhHHHhcCCeEEeecCCCCCCCC
Confidence 45667777665 566554432 3488999999876644 2444566666779999999999999887
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc--
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-- 681 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~-- 681 (776)
....... .....++.+.+..+++.. +.+++.++||||||.+++.++.++|+..+.+++.++..........
T Consensus 67 ~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~~~~vl~~~~~~~~~~~~~~~~ 139 (279)
T 4g9e_A 67 DAIDPDR-----SYSMEGYADAMTEVMQQL--GIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREEVGQGFK 139 (279)
T ss_dssp CCSCHHH-----HSSHHHHHHHHHHHHHHH--TCCCCEEEEETHHHHHHHHHTTTCTTCCEEEEESCCCCCGGGHHHHBC
T ss_pred CCCCccc-----CCCHHHHHHHHHHHHHHh--CCCceEEEEECchHHHHHHHHhhCCcceeEEEecCCCCCCCccchhhc
Confidence 5321111 113555555555555442 3458999999999999999999999954444444443322110000
Q ss_pred --------------------ccccccCCCCCC--ccc------------------hhcCChhhhhccCCCcEEEEecCCC
Q 004067 682 --------------------YTEKYMGLPSED--PVG------------------YEYSSVMHHVHKMKGKLLLVHGMID 721 (776)
Q Consensus 682 --------------------~~~~~~~~~~~~--~~~------------------~~~~~~~~~~~~i~~P~lii~G~~D 721 (776)
+.......+... ... ....+....+.++++|+|+++|++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D 219 (279)
T 4g9e_A 140 SGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDE 219 (279)
T ss_dssp CSTTGGGGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSCEEEEEETTC
T ss_pred cchhhhhcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCCEEEEEcCCC
Confidence 000000000000 000 0012233446778999999999999
Q ss_pred CccChHHHHHHH-HHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 722 ENVHFRHTARLI-NALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 722 ~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..+++.....+. +. ..++++++++++||.+ ..+.++++.+.+.+||++.
T Consensus 220 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~ 269 (279)
T 4g9e_A 220 PFVELDFVSKVKFGN----LWEGKTHVIDNAGHAP-FREAPAEFDAYLARFIRDC 269 (279)
T ss_dssp SSBCHHHHTTCCCSS----BGGGSCEEETTCCSCH-HHHSHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHhhcc----CCCCeEEEECCCCcch-HHhCHHHHHHHHHHHHHHh
Confidence 999988776665 32 2356889999999986 5567889999999999874
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=170.34 Aligned_cols=212 Identities=16% Similarity=0.074 Sum_probs=139.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCCCchhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
+|..+++.... +.|+||++||.+++.. .|..++..|++ .||.|+++|+||+|.+.....
T Consensus 9 ~g~~l~y~~~g---------~~~~vv~lhG~~~~~~-------~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~~~---- 68 (272)
T 3fsg_A 9 TRSNISYFSIG---------SGTPIIFLHGLSLDKQ-------STCLFFEPLSNVGQYQRIYLDLPGMGNSDPISP---- 68 (272)
T ss_dssp CTTCCEEEEEC---------CSSEEEEECCTTCCHH-------HHHHHHTTSTTSTTSEEEEECCTTSTTCCCCSS----
T ss_pred cCCeEEEEEcC---------CCCeEEEEeCCCCcHH-------HHHHHHHHHhccCceEEEEecCCCCCCCCCCCC----
Confidence 66667766543 2267899999876643 23334555666 799999999999998865332
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc-------cc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY-------TE 684 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~ 684 (776)
...+++.+.+..+++.. .+..++.++||||||.+++.++.++|++++++++.+|........... ..
T Consensus 69 -----~~~~~~~~~~~~~l~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 142 (272)
T 3fsg_A 69 -----STSDNVLETLIEAIEEI-IGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEE 142 (272)
T ss_dssp -----CSHHHHHHHHHHHHHHH-HTTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECS
T ss_pred -----CCHHHHHHHHHHHHHHH-hCCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhh
Confidence 22344444433333320 134689999999999999999999999999999988764221100000 00
Q ss_pred cccCCCC-------------CCcc----------------------chh-----cCChhhhhccCCCcEEEEecCCCCcc
Q 004067 685 KYMGLPS-------------EDPV----------------------GYE-----YSSVMHHVHKMKGKLLLVHGMIDENV 724 (776)
Q Consensus 685 ~~~~~~~-------------~~~~----------------------~~~-----~~~~~~~~~~i~~P~lii~G~~D~~v 724 (776)
.+..... .... .+. .......+.++++|+|+++|++|..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~ 222 (272)
T 3fsg_A 143 DINPVENKEYFADFLSMNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVV 222 (272)
T ss_dssp CCCCCTTGGGHHHHHHHCSEESHHHHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTT
T ss_pred hhhcccCHHHHHHHHHHhccCCCchhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcC
Confidence 0000000 0000 000 00111134678899999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 725 HFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 725 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++.....+.+.+ .++++++++++||.+ ..+.++++.+.+.+||++.
T Consensus 223 ~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~ 268 (272)
T 3fsg_A 223 GYQEQLKLINHN----ENGEIVLLNRTGHNL-MIDQREAVGFHFDLFLDEL 268 (272)
T ss_dssp CSHHHHHHHTTC----TTEEEEEESSCCSSH-HHHTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc----CCCeEEEecCCCCCc-hhcCHHHHHHHHHHHHHHh
Confidence 998887776654 568999999999987 4466889999999999864
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=178.86 Aligned_cols=301 Identities=10% Similarity=0.021 Sum_probs=179.4
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+.+++|||||++||-.+.+ ..|. |+..++ .+.. +...+....|+|
T Consensus 16 ~~v~sv~~SpDG~~iASas~D-----~TV~--d~~~~~--~l~g------------------------h~~~v~~V~FsP 62 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPD-----ISIG--QPKYAK--DINC------------------------NSKNLFHVKEFP 62 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSS-----EEEE--EECCCS--CCSS------------------------BGGGTEEEEEEC
T ss_pred ccEEEEEECCCCCEEEEEcCC-----ceee--cccccc--eecC------------------------CCccEEEEEECC
Confidence 446899999999999954432 2344 544443 2222 234788999999
Q ss_pred cCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCc
Q 004067 135 TSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 135 ~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
|| .++ .|++..++....++......+...+|||||+.||..+. +.+.+|+.++ ....+. ...
T Consensus 63 ---dg------~~~---~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~--- 125 (588)
T 2j04_A 63 ---LE------FEN---KLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKG--- 125 (588)
T ss_dssp ---CC------CCC---TTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSS---
T ss_pred ---CC------Ccc---eEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCC---
Confidence 99 222 33444333221222122345889999999999999886 5799998654 222222 110
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
..... .+..++|||||+.|+..+.+ ..|.+||+.
T Consensus 126 ~~~~~----------sv~svafSPDG~~LAsgs~D------------------------------------GtVkIWd~~ 159 (588)
T 2j04_A 126 NLSSR----------TYHCFEWNPIESSIVVGNED------------------------------------GELQFFSIR 159 (588)
T ss_dssp CSTTT----------CEEEEEECSSSSCEEEEETT------------------------------------SEEEEEECC
T ss_pred ccccc----------cEEEEEEcCCCCEEEEEcCC------------------------------------CEEEEEECC
Confidence 00000 14578999999999987754 458999999
Q ss_pred CCce--------EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE----EEEE-eccC
Q 004067 294 GGPV--------SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK----VILV-EELD 360 (776)
Q Consensus 294 ~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~----~l~~-~~~~ 360 (776)
+++. ..+... ..++...+..++||||| ++..+ .+..+++||++++... .+.. +...
T Consensus 160 ~~~l~~~~~i~l~ti~~~-----~~gh~~~V~sVawSPdg--Laass----~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLS-----DAGSKDWVTHIVWYEDV--LVAAL----SNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp CCTTTCCCCEEEEEEECS-----CTTCCCCEEEEEEETTE--EEEEE----TTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred CCccccccceeeeeeecc-----cccccccEEEEEEcCCc--EEEEe----CCCeEEEEECCCCccccceeeecccccCc
Confidence 9863 333221 12355689999999999 44443 3566999999887742 2321 2222
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccc-cCCeEEEEEEee--cCCCcEEEEEEccCCC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT-EGDWMVEQIVGV--NEASGQVYFTGTLDGP 437 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt-~~~~~~~~~~~~--s~dg~~i~~~~~~~~~ 437 (776)
.+. ++|. ++.++++. ++ .|.+|+..+++...+. .+...+..+. + ++|++. +..+..++
T Consensus 229 V~s------------vaFs-g~~LASa~-~~--tIkLWd~~~~~~~~~~~gh~~~V~~va-~~~s~d~~~-La~a~edG- 289 (588)
T 2j04_A 229 ITD------------LKIV-DYKVVLTC-PG--YVHKIDLKNYSISSLKTGSLENFHIIP-LNHEKESTI-LLMSNKTS- 289 (588)
T ss_dssp CCC------------EEEE-TTEEEEEC-SS--EEEEEETTTTEEEEEECSCCSCCCEEE-ETTCSSCEE-EEECSSCE-
T ss_pred EEE------------EEEE-CCEEEEEe-CC--eEEEEECCCCeEEEEEcCCCceEEEEE-eeeCCCCCE-EEEEcCCC-
Confidence 221 1333 34555543 34 9999999988875544 4444455554 8 999864 44444443
Q ss_pred ceeeEEEE-----EeCCCCCCcc-------------ccceeecCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 438 LESHLYCA-----KLYPDWNHTL-------------EAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 438 ~~~~l~~~-----~~~~~g~~~~-------------~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
. +||.. .. ++.--. .+...+.....+++++|||||+.+|..+.-
T Consensus 290 -~-klw~~d~~~~sp--d~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i 351 (588)
T 2j04_A 290 -Y-KVLLEDELHVTA--DNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM 351 (588)
T ss_dssp -E-EEEESSSEEEEC--CCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred -C-EEEeeccEEECC--CceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEec
Confidence 2 56653 32 221000 011122221136788999999999887653
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-18 Score=168.91 Aligned_cols=207 Identities=17% Similarity=0.175 Sum_probs=136.6
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhc
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 613 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~ 613 (776)
|.++++..+.+.+ +.|+||++||.+++.. .| . ....|+ .||.|+++|+||+|.+...
T Consensus 2 g~~l~y~~~g~~~------~~~~vv~~hG~~~~~~---~~----~-~~~~l~-~g~~v~~~d~~g~g~s~~~-------- 58 (245)
T 3e0x_A 2 NAMLHYVHVGNKK------SPNTLLFVHGSGCNLK---IF----G-ELEKYL-EDYNCILLDLKGHGESKGQ-------- 58 (245)
T ss_dssp CCCCCEEEEECTT------CSCEEEEECCTTCCGG---GG----T-TGGGGC-TTSEEEEECCTTSTTCCSC--------
T ss_pred CceeEEEecCCCC------CCCEEEEEeCCcccHH---HH----H-HHHHHH-hCCEEEEecCCCCCCCCCC--------
Confidence 3445666665432 4589999999877654 23 2 234454 7999999999999988622
Q ss_pred cCCccHHHHHHHHHHHH----HcCCCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCCCCcccccccccc----
Q 004067 614 CGRIDAEDQLTGAEWLI----KQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDGYDTFYTE---- 684 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~----~~~~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~~~~~~~~~~~~~---- 684 (776)
.....+++.+.+..+. ....+. +++++||||||.+++.++.+ +|+ ++++++.+|..........+..
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~ 134 (245)
T 3e0x_A 59 -CPSTVYGYIDNVANFITNSEVTKHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYH 134 (245)
T ss_dssp -CCSSHHHHHHHHHHHHHHCTTTTTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHT
T ss_pred -CCcCHHHHHHHHHHHHHhhhhHhhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHH
Confidence 1223555555555555 112223 99999999999999999999 999 9999999987654211100000
Q ss_pred ---------------------cccCCCCCCcc-------chhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHH
Q 004067 685 ---------------------KYMGLPSEDPV-------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 736 (776)
Q Consensus 685 ---------------------~~~~~~~~~~~-------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l 736 (776)
.+......... .....+....+.++++|+|+++|++|..+++..+..+.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 214 (245)
T 3e0x_A 135 NQLDNNYLLECIGGIDNPLSEKYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEV 214 (245)
T ss_dssp TCCCHHHHHHHHTCSCSHHHHHHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHS
T ss_pred HHHHhhcCcccccccchHHHHHHHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCCHHHHHHHHHHc
Confidence 00000000000 01122334557788999999999999999999888887765
Q ss_pred HHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 737 VAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 737 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
.+++++++++++|.+ ..+..+++.+.+.+||
T Consensus 215 ----~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl 245 (245)
T 3e0x_A 215 ----ENSELKIFETGKHFL-LVVNAKGVAEEIKNFI 245 (245)
T ss_dssp ----SSEEEEEESSCGGGH-HHHTHHHHHHHHHTTC
T ss_pred ----CCceEEEeCCCCcce-EEecHHHHHHHHHhhC
Confidence 468999999999986 3445666666666653
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=172.39 Aligned_cols=198 Identities=11% Similarity=0.039 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|.||++||.+++.. .|..++..|++. |.|+++|+||+|.|.... ...+.++.+.+..+++..
T Consensus 16 ~~~vvllHG~~~~~~-------~w~~~~~~L~~~-~~via~Dl~G~G~S~~~~---------~~~~~~~a~dl~~~l~~l 78 (255)
T 3bf7_A 16 NSPIVLVHGLFGSLD-------NLGVLARDLVND-HNIIQVDVRNHGLSPREP---------VMNYPAMAQDLVDTLDAL 78 (255)
T ss_dssp CCCEEEECCTTCCTT-------TTHHHHHHHTTT-SCEEEECCTTSTTSCCCS---------CCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcccHh-------HHHHHHHHHHhh-CcEEEecCCCCCCCCCCC---------CcCHHHHHHHHHHHHHHc
Confidence 478999999876543 345556777765 999999999999886421 112333433333333321
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC--CCccc-cccc-----------cc-----ccccCCCCCCc
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV--TSWDG-YDTF-----------YT-----EKYMGLPSEDP 694 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~--~~~~~-~~~~-----------~~-----~~~~~~~~~~~ 694 (776)
..+++.|+||||||.+++.+|.++|++++++|+.++. ..... .... +. ...+.......
T Consensus 79 --~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (255)
T 3bf7_A 79 --QIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEE 156 (255)
T ss_dssp --TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCH
T ss_pred --CCCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchh
Confidence 3358999999999999999999999999999886432 11000 0000 00 00000000000
Q ss_pred ---cc---------hhcC------C--hh---hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCC
Q 004067 695 ---VG---------YEYS------S--VM---HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 751 (776)
Q Consensus 695 ---~~---------~~~~------~--~~---~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 751 (776)
.. +... . .+ ..+.++++|+|+++|++|..+++.....+.+.+ .+.++++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~ 232 (255)
T 3bf7_A 157 GVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQF----PQARAHVIAGA 232 (255)
T ss_dssp HHHHHHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTCGGGHHHHHHHC----TTEEECCBTTC
T ss_pred HHHHHHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCCHHHHHHHHHHC----CCCeEEEeCCC
Confidence 00 0000 0 00 124578899999999999999988877776654 56899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 752 RHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 752 ~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
||.+ ..+.++.+.+.+.+||.+|
T Consensus 233 gH~~-~~e~p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 233 GHWV-HAEKPDAVLRAIRRYLNDH 255 (255)
T ss_dssp CSCH-HHHCHHHHHHHHHHHHHTC
T ss_pred CCcc-ccCCHHHHHHHHHHHHhcC
Confidence 9986 5567889999999999875
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=172.06 Aligned_cols=230 Identities=14% Similarity=0.121 Sum_probs=141.4
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+.+...+.. +|..+++..+. + .|+||++||.+++.. .|...+..|++.||.|+++|+||+|.|
T Consensus 10 ~~~~~~~~~-~g~~l~y~~~G--~-------g~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~via~Dl~G~G~S 72 (328)
T 2cjp_A 10 KIEHKMVAV-NGLNMHLAELG--E-------GPTILFIHGFPELWY-------SWRHQMVYLAERGYRAVAPDLRGYGDT 72 (328)
T ss_dssp CCEEEEEEE-TTEEEEEEEEC--S-------SSEEEEECCTTCCGG-------GGHHHHHHHHTTTCEEEEECCTTSTTC
T ss_pred hhheeEecC-CCcEEEEEEcC--C-------CCEEEEECCCCCchH-------HHHHHHHHHHHCCcEEEEECCCCCCCC
Confidence 344444444 78888887664 1 268999999876543 345567788889999999999999998
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC-------c
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS-------W 675 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~-------~ 675 (776)
....... ...+.++++.+.+..+++.-..+.+++.|+||||||.+++.+|.++|++++++|+.++... +
T Consensus 73 ~~~~~~~----~~~~~~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~ 148 (328)
T 2cjp_A 73 TGAPLND----PSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKRNPKMNV 148 (328)
T ss_dssp BCCCTTC----GGGGSHHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCSSCCH
T ss_pred CCcCcCC----cccccHHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccCCCcccccCCh
Confidence 6430000 0011233333333333332110246899999999999999999999999999998764321 0
Q ss_pred c-cccc---------cc------------------cccccC----C----CCC-----------------Cccc---h--
Q 004067 676 D-GYDT---------FY------------------TEKYMG----L----PSE-----------------DPVG---Y-- 697 (776)
Q Consensus 676 ~-~~~~---------~~------------------~~~~~~----~----~~~-----------------~~~~---~-- 697 (776)
. .... .+ ...+.. . +.. .... +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (328)
T 2cjp_A 149 VEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYAN 228 (328)
T ss_dssp HHHHHHHHCTTBHHHHTSSTTHHHHHHHHHCHHHHHHHHHTCCCSSCCBCCTTCTTTTSCCCCGGGGTTSCHHHHHHHHH
T ss_pred HHHHHhhcccchHHHhhhCCCcHHHHhhccCHHHHHHHHhcccCCCcccccccchhhhcccccccCcCCCCHHHHHHHHH
Confidence 0 0000 00 000000 0 000 0000 0
Q ss_pred --hc------------CC-hh-----hhhccCCCcEEEEecCCCCccChHHHHHHH--HHHHHCCCCe-EEEEecCCCCC
Q 004067 698 --EY------------SS-VM-----HHVHKMKGKLLLVHGMIDENVHFRHTARLI--NALVAARKPY-EILIFPDERHM 754 (776)
Q Consensus 698 --~~------------~~-~~-----~~~~~i~~P~lii~G~~D~~v~~~~~~~~~--~~l~~~~~~~-~~~~~~~~~H~ 754 (776)
.. .. .. ..+.++++|+|+++|++|..+++..+.+.. +.+.+.-.+. ++++++++||.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~gH~ 308 (328)
T 2cjp_A 229 KFEQTGFTGAVNYYRALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHF 308 (328)
T ss_dssp HHHHHCSHHHHHHHHTHHHHHHHTGGGTTCCCCSCEEEEEETTCGGGGSTTHHHHHHHSHHHHHSTTBCCCEEETTCCSC
T ss_pred HhcccCCcchHHHHHhcccchhhhhhccCCccCCCEEEEEeCCcccccCcchhhhhhhhhHHHHhcCCeeEEEcCCCCCC
Confidence 00 00 00 024577899999999999999875433332 3343333566 78999999998
Q ss_pred CCCCCcHHHHHHHHHHHHHH
Q 004067 755 PRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 755 ~~~~~~~~~~~~~~~~fl~~ 774 (776)
+ ..+.++++.+.+.+||.+
T Consensus 309 ~-~~e~p~~~~~~i~~fl~~ 327 (328)
T 2cjp_A 309 V-SQERPHEISKHIYDFIQK 327 (328)
T ss_dssp H-HHHSHHHHHHHHHHHHTT
T ss_pred c-chhCHHHHHHHHHHHHHh
Confidence 7 556789999999999964
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-18 Score=180.35 Aligned_cols=220 Identities=12% Similarity=0.065 Sum_probs=139.6
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccc-----------cccccccchhhhHHHHhCCcEE
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV-----------CDSWINTVDMRAQYLRSKGILV 591 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~-----------~~~~~~~~~~~~~~l~~~G~~v 591 (776)
..+.+.+++.+|..++++++.|++. .++.|+||++||+++.... .+.|......+++.|+++||+|
T Consensus 91 ~~e~v~~~~~~g~~l~~~l~~P~~~---~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~Gy~V 167 (398)
T 3nuz_A 91 RLEKWEFYPLPKCVSTFLVLIPDNI---NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIA 167 (398)
T ss_dssp EEEEEEECCSTTBCEEEEEEEESSC---CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTTCEE
T ss_pred EEEEEEEEcCCCcEEEEEEEeCCCC---CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCCCEE
Confidence 4677889988999999999999873 2578999999997664321 0111111114688999999999
Q ss_pred EEECCCCCCCCchhhhh------------h----hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHH
Q 004067 592 WKLDNRGTARRGLKFEA------------S----IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 655 (776)
Q Consensus 592 ~~~d~rg~g~~~~~~~~------------~----~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 655 (776)
+++|+||+|.++..... . ....+......|+.++++++.++..+|.+||+|+||||||++++.+
T Consensus 168 l~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a~~~ 247 (398)
T 3nuz_A 168 VAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVL 247 (398)
T ss_dssp EEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHHHHH
T ss_pred EEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHHHHH
Confidence 99999999987643210 0 0001111235799999999999888999999999999999999998
Q ss_pred HhhCCCceEEEEEcCCCCCcccccccccc-cccC---CCC----CCccchhcCChhhhhccC-CCcEEEEecCCCCccCh
Q 004067 656 LARFPDVFQCAVSGAPVTSWDGYDTFYTE-KYMG---LPS----EDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHF 726 (776)
Q Consensus 656 a~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~---~~~----~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~ 726 (776)
++..+ +++++|+.+++..+......+.. ...+ .+. .....+...+....+..+ ..|+|++||..|..+
T Consensus 248 aa~~~-~i~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~ap~PlLii~G~~D~~v-- 324 (398)
T 3nuz_A 248 GTLDT-SIYAFVYNDFLCQTQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDIVAALAPRPIILTEGGLDRDL-- 324 (398)
T ss_dssp HHHCT-TCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGCCTTHHHHCCHHHHHHHTTTSCEEECSCBCHHHH--
T ss_pred HhcCC-cEEEEEEecccccchhhhhhhccccccccccCCccHHHhcchHhhhCCHHHHHHhhCCCcEEEeeCCchHHH--
Confidence 88754 57888887665554322111110 0000 000 000111222333333332 359999999999554
Q ss_pred HHHHHHHHHHHHCCCCeEEEEec
Q 004067 727 RHTARLINALVAARKPYEILIFP 749 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~ 749 (776)
....++++.+. ...++++++||
T Consensus 325 ~~~~~~y~~~g-~~~~~~~~~~p 346 (398)
T 3nuz_A 325 DLVRKAYAIVG-TPDNVKIYHYK 346 (398)
T ss_dssp HHHHHHHHHHT-CTTSEEECCCG
T ss_pred HHHHHHHHHcC-CCcceEEEEeC
Confidence 44555555442 22467777666
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-18 Score=172.97 Aligned_cols=219 Identities=12% Similarity=0.041 Sum_probs=148.2
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~ 604 (776)
+...+.. +|..+++..+.+++ .|+||++||.+++.. .|..++..|+ .||.|+++|+||+|.+..
T Consensus 11 ~~~~~~~-~g~~l~~~~~g~~~-------~~~vl~lHG~~~~~~-------~~~~~~~~l~-~~~~v~~~d~~G~G~s~~ 74 (299)
T 3g9x_A 11 DPHYVEV-LGERMHYVDVGPRD-------GTPVLFLHGNPTSSY-------LWRNIIPHVA-PSHRCIAPDLIGMGKSDK 74 (299)
T ss_dssp CCEEEEE-TTEEEEEEEESCSS-------SCCEEEECCTTCCGG-------GGTTTHHHHT-TTSCEEEECCTTSTTSCC
T ss_pred ceeeeee-CCeEEEEEecCCCC-------CCEEEEECCCCccHH-------HHHHHHHHHc-cCCEEEeeCCCCCCCCCC
Confidence 3344444 78889988886532 368999999877654 2334566675 599999999999998864
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc---ccccc
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---GYDTF 681 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~---~~~~~ 681 (776)
... ....+++.+.+..+++.. +.+++.++||||||.+++.++.++|++++++|+.++..... .+...
T Consensus 75 ~~~--------~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 144 (299)
T 3g9x_A 75 PDL--------DYFFDDHVRYLDAFIEAL--GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEF 144 (299)
T ss_dssp CCC--------CCCHHHHHHHHHHHHHHT--TCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGG
T ss_pred CCC--------cccHHHHHHHHHHHHHHh--CCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchH
Confidence 321 234666766666666653 44689999999999999999999999999999887543322 11000
Q ss_pred c-----------------------ccccc---CCCCCCc---cc-----------------hhcC--------------C
Q 004067 682 Y-----------------------TEKYM---GLPSEDP---VG-----------------YEYS--------------S 701 (776)
Q Consensus 682 ~-----------------------~~~~~---~~~~~~~---~~-----------------~~~~--------------~ 701 (776)
. ...+. ....... .. +... +
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (299)
T 3g9x_A 145 ARETFQAFRTADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEA 224 (299)
T ss_dssp GHHHHHHHTSSSHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHH
T ss_pred HHHHHHHHcCCCcchhhhccchhhHHHhhhhhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhh
Confidence 0 00000 0000000 00 0000 1
Q ss_pred hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 702 VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 702 ~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
....+.++++|+|+++|++|..+++.....+.+.+ .++++++++++||.+ ..+.++++.+.+.+++.+
T Consensus 225 ~~~~l~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~~~~~ 292 (299)
T 3g9x_A 225 YMNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESL----PNCKTVDIGPGLHYL-QEDNPDLIGSEIARWLPA 292 (299)
T ss_dssp HHHHHHHCCSCEEEEEEEECSSSCHHHHHHHHHHS----TTEEEEEEEEESSCH-HHHCHHHHHHHHHHHSGG
T ss_pred hhhhcccCCCCeEEEecCCCCCCCHHHHHHHHhhC----CCCeEEEeCCCCCcc-hhcCHHHHHHHHHHHHhh
Confidence 12235678899999999999999999888887765 568899999999986 556788888888887654
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=168.32 Aligned_cols=220 Identities=15% Similarity=0.134 Sum_probs=137.9
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+...+...+|..+++..+.+.+ .|.||++||++++.. + ......+...+|.|+++|+||+|.|.
T Consensus 11 ~~~~~~~~~~g~~l~y~~~G~~~-------g~pvvllHG~~~~~~----~----~~~~~~~~~~~~~vi~~D~~G~G~S~ 75 (313)
T 1azw_A 11 YQQGSLKVDDRHTLYFEQCGNPH-------GKPVVMLHGGPGGGC----N----DKMRRFHDPAKYRIVLFDQRGSGRST 75 (313)
T ss_dssp SEEEEEECSSSCEEEEEEEECTT-------SEEEEEECSTTTTCC----C----GGGGGGSCTTTEEEEEECCTTSTTSB
T ss_pred cccceEEcCCCCEEEEEecCCCC-------CCeEEEECCCCCccc----c----HHHHHhcCcCcceEEEECCCCCcCCC
Confidence 45566777788888888775422 256899999765432 1 11123344579999999999999986
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc------
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------ 677 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~------ 677 (776)
... ........++.+.+..+++.. ..+++.|+||||||.+++.+|.++|++++++|+.++......
T Consensus 76 ~~~------~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 147 (313)
T 1azw_A 76 PHA------DLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFLLRRFELEWFY 147 (313)
T ss_dssp STT------CCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHH
T ss_pred CCc------ccccccHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccccCchhhhHHHH
Confidence 321 011233566666666666553 345899999999999999999999999999998876532100
Q ss_pred -------cccc-------------------ccccccCCC---------------------CCCc---------c------
Q 004067 678 -------YDTF-------------------YTEKYMGLP---------------------SEDP---------V------ 695 (776)
Q Consensus 678 -------~~~~-------------------~~~~~~~~~---------------------~~~~---------~------ 695 (776)
.... +........ .... .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (313)
T 1azw_A 148 QEGASRLFPDAWEHYLNAIPPVERADLMSAFHRRLTSDDEATRLAAAKAWSVWEGATSFLHVDEDFVTGHEDAHFALAFA 227 (313)
T ss_dssp TSSHHHHCHHHHHHHHHTSCGGGTTSHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHTCHHHHHHHH
T ss_pred hhhhhhhchHHHHHHhhccCchhhhhhhhhhhhhccccCcchhhhhhhHHhhhhccccccccccccchhccccchhhHHH
Confidence 0000 000000000 0000 0
Q ss_pred ----------chh--cCChhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHH
Q 004067 696 ----------GYE--YSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 762 (776)
Q Consensus 696 ----------~~~--~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~ 762 (776)
.+. .......+.+++ +|+|+++|++|.++++..+..+.+.+ .+.++++++++||....+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~gH~~~~~---- 299 (313)
T 1azw_A 228 RIENHYFVNGGFFEVEDQLLRDAHRIADIPGVIVHGRYDVVCPLQSAWDLHKAW----PKAQLQISPASGHSAFEP---- 299 (313)
T ss_dssp HHHHHHHHTGGGCSSTTHHHHTGGGGTTCCEEEEEETTCSSSCHHHHHHHHHHC----TTSEEEEETTCCSSTTSH----
T ss_pred HhhhhhhcccccccccchhhhhcccccCCCEEEEecCCCCcCCHHHHHHHHhhC----CCcEEEEeCCCCCCcCCC----
Confidence 000 001123345675 99999999999999998888877765 457899999999976322
Q ss_pred HHHHHHHHHHHH
Q 004067 763 YMEERIWEFIER 774 (776)
Q Consensus 763 ~~~~~~~~fl~~ 774 (776)
+..+.+.+++.+
T Consensus 300 ~~~~~~~~~i~~ 311 (313)
T 1azw_A 300 ENVDALVRATDG 311 (313)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccHHHHHHHHhh
Confidence 334455555443
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=169.00 Aligned_cols=214 Identities=16% Similarity=0.108 Sum_probs=141.2
Q ss_pred CCC-cEEEEEEEcCCCCCCCCCCceEEEEEcCCC---CcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 532 NDG-TVLYGALYKPDESRYGPPPYKTLISVYGGP---CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 532 ~dg-~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~---~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
.+| ..+++....+ ++.|.||++||.. ++.. . |...+..|++. |.|+++|+||+|.|.....
T Consensus 20 ~~g~~~l~y~~~G~-------g~~~~vvllHG~~pg~~~~~---~----w~~~~~~L~~~-~~via~Dl~G~G~S~~~~~ 84 (291)
T 2wue_A 20 VDGPLKLHYHEAGV-------GNDQTVVLLHGGGPGAASWT---N----FSRNIAVLARH-FHVLAVDQPGYGHSDKRAE 84 (291)
T ss_dssp SSSEEEEEEEEECT-------TCSSEEEEECCCCTTCCHHH---H----TTTTHHHHTTT-SEEEEECCTTSTTSCCCSC
T ss_pred eCCcEEEEEEecCC-------CCCCcEEEECCCCCccchHH---H----HHHHHHHHHhc-CEEEEECCCCCCCCCCCCC
Confidence 478 8888877642 2236899999974 3321 2 33446677665 9999999999998864321
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc---------cc
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---------GY 678 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~---------~~ 678 (776)
..+.++++.+.+..+++.- +.+++.|+||||||.+++.+|.++|++++++|+.++..... ..
T Consensus 85 -------~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 155 (291)
T 2wue_A 85 -------HGQFNRYAAMALKGLFDQL--GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGV 155 (291)
T ss_dssp -------CSSHHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHH
T ss_pred -------CCcCHHHHHHHHHHHHHHh--CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhh
Confidence 0123455555555444432 34689999999999999999999999999999988754210 00
Q ss_pred c---cc-----------ccccccCCCCC--------------Ccc----chhc----CC-----hh--hhhccCCCcEEE
Q 004067 679 D---TF-----------YTEKYMGLPSE--------------DPV----GYEY----SS-----VM--HHVHKMKGKLLL 715 (776)
Q Consensus 679 ~---~~-----------~~~~~~~~~~~--------------~~~----~~~~----~~-----~~--~~~~~i~~P~li 715 (776)
. .. +.......+.. ... .+.. .+ .. ..+.++++|+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv 235 (291)
T 2wue_A 156 KRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLL 235 (291)
T ss_dssp HHHHHHHHSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSCEEE
T ss_pred HHHHHHhccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCCeEE
Confidence 0 00 00000000000 000 0000 00 11 456778899999
Q ss_pred EecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 716 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++|++|..+|+..+..+.+.+ .+.++++++++||.. ..+.++++.+.+.+||.+
T Consensus 236 i~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 289 (291)
T 2wue_A 236 IWGREDRVNPLDGALVALKTI----PRAQLHVFGQCGHWV-QVEKFDEFNKLTIEFLGG 289 (291)
T ss_dssp EEETTCSSSCGGGGHHHHHHS----TTEEEEEESSCCSCH-HHHTHHHHHHHHHHHTTC
T ss_pred EecCCCCCCCHHHHHHHHHHC----CCCeEEEeCCCCCCh-hhhCHHHHHHHHHHHHhc
Confidence 999999999998888776654 467999999999976 456688899999999864
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=170.79 Aligned_cols=212 Identities=14% Similarity=0.138 Sum_probs=144.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
++..+++.... +.|+||++||.+++.. .|.. ..+..+++.||.|+++|+||+|.+...
T Consensus 31 ~~~~l~y~~~g---------~~~~vv~lHG~~~~~~---~~~~---~~~~~l~~~g~~vi~~D~~G~G~s~~~------- 88 (293)
T 3hss_A 31 RVINLAYDDNG---------TGDPVVFIAGRGGAGR---TWHP---HQVPAFLAAGYRCITFDNRGIGATENA------- 88 (293)
T ss_dssp CEEEEEEEEEC---------SSEEEEEECCTTCCGG---GGTT---TTHHHHHHTTEEEEEECCTTSGGGTTC-------
T ss_pred ccceEEEEEcC---------CCCEEEEECCCCCchh---hcch---hhhhhHhhcCCeEEEEccCCCCCCCCc-------
Confidence 45556655432 3378999999876654 2321 346778889999999999999866432
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc----------
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY---------- 682 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~---------- 682 (776)
.....+++.+.+..+++.. +.+++.++|||+||.+++.+|.++|++++++++.+|..........+
T Consensus 89 --~~~~~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (293)
T 3hss_A 89 --EGFTTQTMVADTAALIETL--DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDS 164 (293)
T ss_dssp --CSCCHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHH
T ss_pred --ccCCHHHHHHHHHHHHHhc--CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhh
Confidence 1123555555555554432 34689999999999999999999999999999998875432110000
Q ss_pred ------------------ccc--------------ccCCCCCCc-------cchhcCChhhhhccCCCcEEEEecCCCCc
Q 004067 683 ------------------TEK--------------YMGLPSEDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDEN 723 (776)
Q Consensus 683 ------------------~~~--------------~~~~~~~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~ 723 (776)
... ....+.... ......+....+.++++|+|+++|++|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~ 244 (293)
T 3hss_A 165 GVQLPPTYDARARLLENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVV 244 (293)
T ss_dssp TCCCCHHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSS
T ss_pred cccchhhHHHHHHHhhhcccccccccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCC
Confidence 000 000000000 00112234456778899999999999999
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 724 VHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 724 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++..+..+.+.+ .++++++++++||.+ ..+.++++.+.+.+||++.
T Consensus 245 ~~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~ 291 (293)
T 3hss_A 245 TPPYLGREVADAL----PNGRYLQIPDAGHLG-FFERPEAVNTAMLKFFASV 291 (293)
T ss_dssp SCHHHHHHHHHHS----TTEEEEEETTCCTTH-HHHSHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHC----CCceEEEeCCCcchH-hhhCHHHHHHHHHHHHHhc
Confidence 9998888887765 567999999999986 4567788999999999763
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=160.85 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=141.6
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
.++..+|.++ .+|.|.. .+.|+||++|||+....-...| ....+..+++.||.|+++|||+.+.. .+.
T Consensus 8 ~~~~~~~~~~--~~y~p~~-----~~~p~iv~~HGGg~~~g~~~~~---~~~~~~~l~~~g~~Vi~vdYrlaPe~--~~p 75 (274)
T 2qru_A 8 NQTLANGATV--TIYPTTT-----EPTNYVVYLHGGGMIYGTKSDL---PEELKELFTSNGYTVLALDYLLAPNT--KID 75 (274)
T ss_dssp EEECTTSCEE--EEECCSS-----SSCEEEEEECCSTTTSCCGGGC---CHHHHHHHHTTTEEEEEECCCCTTTS--CHH
T ss_pred cccccCCeeE--EEEcCCC-----CCCcEEEEEeCccccCCChhhc---hHHHHHHHHHCCCEEEEeCCCCCCCC--CCc
Confidence 3444566544 5677753 3569999999987433211122 12346678889999999999976543 121
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHh---hCCCceEEEEEcCCCCCccccccc---
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA---RFPDVFQCAVSGAPVTSWDGYDTF--- 681 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~---~~~~~~~~~v~~~~~~~~~~~~~~--- 681 (776)
..++|+.++++++.++.. +.++|+|+|+|+||.+|+.++. ..+..++++++.+|..+.......
T Consensus 76 ---------~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~ 145 (274)
T 2qru_A 76 ---------HILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKL 145 (274)
T ss_dssp ---------HHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCS
T ss_pred ---------HHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhh
Confidence 127899999999987642 2679999999999999999987 356678888888776652110000
Q ss_pred --------ccccccC-CC-----CCCc-c---------chh------------cCCh-hhhhccCCCcEEEEecCCCCcc
Q 004067 682 --------YTEKYMG-LP-----SEDP-V---------GYE------------YSSV-MHHVHKMKGKLLLVHGMIDENV 724 (776)
Q Consensus 682 --------~~~~~~~-~~-----~~~~-~---------~~~------------~~~~-~~~~~~i~~P~lii~G~~D~~v 724 (776)
....... .+ .... . .+. .... ...+.++ +|+||++|+.|..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~~D~~~ 224 (274)
T 2qru_A 146 LKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEV 224 (274)
T ss_dssp CSSCCCSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEETTCSSS
T ss_pred ccccccHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEecCCCCc
Confidence 0000000 00 0000 0 000 0000 0134556 79999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC---CcHHHHHHHHHHHHHHh
Q 004067 725 HFRHTARLINALVAARKPYEILIFPDERHMPRRH---RDRIYMEERIWEFIERT 775 (776)
Q Consensus 725 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~~fl~~~ 775 (776)
+...+.++.+++ ++++++++++++|.+... ....++.+.+.+||+++
T Consensus 225 ~~~~~~~l~~~~----~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~~ 274 (274)
T 2qru_A 225 PFRYSKKIGRTI----PESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKER 274 (274)
T ss_dssp CTHHHHHHHHHS----TTCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhC----CCcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhhC
Confidence 887777776654 567999999999997321 22346688899999764
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=168.45 Aligned_cols=213 Identities=13% Similarity=0.045 Sum_probs=141.0
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCC---CcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGP---CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~---~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
.+|.++++.... ..|.||++||.+ ++.. .|...+..|++. |.|+++|+||+|.|. ...
T Consensus 23 ~~g~~l~y~~~g---------~g~~vvllHG~~~~~~~~~-------~~~~~~~~L~~~-~~vi~~Dl~G~G~S~-~~~- 83 (296)
T 1j1i_A 23 AGGVETRYLEAG---------KGQPVILIHGGGAGAESEG-------NWRNVIPILARH-YRVIAMDMLGFGKTA-KPD- 83 (296)
T ss_dssp ETTEEEEEEEEC---------CSSEEEEECCCSTTCCHHH-------HHTTTHHHHTTT-SEEEEECCTTSTTSC-CCS-
T ss_pred ECCEEEEEEecC---------CCCeEEEECCCCCCcchHH-------HHHHHHHHHhhc-CEEEEECCCCCCCCC-CCC-
Confidence 378888877543 125789999964 2221 233446677665 999999999999886 211
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc----ccc---
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----DTF--- 681 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~----~~~--- 681 (776)
.....+++.+.+..+++...+ .+++.|+||||||.+++.+|.++|++++++|+.+|....... ...
T Consensus 84 ------~~~~~~~~~~dl~~~l~~l~~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 156 (296)
T 1j1i_A 84 ------IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINY 156 (296)
T ss_dssp ------SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------C
T ss_pred ------CCCCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcc
Confidence 112355555555555544322 168999999999999999999999999999998875421100 000
Q ss_pred ---------ccccccCCCCCC-cc----------------chh-----------cCChhhhhccCCCcEEEEecCCCCcc
Q 004067 682 ---------YTEKYMGLPSED-PV----------------GYE-----------YSSVMHHVHKMKGKLLLVHGMIDENV 724 (776)
Q Consensus 682 ---------~~~~~~~~~~~~-~~----------------~~~-----------~~~~~~~~~~i~~P~lii~G~~D~~v 724 (776)
+...+...+... .. .+. .......+.++++|+|+++|++|..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~ 236 (296)
T 1j1i_A 157 DFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVV 236 (296)
T ss_dssp CSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSS
T ss_pred cCCchHHHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEECCCccc
Confidence 000001111000 00 000 00122346788899999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 725 HFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 725 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
|+..+..+.+.+ .+.++++++++||.+ ..+.++++.+.+.+||.+.
T Consensus 237 ~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 282 (296)
T 1j1i_A 237 PVETAYKFLDLI----DDSWGYIIPHCGHWA-MIEHPEDFANATLSFLSLR 282 (296)
T ss_dssp CHHHHHHHHHHC----TTEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHC----CCCEEEEECCCCCCc-hhcCHHHHHHHHHHHHhcc
Confidence 998888777664 467999999999986 4567889999999999875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-15 Score=165.34 Aligned_cols=291 Identities=12% Similarity=0.056 Sum_probs=189.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++||| ++.+++....+ ..|++||+++++..+..... . ...+...+..+.|+|
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~----~~i~~~d~~~g~~~~~~~~~-------------~-----~~~~~~~v~~~~~~~-- 179 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLED----EGMDVLDINSGQTVRLSPPE-------------K-----YKKKLGFVETISIPE-- 179 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTS----SSEEEEETTTCCEEEECCCH-------------H-----HHTTCCEEEEEEEGG--
T ss_pred ceEEEEeC-CCeEEEEeCCC----CeEEEEECCCCeEeeecCcc-------------c-----ccccCCceeEEEEcC--
Confidence 46889999 55566665433 36999999998876544210 0 011223577889999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
||+.++.. .++.|++||+.+++....+... ...+..+.|+|||+.+++.. ++.|+++|+.+++..........
T Consensus 180 -~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-- 255 (433)
T 3bws_A 180 -HNELWVSQMQANAVHVFDLKTLAYKATVDLT-GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL-- 255 (433)
T ss_dssp -GTEEEEEEGGGTEEEEEETTTCCEEEEEECS-SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE--
T ss_pred -CCEEEEEECCCCEEEEEECCCceEEEEEcCC-CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC--
Confidence 99877766 5688999999988776344322 23477899999999987776 35799999998876544332211
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
...++|+|||+.|+.......... .....|++||+.
T Consensus 256 ----------------~~~~~~~~~g~~l~~~~~~~~~~~----------------------------~~dg~i~~~d~~ 291 (433)
T 3bws_A 256 ----------------PRGLLLSKDGKELYIAQFSASNQE----------------------------SGGGRLGIYSMD 291 (433)
T ss_dssp ----------------EEEEEECTTSSEEEEEEEESCTTC----------------------------SCCEEEEEEETT
T ss_pred ----------------ceEEEEcCCCCEEEEEECCCCccc----------------------------cCCCeEEEEECC
Confidence 347889999999988765432110 012578999999
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLD 373 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 373 (776)
+++..... ........++|+|||+.+++... .+..|++||+++++............ .-.|+|
T Consensus 292 ~~~~~~~~---------~~~~~~~~~~~~~~g~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~---~~~~s~-- 354 (433)
T 3bws_A 292 KEKLIDTI---------GPPGNKRHIVSGNTENKIYVSDM---CCSKIEVYDLKEKKVQKSIPVFDKPN---TIALSP-- 354 (433)
T ss_dssp TTEEEEEE---------EEEECEEEEEECSSTTEEEEEET---TTTEEEEEETTTTEEEEEEECSSSEE---EEEECT--
T ss_pred CCcEEeec---------cCCCCcceEEECCCCCEEEEEec---CCCEEEEEECCCCcEEEEecCCCCCC---eEEEcC--
Confidence 88765542 22335678999999987766543 34469999999887665544322211 111222
Q ss_pred CCccccCCeEEEEe-ccCCc------------eEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCcee
Q 004067 374 KGVTKYSGGFIWAS-EKTGF------------RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 374 ~~~~~~~~~~~~~s-~~~g~------------~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
++..++++ ...+. ..|++||+.+++..........+..+ .|+|||+.|++....++. +
T Consensus 355 ------dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~d~~--i 425 (433)
T 3bws_A 355 ------DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGL-DVSPDNRYLVISDFLDHQ--I 425 (433)
T ss_dssp ------TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEE-EECTTSCEEEEEETTTTE--E
T ss_pred ------CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceE-EEcCCCCEEEEEECCCCe--E
Confidence 23344444 33221 28999999887755444333344554 499999988877654543 6
Q ss_pred eEEEEE
Q 004067 441 HLYCAK 446 (776)
Q Consensus 441 ~l~~~~ 446 (776)
.+|.++
T Consensus 426 ~v~~~~ 431 (433)
T 3bws_A 426 RVYRRD 431 (433)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 777653
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=167.66 Aligned_cols=233 Identities=13% Similarity=0.129 Sum_probs=151.5
Q ss_pred ccCCCCceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC---cEEEE
Q 004067 518 RLQLEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG---ILVWK 593 (776)
Q Consensus 518 ~~~~~~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G---~~v~~ 593 (776)
...++..+.+++.+. .|..+.+++|.|++.. ..+++|+|+++||++..... ..| ........++.| ++|++
T Consensus 12 ~~~~~~~~~~~~~s~~~g~~~~~~v~~P~~~~-~~~~~Pvl~~lhG~~~~~~~-~~~---~~~~~~~~~~~g~~~~ivV~ 86 (275)
T 2qm0_A 12 QIITSNTEQWKMYSKLEGKEYQIHISKPKQPA-PDSGYPVIYVLDGNAFFQTF-HEA---VKIQSVRAEKTGVSPAIIVG 86 (275)
T ss_dssp CCCCTTEEEEEEECTTTCCEEEEEEECCSSCC-CTTCEEEEEEESHHHHHHHH-HHH---HHHHGGGHHHHCCCCCEEEE
T ss_pred ceecCCceEEEEEecCCCCEEEEEEECCCCCC-CCCCccEEEEecChHHHHHH-HHH---HHHHhhcchhcCCCCeEEEE
Confidence 445778889999986 6899999999998863 23689999999997532211 011 011112234567 99999
Q ss_pred ECCCCCCCCch-----hhhhh---------h-h---hccC-CccHHHHH--HHHHHHHHcCCCCCCcEEEEeechHHHHH
Q 004067 594 LDNRGTARRGL-----KFEAS---------I-K---HNCG-RIDAEDQL--TGAEWLIKQGLAKVGHIGLYGWSYGGYLS 652 (776)
Q Consensus 594 ~d~rg~g~~~~-----~~~~~---------~-~---~~~~-~~~~~D~~--~~i~~l~~~~~id~~~i~l~G~S~GG~~a 652 (776)
+|+|+.+.++. ++... . . ...+ ...+.+.+ ..+.++.++..+|.++++|+||||||+++
T Consensus 87 i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a 166 (275)
T 2qm0_A 87 VGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFA 166 (275)
T ss_dssp EECSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHH
T ss_pred ECCCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHH
Confidence 99997532211 01000 0 0 0011 01223322 33445555556788899999999999999
Q ss_pred HHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHH
Q 004067 653 AITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL 732 (776)
Q Consensus 653 ~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~ 732 (776)
+.++.++|+.|+++++.+|...|.... +... .+.+... ........|+++++|+.|..++..++.++
T Consensus 167 ~~~~~~~p~~f~~~~~~s~~~~~~~~~------~~~~----~~~~~~~---~~~~~~~~~~~l~~G~~D~~~~~~~~~~~ 233 (275)
T 2qm0_A 167 LHILFTNLNAFQNYFISSPSIWWNNKS------VLEK----EENLIIE---LNNAKFETGVFLTVGSLEREHMVVGANEL 233 (275)
T ss_dssp HHHHHHCGGGCSEEEEESCCTTHHHHG------GGGG----TTHHHHH---HHTCSSCEEEEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHhCchhhceeEEeCceeeeChHH------HHHH----HHHHHhh---hcccCCCceEEEEeCCcccchhhHHHHHH
Confidence 999999999999999999987553210 0000 0001000 00234457999999999998889999999
Q ss_pred HHHH---HHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 733 INAL---VAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 733 ~~~l---~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
++.| ++.+.++++.++|+++|+.. ....+...++||
T Consensus 234 ~~~L~~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 234 SERLLQVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp HHHHHHCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred HHHHHhcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 9999 45677899999999999652 233345556665
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=175.17 Aligned_cols=233 Identities=13% Similarity=0.087 Sum_probs=150.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc-----ccccccchhhhH---HHHhCCcEEEEECCCC-CCCCc
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC-----DSWINTVDMRAQ---YLRSKGILVWKLDNRG-TARRG 603 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~-----~~~~~~~~~~~~---~l~~~G~~v~~~d~rg-~g~~~ 603 (776)
+|..+++..+.+.+. .+.|+||++||.+++.... ..| |..++. .|++.||.|+++|+|| +|++.
T Consensus 42 ~g~~l~y~~~g~~~~----~~~~~vvllHG~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~ 114 (377)
T 2b61_A 42 SYINVAYQTYGTLND----EKNNAVLICHALTGDAEPYFDDGRDGW---WQNFMGAGLALDTDRYFFISSNVLGGCKGTT 114 (377)
T ss_dssp CSEEEEEEEESCCCT----TCCCEEEEECCTTCCSCSCCSSSCCCT---TGGGEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred cceeEEEEecccccc----cCCCeEEEeCCCCCccccccccccchh---hhhccCcccccccCCceEEEecCCCCCCCCC
Confidence 455677777765432 2358999999987765420 001 232332 3667899999999999 57664
Q ss_pred hhhhh-hh-----hhccCCccHHHHHHHHHHHHHcCCCCCCcEE-EEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 604 LKFEA-SI-----KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 604 ~~~~~-~~-----~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
..... .. ...+....++++.+.+..+++.. +.+++. |+||||||.+++.+|.++|++++++|+.++.....
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~l--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 192 (377)
T 2b61_A 115 GPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFS 192 (377)
T ss_dssp CTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCC
T ss_pred CCcccCccccccccccCCcccHHHHHHHHHHHHHHc--CCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCcccc
Confidence 32110 00 01111345778888887777654 446887 99999999999999999999999999998864321
Q ss_pred ccc--------------cc--------------------------------ccccccCCCC---------CCccch----
Q 004067 677 GYD--------------TF--------------------------------YTEKYMGLPS---------EDPVGY---- 697 (776)
Q Consensus 677 ~~~--------------~~--------------------------------~~~~~~~~~~---------~~~~~~---- 697 (776)
... .. +...+..... .....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (377)
T 2b61_A 193 AEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQ 272 (377)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 000 00 0000000000 000000
Q ss_pred --------------------hc-------CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEec-
Q 004067 698 --------------------EY-------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP- 749 (776)
Q Consensus 698 --------------------~~-------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~- 749 (776)
.. .+....+.++++|+|+++|++|.++++..+....+.+.+...+.++++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 352 (377)
T 2b61_A 273 GKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPS 352 (377)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred hhhhccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCcccCCccchHHHHHHHHhcCCCceEEEeCC
Confidence 00 01234567888999999999999999966556666666666778999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 750 DERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 750 ~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++||.+ ..+..+++.+.+.+||.++
T Consensus 353 ~~gH~~-~~e~p~~~~~~i~~fl~~~ 377 (377)
T 2b61_A 353 DYGHDA-FLVDYDQFEKRIRDGLAGN 377 (377)
T ss_dssp TTGGGH-HHHCHHHHHHHHHHHHHTC
T ss_pred CCCchh-hhcCHHHHHHHHHHHHhcC
Confidence 999986 4456789999999999763
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=165.21 Aligned_cols=183 Identities=15% Similarity=0.061 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhC--CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
|+|||+||..++.. .| ....+.++++++ +|.|++||++|+|.+ ..+.++.+...
T Consensus 3 ptIl~lHGf~ss~~---s~--k~~~l~~~~~~~~~~~~v~~pdl~~~g~~-------------------~~~~l~~~~~~ 58 (202)
T 4fle_A 3 STLLYIHGFNSSPS---SA--KATTFKSWLQQHHPHIEMQIPQLPPYPAE-------------------AAEMLESIVMD 58 (202)
T ss_dssp CEEEEECCTTCCTT---CH--HHHHHHHHHHHHCTTSEEECCCCCSSHHH-------------------HHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCC---cc--HHHHHHHHHHHcCCCcEEEEeCCCCCHHH-------------------HHHHHHHHHHh
Confidence 89999999654432 11 122345666665 599999999987521 22223333322
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccc-cccCCCCCCc--cchhcCChhhhhccC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE-KYMGLPSEDP--VGYEYSSVMHHVHKM 709 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~i 709 (776)
. +.++|+|+|+||||++|+.+|.+++....+++...+............. .+...+.... .............++
T Consensus 59 ~--~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (202)
T 4fle_A 59 K--AGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQNPYTGQKYVLESRHIYDLKAMQIEKLES 136 (202)
T ss_dssp H--TTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEECTTTCCEEEECHHHHHHHHTTCCSSCSC
T ss_pred c--CCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhccccccccccchHHHHHHHHhhhhhhhcc
Confidence 1 4569999999999999999999999876666555443221110000000 0000000000 000111222345667
Q ss_pred CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
++|+|++||++|++||++++.++++ ++++.++++++|.+. ..+++++.+.+||+
T Consensus 137 ~~P~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~g~~H~~~---~~~~~~~~I~~FL~ 190 (202)
T 4fle_A 137 PDLLWLLQQTGDEVLDYRQAVAYYT-------PCRQTVESGGNHAFV---GFDHYFSPIVTFLG 190 (202)
T ss_dssp GGGEEEEEETTCSSSCHHHHHHHTT-------TSEEEEESSCCTTCT---TGGGGHHHHHHHHT
T ss_pred CceEEEEEeCCCCCCCHHHHHHHhh-------CCEEEEECCCCcCCC---CHHHHHHHHHHHHh
Confidence 7899999999999999998877753 468999999999874 34567889999985
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-15 Score=159.01 Aligned_cols=289 Identities=13% Similarity=0.039 Sum_probs=189.2
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+..+.. ..|.+||+.+++....... +...+..+.|+|
T Consensus 35 v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~-----------------------h~~~v~~~~~~~-- 84 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKD-----SSASVWYSLNGERLGTLDG-----------------------HTGTIWSIDVDC-- 84 (369)
T ss_dssp EEEEEECTTSCEEEEEESS-----SCEEEEETTTCCEEEEECC-----------------------CSSCEEEEEECT--
T ss_pred EEEEEEcCCCCEEEEEeCC-----CEEEEEeCCCchhhhhhhh-----------------------cCCcEEEEEEcC--
Confidence 4789999999999976542 3699999998876544431 124688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC------CcEEEEecCCCceeE-Eee-
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD------CELHVLNLLINEQRQ-LTH- 207 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~------~~l~~~~l~~g~~~~-lt~- 207 (776)
||+.|+.. .++.|++||+.+++....+. .. ..+..+.|+|||+.++.... +.|.+|++.++.... +..
T Consensus 85 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 85 -FTKYCVTGSADYSIKLWDVSNGQCVATWK-SP-VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp -TSSEEEEEETTTEEEEEETTTCCEEEEEE-CS-SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEEEEee-cC-CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 99999876 67889999999988773443 33 34888999999999999876 479999988664321 111
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.........+. .....+..+.|+|||+.|+....+ ..|
T Consensus 162 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d------------------------------------g~i 199 (369)
T 3zwl_B 162 SEEPIHKIITH------EGLDAATVAGWSTKGKYIIAGHKD------------------------------------GKI 199 (369)
T ss_dssp CSSCSEEEECC------TTCCCEEEEEECGGGCEEEEEETT------------------------------------SEE
T ss_pred ccceeeeccCC------cCccceeEEEEcCCCCEEEEEcCC------------------------------------CEE
Confidence 11100000000 011135678999999988876532 358
Q ss_pred EEEEcCC-CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecc
Q 004067 288 GVVSAAG-GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 366 (776)
Q Consensus 288 ~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 366 (776)
++||+.+ ++.... . ..+...+..+.|+|||+.|+... .+..|.+||+.++..............
T Consensus 200 ~i~d~~~~~~~~~~-~-------~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~~~--- 264 (369)
T 3zwl_B 200 SKYDVSNNYEYVDS-I-------DLHEKSISDMQFSPDLTYFITSS----RDTNSFLVDVSTLQVLKKYETDCPLNT--- 264 (369)
T ss_dssp EEEETTTTTEEEEE-E-------ECCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEEEEEECSSCEEE---
T ss_pred EEEECCCCcEeEEE-E-------ecCCCceeEEEECCCCCEEEEec----CCceEEEEECCCCceeeeecCCCCcee---
Confidence 9999988 343322 1 34566789999999999887765 345799999999887666554333111
Q ss_pred cccccCCCCccccCCeEEEEecc------------CCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEK------------TGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~------------~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
..|+|. +.+++.... .+...+.+|+...++. ..+..+...+..+. |+|+|+.|+..+
T Consensus 265 ~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~- 334 (369)
T 3zwl_B 265 AVITPL--------KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVA-ISPQGTSYASGG- 334 (369)
T ss_dssp EEECSS--------SSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEE-ECTTSSEEEEEE-
T ss_pred EEecCC--------CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEE-ECCCCCEEEEEc-
Confidence 123332 223333222 2233789999876654 45555556666655 999999655544
Q ss_pred cCCCceeeEEEEEe
Q 004067 434 LDGPLESHLYCAKL 447 (776)
Q Consensus 434 ~~~~~~~~l~~~~~ 447 (776)
.++ .+.+|.++-
T Consensus 335 ~dg--~v~iw~~~~ 346 (369)
T 3zwl_B 335 EDG--FIRLHHFEK 346 (369)
T ss_dssp TTS--EEEEEEECH
T ss_pred CCC--eEEEEECcc
Confidence 343 378888763
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-16 Score=168.64 Aligned_cols=331 Identities=8% Similarity=0.016 Sum_probs=203.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
.+.++|||||++|+..+.. ..|++||..+++....... ........|+|
T Consensus 59 ~~~~~~s~~g~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~------------------------~~~~~~~~~~~-- 107 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLD-----GHDFLFNTIIRDGSKMLKR------------------------ADYTAVDTAKL-- 107 (420)
T ss_dssp CTTCEEEEEETTEEEEEET-----TEEEEEECCSEETTTTSCS------------------------CCEEEEEEECS--
T ss_pred ccceeeeecCCeEEEEEcC-----CcEEEEEecccceeeEEec------------------------CCceEEEEEec--
Confidence 3689999999999977653 4699999987764322210 11233446888
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||+.|+.. .++.|.+||+.+++....+.... ..+..+.|+|||+.|+..+. +.|.+|++.+++..........
T Consensus 108 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~--- 182 (420)
T 3vl1_A 108 -QMRRFILGTTEGDIKVLDSNFNLQREIDQAHV-SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA--- 182 (420)
T ss_dssp -SSCEEEEEETTSCEEEECTTSCEEEEETTSSS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS---
T ss_pred -CCCEEEEEECCCCEEEEeCCCcceeeeccccc-CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC---
Confidence 99999987 67899999999988773333433 35889999999999988875 5799999998865443222111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.+..+.|+|||+.|+..+.+ ..|.+||+.+
T Consensus 183 --------------~v~~~~~~~~~~~l~s~~~d------------------------------------~~v~iwd~~~ 212 (420)
T 3vl1_A 183 --------------TVTDIAIIDRGRNVLSASLD------------------------------------GTIRLWECGT 212 (420)
T ss_dssp --------------CEEEEEEETTTTEEEEEETT------------------------------------SCEEEEETTT
T ss_pred --------------cEEEEEEcCCCCEEEEEcCC------------------------------------CcEEEeECCC
Confidence 14578999999999876643 2368888887
Q ss_pred CceEEEEcccCCC-C---------------CCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec
Q 004067 295 GPVSWMDLQCGGT-D---------------QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 295 ~~~~~l~~~~~~~-~---------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 358 (776)
++....-.....+ . .......+..++|+|||+.++... .+..|.+||+.++.........
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH----VSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE----TTSCEEEEETTTCCEEEEECCT
T ss_pred CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc----CCCeEEEEECCCCceeEEcccc
Confidence 7654432110000 0 000123344567899999887665 3445999999888754433221
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce--eecccc-CCeEEEEEEeecCCCcEEEEEEccC
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITE-GDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~--~~~lt~-~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
....+ ..-.|+| ++..++++...+| .|++||+.+++ ...+.. +...+... ++++++ +++++..+
T Consensus 289 ~~~~v-~~~~~~~-------~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~l~s~~~d 355 (420)
T 3vl1_A 289 FTCSC-NSLTVDG-------NNANYIYAGYENG--MLAQWDLRSPECPVGEFLINEGTPINNV--YFAAGA-LFVSSGFD 355 (420)
T ss_dssp TSSCE-EEEEECS-------SCTTEEEEEETTS--EEEEEETTCTTSCSEEEEESTTSCEEEE--EEETTE-EEEEETTT
T ss_pred cCCCc-eeEEEeC-------CCCCEEEEEeCCC--eEEEEEcCCCcCchhhhhccCCCCceEE--EeCCCC-EEEEecCC
Confidence 11110 0011222 1222677777777 89999987653 344544 33344444 445676 45555555
Q ss_pred CCceeeEEEEEeCCCCCCc----cccceeecCC-CCeEEEEEcCCcC---EEEEEeeCCCCCCEEEEEEcC
Q 004067 436 GPLESHLYCAKLYPDWNHT----LEAPVKLTNG-KGKHVAVLDHNMR---NFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~----~~~~~~l~~~-~~~~~~~~spdg~---~l~~~~~~~~~~~~i~~~~~~ 498 (776)
+ .+.+|.+.. ..... ......+... ..+..+.|+||++ .++.+.+. +.+.+|+..
T Consensus 356 ~--~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~----g~~~~~~~~ 418 (420)
T 3vl1_A 356 T--SIKLDIISD--PESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN----NFCALYNLS 418 (420)
T ss_dssp E--EEEEEEECC--TTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT----TEEEEEESC
T ss_pred c--cEEEEeccC--CCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC----ceEEEEecc
Confidence 3 478888764 11100 0112222222 3466789999999 77766543 356666653
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-17 Score=154.85 Aligned_cols=182 Identities=10% Similarity=0.030 Sum_probs=122.3
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhC-CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
+.|+||++||++++......|. ..++..|++. ||.|+++|+||++.. ++...++.+.+
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~---~~~~~~l~~~~g~~vi~~d~~g~~~~------------------~~~~~~~~~~~ 61 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWY---GWVKKELEKIPGFQCLAKNMPDPITA------------------RESIWLPFMET 61 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTH---HHHHHHHTTSTTCCEEECCCSSTTTC------------------CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCcccchHH---HHHHHHHhhccCceEEEeeCCCCCcc------------------cHHHHHHHHHH
Confidence 4589999999876531011221 1146778777 999999999975311 13334444444
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG 711 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 711 (776)
...+ .++++++||||||.+++.++.++| ++++++.+|..............+... ......+.++..
T Consensus 62 ~l~~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 128 (194)
T 2qs9_A 62 ELHC-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDENERASGYFTR----------PWQWEKIKANCP 128 (194)
T ss_dssp TSCC-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHHHHHTSTTSS----------CCCHHHHHHHCS
T ss_pred HhCc-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhhhHHHhhhcc----------cccHHHHHhhCC
Confidence 4322 268999999999999999999998 899999888654211000000111111 112234555678
Q ss_pred cEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 712 KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 712 P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
|+|+++|++|..+|+..+..+.+.+ +.+++++++++|.+. .+..+ .+..+.+||++.
T Consensus 129 p~lii~G~~D~~vp~~~~~~~~~~~-----~~~~~~~~~~gH~~~-~~~p~-~~~~~~~fl~~~ 185 (194)
T 2qs9_A 129 YIVQFGSTDDPFLPWKEQQEVADRL-----ETKLHKFTDCGHFQN-TEFHE-LITVVKSLLKVP 185 (194)
T ss_dssp EEEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEESSCTTSCS-SCCHH-HHHHHHHHHTCC
T ss_pred CEEEEEeCCCCcCCHHHHHHHHHhc-----CCeEEEeCCCCCccc-hhCHH-HHHHHHHHHHhh
Confidence 9999999999999999999888877 348999999999873 44454 455666999764
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-17 Score=164.04 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=151.0
Q ss_pred CCceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 522 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 522 ~~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
.+.+.+++.+. .|..+.++ |.|.+ + |+||++||+++... ...|... ..+.+.+++.||+|+++|+++++
T Consensus 9 ~~~~~~~~~S~~~~~~~~~~-~~P~~------~-p~vvllHG~~~~~~-~~~w~~~-~~~~~~~~~~~~~vv~pd~~~~~ 78 (280)
T 1r88_A 9 APYENLMVPSPSMGRDIPVA-FLAGG------P-HAVYLLDAFNAGPD-VSNWVTA-GNAMNTLAGKGISVVAPAGGAYS 78 (280)
T ss_dssp CCCEEEEEEETTTTEEEEEE-EECCS------S-SEEEEECCSSCCSS-SCHHHHT-SCHHHHHTTSSSEEEEECCCTTS
T ss_pred CCEEEEEEECcccCCcceEE-EeCCC------C-CEEEEECCCCCCCC-hhhhhhc-ccHHHHHhcCCeEEEEECCCCCC
Confidence 46788888875 67888888 77754 1 79999999743211 1223211 11356677889999999997653
Q ss_pred CCchhhhhhhhhccCCccHHH-H-HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc
Q 004067 601 RRGLKFEASIKHNCGRIDAED-Q-LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D-~-~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 678 (776)
.+.. +.... .+ ...+ + ...+.++.++..++.++++|+|+||||++|+.++.++|++|+++++.+|..++...
T Consensus 79 ~~~~-~~~~~---~~--~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~ 152 (280)
T 1r88_A 79 MYTN-WEQDG---SK--QWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNT 152 (280)
T ss_dssp TTSB-CSSCT---TC--BHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSH
T ss_pred ccCC-CCCCC---CC--cHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCc
Confidence 2211 10000 01 1211 1 23344444434567789999999999999999999999999999999998775432
Q ss_pred cc-------------cccccccCCCCCCccchhcCChhhhhccC---CCcEEEEe----cCCCCc-------cChHHHHH
Q 004067 679 DT-------------FYTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVH----GMIDEN-------VHFRHTAR 731 (776)
Q Consensus 679 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~P~lii~----G~~D~~-------v~~~~~~~ 731 (776)
.. ......++.+. ...+...++...+.++ ..|+++.+ |+.|.. ++...+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~ 230 (280)
T 1r88_A 153 TTNGAIAAGMQQFGGVDTNGMWGAPQ--LGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRM 230 (280)
T ss_dssp HHHHHHHHHHHHHHCCCTHHHHCCGG--GSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHH
T ss_pred cchhhHHHHhhhccccchhhhcCCCc--hhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHH
Confidence 10 00011112221 1234555666555555 47999999 999984 58889999
Q ss_pred HHHHHHHCC-CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 732 LINALVAAR-KPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 732 ~~~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++.|++.+ .++++.++++++|.+. .....+...+.||.
T Consensus 231 ~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~~~ 270 (280)
T 1r88_A 231 FYNQYRSVGGHNGHFDFPASGDNGWG---SWAPQLGAMSGDIV 270 (280)
T ss_dssp HHHHHHHTTCCSEEEECCSSCCSSHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcceEEEecCCCCcChh---HHHHHHHHHHHHHH
Confidence 999999999 9999999888899753 23333444555554
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-17 Score=171.72 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=89.5
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|..+++..+.|++ +..|+||++||.+++.. .|..++..|+++||.|+++|+||+|.+......
T Consensus 10 ~~g~~l~y~~~G~~~-----~~~~~vv~~hG~~~~~~-------~~~~~~~~l~~~g~~vi~~d~~g~g~s~~~~~~--- 74 (356)
T 2e3j_A 10 CRGTRIHAVADSPPD-----QQGPLVVLLHGFPESWY-------SWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQ--- 74 (356)
T ss_dssp ETTEEEEEEEECCTT-----CCSCEEEEECCTTCCGG-------GGTTTHHHHHHTTCEEEEECCTTSTTSCCCCSG---
T ss_pred cCCeEEEEEEecCCC-----CCCCEEEEECCCCCcHH-------HHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCcc---
Confidence 478889999988753 23478999999876543 234457888889999999999999988643210
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
......++.+.+..+++.. +.++++++||||||.+++.++.++|++++++|+.++..
T Consensus 75 ---~~~~~~~~~~~~~~~~~~l--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 75 ---KAYRIKELVGDVVGVLDSY--GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp ---GGGSHHHHHHHHHHHHHHT--TCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred ---cccCHHHHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 0112444444444444432 45689999999999999999999999999999877543
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=177.16 Aligned_cols=203 Identities=13% Similarity=0.157 Sum_probs=137.2
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh--------
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF-------- 606 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~-------- 606 (776)
..+++....|... .+++|+||++||+++... .+..+++.|+++||.|+++|+||+|.+....
T Consensus 82 ~~~p~~~~~P~~~---~~~~P~Vv~~HG~~~~~~-------~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~ 151 (383)
T 3d59_A 82 MTTPANWNSPLRP---GEKYPLVVFSHGLGAFRT-------LYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAE 151 (383)
T ss_dssp CEESSEETCCBCC---SSCEEEEEEECCTTCCTT-------TTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHH
T ss_pred eeeccccCCCccc---CCCCCEEEEcCCCCCCch-------HHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccc
Confidence 4444444444332 147899999999876543 2345688999999999999999988753200
Q ss_pred -------------hh-h--hhhccCCccHHHHHHHHHHHHH--------------------cCCCCCCcEEEEeechHHH
Q 004067 607 -------------EA-S--IKHNCGRIDAEDQLTGAEWLIK--------------------QGLAKVGHIGLYGWSYGGY 650 (776)
Q Consensus 607 -------------~~-~--~~~~~~~~~~~D~~~~i~~l~~--------------------~~~id~~~i~l~G~S~GG~ 650 (776)
.. . ..........+|+..+++++.+ ...+|.++|+++||||||.
T Consensus 152 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~ 231 (383)
T 3d59_A 152 IGDKSWLYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGA 231 (383)
T ss_dssp HTCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHH
T ss_pred cCCceeeeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHH
Confidence 00 0 0000001125688889998876 3456788999999999999
Q ss_pred HHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHH
Q 004067 651 LSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 730 (776)
Q Consensus 651 ~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 730 (776)
+++.++.+.+ +++++|+.+|... +.. ...+.+++.|+|++||++|..+ .. .
T Consensus 232 ~a~~~a~~~~-~v~a~v~~~~~~~---------------p~~----------~~~~~~i~~P~Lii~g~~D~~~--~~-~ 282 (383)
T 3d59_A 232 TVIQTLSEDQ-RFRCGIALDAWMF---------------PLG----------DEVYSRIPQPLFFINSEYFQYP--AN-I 282 (383)
T ss_dssp HHHHHHHHCT-TCCEEEEESCCCT---------------TCC----------GGGGGSCCSCEEEEEETTTCCH--HH-H
T ss_pred HHHHHHhhCC-CccEEEEeCCccC---------------CCc----------hhhhccCCCCEEEEecccccch--hh-H
Confidence 9999988765 5899999877421 100 0224677899999999999754 22 2
Q ss_pred HHHHHHHHCCCCeEEEEecCCCCCCCC------------------CCcH----HHHHHHHHHHHHHhC
Q 004067 731 RLINALVAARKPYEILIFPDERHMPRR------------------HRDR----IYMEERIWEFIERTL 776 (776)
Q Consensus 731 ~~~~~l~~~~~~~~~~~~~~~~H~~~~------------------~~~~----~~~~~~~~~fl~~~l 776 (776)
+..+.+.+.+.+.+++++++++|.+.. .... ..+.+.+.+||+++|
T Consensus 283 ~~~~~l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L 350 (383)
T 3d59_A 283 IKMKKCYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHL 350 (383)
T ss_dssp HHHHTTCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHc
Confidence 334566566788999999999998521 1122 334457999999875
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-17 Score=159.62 Aligned_cols=212 Identities=14% Similarity=0.060 Sum_probs=132.9
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh--CCcEEEEECCCCCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRGTAR 601 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~d~rg~g~ 601 (776)
.+.+.|.+ ..+.+.++.|.. +..++||++||.+++.. .| ..++..+.. .++.+++|+-+-...
T Consensus 15 ~~~~~~~~---~~l~y~ii~P~~-----~~~~~VI~LHG~G~~~~---dl----~~l~~~l~~~~~~~~~i~P~Ap~~~~ 79 (246)
T 4f21_A 15 TENLYFQS---NAMNYELMEPAK-----QARFCVIWLHGLGADGH---DF----VDIVNYFDVSLDEIRFIFPHADIIPV 79 (246)
T ss_dssp -----------CCCCEEEECCSS-----CCCEEEEEEEC--CCCC---CG----GGGGGGCCSCCTTEEEEEECGGGSCT
T ss_pred cceEEEec---CCcCceEeCCCC-----cCCeEEEEEcCCCCCHH---HH----HHHHHHhhhcCCCeEEEeCCCCcccc
Confidence 34455554 247788888876 34579999999665432 22 223444432 368889987532110
Q ss_pred C------chhhhh-------hhhhccCCccHHHHHHHHHHHHH---cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEE
Q 004067 602 R------GLKFEA-------SIKHNCGRIDAEDQLTGAEWLIK---QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 665 (776)
Q Consensus 602 ~------~~~~~~-------~~~~~~~~~~~~D~~~~i~~l~~---~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~ 665 (776)
. +..|.. ..........+....+.+..+++ ...++.+||++.|+|+||++++.++.++|+.+++
T Consensus 80 ~~~~~~~~~~Wf~~~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~ 159 (246)
T 4f21_A 80 TINMGMQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGG 159 (246)
T ss_dssp TTHHHHHHHSCTTCCCC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCE
T ss_pred ccCCCCCcccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCcccccc
Confidence 0 000100 00000011112333333333332 2458999999999999999999999999999999
Q ss_pred EEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE
Q 004067 666 AVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 745 (776)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 745 (776)
++++++...... .+.. .. .....+.|++++||+.|++||+..++++++.|++.|.++++
T Consensus 160 ~i~~sG~lp~~~-------~~~~----------~~----~~~~~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~ 218 (246)
T 4f21_A 160 IMALSTYLPAWD-------NFKG----------KI----TSINKGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEY 218 (246)
T ss_dssp EEEESCCCTTHH-------HHST----------TC----CGGGTTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEE
T ss_pred ceehhhccCccc-------cccc----------cc----cccccCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 999988642110 0000 00 01123479999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 746 LIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 746 ~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
..||+.||.+. .+....+.+||++.|
T Consensus 219 ~~y~g~gH~i~-----~~~l~~~~~fL~k~l 244 (246)
T 4f21_A 219 KHYVGMQHSVC-----MEEIKDISNFIAKTF 244 (246)
T ss_dssp EEESSCCSSCC-----HHHHHHHHHHHHHHT
T ss_pred EEECCCCCccC-----HHHHHHHHHHHHHHh
Confidence 99999999873 344678999999876
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=187.96 Aligned_cols=225 Identities=11% Similarity=0.025 Sum_probs=151.6
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+...+.+.||.++++.... +.|+||++||++++.. .|..++..|+++||.|+++|+||+|.
T Consensus 235 ~~~~~~~~~~~dg~~l~~~~~g---------~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~D~~G~G~ 298 (555)
T 3i28_A 235 SDMSHGYVTVKPRVRLHFVELG---------SGPAVCLCHGFPESWY-------SWRYQIPALAQAGYRVLAMDMKGYGE 298 (555)
T ss_dssp GGSEEEEEEEETTEEEEEEEEC---------SSSEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTT
T ss_pred cccceeEEEeCCCcEEEEEEcC---------CCCEEEEEeCCCCchh-------HHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 3456677777799999887764 2378999999877644 34456788999999999999999998
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc---
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--- 678 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~--- 678 (776)
+...... ......++.+.+..+++.. +.++++++||||||.+++.++.++|++++++|+.++.......
T Consensus 299 S~~~~~~------~~~~~~~~~~d~~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 370 (555)
T 3i28_A 299 SSAPPEI------EEYCMEVLCKEMVTFLDKL--GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMS 370 (555)
T ss_dssp SCCCSCG------GGGSHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCTTSC
T ss_pred CCCCCCc------ccccHHHHHHHHHHHHHHc--CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCCCCCCcccc
Confidence 8643210 1122444444444444332 3468999999999999999999999999999988764321000
Q ss_pred -------------------------------cccccccc--------------------cCCCCC-------Cc---cch
Q 004067 679 -------------------------------DTFYTEKY--------------------MGLPSE-------DP---VGY 697 (776)
Q Consensus 679 -------------------------------~~~~~~~~--------------------~~~~~~-------~~---~~~ 697 (776)
...+...+ ...+.. .. ..+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (555)
T 3i28_A 371 PLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFY 450 (555)
T ss_dssp HHHHHHTCGGGHHHHHHHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTCCHHHHHHH
T ss_pred hHHHHhcCCccchhHHhhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccccCHHHHHHH
Confidence 00000000 000000 00 000
Q ss_pred ----hc------------------CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 698 ----EY------------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 698 ----~~------------------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
.. .+....+.++++|+|+++|++|..+|+..+..+.+.+ .+.++++++++||.+
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~ 526 (555)
T 3i28_A 451 VQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWI----PHLKRGHIEDCGHWT 526 (555)
T ss_dssp HHHHTTTTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTC----TTCEEEEETTCCSCH
T ss_pred HHHHhcccchhHHHHHHhccccchhhccccccccccCEEEEEeCCCCCcCHHHHHHHHhhC----CCceEEEeCCCCCCc
Confidence 00 0111234578899999999999999998887776654 567999999999976
Q ss_pred CCCCcHHHHHHHHHHHHHHh
Q 004067 756 RRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 756 ~~~~~~~~~~~~~~~fl~~~ 775 (776)
..+..+++.+.+.+||++.
T Consensus 527 -~~e~p~~~~~~i~~fl~~~ 545 (555)
T 3i28_A 527 -QMDKPTEVNQILIKWLDSD 545 (555)
T ss_dssp -HHHSHHHHHHHHHHHHHHH
T ss_pred -chhCHHHHHHHHHHHHHhc
Confidence 4567889999999999875
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-18 Score=169.56 Aligned_cols=203 Identities=14% Similarity=0.129 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+||++||.+++.. .| ..++..|++ +|.|+++|+||+|.|........ ....++++.+.+..+++.-
T Consensus 21 ~~vvllHG~~~~~~---~w----~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~~~----~~~~~~~~a~dl~~~l~~l- 87 (271)
T 1wom_A 21 ASIMFAPGFGCDQS---VW----NAVAPAFEE-DHRVILFDYVGSGHSDLRAYDLN----RYQTLDGYAQDVLDVCEAL- 87 (271)
T ss_dssp SEEEEECCTTCCGG---GG----TTTGGGGTT-TSEEEECCCSCCSSSCCTTCCTT----GGGSHHHHHHHHHHHHHHT-
T ss_pred CcEEEEcCCCCchh---hH----HHHHHHHHh-cCeEEEECCCCCCCCCCCccccc----ccccHHHHHHHHHHHHHHc-
Confidence 78999999766543 23 334566765 69999999999998864210000 0112444444444444432
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc----cccc----------------c-------ccccc
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG----YDTF----------------Y-------TEKYM 687 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~----~~~~----------------~-------~~~~~ 687 (776)
+.+++.++||||||.+++.+|.++|++++++|+.++...... +... + .....
T Consensus 88 -~~~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (271)
T 1wom_A 88 -DLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVL 166 (271)
T ss_dssp -TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 346899999999999999999999999999999877532110 0000 0 00000
Q ss_pred CCCCCC--ccc----h---------------hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEE
Q 004067 688 GLPSED--PVG----Y---------------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 746 (776)
Q Consensus 688 ~~~~~~--~~~----~---------------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 746 (776)
+.+... ... + ...+....+.++++|+|+++|++|..+++.....+.+.+ .+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~----~~~~~~ 242 (271)
T 1wom_A 167 NQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHL----PYSSLK 242 (271)
T ss_dssp CCTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSCHHHHHHHHHHS----SSEEEE
T ss_pred cCCCchHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCCHHHHHHHHHHC----CCCEEE
Confidence 111000 000 0 011222346788999999999999999988777776654 458999
Q ss_pred EecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 747 IFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 747 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+++++||.+ ..+.++++.+.+.+||.+++
T Consensus 243 ~i~~~gH~~-~~e~p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 243 QMEARGHCP-HMSHPDETIQLIGDYLKAHV 271 (271)
T ss_dssp EEEEESSCH-HHHCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCcCc-cccCHHHHHHHHHHHHHhcC
Confidence 999999976 55678899999999999874
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=168.40 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=133.5
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|..++..|++. |.|+++|+||+|.|...... .+.++++.+.+..+++..
T Consensus 17 ~~vvllHG~~~~~~-------~~~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~~~-------~~~~~~~~~dl~~~l~~l- 80 (269)
T 2xmz_A 17 QVLVFLHGFLSDSR-------TYHNHIEKFTDN-YHVITIDLPGHGEDQSSMDE-------TWNFDYITTLLDRILDKY- 80 (269)
T ss_dssp EEEEEECCTTCCGG-------GGTTTHHHHHTT-SEEEEECCTTSTTCCCCTTS-------CCCHHHHHHHHHHHHGGG-
T ss_pred CeEEEEcCCCCcHH-------HHHHHHHHHhhc-CeEEEecCCCCCCCCCCCCC-------ccCHHHHHHHHHHHHHHc-
Confidence 46999999877644 234457778765 99999999999988642110 234666666666666543
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc------------------cc---ccccccCC----
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------------------TF---YTEKYMGL---- 689 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------------------~~---~~~~~~~~---- 689 (776)
..+++.++||||||.+|+.+|.++|++++++|+.++........ .. +...+...
T Consensus 81 -~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (269)
T 2xmz_A 81 -KDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQ 159 (269)
T ss_dssp -TTSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTSGGGG
T ss_pred -CCCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHHHHhCcccc
Confidence 34689999999999999999999999999999988754321000 00 00000000
Q ss_pred -----CC------------CCcc----ch------hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCC
Q 004067 690 -----PS------------EDPV----GY------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 742 (776)
Q Consensus 690 -----~~------------~~~~----~~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 742 (776)
+. .... .+ ...+....+.++++|+|+++|++|..+++.... +.+. -.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~-~~~~----~~~ 234 (269)
T 2xmz_A 160 SQLELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKK-MANL----IPN 234 (269)
T ss_dssp GGGGSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHHHHHHH-HHHH----STT
T ss_pred ccccCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccCHHHHH-HHhh----CCC
Confidence 00 0000 00 001123356788899999999999998876543 4443 357
Q ss_pred eEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 743 YEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 743 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.++++++++||.+ ..+.++++.+.+.+||++.
T Consensus 235 ~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 235 SKCKLISATGHTI-HVEDSDEFDTMILGFLKEE 266 (269)
T ss_dssp EEEEEETTCCSCH-HHHSHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCh-hhcCHHHHHHHHHHHHHHh
Confidence 8999999999987 4567889999999999764
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=167.05 Aligned_cols=213 Identities=14% Similarity=0.109 Sum_probs=140.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|..+++.... ..|.||++||...+...... |...+..| ..+|.|+++|+||+|.|.....
T Consensus 13 ~g~~l~y~~~G---------~g~~vvllHG~~~~~~~~~~----w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~~----- 73 (282)
T 1iup_A 13 AGVLTNYHDVG---------EGQPVILIHGSGPGVSAYAN----WRLTIPAL-SKFYRVIAPDMVGFGFTDRPEN----- 73 (282)
T ss_dssp TTEEEEEEEEC---------CSSEEEEECCCCTTCCHHHH----HTTTHHHH-TTTSEEEEECCTTSTTSCCCTT-----
T ss_pred CCEEEEEEecC---------CCCeEEEECCCCCCccHHHH----HHHHHHhh-ccCCEEEEECCCCCCCCCCCCC-----
Confidence 67888887653 12579999995432211112 33345556 5689999999999998864311
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc----------ccc--
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG----------YDT-- 680 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~----------~~~-- 680 (776)
..+.++++.+.+..+++.. ..+++.|+||||||.+|+.+|.++|++++++|+.+|...... +..
T Consensus 74 --~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (282)
T 1iup_A 74 --YNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSI 149 (282)
T ss_dssp --CCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCH
T ss_pred --CCCCHHHHHHHHHHHHHHh--CCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcCCCcH
Confidence 0123556665555555543 346899999999999999999999999999999887542100 000
Q ss_pred -c---cccccc------------------CCCCCCccchhc-------------CChhhhhccCCCcEEEEecCCCCccC
Q 004067 681 -F---YTEKYM------------------GLPSEDPVGYEY-------------SSVMHHVHKMKGKLLLVHGMIDENVH 725 (776)
Q Consensus 681 -~---~~~~~~------------------~~~~~~~~~~~~-------------~~~~~~~~~i~~P~lii~G~~D~~v~ 725 (776)
. +...+. ..+. ....+.. ......+.++++|+|+++|++|..+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p 228 (282)
T 1iup_A 150 ENMRNLLDIFAYDRSLVTDELARLRYEASIQPG-FQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVP 228 (282)
T ss_dssp HHHHHHHHHHCSSGGGCCHHHHHHHHHHHTSTT-HHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSC
T ss_pred HHHHHHHHHhhcCcccCCHHHHHHHHhhccChH-HHHHHHHHHhccccccccccccchhhhhhcCCCEEEEecCCCCCCC
Confidence 0 000000 0000 0000000 00114567889999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 726 FRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 726 ~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+..+.++.+.+ .+.++++++++||.. ..+.++++.+.+.+||.+
T Consensus 229 ~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 229 LSSSLRLGELI----DRAQLHVFGRCGHWT-QIEQTDRFNRLVVEFFNE 272 (282)
T ss_dssp HHHHHHHHHHC----TTEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC----CCCeEEEECCCCCCc-cccCHHHHHHHHHHHHhc
Confidence 98887777664 567999999999986 556788999999999975
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=163.71 Aligned_cols=201 Identities=13% Similarity=0.100 Sum_probs=131.2
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|.||++||.+++.. .|..++..|++.||.|+++|+||+|.|..... ....++++.+.+..+++.
T Consensus 9 ~g~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~ 74 (264)
T 2wfl_A 9 QQKHFVLVHGGCLGAW-------IWYKLKPLLESAGHKVTAVDLSAAGINPRRLD-------EIHTFRDYSEPLMEVMAS 74 (264)
T ss_dssp CCCEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCccccc-------hHHHHHHHHHhCCCEEEEeecCCCCCCCCCcc-------cccCHHHHHHHHHHHHHH
Confidence 4478999999865543 34556788888999999999999998864211 012355555555545443
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc---cc------ccc-----ccccc---ccCCCC----
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW---DG------YDT-----FYTEK---YMGLPS---- 691 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~---~~------~~~-----~~~~~---~~~~~~---- 691 (776)
-. ..+++.|+||||||.+++.++.++|++++++|+.++.... .. +.. .+... ....+.
T Consensus 75 l~-~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (264)
T 2wfl_A 75 IP-PDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGM 153 (264)
T ss_dssp SC-TTCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEESCTTSCEE
T ss_pred hC-CCCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhccCCCCCcc
Confidence 21 1358999999999999999999999999999988763210 00 000 00000 000000
Q ss_pred ---CCccc-----hh--------------cC-----------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 692 ---EDPVG-----YE--------------YS-----------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 692 ---~~~~~-----~~--------------~~-----------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
..... +. .. .........++|+|+++|++|..+++...+.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~-- 231 (264)
T 2wfl_A 154 SMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESV-- 231 (264)
T ss_dssp EEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHH--
T ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCCHHHHHHHHHhC--
Confidence 00000 00 00 000000012579999999999999999888887776
Q ss_pred CCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 739 ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 739 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.+.++++++++||.. ..+.++++.+.+.+|++
T Consensus 232 --p~~~~~~i~~~gH~~-~~e~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 232 --GADKVKEIKEADHMG-MLSQPREVCKCLLDISD 263 (264)
T ss_dssp --CCSEEEEETTCCSCH-HHHSHHHHHHHHHHHHC
T ss_pred --CCceEEEeCCCCCch-hhcCHHHHHHHHHHHhh
Confidence 456999999999987 66788899999999975
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-17 Score=166.49 Aligned_cols=213 Identities=16% Similarity=0.137 Sum_probs=138.4
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhh-HHHHhCCcEEEEECCCCCCCCchhhhhhhhhc
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTARRGLKFEASIKHN 613 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~ 613 (776)
..+++....+ ..|+||++||.+.+...... |...+ ..|++. |.|+++|+||+|.|.....
T Consensus 25 ~~l~y~~~g~--------g~~~vvllHG~~~~~~~~~~----~~~~~~~~l~~~-~~vi~~D~~G~G~S~~~~~------ 85 (289)
T 1u2e_A 25 LRIHFNDCGQ--------GDETVVLLHGSGPGATGWAN----FSRNIDPLVEAG-YRVILLDCPGWGKSDSVVN------ 85 (289)
T ss_dssp EEEEEEEECC--------CSSEEEEECCCSTTCCHHHH----TTTTHHHHHHTT-CEEEEECCTTSTTSCCCCC------
T ss_pred EEEEEeccCC--------CCceEEEECCCCcccchhHH----HHHhhhHHHhcC-CeEEEEcCCCCCCCCCCCc------
Confidence 6777766532 11389999996411111112 33345 666655 9999999999998864321
Q ss_pred cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc-c---c--------cc
Q 004067 614 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y---D--------TF 681 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-~---~--------~~ 681 (776)
.....+++.+.+..+++.. +.+++.|+||||||.+++.+|.++|++++++|+.++...... + . ..
T Consensus 86 -~~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (289)
T 1u2e_A 86 -SGSRSDLNARILKSVVDQL--DIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQL 162 (289)
T ss_dssp -SSCHHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHH
T ss_pred -cccCHHHHHHHHHHHHHHh--CCCceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHH
Confidence 0233556666665555543 346899999999999999999999999999998877542100 0 0 00
Q ss_pred c-----------cccccCCCCCC-cc----ch----------------------hcCChhhhhccCCCcEEEEecCCCCc
Q 004067 682 Y-----------TEKYMGLPSED-PV----GY----------------------EYSSVMHHVHKMKGKLLLVHGMIDEN 723 (776)
Q Consensus 682 ~-----------~~~~~~~~~~~-~~----~~----------------------~~~~~~~~~~~i~~P~lii~G~~D~~ 723 (776)
+ .......+... .. .+ ...+....+.++++|+|+++|++|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~ 242 (289)
T 1u2e_A 163 YRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRF 242 (289)
T ss_dssp HHSCCHHHHHHHHHTTSSCTTSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCSS
T ss_pred HhcchHHHHHHHHHHhhcCcccCCHHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCCc
Confidence 0 00000001000 00 00 00112245678889999999999999
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 724 VHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 724 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+|+..+..+.+.+ .+.++++++++||.. ..+.++++.+.+.+||.+
T Consensus 243 ~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 288 (289)
T 1u2e_A 243 VPMDAGLRLLSGI----AGSELHIFRDCGHWA-QWEHADAFNQLVLNFLAR 288 (289)
T ss_dssp SCTHHHHHHHHHS----TTCEEEEESSCCSCH-HHHTHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHhhC----CCcEEEEeCCCCCch-hhcCHHHHHHHHHHHhcC
Confidence 9999888887765 457899999999986 455688899999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-15 Score=159.13 Aligned_cols=300 Identities=13% Similarity=0.065 Sum_probs=182.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++||.... ..+.+|++.+++.......... ....+ ..+...........+....|+|
T Consensus 67 V~~v~fspdg~~la~g~~------~~v~i~~~~~g~~~~~l~~~~~----~~~~~-~~~~~~~~~~~~~~v~~v~~s~-- 133 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCN------KTTQVYRVSDGSLVARLSDDSA----ANKDP-ENLNTSSSPSSDLYIRSVCFSP-- 133 (393)
T ss_dssp CCEEEECTTSSEEEEECB------SCEEEEETTTCCEEEEECC----------------------CCCCBEEEEEECT--
T ss_pred EEEEEECCCCCEEEEEcC------CcEEEEEecCCCEEEEecCccc----ccccc-ccccccccCCCceeEEEEEECC--
Confidence 578999999999997432 3588999988876443321110 00000 0000000000112377899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||++|+.. .++.|.+||+.+++....+..+.. .+..+.|+|||+.|+..+. +.|.+||+.+++..........
T Consensus 134 -dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--- 208 (393)
T 1erj_A 134 -DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--- 208 (393)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---
T ss_pred -CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCC---
Confidence 99999976 688999999999887634544433 4888999999999988775 5799999999876543332211
Q ss_pred ecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
+..++|+| ||+.|+..+.+ ..|.+||+.
T Consensus 209 ---------------v~~~~~~~~~~~~l~~~s~d------------------------------------~~v~iwd~~ 237 (393)
T 1erj_A 209 ---------------VTTVAVSPGDGKYIAAGSLD------------------------------------RAVRVWDSE 237 (393)
T ss_dssp ---------------EEEEEECSTTCCEEEEEETT------------------------------------SCEEEEETT
T ss_pred ---------------cEEEEEECCCCCEEEEEcCC------------------------------------CcEEEEECC
Confidence 34678999 88888876643 237899998
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-------------EEEEeccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-------------VILVEELD 360 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-------------~l~~~~~~ 360 (776)
+++....... .......+...+..++|+|||+.|+..+ .+..|.+||+.++... .+..+...
T Consensus 238 ~~~~~~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s----~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 312 (393)
T 1erj_A 238 TGFLVERLDS-ENESGTGHKDSVYSVVFTRDGQSVVSGS----LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312 (393)
T ss_dssp TCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEEC---------------CEEEEEECCSSC
T ss_pred CCcEEEeecc-cccCCCCCCCCEEEEEECCCCCEEEEEe----CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc
Confidence 8875432110 0001134567789999999999887665 4556999998764321 11111111
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecC------CCcEEEEEEc
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNE------ASGQVYFTGT 433 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~------dg~~i~~~~~ 433 (776)
... -.|++ ++.++++...+| .|++||+.+++. ..+..+...+..+. |++ +++ +++++.
T Consensus 313 v~~---~~~~~--------~~~~l~sgs~D~--~v~iwd~~~~~~~~~l~~h~~~v~~v~-~~~~~~~~p~~~-~l~sgs 377 (393)
T 1erj_A 313 VLS---VATTQ--------NDEYILSGSKDR--GVLFWDKKSGNPLLMLQGHRNSVISVA-VANGSSLGPEYN-VFATGS 377 (393)
T ss_dssp EEE---EEECG--------GGCEEEEEETTS--EEEEEETTTCCEEEEEECCSSCEEEEE-ECSSCTTCTTCE-EEEEEE
T ss_pred EEE---EEECC--------CCCEEEEEeCCC--eEEEEECCCCeEEEEECCCCCCEEEEE-ecCCcCcCCCCC-EEEEEC
Confidence 110 01112 234556666677 899999876654 44555555565554 554 566 455555
Q ss_pred cCCCceeeEEEEEe
Q 004067 434 LDGPLESHLYCAKL 447 (776)
Q Consensus 434 ~~~~~~~~l~~~~~ 447 (776)
.++. +.||.+.-
T Consensus 378 ~Dg~--i~iW~~~~ 389 (393)
T 1erj_A 378 GDCK--ARIWKYKK 389 (393)
T ss_dssp TTSE--EEEEEEEE
T ss_pred CCCc--EEECcccc
Confidence 5543 88998864
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.3e-18 Score=175.32 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=140.5
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhc
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 613 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~ 613 (776)
+..+.+..+.+. .|+||++||.+++.. .| ...+...||.|+++|+||+|.+.....
T Consensus 69 ~~~~~~~~~g~~--------~~~vv~~hG~~~~~~-------~~---~~~~~~lg~~Vi~~D~~G~G~S~~~~~------ 124 (330)
T 3p2m_A 69 AGAISALRWGGS--------APRVIFLHGGGQNAH-------TW---DTVIVGLGEPALAVDLPGHGHSAWRED------ 124 (330)
T ss_dssp ETTEEEEEESSS--------CCSEEEECCTTCCGG-------GG---HHHHHHSCCCEEEECCTTSTTSCCCSS------
T ss_pred CceEEEEEeCCC--------CCeEEEECCCCCccc-------hH---HHHHHHcCCeEEEEcCCCCCCCCCCCC------
Confidence 444777777542 268999999876543 23 233444599999999999998863211
Q ss_pred cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc----------------
Q 004067 614 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------------- 677 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------------- 677 (776)
.....+++.+.+..+++.. +.+++.|+||||||.+++.+|.++|++++++|+.+|......
T Consensus 125 -~~~~~~~~a~dl~~~l~~l--~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
T 3p2m_A 125 -GNYSPQLNSETLAPVLREL--APGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALM 201 (330)
T ss_dssp -CBCCHHHHHHHHHHHHHHS--STTCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC--------
T ss_pred -CCCCHHHHHHHHHHHHHHh--CCCCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhh
Confidence 2234566666666665543 346899999999999999999999999999999987532100
Q ss_pred --------ccccccccccCCCCCCc-----------------------cchhcC----ChhhhhccCCCcEEEEecCCCC
Q 004067 678 --------YDTFYTEKYMGLPSEDP-----------------------VGYEYS----SVMHHVHKMKGKLLLVHGMIDE 722 (776)
Q Consensus 678 --------~~~~~~~~~~~~~~~~~-----------------------~~~~~~----~~~~~~~~i~~P~lii~G~~D~ 722 (776)
+...+.......+.... ..+... .....+.++++|+|+++|++|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ 281 (330)
T 3p2m_A 202 HGEREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSG 281 (330)
T ss_dssp ---CCBSCHHHHHHHHHHHCTTSCHHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCEEEEEETTCC
T ss_pred cCCccccCHHHHHHHHHhcCCCCCHHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCEEEEEeCCCC
Confidence 00000000000000000 000000 1123567889999999999999
Q ss_pred ccChHHHHHHHHHHHHCCCCeE-EEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 723 NVHFRHTARLINALVAARKPYE-ILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 723 ~v~~~~~~~~~~~l~~~~~~~~-~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.+++..+..+.+.+ .+.+ +++++++||.+ ..+..+++.+.+.+||++
T Consensus 282 ~v~~~~~~~l~~~~----~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 282 FVTDQDTAELHRRA----THFRGVHIVEKSGHSV-QSDQPRALIEIVRGVLDT 329 (330)
T ss_dssp SSCHHHHHHHHHHC----SSEEEEEEETTCCSCH-HHHCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhC----CCCeeEEEeCCCCCCc-chhCHHHHHHHHHHHHhc
Confidence 99998888877765 5567 99999999987 556788899999999875
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-17 Score=162.64 Aligned_cols=202 Identities=17% Similarity=0.096 Sum_probs=134.1
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|.||++||.+++.. .|...+..|++.||.|+++|+||+|.|..... ..+.++++.+.+..+++.-
T Consensus 4 ~~~vvllHG~~~~~~-------~w~~~~~~L~~~g~rVia~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~l 69 (273)
T 1xkl_A 4 GKHFVLVHGACHGGW-------SWYKLKPLLEAAGHKVTALDLAASGTDLRKIE-------ELRTLYDYTLPLMELMESL 69 (273)
T ss_dssp CCEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEECCCTTSTTCCCCGG-------GCCSHHHHHHHHHHHHHTS
T ss_pred CCeEEEECCCCCCcc-------hHHHHHHHHHhCCCEEEEecCCCCCCCccCcc-------cccCHHHHHHHHHHHHHHh
Confidence 368999999875543 34556788988999999999999998864211 1123566666666565543
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---------cccc-----cccc---ccCCCCC----
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------YDTF-----YTEK---YMGLPSE---- 692 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------~~~~-----~~~~---~~~~~~~---- 692 (776)
. ..+++.|+||||||++++.++.++|++++++|+.++...... +... +... ....+..
T Consensus 70 ~-~~~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (273)
T 1xkl_A 70 S-ADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTS 148 (273)
T ss_dssp C-SSSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEE
T ss_pred c-cCCCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccc
Confidence 2 136899999999999999999999999999998876421100 0000 0000 0000000
Q ss_pred ---Cccc-----h--------------hcCC-----------hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHC
Q 004067 693 ---DPVG-----Y--------------EYSS-----------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 739 (776)
Q Consensus 693 ---~~~~-----~--------------~~~~-----------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 739 (776)
.... + .... .+......++|+|+++|++|..+|+..++.+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~--- 225 (273)
T 1xkl_A 149 MFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNI--- 225 (273)
T ss_dssp EECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHH---
T ss_pred cccCHHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCCHHHHHHHHHhC---
Confidence 0000 0 0000 00000013579999999999999999888887776
Q ss_pred CCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 740 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 740 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.+.+++++|++||.. ..+.++++.+.+.+|+++.
T Consensus 226 -p~~~~~~i~~aGH~~-~~e~P~~~~~~i~~fl~~~ 259 (273)
T 1xkl_A 226 -GVTEAIEIKGADHMA-MLCEPQKLCASLLEIAHKY 259 (273)
T ss_dssp -CCSEEEEETTCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred -CCCeEEEeCCCCCCc-hhcCHHHHHHHHHHHHHHh
Confidence 456899999999987 6677899999999999764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=176.43 Aligned_cols=297 Identities=10% Similarity=0.066 Sum_probs=179.9
Q ss_pred CCceeEcCCCCEEEEEeCCCC------cCcceEEEEecCCCceE-EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 004067 57 PTSIGFSPDDNLITYLLSPDH------SLSRKVFSFDPKTCKQE-LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR 129 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~------~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (776)
+..++|||||+.+.+.....+ .....|++|++.+++.. .+... .+...+..
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~----------------------~~~~~v~~ 72 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL----------------------QVDSKFND 72 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC----------------------CCSSCEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE----------------------ecCCceEE
Confidence 378899999995555542222 23457999999987632 11110 01246889
Q ss_pred EEEeecCCCceEEEEe-CCCcEEEEeCCC----CccceecCCCCCCCccCceeCCC-CCEEEEEE-CCcEEEEecCCCc-
Q 004067 130 YEWVKTSSKKKIIMVP-LPDGIYFQDLSC----SKPELKLSSSSCSPVIDPHLSSD-GTMIAFVR-DCELHVLNLLINE- 201 (776)
Q Consensus 130 ~~~sp~~~dg~~l~~~-~~~~l~~~d~~~----~~~~~~l~~~~~~~~~~~~~SpD-g~~la~~~-~~~l~~~~l~~g~- 201 (776)
+.|+| ||+.|+.. .++.|.+||+.+ .+....+..... .+..+.|+|| ++.|+... ++.|++|++.+++
T Consensus 73 ~~~s~---~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 73 LDWSH---NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp EEECS---SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred EEECC---CCCeEEEEccCCeEEEeecccccccccchhhccCCcc-ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 99999 99999986 678999999987 223324444433 4888999999 66666655 3579999999876
Q ss_pred -----eeEEeeCCCCCceecCCcccceecccCCcceEEECCCC-CeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 202 -----QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDS-KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 202 -----~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
........ ......+..+.|+||+ +.|+....+
T Consensus 149 ~~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~~l~~~~~d--------------------------- 187 (416)
T 2pm9_A 149 SPSNYTPLTPGQS--------------MSSVDEVISLAWNQSLAHVFASAGSS--------------------------- 187 (416)
T ss_dssp CTTTCCCBCCCCS--------------CCSSCCCCEEEECSSCTTEEEEESSS---------------------------
T ss_pred ccccccccccccc--------------cCCCCCeeEEEeCCCCCcEEEEEcCC---------------------------
Confidence 21111000 0011125688999995 555443322
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCc-eE-
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQ-RK- 352 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~-~~- 352 (776)
..|.+||+.+++......... ....+...+..++|+|||. .++.... +.....|.+||+.++. ..
T Consensus 188 ---------g~v~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 188 ---------NFASIWDLKAKKEVIHLSYTS--PNSGIKQQLSVVEWHPKNSTRVATATG-SDNDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp ---------SCEEEEETTTTEEEEEECCCC--CSSCCCCCEEEEEECSSCTTEEEEEEC-CSSSCCCCEEETTSTTSCSB
T ss_pred ---------CCEEEEECCCCCcceEEeccc--cccccCCceEEEEECCCCCCEEEEEEC-CCCCceEEEEeCCCCCCCcE
Confidence 347999999887544322100 0011256789999999985 5555542 2222369999998863 22
Q ss_pred EEE-EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEE
Q 004067 353 VIL-VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 353 ~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~ 430 (776)
.+. .+...... -.|+| .++.++++...+| .|++|++..++ ...+..+...+..+. |+|++..+++
T Consensus 256 ~~~~~~~~~v~~---~~~s~-------~~~~~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~l~ 322 (416)
T 2pm9_A 256 TLNQGHQKGILS---LDWCH-------QDEHLLLSSGRDN--TVLLWNPESAEQLSQFPARGNWCFKTK-FAPEAPDLFA 322 (416)
T ss_dssp CCCSCCSSCEEE---EEECS-------SCSSCEEEEESSS--EEEEECSSSCCEEEEEECSSSCCCCEE-ECTTCTTEEE
T ss_pred EeecCccCceeE---EEeCC-------CCCCeEEEEeCCC--CEEEeeCCCCccceeecCCCCceEEEE-ECCCCCCEEE
Confidence 222 22222111 11222 1344666666677 89999987665 445555555555554 9999944566
Q ss_pred EEccCCCceeeEEEEEe
Q 004067 431 TGTLDGPLESHLYCAKL 447 (776)
Q Consensus 431 ~~~~~~~~~~~l~~~~~ 447 (776)
++..++ .+.+|.+.-
T Consensus 323 s~~~d~--~i~iw~~~~ 337 (416)
T 2pm9_A 323 CASFDN--KIEVQTLQN 337 (416)
T ss_dssp ECCSSS--EEEEEESCC
T ss_pred EEecCC--cEEEEEccC
Confidence 665554 377887763
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-17 Score=167.99 Aligned_cols=225 Identities=12% Similarity=0.050 Sum_probs=141.4
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+...+.. +|.++++.... +.|+||++||.+++.. .|..++..|.+ ||.|+++|+||+|.+
T Consensus 12 ~~~~~~~~~-~g~~l~~~~~g---------~~~~vv~lHG~~~~~~-------~~~~~~~~l~~-~~~v~~~D~~G~G~S 73 (306)
T 3r40_A 12 GFGSEWINT-SSGRIFARVGG---------DGPPLLLLHGFPQTHV-------MWHRVAPKLAE-RFKVIVADLPGYGWS 73 (306)
T ss_dssp TCEEEEECC-TTCCEEEEEEE---------CSSEEEEECCTTCCGG-------GGGGTHHHHHT-TSEEEEECCTTSTTS
T ss_pred CCceEEEEe-CCEEEEEEEcC---------CCCeEEEECCCCCCHH-------HHHHHHHHhcc-CCeEEEeCCCCCCCC
Confidence 344444444 78888888764 2268999999877654 24455777877 999999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc--
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-- 680 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~-- 680 (776)
........ ......+++.+.+..+++.. +.+++.++||||||.+++.+|.++|++++++|+.++.........
T Consensus 74 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 148 (306)
T 3r40_A 74 DMPESDEQ---HTPYTKRAMAKQLIEAMEQL--GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEYWQRMN 148 (306)
T ss_dssp CCCCCCTT---CGGGSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHHHHHCS
T ss_pred CCCCCCcc---cCCCCHHHHHHHHHHHHHHh--CCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccchhhhh
Confidence 64322100 00223566666666665543 446899999999999999999999999999999987543110000
Q ss_pred -----------------------------cccc----cccCC--CC-CCccc---hhc--CC------------------
Q 004067 681 -----------------------------FYTE----KYMGL--PS-EDPVG---YEY--SS------------------ 701 (776)
Q Consensus 681 -----------------------------~~~~----~~~~~--~~-~~~~~---~~~--~~------------------ 701 (776)
.+.. .+... .. ..... +.. ..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (306)
T 3r40_A 149 RAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRAGAYAD 228 (306)
T ss_dssp HHHHHHSTHHHHHTSCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHHHHTHH
T ss_pred hhhhhhhHHHHHhhcccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHhccccc
Confidence 0000 00000 00 00000 000 00
Q ss_pred ------hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 702 ------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 702 ------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
....+.++++|+|+++|++|.++++....+..+.+ ..+.+++++ ++||.+ ..+.++++.+.+.+||++.
T Consensus 229 ~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~-~~gH~~-~~e~p~~~~~~i~~fl~~~ 303 (306)
T 3r40_A 229 FEHDKIDVEAGNKIPVPMLALWGASGIAQSAATPLDVWRKW---ASDVQGAPI-ESGHFL-PEEAPDQTAEALVRFFSAA 303 (306)
T ss_dssp HHHHHHHHHHTCCBCSCEEEEEETTCC------CHHHHHHH---BSSEEEEEE-SSCSCH-HHHSHHHHHHHHHHHHHC-
T ss_pred chhhhhhhhhccCCCcceEEEEecCCcccCchhHHHHHHhh---cCCCeEEEe-cCCcCc-hhhChHHHHHHHHHHHHhc
Confidence 00024788899999999999999855444444444 356788888 679976 5677889999999999864
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-15 Score=158.43 Aligned_cols=280 Identities=6% Similarity=-0.009 Sum_probs=176.3
Q ss_pred CeeeEEEeecCCCceEEEEeC--------CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEE
Q 004067 126 GVTRYEWVKTSSKKKIIMVPL--------PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVL 195 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~--------~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~ 195 (776)
+...+.|+| ||++|++.. ++.|++||+.+++....+.... ....+.|+|||+.+++... +.|+++
T Consensus 42 ~~~~~~~s~---dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 42 GAYEMAYSQ---QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SEEEEEEET---TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred CccceEECC---CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEECCCCCEEEEEecCCCEEEEE
Confidence 567789999 999998875 4579999999988763443322 3677899999998877765 579999
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
|+++++.......+.......+.+ .-...+.|+|||+.|++......
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~dg~~l~~~~~~~~------------------------- 163 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRP--------LQPRELVADDATNTVYISGIGKE------------------------- 163 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCC--------CEEEEEEEETTTTEEEEEEESSS-------------------------
T ss_pred eCCCCeeEEEEecCCCccccccCC--------CCCceEEECCCCCEEEEEecCCC-------------------------
Confidence 999998755443322100000000 00236789999998876652111
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
..|++||+++++...... ........+.|+|||+.+++.. ....|++||+++++.....
T Consensus 164 ---------~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~----~~~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 164 ---------SVIWVVDGGNIKLKTAIQ--------NTGKMSTGLALDSEGKRLYTTN----ADGELITIDTADNKILSRK 222 (353)
T ss_dssp ---------CEEEEEETTTTEEEEEEC--------CCCTTCCCCEEETTTTEEEEEC----TTSEEEEEETTTTEEEEEE
T ss_pred ---------ceEEEEcCCCCceEEEec--------CCCCccceEEECCCCCEEEEEc----CCCeEEEEECCCCeEEEEE
Confidence 458999999887655421 1222345689999999777664 2346899999998875544
Q ss_pred EeccC--ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 356 VEELD--SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 356 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
..... ......-.|+| +++.+++....++ .|++||+.+++. ..+..+.. .. ..|++||+++|+..
T Consensus 223 ~~~~~~~~~~~~~~~~s~-------dg~~l~~~~~~~~--~v~~~d~~~~~~~~~~~~~~~--~~-~~~s~dg~~l~v~~ 290 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDT-------ARQRAFITDSKAA--EVLVVDTRNGNILAKVAAPES--LA-VLFNPARNEAYVTH 290 (353)
T ss_dssp ECCCSSSCCCEEEEEEET-------TTTEEEEEESSSS--EEEEEETTTCCEEEEEECSSC--CC-EEEETTTTEEEEEE
T ss_pred EcCCCCCCcccceEEECC-------CCCEEEEEeCCCC--EEEEEECCCCcEEEEEEcCCC--ce-EEECCCCCEEEEEE
Confidence 32111 00000011222 2333444443334 899999877654 33333321 22 35899999988877
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
..++ .|+.+++. .+. ....+........+.|+|||++|++....
T Consensus 291 ~~~~----~v~~~d~~-~~~----~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 291 RQAG----KVSVIDAK-SYK----VVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTT----EEEEEETT-TTE----EEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCCC----eEEEEECC-CCe----EEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 5543 46666663 232 34455555556788999999988887665
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=165.24 Aligned_cols=213 Identities=11% Similarity=0.012 Sum_probs=137.1
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|..+++.... + .|.||++||.+++.. .|...+..|++. |.|+++|+||+|.|... ..
T Consensus 16 ~~g~~l~y~~~G--~-------g~~lvllHG~~~~~~-------~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-~~--- 74 (294)
T 1ehy_A 16 LPDVKIHYVREG--A-------GPTLLLLHGWPGFWW-------EWSKVIGPLAEH-YDVIVPDLRGFGDSEKP-DL--- 74 (294)
T ss_dssp CSSCEEEEEEEE--C-------SSEEEEECCSSCCGG-------GGHHHHHHHHTT-SEEEEECCTTSTTSCCC-CT---
T ss_pred ECCEEEEEEEcC--C-------CCEEEEECCCCcchh-------hHHHHHHHHhhc-CEEEecCCCCCCCCCCC-cc---
Confidence 478888887654 1 267999999876643 345567778776 99999999999998753 10
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC-Ccc--c---------c-
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT-SWD--G---------Y- 678 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~-~~~--~---------~- 678 (776)
.....+.++++.+.+..++++- ..+++.|+||||||.+++.+|.++|++++++|+.++.. ... . +
T Consensus 75 ~~~~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 152 (294)
T 1ehy_A 75 NDLSKYSLDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWY 152 (294)
T ss_dssp TCGGGGCHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHH
T ss_pred ccccCcCHHHHHHHHHHHHHHc--CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchhhccchhccCceE
Confidence 0000123556666666555543 34589999999999999999999999999999988532 110 0 0
Q ss_pred ---c----------------ccccccc----cCCCCC-Cc---cchhc----C---------------Chh-----hhhc
Q 004067 679 ---D----------------TFYTEKY----MGLPSE-DP---VGYEY----S---------------SVM-----HHVH 707 (776)
Q Consensus 679 ---~----------------~~~~~~~----~~~~~~-~~---~~~~~----~---------------~~~-----~~~~ 707 (776)
. ..+...+ ...+.. .. ..+.. . ... ..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (294)
T 1ehy_A 153 SQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHT 232 (294)
T ss_dssp HHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGS
T ss_pred EEecCcchhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHhhhhhhcCCcccC
Confidence 0 0000000 000000 00 00100 0 000 0123
Q ss_pred cCCCcEEEEecCCCCccCh-HHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 708 KMKGKLLLVHGMIDENVHF-RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 708 ~i~~P~lii~G~~D~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
++++|+|+++|++|..+++ .....+.+. -.+.++++++++||.. ..+.++++.+.+.+||
T Consensus 233 ~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~----~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl 293 (294)
T 1ehy_A 233 MSDLPVTMIWGLGDTCVPYAPLIEFVPKY----YSNYTMETIEDCGHFL-MVEKPEIAIDRIKTAF 293 (294)
T ss_dssp CBCSCEEEEEECCSSCCTTHHHHHHHHHH----BSSEEEEEETTCCSCH-HHHCHHHHHHHHHHHC
T ss_pred cCCCCEEEEEeCCCCCcchHHHHHHHHHH----cCCCceEEeCCCCCCh-hhhCHHHHHHHHHHHh
Confidence 7889999999999998884 444444443 3578999999999976 5667888899998886
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=169.61 Aligned_cols=213 Identities=13% Similarity=0.065 Sum_probs=143.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|..+++....+ ++.|.||++||.+++.. .|...+..|++. |.|+++|+||+|.|....
T Consensus 15 ~g~~l~y~~~G~-------g~~~pvvllHG~~~~~~-------~w~~~~~~L~~~-~~via~Dl~G~G~S~~~~------ 73 (316)
T 3afi_E 15 LGSSMAYRETGA-------QDAPVVLFLHGNPTSSH-------IWRNILPLVSPV-AHCIAPDLIGFGQSGKPD------ 73 (316)
T ss_dssp TTEEEEEEEESC-------TTSCEEEEECCTTCCGG-------GGTTTHHHHTTT-SEEEEECCTTSTTSCCCS------
T ss_pred CCEEEEEEEeCC-------CCCCeEEEECCCCCchH-------HHHHHHHHHhhC-CEEEEECCCCCCCCCCCC------
Confidence 677888887653 12258999999877644 334456777654 999999999999986421
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC---ccccc----------
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYD---------- 679 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~---~~~~~---------- 679 (776)
..+.++++.+.+..+++.- ..+++.|+||||||.+++.+|.++|++++++|+.++... +....
T Consensus 74 --~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (316)
T 3afi_E 74 --IAYRFFDHVRYLDAFIEQR--GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDH 149 (316)
T ss_dssp --SCCCHHHHHHHHHHHHHHT--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCCCCGGGHHH
T ss_pred --CCCCHHHHHHHHHHHHHHc--CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccchhhcccccc
Confidence 1234666666666666553 346899999999999999999999999999998865321 11000
Q ss_pred -----c--------c-----------ccccccC---CCCCCc---cch-----------------hcCC-----------
Q 004067 680 -----T--------F-----------YTEKYMG---LPSEDP---VGY-----------------EYSS----------- 701 (776)
Q Consensus 680 -----~--------~-----------~~~~~~~---~~~~~~---~~~-----------------~~~~----------- 701 (776)
. . +...+.. ...... ..+ ....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (316)
T 3afi_E 150 AEAARAVFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAGEPADVYEA 229 (316)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTTBSHHHHHH
T ss_pred chhHHHHHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccccchhhhhH
Confidence 0 0 0000000 000000 000 0000
Q ss_pred ---hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 702 ---VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 702 ---~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
....+.++++|+|+++|++|..+++..+..+.+.+ .+.++++++++||.+ ..+.++++.+.+.+||.+.
T Consensus 230 ~~~~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~GH~~-~~e~p~~~~~~i~~fl~~~ 301 (316)
T 3afi_E 230 LQSAHAALAASSYPKLLFTGEPGALVSPEFAERFAASL----TRCALIRLGAGLHYL-QEDHADAIGRSVAGWIAGI 301 (316)
T ss_dssp HHHHHHHHHHCCSCEEEEEEEECSSSCHHHHHHHHHHS----SSEEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCeEEEecCCCCccCHHHHHHHHHhC----CCCeEEEcCCCCCCc-hhhCHHHHHHHHHHHHhhc
Confidence 01123468899999999999999988777776654 568999999999986 5667889999999999763
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=168.10 Aligned_cols=216 Identities=13% Similarity=-0.003 Sum_probs=141.9
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+...+. .+|..+++..+. ..|+||++||.+++.. .|..++..|++. |.|+++|+||+|.+.
T Consensus 10 ~~~~~~~-~~g~~l~~~~~g---------~~~~vv~lHG~~~~~~-------~~~~~~~~L~~~-~~vi~~D~~G~G~S~ 71 (301)
T 3kda_A 10 FESAYRE-VDGVKLHYVKGG---------QGPLVMLVHGFGQTWY-------EWHQLMPELAKR-FTVIAPDLPGLGQSE 71 (301)
T ss_dssp CEEEEEE-ETTEEEEEEEEE---------SSSEEEEECCTTCCGG-------GGTTTHHHHTTT-SEEEEECCTTSTTCC
T ss_pred cceEEEe-eCCeEEEEEEcC---------CCCEEEEECCCCcchh-------HHHHHHHHHHhc-CeEEEEcCCCCCCCC
Confidence 3444444 488889888775 1268999999877654 244457788887 999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCc-EEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc-cc--
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-YD-- 679 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-~~-- 679 (776)
... ....++++.+.+..+++.. +.++ +.++||||||.+++.++.++|++++++|+.+|...... ..
T Consensus 72 ~~~--------~~~~~~~~~~~l~~~l~~l--~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 141 (301)
T 3kda_A 72 PPK--------TGYSGEQVAVYLHKLARQF--SPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFP 141 (301)
T ss_dssp CCS--------SCSSHHHHHHHHHHHHHHH--CSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGSB
T ss_pred CCC--------CCccHHHHHHHHHHHHHHc--CCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccchh
Confidence 531 1234555655555555442 3346 99999999999999999999999999999887532100 00
Q ss_pred -------------------cccc------------ccc----cCCCC-CCcc---chh--cCC-----------------
Q 004067 680 -------------------TFYT------------EKY----MGLPS-EDPV---GYE--YSS----------------- 701 (776)
Q Consensus 680 -------------------~~~~------------~~~----~~~~~-~~~~---~~~--~~~----------------- 701 (776)
.... ..+ ...+. .... .+. ...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (301)
T 3kda_A 142 AFTAQGESLVWHFSFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNES 221 (301)
T ss_dssp SEETTEECSSTHHHHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHHH
T ss_pred hhcchhhhhhhhHHHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhccc
Confidence 0000 000 00000 0000 000 000
Q ss_pred ------hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 702 ------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 702 ------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
....+.++++|+|+++|++| +++.....+.+ ...++++++++++||.+ ..+.++++.+.+.+|+++
T Consensus 222 ~~~~~~~~~~l~~i~~P~l~i~G~~D--~~~~~~~~~~~----~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~~l~~ 293 (301)
T 3kda_A 222 VRQNAELAKTRLQMPTMTLAGGGAGG--MGTFQLEQMKA----YAEDVEGHVLPGCGHWL-PEECAAPMNRLVIDFLSR 293 (301)
T ss_dssp HHHHHHHTTSCBCSCEEEEEECSTTS--CTTHHHHHHHT----TBSSEEEEEETTCCSCH-HHHTHHHHHHHHHHHHTT
T ss_pred hhhcccchhhccccCcceEEEecCCC--CChhHHHHHHh----hcccCeEEEcCCCCcCc-hhhCHHHHHHHHHHHHhh
Confidence 00012278899999999999 55555555433 34678999999999987 667889999999999875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-15 Score=156.32 Aligned_cols=276 Identities=12% Similarity=0.081 Sum_probs=184.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|||||++|+-.+.+ ..|.+||+.+++........ ...+....|+|
T Consensus 58 v~~~~~s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~-----------------------~~~v~~~~~s~-- 107 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQD-----GKLIIWDSYTTNKVHAIPLR-----------------------SSWVMTCAYAP-- 107 (340)
T ss_dssp EEEEEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECS-----------------------SSCEEEEEECT--
T ss_pred eEEEEECCCCCEEEEEeCC-----CcEEEEECCCCCcceEeecC-----------------------CccEEEEEECC--
Confidence 5789999999999865542 46999999887754333211 23578899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccc----eecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPE----LKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~----~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
||+.|+.. .++.+.+||+.+++.. ..+.... ..+....|+|+++.+.-..++.|.+||+.+++..........
T Consensus 108 -~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 108 -SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp -TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS-SCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred -CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC-ccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence 99999876 7788999999876421 1233333 246778999998744333456899999998876543322111
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
.+..+.|+|||+.|+..+.+ ..|.+||
T Consensus 186 -----------------~v~~~~~~~~~~~l~sg~~d------------------------------------~~v~~wd 212 (340)
T 1got_B 186 -----------------DVMSLSLAPDTRLFVSGACD------------------------------------ASAKLWD 212 (340)
T ss_dssp -----------------CEEEEEECTTSSEEEEEETT------------------------------------SCEEEEE
T ss_pred -----------------ceEEEEECCCCCEEEEEeCC------------------------------------CcEEEEE
Confidence 14578899999988766543 2479999
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccccccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTP 371 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 371 (776)
+.+++....- ..+...+..++|+|||+.++..+ .+..|.+||+.++.......+.........-.|+|
T Consensus 213 ~~~~~~~~~~--------~~h~~~v~~v~~~p~~~~l~s~s----~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 213 VREGMCRQTF--------TGHESDINAICFFPNGNAFATGS----DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp TTTCSEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred CCCCeeEEEE--------cCCcCCEEEEEEcCCCCEEEEEc----CCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 9888754431 45667799999999999887665 44569999998876544333221100000112333
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
++.++++...+| .|.+||...++ ...+..+...+..+. |++||+.|+. ++.++. +.||
T Consensus 281 --------~g~~l~~g~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~-~s~dg~~l~s-~s~D~~--i~iW 339 (340)
T 1got_B 281 --------SGRLLLAGYDDF--NCNVWDALKADRAGVLAGHDNRVSCLG-VTDDGMAVAT-GSWDSF--LKIW 339 (340)
T ss_dssp --------TSSEEEEEETTS--EEEEEETTTCCEEEEEECCSSCEEEEE-ECTTSSCEEE-EETTSC--EEEE
T ss_pred --------CCCEEEEECCCC--eEEEEEcccCcEeeEeecCCCcEEEEE-EcCCCCEEEE-EcCCcc--EEec
Confidence 334666666677 89999976554 455666666666654 9999996554 444443 6777
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-15 Score=165.92 Aligned_cols=346 Identities=11% Similarity=0.033 Sum_probs=208.0
Q ss_pred eEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
.+||||+.++ +... ...|.+||.++++....... +..+....||| ||+
T Consensus 144 ~~~p~~~~~v--s~~~---d~~V~v~D~~t~~~~~~i~~------------------------g~~~~~v~~sp---dg~ 191 (543)
T 1nir_A 144 DLDLPNLFSV--TLRD---AGQIALVDGDSKKIVKVIDT------------------------GYAVHISRMSA---SGR 191 (543)
T ss_dssp CCCGGGEEEE--EEGG---GTEEEEEETTTCCEEEEEEC------------------------STTEEEEEECT---TSC
T ss_pred ccCCCCEEEE--EEcC---CCeEEEEECCCceEEEEEec------------------------CcccceEEECC---CCC
Confidence 5899986443 3222 35799999999987544421 12366788999 999
Q ss_pred EEEEe-CCCcEEEEeC--CCCccceecCCCCCCCccCceeCC----CCCEEEEEE--CCcEEEEecCCCceeEEeeCCCC
Q 004067 141 IIMVP-LPDGIYFQDL--SCSKPELKLSSSSCSPVIDPHLSS----DGTMIAFVR--DCELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 141 ~l~~~-~~~~l~~~d~--~~~~~~~~l~~~~~~~~~~~~~Sp----Dg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
+|+.. .++.|.+||+ .+++....+..+. ....++||| ||++|+... ++.|.++|..+++..+.......
T Consensus 192 ~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~ 269 (543)
T 1nir_A 192 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGI--EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 269 (543)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred EEEEECCCCeEEEEECcCCCCcEEEEEecCC--CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCc
Confidence 99876 6688999999 6766553444322 367889999 999987765 46799999999887655432110
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
. ..+ ..+. .-.++.++.+|||++.+++..... ..|.+||
T Consensus 270 ~--~~~-~~~~---~~~~v~~i~~s~~~~~~~vs~~~~-----------------------------------g~i~vvd 308 (543)
T 1nir_A 270 T--VDT-QTYH---PEPRVAAIIASHEHPEFIVNVKET-----------------------------------GKVLLVN 308 (543)
T ss_dssp C--SSS-CCEE---SCCCEEEEEECSSSSEEEEEETTT-----------------------------------TEEEEEE
T ss_pred c--cCc-cccc---cCCceEEEEECCCCCEEEEEECCC-----------------------------------CeEEEEE
Confidence 0 000 0000 001245788999999876544211 3578899
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-cCceeecccccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFT 370 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~ 370 (776)
..+++...+.. ........++.|+|||++++...+. ...|.+||+++++........ .+.
T Consensus 309 ~~~~~~l~~~~-------i~~~~~~~~~~~spdg~~l~va~~~---~~~v~v~D~~tg~l~~~i~~g~~ph--------- 369 (543)
T 1nir_A 309 YKDIDNLTVTS-------IGAAPFLHDGGWDSSHRYFMTAANN---SNKVAVIDSKDRRLSALVDVGKTPH--------- 369 (543)
T ss_dssp CTTSSSCEEEE-------EECCSSCCCEEECTTSCEEEEEEGG---GTEEEEEETTTTEEEEEEECSSSBC---------
T ss_pred ecCCCcceeEE-------eccCcCccCceECCCCCEEEEEecC---CCeEEEEECCCCeEEEeeccCCCCC---------
Confidence 88765322211 1122345568999999977655432 335888999999865544311 000
Q ss_pred cCCCCccc-c-CCeEEEEeccCCceEEEEEeCCC-------ce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCc--
Q 004067 371 PLDKGVTK-Y-SGGFIWASEKTGFRHLYLHDING-------TC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL-- 438 (776)
Q Consensus 371 ~~~~~~~~-~-~~~~~~~s~~~g~~~l~~~~~~g-------~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~-- 438 (776)
+ +.+..+ + +++.+|.+...+...|.+|+.++ .+ .+.|..+...+. ++.++|||++||....-. +.
T Consensus 370 ~-g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~-~v~~~pdg~~l~v~~~~~-~~~~ 446 (543)
T 1nir_A 370 P-GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL-FIKTHPKSSHLYVDTTFN-PDAR 446 (543)
T ss_dssp C-TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-CEECCTTCCEEEECCTTC-SSHH
T ss_pred C-CCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce-EEEcCCCCCcEEEecCCC-CCcc
Confidence 0 001011 1 22444555443444899999875 33 445554332222 244899999988876311 10
Q ss_pred -eeeEEEEEeCCCCCCccccceee--------cC-CCCeEEEEEcCCcCEEEEEeeCC-CCCCEEEEEEcCCCceeEeec
Q 004067 439 -ESHLYCAKLYPDWNHTLEAPVKL--------TN-GKGKHVAVLDHNMRNFVDFHDSL-DSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 439 -~~~l~~~~~~~~g~~~~~~~~~l--------~~-~~~~~~~~~spdg~~l~~~~~~~-~~~~~i~~~~~~~~~~~~~l~ 507 (776)
...|..+++. .++ ...+.| +. ...+..+.|+|||+.+.+...+. .....|.++|..+++..+.+.
T Consensus 447 ~~~~v~v~d~~-~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 447 ISQSVAVFDLK-NLD---AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HHTCEEEEETT-CTT---SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cCceEEEEECC-CCC---CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 1234444542 232 111333 22 22366789999999999886532 334689999999998766654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-15 Score=172.20 Aligned_cols=256 Identities=16% Similarity=0.100 Sum_probs=167.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
..+++|||||++|||.+...|....+||++|+++|+..+++.. ...+..+.|||
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~------------------------~~~~~~~~wsp-- 180 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE------------------------RVKFSCMAWTH-- 180 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE------------------------EECSCCEEECT--
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc------------------------CcccceEEEEe--
Confidence 4689999999999999987665445999999999998765421 11345789999
Q ss_pred CCceEEEEeC-C----------------CcEEEEeCCCCccce-ec-CCCC-CCCccCceeCCCCCEEEEEEC------C
Q 004067 137 SKKKIIMVPL-P----------------DGIYFQDLSCSKPEL-KL-SSSS-CSPVIDPHLSSDGTMIAFVRD------C 190 (776)
Q Consensus 137 ~dg~~l~~~~-~----------------~~l~~~d~~~~~~~~-~l-~~~~-~~~~~~~~~SpDg~~la~~~~------~ 190 (776)
||+.|+|.. + .+||++++.+++... .+ +... ......+.|||||++|++.+. .
T Consensus 181 -Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 181 -DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp -TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred -CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 999999973 2 239999999887431 22 2211 112457899999999999873 4
Q ss_pred cEEEEecCC------C--ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCC
Q 004067 191 ELHVLNLLI------N--EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGK 262 (776)
Q Consensus 191 ~l~~~~l~~------g--~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 262 (776)
+||++++++ + ..++|+..... ....|+|||+.|+|.+....
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~s~dg~~l~~~s~~~~------------ 308 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEG-------------------EYDYVTNEGTVFTFKTNRHS------------ 308 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSS-------------------CEEEEEEETTEEEEEECTTC------------
T ss_pred EEEEEECcccccccCCccceEEeeCCCCc-------------------EEEEEeccCCEEEEEECCCC------------
Confidence 799999987 6 46666643321 12358999999999874321
Q ss_pred CCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc---eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceE
Q 004067 263 SSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP---VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKL 339 (776)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 339 (776)
....|+++|+++++ .+.+... .....+..+.|++++++++.. .++ ...
T Consensus 309 --------------------~~~~l~~~d~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~lv~~~-~~~-g~~ 359 (710)
T 2xdw_A 309 --------------------PNYRLINIDFTDPEESKWKVLVPE-------HEKDVLEWVACVRSNFLVLCY-LHD-VKN 359 (710)
T ss_dssp --------------------TTCEEEEEETTSCCGGGCEEEECC-------CSSCEEEEEEEETTTEEEEEE-EET-TEE
T ss_pred --------------------CCCEEEEEeCCCCCcccceeccCC-------CCCCeEEEEEEEcCCEEEEEE-EEC-CEE
Confidence 12568999998875 2444221 112367789999777644443 333 466
Q ss_pred EEEEEECCCCc-eEEEEEeccCceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCce--eeccc
Q 004067 340 KVLKFDIKTGQ-RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTC--LGPIT 409 (776)
Q Consensus 340 ~l~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~--~~~lt 409 (776)
.|+++|+.+|+ .+.+..+ ...+.. ..+ +.+++.+++.. +......||++|+.+++ .+.+.
T Consensus 360 ~l~~~~~~~g~~~~~l~~~--~~~v~~-~~~-------s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLE--VGSVVG-YSG-------QKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp EEEEEETTTCCEEEEECCC--SSEEEE-EEC-------CTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEE
T ss_pred EEEEEECCCCCEEEecCCC--CceEEE-Eec-------CCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEee
Confidence 79999996665 4555432 111110 011 12344565553 33344599999998876 44443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-16 Score=163.44 Aligned_cols=287 Identities=9% Similarity=-0.024 Sum_probs=177.3
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEe-------CCCCccce----ecCCCCCCCccCceeCCCCCEEEEEECCcEEE
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQD-------LSCSKPEL----KLSSSSCSPVIDPHLSSDGTMIAFVRDCELHV 194 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d-------~~~~~~~~----~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~ 194 (776)
.+....|+| ||+.|+...+..+.+|| ........ .....+. .+..++||||++.++-..++.|.+
T Consensus 32 ~v~~~~fs~---dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~l~~~s~dg~v~l 107 (344)
T 4gqb_B 32 QLEAARYRS---DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEA-GVADLTWVGERGILVASDSGAVEL 107 (344)
T ss_dssp EEEEEEECT---TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESS-CEEEEEEETTTEEEEEETTSEEEE
T ss_pred CEEEEEECC---CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCC-CEEEEEEeCCCeEEEEECCCEEEE
Confidence 467889999 99999877554433333 21111100 0001112 367799999975443333567999
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
||+++++........ ..+.. ..+..++|+|||+.|+..+.+
T Consensus 108 Wd~~~~~~~~~~~~~-----~~~H~--------~~V~~v~~spdg~~l~sgs~d-------------------------- 148 (344)
T 4gqb_B 108 WELDENETLIVSKFC-----KYEHD--------DIVSTVSVLSSGTQAVSGSKD-------------------------- 148 (344)
T ss_dssp EEECTTSSCEEEEEE-----EECCS--------SCEEEEEECTTSSEEEEEETT--------------------------
T ss_pred EeccCCCceeEeecc-----ccCCC--------CCEEEEEECCCCCEEEEEeCC--------------------------
Confidence 999988654322100 00011 125578999999999877644
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
..|.+||+.+++....- ..+...+..+.|+||++ +++..+ .+..|.+||+.+++...
T Consensus 149 ----------~~i~iwd~~~~~~~~~~--------~~h~~~V~~~~~~~~~~~~l~s~s----~D~~v~iwd~~~~~~~~ 206 (344)
T 4gqb_B 149 ----------ICIKVWDLAQQVVLSSY--------RAHAAQVTCVAASPHKDSVFLSCS----EDNRILLWDTRCPKPAS 206 (344)
T ss_dssp ----------SCEEEEETTTTEEEEEE--------CCCSSCEEEEEECSSCTTEEEEEE----TTSCEEEEETTSSSCEE
T ss_pred ----------CeEEEEECCCCcEEEEE--------cCcCCceEEEEecCCCCCceeeec----cccccccccccccceee
Confidence 23799999998765431 45778899999999997 455444 34569999999887644
Q ss_pred EEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 354 ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.............-.|.| +++.++.+...+| .|.+||+.+++ ...+..+...+..+. |+|+|..+++++
T Consensus 207 ~~~~~~~~~~~~~~~~~p-------~~~~~l~sg~~dg--~v~~wd~~~~~~~~~~~~h~~~v~~v~-fsp~g~~~lasg 276 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLAWHP-------QQSEVFVFGDENG--TVSLVDTKSTSCVLSSAVHSQCVTGLV-FSPHSVPFLASL 276 (344)
T ss_dssp ECC----CCCEEEEEECS-------SCTTEEEEEETTS--EEEEEESCC--CCEEEECCSSCEEEEE-ECSSSSCCEEEE
T ss_pred eeecceeeccceeeeecC-------CCCcceEEeccCC--cEEEEECCCCcEEEEEcCCCCCEEEEE-EccCCCeEEEEE
Confidence 322111100000011222 2344666666677 89999987665 455666666677665 999997777777
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
..++. +.||.+.. + ++.++..+. .+..++|||||++|+.+.+.+. .|.+++..++
T Consensus 277 s~D~~--i~vwd~~~---~-----~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~---~v~~w~v~~~ 332 (344)
T 4gqb_B 277 SEDCS--LAVLDSSL---S-----ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH---QVVHHVVPTE 332 (344)
T ss_dssp ETTSC--EEEECTTC---C-----EEEEECCCSSCEEEEEECSSSTTEEEEEETTS---CEEEEECCC-
T ss_pred eCCCe--EEEEECCC---C-----cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC---eEEEEECCCC
Confidence 66654 67775432 2 445555544 4778999999998887776554 4888887554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-15 Score=176.46 Aligned_cols=264 Identities=13% Similarity=0.063 Sum_probs=179.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++|||||++|+..... ..|.+||+.+++... +..+. ..+....|+|
T Consensus 16 v~~i~~sp~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~~~------------------------~~v~~~~~s~- 65 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYS-----GRVEIWNYETQVEVRSIQVTE------------------------TPVRAGKFIA- 65 (814)
T ss_dssp EEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS------------------------SCEEEEEEEG-
T ss_pred eEEEEECCCCCEEEEEeCC-----CEEEEEECCCCceEEEEecCC------------------------CcEEEEEEeC-
Confidence 4889999999999987642 469999998887643 43322 4688999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCc-eeEEeeCCCCC
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINE-QRQLTHGANGN 212 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~-~~~lt~~~~~~ 212 (776)
||++|++. .++.|.+||+.+++....+..... .+..+.|||||+.|+.... +.|.+|++.++. ..+.......
T Consensus 66 --~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~- 141 (814)
T 3mkq_A 66 --RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH- 141 (814)
T ss_dssp --GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-
T ss_pred --CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-
Confidence 99999987 678899999998887645554443 4888999999999998875 579999999873 3332222111
Q ss_pred ceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
.+..+.|+| |++.|+....+ ..|.+||
T Consensus 142 ----------------~v~~~~~~p~~~~~l~~~~~d------------------------------------g~v~vwd 169 (814)
T 3mkq_A 142 ----------------FVMCVAFNPKDPSTFASGCLD------------------------------------RTVKVWS 169 (814)
T ss_dssp ----------------CEEEEEEETTEEEEEEEEETT------------------------------------SEEEEEE
T ss_pred ----------------cEEEEEEEcCCCCEEEEEeCC------------------------------------CeEEEEE
Confidence 145788999 78877776533 3589999
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEecc--CCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCceeecccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH--GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDC 368 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~ 368 (776)
+.+++...... ......+..+.|+| ||+.++... .+..|.+||+.++....... +...... -.
T Consensus 170 ~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~v~~---~~ 235 (814)
T 3mkq_A 170 LGQSTPNFTLT-------TGQERGVNYVDYYPLPDKPYMITAS----DDLTIKIWDYQTKSCVATLEGHMSNVSF---AV 235 (814)
T ss_dssp TTCSSCSEEEE-------CCCTTCCCEEEECCSTTCCEEEEEC----TTSEEEEEETTTTEEEEEEECCSSCEEE---EE
T ss_pred CCCCcceeEEe-------cCCCCCEEEEEEEECCCCCEEEEEe----CCCEEEEEECCCCcEEEEEcCCCCCEEE---EE
Confidence 98766433321 22335677899999 888777664 34579999999887644433 2222111 11
Q ss_pred cccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEE
Q 004067 369 FTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFT 431 (776)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~ 431 (776)
|+| ++.++++...+| .|++|++.+++ ...+..+...+..+. |+|+|+.+++.
T Consensus 236 ~~~--------~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~ 288 (814)
T 3mkq_A 236 FHP--------TLPIIISGSEDG--TLKIWNSSTYKVEKTLNVGLERSWCIA-THPTGRKNYIA 288 (814)
T ss_dssp ECS--------SSSEEEEEETTS--CEEEEETTTCSEEEEECCSSSSEEEEE-ECTTCGGGEEE
T ss_pred EcC--------CCCEEEEEeCCC--eEEEEECCCCcEEEEeecCCCcEEEEE-EccCCCceEEE
Confidence 223 233566666667 79999987654 344544444555554 88988754333
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-17 Score=163.85 Aligned_cols=206 Identities=12% Similarity=0.060 Sum_probs=136.0
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccc---cchhhhHHHHhC----CcEEEE
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN---TVDMRAQYLRSK----GILVWK 593 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~---~~~~~~~~l~~~----G~~v~~ 593 (776)
..+.+.+++.+.++ .+.+++|.|++.. ..+++|+|+++||+++... .|.. .....++.|++. +|+|++
T Consensus 38 ~g~~~~~~~~s~~~-~~~~~vy~P~~~~-~~~~~Pvlv~lHG~~~~~~---~~~~~~~~~~~~~~~l~~~g~~~~~ivv~ 112 (297)
T 1gkl_A 38 AGRIVKETYTGING-TKSLNVYLPYGYD-PNKKYNIFYLMHGGGENEN---TIFSNDVKLQNILDHAIMNGELEPLIVVT 112 (297)
T ss_dssp CCEEEEEEEEETTE-EEEEEEEECTTCC-TTSCCEEEEEECCTTCCTT---STTSTTTCHHHHHHHHHHTTSSCCEEEEE
T ss_pred CceEEEEEEEcCCC-EEEEEEEeCCCCC-CCCCCCEEEEECCCCCCcc---hhhcccchHHHHHHHHHHcCCCCCEEEEE
Confidence 44567888888775 8999999998863 2368999999999876542 2321 223345666665 599999
Q ss_pred ECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC------------CCCCcEEEEeechHHHHHHHHHhhCCC
Q 004067 594 LDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL------------AKVGHIGLYGWSYGGYLSAITLARFPD 661 (776)
Q Consensus 594 ~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~------------id~~~i~l~G~S~GG~~a~~~a~~~~~ 661 (776)
+|++|....+..+... ..+|+. .++.++.. .+..+++|+|+||||++|+.++.++|+
T Consensus 113 pd~~~~~~~~~~~~~~--------~~~~l~---~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~ 181 (297)
T 1gkl_A 113 PTFNGGNCTAQNFYQE--------FRQNVI---PFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLD 181 (297)
T ss_dssp CCSCSTTCCTTTHHHH--------HHHTHH---HHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTT
T ss_pred ecCcCCccchHHHHHH--------HHHHHH---HHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCch
Confidence 9998643222222110 123333 44444322 266789999999999999999999999
Q ss_pred ceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC-
Q 004067 662 VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR- 740 (776)
Q Consensus 662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~- 740 (776)
+|+++++.+|...+.... + .....+...-....+.+...++++.+|+.|.. ...+.++.+.|++.+
T Consensus 182 ~f~~~v~~sg~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~l~~~~G~~D~~--~~~~~~l~~~L~~~g~ 248 (297)
T 1gkl_A 182 YVAYFMPLSGDYWYGNSP--Q---------DKANSIAEAINRSGLSKREYFVFAATGSEDIA--YANMNPQIEAMKALPH 248 (297)
T ss_dssp TCCEEEEESCCCCBSSSH--H---------HHHHHHHHHHHHHTCCTTSCEEEEEEETTCTT--HHHHHHHHHHHHTSTT
T ss_pred hhheeeEeccccccCCcc--c---------hhhhHHHHHHhhccCCcCcEEEEEEeCCCccc--chhHHHHHHHHHHcCC
Confidence 999999999986542110 0 00000000000011112234667778999976 457889999999988
Q ss_pred ---------CCeEEEEecCCCCCC
Q 004067 741 ---------KPYEILIFPDERHMP 755 (776)
Q Consensus 741 ---------~~~~~~~~~~~~H~~ 755 (776)
.++++.++|+++|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 249 FDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp CCBBSCTTTCCEEEEEETTCCSSH
T ss_pred ccccccccCCceEEEECCCCCcCH
Confidence 589999999999964
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-15 Score=154.66 Aligned_cols=262 Identities=12% Similarity=0.099 Sum_probs=191.5
Q ss_pred EeecCCCceEEEEeC---CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC---------------cEE
Q 004067 132 WVKTSSKKKIIMVPL---PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC---------------ELH 193 (776)
Q Consensus 132 ~sp~~~dg~~l~~~~---~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~---------------~l~ 193 (776)
++. ||++|+|.. ++.||.++.+++..+ +|+... .--++++|++|+|+..+ .||
T Consensus 21 ~~~---~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~~~-----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy 91 (302)
T 3s25_A 21 FCE---SDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSNDT-----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLC 91 (302)
T ss_dssp EEE---ETTEEEEEEGGGTTEEEEEETTSCSCE-EEEEEE-----EEEEEECSSEEEEEEECC------CCSSCCSEEEE
T ss_pred EEE---eCCEEEEEeCCCCceEEEEcCCCCCCE-EccCCc-----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEE
Confidence 567 999999984 678999999999988 887532 24679999999999753 599
Q ss_pred EEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCccee
Q 004067 194 VLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDH 273 (776)
Q Consensus 194 ~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (776)
.+++++++.++|+... +..|+|+|++|+|......
T Consensus 92 ~i~~dg~~~~~l~~~~----------------------~~~~s~~g~~Iy~~~~~~~----------------------- 126 (302)
T 3s25_A 92 RIKRNGHGSTVLDPDP----------------------CIYASLIGNYIYYLHYDTQ----------------------- 126 (302)
T ss_dssp EEETTSCCCEEEECSC----------------------EEEEEEETTEEEEEEESSS-----------------------
T ss_pred EEeCCCCcceEeecCC----------------------ccEEEEeCCEEEEEeecCC-----------------------
Confidence 9999999988887643 3468999999999762111
Q ss_pred cCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 274 AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 274 ~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
....|+..++++...++|... .. ..|+|+|+.|+++.. ....|++++++++..++
T Consensus 127 ---------~~~~Iy~~~~dGs~~~~lt~~---------~~----~~~~~~g~~iy~t~~---g~~~Iy~~~l~g~~~~~ 181 (302)
T 3s25_A 127 ---------TATSLYRIRIDGEEKKKIKNH---------YL----FTCNTSDRYFYYNNP---KNGQLYRYDTASQSEAL 181 (302)
T ss_dssp ---------SCEEEEEEETTSCCCEEEESS---------CC----CCSEEETTEEEEECT---TTCCEEEEETTTTEEEE
T ss_pred ---------CCceEEEEECCCCCeEEEeCC---------Cc----eEeeEECCEEEEEeC---CCceEEEEECCCCCEEE
Confidence 116799999998888877442 11 457889999988854 34579999999998888
Q ss_pred EEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 354 ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
|++. .... | +.++++.++|+...++ .+|++++++|+..++|+.... .+++++|++||+...
T Consensus 182 l~~~--~~~~-------~----~~P~g~~iy~t~~~~~-~~I~~~~ldG~~~~~Lt~~~~-----~~~~~~g~~Iy~~~~ 242 (302)
T 3s25_A 182 FYDC--NCYK-------P----VVLDDTNVYYMDVNRD-NAIVHVNINNPNPVVLTEANI-----EHYNVYGSLIFYQRG 242 (302)
T ss_dssp EECS--CEEE-------E----EEEETTEEEEEEGGGT-TEEEEECSSSCCCEECSCSCE-----EEEEEETTEEEEEEC
T ss_pred EeCC--Cccc-------e----eeecCCEEEEEEcCCC-cEEEEEECCCCCeEEEeCCCc-----ceEEECCCEEEEEEC
Confidence 8542 2111 1 0123556777665544 799999999999999987542 458999999999865
Q ss_pred cCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
... ..|+.+++ +|. ..++|+... ..++++.+.+|.|+-.... .|+++.. +|+..++|.
T Consensus 243 ~~~---~~i~~~~~--DG~----~r~~l~~~~---~~~i~i~~d~Iy~td~~~~---~i~~~~~-dGs~~~~l~ 300 (302)
T 3s25_A 243 GDN---PALCVVKN--DGT----GFKELAKGE---FCNINVTSQYVYFTDFVSN---KEYCTST-QNPDTIKAL 300 (302)
T ss_dssp SSS---CEEEEEET--TSC----CCEEEEESC---EEEEEECSSEEEEEETTTC---CEEEEES-SSCCSCEEC
T ss_pred CCC---cEEEEEEC--CCC----ccEEeeCCc---cceEEEeCCEEEEEECCCC---eEEEEEC-CCCCceEec
Confidence 543 48999999 776 456666542 2367889999999865433 3888875 555445443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-15 Score=156.17 Aligned_cols=292 Identities=13% Similarity=0.099 Sum_probs=179.5
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCCc--CcceEEEEecCCCceE------EeecCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDHS--LSRKVFSFDPKTCKQE------LVFSPPDGGLDENNISPEEKLRRERLRERGL 125 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~~--~~~~l~~~~~~~~~~~------~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 125 (776)
|..+..++|||||+.|+--..+... -.+.|.+|+++.+... .... ..++.+ ..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~--------~~l~~~-----------~~ 74 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSE--------FALEDN-----------DD 74 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEE--------EECCTT-----------SC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeE--------EEccCC-----------CC
Confidence 3445789999999999854322110 1235888887755321 0000 000000 01
Q ss_pred CeeeEEEeecCCCceEEEEe------------CCCcEEEEeCCCCccce-ecC-----C--CCCCCccCceeCCCCCEEE
Q 004067 126 GVTRYEWVKTSSKKKIIMVP------------LPDGIYFQDLSCSKPEL-KLS-----S--SSCSPVIDPHLSSDGTMIA 185 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~------------~~~~l~~~d~~~~~~~~-~l~-----~--~~~~~~~~~~~SpDg~~la 185 (776)
.+. .+++ +++.++.. .+..+.+|++++.+... .+. . .....+...+|||||+.++
T Consensus 75 ~v~--s~~~---~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 75 SPT--AIDA---SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp CCC--EEEE---ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred ceE--EEEe---CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence 233 4566 77777664 35567777776554321 111 1 1111245689999999998
Q ss_pred EEEC---CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCC
Q 004067 186 FVRD---CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGK 262 (776)
Q Consensus 186 ~~~~---~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 262 (776)
..+. +.|.+||+.+++.......... +..++|||||+.|+..+.+
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~~~~~------------------V~~v~fspdg~~l~s~s~~-------------- 197 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIETRGE------------------VKDLHFSTDGKVVAYITGS-------------- 197 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEECSSC------------------CCEEEECTTSSEEEEECSS--------------
T ss_pred EEECCCCCEEEEeECCCCcEEEEeCCCCc------------------eEEEEEccCCceEEeccce--------------
Confidence 8764 4599999999876554332221 5588999999999876531
Q ss_pred CCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEE
Q 004067 263 SSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVL 342 (776)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 342 (776)
.+.+|+..+++....... ..+...+..++|||||+.++..+........++
T Consensus 198 -----------------------~~~~~~~~~~~~~~~~~~------~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 198 -----------------------SLEVISTVTGSCIARKTD------FDKNWSLSKINFIADDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp -----------------------CEEEEETTTCCEEEEECC------CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred -----------------------eEEEEEeccCcceeeeec------CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence 246777777665443332 456677899999999998887776655566789
Q ss_pred EEECCCCceEEEEE-----eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-ecc-ccCCeEE
Q 004067 343 KFDIKTGQRKVILV-----EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPI-TEGDWMV 415 (776)
Q Consensus 343 ~~d~~~g~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~l-t~~~~~~ 415 (776)
.|+...+....+.. +...... -.|+| ++.++++...++ .|.+||+.+++. ..+ ..+...|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~V~~---~~~Sp--------dg~~lasgs~D~--~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRFKGITS---MDVDM--------KGELAVLASNDN--SIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSCSCEEE---EEECT--------TSCEEEEEETTS--CEEEEETTTTEEEEEETTSSSSCE
T ss_pred ecccccceecceeeeeecCCCCCeEe---EEECC--------CCCceEEEcCCC--EEEEEECCCCcEEEEecCcccCCE
Confidence 99987766543321 1111111 12333 344666666677 899999987764 443 4566677
Q ss_pred EEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 416 EQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 416 ~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
..+. |||||++|+ +++.++. ++||.++.
T Consensus 316 ~~v~-fSpdg~~la-S~S~D~t--vrvw~ip~ 343 (365)
T 4h5i_A 316 TEVT-ISPDSTYVA-SVSAANT--IHIIKLPL 343 (365)
T ss_dssp EEEE-ECTTSCEEE-EEETTSE--EEEEECCT
T ss_pred EEEE-ECCCCCEEE-EEeCCCe--EEEEEcCC
Confidence 7765 999999654 4555544 88988864
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=160.14 Aligned_cols=201 Identities=14% Similarity=-0.011 Sum_probs=132.3
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+.+.. .|..++..|++.||.|+++|+||+|.|..... ..+.++++.+.+..+++.-.
T Consensus 4 ~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~l~ 69 (257)
T 3c6x_A 4 AHFVLIHTICHGAW-------IWHKLKPLLEALGHKVTALDLAASGVDPRQIE-------EIGSFDEYSEPLLTFLEALP 69 (257)
T ss_dssp CEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHTHHHHHHHHTSC
T ss_pred CcEEEEcCCccCcC-------CHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcc-------cccCHHHHHHHHHHHHHhcc
Confidence 67999999765543 34556888989999999999999998864211 01235566655555555421
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC-c--c--c----cc---cccccc-----------------
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS-W--D--G----YD---TFYTEK----------------- 685 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~-~--~--~----~~---~~~~~~----------------- 685 (776)
..+++.|+||||||++++.++.++|++++++|+.++... . . . .. ..+...
T Consensus 70 -~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (257)
T 3c6x_A 70 -PGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKL 148 (257)
T ss_dssp -TTCCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEEC
T ss_pred -ccCCeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccc
Confidence 135899999999999999999999999999998765321 0 0 0 00 000000
Q ss_pred --------ccCC-CCCCccc---hhcC-----------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCC
Q 004067 686 --------YMGL-PSEDPVG---YEYS-----------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 742 (776)
Q Consensus 686 --------~~~~-~~~~~~~---~~~~-----------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 742 (776)
+... +...... .... .........+.|+|+++|++|..+|+...+.+.+.+ .+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~----~~ 224 (257)
T 3c6x_A 149 GFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENY----KP 224 (257)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHS----CC
T ss_pred cHHHHHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccCHHHHHHHHHHC----CC
Confidence 0000 0000000 0000 000000012579999999999999998888777765 45
Q ss_pred eEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 743 YEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 743 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.+++++|++||.. ..+.++++.+.+.+|++++
T Consensus 225 ~~~~~i~~~gH~~-~~e~P~~~~~~l~~f~~~~ 256 (257)
T 3c6x_A 225 DKVYKVEGGDHKL-QLTKTKEIAEILQEVADTY 256 (257)
T ss_dssp SEEEECCSCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred CeEEEeCCCCCCc-ccCCHHHHHHHHHHHHHhc
Confidence 7999999999987 6678899999999999764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-15 Score=155.71 Aligned_cols=279 Identities=6% Similarity=-0.010 Sum_probs=167.3
Q ss_pred eeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 60 IGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
..|++++++++.....+ ..|.+||+++++......... ... ...|+| ||
T Consensus 3 ~~~~~~~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~~-----------------------~~~-~~~~s~---dg 51 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHL----RRISFFSTDTLEILNQITLGY-----------------------DFV-DTAITS---DC 51 (331)
T ss_dssp ----CCCCEEEEEEGGG----TEEEEEETTTCCEEEEEECCC-----------------------CEE-EEEECS---SS
T ss_pred eeEcCCCCEEEEEecCC----CeEEEEeCcccceeeeEEccC-----------------------Ccc-eEEEcC---CC
Confidence 45788888766554433 579999999998865553211 234 789999 99
Q ss_pred eEEEEe--CCCcEEEEeCCCCcc-ceecCCCCCCCccC-ceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCC
Q 004067 140 KIIMVP--LPDGIYFQDLSCSKP-ELKLSSSSCSPVID-PHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 140 ~~l~~~--~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~-~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~ 211 (776)
++|++. .++.|++||+.+++. ...+.... .... +.|||||++|+..... .|+++++++++..+....+..
T Consensus 52 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 129 (331)
T 3u4y_A 52 SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ--SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD 129 (331)
T ss_dssp CEEEEEESTTCEEEEEECSSSSCEEEEEEECS--SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT
T ss_pred CEEEEEeCCCCeEEEEECCCCceeEEecccCC--CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC
Confidence 988876 356899999999886 42444433 2445 8999999999844334 699999999987665443321
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
...++|+|||++|++...... ..+.+|+
T Consensus 130 ------------------~~~~~~spdg~~l~~~~~~~~----------------------------------~~i~~~~ 157 (331)
T 3u4y_A 130 ------------------AVGIAISPNGNGLILIDRSSA----------------------------------NTVRRFK 157 (331)
T ss_dssp ------------------EEEEEECTTSSCEEEEEETTT----------------------------------TEEEEEE
T ss_pred ------------------ccceEECCCCCEEEEEecCCC----------------------------------ceEEEEE
Confidence 237889999998877654322 1145555
Q ss_pred cCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce---EEEEEeccCceeeccc
Q 004067 292 AAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR---KVILVEELDSWVNLHD 367 (776)
Q Consensus 292 ~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~---~~l~~~~~~~~~~~~~ 367 (776)
++... ....... ..........+.|||||+.+++... ....|++||+++++. ......... ...-
T Consensus 158 ~~~~g~~~~~~~~-----~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~---~~~~ 226 (331)
T 3u4y_A 158 IDADGVLFDTGQE-----FISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENITLLNAVGTNNL---PGTI 226 (331)
T ss_dssp ECTTCCEEEEEEE-----EECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCEEEEEEECSSC---CCCE
T ss_pred ECCCCcEeecCCc-----cccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccceeeeccCCCC---CceE
Confidence 54322 2111000 0112233578999999997766643 234699999998886 322222111 0111
Q ss_pred ccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccC-------C--eEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-------D--WMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~-------~--~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
.|+| +++.+|++.. +...|++|++++++.+.+... . ......+.|+|||++||+.....+.
T Consensus 227 ~~sp--------dg~~l~v~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~- 296 (331)
T 3u4y_A 227 VVSR--------DGSTVYVLTE-STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE- 296 (331)
T ss_dssp EECT--------TSSEEEEECS-SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE-
T ss_pred EECC--------CCCEEEEEEc-CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCc-
Confidence 1222 2334454433 334799999988776333211 0 0000113599999998888765542
Q ss_pred eeeEEEE
Q 004067 439 ESHLYCA 445 (776)
Q Consensus 439 ~~~l~~~ 445 (776)
+.+|.+
T Consensus 297 -v~v~d~ 302 (331)
T 3u4y_A 297 -LKVFTI 302 (331)
T ss_dssp -EEEEET
T ss_pred -EEEEEe
Confidence 455544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-14 Score=152.48 Aligned_cols=297 Identities=7% Similarity=-0.030 Sum_probs=188.5
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
..+....|+| ||+.|+.. .++.|++||+.+++....+..... .+..+.|+|||+.|+.... +.|.+|++.+++.
T Consensus 33 ~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 33 RPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp SCEEEEEECT---TSCEEEEEESSSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred ceEEEEEEcC---CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 3688999999 99999986 678999999998887745554443 4888999999999998875 5799999999877
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
......... +..+.|+|||+.|+....+...
T Consensus 109 ~~~~~~~~~------------------v~~~~~~~~~~~l~~~~~~~~~------------------------------- 139 (369)
T 3zwl_B 109 VATWKSPVP------------------VKRVEFSPCGNYFLAILDNVMK------------------------------- 139 (369)
T ss_dssp EEEEECSSC------------------EEEEEECTTSSEEEEEECCBTT-------------------------------
T ss_pred EEEeecCCC------------------eEEEEEccCCCEEEEecCCccC-------------------------------
Confidence 655442221 4578899999999887643110
Q ss_pred CeEEEEEEEcCCCceE-EEEcccCCC--CCCCCc--ceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-CceEEEEE
Q 004067 283 VKVRLGVVSAAGGPVS-WMDLQCGGT--DQNYDE--EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVILV 356 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~-~l~~~~~~~--~~~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~~~l~~ 356 (776)
....|.+||+.++... .+......+ ....+. ..+..++|+|||+.++... .+..|++||+.+ +.......
T Consensus 140 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH----KDGKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE----TTSEEEEEETTTTTEEEEEEE
T ss_pred CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc----CCCEEEEEECCCCcEeEEEEe
Confidence 0134667776654311 010000000 001222 2788999999999877665 345799999988 44433333
Q ss_pred -eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 357 -EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
+...... -.|+| ++.++++...+| .|++||+.+++..........+.... |+++++.+++.....
T Consensus 216 ~~~~~v~~---~~~~~--------~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 216 LHEKSISD---MQFSP--------DLTYFITSSRDT--NSFLVDVSTLQVLKKYETDCPLNTAV-ITPLKEFIILGGGQE 281 (369)
T ss_dssp CCSSCEEE---EEECT--------TSSEEEEEETTS--EEEEEETTTCCEEEEEECSSCEEEEE-ECSSSSEEEEEECCC
T ss_pred cCCCceeE---EEECC--------CCCEEEEecCCc--eEEEEECCCCceeeeecCCCCceeEE-ecCCCceEEEeecCC
Confidence 2222111 11222 234556666667 89999988776544444444555554 999999888876543
Q ss_pred CC---------ceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCc
Q 004067 436 GP---------LESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 501 (776)
Q Consensus 436 ~~---------~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~ 501 (776)
.. ....++..++. .+. ....+..+. .+..+.|+|||+.|+..... ..|.+|++..+.
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~-~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~ 348 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKI-FEE----EIGRVQGHFGPLNTVAISPQGTSYASGGED----GFIRLHHFEKSY 348 (369)
T ss_dssp -------------CEEEEEETT-TCC----EEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEEEEEECHHH
T ss_pred CceEEEEecCCCcceeEEEecC-CCc----chhheecccCcEEEEEECCCCCEEEEEcCC----CeEEEEECcccc
Confidence 20 01133444442 222 444555443 46788999999988866443 469999986654
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=177.65 Aligned_cols=228 Identities=13% Similarity=0.089 Sum_probs=146.7
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhH---HHHhCCcEEEEECCCC--CCCCchhhhh
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ---YLRSKGILVWKLDNRG--TARRGLKFEA 608 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~---~l~~~G~~v~~~d~rg--~g~~~~~~~~ 608 (776)
|..+++..+.+.+. .+.|+||++||.+++......| ..++. .|...||.|+++|+|| +|.++.....
T Consensus 93 g~~l~y~~~G~~~~----~~~p~vvllHG~~~~~~~~~~w----~~~~~~~~~L~~~~~~Vi~~D~~G~~~G~S~~~~~~ 164 (444)
T 2vat_A 93 DVPVAYKSWGRMNV----SRDNCVIVCHTLTSSAHVTSWW----PTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPCSPD 164 (444)
T ss_dssp EEEEEEEEESCCCT----TSCCEEEEECCTTCCSCGGGTC----GGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTTSBC
T ss_pred ceeEEEEEecCCCC----CCCCeEEEECCCCcccchhhHH----HHhcCccchhhccCCEEEEecCCCCCCCCCCCCCCC
Confidence 34566666665432 2348999999987765421113 22232 4667899999999999 5766431100
Q ss_pred hh-------hhccCCccHHHHHHHHHHHHHcCCCCCCc-EEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-
Q 004067 609 SI-------KHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD- 679 (776)
Q Consensus 609 ~~-------~~~~~~~~~~D~~~~i~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~- 679 (776)
.. ...+....++|+.+.+..+++.. ..++ ++++||||||++++.+|.++|++++++|+.++........
T Consensus 165 ~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~l--~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~~~~~~~ 242 (444)
T 2vat_A 165 PDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRL--GVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCRQSGWCA 242 (444)
T ss_dssp TTTC--CBCGGGCCCCCHHHHHHHHHHHHHHH--TCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSBCCHHHH
T ss_pred cccccccccccccccccHHHHHHHHHHHHHhc--CCccceEEEEECHHHHHHHHHHHhChHhhheEEEEeccccCCccch
Confidence 00 00111245677777776666543 3357 9999999999999999999999999999988765321000
Q ss_pred ---------------------------------------------ccccccccCCCC-----------------------
Q 004067 680 ---------------------------------------------TFYTEKYMGLPS----------------------- 691 (776)
Q Consensus 680 ---------------------------------------------~~~~~~~~~~~~----------------------- 691 (776)
..+...+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (444)
T 2vat_A 243 AWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGN 322 (444)
T ss_dssp HHHHHHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC---------------------
T ss_pred hHHHHHHHHHhcCCccccccccccCCcccchhHHHhhhhccccChHHHHHHhccCccccccccccccccccccccccccc
Confidence 000001111100
Q ss_pred --------CCccch---------h---------------cC--------ChhhhhccCCCcEEEEecCCCCccChHHHHH
Q 004067 692 --------EDPVGY---------E---------------YS--------SVMHHVHKMKGKLLLVHGMIDENVHFRHTAR 731 (776)
Q Consensus 692 --------~~~~~~---------~---------------~~--------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~ 731 (776)
...+.+ . .. +....+.++++|+|+++|++|..+++..+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~i~~PvLvi~G~~D~~~p~~~~~~ 402 (444)
T 2vat_A 323 SHRAGQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVE 402 (444)
T ss_dssp ------CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTCSSSCHHHHHH
T ss_pred cccccCchhhHHHHHHHHHHHHhhccCccHHHHHHHHhhhhhccccccccHHHHhhcCCCCEEEEEeCCCCCCCHHHHHH
Confidence 000000 0 00 1344567889999999999999999998888
Q ss_pred HHHHHHHCCCCeEEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 732 LINALVAARKPYEILIFP-DERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 732 ~~~~l~~~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+.+.+ .+.++++++ ++||.. ..+..+++.+.+.+||++++
T Consensus 403 l~~~~----p~~~~~~i~~~~GH~~-~~e~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 403 MGRSI----PNSRLCVVDTNEGHDF-FVMEADKVNDAVRGFLDQSL 443 (444)
T ss_dssp HHHHS----TTEEEEECCCSCGGGH-HHHTHHHHHHHHHHHHTC--
T ss_pred HHHHC----CCcEEEEeCCCCCcch-HHhCHHHHHHHHHHHHHHhc
Confidence 87765 468999999 899986 44668899999999998764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-15 Score=156.99 Aligned_cols=274 Identities=14% Similarity=0.102 Sum_probs=189.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
++.+.|||||+.|+-.+.+ ..|.+||+.+++... +..| ...+....|+|
T Consensus 111 V~~~~~~p~~~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~h------------------------~~~V~~v~~~~- 160 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASED-----ATIKVWDYETGDFERTLKGH------------------------TDSVQDISFDH- 160 (410)
T ss_dssp EEEEEECSSSSEEEEEESS-----SCEEEEETTTCCCCEEECCC------------------------SSCEEEEEECT-
T ss_pred EEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEecc------------------------CCcEEEEEEcC-
Confidence 5688999999999865542 469999999887644 3332 24688999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
||+.|+.. .++.|.+||+.+++....+..+. ..+....|+|||+.|+..+. +.|.+||+.++..........
T Consensus 161 --~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~--- 234 (410)
T 1vyh_C 161 --SGKLLASCSADMTIKLWDFQGFECIRTMHGHD-HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--- 234 (410)
T ss_dssp --TSSEEEEEETTSCCCEEETTSSCEEECCCCCS-SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS---
T ss_pred --CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC---
Confidence 99988876 78899999999887663444333 34888999999999888775 579999999887543322211
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+ +..+.|+|||+.|+..+.+ ..|.+||+.
T Consensus 235 ------~~--------v~~~~~~~~g~~l~s~s~D------------------------------------~~v~vwd~~ 264 (410)
T 1vyh_C 235 ------EW--------VRMVRPNQDGTLIASCSND------------------------------------QTVRVWVVA 264 (410)
T ss_dssp ------SC--------EEEEEECTTSSEEEEEETT------------------------------------SCEEEEETT
T ss_pred ------cc--------EEEEEECCCCCEEEEEcCC------------------------------------CeEEEEECC
Confidence 11 3467899999988876643 237899999
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccC--------------------CeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHG--------------------NILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpD--------------------g~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
+++....- ..+...+..+.|+|+ |.+++..+ .+..|.+||+.++....
T Consensus 265 ~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs----~D~~i~iwd~~~~~~~~ 332 (410)
T 1vyh_C 265 TKECKAEL--------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS----RDKTIKMWDVSTGMCLM 332 (410)
T ss_dssp TCCEEEEE--------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE----TTSEEEEEETTTTEEEE
T ss_pred CCceeeEe--------cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe----CCCeEEEEECCCCceEE
Confidence 88765431 456677899999997 44565554 45569999999887544
Q ss_pred EEE-eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEE
Q 004067 354 ILV-EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFT 431 (776)
Q Consensus 354 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~ 431 (776)
... +...... -.|+| ++.++++...+| .|++||..+++ ...+..+...+..+. |++++..|+ +
T Consensus 333 ~~~~h~~~v~~---v~~~~--------~g~~l~s~s~D~--~i~vwd~~~~~~~~~~~~h~~~v~~l~-~~~~~~~l~-s 397 (410)
T 1vyh_C 333 TLVGHDNWVRG---VLFHS--------GGKFILSCADDK--TLRVWDYKNKRCMKTLNAHEHFVTSLD-FHKTAPYVV-T 397 (410)
T ss_dssp EEECCSSCEEE---EEECS--------SSSCEEEEETTT--EEEEECCTTSCCCEEEECCSSCEEEEE-ECSSSSCEE-E
T ss_pred EEECCCCcEEE---EEEcC--------CCCEEEEEeCCC--eEEEEECCCCceEEEEcCCCCcEEEEE-EcCCCCEEE-E
Confidence 333 3222111 12333 334566666677 89999987664 455666666677665 999998654 4
Q ss_pred EccCCCceeeEEEE
Q 004067 432 GTLDGPLESHLYCA 445 (776)
Q Consensus 432 ~~~~~~~~~~l~~~ 445 (776)
++.++ .+.+|.+
T Consensus 398 gs~D~--~i~vW~~ 409 (410)
T 1vyh_C 398 GSVDQ--TVKVWEC 409 (410)
T ss_dssp EETTS--EEEEEC-
T ss_pred EeCCC--cEEEEeC
Confidence 44444 3778764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=150.08 Aligned_cols=279 Identities=12% Similarity=0.114 Sum_probs=183.0
Q ss_pred CCeeeEEEeec-CCCceEEEEe-CCCcEEEEeCCCCccce--ecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC
Q 004067 125 LGVTRYEWVKT-SSKKKIIMVP-LPDGIYFQDLSCSKPEL--KLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~-~~dg~~l~~~-~~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~ 199 (776)
..+....|+|. ..+++.|+.. .++.|.+||+.+++... .+..... .+..+.|+|+++.++..+. +.|.+||+.+
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~-~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~ 111 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL-GVVSVDISHTLPIAASSSLDAHIRLWDLEN 111 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC-CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 47889999981 1135566654 78899999998776431 2333333 4788999999998888774 5799999998
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
++.......... .+..++|+|||+.|+....+
T Consensus 112 ~~~~~~~~~~~~-----------------~~~~~~~spdg~~l~~g~~d------------------------------- 143 (321)
T 3ow8_A 112 GKQIKSIDAGPV-----------------DAWTLAFSPDSQYLATGTHV------------------------------- 143 (321)
T ss_dssp TEEEEEEECCTT-----------------CCCCEEECTTSSEEEEECTT-------------------------------
T ss_pred CCEEEEEeCCCc-----------------cEEEEEECCCCCEEEEEcCC-------------------------------
Confidence 876443332211 13468899999998876532
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-ec
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EE 358 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~ 358 (776)
..+.+|++.+++..... ..+...+..++|+|||+.|+... .+..|.+||+.+++...... +.
T Consensus 144 -----g~v~i~~~~~~~~~~~~--------~~~~~~v~~~~~spdg~~lasg~----~dg~i~iwd~~~~~~~~~~~~h~ 206 (321)
T 3ow8_A 144 -----GKVNIFGVESGKKEYSL--------DTRGKFILSIAYSPDGKYLASGA----IDGIINIFDIATGKLLHTLEGHA 206 (321)
T ss_dssp -----SEEEEEETTTCSEEEEE--------ECSSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEEEEECCCS
T ss_pred -----CcEEEEEcCCCceeEEe--------cCCCceEEEEEECCCCCEEEEEc----CCCeEEEEECCCCcEEEEEcccC
Confidence 35789999887754331 23455688999999999888765 34569999999887644333 22
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
..... -.|+| ++.++++...+| .|.+||+..++ ...+..+...+..+. |+|+|+.|+..+ .++.
T Consensus 207 ~~v~~---l~~sp--------d~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~-~sp~~~~l~s~s-~D~~ 271 (321)
T 3ow8_A 207 MPIRS---LTFSP--------DSQLLVTASDDG--YIKIYDVQHANLAGTLSGHASWVLNVA-FCPDDTHFVSSS-SDKS 271 (321)
T ss_dssp SCCCE---EEECT--------TSCEEEEECTTS--CEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSEEEEEE-TTSC
T ss_pred CceeE---EEEcC--------CCCEEEEEcCCC--eEEEEECCCcceeEEEcCCCCceEEEE-ECCCCCEEEEEe-CCCc
Confidence 22111 11333 234666666677 79999987655 445665665666654 999999755444 4433
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+.+|.+. .+. .+..+..+. .+..+.|+|||+.|+..... ..|.+||.
T Consensus 272 --v~iwd~~---~~~----~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d----~~i~vwd~ 319 (321)
T 3ow8_A 272 --VKVWDVG---TRT----CVHTFFDHQDQVWGVKYNGNGSKIVSVGDD----QEIHIYDC 319 (321)
T ss_dssp --EEEEETT---TTE----EEEEECCCSSCEEEEEECTTSSEEEEEETT----CCEEEEEC
T ss_pred --EEEEeCC---CCE----EEEEEcCCCCcEEEEEECCCCCEEEEEeCC----CeEEEEeC
Confidence 7787664 232 445555443 47789999999988765433 24777774
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-14 Score=148.67 Aligned_cols=269 Identities=13% Similarity=0.051 Sum_probs=177.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+-.+. ...|.+||+.+++........ ...+....|+|
T Consensus 16 V~~~~fsp~~~~l~s~~~-----dg~v~lWd~~~~~~~~~~~~~-----------------------~~~v~~~~~~~-- 65 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLY-----SGRVELWNYETQVEVRSIQVT-----------------------ETPVRAGKFIA-- 65 (304)
T ss_dssp EEEEEECSSSSEEEEEET-----TSEEEEEETTTTEEEEEEECC-----------------------SSCEEEEEEEG--
T ss_pred eEEEEECCCCCEEEEEcC-----CCcEEEEECCCCceeEEeecc-----------------------CCcEEEEEEeC--
Confidence 588999999999986554 246999999988764333211 13678899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||+.|+.. .++.|.+||+.+++....+..+.. .+..++|+||++.|+..+. +.|.+|++.++.....+..+..
T Consensus 66 -~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~--- 140 (304)
T 2ynn_A 66 -RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--- 140 (304)
T ss_dssp -GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC---
T ss_pred -CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC-cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC---
Confidence 99999876 678899999999887645554443 4888999999999888775 5799999998744322222211
Q ss_pred ecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
..+..++|+| |++.|+..+.+ ..|.+||+.
T Consensus 141 -------------~~v~~v~~~p~~~~~l~sgs~D------------------------------------~~v~iwd~~ 171 (304)
T 2ynn_A 141 -------------HFVMCVAFNPKDPSTFASGCLD------------------------------------RTVKVWSLG 171 (304)
T ss_dssp -------------SCEEEEEECTTCTTEEEEEETT------------------------------------SEEEEEETT
T ss_pred -------------CcEEEEEECCCCCCEEEEEeCC------------------------------------CeEEEEECC
Confidence 1145788999 56777766543 358999987
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEecc--CCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCceeecccccc
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMH--GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCFT 370 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~ 370 (776)
+++...... ..+...+..+.|+| |+++++..+ .+..|.+||+.+++...... +...... -.|+
T Consensus 172 ~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~s~s----~D~~i~iWd~~~~~~~~~~~~h~~~v~~---~~~~ 237 (304)
T 2ynn_A 172 QSTPNFTLT-------TGQERGVNYVDYYPLPDKPYMITAS----DDLTIKIWDYQTKSCVATLEGHMSNVSF---AVFH 237 (304)
T ss_dssp CSSCSEEEE-------CCCTTCEEEEEECCSTTCCEEEEEE----TTSEEEEEETTTTEEEEEEECCSSCEEE---EEEC
T ss_pred CCCccceec-------cCCcCcEEEEEEEEcCCCCEEEEEc----CCCeEEEEeCCCCccceeeCCCCCCEEE---EEEC
Confidence 665332211 23344566778876 677777665 45679999999887644333 3322221 1233
Q ss_pred cCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEE-EEEEcc
Q 004067 371 PLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQV-YFTGTL 434 (776)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i-~~~~~~ 434 (776)
| ++.++++...+| .|.+||..+++. +.+..+...+..+. ++|+|+.. ++.+..
T Consensus 238 p--------~~~~l~s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 238 P--------TLPIIISGSEDG--TLKIWNSSTYKVEKTLNVGLERSWCIA-THPTGRKNYIASGFD 292 (304)
T ss_dssp S--------SSSEEEEEETTS--CEEEEETTTCCEEEEECCSSSSEEEEE-ECTTCGGGCEEEEET
T ss_pred C--------CCCEEEEEcCCC--eEEEEECCCCceeeeccCCCccEEEEE-ECCCCCceEEEEecC
Confidence 3 233666666777 899999887654 45555444445443 67777544 444433
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-15 Score=172.96 Aligned_cols=248 Identities=10% Similarity=0.019 Sum_probs=170.4
Q ss_pred CeeeEEEeecCCCceEEEEeC------CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC---------
Q 004067 126 GVTRYEWVKTSSKKKIIMVPL------PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC--------- 190 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~------~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~--------- 190 (776)
.+..+.||| ||++|+|.. ..+|+++|+++++.. ............+.|||||+.|+|++..
T Consensus 122 ~~~~~~~SP---DG~~la~~~~~~G~~~~~i~v~dl~tg~~~-~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 122 SLGTWAVSW---DGKKVAFAQKPNAADEAVLHVIDVDSGEWS-KVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp EEEEEEECT---TSSEEEEEEEETTCSCCEEEEEETTTCCBC-SSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred EEEEEEECC---CCCEEEEEECCCCCceEEEEEEECCCCCCc-CCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 366789999 999999972 257999999999865 2222222223679999999999999863
Q ss_pred -----cEEEEecCCCce--eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCC
Q 004067 191 -----ELHVLNLLINEQ--RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKS 263 (776)
Q Consensus 191 -----~l~~~~l~~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 263 (776)
+||++++.+++. +.+...... ..+ +..+.|||||++|++.+.+..
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~-------~~~--------~~~~~~SpDG~~l~~~~~~~~------------- 249 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGD-------PTT--------FLQSDLSRDGKYLFVYILRGW------------- 249 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCC-------TTC--------EEEEEECTTSCCEEEEEEETT-------------
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCC-------CEE--------EEEEEECCCCCEEEEEEeCCC-------------
Confidence 299999998874 344333221 001 336789999999999875431
Q ss_pred CCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEE
Q 004067 264 SVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 264 ~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 343 (776)
...+|++++..+++.+.+... ......+.| +||+ +++.++++.....|++
T Consensus 250 -------------------~~~~l~~~~~~~~~~~~l~~~---------~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~ 299 (695)
T 2bkl_A 250 -------------------SENDVYWKRPGEKDFRLLVKG---------VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFE 299 (695)
T ss_dssp -------------------TEEEEEEECTTCSSCEEEEEC---------SSCCEEEEE-ETTE-EEEEECTTCTTCEEEE
T ss_pred -------------------CceEEEEEcCCCCceEEeecC---------CCceEEEEe-cCCc-EEEEECCCCCCCEEEE
Confidence 125788998878887777432 223345556 8888 8888776656788999
Q ss_pred EECCCCce---EEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccC-CeEEEEEE
Q 004067 344 FDIKTGQR---KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-DWMVEQIV 419 (776)
Q Consensus 344 ~d~~~g~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~-~~~~~~~~ 419 (776)
+|+++++. +.++.+.....+.. +++.++.+++....++..+|++++++|+..+.++.. ...+..+
T Consensus 300 ~d~~~~~~~~~~~l~~~~~~~~l~~----------~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~- 368 (695)
T 2bkl_A 300 VDPAKPARASWKEIVPEDSSASLLS----------VSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNL- 368 (695)
T ss_dssp EBTTBCSGGGCEEEECCCSSCEEEE----------EEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCC-
T ss_pred EeCCCCCccCCeEEecCCCCCeEEE----------EEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEe-
Confidence 99988763 66665432211110 133466788888888999999999988777777654 3334433
Q ss_pred eecCCCcEEEEEEcc-CCCceeeEEEEEeC
Q 004067 420 GVNEASGQVYFTGTL-DGPLESHLYCAKLY 448 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~-~~~~~~~l~~~~~~ 448 (776)
.+++|++.++|..+. ..| ..+|.+++.
T Consensus 369 ~~s~d~~~l~~~~ss~~~P--~~v~~~d~~ 396 (695)
T 2bkl_A 369 MGLEDLDDAYYVFTSFTTP--RQIYKTSVS 396 (695)
T ss_dssp BSCTTCSEEEEEEEETTEE--EEEEEEETT
T ss_pred ecCCCCCEEEEEEcCCCCC--CEEEEEECC
Confidence 488999988888654 333 578888873
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-15 Score=155.20 Aligned_cols=282 Identities=9% Similarity=0.028 Sum_probs=177.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE--eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL--VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~--l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+..++|||||++||..+.+ ..|.+|++++++... .... .+...+....|+|
T Consensus 19 v~~l~~sp~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~----------------------~h~~~v~~~~~sp 71 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSE----------------------GHQRTVRKVAWSP 71 (345)
T ss_dssp EEEEEECTTSSCEEEEETT-----SCEEEEEEETTEEEEEEEECS----------------------SCSSCEEEEEECT
T ss_pred EEEEEECCCCCEEEEEcCC-----CeEEEEEcCCCcceeeeeecc----------------------ccCCcEEEEEECC
Confidence 3678999999999966543 469999998876321 2110 0124688999999
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE-Eee-C
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ-LTH-G 208 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~-lt~-~ 208 (776)
||++|+.. .++.+.+||+.++... ..+.... ..+..++|+|||+.|+..+. +.|.+|++.++.... +.. .
T Consensus 72 ---~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 147 (345)
T 3fm0_A 72 ---CGNYLASASFDATTCIWKKNQDDFECVTTLEGHE-NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147 (345)
T ss_dssp ---TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred ---CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC-CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec
Confidence 99999976 6889999999877533 1344333 34788999999999998875 579999998764322 211 1
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
+.. ..+..+.|+|||+.|+..+.+ ..|.
T Consensus 148 ~h~----------------~~v~~~~~~p~~~~l~s~s~d------------------------------------~~i~ 175 (345)
T 3fm0_A 148 SHT----------------QDVKHVVWHPSQELLASASYD------------------------------------DTVK 175 (345)
T ss_dssp CCC----------------SCEEEEEECSSSSCEEEEETT------------------------------------SCEE
T ss_pred CcC----------------CCeEEEEECCCCCEEEEEeCC------------------------------------CcEE
Confidence 110 114578899999998877643 2368
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc-------------eEEEE
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-------------RKVIL 355 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~-------------~~~l~ 355 (776)
+||..+++...+..- ..+...+..++|+|||+.|+..+ .+..|.+||...+. .+.+.
T Consensus 176 ~w~~~~~~~~~~~~~------~~h~~~v~~l~~sp~g~~l~s~s----~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 176 LYREEEDDWVCCATL------EGHESTVWSLAFDPSGQRLASCS----DDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEEEETTEEEEEEEE------CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEEecCCCEEEEEEe------cCCCCceEEEEECCCCCEEEEEe----CCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 888887764332221 46677899999999999887766 34457777752211 11111
Q ss_pred Ee----ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee----------eccccCCeEEEEEEee
Q 004067 356 VE----ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL----------GPITEGDWMVEQIVGV 421 (776)
Q Consensus 356 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~----------~~lt~~~~~~~~~~~~ 421 (776)
.- ....+.. .|++ .+..++++..++ .|.+|+.+.+.. ..+..+...+..+. |
T Consensus 246 ~~~~~h~~~v~~v---~~~~--------~~~~l~s~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~-~ 311 (345)
T 3fm0_A 246 TLSGFHSRTIYDI---AWCQ--------LTGALATACGDD--AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA-W 311 (345)
T ss_dssp EECSSCSSCEEEE---EECT--------TTCCEEEEETTS--CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE-E
T ss_pred EecCCCCCcEEEE---EEec--------CCCEEEEEeCCC--eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE-E
Confidence 11 1111110 1222 223445555566 566666544321 11123444566654 9
Q ss_pred cCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 422 NEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 422 s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+|++..++++++.++. +.||++..
T Consensus 312 ~p~~~~~laS~s~Dg~--v~~W~~~~ 335 (345)
T 3fm0_A 312 NPKEPGLLASCSDDGE--VAFWKYQR 335 (345)
T ss_dssp CSSSTTEEEEEETTSC--EEEEEECC
T ss_pred eCCCceEEEEcCCCCc--EEEEEecC
Confidence 9998656777766654 88998873
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-17 Score=166.90 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=142.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|..+++..+.+ .|+||++||.+++.. .| ..++..|++ +|.|+++|+||+|.+......
T Consensus 15 ~~g~~l~~~~~g~---------~~~vv~lHG~~~~~~---~~----~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~--- 74 (297)
T 2qvb_A 15 IAGKRMAYIDEGK---------GDAIVFQHGNPTSSY---LW----RNIMPHLEG-LGRLVACDLIGMGASDKLSPS--- 74 (297)
T ss_dssp ETTEEEEEEEESS---------SSEEEEECCTTCCGG---GG----TTTGGGGTT-SSEEEEECCTTSTTSCCCSSC---
T ss_pred ECCEEEEEEecCC---------CCeEEEECCCCchHH---HH----HHHHHHHhh-cCeEEEEcCCCCCCCCCCCCc---
Confidence 3788888887642 278999999877654 23 334566665 499999999999988643110
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCC-CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC---ccccccc------
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKV-GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYDTF------ 681 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~-~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~---~~~~~~~------ 681 (776)
.......+++.+.+..+++.. +. +++.++||||||.+++.++.++|++++++|+.+|... +......
T Consensus 75 -~~~~~~~~~~~~~~~~~l~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 151 (297)
T 2qvb_A 75 -GPDRYSYGEQRDFLFALWDAL--DLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQ 151 (297)
T ss_dssp -STTSSCHHHHHHHHHHHHHHT--TCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCGGGSCGGGHHHHH
T ss_pred -cccCcCHHHHHHHHHHHHHHc--CCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccCCCCChHHHHHHH
Confidence 011134566666666555543 34 6899999999999999999999999999999887653 1100000
Q ss_pred ----------------cccccc----CCCCC----------------Cc----cchhc--------------CChhhhhc
Q 004067 682 ----------------YTEKYM----GLPSE----------------DP----VGYEY--------------SSVMHHVH 707 (776)
Q Consensus 682 ----------------~~~~~~----~~~~~----------------~~----~~~~~--------------~~~~~~~~ 707 (776)
+...+. ..... .. ..+.. .+....+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (297)
T 2qvb_A 152 GFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWLE 231 (297)
T ss_dssp HHTSTTHHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhhHHHHHHHHhhcc
Confidence 000000 00000 00 00000 01133456
Q ss_pred cCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 708 KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 708 ~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++++|+|+++|++|..+++.....+.+.+ .+ +++++ ++||.+ ..+..+++.+.+.+||+++
T Consensus 232 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~-~~~~p~~~~~~i~~fl~~~ 292 (297)
T 2qvb_A 232 ETDMPKLFINAEPGAIITGRIRDYVRSWP----NQ-TEITV-PGVHFV-QEDSPEEIGAAIAQFVRRL 292 (297)
T ss_dssp HCCSCEEEEEEEECSSSCHHHHHHHHTSS----SE-EEEEE-EESSCG-GGTCHHHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCCCcCCHHHHHHHHHHc----CC-eEEEe-cCccch-hhhCHHHHHHHHHHHHHHH
Confidence 78899999999999999988777776544 34 88889 999986 5677889999999999864
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-17 Score=162.95 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=137.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|.++++..+.+++ .|+||++||.+++.. .|..++..|++ +|.|+++|+||+|.|....
T Consensus 7 ~g~~l~~~~~g~~~-------~~~vv~lHG~~~~~~-------~~~~~~~~L~~-~~~v~~~D~~G~G~S~~~~------ 65 (264)
T 3ibt_A 7 NGTLMTYSESGDPH-------APTLFLLSGWCQDHR-------LFKNLAPLLAR-DFHVICPDWRGHDAKQTDS------ 65 (264)
T ss_dssp TTEECCEEEESCSS-------SCEEEEECCTTCCGG-------GGTTHHHHHTT-TSEEEEECCTTCSTTCCCC------
T ss_pred CCeEEEEEEeCCCC-------CCeEEEEcCCCCcHh-------HHHHHHHHHHh-cCcEEEEccccCCCCCCCc------
Confidence 67778877776532 378999999877654 23445677755 5999999999999887531
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCccc--------------
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG-------------- 677 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~~-------------- 677 (776)
.....+++.+.+..+.+.. +.+++.++||||||.+++.+|.++ |++++++|+.+|......
T Consensus 66 --~~~~~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 141 (264)
T 3ibt_A 66 --GDFDSQTLAQDLLAFIDAK--GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQLAEGQHPTE 141 (264)
T ss_dssp --SCCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSSCCHHHHHHHHHTTCTTT
T ss_pred --cccCHHHHHHHHHHHHHhc--CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCCcChhhcchhhcccChhh
Confidence 1234556666665555543 345899999999999999999999 999999999987651100
Q ss_pred ---ccccccccccCCCCC--------------Cccchh------------cCChhhhhccCCCcEEEEecCCCCcc--Ch
Q 004067 678 ---YDTFYTEKYMGLPSE--------------DPVGYE------------YSSVMHHVHKMKGKLLLVHGMIDENV--HF 726 (776)
Q Consensus 678 ---~~~~~~~~~~~~~~~--------------~~~~~~------------~~~~~~~~~~i~~P~lii~G~~D~~v--~~ 726 (776)
........++..... ....+. ..+....+.++++|+|+++|..|... ++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~~~~~~~~~ 221 (264)
T 3ibt_A 142 YVAGRQSFFDEWAETTDNADVLNHLRNEMPWFHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIYSQPLSQDYR 221 (264)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEECCSCCHHHH
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHhhhhccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEecCCccchhhH
Confidence 000000001000000 000000 01122556788999999987544433 34
Q ss_pred HHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 727 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.....+.+ ...+.++++++++||.+ ..+.++++.+.+.+||+
T Consensus 222 ~~~~~~~~----~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 222 QLQLEFAA----GHSWFHPRHIPGRTHFP-SLENPVAVAQAIREFLQ 263 (264)
T ss_dssp HHHHHHHH----HCTTEEEEECCCSSSCH-HHHCHHHHHHHHHHHTC
T ss_pred HHHHHHHH----hCCCceEEEcCCCCCcc-hhhCHHHHHHHHHHHHh
Confidence 43444433 34678999999999976 55678889999999985
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=147.34 Aligned_cols=181 Identities=10% Similarity=0.009 Sum_probs=121.5
Q ss_pred ceEEEEEcCCCCcccccccccccchhhh-HHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
.|+||++||.+++.. ..| .... ..|++.||.|+++|+|.+ ... ...++.+.+..+.+.
T Consensus 4 ~p~vv~~HG~~~~~~--~~~----~~~~~~~l~~~g~~v~~~d~~~~---~~~------------~~~~~~~~~~~~~~~ 62 (192)
T 1uxo_A 4 TKQVYIIHGYRASST--NHW----FPWLKKRLLADGVQADILNMPNP---LQP------------RLEDWLDTLSLYQHT 62 (192)
T ss_dssp CCEEEEECCTTCCTT--STT----HHHHHHHHHHTTCEEEEECCSCT---TSC------------CHHHHHHHHHTTGGG
T ss_pred CCEEEEEcCCCCCcc--hhH----HHHHHHHHHhCCcEEEEecCCCC---CCC------------CHHHHHHHHHHHHHh
Confidence 478999999766532 122 2223 468789999999999922 111 244455544444433
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCC--ceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK 710 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 710 (776)
. ..+++++||||||.+++.++.++|+ +++++++.+|........... ..+...+ .....+.+++
T Consensus 63 ~---~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~ 128 (192)
T 1uxo_A 63 L---HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQML-DEFTQGS----------FDHQKIIESA 128 (192)
T ss_dssp C---CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGGG-GGGTCSC----------CCHHHHHHHE
T ss_pred c---cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccccchhh-hhhhhcC----------CCHHHHHhhc
Confidence 2 4689999999999999999999999 999999998875432110000 1111111 1123456677
Q ss_pred CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC--CcHHHHHHHHHHHHHH
Q 004067 711 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIER 774 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~~~fl~~ 774 (776)
+|+|+++|++|..+++..+..+.+.+ +.+++++++++|.+... ....++.+.+.+|+.+
T Consensus 129 ~P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~l~~ 189 (192)
T 1uxo_A 129 KHRAVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 189 (192)
T ss_dssp EEEEEEEETTCSSSCHHHHHHHHHHT-----TCEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred CCEEEEecCCCCcCCHHHHHHHHHhc-----CceEEEeCCCcCcccccccccHHHHHHHHHHHHHH
Confidence 89999999999999999888887765 45899999999987322 2234456666666653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-14 Score=157.00 Aligned_cols=291 Identities=10% Similarity=0.006 Sum_probs=188.3
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
...|+|||++|+..+.. ..|.+||+.+++...+... +...+....|+| |
T Consensus 102 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~-----------------------h~~~v~~~~~~~---~ 150 (420)
T 3vl1_A 102 VDTAKLQMRRFILGTTE-----GDIKVLDSNFNLQREIDQA-----------------------HVSEITKLKFFP---S 150 (420)
T ss_dssp EEEECSSSCEEEEEETT-----SCEEEECTTSCEEEEETTS-----------------------SSSCEEEEEECT---T
T ss_pred EEEEecCCCEEEEEECC-----CCEEEEeCCCcceeeeccc-----------------------ccCccEEEEECC---C
Confidence 44789999999976653 3699999998887665421 124788999999 9
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCC--Cce
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANG--NTV 214 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~--~~~ 214 (776)
|+.|+.. .++.|++||+.+++....+..... .+..+.|+|||+.|+..+. +.|.+|++.+++.......... ..+
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRA-TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC-cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 9988876 678899999998877645554443 4888999999999998775 5699999998876554332111 000
Q ss_pred ec-----CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 215 TH-----GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 215 ~~-----~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
.. +............+..+.|+|||+.|+....+ ..|.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------------------------------g~i~i 273 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS------------------------------------GVITV 273 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT------------------------------------SCEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC------------------------------------CeEEE
Confidence 00 00000000011234567799999988776533 23799
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCce--EEEEEeccCceeecc
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQR--KVILVEELDSWVNLH 366 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~ 366 (776)
||+.+++...... ..+...+..++|+|||+ .++... .+..|++||+.++.. ..+..+.......
T Consensus 274 ~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-- 340 (420)
T 3vl1_A 274 HNVFSKEQTIQLP-------SKFTCSCNSLTVDGNNANYIYAGY----ENGMLAQWDLRSPECPVGEFLINEGTPINN-- 340 (420)
T ss_dssp EETTTCCEEEEEC-------CTTSSCEEEEEECSSCTTEEEEEE----TTSEEEEEETTCTTSCSEEEEESTTSCEEE--
T ss_pred EECCCCceeEEcc-------cccCCCceeEEEeCCCCCEEEEEe----CCCeEEEEEcCCCcCchhhhhccCCCCceE--
Confidence 9998877544322 34567799999999998 776655 445799999988753 4444433221111
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc----------eeeccccCCeEEEEEEeecCCCc---EEEEEEc
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT----------CLGPITEGDWMVEQIVGVNEASG---QVYFTGT 433 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~----------~~~~lt~~~~~~~~~~~~s~dg~---~i~~~~~ 433 (776)
. .+.++.++++...+| .|.+|++... ....+......+..+. |+++++ .++..+.
T Consensus 341 -~--------~~~~~~~l~s~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 341 -V--------YFAAGALFVSSGFDT--SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC-YVSDDESNGEVLEVGK 408 (420)
T ss_dssp -E--------EEETTEEEEEETTTE--EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE-EECCSSSSCEEEEEET
T ss_pred -E--------EeCCCCEEEEecCCc--cEEEEeccCCCCCccceeccCccEEccCCcceEEEE-EccCCCCcceEEEEcC
Confidence 1 112455666776677 7888886552 1222333333445554 899998 7777765
Q ss_pred cCCCceeeEEEE
Q 004067 434 LDGPLESHLYCA 445 (776)
Q Consensus 434 ~~~~~~~~l~~~ 445 (776)
.+ ...+|.+
T Consensus 409 ~g---~~~~~~~ 417 (420)
T 3vl1_A 409 NN---FCALYNL 417 (420)
T ss_dssp TT---EEEEEES
T ss_pred Cc---eEEEEec
Confidence 43 2566654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=164.75 Aligned_cols=283 Identities=11% Similarity=0.017 Sum_probs=174.0
Q ss_pred CCeeeEEEeecCCCceEEEEeC-------CCcEEEEeCCCCccceec----CCCCCCCccCceeCCCCCEEEEEECCcEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL-------PDGIYFQDLSCSKPELKL----SSSSCSPVIDPHLSSDGTMIAFVRDCELH 193 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~-------~~~l~~~d~~~~~~~~~l----~~~~~~~~~~~~~SpDg~~la~~~~~~l~ 193 (776)
..+.+..||| ||++|+... ++.|++|+..++.....+ ..... .+..++|+||++.++-..++.|.
T Consensus 43 ~~V~~v~fSp---DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~s~d~~~l~~s~dg~v~ 118 (357)
T 4g56_B 43 VQIGAVRYRR---DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEA-GVTDVAWVSEKGILVASDSGAVE 118 (357)
T ss_dssp SEEEEEEECS---SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSS-CEEEEEEETTTEEEEEETTSCEE
T ss_pred CCEEEEEECC---CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCC-CEEEEEEcCCCCEEEEECCCEEE
Confidence 4688999999 999999873 567999998877644122 11222 37789999999877666667899
Q ss_pred EEecCCCceeEE---eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 194 VLNLLINEQRQL---THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 194 ~~~l~~g~~~~l---t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
+||+.+++.... ...+. -..+..++|+|||+.|+....+
T Consensus 119 lWd~~~~~~~~~~~~~~~~h----------------~~~V~~v~~spdg~~l~sgs~d---------------------- 160 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEH----------------DDIVKTLSVFSDGTQAVSGGKD---------------------- 160 (357)
T ss_dssp EC--------CCCCEEECCC----------------SSCEEEEEECSSSSEEEEEETT----------------------
T ss_pred EeeccccceeEEEeeccCCC----------------CCCEEEEEECCCCCEEEEEeCC----------------------
Confidence 999988764321 11111 1125578999999999876643
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
..|.+||+.+++....- ..+...+..++|+|+++ .++... .+..|.+||+.++
T Consensus 161 --------------g~v~iwd~~~~~~~~~~--------~~h~~~v~~v~~s~~~~~~~~s~~----~dg~v~~wd~~~~ 214 (357)
T 4g56_B 161 --------------FSVKVWDLSQKAVLKSY--------NAHSSEVNCVAACPGKDTIFLSCG----EDGRILLWDTRKP 214 (357)
T ss_dssp --------------SCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTCSSCEEEEE----TTSCEEECCTTSS
T ss_pred --------------CeEEEEECCCCcEEEEE--------cCCCCCEEEEEEccCCCceeeeec----cCCceEEEECCCC
Confidence 23789999988765431 45667789999999987 444443 3446999999887
Q ss_pred ceEEEEEe-ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcE
Q 004067 350 QRKVILVE-ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQ 427 (776)
Q Consensus 350 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~ 427 (776)
+....... ...... ..-.|+| +++.++.+...++ .|++||+.+++ .+.+..+...+..+. |+|+++.
T Consensus 215 ~~~~~~~~~~~~~~v-~~v~~sp-------~~~~~la~g~~d~--~i~~wd~~~~~~~~~~~~~~~~v~~l~-~sp~~~~ 283 (357)
T 4g56_B 215 KPATRIDFCASDTIP-TSVTWHP-------EKDDTFACGDETG--NVSLVNIKNPDSAQTSAVHSQNITGLA-YSYHSSP 283 (357)
T ss_dssp SCBCBCCCTTCCSCE-EEEEECT-------TSTTEEEEEESSS--CEEEEESSCGGGCEEECCCSSCEEEEE-ECSSSSC
T ss_pred ceeeeeeeccccccc-cchhhhh-------cccceEEEeeccc--ceeEEECCCCcEeEEEeccceeEEEEE-EcCCCCC
Confidence 65432221 111110 0011222 2344666666666 79999987665 344555555566654 9999977
Q ss_pred EEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC-CCeEEEEEcC-CcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 428 VYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDH-NMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 428 i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
+++++..++. +.||.++ .+ ++.+...+ ..+..++||| |++.|+... .+. .|.+|++...
T Consensus 284 ~lasgs~D~~--i~iwd~~---~~-----~~~~~~~H~~~V~~vafsP~d~~~l~s~s-~Dg---~v~iW~~~~~ 344 (357)
T 4g56_B 284 FLASISEDCT--VAVLDAD---FS-----EVFRDLSHRDFVTGVAWSPLDHSKFTTVG-WDH---KVLHHHLPSE 344 (357)
T ss_dssp CEEEEETTSC--EEEECTT---SC-----EEEEECCCSSCEEEEEECSSSTTEEEEEE-TTS---CEEEEECC--
T ss_pred EEEEEeCCCE--EEEEECC---CC-----cEeEECCCCCCEEEEEEeCCCCCEEEEEc-CCC---eEEEEECCCC
Confidence 7777666654 6777554 22 23333333 3577899999 787776543 333 5888887543
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-17 Score=173.19 Aligned_cols=213 Identities=12% Similarity=0.096 Sum_probs=132.8
Q ss_pred CceEEEEEcCCCCcccccc--cccc-------cchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh--hccC-CccHH
Q 004067 553 PYKTLISVYGGPCVQLVCD--SWIN-------TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK--HNCG-RIDAE 620 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~--~~~~-------~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~--~~~~-~~~~~ 620 (776)
+.|+||++||.+++..... .|.. .+..++..|+++||.|+++|+||+|.+......... ..+. ....+
T Consensus 49 ~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~ 128 (354)
T 2rau_A 49 GNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWIS 128 (354)
T ss_dssp CEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHHH
T ss_pred CCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHHH
Confidence 4589999999877653211 2220 011457888999999999999999987532211000 0010 11256
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCcc----cc--------ccc------
Q 004067 621 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWD----GY--------DTF------ 681 (776)
Q Consensus 621 D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~----~~--------~~~------ 681 (776)
|+.++++++.++. +.++++++||||||.+++.++.++ |++++++|+.++..... .. ...
T Consensus 129 d~~~~~~~l~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (354)
T 2rau_A 129 DIKEVVSFIKRDS--GQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGIY 206 (354)
T ss_dssp HHHHHHHHHHHHH--CCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTCC
T ss_pred HHHHHHHHHHHhc--CCceEEEEEECHhHHHHHHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhccc
Confidence 7888888877652 446899999999999999999998 99999999985532110 00 000
Q ss_pred -----------------cccc-------------------c---cCCCCC----Cccch----------------hcCCh
Q 004067 682 -----------------YTEK-------------------Y---MGLPSE----DPVGY----------------EYSSV 702 (776)
Q Consensus 682 -----------------~~~~-------------------~---~~~~~~----~~~~~----------------~~~~~ 702 (776)
+... + ...+.. ....+ ...+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (354)
T 2rau_A 207 VIPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERDL 286 (354)
T ss_dssp EEECSSSTTCTHHHHHHHSTTSCCSSTTSSSHHHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTTC
T ss_pred ccCCCchhhhHHHHHhccccccCccccchhhHHHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCccc
Confidence 0000 0 000000 00000 00112
Q ss_pred hhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC--CCCcHHHHHHHHHHHHHHh
Q 004067 703 MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR--RHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 703 ~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~--~~~~~~~~~~~~~~fl~~~ 775 (776)
...+.++++|+|+++|++|.++|. .+ +.+ ..+.++++++++||... .++..+++.+.+.+||+++
T Consensus 287 ~~~l~~i~~P~Lii~G~~D~~~p~-~~----~~l---~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 287 KFDYEGILVPTIAFVSERFGIQIF-DS----KIL---PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp CCCCTTCCCCEEEEEETTTHHHHB-CG----GGS---CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred ccccccCCCCEEEEecCCCCCCcc-ch----hhh---ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 223458889999999999987653 22 222 35679999999999762 3455689999999999875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-15 Score=155.49 Aligned_cols=263 Identities=10% Similarity=0.051 Sum_probs=164.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|++..... ..|++||+.+++..........+ .....+..+.|+|
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~s~-- 91 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLSTPE------------------ERVKSLFGAALSP-- 91 (337)
T ss_dssp CCCEEECTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCBTT------------------EEEECTTCEEECT--
T ss_pred ccceEEcCCCCEEEEEeCCC----CeEEEEECCCCCeEeeEEcCCcc------------------cccccccceEECC--
Confidence 58899999999988776543 47999999998875433211000 0001355788999
Q ss_pred CCceEEEEe-------------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee
Q 004067 137 SKKKIIMVP-------------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR 203 (776)
Q Consensus 137 ~dg~~l~~~-------------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~ 203 (776)
||++|++. .++.|++||+++++....+... .....+.|||||+.|++. +++|+++++++++..
T Consensus 92 -dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 92 -DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLV 167 (337)
T ss_dssp -TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEE
T ss_pred -CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEe-CCeEEEEECCCCcEe
Confidence 99999988 3689999999988776344332 236778999999988777 788999999999876
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCC-eEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIP-RFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
.....+.. .....|+|||+.|++......... .+...........+ ..
T Consensus 168 ~~~~~~~~------------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 216 (337)
T 1pby_B 168 EDKPIQSW------------------EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP-------------TA 216 (337)
T ss_dssp EEECSTTT------------------TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG-------------GG
T ss_pred eeeecccc------------------CCCceeCCCccEEeeeccCCCceeeeeeccccccccccc-------------cc
Confidence 54332220 012358999998765432211100 01111000000000 01
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCce
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
....|++||+++++...+... ........++|||||+.++.. ...|++||+++++...........+
T Consensus 217 ~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~------~~~v~~~d~~~~~~~~~~~~~~~~~ 283 (337)
T 1pby_B 217 YRTGLLTMDLETGEMAMREVR-------IMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKNASIKRVPLPHSYY 283 (337)
T ss_dssp EEEEEEEEETTTCCEEEEEEE-------ECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTTEEEEEEECSSCCC
T ss_pred cccceEEEeCCCCCceEeecC-------CCCCceeeEEECCCCCEEEEe------CCeEEEEECCCCcCcceecCCCcee
Confidence 224799999999988755442 233456679999999977766 2469999999987654443221111
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
. ..|+| ++..++++..++ .|++|++++++
T Consensus 284 ~---~~~s~--------dg~~l~~~~~~~--~i~v~d~~~~~ 312 (337)
T 1pby_B 284 S---VNVST--------DGSTVWLGGALG--DLAAYDAETLE 312 (337)
T ss_dssp E---EEECT--------TSCEEEEESBSS--EEEEEETTTCC
T ss_pred e---EEECC--------CCCEEEEEcCCC--cEEEEECcCCc
Confidence 1 11222 233455554444 89999987765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-14 Score=150.78 Aligned_cols=276 Identities=13% Similarity=0.062 Sum_probs=183.2
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+-.+.+ ..|.+||..+++........ ...+....|+|
T Consensus 67 V~~~~~s~d~~~l~s~s~D-----g~v~vWd~~~~~~~~~~~~~-----------------------~~~v~~~~~sp-- 116 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQD-----GKVIVWDSFTTNKEHAVTMP-----------------------CTWVMACAYAP-- 116 (354)
T ss_dssp EEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECS-----------------------SSCCCEEEECT--
T ss_pred EEEEEECCCCCEEEEEeCC-----CeEEEEECCCCCcceEEecC-----------------------CCCEEEEEECC--
Confidence 5789999999999865542 46999999887764433211 13577899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccc------eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPE------LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~------~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~ 208 (776)
||+.|+.. .++.+.+|++...... ..+..+. ..+....|+||++.|+..+. +.|.+||+.+++.......
T Consensus 117 -~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~ 194 (354)
T 2pbi_B 117 -SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194 (354)
T ss_dssp -TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS-SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC-CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence 99999987 6778999988654211 1222222 24678899999999888775 5799999999876543332
Q ss_pred CCCCceecCCcccceecccCCcceEEECC--CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSL--DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
... .+..+.|+| +|+.|+..+.+ ..
T Consensus 195 h~~-----------------~v~~~~~~~~~~g~~l~sgs~D------------------------------------g~ 221 (354)
T 2pbi_B 195 HGA-----------------DVLCLDLAPSETGNTFVSGGCD------------------------------------KK 221 (354)
T ss_dssp CSS-----------------CEEEEEECCCSSCCEEEEEETT------------------------------------SC
T ss_pred CCC-----------------CeEEEEEEeCCCCCEEEEEeCC------------------------------------Ce
Confidence 211 133566766 57777766543 24
Q ss_pred EEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecc
Q 004067 287 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 366 (776)
Q Consensus 287 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 366 (776)
|.+||+.+++....- ..+...+..++|+|||+.++..+ .+..|.+||+.++....+............
T Consensus 222 v~~wd~~~~~~~~~~--------~~h~~~v~~v~~~p~~~~l~s~s----~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAF--------ETHESDVNSVRYYPSGDAFASGS----DDATCRLYDLRADREVAIYSKESIIFGASS 289 (354)
T ss_dssp EEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred EEEEECCCCcEEEEe--------cCCCCCeEEEEEeCCCCEEEEEe----CCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence 799999988765431 45667899999999999877665 345699999988765444432211110011
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
-.|+| ++.++++...++ .|.+||+..+ ....+..+...+..+. |+|||+.|+.. +.++ .+.||
T Consensus 290 ~~~s~--------~g~~l~~g~~d~--~i~vwd~~~~~~~~~l~~h~~~v~~l~-~spdg~~l~sg-s~D~--~v~vW 353 (354)
T 2pbi_B 290 VDFSL--------SGRLLFAGYNDY--TINVWDVLKGSRVSILFGHENRVSTLR-VSPDGTAFCSG-SWDH--TLRVW 353 (354)
T ss_dssp EEECT--------TSSEEEEEETTS--CEEEEETTTCSEEEEECCCSSCEEEEE-ECTTSSCEEEE-ETTS--EEEEE
T ss_pred EEEeC--------CCCEEEEEECCC--cEEEEECCCCceEEEEECCCCcEEEEE-ECCCCCEEEEE-cCCC--CEEec
Confidence 12333 344666666677 8999997554 4556666666676665 99999965544 4443 36666
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-15 Score=153.83 Aligned_cols=251 Identities=8% Similarity=0.096 Sum_probs=157.8
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee-EEEeecC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR-YEWVKTS 136 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~sp~~ 136 (776)
.++|||||++|+...... ..|+++|+++++. ...... +..... +.|+|
T Consensus 44 ~~~~s~dg~~l~~~~~~~----~~i~~~d~~~~~~~~~~~~~------------------------~~~~~~~~~~s~-- 93 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFC----QTLVQIETQLEPPKVVAIQE------------------------GQSSMADVDITP-- 93 (331)
T ss_dssp EEEECSSSCEEEEEESTT----CEEEEEECSSSSCEEEEEEE------------------------CSSCCCCEEECT--
T ss_pred eEEEcCCCCEEEEEeCCC----CeEEEEECCCCceeEEeccc------------------------CCCCccceEECC--
Confidence 889999999888776644 4799999999885 333221 123444 88999
Q ss_pred CCceEEEEeCCC----cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--Cc-EEEEecCCCce-e----E
Q 004067 137 SKKKIIMVPLPD----GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CE-LHVLNLLINEQ-R----Q 204 (776)
Q Consensus 137 ~dg~~l~~~~~~----~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~-l~~~~l~~g~~-~----~ 204 (776)
||++|+..... .|++||+.+++....+... . ....+.|||||++|++... +. |++++++.... . +
T Consensus 94 -dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 94 -DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-Y-DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp -TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-T-TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred -CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-C-CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 99999966444 7999999998876333332 2 3578999999998776643 56 88888774322 1 1
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
....+. ....++|+|||+.|++.....
T Consensus 171 ~~~~~~------------------~~~~~~~spdg~~l~v~~~~~----------------------------------- 197 (331)
T 3u4y_A 171 FISGGT------------------RPFNITFTPDGNFAFVANLIG----------------------------------- 197 (331)
T ss_dssp EECSSS------------------SEEEEEECTTSSEEEEEETTT-----------------------------------
T ss_pred cccCCC------------------CccceEECCCCCEEEEEeCCC-----------------------------------
Confidence 111111 134788999999887765221
Q ss_pred EEEEEEEcCCCce----EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 285 VRLGVVSAAGGPV----SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
..|.+||+++++. ..+. .......++|||||+.+++... ....|++||+++++.+.+......
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~----------~~~~~~~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~~~~~~~~~~~ 264 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVG----------TNNLPGTIVVSRDGSTVYVLTE---STVDVFNFNQLSGTLSFVKSFGHG 264 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEE----------CSSCCCCEEECTTSSEEEEECS---SEEEEEEEETTTTEEEEEEEEECC
T ss_pred CeEEEEECCCCcccceeeecc----------CCCCCceEEECCCCCEEEEEEc---CCCEEEEEECCCCceeeecccccc
Confidence 3588999988875 2232 1234456899999997766532 355699999999988665433221
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecccc
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE 410 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~ 410 (776)
........+....-.++.++..+++.+..++ .|.+|++++.....+..
T Consensus 265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~--~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 265 LLIDPRPLFGANQMALNKTETKLFISANISR--ELKVFTISGKVVGYVAG 312 (331)
T ss_dssp CCCCCGGGTTCCCEEECTTSSEEEEEETTTT--EEEEEETTSCEEEECTT
T ss_pred cccCCCCcccccceEECCCCCEEEEecCCCC--cEEEEEecCCcccceec
Confidence 0000111110000011223333555555555 89999998776555543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-15 Score=159.32 Aligned_cols=275 Identities=9% Similarity=0.070 Sum_probs=184.6
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+..++|||||++|+..+.. ..|.+|+..+.....+..+. ..+....|+|
T Consensus 110 ~v~~~~~s~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~------------------------~~v~~~~~~~- 159 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVEN-----GELRLWNKTGALLNVLNFHR------------------------APIVSVKWNK- 159 (425)
T ss_dssp CEEEEEECTTSSEEEEEETT-----SCEEEEETTSCEEEEECCCC------------------------SCEEEEEECT-
T ss_pred ceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCeeeeccCCC------------------------ccEEEEEECC-
Confidence 46889999999999976553 35999996655555555432 3688999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCC---------------ccCceeCCCCCEEEEEECCcEEEEecCC
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSP---------------VIDPHLSSDGTMIAFVRDCELHVLNLLI 199 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~---------------~~~~~~SpDg~~la~~~~~~l~~~~l~~ 199 (776)
||+.|+.. .++.|++||+.+++....+.... .. +..+.|+|++..++...++.|+++++.+
T Consensus 160 --~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~ 236 (425)
T 1r5m_A 160 --DGTHIISMDVENVTILWNVISGTVMQHFELKE-TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE 236 (425)
T ss_dssp --TSSEEEEEETTCCEEEEETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTC
T ss_pred --CCCEEEEEecCCeEEEEECCCCcEEEEeeccc-cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCC
Confidence 99998876 67899999999887663333222 22 6788999998755555567899999998
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
++.......... .+..+.|+||++.|+....+
T Consensus 237 ~~~~~~~~~~~~-----------------~i~~~~~~~~~~~l~~~~~d------------------------------- 268 (425)
T 1r5m_A 237 KTPTGKLIGHHG-----------------PISVLEFNDTNKLLLSASDD------------------------------- 268 (425)
T ss_dssp SSCSEEECCCSS-----------------CEEEEEEETTTTEEEEEETT-------------------------------
T ss_pred CceeeeeccCCC-----------------ceEEEEECCCCCEEEEEcCC-------------------------------
Confidence 866544322211 14578899999988876533
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE- 358 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~- 358 (776)
..|++||+.+++..... ..+...+..+.|+||| .++... .+..|.+||+.+++........
T Consensus 269 -----~~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 269 -----GTLRIWHGGNGNSQNCF--------YGHSQSIVSASWVGDD-KVISCS----MDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp -----SCEEEECSSSBSCSEEE--------CCCSSCEEEEEEETTT-EEEEEE----TTSEEEEEETTTTEEEEEEECTT
T ss_pred -----CEEEEEECCCCccceEe--------cCCCccEEEEEECCCC-EEEEEe----CCCcEEEEECCCCcEeEecccCC
Confidence 23789998877644331 3456678999999999 555554 3457999999988765544432
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce---------------------eeccccCCe--EE
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC---------------------LGPITEGDW--MV 415 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~---------------------~~~lt~~~~--~~ 415 (776)
..... -.|+| ++.++++...+| .|++|++..++ ...+..+.. .+
T Consensus 331 ~~i~~---~~~s~--------~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (425)
T 1r5m_A 331 VPIFA---GRISQ--------DGQKYAVAFMDG--QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397 (425)
T ss_dssp CCEEE---EEECT--------TSSEEEEEETTS--CEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred ccEEE---EEEcC--------CCCEEEEEECCC--eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence 22111 12333 234666666667 78888877654 344554433 56
Q ss_pred EEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 416 EQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 416 ~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
..+. |+++|+.|+..+. ++ .+.+|.++
T Consensus 398 ~~~~-~s~~~~~l~~~~~-dg--~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLS-WNCAGNKISVAYS-LQ--EGSVVAIP 424 (425)
T ss_dssp EEEE-ECTTSSEEEEEES-SS--CCEEEECC
T ss_pred EEEE-ccCCCceEEEEec-Cc--eEEEEeec
Confidence 6654 9999997665544 33 26777653
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=160.31 Aligned_cols=191 Identities=17% Similarity=0.183 Sum_probs=126.6
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
.||++||.+++.. .|..++..|+ .+|.|+++|+||+|.|... ....++++. +.+.+. +
T Consensus 15 ~vvllHG~~~~~~-------~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~~~---~~l~~~--l 72 (258)
T 1m33_A 15 HLVLLHGWGLNAE-------VWRCIDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLADMA---EAVLQQ--A 72 (258)
T ss_dssp EEEEECCTTCCGG-------GGGGTHHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHHHH---HHHHTT--S
T ss_pred eEEEECCCCCChH-------HHHHHHHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHHHH---HHHHHH--h
Confidence 7899999776543 2344567776 4799999999999988643 112344433 344433 2
Q ss_pred CCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc------ccc----cc-----------ccccc-----CC
Q 004067 636 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------YDT----FY-----------TEKYM-----GL 689 (776)
Q Consensus 636 d~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~------~~~----~~-----------~~~~~-----~~ 689 (776)
+ +++.|+||||||.+++.+|.++|++++++|+.++...+.. ... .+ ...+. +.
T Consensus 73 ~-~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 1m33_A 73 P-DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGT 151 (258)
T ss_dssp C-SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTS
T ss_pred C-CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 3 6899999999999999999999999999998776432110 000 00 00000 00
Q ss_pred CC-----------------CCcc-------chhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE
Q 004067 690 PS-----------------EDPV-------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 745 (776)
Q Consensus 690 ~~-----------------~~~~-------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 745 (776)
+. .... .+...+....+.++++|+|+++|++|..+++..+..+.+. -.+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~----~~~~~~ 227 (258)
T 1m33_A 152 ETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKL----WPHSES 227 (258)
T ss_dssp TTHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTT----CTTCEE
T ss_pred ccchhhHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCCHHHHHHHHHh----CccceE
Confidence 00 0000 0011122234567889999999999999998766655443 356789
Q ss_pred EEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 746 LIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 746 ~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++++++||.+ ..+.++++.+.+.+|+.+
T Consensus 228 ~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 228 YIFAKAAHAP-FISHPAEFCHLLVALKQR 255 (258)
T ss_dssp EEETTCCSCH-HHHSHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 9999999986 446688999999999864
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=161.72 Aligned_cols=221 Identities=11% Similarity=0.061 Sum_probs=137.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchh-hhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~-~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
+|.++++..+.+.+ ...|+||++||.+++... .|...|.. ++..|++ +|.|+++|+||+|.+......
T Consensus 19 ~~~~l~y~~~G~~~-----~~~p~vvllHG~~~~~~~--~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~s~~~~~~--- 87 (286)
T 2qmq_A 19 PYGSVTFTVYGTPK-----PKRPAIFTYHDVGLNYKS--CFQPLFRFGDMQEIIQ-NFVRVHVDAPGMEEGAPVFPL--- 87 (286)
T ss_dssp TTEEEEEEEESCCC-----TTCCEEEEECCTTCCHHH--HHHHHHTSHHHHHHHT-TSCEEEEECTTTSTTCCCCCT---
T ss_pred CCeEEEEEeccCCC-----CCCCeEEEeCCCCCCchh--hhhhhhhhchhHHHhc-CCCEEEecCCCCCCCCCCCCC---
Confidence 67889888887543 234899999998766431 02111211 4566766 699999999999866432111
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc------------
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------------ 679 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------------ 679 (776)
.......+++.+.+..+++.. +.+++.|+||||||.+++.++.++|++++++|+.+|......+.
T Consensus 88 -~~~~~~~~~~~~~l~~~l~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
T 2qmq_A 88 -GYQYPSLDQLADMIPCILQYL--NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTS 164 (286)
T ss_dssp -TCCCCCHHHHHHTHHHHHHHH--TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHHHHHHHHHHHTTS
T ss_pred -CCCccCHHHHHHHHHHHHHHh--CCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchhhhhhhhhccccc
Confidence 110113455555554444432 33589999999999999999999999999999998865321110
Q ss_pred --------cccccccc-CCCCC------------Cc---cch-------hcCC-hhhhhccCCCcEEEEecCCCCccChH
Q 004067 680 --------TFYTEKYM-GLPSE------------DP---VGY-------EYSS-VMHHVHKMKGKLLLVHGMIDENVHFR 727 (776)
Q Consensus 680 --------~~~~~~~~-~~~~~------------~~---~~~-------~~~~-~~~~~~~i~~P~lii~G~~D~~v~~~ 727 (776)
..+..... ..+.. .. ..+ .... ....+.++++|+|+++|++|..++ .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-~ 243 (286)
T 2qmq_A 165 SIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED-A 243 (286)
T ss_dssp CHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEEEEETTSTTHH-H
T ss_pred cchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEEEecCCCcccc-H
Confidence 00000000 00000 00 000 0000 013456788999999999999887 2
Q ss_pred HHHHHHHHHHHCCC-CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 728 HTARLINALVAARK-PYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 728 ~~~~~~~~l~~~~~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
. .+.+.+... +.++++++++||.+ ..+.++++.+.+.+||+
T Consensus 244 -~---~~~~~~~~~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 244 -V---VECNSKLDPTQTSFLKMADSGGQP-QLTQPGKLTEAFKYFLQ 285 (286)
T ss_dssp -H---HHHHHHSCGGGEEEEEETTCTTCH-HHHCHHHHHHHHHHHHC
T ss_pred -H---HHHHHHhcCCCceEEEeCCCCCcc-cccChHHHHHHHHHHhc
Confidence 2 333334444 68999999999986 44568889999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-14 Score=147.46 Aligned_cols=280 Identities=10% Similarity=0.044 Sum_probs=184.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
..+....|+| ||+.|+.. .++.|.+||+.+++....+..... .+....|+|||+.|+..+. +.|.+|++.+++.
T Consensus 14 ~~V~~~~fsp---~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 14 DRVKGIDFHP---TEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp SCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CceEEEEECC---CCCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence 4688999999 99999876 788999999999876634544333 4778999999999988875 4799999998876
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
......... .+..++|+||++.|+..+.|
T Consensus 90 ~~~~~~h~~-----------------~v~~~~~~~~~~~l~sgs~D---------------------------------- 118 (304)
T 2ynn_A 90 VVDFEAHPD-----------------YIRSIAVHPTKPYVLSGSDD---------------------------------- 118 (304)
T ss_dssp EEEEECCSS-----------------CEEEEEECSSSSEEEEEETT----------------------------------
T ss_pred EEEEeCCCC-----------------cEEEEEEcCCCCEEEEECCC----------------------------------
Confidence 543322211 14578999999988876643
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCceEEEEE-ec-c
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EE-L 359 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~ 359 (776)
..|.+||+.++....... ..+...+..++|+| |++.++..+ .+..|.+||+.++....... .. .
T Consensus 119 --~~v~lWd~~~~~~~~~~~-------~~h~~~v~~v~~~p~~~~~l~sgs----~D~~v~iwd~~~~~~~~~~~~~~~~ 185 (304)
T 2ynn_A 119 --LTVKLWNWENNWALEQTF-------EGHEHFVMCVAFNPKDPSTFASGC----LDRTVKVWSLGQSTPNFTLTTGQER 185 (304)
T ss_dssp --SCEEEEEGGGTTEEEEEE-------CCCCSCEEEEEECTTCTTEEEEEE----TTSEEEEEETTCSSCSEEEECCCTT
T ss_pred --CeEEEEECCCCcchhhhh-------cccCCcEEEEEECCCCCCEEEEEe----CCCeEEEEECCCCCccceeccCCcC
Confidence 247899998774332222 45677899999999 566776665 45579999997766433222 21 1
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
..... .|.|.+ ++.++++...+| .|.+||+.+++ ...+..+...+.... |+|+++.| +++..++.
T Consensus 186 ~v~~~---~~~~~~------~~~~l~s~s~D~--~i~iWd~~~~~~~~~~~~h~~~v~~~~-~~p~~~~l-~s~s~Dg~- 251 (304)
T 2ynn_A 186 GVNYV---DYYPLP------DKPYMITASDDL--TIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPII-ISGSEDGT- 251 (304)
T ss_dssp CEEEE---EECCST------TCCEEEEEETTS--EEEEEETTTTEEEEEEECCSSCEEEEE-ECSSSSEE-EEEETTSC-
T ss_pred cEEEE---EEEEcC------CCCEEEEEcCCC--eEEEEeCCCCccceeeCCCCCCEEEEE-ECCCCCEE-EEEcCCCe-
Confidence 11110 122211 334666666777 89999988765 455666655666554 99999854 45555543
Q ss_pred eeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 439 ESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 439 ~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+.+|.+. .+. ....+..+. .+..++++|+|+..+++....+ .+.+++.
T Consensus 252 -i~iWd~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~---g~~~~~~ 300 (304)
T 2ynn_A 252 -LKIWNSS---TYK----VEKTLNVGLERSWCIATHPTGRKNYIASGFDN---GFTVLSL 300 (304)
T ss_dssp -EEEEETT---TCC----EEEEECCSSSSEEEEEECTTCGGGCEEEEETT---EEEEEEC
T ss_pred -EEEEECC---CCc----eeeeccCCCccEEEEEECCCCCceEEEEecCC---ceEEEEe
Confidence 7788754 232 445565443 4667899998865333322222 3555554
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=169.14 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=95.9
Q ss_pred ceEEEEEcCC--C--cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc--ccc--cccchhhhHHHHhCCcEEEEEC
Q 004067 524 PDIVQIQAND--G--TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC--DSW--INTVDMRAQYLRSKGILVWKLD 595 (776)
Q Consensus 524 ~~~~~~~~~d--g--~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~--~~~--~~~~~~~~~~l~~~G~~v~~~d 595 (776)
..++.+.+.+ | ..+.++++.|... ...++.|+|+++||+++..... ..| ...+..++..|+++||+|+++|
T Consensus 46 ~~~i~y~t~~~~g~~~~~~g~l~~P~~~-~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~~D 124 (397)
T 3h2g_A 46 VAEFTYATIGVEGEPATASGVLLIPGGE-RCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSD 124 (397)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEECT-TCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEEEC
T ss_pred EEEEEEEecCCCCCeEEEEEEEEeCCCC-CCCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEEec
Confidence 3455555433 4 4689999999774 2336789999999987653310 000 0123445778889999999999
Q ss_pred CCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhh-CC----C-ceEEEEE
Q 004067 596 NRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR-FP----D-VFQCAVS 668 (776)
Q Consensus 596 ~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~-~~----~-~~~~~v~ 668 (776)
+||+|.++...............+.|...++..+.++ ...+.++++|+||||||++++.++.. .+ + .+.+++.
T Consensus 125 ~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~~~ 204 (397)
T 3h2g_A 125 YLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVASAP 204 (397)
T ss_dssp CTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEEEE
T ss_pred CCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEEec
Confidence 9999987532111000000012355666666666554 33346899999999999999888732 22 1 4677777
Q ss_pred cCCCCCc
Q 004067 669 GAPVTSW 675 (776)
Q Consensus 669 ~~~~~~~ 675 (776)
.++..++
T Consensus 205 ~~~~~~l 211 (397)
T 3h2g_A 205 ISGPYAL 211 (397)
T ss_dssp ESCCSSH
T ss_pred ccccccH
Confidence 7776664
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-16 Score=156.10 Aligned_cols=195 Identities=12% Similarity=0.023 Sum_probs=125.7
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|.||++||.+++.. .|..++..|++.||.|+++|+||+|.|.... ...++++.+.+..+++..
T Consensus 16 ~~~vvllHG~~~~~~-------~w~~~~~~L~~~~~~vi~~Dl~GhG~S~~~~---------~~~~~~~a~~l~~~l~~l 79 (264)
T 1r3d_A 16 TPLVVLVHGLLGSGA-------DWQPVLSHLARTQCAALTLDLPGHGTNPERH---------CDNFAEAVEMIEQTVQAH 79 (264)
T ss_dssp BCEEEEECCTTCCGG-------GGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTT
T ss_pred CCcEEEEcCCCCCHH-------HHHHHHHHhcccCceEEEecCCCCCCCCCCC---------ccCHHHHHHHHHHHHHHh
Confidence 488999999876643 3455677887679999999999999886421 012455666665555554
Q ss_pred CCCCCcEEEEeechHHHHHHH---HHhhCCCceEEEEEcCCCCCcccc----------------------ccccccc---
Q 004067 634 LAKVGHIGLYGWSYGGYLSAI---TLARFPDVFQCAVSGAPVTSWDGY----------------------DTFYTEK--- 685 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~---~a~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~~--- 685 (776)
.++..++.|+||||||.+++. +|.++|++++++|+.++....... ......+
T Consensus 80 ~~~~~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (264)
T 1r3d_A 80 VTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQQ 159 (264)
T ss_dssp CCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTTS
T ss_pred CcCCCceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHHHHHhhh
Confidence 333224999999999999999 888899999999988764321100 0000000
Q ss_pred -ccCC-CCC------------Cc----cchh------cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 686 -YMGL-PSE------------DP----VGYE------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 686 -~~~~-~~~------------~~----~~~~------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
.... ... .. ..+. ..+....+.++++|+|+++|++|..++ .+.+.+ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~---~- 230 (264)
T 1r3d_A 160 AVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-----QLAESS---G- 230 (264)
T ss_dssp GGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-----HHHHHH---C-
T ss_pred hhhhccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-----HHHHHh---C-
Confidence 0000 000 00 0000 012233467788999999999997542 233333 2
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.++++++++||.+ ..+.++++.+.+.+|+.++
T Consensus 231 -~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 262 (264)
T 1r3d_A 231 -LSYSQVAQAGHNV-HHEQPQAFAKIVQAMIHSI 262 (264)
T ss_dssp -SEEEEETTCCSCH-HHHCHHHHHHHHHHHHHHH
T ss_pred -CcEEEcCCCCCch-hhcCHHHHHHHHHHHHHHh
Confidence 5789999999987 5567889999999999875
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=156.39 Aligned_cols=235 Identities=13% Similarity=0.063 Sum_probs=147.7
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCC--cccccccccccchhhhHHHHhCCcEEEEECCCCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPC--VQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 599 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~--~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~ 599 (776)
+.+.+++.++ .+..+.+++ |+.. . |+|+++||.++ +. ..|... ....+.+++.||+|+++|.++.
T Consensus 5 ~~~~~~~~s~~~~~~~~v~~--~p~~----~--~~v~llHG~~~~~~~---~~w~~~-~~~~~~l~~~~~~vv~pd~~~~ 72 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQF--QGGG----P--HAVYLLDGLRAQDDY---NGWDIN-TPAFEEYYQSGLSVIMPVGGQS 72 (280)
T ss_dssp CEEEEEEEETTTTEEEEEEE--ECCS----S--SEEEECCCTTCCSSS---CHHHHH-SCHHHHHTTSSSEEEEECCCTT
T ss_pred eEEEEEEECcccCceeEEEE--cCCC----C--CEEEEECCCCCCCCc---cccccc-CcHHHHHhcCCeEEEEECCCCC
Confidence 4566777765 456666664 4332 1 48999999753 22 123211 1123567788999999998764
Q ss_pred CCCchhhhhhhhh--ccCCccHHHH--HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 600 ARRGLKFEASIKH--NCGRIDAEDQ--LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 600 g~~~~~~~~~~~~--~~~~~~~~D~--~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
..+.. +...... ......+.+. .+.+.++.++..++.++++|+||||||++|+.++.++|++|+++++.+|..++
T Consensus 73 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~ 151 (280)
T 1dqz_A 73 SFYTD-WYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNP 151 (280)
T ss_dssp CTTSB-CSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCT
T ss_pred ccccC-CCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccc
Confidence 32211 0000000 0011223332 23344444434456679999999999999999999999999999999998765
Q ss_pred cccc--ccc-----------cccccCCCCCCccchhcCChhhhhccC---CCcEEEEecCCCC--------------ccC
Q 004067 676 DGYD--TFY-----------TEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDE--------------NVH 725 (776)
Q Consensus 676 ~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~--------------~v~ 725 (776)
.... ... ....++.+. ...+...++...+.++ ..|+++.+|+.|. .++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~ 229 (280)
T 1dqz_A 152 SESWWPTLIGLAMNDSGGYNANSMWGPSS--DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLT 229 (280)
T ss_dssp TSTTHHHHHHHHHHHTTSCCHHHHHCSTT--SHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHH
T ss_pred cCcchhhhHHHHhhhccCcCHHHhcCCCC--chhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHH
Confidence 4310 000 011112221 1245555665555544 4799999999997 567
Q ss_pred hHHHHHHHHHHHHCC-CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 726 FRHTARLINALVAAR-KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 726 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
...+.+++++|++.+ .++++.++++++|.+. .....+...+.||.+.
T Consensus 230 ~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~ 277 (280)
T 1dqz_A 230 LRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP---YWNEQLVAMKADIQHV 277 (280)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCceEEEecCCCccChH---HHHHHHHHHHHHHHHH
Confidence 889999999999999 9999999988899752 2344456666776654
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=163.77 Aligned_cols=215 Identities=10% Similarity=-0.001 Sum_probs=143.4
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 531 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 531 ~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
..+|.++.+..+.+ .|+||++||.+++.. .| ..++..|++. |.|+++|+||+|.+......
T Consensus 15 ~~~g~~l~~~~~g~---------~~~vv~lHG~~~~~~---~~----~~~~~~L~~~-~~vi~~D~~G~G~S~~~~~~-- 75 (302)
T 1mj5_A 15 EIKGRRMAYIDEGT---------GDPILFQHGNPTSSY---LW----RNIMPHCAGL-GRLIACDLIGMGDSDKLDPS-- 75 (302)
T ss_dssp EETTEEEEEEEESC---------SSEEEEECCTTCCGG---GG----TTTGGGGTTS-SEEEEECCTTSTTSCCCSSC--
T ss_pred EECCEEEEEEEcCC---------CCEEEEECCCCCchh---hh----HHHHHHhccC-CeEEEEcCCCCCCCCCCCCC--
Confidence 34788888877642 278999999877654 23 3345666655 89999999999988643110
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCC-CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC---cccccc------
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKV-GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYDT------ 680 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~-~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~---~~~~~~------ 680 (776)
........++.+.+..+++.. +. .++.++||||||.+++.++.++|++++++|+.+|... +.....
T Consensus 76 --~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 151 (302)
T 1mj5_A 76 --GPERYAYAEHRDYLDALWEAL--DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLF 151 (302)
T ss_dssp --STTSSCHHHHHHHHHHHHHHT--TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHH
T ss_pred --CcccccHHHHHHHHHHHHHHh--CCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHH
Confidence 111234666666666666553 33 6899999999999999999999999999999887653 110000
Q ss_pred ----------------cccccccC----CCCC----------------Cc----cchhcC--------------Chhhhh
Q 004067 681 ----------------FYTEKYMG----LPSE----------------DP----VGYEYS--------------SVMHHV 706 (776)
Q Consensus 681 ----------------~~~~~~~~----~~~~----------------~~----~~~~~~--------------~~~~~~ 706 (776)
.+...+.. .... .. ..+... +....+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (302)
T 1mj5_A 152 QAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWL 231 (302)
T ss_dssp HHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHH
T ss_pred HHHhccchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhh
Confidence 00000000 0000 00 000000 113345
Q ss_pred ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 707 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 707 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.++++|+|+++|++|..+++.....+.+.+ .+ +++++ ++||.+ ..+.++++.+.+.+|+.+.
T Consensus 232 ~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~-~~e~p~~~~~~i~~fl~~~ 293 (302)
T 1mj5_A 232 SESPIPKLFINAEPGALTTGRMRDFCRTWP----NQ-TEITV-AGAHFI-QEDSPDEIGAAIAAFVRRL 293 (302)
T ss_dssp TTCCSCEEEEEEEECSSSSHHHHHHHTTCS----SE-EEEEE-EESSCG-GGTCHHHHHHHHHHHHHHH
T ss_pred hccCCCeEEEEeCCCCCCChHHHHHHHHhc----CC-ceEEe-cCcCcc-cccCHHHHHHHHHHHHHhh
Confidence 678899999999999999988777665544 34 88889 999986 5667899999999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-15 Score=184.92 Aligned_cols=340 Identities=11% Similarity=0.064 Sum_probs=220.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|||||+.|+.... ..+++|++.++......... +...+....|+|
T Consensus 801 v~~~~~s~dg~~l~~~~~------~~v~~~d~~~~~~~~~~~~~----------------------~~~~v~~~~~sp-- 850 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAK------NKVLLFDIHTSGLLAEIHTG----------------------HHSTIQYCDFSP-- 850 (1249)
T ss_dssp BCCCCBCTTSSEEEEEET------TEEEEEETTTCCEEEEEECS----------------------SSSCCCEEEECS--
T ss_pred EEEEEECCCCCEEEEEcC------CcEEEEEecCCCceeEEcCC----------------------CCCceEEEEEcC--
Confidence 467899999999997653 36999999988764443211 124678899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee-----------
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR----------- 203 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~----------- 203 (776)
+|+.++.. .++.|.+||+.++.....+.... ..+..+.|||||+.|+..+. +.|.+|++.++...
T Consensus 851 -~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 851 -YDHLAVIALSQYCVELWNIDSRLKVADCRGHL-SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp -STTEEEEECSSSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEEcCCCceeeecCCCc-cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 99999987 67889999999988764444443 34888999999999998875 46888887642110
Q ss_pred --------EEeeCCCCC-ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 204 --------QLTHGANGN-TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 204 --------~lt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
.+....... ....+...-........+..++|||||+.++....+
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~-------------------------- 982 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED-------------------------- 982 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT--------------------------
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC--------------------------
Confidence 000000000 000000000000011224578899999988876643
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|++|++.+++.... ...+...+..++|||||+.++..+ .+..|.+||+.+++...+
T Consensus 983 ----------g~i~i~d~~~~~~~~~--------~~~h~~~v~~l~~s~dg~~l~s~~----~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 983 ----------GAIKIIELPNNRVFSS--------GVGHKKAVRHIQFTADGKTLISSS----EDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp ----------SCCEEEETTTTSCEEE--------CCCCSSCCCCEEECSSSSCEEEEC----SSSBEEEEETTTTEEECC
T ss_pred ----------CCEEEEEcCCCceeee--------cccCCCceEEEEECCCCCEEEEEc----CCCEEEEEECCCCceEEE
Confidence 2368899988875543 145666788899999999877665 345699999999876654
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
..+...... +.+.+++.+++...+| .|++|++.+++ ...+..+...+.... |++||+.++..+
T Consensus 1041 ~~~~~~v~~------------~~~~~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~-~s~d~~~l~s~s- 1104 (1249)
T 3sfz_A 1041 QAHQETVKD------------FRLLQDSRLLSWSFDG--TVKVWNVITGRIERDFTCHQGTVLSCA-ISSDATKFSSTS- 1104 (1249)
T ss_dssp BCCSSCEEE------------EEECSSSEEEEEESSS--EEEEEETTTTCCCEEEECCSSCCCCEE-ECSSSSSCEEEC-
T ss_pred ecCCCcEEE------------EEEcCCCcEEEEECCC--cEEEEECCCCceeEEEcccCCcEEEEE-ECCCCCEEEEEc-
Confidence 433322111 1222344455555666 89999987665 345555555555554 999999765544
Q ss_pred cCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEe
Q 004067 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (776)
.++. +.+|.+.. +. ....+..+.+ +..+.|||||+.|+..... ..|++|+..+++....
T Consensus 1105 ~d~~--v~iwd~~~---~~----~~~~l~~h~~~v~~~~~s~dg~~lat~~~d----g~i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A 1105 ADKT--AKIWSFDL---LS----PLHELKGHNGCVRCSAFSLDGILLATGDDN----GEIRIWNVSDGQLLHS 1164 (1249)
T ss_dssp CSSC--CCEECSSS---SS----CSBCCCCCSSCEEEEEECSSSSEEEEEETT----SCCCEEESSSSCCCCC
T ss_pred CCCc--EEEEECCC---cc----eeeeeccCCCcEEEEEECCCCCEEEEEeCC----CEEEEEECCCCceEEE
Confidence 3433 77887653 32 4455555443 6788999999988877543 3488899988875443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-14 Score=153.24 Aligned_cols=284 Identities=13% Similarity=0.054 Sum_probs=189.7
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
..+....|+| |++.|+.. .++.|.+||+.+++....+..+.. .+..+.|+|||+.|+..+. +.|.+|++.+++.
T Consensus 109 ~~V~~~~~~p---~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 109 SPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184 (410)
T ss_dssp SCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-CEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred CcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 4688999999 99988876 788999999999887745554443 4888999999998888775 5799999988765
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
........ ..+..+.|+|||+.|+..+.+
T Consensus 185 ~~~~~~h~-----------------~~V~~v~~~p~~~~l~s~s~D---------------------------------- 213 (410)
T 1vyh_C 185 IRTMHGHD-----------------HNVSSVSIMPNGDHIVSASRD---------------------------------- 213 (410)
T ss_dssp EECCCCCS-----------------SCEEEEEECSSSSEEEEEETT----------------------------------
T ss_pred eEEEcCCC-----------------CCEEEEEEeCCCCEEEEEeCC----------------------------------
Confidence 43222111 114578899999998876643
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCc
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDS 361 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~ 361 (776)
..|.+||+.+++....- ..+...+..+.|+|||+.++..+ .+..|.+||+.+++...... +....
T Consensus 214 --~~i~~wd~~~~~~~~~~--------~~h~~~v~~~~~~~~g~~l~s~s----~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 214 --KTIKMWEVQTGYCVKTF--------TGHREWVRMVRPNQDGTLIASCS----NDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp --SEEEEEETTTCCEEEEE--------ECCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred --CeEEEEECCCCcEEEEE--------eCCCccEEEEEECCCCCEEEEEc----CCCeEEEEECCCCceeeEecCCCceE
Confidence 35899999988754321 34566788999999999877765 34569999999887654332 22211
Q ss_pred eeecccccccCCCC------------ccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEE
Q 004067 362 WVNLHDCFTPLDKG------------VTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQV 428 (776)
Q Consensus 362 ~~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i 428 (776)
.. -.|.|.... ....++.++++...+| .|.+||+.++. ...+..+...+..+. |+++|++|
T Consensus 280 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~--~i~iwd~~~~~~~~~~~~h~~~v~~v~-~~~~g~~l 353 (410)
T 1vyh_C 280 EC---ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK--TIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFI 353 (410)
T ss_dssp EE---EEECCSCGGGGGGGCCSCC-------CCEEEEEETTS--EEEEEETTTTEEEEEEECCSSCEEEEE-ECSSSSCE
T ss_pred EE---EEEcCcccccchhhhccccccccCCCCCEEEEEeCCC--eEEEEECCCCceEEEEECCCCcEEEEE-EcCCCCEE
Confidence 10 012221100 0001244666766777 89999987665 455666666666664 99999976
Q ss_pred EEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 429 YFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+. +..++ .+.+|.+. .+. .+..+..+. .+..+.|+|+++.|+..... ..|.+|+.
T Consensus 354 ~s-~s~D~--~i~vwd~~---~~~----~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D----~~i~vW~~ 409 (410)
T 1vyh_C 354 LS-CADDK--TLRVWDYK---NKR----CMKTLNAHEHFVTSLDFHKTAPYVVTGSVD----QTVKVWEC 409 (410)
T ss_dssp EE-EETTT--EEEEECCT---TSC----CCEEEECCSSCEEEEEECSSSSCEEEEETT----SEEEEEC-
T ss_pred EE-EeCCC--eEEEEECC---CCc----eEEEEcCCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEeC
Confidence 54 44443 37777664 232 456666554 46788999999988755432 24666653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-13 Score=171.10 Aligned_cols=341 Identities=14% Similarity=0.060 Sum_probs=216.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEee-cCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVF-SPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++|||||++|+..+.+ ..|.+||+.+++..... .+ ...+....|+|
T Consensus 618 v~~~~~s~~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~h------------------------~~~v~~~~~s~- 667 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGAD-----KTLQVFKAETGEKLLDIKAH------------------------EDEVLCCAFSS- 667 (1249)
T ss_dssp EEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECCC------------------------SSCEEEEEECT-
T ss_pred EEEEEECCCCCEEEEEeCC-----CeEEEEECCCCCEEEEeccC------------------------CCCEEEEEEec-
Confidence 5788999999999866542 46999999988764433 22 24788999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCC--EEEEEEC-CcEEEEecCCCceeEEeeCCCC
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT--MIAFVRD-CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~--~la~~~~-~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
||++|+.. .++.|.+||+.+++....+.... ..+....|+|+++ .++..+. +.|.+|++.+++..........
T Consensus 668 --~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 668 --DDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp --TSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS
T ss_pred --CCCEEEEEeCCCeEEEEECCCCceEEEEcCCC-CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC
Confidence 99999876 67889999999988774454443 3488899999655 4444443 5799999999876543332211
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
.+..+.|+|||+.|+..+.+ ..|.+||
T Consensus 745 -----------------~v~~~~~sp~~~~l~s~s~d------------------------------------g~v~vwd 771 (1249)
T 3sfz_A 745 -----------------SVNHCRFSPDDELLASCSAD------------------------------------GTLRLWD 771 (1249)
T ss_dssp -----------------CEEEEEECSSTTEEEEEESS------------------------------------SEEEEEE
T ss_pred -----------------CEEEEEEecCCCEEEEEECC------------------------------------CeEEEEe
Confidence 14578899999988877643 3578999
Q ss_pred cCCCceEE-EEcccCCC----CCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecc
Q 004067 292 AAGGPVSW-MDLQCGGT----DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 366 (776)
Q Consensus 292 ~~~~~~~~-l~~~~~~~----~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 366 (776)
+.+++... +....... ........+..++|+|||+.++... ...+++||+.++.............+ ..
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~v-~~ 845 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVLLFDIHTSGLLAEIHTGHHSTI-QY 845 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEEEEETTTCCEEEEEECSSSSCC-CE
T ss_pred CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEEEEEecCCCceeEEcCCCCCce-EE
Confidence 98776433 22211000 0011223566789999999877765 23589999998876554432211110 01
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
-.|+| ++.+++++..+| .|.+|+.+++.. ..+..+...+..+. |+++|+.++..+. ++. +.+|.+
T Consensus 846 ~~~sp--------~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~-~spdg~~l~s~s~-dg~--v~vw~~ 911 (1249)
T 3sfz_A 846 CDFSP--------YDHLAVIALSQY--CVELWNIDSRLKVADCRGHLSWVHGVM-FSPDGSSFLTASD-DQT--IRVWET 911 (1249)
T ss_dssp EEECS--------STTEEEEECSSS--CEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEET-TSC--EEEEEH
T ss_pred EEEcC--------CCCEEEEEeCCC--eEEEEEcCCCceeeecCCCccceEEEE-ECCCCCEEEEEeC-CCe--EEEEEc
Confidence 12333 334666666666 789999887654 44555555566665 9999997665554 332 677764
Q ss_pred EeCC-------------------------CCCCcc------ccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEE
Q 004067 446 KLYP-------------------------DWNHTL------EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILL 494 (776)
Q Consensus 446 ~~~~-------------------------~g~~~~------~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~ 494 (776)
.... +..... ...........+..+.++|+|+.++..... +.|.+
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~----g~i~i 987 (1249)
T 3sfz_A 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED----GAIKI 987 (1249)
T ss_dssp HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT----SCCEE
T ss_pred cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC----CCEEE
Confidence 3100 000000 000011112245677999999988887654 45888
Q ss_pred EEcCCCceeEeec
Q 004067 495 CSLQDGSLVLPLY 507 (776)
Q Consensus 495 ~~~~~~~~~~~l~ 507 (776)
++..++.....+.
T Consensus 988 ~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 988 IELPNNRVFSSGV 1000 (1249)
T ss_dssp EETTTTSCEEECC
T ss_pred EEcCCCceeeecc
Confidence 9998887655443
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-16 Score=159.62 Aligned_cols=212 Identities=13% Similarity=0.046 Sum_probs=135.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|..+++....+ ++.|+||++||.+++.. .|..++..|++. |.|+++|+||+|.|....
T Consensus 29 ~g~~l~y~~~G~-------g~~~~vvllHG~~~~~~-------~w~~~~~~L~~~-~~via~Dl~GhG~S~~~~------ 87 (318)
T 2psd_A 29 LDSFINYYDSEK-------HAENAVIFLHGNATSSY-------LWRHVVPHIEPV-ARCIIPDLIGMGKSGKSG------ 87 (318)
T ss_dssp TTEEEEEEECCS-------CTTSEEEEECCTTCCGG-------GGTTTGGGTTTT-SEEEEECCTTSTTCCCCT------
T ss_pred CCeEEEEEEcCC-------CCCCeEEEECCCCCcHH-------HHHHHHHHhhhc-CeEEEEeCCCCCCCCCCC------
Confidence 777787775432 23368999999876543 233445666654 799999999999886431
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC----Ccccccc--------
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT----SWDGYDT-------- 680 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~----~~~~~~~-------- 680 (776)
...+.++++.+.+..+++.-.+ .+++.|+||||||.+++.+|.++|++++++|+.++.. .+..+..
T Consensus 88 -~~~~~~~~~a~dl~~ll~~l~~-~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 165 (318)
T 2psd_A 88 -NGSYRLLDHYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDIALI 165 (318)
T ss_dssp -TSCCSHHHHHHHHHHHHTTSCC-CSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTTSCSCHHHHHHH
T ss_pred -CCccCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhhhhhHHHHHHHH
Confidence 1123467777777777665432 1689999999999999999999999999999864321 1110000
Q ss_pred -------------ccccccc----CCCCC------------Cc----c-c--h-hcC-----C----------hhhhhcc
Q 004067 681 -------------FYTEKYM----GLPSE------------DP----V-G--Y-EYS-----S----------VMHHVHK 708 (776)
Q Consensus 681 -------------~~~~~~~----~~~~~------------~~----~-~--~-~~~-----~----------~~~~~~~ 708 (776)
.+...+. ..... .. . . + ... . ....+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (318)
T 2psd_A 166 KSEEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRA 245 (318)
T ss_dssp HSTHHHHHHTTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHHHHHHHHHHHHT
T ss_pred hcccchhhhhcchHHHHhhccccccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHHHHHHHHHHhcc
Confidence 0000000 00000 00 0 0 0 000 0 0123456
Q ss_pred C-CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 709 M-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 709 i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+ ++|+|+++|++| .+++ .+..+.+.+ .+.+++++ ++||.+ ..+.++++.+.+.+||.+.
T Consensus 246 i~~~P~Lvi~G~~D-~~~~-~~~~~~~~~----~~~~~~~i-~~gH~~-~~e~p~~~~~~i~~fl~~~ 305 (318)
T 2psd_A 246 SDDLPKLFIESDPG-FFSN-AIVEGAKKF----PNTEFVKV-KGLHFL-QEDAPDEMGKYIKSFVERV 305 (318)
T ss_dssp CTTSCEEEEEEEEC-SSHH-HHHHHHTTS----SSEEEEEE-EESSSG-GGTCHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeccc-cCcH-HHHHHHHhC----CCcEEEEe-cCCCCC-HhhCHHHHHHHHHHHHHHh
Confidence 7 899999999999 8776 555554433 45778888 679976 6678999999999999764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-15 Score=157.40 Aligned_cols=201 Identities=8% Similarity=0.009 Sum_probs=144.8
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..++|||||++|+..+... ...|.+||+.+++......+. ..+.++.|||
T Consensus 137 ~~v~fSpDg~~la~as~~~---d~~i~iwd~~~~~~~~~~~~~------------------------~~V~~v~fsp--- 186 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKV---PAIMRIIDPSDLTEKFEIETR------------------------GEVKDLHFST--- 186 (365)
T ss_dssp EEEEECTTSSCEEEEESCS---SCEEEEEETTTTEEEEEEECS------------------------SCCCEEEECT---
T ss_pred EEEEEcCCCCEEEEEECCC---CCEEEEeECCCCcEEEEeCCC------------------------CceEEEEEcc---
Confidence 4689999999998776432 357999999999876555432 3588999999
Q ss_pred CceEEEEeCCCcEEEEeCCCCccceecC-CCCCCCccCceeCCCCCEEEEEECC-----cEEEEecCCCceeEEeeCCCC
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPELKLS-SSSCSPVIDPHLSSDGTMIAFVRDC-----ELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~SpDg~~la~~~~~-----~l~~~~l~~g~~~~lt~~~~~ 211 (776)
||++|+...++.+.+|+..+++.....+ ......+..++|||||+.++..+.. .++.+++..+....+....
T Consensus 187 dg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~-- 264 (365)
T 4h5i_A 187 DGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ-- 264 (365)
T ss_dssp TSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE--
T ss_pred CCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee--
Confidence 9999999988889999888776542222 2222346778999999999988753 3777887766543221100
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
..+. ...+..++|||||+.|+..+.| ..|.+||
T Consensus 265 ---~~~~--------~~~V~~~~~Spdg~~lasgs~D------------------------------------~~V~iwd 297 (365)
T 4h5i_A 265 ---VTNR--------FKGITSMDVDMKGELAVLASND------------------------------------NSIALVK 297 (365)
T ss_dssp ---EESS--------CSCEEEEEECTTSCEEEEEETT------------------------------------SCEEEEE
T ss_pred ---ecCC--------CCCeEeEEECCCCCceEEEcCC------------------------------------CEEEEEE
Confidence 0000 0114578999999999987754 2479999
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
+.+++....-. ..+...+..++|||||++|+..+ .+..|.+||+..
T Consensus 298 ~~~~~~~~~~~-------~gH~~~V~~v~fSpdg~~laS~S----~D~tvrvw~ip~ 343 (365)
T 4h5i_A 298 LKDLSMSKIFK-------QAHSFAITEVTISPDSTYVASVS----AANTIHIIKLPL 343 (365)
T ss_dssp TTTTEEEEEET-------TSSSSCEEEEEECTTSCEEEEEE----TTSEEEEEECCT
T ss_pred CCCCcEEEEec-------CcccCCEEEEEECCCCCEEEEEe----CCCeEEEEEcCC
Confidence 99988654322 46778899999999999888776 566789999854
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-14 Score=150.32 Aligned_cols=204 Identities=12% Similarity=0.059 Sum_probs=142.7
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc---eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK---QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
.+..++|||||++|+.... ...|++|++++++ ...+..+ ...+....|
T Consensus 10 ~i~~~~~s~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~h------------------------~~~v~~~~~ 60 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPN-----NHEVHIYEKSGNKWVQVHELKEH------------------------NGQVTGVDW 60 (372)
T ss_dssp CCCEEEECTTSSEEEEECS-----SSEEEEEEEETTEEEEEEEEECC------------------------SSCEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeC-----CCEEEEEeCCCCcEEeeeeecCC------------------------CCcccEEEE
Confidence 3589999999999987644 2469999999985 3334332 246889999
Q ss_pred eecCCCceEEEEe-CCCcEEEEeCCCCccce--ecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEE---
Q 004067 133 VKTSSKKKIIMVP-LPDGIYFQDLSCSKPEL--KLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQL--- 205 (776)
Q Consensus 133 sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~l--- 205 (776)
+| ||+.|+.. .++.|.+||+.+++... .+.... ..+..+.|+|||+.|+.... +.|.+|++.++....+
T Consensus 61 ~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 61 AP---DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp ET---TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS-SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred eC---CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC-CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence 99 99999876 67899999998887441 222232 34788999999999998875 5799999988763211
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
...+.. ..+..+.|+||++.|+....+ .
T Consensus 137 ~~~~~~----------------~~i~~~~~~~~~~~l~~~~~d------------------------------------g 164 (372)
T 1k8k_C 137 IKKPIR----------------STVLSLDWHPNSVLLAAGSCD------------------------------------F 164 (372)
T ss_dssp ECTTCC----------------SCEEEEEECTTSSEEEEEETT------------------------------------S
T ss_pred eecccC----------------CCeeEEEEcCCCCEEEEEcCC------------------------------------C
Confidence 111110 114578999999988876633 2
Q ss_pred EEEEEEcC------------------CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC
Q 004067 286 RLGVVSAA------------------GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 286 ~l~~~d~~------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
.|++||+. .++.... ...+...+..+.|+|||+.++... .+..|.+||+.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~i~d~~ 232 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE--------SSSSCGWVHGVCFSANGSRVAWVS----HDSTVCLADAD 232 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE--------CCCCSSCEEEEEECSSSSEEEEEE----TTTEEEEEEGG
T ss_pred CEEEEEcccccccccccccccccccchhhheEe--------cCCCCCeEEEEEECCCCCEEEEEe----CCCEEEEEECC
Confidence 35677743 2332221 134566789999999999777765 34569999998
Q ss_pred CCceEEEEE
Q 004067 348 TGQRKVILV 356 (776)
Q Consensus 348 ~g~~~~l~~ 356 (776)
+++......
T Consensus 233 ~~~~~~~~~ 241 (372)
T 1k8k_C 233 KKMAVATLA 241 (372)
T ss_dssp GTTEEEEEE
T ss_pred CCceeEEEc
Confidence 887654443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-15 Score=170.64 Aligned_cols=247 Identities=9% Similarity=0.063 Sum_probs=170.0
Q ss_pred CeeeEEEeecCCCceEEEEeCC------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC---------
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLP------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC--------- 190 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~--------- 190 (776)
.+..+.||| ||++|+|..+ .+|+++|+++++.. ..+.. ......+.|||| +.|+|++..
T Consensus 164 ~~~~~~~SP---DG~~la~~~~~~G~e~~~i~v~dl~tg~~~-~~~~~-~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 164 ALDAWAASD---DGRLLAYSVQDGGSDWRTVKFVGVADGKPL-ADELK-WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp EEEEEEECT---TSSEEEEEEEETTCSEEEEEEEETTTCCEE-EEEEE-EEESCCCEESTT-SEEEEEECCCC-------
T ss_pred EEEeEEECC---CCCEEEEEEcCCCCceEEEEEEECCCCCCC-CccCC-CceeccEEEECC-CEEEEEEecCcccccccc
Confidence 356789999 9999999833 36999999999886 43221 112357999999 999999742
Q ss_pred ------cEEEEecCCCce--eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCC
Q 004067 191 ------ELHVLNLLINEQ--RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGK 262 (776)
Q Consensus 191 ------~l~~~~l~~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 262 (776)
+||++++.+++. +.+...... +.| ...+.|||||++|++.+.+...
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~-------~~~--------~~~~~~SpDG~~l~~~~~~~~~----------- 291 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPEL-------PKR--------GHGASVSSDGRWVVITSSEGTD----------- 291 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTC-------TTC--------EEEEEECTTSCEEEEEEECTTC-----------
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCC-------CeE--------EEEEEECCCCCEEEEEEEccCC-----------
Confidence 499999988764 333332211 001 2367899999999998754211
Q ss_pred CCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC--c-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceE
Q 004067 263 SSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG--P-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKL 339 (776)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 339 (776)
...+|+++|++++ + .+.+... ......+ ++|||+.|++.++++....
T Consensus 292 --------------------~~~~l~~~d~~~~~~~~~~~l~~~---------~~~~~~~-~~~dg~~l~~~s~~~~~~~ 341 (741)
T 1yr2_A 292 --------------------PVNTVHVARVTNGKIGPVTALIPD---------LKAQWDF-VDGVGDQLWFVSGDGAPLK 341 (741)
T ss_dssp --------------------SCCEEEEEEEETTEECCCEEEECS---------SSSCEEE-EEEETTEEEEEECTTCTTC
T ss_pred --------------------CcceEEEEECCCCCCcccEEecCC---------CCceEEE-EeccCCEEEEEECCCCCCC
Confidence 1257899999988 5 6666432 1222333 4599999999888776678
Q ss_pred EEEEEECCCC--ceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccC-CeEEE
Q 004067 340 KVLKFDIKTG--QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-DWMVE 416 (776)
Q Consensus 340 ~l~~~d~~~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~-~~~~~ 416 (776)
.|+++|++++ ..+.++.+.... .. .+++.++.+++....+|..+|++++++|+..+.|+.. ...+.
T Consensus 342 ~l~~~d~~~~~~~~~~l~~~~~~~-l~----------~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~ 410 (741)
T 1yr2_A 342 KIVRVDLSGSTPRFDTVVPESKDN-LE----------SVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSAS 410 (741)
T ss_dssp EEEEEECSSSSCEEEEEECCCSSE-EE----------EEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEE
T ss_pred EEEEEeCCCCccccEEEecCCCCe-EE----------EEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEE
Confidence 8999999884 566666543221 10 1134466788888889999999999988878888754 33444
Q ss_pred EEEeecCCCcEEEEEEcc-CCCceeeEEEEEeC
Q 004067 417 QIVGVNEASGQVYFTGTL-DGPLESHLYCAKLY 448 (776)
Q Consensus 417 ~~~~~s~dg~~i~~~~~~-~~~~~~~l~~~~~~ 448 (776)
.+ .+++|++.|+|..+. ..| ..+|.+++.
T Consensus 411 ~~-~~s~d~~~l~~~~ss~~~P--~~i~~~d~~ 440 (741)
T 1yr2_A 411 GL-SGRPGDRHAYLSFSSFTQP--ATVLALDPA 440 (741)
T ss_dssp EE-ECCBTCSCEEEEEEETTEE--EEEEEEETT
T ss_pred Ee-ecCCCCCEEEEEEcCCCCC--CEEEEEECC
Confidence 44 488999888887654 334 578888873
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=161.47 Aligned_cols=197 Identities=16% Similarity=0.102 Sum_probs=132.9
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhC--CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
..|+||++||.+++.. .|..+++.|+++ ||.|+++|+||+|.+..... ..++++.+.+..+.
T Consensus 35 ~~~~vvllHG~~~~~~-------~~~~~~~~L~~~~~g~~vi~~D~~G~G~s~~~~~---------~~~~~~~~~l~~~~ 98 (302)
T 1pja_A 35 SYKPVIVVHGLFDSSY-------SFRHLLEYINETHPGTVVTVLDLFDGRESLRPLW---------EQVQGFREAVVPIM 98 (302)
T ss_dssp CCCCEEEECCTTCCGG-------GGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCHH---------HHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCChh-------HHHHHHHHHHhcCCCcEEEEeccCCCccchhhHH---------HHHHHHHHHHHHHh
Confidence 4578999999776643 345567888888 99999999999987654321 13566777777666
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCC-ceEEEEEcCCCCCccccc-cc-------------------------cc
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDGYD-TF-------------------------YT 683 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~~v~~~~~~~~~~~~-~~-------------------------~~ 683 (776)
+.. .+++.++||||||.+++.++.++|+ +++++|+.++........ .. ..
T Consensus 99 ~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (302)
T 1pja_A 99 AKA---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSI 175 (302)
T ss_dssp HHC---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGGGSTG
T ss_pred hcC---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHHHhhh
Confidence 553 3689999999999999999999999 799999887654321100 00 00
Q ss_pred ccccCCCCCCccch----------hcC----C---hhhhhccCCCcEEEEecCCCCccChHHHHHHHHH-----------
Q 004067 684 EKYMGLPSEDPVGY----------EYS----S---VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINA----------- 735 (776)
Q Consensus 684 ~~~~~~~~~~~~~~----------~~~----~---~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~----------- 735 (776)
..+...+.. ...+ ... . ....+.+++ |+|+++|++|.++++..+..+.+.
T Consensus 176 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~~ 253 (302)
T 1pja_A 176 CNYWHDPHH-DDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEE 253 (302)
T ss_dssp GGGBCCTTC-HHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSSSGGGGGTCEECTTCCEECGGG
T ss_pred hhcccChhh-hhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccchhHhhHhhhcCCcccccchhh
Confidence 000011110 0000 000 0 134567788 999999999999998877665321
Q ss_pred -------------HHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 736 -------------LVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 736 -------------l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
+... .++++++++++||.. ..+..+.+.+.+.+||
T Consensus 254 ~~~~~~~~~~~~~l~~~-~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl 301 (302)
T 1pja_A 254 QLVYLRDSFGLKTLLAR-GAIVRCPMAGISHTA-WHSNRTLYETCIEPWL 301 (302)
T ss_dssp SHHHHTTTTSHHHHHHT-TCEEEEECSSCCTTT-TTSCHHHHHHHTGGGC
T ss_pred hhhhhhhhhchhhHhhc-CCeEEEEecCccccc-cccCHHHHHHHHHHhc
Confidence 1111 248999999999986 5567888888887775
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=142.84 Aligned_cols=168 Identities=11% Similarity=0.029 Sum_probs=120.9
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCc---EEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI---LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~---~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
.|+||++||..++.. .|..++..|++.|| .|+++|+||+|.+... ..+++.+.+..+.
T Consensus 3 ~~~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~~------------~~~~~~~~~~~~~ 63 (181)
T 1isp_A 3 HNPVVMVHGIGGASF-------NFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYN------------NGPVLSRFVQKVL 63 (181)
T ss_dssp CCCEEEECCTTCCGG-------GGHHHHHHHHHTTCCGGGEEECCCSCTTCCHHH------------HHHHHHHHHHHHH
T ss_pred CCeEEEECCcCCCHh-------HHHHHHHHHHHcCCCCccEEEEecCCCCCchhh------------hHHHHHHHHHHHH
Confidence 378999999776543 34456788999998 6999999999877431 1344555555554
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhcc
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHK 708 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (776)
++. +.+++.++||||||.+++.++.++ |++++++|+.+|...+.... . .+. .. ..
T Consensus 64 ~~~--~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~-----~---~~~--------~~-----~~ 120 (181)
T 1isp_A 64 DET--GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK-----A---LPG--------TD-----PN 120 (181)
T ss_dssp HHH--CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB-----C---CCC--------SC-----TT
T ss_pred HHc--CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCcccccccc-----c---CCC--------CC-----Cc
Confidence 432 446899999999999999999987 88999999998875432110 0 000 00 11
Q ss_pred CCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 709 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 709 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.+.|+|+++|++|.++|+..+ .....+++++++++|.+.. +. .++.+.+.+||.+
T Consensus 121 ~~~p~l~i~G~~D~~v~~~~~---------~~~~~~~~~~~~~gH~~~~-~~-~~~~~~i~~fl~~ 175 (181)
T 1isp_A 121 QKILYTSIYSSADMIVMNYLS---------RLDGARNVQIHGVGHIGLL-YS-SQVNSLIKEGLNG 175 (181)
T ss_dssp CCCEEEEEEETTCSSSCHHHH---------CCBTSEEEEESSCCTGGGG-GC-HHHHHHHHHHHTT
T ss_pred cCCcEEEEecCCCcccccccc---------cCCCCcceeeccCchHhhc-cC-HHHHHHHHHHHhc
Confidence 246999999999999998743 1356789999999998743 33 3789999999975
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=158.34 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=131.3
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEEC----CCCCCCCchhhhhhh
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLD----NRGTARRGLKFEASI 610 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d----~rg~g~~~~~~~~~~ 610 (776)
..+.+..+.|.. ...|+||++||.+++.. .| ..|..++..| +.||.|+++| +||+|.+....
T Consensus 24 ~~~~y~~~g~~~-----~~~~~vvllHG~~~~~~---~~-~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~~~~---- 89 (335)
T 2q0x_A 24 PYCKIPVFMMNM-----DARRCVLWVGGQTESLL---SF-DYFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQDHAH---- 89 (335)
T ss_dssp TTEEEEEEEECT-----TSSSEEEEECCTTCCTT---CS-TTHHHHHHHH-TTTCEEEEECCGGGBTTSCSCCHHH----
T ss_pred CceeEEEeccCC-----CCCcEEEEECCCCcccc---ch-hHHHHHHHHH-HCCcEEEEEeccCCCCCCCCccccC----
Confidence 557777666422 23478999999654422 12 2234456667 7799999995 58999875311
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHh--hCCCceEEEEEcCCCCCccc--cc-----c-
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA--RFPDVFQCAVSGAPVTSWDG--YD-----T- 680 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~--~~~~~~~~~v~~~~~~~~~~--~~-----~- 680 (776)
...|+.+.++++.+.. +.+++.|+||||||.+++.++. .+|++++++|+.+|...... +. .
T Consensus 90 -------~~~d~~~~~~~l~~~l--~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~~~~~~~~~~~~ 160 (335)
T 2q0x_A 90 -------DAEDVDDLIGILLRDH--CMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPENPLFTPEGCAAR 160 (335)
T ss_dssp -------HHHHHHHHHHHHHHHS--CCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTSTTTSHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHc--CCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchhcccCHHHHHHH
Confidence 2567888888887642 4579999999999999999998 47999999999877543210 00 0
Q ss_pred ------ccc----------ccccCCCCCCccchh-------------------cCChhhhhccCCCcEEEEecCCCCccC
Q 004067 681 ------FYT----------EKYMGLPSEDPVGYE-------------------YSSVMHHVHKMKGKLLLVHGMIDENVH 725 (776)
Q Consensus 681 ------~~~----------~~~~~~~~~~~~~~~-------------------~~~~~~~~~~i~~P~lii~G~~D~~v~ 725 (776)
... ..+...+. ....+. ..+....+.++++|+|+++|++|.++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp 239 (335)
T 2q0x_A 161 KEHVEKLMAEGRGEDSLAMLKHYDIPI-TPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKP 239 (335)
T ss_dssp HHHHHHHHHHTCTTCGGGGTTTCSSCC-CHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCC
T ss_pred HHHHHHHhhccCccccccchhhccCcc-CHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCC
Confidence 000 00000000 000000 001123467889999999999999999
Q ss_pred hHH-HHHHHHHHHHCCCCeE--------E-----EEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 726 FRH-TARLINALVAARKPYE--------I-----LIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 726 ~~~-~~~~~~~l~~~~~~~~--------~-----~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+.. ...+.+.+.+.-...+ + ++++++|| +..+.+.+||.+.
T Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~ 294 (335)
T 2q0x_A 240 SDEEVGTVLEGVRDHTGCNRVTVSYFNDTCDELRRVLKAAES---------EHVAAILQFLADE 294 (335)
T ss_dssp CHHHHHHHHHHHHHHSSSSCEEEEECCCEECTTSCEEECCHH---------HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhcCccccccccccchhhhhhcccCCCCC---------HHHHHHHHHHHhh
Confidence 864 2233344433323344 5 78999999 3478889998753
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=142.85 Aligned_cols=274 Identities=9% Similarity=0.039 Sum_probs=177.0
Q ss_pred CCceeEcCCC-CEEEEEeCCCCcCcceEEEEecCCCce------EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 004067 57 PTSIGFSPDD-NLITYLLSPDHSLSRKVFSFDPKTCKQ------ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR 129 (776)
Q Consensus 57 ~~~~~~SpDG-~~ia~~~~~~~~~~~~l~~~~~~~~~~------~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (776)
+..++|||++ +.|+-.+. + ..|.+|++.+.+. +.+..| ...+..
T Consensus 20 V~~l~~~~~~~~~l~s~s~-D----~~v~~W~~~~~~~~~~~~~~~~~~h------------------------~~~v~~ 70 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASR-D----KTLISWKLTGDDQKFGVPVRSFKGH------------------------SHIVQD 70 (319)
T ss_dssp EEEEEECSSCTTEEEEEET-T----SEEEEEEEEEETTEEEEEEEEEECC------------------------SSCEEE
T ss_pred EEEEEccCCCccEEEEecC-C----ccEEEecCCCCCccccccceEEeCC------------------------cccEEE
Confidence 5788999976 66664433 3 4699998865321 223332 246888
Q ss_pred EEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEee
Q 004067 130 YEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTH 207 (776)
Q Consensus 130 ~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~ 207 (776)
..|+| ||++|+.. .++.|.+||+.+++....+..... .+....|+|+++.|+..+. +.|.+|++.+.....+..
T Consensus 71 ~~~s~---dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 146 (319)
T 3frx_A 71 CTLTA---DGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG 146 (319)
T ss_dssp EEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECC
T ss_pred EEECC---CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 99999 99999876 688999999999887645554443 4888999999999988875 469999998655444422
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCC------CeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDS------KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
... + +..+.|+|++ ..|+..+.+
T Consensus 147 h~~----------~--------v~~~~~~~~~~~~~~~~~l~s~~~d--------------------------------- 175 (319)
T 3frx_A 147 HND----------W--------VSQVRVVPNEKADDDSVTIISAGND--------------------------------- 175 (319)
T ss_dssp CSS----------C--------EEEEEECCC------CCEEEEEETT---------------------------------
T ss_pred cCC----------c--------EEEEEEccCCCCCCCccEEEEEeCC---------------------------------
Confidence 111 1 3466788854 355544432
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCc
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 361 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 361 (776)
..|.+||+.+++..... ..+...+..++|||||+.|+..+ .+..|.+||+.+++...........
T Consensus 176 ---~~i~~wd~~~~~~~~~~--------~~h~~~v~~~~~sp~g~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~v 240 (319)
T 3frx_A 176 ---KMVKAWNLNQFQIEADF--------IGHNSNINTLTASPDGTLIASAG----KDGEIMLWNLAAKKAMYTLSAQDEV 240 (319)
T ss_dssp ---SCEEEEETTTTEEEEEE--------CCCCSCEEEEEECTTSSEEEEEE----TTCEEEEEETTTTEEEEEEECCSCE
T ss_pred ---CEEEEEECCcchhheee--------cCCCCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcEEEEecCCCcE
Confidence 24789999887654431 45677899999999999887765 4567999999988765544443332
Q ss_pred eeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-cccc--------CCeEEEEEEeecCCCcEEEEEE
Q 004067 362 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITE--------GDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~--------~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
+. -.|+| ++.++..+..+ .+.+|+++.+... .+.. ....+..+ .|||||++|+..+
T Consensus 241 ~~---~~~sp--------~~~~la~~~~~---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~spdg~~l~sg~ 305 (319)
T 3frx_A 241 FS---LAFSP--------NRYWLAAATAT---GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGY 305 (319)
T ss_dssp EE---EEECS--------SSSEEEEEETT---EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE-EECTTSSEEEEEE
T ss_pred EE---EEEcC--------CCCEEEEEcCC---CcEEEEeCcCeeeeccCccccccccCcCcceeEE-EECCCCCEEEEee
Confidence 21 12333 22344444333 4777777665422 1111 12234444 4999999766544
Q ss_pred ccCCCceeeEEEEEe
Q 004067 433 TLDGPLESHLYCAKL 447 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~ 447 (776)
.++. +.||.+..
T Consensus 306 -~Dg~--i~vWd~~t 317 (319)
T 3frx_A 306 -TDNV--IRVWQVMT 317 (319)
T ss_dssp -TTSC--EEEEEEEE
T ss_pred -cCce--EEEEEEee
Confidence 4433 88998874
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-14 Score=153.50 Aligned_cols=286 Identities=9% Similarity=0.051 Sum_probs=179.3
Q ss_pred CCceeEcCCC-CEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDD-NLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG-~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++||||| +.|+..+. + ..|.+||+.+++......... +...+..+.|+|
T Consensus 76 v~~~~~~~~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~---------------------h~~~v~~~~~~~- 128 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSK-G----GDIILWDYDVQNKTSFIQGMG---------------------PGDAITGMKFNQ- 128 (383)
T ss_dssp EEEEEECSSCTTEEEEEEB-T----SCEEEEETTSTTCEEEECCCS---------------------TTCBEEEEEEET-
T ss_pred EEEEEECCCCCCEEEEEcC-C----CeEEEEeCCCcccceeeecCC---------------------cCCceeEEEeCC-
Confidence 5789999999 88876554 2 369999999888766553110 124688999999
Q ss_pred CCCc-eEEEEe-CCCcEEEEeCCCCccceecCCCC--CCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCC
Q 004067 136 SSKK-KIIMVP-LPDGIYFQDLSCSKPELKLSSSS--CSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 136 ~~dg-~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~ 210 (776)
++ +.|+.. .++.|.+||+.+.... .+.... ...+..+.|+||++.|+.... +.|++|++.+.....+.....
T Consensus 129 --~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~ 205 (383)
T 3ei3_B 129 --FNTNQLFVSSIRGATTLRDFSGSVIQ-VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKA 205 (383)
T ss_dssp --TEEEEEEEEETTTEEEEEETTSCEEE-EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSS
T ss_pred --CCCCEEEEEeCCCEEEEEECCCCceE-EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCC
Confidence 75 445444 7789999999986665 444332 134778999999999988875 579999996554444432221
Q ss_pred CCceecCCcccceecccCCcceEEECCCCC-eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSK-FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
.+..++|+||++ .|+..+.+ ..|.+
T Consensus 206 ------------------~v~~~~~~~~~~~~l~s~~~d------------------------------------~~i~i 231 (383)
T 3ei3_B 206 ------------------KVTHAEFNPRCDWLMATSSVD------------------------------------ATVKL 231 (383)
T ss_dssp ------------------CEEEEEECSSCTTEEEEEETT------------------------------------SEEEE
T ss_pred ------------------cEEEEEECCCCCCEEEEEeCC------------------------------------CEEEE
Confidence 155789999999 55544422 35899
Q ss_pred EEcCC----CceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCcee
Q 004067 290 VSAAG----GPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWV 363 (776)
Q Consensus 290 ~d~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~ 363 (776)
||+.+ ++.... ..+...+..++|+| ||+.++..+ .+..|.+||+.++.. ..+..+....+.
T Consensus 232 wd~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 232 WDLRNIKDKNSYIAE---------MPHEKPVNAAYFNPTDSTKLLTTD----QRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEGGGCCSTTCEEEE---------EECSSCEEEEEECTTTSCEEEEEE----SSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EeCCCCCcccceEEE---------ecCCCceEEEEEcCCCCCEEEEEc----CCCcEEEEECCCCccccccccccccccc
Confidence 99987 333332 23566789999999 999887665 345799999988765 344333211110
Q ss_pred ---ecccccccCCCC--ccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCC-eEEEEEEeecCCCcEEEEEEccCC
Q 004067 364 ---NLHDCFTPLDKG--VTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGD-WMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 364 ---~~~~~~~~~~~~--~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~-~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
.....|.|.... +.+.+++.+ +...+| .|++||+.+++ ...+..+. ..+...+.|+++|+.|+..+ ++
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~--~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s--d~ 373 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKR--TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM--GF 373 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT-CTTCCC--CEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE--TT
T ss_pred cccceEEeccCCCCceEEEecCCccc-ccCCCC--eEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec--CC
Confidence 001112221110 011111111 222344 89999987665 45555432 23334445999999765553 33
Q ss_pred CceeeEEEEE
Q 004067 437 PLESHLYCAK 446 (776)
Q Consensus 437 ~~~~~l~~~~ 446 (776)
.+.+|.++
T Consensus 374 --~i~iw~~~ 381 (383)
T 3ei3_B 374 --NILIWNRE 381 (383)
T ss_dssp --EEEEEECC
T ss_pred --cEEEEecC
Confidence 37788764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-14 Score=148.73 Aligned_cols=276 Identities=11% Similarity=0.017 Sum_probs=175.6
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCC-----------------CCccCceeCCCCCEEEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSC-----------------SPVIDPHLSSDGTMIAFV 187 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~-----------------~~~~~~~~SpDg~~la~~ 187 (776)
..+....||| ||++|+...++.+.+|++.+++....+..... ..+..+.|||||+.|+..
T Consensus 65 ~~V~~v~fsp---dg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 65 SVVCCVKFSN---DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp SCCCEEEECT---TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CEEEEEEECC---CCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 3578899999 99999998888999999988876533332110 125578999999999988
Q ss_pred EC-CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCC
Q 004067 188 RD-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVG 266 (776)
Q Consensus 188 ~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (776)
+. +.|.+||+.+++.......... .+..+.|+|||+.|+..+.+
T Consensus 142 ~~d~~i~iwd~~~~~~~~~~~~h~~-----------------~v~~~~~~p~~~~l~s~s~d------------------ 186 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIVMILQGHEQ-----------------DIYSLDYFPSGDKLVSGSGD------------------ 186 (393)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSS-----------------CEEEEEECTTSSEEEEEETT------------------
T ss_pred cCCCeEEEEECCCCcEEEEEccCCC-----------------CEEEEEEcCCCCEEEEecCC------------------
Confidence 75 5799999998876554332211 14578899999998876643
Q ss_pred CCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEE
Q 004067 267 SEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d 345 (776)
..|.+||+.+++.... ......+..++|+| ||+.++..+ .+..|.+||
T Consensus 187 ------------------~~v~iwd~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~s----~d~~v~iwd 235 (393)
T 1erj_A 187 ------------------RTVRIWDLRTGQCSLT---------LSIEDGVTTVAVSPGDGKYIAAGS----LDRAVRVWD 235 (393)
T ss_dssp ------------------SEEEEEETTTTEEEEE---------EECSSCEEEEEECSTTCCEEEEEE----TTSCEEEEE
T ss_pred ------------------CcEEEEECCCCeeEEE---------EEcCCCcEEEEEECCCCCEEEEEc----CCCcEEEEE
Confidence 3589999998876543 12334578899999 888777665 345699999
Q ss_pred CCCCceEEEEE--------eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-------------
Q 004067 346 IKTGQRKVILV--------EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC------------- 404 (776)
Q Consensus 346 ~~~g~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~------------- 404 (776)
+.++....... +....+. -.|+| ++.++++...+| .|.+||+....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~v~~---v~~~~--------~g~~l~s~s~d~--~v~~wd~~~~~~~~~~~~~~~~~~ 302 (393)
T 1erj_A 236 SETGFLVERLDSENESGTGHKDSVYS---VVFTR--------DGQSVVSGSLDR--SVKLWNLQNANNKSDSKTPNSGTC 302 (393)
T ss_dssp TTTCCEEEEEC------CCCSSCEEE---EEECT--------TSSEEEEEETTS--EEEEEEC---------------CE
T ss_pred CCCCcEEEeecccccCCCCCCCCEEE---EEECC--------CCCEEEEEeCCC--EEEEEECCCCCCcccccCCCCCcc
Confidence 99887543321 1111111 11222 234566666677 88888876432
Q ss_pred eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcC------CcC
Q 004067 405 LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDH------NMR 477 (776)
Q Consensus 405 ~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~sp------dg~ 477 (776)
...+..+...+..+. |++++++|+.. ..++ .+.+|.+. .|. .+..+..+. .+..+.+++ +++
T Consensus 303 ~~~~~~h~~~v~~~~-~~~~~~~l~sg-s~D~--~v~iwd~~---~~~----~~~~l~~h~~~v~~v~~~~~~~~~p~~~ 371 (393)
T 1erj_A 303 EVTYIGHKDFVLSVA-TTQNDEYILSG-SKDR--GVLFWDKK---SGN----PLLMLQGHRNSVISVAVANGSSLGPEYN 371 (393)
T ss_dssp EEEEECCSSCEEEEE-ECGGGCEEEEE-ETTS--EEEEEETT---TCC----EEEEEECCSSCEEEEEECSSCTTCTTCE
T ss_pred eEEEecccCcEEEEE-ECCCCCEEEEE-eCCC--eEEEEECC---CCe----EEEEECCCCCCEEEEEecCCcCcCCCCC
Confidence 122333444455554 89999865544 4443 36666544 333 445565554 466777776 666
Q ss_pred EEEEEeeCCCCCCEEEEEEc
Q 004067 478 NFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 478 ~l~~~~~~~~~~~~i~~~~~ 497 (776)
.|+... .+ ..|.+|+.
T Consensus 372 ~l~sgs-~D---g~i~iW~~ 387 (393)
T 1erj_A 372 VFATGS-GD---CKARIWKY 387 (393)
T ss_dssp EEEEEE-TT---SEEEEEEE
T ss_pred EEEEEC-CC---CcEEECcc
Confidence 555443 32 35777775
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-15 Score=153.75 Aligned_cols=288 Identities=8% Similarity=0.041 Sum_probs=181.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||+.++...... .....|.+|++.+++...+... .+...+....|+|.+
T Consensus 21 v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREI----------------------EKAKPIKCGTFGATS 77 (357)
T ss_dssp EEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEE----------------------EESSCEEEEECTTCC
T ss_pred eEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeee----------------------cccCcEEEEEEcCCC
Confidence 48899999998887666431 0135799999999886544321 012478899999922
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCc-cceecCCCCCCCccCc------eeCCCCCEEEEEEC-CcEEEEecCCCc-e-eEE
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSK-PELKLSSSSCSPVIDP------HLSSDGTMIAFVRD-CELHVLNLLINE-Q-RQL 205 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~------~~SpDg~~la~~~~-~~l~~~~l~~g~-~-~~l 205 (776)
++|+.|+.. .++.|.+||+.+++ ....+..... .+..+ .||||++.|+.... +.|.+|++.+++ . ..+
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc-ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 126888876 68899999999887 4424444333 35555 67899999988875 579999999876 2 333
Q ss_pred eeCCCCCceecCCcccceecccCCcceEE----ECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYW----WSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
...... .. ..+..+. |+||++.|+....+
T Consensus 157 ~~~~~~--~~------------~~v~~~~~~~~~~~~~~~l~~~~~d--------------------------------- 189 (357)
T 3i2n_A 157 EPVQGE--NK------------RDCWTVAFGNAYNQEERVVCAGYDN--------------------------------- 189 (357)
T ss_dssp CCCTTS--CC------------CCEEEEEEECCCC-CCCEEEEEETT---------------------------------
T ss_pred cccCCC--CC------------CceEEEEEEeccCCCCCEEEEEccC---------------------------------
Confidence 211110 00 0022344 89999988876632
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc---CCeEEEEEEeecCceEEEEEEECCCCceE-EEE--
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH---GNILTAQVLNRSQTKLKVLKFDIKTGQRK-VIL-- 355 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~-- 355 (776)
..|++||+.+++.... ..+...+..+.|+| +++.++... .+..|.+||+.++... .+.
T Consensus 190 ---~~i~i~d~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~ 253 (357)
T 3i2n_A 190 ---GDIKLFDLRNMALRWE---------TNIKNGVCSLEFDRKDISMNKLVATS----LEGKFHVFDMRTQHPTKGFASV 253 (357)
T ss_dssp ---SEEEEEETTTTEEEEE---------EECSSCEEEEEESCSSSSCCEEEEEE----STTEEEEEEEEEEETTTEEEEE
T ss_pred ---CeEEEEECccCceeee---------cCCCCceEEEEcCCCCCCCCEEEEEC----CCCeEEEEeCcCCCcccceeee
Confidence 3589999999887554 33456789999999 898777765 3456889998765432 111
Q ss_pred ---EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc--------------------eeeccccCC
Q 004067 356 ---VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT--------------------CLGPITEGD 412 (776)
Q Consensus 356 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~--------------------~~~~lt~~~ 412 (776)
.+....+. -.|+| ++..++++...+| .|++|++..+ ....+..+.
T Consensus 254 ~~~~~~~~v~~---~~~~~-------~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 254 SEKAHKSTVWQ---VRHLP-------QNRELFLTAGGAG--GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EEECCSSCEEE---EEEET-------TEEEEEEEEETTS--EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred ccCCCcCCEEE---EEECC-------CCCcEEEEEeCCC--cEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 12221111 11222 1222566666777 7777876542 233344455
Q ss_pred eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 413 WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 413 ~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
..+..+. |+++|+.+++++..++. +.+|.+.
T Consensus 322 ~~v~~~~-~s~~~~~l~~s~~~d~~--i~iw~~~ 352 (357)
T 3i2n_A 322 QPISSLD-WSPDKRGLCVCSSFDQT--VRVLIVT 352 (357)
T ss_dssp SCEEEEE-ECSSSTTEEEEEETTSE--EEEEEEC
T ss_pred CCeeEEE-EcCCCCeEEEEecCCCc--EEEEECC
Confidence 5566654 99999988877766643 7788775
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-15 Score=168.23 Aligned_cols=292 Identities=12% Similarity=0.088 Sum_probs=198.0
Q ss_pred eEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
..+++|.+++|.....+....-+|+.+.+++ .+.|.+.+. ++.++ ...+..+.||| ||+
T Consensus 83 ~p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~-~~vllD~n~-------la~~~----------~~~l~~~~~Sp---Dg~ 141 (693)
T 3iuj_A 83 APFREGRYHYFFKNDGLQNQNVLWRQQEGKP-AEVFLDPNT-------LSPDG----------TTALDQLSFSR---DGR 141 (693)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEECTTSC-CEEEECGGG-------GSTTS----------CCEEEEEEECT---TSS
T ss_pred CCEEECCEEEEEEEcCCCceeEEEEeCCCCC-cEEEEehhh-------ccCCC----------cEEEEEEEECC---CCC
Confidence 3478999999998866554557888765544 456664322 11111 12466789999 999
Q ss_pred EEEEeCC------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC--------------cEEEEecCCC
Q 004067 141 IIMVPLP------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC--------------ELHVLNLLIN 200 (776)
Q Consensus 141 ~l~~~~~------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~--------------~l~~~~l~~g 200 (776)
+|+|..+ ..|+++|+++|+.. ..+.. ......+.|| ||+.|+|++.. +||++++.++
T Consensus 142 ~lAy~~~~~G~~~~~i~v~dl~tg~~~-~~~~~-~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~ 218 (693)
T 3iuj_A 142 ILAYSLSLAGSDWREIHLMDVESKQPL-ETPLK-DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTA 218 (693)
T ss_dssp EEEEEEECSSCCEEEEEEEETTTCSEE-EEEEE-EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSC
T ss_pred EEEEEEecCCCceEEEEEEECCCCCCC-ccccC-CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCC
Confidence 9999722 46999999999876 43221 1124678999 99999999854 3999999877
Q ss_pred ce--eEEeeCCC-CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC
Q 004067 201 EQ--RQLTHGAN-GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277 (776)
Q Consensus 201 ~~--~~lt~~~~-~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (776)
+. +.+..... . ..| ...+.|||||++|++.+.....
T Consensus 219 ~~~~~~v~~~~~~~-------~~~--------~~~~~~SpDg~~l~~~~~~~~~-------------------------- 257 (693)
T 3iuj_A 219 QEDDRLVFGAIPAQ-------HHR--------YVGATVTEDDRFLLISAANSTS-------------------------- 257 (693)
T ss_dssp GGGCEEEESCSGGG-------CCS--------EEEEEECTTSCEEEEEEESSSS--------------------------
T ss_pred cccceEEEecCCCC-------CeE--------EEEEEEcCCCCEEEEEEccCCC--------------------------
Confidence 54 44443321 1 001 2367899999999987643221
Q ss_pred CCCCCCeEEEEEEEcCCC--ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce---E
Q 004067 278 AGASNVKVRLGVVSAAGG--PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR---K 352 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~---~ 352 (776)
..+|+++|++++ +.+.+.. .......+ |++||+.+++.++++.....|+++|++++.. +
T Consensus 258 ------~~~i~~~d~~~~~~~~~~l~~---------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~ 321 (693)
T 3iuj_A 258 ------GNRLYVKDLSQENAPLLTVQG---------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR 321 (693)
T ss_dssp ------CCEEEEEETTSTTCCCEEEEC---------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred ------CcEEEEEECCCCCCceEEEeC---------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE
Confidence 146899999877 5566643 22222333 8899988888888776678899999998765 6
Q ss_pred EEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCe-EEEEEEeecCCCcEEEEE
Q 004067 353 VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFT 431 (776)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~-~~~~~~~~s~dg~~i~~~ 431 (776)
.++.+..... .| +.+++.+++...++|..+|++++++|+..+.|+.... .+.. ..++++++.++|.
T Consensus 322 ~l~~~~~~~~-----~~-------s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~-~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 322 DLIPERQQVL-----TV-------HSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSG-FNGKHDDPALYFG 388 (693)
T ss_dssp EEECCCSSCE-----EE-------EEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEE-CCCCTTCSCEEEE
T ss_pred EEecCCCCEE-----EE-------EEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEe-eecCCCCCEEEEE
Confidence 6665543321 12 3446678888888899999999999988888875432 3333 3478899988888
Q ss_pred Ecc-CCCceeeEEEEEeC
Q 004067 432 GTL-DGPLESHLYCAKLY 448 (776)
Q Consensus 432 ~~~-~~~~~~~l~~~~~~ 448 (776)
.+. ..| ..||.+++.
T Consensus 389 ~ss~~tP--~~l~~~d~~ 404 (693)
T 3iuj_A 389 FENYAQP--PTLYRFEPK 404 (693)
T ss_dssp EECSSSC--CEEEEECTT
T ss_pred ecCCCCC--CEEEEEECC
Confidence 654 444 578888873
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-14 Score=146.80 Aligned_cols=283 Identities=11% Similarity=-0.017 Sum_probs=169.0
Q ss_pred CCCcEEEEeCCCCccceecCCCCCC-CccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccc
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCS-PVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYI 222 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~ 222 (776)
.++.|++||+.+++....+...... ....+.|||||+.+++... +.|+++++.+++.......+.....
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-------- 80 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER-------- 80 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE--------
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc--------
Confidence 6788999999998876334322211 2677999999999887765 4799999999876543222110000
Q ss_pred eecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEc
Q 004067 223 AQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDL 302 (776)
Q Consensus 223 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~ 302 (776)
......++|+|||+.|++........... + ......|++||+++++......
T Consensus 81 ----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~----~--------------------~~~~~~i~v~d~~~~~~~~~~~ 132 (337)
T 1pby_B 81 ----VKSLFGAALSPDGKTLAIYESPVRLELTH----F--------------------EVQPTRVALYDAETLSRRKAFE 132 (337)
T ss_dssp ----EECTTCEEECTTSSEEEEEEEEEEECSSC----E--------------------EECCCEEEEEETTTTEEEEEEE
T ss_pred ----cccccceEECCCCCEEEEEeccccccccc----c--------------------cccCceEEEEECCCCcEEEEEe
Confidence 00134788999999988765210000000 0 0001468999999887654311
Q ss_pred ccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCe
Q 004067 303 QCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG 382 (776)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (776)
.......+.|||||+.+++. + ..|++||+++++......... |. ....|+|.+ ..
T Consensus 133 ---------~~~~~~~~~~s~dg~~l~~~-~-----~~i~~~d~~~~~~~~~~~~~~--~~-~~~~~s~dg-------~~ 187 (337)
T 1pby_B 133 ---------APRQITMLAWARDGSKLYGL-G-----RDLHVMDPEAGTLVEDKPIQS--WE-AETYAQPDV-------LA 187 (337)
T ss_dssp ---------CCSSCCCEEECTTSSCEEEE-S-----SSEEEEETTTTEEEEEECSTT--TT-TTTBCCCBC-------CC
T ss_pred ---------CCCCcceeEECCCCCEEEEe-C-----CeEEEEECCCCcEeeeeeccc--cC-CCceeCCCc-------cE
Confidence 11234557899999977666 1 249999999987654433221 10 011233322 21
Q ss_pred EEEEeccCCc---------------------eEEEEEeCCCceeecccc--CCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 383 FIWASEKTGF---------------------RHLYLHDINGTCLGPITE--GDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 383 ~~~~s~~~g~---------------------~~l~~~~~~g~~~~~lt~--~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
+++....++. ..|+++|+.+++...++. ....... +.|++||+++|+. +
T Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~---~---- 259 (337)
T 1pby_B 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS-TAVNPAKTRAFGA---Y---- 259 (337)
T ss_dssp CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE-EEECTTSSEEEEE---E----
T ss_pred EeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceee-EEECCCCCEEEEe---C----
Confidence 2222111111 168999998887653322 1222333 3599999998877 1
Q ss_pred eeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
..|+.+++. .+. ....+........+.|+|||++|+... . ...|.++|..+++.+..+
T Consensus 260 ~~v~~~d~~-~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~-~---~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 260 NVLESFDLE-KNA----SIKRVPLPHSYYSVNVSTDGSTVWLGG-A---LGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp SEEEEEETT-TTE----EEEEEECSSCCCEEEECTTSCEEEEES-B---SSEEEEEETTTCCEEEEE
T ss_pred CeEEEEECC-CCc----CcceecCCCceeeEEECCCCCEEEEEc-C---CCcEEEEECcCCcEEEEE
Confidence 256666763 232 344555444567889999999887752 2 257999999888876655
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=157.85 Aligned_cols=216 Identities=11% Similarity=-0.018 Sum_probs=132.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|..+++....+ . ...|+||++||.+++.. .|...+..|+ .+|.|+++|+||+|.|....
T Consensus 11 ~~g~~l~y~~~~~-G-----~~~p~vvllHG~~~~~~-------~w~~~~~~L~-~~~rvia~DlrGhG~S~~~~----- 71 (276)
T 2wj6_A 11 VFDNKLSYIDNQR-D-----TDGPAILLLPGWCHDHR-------VYKYLIQELD-ADFRVIVPNWRGHGLSPSEV----- 71 (276)
T ss_dssp ETTEEEEEEECCC-C-----CSSCEEEEECCTTCCGG-------GGHHHHHHHT-TTSCEEEECCTTCSSSCCCC-----
T ss_pred eCCeEEEEEEecC-C-----CCCCeEEEECCCCCcHH-------HHHHHHHHHh-cCCEEEEeCCCCCCCCCCCC-----
Confidence 3788888776521 1 12378999999876543 3445566776 46999999999999986421
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCccc------c------
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG------Y------ 678 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~~------~------ 678 (776)
..+.++++.+.+..+++.- +.+++.++||||||.+++.+|.++ |++++++|+.++...... .
T Consensus 72 ---~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~ 146 (276)
T 2wj6_A 72 ---PDFGYQEQVKDALEILDQL--GVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDP 146 (276)
T ss_dssp ---CCCCHHHHHHHHHHHHHHH--TCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHHHHHHHHCT
T ss_pred ---CCCCHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHHHhhhccCc
Confidence 1233555555554444432 346899999999999999999999 999999998865321000 0
Q ss_pred c------ccccccccCCC--------------CCCccchh------------cCChhhhhccCCCcEEEEecCCCCccCh
Q 004067 679 D------TFYTEKYMGLP--------------SEDPVGYE------------YSSVMHHVHKMKGKLLLVHGMIDENVHF 726 (776)
Q Consensus 679 ~------~~~~~~~~~~~--------------~~~~~~~~------------~~~~~~~~~~i~~P~lii~G~~D~~v~~ 726 (776)
. ..+...+.... ......+. .......+.++++|+++++|..|...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~~~~~~~~~ 226 (276)
T 2wj6_A 147 ERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPE 226 (276)
T ss_dssp TTHHHHHHHHHHHHHTTBCCHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEEECCSCSHH
T ss_pred chHHHHHHHHHHHhhcccchHHHHHHHHHHhhhcchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEEecCccchh
Confidence 0 00000000000 00000000 0112334567889999988754433221
Q ss_pred HHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 727 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
. ....+.+.+.-.+.+++++|++||.. ..+.++++.+.+.+||.+
T Consensus 227 ~--~~~~~~~~~~~p~a~~~~i~~~gH~~-~~e~P~~~~~~i~~Fl~~ 271 (276)
T 2wj6_A 227 Y--EKINSDFAEQHPWFSYAKLGGPTHFP-AIDVPDRAAVHIREFATA 271 (276)
T ss_dssp H--HHHHHHHHHHCTTEEEEECCCSSSCH-HHHSHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHhhCCCeEEEEeCCCCCcc-cccCHHHHHHHHHHHHhh
Confidence 1 11122233334678999999999976 567789999999999975
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-13 Score=144.87 Aligned_cols=289 Identities=10% Similarity=0.053 Sum_probs=176.2
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccce--ecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPEL--KLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~ 201 (776)
.+....|+| ||+.|+.. .++.|.+||+.++.... .+..+....+..++|||||+.|+..+. +.+.+|++.++.
T Consensus 18 ~v~~l~~sp---~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~ 94 (345)
T 3fm0_A 18 RCWFLAWNP---AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD 94 (345)
T ss_dssp CEEEEEECT---TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-
T ss_pred cEEEEEECC---CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC
Confidence 577899999 99999976 68899999998876331 222333335788999999999998875 578999988775
Q ss_pred eeEEee-CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 202 QRQLTH-GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 202 ~~~lt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
.+.+.. .+.. ..+..++|+|||+.|+..+.+
T Consensus 95 ~~~~~~~~~h~----------------~~v~~v~~sp~~~~l~s~s~D-------------------------------- 126 (345)
T 3fm0_A 95 FECVTTLEGHE----------------NEVKSVAWAPSGNLLATCSRD-------------------------------- 126 (345)
T ss_dssp EEEEEEECCCS----------------SCEEEEEECTTSSEEEEEETT--------------------------------
T ss_pred eEEEEEccCCC----------------CCceEEEEeCCCCEEEEEECC--------------------------------
Confidence 443322 2111 114578999999999877644
Q ss_pred CCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE---E
Q 004067 281 SNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL---V 356 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~---~ 356 (776)
..|++||+.+++.. .+... ..+...+..+.|+|||+.|+..+ .+..|.+||..++....+. .
T Consensus 127 ----~~v~iwd~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~l~s~s----~d~~i~~w~~~~~~~~~~~~~~~ 192 (345)
T 3fm0_A 127 ----KSVWVWEVDEEDEYECVSVL------NSHTQDVKHVVWHPSQELLASAS----YDDTVKLYREEEDDWVCCATLEG 192 (345)
T ss_dssp ----SCEEEEEECTTSCEEEEEEE------CCCCSCEEEEEECSSSSCEEEEE----TTSCEEEEEEETTEEEEEEEECC
T ss_pred ----CeEEEEECCCCCCeEEEEEe------cCcCCCeEEEEECCCCCEEEEEe----CCCcEEEEEecCCCEEEEEEecC
Confidence 23789998876432 22221 45666789999999999877765 3445888998877644322 2
Q ss_pred eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeC--CCce--------------eecccc-CCeEEEEEE
Q 004067 357 EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDI--NGTC--------------LGPITE-GDWMVEQIV 419 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~--~g~~--------------~~~lt~-~~~~~~~~~ 419 (776)
+....+.. .|+| ++.++++...+| .|.+|+. .+.. ...+.. +...+..+
T Consensus 193 h~~~v~~l---~~sp--------~g~~l~s~s~D~--~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v- 258 (345)
T 3fm0_A 193 HESTVWSL---AFDP--------SGQRLASCSDDR--TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI- 258 (345)
T ss_dssp CSSCEEEE---EECT--------TSSEEEEEETTS--CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEE-
T ss_pred CCCceEEE---EECC--------CCCEEEEEeCCC--eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEE-
Confidence 22222211 2333 234566666777 5666653 1111 111221 23334554
Q ss_pred eecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCcccccee-----ecCC-CCeEEEEEcCCcCEEEEEeeCCCCCCEEE
Q 004067 420 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK-----LTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRIL 493 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~-----l~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~i~ 493 (776)
.|+++++.++..+. ++. +.+|.++.. .... ..... +..+ ..+..++|+|++..++...+.+. .|.
T Consensus 259 ~~~~~~~~l~s~~~-d~~--i~vw~~~~~--~~~~-~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg---~v~ 329 (345)
T 3fm0_A 259 AWCQLTGALATACG-DDA--IRVFQEDPN--SDPQ-QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG---EVA 329 (345)
T ss_dssp EECTTTCCEEEEET-TSC--EEEEEECTT--SCTT-SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS---CEE
T ss_pred EEecCCCEEEEEeC-CCe--EEEEEeCCC--CCcc-eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC---cEE
Confidence 48999986555544 433 788887642 1110 11111 1222 34778999999865555555444 588
Q ss_pred EEEcCCCce
Q 004067 494 LCSLQDGSL 502 (776)
Q Consensus 494 ~~~~~~~~~ 502 (776)
+|+..+++.
T Consensus 330 ~W~~~~~~~ 338 (345)
T 3fm0_A 330 FWKYQRPEG 338 (345)
T ss_dssp EEEECC---
T ss_pred EEEecCCCC
Confidence 888866653
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-16 Score=154.94 Aligned_cols=200 Identities=13% Similarity=0.044 Sum_probs=129.3
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
.+.|+||++||.+++.. .|..++..|++. |.|+++|+||+|.+.... ....+.++.+.+..+++
T Consensus 18 ~~~~~vv~~HG~~~~~~-------~~~~~~~~l~~~-~~v~~~d~~G~G~s~~~~--------~~~~~~~~~~~~~~~l~ 81 (267)
T 3fla_A 18 DARARLVCLPHAGGSAS-------FFFPLAKALAPA-VEVLAVQYPGRQDRRHEP--------PVDSIGGLTNRLLEVLR 81 (267)
T ss_dssp TCSEEEEEECCTTCCGG-------GGHHHHHHHTTT-EEEEEECCTTSGGGTTSC--------CCCSHHHHHHHHHHHTG
T ss_pred CCCceEEEeCCCCCCch-------hHHHHHHHhccC-cEEEEecCCCCCCCCCCC--------CCcCHHHHHHHHHHHHH
Confidence 45689999999876543 344556777654 999999999998765321 12235566655555554
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCc----eEEEEEcCCCCCccccccc--------cccccc---CCCC---CC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDV----FQCAVSGAPVTSWDGYDTF--------YTEKYM---GLPS---ED 693 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~----~~~~v~~~~~~~~~~~~~~--------~~~~~~---~~~~---~~ 693 (776)
.. +..++.|+||||||.+++.++.++|++ ++++++.++.......... +...+. ..+. ..
T Consensus 82 ~~--~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (267)
T 3fla_A 82 PF--GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLAD 159 (267)
T ss_dssp GG--TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHS
T ss_pred hc--CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccC
Confidence 43 457899999999999999999999985 7888877665321110000 000000 0000 00
Q ss_pred c--------------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCC
Q 004067 694 P--------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 759 (776)
Q Consensus 694 ~--------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 759 (776)
. .......... ..++++|+|+++|++|..+++.....+.+.+ ..+++++++++ +|.+ ..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~g-gH~~-~~~ 233 (267)
T 3fla_A 160 PELLAMVLPAIRSDYRAVETYRHEP-GRRVDCPVTVFTGDHDPRVSVGEARAWEEHT---TGPADLRVLPG-GHFF-LVD 233 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT-TCCBSSCEEEEEETTCTTCCHHHHHGGGGGB---SSCEEEEEESS-STTH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccc-cCcCCCCEEEEecCCCCCCCHHHHHHHHHhc---CCCceEEEecC-Ccee-ecc
Confidence 0 0000001001 1467899999999999999988777766654 23589999998 9986 445
Q ss_pred cHHHHHHHHHHHHHHh
Q 004067 760 DRIYMEERIWEFIERT 775 (776)
Q Consensus 760 ~~~~~~~~~~~fl~~~ 775 (776)
..+++.+.+.+||++.
T Consensus 234 ~~~~~~~~i~~fl~~~ 249 (267)
T 3fla_A 234 QAAPMIATMTEKLAGP 249 (267)
T ss_dssp THHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHhccc
Confidence 7888999999998653
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-14 Score=145.62 Aligned_cols=268 Identities=11% Similarity=0.053 Sum_probs=174.6
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
..+....|+| ||+.|+.. .++.|.+||+.+++....+..... .+....|||||+.|+.... +.+.+|++.+++.
T Consensus 56 ~~v~~~~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 56 AKIYAMHWGT---DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp SCEEEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred CceEEEEECC---CCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 3688999999 99999876 788999999998876634443333 4778899999999988875 5689999887532
Q ss_pred --eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 203 --RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 203 --~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+...... +.. ..+..+.|+|+++ |+..+.+
T Consensus 132 ~~~~~~~~~-------~h~--------~~v~~~~~~~~~~-l~s~s~d-------------------------------- 163 (340)
T 1got_B 132 NVRVSRELA-------GHT--------GYLSCCRFLDDNQ-IVTSSGD-------------------------------- 163 (340)
T ss_dssp SCEEEEEEE-------CCS--------SCEEEEEEEETTE-EEEEETT--------------------------------
T ss_pred cceeEEEec-------CCC--------ccEEEEEECCCCc-EEEEECC--------------------------------
Confidence 1111100 011 1134677888886 5554432
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-ecc
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EEL 359 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~ 359 (776)
..|.+||+.+++....- ..+...+..++|+|||+.++..+ .+..|.+||+.++....... +..
T Consensus 164 ----~~i~~wd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~sg~----~d~~v~~wd~~~~~~~~~~~~h~~ 227 (340)
T 1got_B 164 ----TTCALWDIETGQQTTTF--------TGHTGDVMSLSLAPDTRLFVSGA----CDASAKLWDVREGMCRQTFTGHES 227 (340)
T ss_dssp ----SCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCSEEEEECCCSS
T ss_pred ----CcEEEEECCCCcEEEEE--------cCCCCceEEEEECCCCCEEEEEe----CCCcEEEEECCCCeeEEEEcCCcC
Confidence 24799999988755431 45667899999999999777665 34569999999887654433 222
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccCC--eEEEEEEeecCCCcEEEEEEccCC
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGD--WMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~~--~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
..... .|+| ++.++++...+| .|.+||+..++.. .+.... ..+..+ .|+|+|+.++..+ .++
T Consensus 228 ~v~~v---~~~p--------~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~g~-~d~ 292 (340)
T 1got_B 228 DINAI---CFFP--------NGNAFATGSDDA--TCRLFDLRADQELMTYSHDNIICGITSV-SFSKSGRLLLAGY-DDF 292 (340)
T ss_dssp CEEEE---EECT--------TSSEEEEEETTS--CEEEEETTTTEEEEEECCTTCCSCEEEE-EECTTSSEEEEEE-TTS
T ss_pred CEEEE---EEcC--------CCCEEEEEcCCC--cEEEEECCCCcEEEEEccCCcccceEEE-EECCCCCEEEEEC-CCC
Confidence 22211 2333 234566666677 8999998766533 333222 234554 4999999765544 333
Q ss_pred CceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEee
Q 004067 437 PLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 437 ~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~ 484 (776)
.+.+|.+. .+. ....+..+. .+..+.|+|||+.|+....
T Consensus 293 --~i~vwd~~---~~~----~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 293 --NCNVWDAL---KAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp --EEEEEETT---TCC----EEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred --eEEEEEcc---cCc----EeeEeecCCCcEEEEEEcCCCCEEEEEcC
Confidence 36677654 232 445565554 4678899999998876643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-13 Score=143.42 Aligned_cols=276 Identities=12% Similarity=0.052 Sum_probs=173.0
Q ss_pred CCceeE-----cC-CCCEEEEEeCCCCcCcceEEEEecCCCc-------e-EEeecCCCCCCCCCCCCHHHHHHHHHHHH
Q 004067 57 PTSIGF-----SP-DDNLITYLLSPDHSLSRKVFSFDPKTCK-------Q-ELVFSPPDGGLDENNISPEEKLRRERLRE 122 (776)
Q Consensus 57 ~~~~~~-----Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~-------~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 122 (776)
+..+.| +| ||+.|+-.+.+ ..|.+||+.+++ + ..+..|
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D-----~~v~iWd~~~~~~~~~~~~~~~~l~~h----------------------- 75 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRD-----KTVMIWKLYEEEQNGYFGIPHKALTGH----------------------- 75 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETT-----SCEEEEEECSSCCSSBSEEEEEEECCC-----------------------
T ss_pred hhheeeEEEeecCCCCCEEEEEcCC-----CEEEEEECCcCCcccccccccchhccC-----------------------
Confidence 467778 77 99999865542 469999987543 1 223322
Q ss_pred hcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCC
Q 004067 123 RGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLIN 200 (776)
Q Consensus 123 ~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g 200 (776)
...+....|+| |++.|+.. .++.|.+||+.+++....+..+.. .+..+.|||||+.|+..+. +.|.+|++.+.
T Consensus 76 -~~~V~~~~~~~---~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 76 -NHFVSDLALSQ---ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-EVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp -SSCEEEEEECS---STTEEEEEETTSEEEEEETTSSCEEEEEECCCS-CEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred -CCceEEEEECC---CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC-cEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 24688999999 99998866 688999999998876635554443 4888999999999988774 57999999844
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCC----------CeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDS----------KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
....+.... +...+ +..+.|+|++ +.|+..+.+
T Consensus 151 ~~~~~~~~~-------~~~~~--------v~~~~~~~~~~~~~~~~~~~~~l~s~~~d---------------------- 193 (343)
T 2xzm_R 151 CKFSSAEKE-------NHSDW--------VSCVRYSPIMKSANKVQPFAPYFASVGWD---------------------- 193 (343)
T ss_dssp EEEECCTTT-------SCSSC--------EEEEEECCCCCSCSCCCSSCCEEEEEETT----------------------
T ss_pred ceeeeeccc-------CCCce--------eeeeeeccccccccccCCCCCEEEEEcCC----------------------
Confidence 332221111 11111 4467899987 344444322
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-CC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TG 349 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~g 349 (776)
..|.+||........+ ..+...+..++|+|||++|+..+ .+..|.+||+. .+
T Consensus 194 --------------~~i~iwd~~~~~~~~~---------~~h~~~v~~~~~s~~g~~l~sgs----~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 194 --------------GRLKVWNTNFQIRYTF---------KAHESNVNHLSISPNGKYIATGG----KDKKLLIWDILNLT 246 (343)
T ss_dssp --------------SEEEEEETTTEEEEEE---------ECCSSCEEEEEECTTSSEEEEEE----TTCEEEEEESSCCS
T ss_pred --------------CEEEEEcCCCceeEEE---------cCccccceEEEECCCCCEEEEEc----CCCeEEEEECCCCc
Confidence 3578999554333333 34667789999999999887765 45679999994 33
Q ss_pred ceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec---cc-----------cCCeEE
Q 004067 350 QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP---IT-----------EGDWMV 415 (776)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~---lt-----------~~~~~~ 415 (776)
.............. -.|+| ++.++..+ .++ .+.+|++.+++... +. .+...+
T Consensus 247 ~~~~~~~~~~~v~~---v~~sp--------~~~~la~~-~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 312 (343)
T 2xzm_R 247 YPQREFDAGSTINQ---IAFNP--------KLQWVAVG-TDQ--GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312 (343)
T ss_dssp SCSEEEECSSCEEE---EEECS--------SSCEEEEE-ESS--CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE
T ss_pred ccceeecCCCcEEE---EEECC--------CCCEEEEE-CCC--CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce
Confidence 33333322222111 12333 22344443 344 58889987654322 22 122334
Q ss_pred EEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 416 EQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 416 ~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
..+ .|+|+|+.|+.. ..++ .+.+|.+..
T Consensus 313 ~~~-~~sp~g~~l~sg-~~Dg--~v~~w~~~~ 340 (343)
T 2xzm_R 313 TSL-AWNALGKKLFAG-FTDG--VIRTFSFET 340 (343)
T ss_dssp EEE-EECSSSCCEEEE-ETTS--EEEEEEEEE
T ss_pred EEE-EECCCCCeEEEe-cCCc--eEEEEEEEc
Confidence 554 499999976554 4444 388888764
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-16 Score=164.15 Aligned_cols=224 Identities=13% Similarity=0.018 Sum_probs=146.5
Q ss_pred CCCceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcE----EEEEC
Q 004067 521 LEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL----VWKLD 595 (776)
Q Consensus 521 ~~~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~----v~~~d 595 (776)
..+.+.+.+.+. .|..+.+++|.|++. ..+++|+|+++||+..... ......++.|++.|+. |+++|
T Consensus 165 ~G~v~~~~~~S~~~g~~~~~~vy~P~~~--~~~~~PvlvllHG~~~~~~------~~~~~~~~~l~~~g~~~p~iVV~~d 236 (403)
T 3c8d_A 165 EIPAKEIIWKSERLKNSRRVWIFTTGDV--TAEERPLAVLLDGEFWAQS------MPVWPVLTSLTHRQQLPPAVYVLID 236 (403)
T ss_dssp SSCCEEEEEEETTTTEEEEEEEEEC-------CCCCEEEESSHHHHHHT------SCCHHHHHHHHHTTSSCSCEEEEEC
T ss_pred CCceEEEEEEccccCCcEEEEEEeCCCC--CCCCCCEEEEeCCHHHhhc------CcHHHHHHHHHHcCCCCCeEEEEEC
Confidence 446778888875 577899999999864 2368999999999532211 1222346778877764 99999
Q ss_pred CCCCCCCchhhhhhhhhccCCccHHHH--HHHHHHHHHcC--CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCC
Q 004067 596 NRGTARRGLKFEASIKHNCGRIDAEDQ--LTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP 671 (776)
Q Consensus 596 ~rg~g~~~~~~~~~~~~~~~~~~~~D~--~~~i~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~ 671 (776)
++++......+ . ....+.+. .+++.++.++. ..|.++++|+|+||||++|+.++.++|++|+++++.+|
T Consensus 237 ~~~~~~r~~~~------~-~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg 309 (403)
T 3c8d_A 237 AIDTTHRAHEL------P-CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSG 309 (403)
T ss_dssp CCSHHHHHHHS------S-SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESC
T ss_pred CCCCccccccC------C-ChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEecc
Confidence 98632111110 0 01122332 24566666643 35788999999999999999999999999999999999
Q ss_pred CCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCC
Q 004067 672 VTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 751 (776)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 751 (776)
...+..... +.. ......... ........|+++++|+.|..+ ...+.++++.|++.|.++++.++++
T Consensus 310 ~~~~~~~~~---------~~~-~~~~~~~~~-~~~~~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~~G- 376 (403)
T 3c8d_A 310 SYWWPHRGG---------QQE-GVLLEKLKA-GEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG- 376 (403)
T ss_dssp CTTTTCTTS---------SSC-CHHHHHHHT-TSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-
T ss_pred ccccCCCCC---------CcH-HHHHHHHHh-ccccCCCceEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEeCC-
Confidence 875432210 000 000000000 001334578999999998654 5788999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 752 RHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 752 ~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+|.+ ......+..++.||.+.
T Consensus 377 gH~~---~~w~~~l~~~l~~l~~~ 397 (403)
T 3c8d_A 377 GHDA---LCWRGGLMQGLIDLWQP 397 (403)
T ss_dssp CSCH---HHHHHHHHHHHHHHHGG
T ss_pred CCCH---HHHHHHHHHHHHHHhcc
Confidence 6964 23445567777887654
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-16 Score=152.40 Aligned_cols=204 Identities=15% Similarity=0.061 Sum_probs=125.8
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC---------------------CCCchhhhhhhh
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT---------------------ARRGLKFEASIK 611 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~---------------------g~~~~~~~~~~~ 611 (776)
+.|.||++||..++.. .|......++..|.+.||.|+++|+|++ |.+ ..|..
T Consensus 4 ~~~~vl~lHG~g~~~~---~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~-~~w~~--- 76 (243)
T 1ycd_A 4 QIPKLLFLHGFLQNGK---VFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVN-RAWFY--- 76 (243)
T ss_dssp CCCEEEEECCTTCCHH---HHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCC-EESSC---
T ss_pred cCceEEEeCCCCccHH---HHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCC-ccccc---
Confidence 5689999999776654 2322222356677788999999999933 211 01100
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC------CceEEEEEcCCCCCccccccccccc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP------DVFQCAVSGAPVTSWDGYDTFYTEK 685 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (776)
........|+.++++++.+....+..+++|+||||||.+|+.++.+++ ..+++++..++........ .
T Consensus 77 -~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~-----~ 150 (243)
T 1ycd_A 77 -HSEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP-----E 150 (243)
T ss_dssp -CCSSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT-----T
T ss_pred -CCCCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc-----c
Confidence 001112345666666665532223468999999999999999998642 2456777777664321110 0
Q ss_pred ccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC---CCeEEEEecCCCCCCCCCCcHH
Q 004067 686 YMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR---KPYEILIFPDERHMPRRHRDRI 762 (776)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~---~~~~~~~~~~~~H~~~~~~~~~ 762 (776)
+.+... ....+. .....+.++++|+|++||++|.++|+..+..+++.+...+ .....++++++||.+... .
T Consensus 151 ~~~~~~-~~~~~~--~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gH~~~~~---~ 224 (243)
T 1ycd_A 151 HPGELR-ITEKFR--DSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNK---K 224 (243)
T ss_dssp STTCEE-ECGGGT--TTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEEESSSSSCCCC---H
T ss_pred cccccc-cchhHH--HhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEecCCCCcCCch---H
Confidence 000000 000010 1112345678999999999999999999999999887641 112345666789987432 3
Q ss_pred HHHHHHHHHHHHh
Q 004067 763 YMEERIWEFIERT 775 (776)
Q Consensus 763 ~~~~~~~~fl~~~ 775 (776)
.+.+.+.+||+++
T Consensus 225 ~~~~~i~~fl~~~ 237 (243)
T 1ycd_A 225 DIIRPIVEQITSS 237 (243)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5889999999875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-14 Score=148.24 Aligned_cols=294 Identities=12% Similarity=0.022 Sum_probs=183.0
Q ss_pred CCeeeEEEeecCCCceEEEEeC-----CCcEEEEeCCCCccceecCCCCCCCccCceeCCC---CCEEEEEEC-CcEEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL-----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSD---GTMIAFVRD-CELHVL 195 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~-----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpD---g~~la~~~~-~~l~~~ 195 (776)
..+....|+| ||+.++... ++.|++||+.+++............+..+.|+|+ |+.|+.... +.|.+|
T Consensus 19 ~~v~~~~~~p---~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 19 YTVFDCKWVP---CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp SCEEEEEECT---TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CceEEEEEcC---CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 4788999999 998777654 7889999999987652222122234788999999 688887774 579999
Q ss_pred ecCCCc-eeEEeeCCCCCceecCCcccceecccCCcceE------EECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 196 NLLINE-QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGY------WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 196 ~l~~g~-~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~------~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
++.+++ .......... . +..+ +|+||++.|+....+
T Consensus 96 d~~~~~~~~~~~~~~~~-~----------------v~~~~~~~~~~~s~~~~~l~~~~~d-------------------- 138 (357)
T 3i2n_A 96 NLEAPEMPVYSVKGHKE-I----------------INAIDGIGGLGIGEGAPEIVTGSRD-------------------- 138 (357)
T ss_dssp CTTSCSSCSEEECCCSS-C----------------EEEEEEESGGGCC-CCCEEEEEETT--------------------
T ss_pred eCCCCCccEEEEEeccc-c----------------eEEEeeccccccCCCccEEEEEeCC--------------------
Confidence 999886 3222221111 0 2233 478999998876643
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCc--eEEEEcccCCCCCCCCcceEEEEE----eccCCeEEEEEEeecCceEEEE
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVN----WMHGNILTAQVLNRSQTKLKVL 342 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~----~SpDg~~l~~~~~~~~~~~~l~ 342 (776)
..|.+||+.+++ ...+.... ......+..+. |+||++.++... .+..|+
T Consensus 139 ----------------~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~l~~~~----~d~~i~ 193 (357)
T 3i2n_A 139 ----------------GTVKVWDPRQKDDPVANMEPVQ-----GENKRDCWTVAFGNAYNQEERVVCAGY----DNGDIK 193 (357)
T ss_dssp ----------------SCEEEECTTSCSSCSEEECCCT-----TSCCCCEEEEEEECCCC-CCCEEEEEE----TTSEEE
T ss_pred ----------------CeEEEEeCCCCCCcceeccccC-----CCCCCceEEEEEEeccCCCCCEEEEEc----cCCeEE
Confidence 237899998876 33332210 01122455666 899999887765 345799
Q ss_pred EEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccc-----cCCeEEE
Q 004067 343 KFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PIT-----EGDWMVE 416 (776)
Q Consensus 343 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt-----~~~~~~~ 416 (776)
+||+.+++......+....... .|+|.. .++..+++...+| .|++|++..++.. .+. .+...+.
T Consensus 194 i~d~~~~~~~~~~~~~~~v~~~---~~~~~~-----~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~ 263 (357)
T 3i2n_A 194 LFDLRNMALRWETNIKNGVCSL---EFDRKD-----ISMNKLVATSLEG--KFHVFDMRTQHPTKGFASVSEKAHKSTVW 263 (357)
T ss_dssp EEETTTTEEEEEEECSSCEEEE---EESCSS-----SSCCEEEEEESTT--EEEEEEEEEEETTTEEEEEEEECCSSCEE
T ss_pred EEECccCceeeecCCCCceEEE---EcCCCC-----CCCCEEEEECCCC--eEEEEeCcCCCcccceeeeccCCCcCCEE
Confidence 9999998876555544332211 122210 0234566666677 7888887665432 121 4455566
Q ss_pred EEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCc--------------cccceeecCCC-CeEEEEEcCCcCEEEE
Q 004067 417 QIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT--------------LEAPVKLTNGK-GKHVAVLDHNMRNFVD 481 (776)
Q Consensus 417 ~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~--------------~~~~~~l~~~~-~~~~~~~spdg~~l~~ 481 (776)
.+. |+|+++.+++++..++ .+.+|.+.. ..... ...+..+..+. .+..++|+|||+.|++
T Consensus 264 ~~~-~~~~~~~~l~~~~~dg--~i~iwd~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 338 (357)
T 3i2n_A 264 QVR-HLPQNRELFLTAGGAG--GLHLWKYEY--PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCV 338 (357)
T ss_dssp EEE-EETTEEEEEEEEETTS--EEEEEEEEC--CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEE
T ss_pred EEE-ECCCCCcEEEEEeCCC--cEEEeecCC--CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEE
Confidence 654 9999986677766665 388998874 11100 01233344443 4678899999999987
Q ss_pred EeeCCCCCCEEEEEEcCCCc
Q 004067 482 FHDSLDSPPRILLCSLQDGS 501 (776)
Q Consensus 482 ~~~~~~~~~~i~~~~~~~~~ 501 (776)
..+... .|.+|+..+.+
T Consensus 339 s~~~d~---~i~iw~~~~~~ 355 (357)
T 3i2n_A 339 CSSFDQ---TVRVLIVTKLN 355 (357)
T ss_dssp EEETTS---EEEEEEECC--
T ss_pred EecCCC---cEEEEECCCcc
Confidence 665443 68988886543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-13 Score=143.05 Aligned_cols=273 Identities=11% Similarity=0.036 Sum_probs=176.7
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCc-
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINE- 201 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~- 201 (776)
..+....|+| ||++|+.. .++.|.+||..+++....+.... ..+...+|||||+.|+.... +.+.++++..+.
T Consensus 65 ~~V~~~~~s~---d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~-~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 65 NKVLCMDWCK---DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC-TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp SCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSS-SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred CeEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCcceEEecCC-CCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 3688999999 99999876 78899999998877653443333 34788999999999988764 467888775432
Q ss_pred ------eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 202 ------QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 202 ------~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
...+... ...+..+.|+||++.|+..+.+
T Consensus 141 ~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~l~t~s~D--------------------------- 175 (354)
T 2pbi_B 141 ENMAAKKKSVAMH------------------TNYLSACSFTNSDMQILTASGD--------------------------- 175 (354)
T ss_dssp CCSGGGCEEEEEC------------------SSCEEEEEECSSSSEEEEEETT---------------------------
T ss_pred ccccccceeeecc------------------CCcEEEEEEeCCCCEEEEEeCC---------------------------
Confidence 1111111 1124578899999999877643
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc--CCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH--GNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
..|.+||+++++....- ..+...+..+.|+| +|+.++..+ .+..|.+||+.++....
T Consensus 176 ---------~~v~lwd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~g~~l~sgs----~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 176 ---------GTCALWDVESGQLLQSF--------HGHGADVLCLDLAPSETGNTFVSGG----CDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp ---------SEEEEEETTTCCEEEEE--------ECCSSCEEEEEECCCSSCCEEEEEE----TTSCEEEEETTTCCEEE
T ss_pred ---------CcEEEEeCCCCeEEEEE--------cCCCCCeEEEEEEeCCCCCEEEEEe----CCCeEEEEECCCCcEEE
Confidence 35899999988764431 34556677788877 567777665 34569999999988654
Q ss_pred EEE-eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cccCC--eEEEEEEeecCCCcEEE
Q 004067 354 ILV-EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITEGD--WMVEQIVGVNEASGQVY 429 (776)
Q Consensus 354 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~--~~~~~~~~~s~dg~~i~ 429 (776)
... +...... -.|+| ++..+++...++ .|.+||+..+.... +.... ..+... .|+++|+.++
T Consensus 235 ~~~~h~~~v~~---v~~~p--------~~~~l~s~s~D~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~-~~s~~g~~l~ 300 (354)
T 2pbi_B 235 AFETHESDVNS---VRYYP--------SGDAFASGSDDA--TCRLYDLRADREVAIYSKESIIFGASSV-DFSLSGRLLF 300 (354)
T ss_dssp EECCCSSCEEE---EEECT--------TSSEEEEEETTS--CEEEEETTTTEEEEEECCTTCCSCEEEE-EECTTSSEEE
T ss_pred EecCCCCCeEE---EEEeC--------CCCEEEEEeCCC--eEEEEECCCCcEEEEEcCCCcccceeEE-EEeCCCCEEE
Confidence 433 2222111 11333 233556666677 88999987765433 32221 234444 4999999655
Q ss_pred EEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEE
Q 004067 430 FTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLC 495 (776)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~ 495 (776)
..+ .++. +.+|.+. .|. .+..+..+. .+..+.|||||+.|+..... ..|.+|
T Consensus 301 ~g~-~d~~--i~vwd~~---~~~----~~~~l~~h~~~v~~l~~spdg~~l~sgs~D----~~v~vW 353 (354)
T 2pbi_B 301 AGY-NDYT--INVWDVL---KGS----RVSILFGHENRVSTLRVSPDGTAFCSGSWD----HTLRVW 353 (354)
T ss_dssp EEE-TTSC--EEEEETT---TCS----EEEEECCCSSCEEEEEECTTSSCEEEEETT----SEEEEE
T ss_pred EEE-CCCc--EEEEECC---CCc----eEEEEECCCCcEEEEEECCCCCEEEEEcCC----CCEEec
Confidence 544 3332 6777664 333 445565554 46788999999988866432 245554
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-13 Score=145.71 Aligned_cols=286 Identities=9% Similarity=0.102 Sum_probs=181.9
Q ss_pred eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEE
Q 004067 127 VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQL 205 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~l 205 (776)
+..+.|++ +..++...++.|++||+.+++....+.......+..++|+|||+.|+.... +.|.+|++.+++....
T Consensus 96 ~~~~~~s~----~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 171 (401)
T 4aez_A 96 LNLLDWSN----LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT 171 (401)
T ss_dssp CBCEEECT----TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEEeecC----CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE
Confidence 34577775 456777789999999999998773333323345888999999999998874 5799999998875544
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
...... .+..+.| +++.|+..+.+ .
T Consensus 172 ~~~~~~-----------------~v~~~~~--~~~~l~~~~~d------------------------------------g 196 (401)
T 4aez_A 172 MAGHQA-----------------RVGCLSW--NRHVLSSGSRS------------------------------------G 196 (401)
T ss_dssp ECCCSS-----------------CEEEEEE--ETTEEEEEETT------------------------------------S
T ss_pred ecCCCC-----------------ceEEEEE--CCCEEEEEcCC------------------------------------C
Confidence 332211 1346677 56666665532 3
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCceee
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVN 364 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~ 364 (776)
.|.+||+..+....... ..+...+..+.|+|||+.++... .+..|.+||+.++....... +......
T Consensus 197 ~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~v~~- 264 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTL-------QGHSSEVCGLAWRSDGLQLASGG----NDNVVQIWDARSSIPKFTKTNHNAAVKA- 264 (401)
T ss_dssp EEEEEETTSSSCEEEEE-------ECCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTCSSEEEEECCCSSCCCE-
T ss_pred CEEEEecccCcceeeEE-------cCCCCCeeEEEEcCCCCEEEEEe----CCCeEEEccCCCCCccEEecCCcceEEE-
Confidence 58999998443322222 45667899999999999887766 34569999999877654433 2222111
Q ss_pred cccccccCCCCccccCCeEEEEec--cCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASE--KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~--~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
-.|+| ++..++++.. .+| .|++||+.+++..........+..+. |+++|+.++..+.... ..+.+
T Consensus 265 --~~~~p-------~~~~ll~~~~gs~d~--~i~i~d~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~g~~d-g~i~v 331 (401)
T 4aez_A 265 --VAWCP-------WQSNLLATGGGTMDK--QIHFWNAATGARVNTVDAGSQVTSLI-WSPHSKEIMSTHGFPD-NNLSI 331 (401)
T ss_dssp --EEECT-------TSTTEEEEECCTTTC--EEEEEETTTCCEEEEEECSSCEEEEE-ECSSSSEEEEEECTTT-CEEEE
T ss_pred --EEECC-------CCCCEEEEecCCCCC--EEEEEECCCCCEEEEEeCCCcEEEEE-ECCCCCeEEEEeecCC-CcEEE
Confidence 11222 2334555544 355 89999988776544334444566554 9999998877754222 34788
Q ss_pred EEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEe
Q 004067 443 YCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (776)
|.+.. +.. .....+..+. .+..+.|+|||+.|+..... ..|.+|+..+++.+..
T Consensus 332 ~~~~~---~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d----g~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 332 WSYSS---SGL--TKQVDIPAHDTRVLYSALSPDGRILSTAASD----ENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEET---TEE--EEEEEEECCSSCCCEEEECTTSSEEEEECTT----SEEEEEECCC------
T ss_pred EecCC---ccc--eeEEEecCCCCCEEEEEECCCCCEEEEEeCC----CcEEEEECCCCccccc
Confidence 88773 210 1222344433 46788999999988776432 4799999988775443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=141.70 Aligned_cols=281 Identities=14% Similarity=0.057 Sum_probs=180.7
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
..+..+.|+| ||++|+.. .++.|.+|++.+++....+..... .+..+.|+|||+.|+..+. +.|.+|++.+++.
T Consensus 24 ~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 24 KAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp SCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CcEEEEEECC---CCCEEEEeeCCCeEEEEeCCCcccchhhccCCC-ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence 4688999999 99999876 688999999988877634544433 4788999999999998875 5799999998876
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
......... .+..+.|+||++.|+....+
T Consensus 100 ~~~~~~~~~-----------------~v~~~~~~~~~~~l~s~~~d---------------------------------- 128 (312)
T 4ery_A 100 LKTLKGHSN-----------------YVFCCNFNPQSNLIVSGSFD---------------------------------- 128 (312)
T ss_dssp EEEEECCSS-----------------CEEEEEECSSSSEEEEEETT----------------------------------
T ss_pred EEEEcCCCC-----------------CEEEEEEcCCCCEEEEEeCC----------------------------------
Confidence 543332211 14467899999988876643
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCce
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
..|.+||+.+++....- ..+...+..+.|+|||+.++..+ .+..|.+||+.+++............
T Consensus 129 --~~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 129 --ESVRIWDVKTGKCLKTL--------PAHSDPVSAVHFNRDGSLIVSSS----YDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp --SCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred --CcEEEEECCCCEEEEEe--------cCCCCcEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceeeEEeccCCCc
Confidence 24799999987754331 34566788999999999777665 34469999998877543222111100
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEE-EEEeec-CCCcEEEEEEccCCCce
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVE-QIVGVN-EASGQVYFTGTLDGPLE 439 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~-~~~~~s-~dg~~i~~~~~~~~~~~ 439 (776)
. ..-.|+| ++.++++...+| .|.+||+..++. ..+..+..... -...++ ++++ +++.+..++.
T Consensus 195 ~-~~~~~~~--------~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~-- 260 (312)
T 4ery_A 195 V-SFVKFSP--------NGKYILAATLDN--TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNL-- 260 (312)
T ss_dssp E-EEEEECT--------TSSEEEEEETTT--EEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSC--
T ss_pred e-EEEEECC--------CCCEEEEEcCCC--eEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCE--
Confidence 0 0011222 233556666667 899999887654 33433321110 011234 4555 4555555543
Q ss_pred eeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+.+|.+. .+. ....+..+. .+..++++|+++.|+....+.+. .|.+|+.
T Consensus 261 i~vwd~~---~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~--~i~~W~~ 310 (312)
T 4ery_A 261 VYIWNLQ---TKE----IVQKLQGHTDVVISTACHPTENIIASAALENDK--TIKLWKS 310 (312)
T ss_dssp EEEEETT---TCC----EEEEECCCSSCEEEEEECSSSSEEEEEECTTTC--CEEEEEC
T ss_pred EEEEECC---Cch----hhhhhhccCCcEEEEeecCcCCceEEEEccCCc--cEEEecC
Confidence 6666654 232 455565544 36788999999988877543332 4666553
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-14 Score=154.14 Aligned_cols=276 Identities=9% Similarity=0.031 Sum_probs=158.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc------------eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK------------QELVFSPPDGGLDENNISPEEKLRRERLRERG 124 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~------------~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (776)
+..++|||||++||..+.+ ..|.+|++.+++ ...+..|... +..-. .....
T Consensus 31 V~~v~~s~~g~~la~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~~~~~------~~~~~ 93 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGDKG-----GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPE------FDYLK------SLEIE 93 (447)
T ss_dssp EEEEEECSSSSEEEEEETT-----SEEEEEEECC-----CCCCCCEEEEEEEECCCCE------EEGGG------TEEEC
T ss_pred EEEEEECCCCCEEEEEcCC-----CeEEEEEecCCCCCCcccccceeEeccccccccc------ccccc------ccccc
Confidence 4889999999999976542 469999998876 3334333200 00000 00000
Q ss_pred CCeeeEEEeecCCCc--eEEEEe-CCCcEEEEeCCCCccc---------------------------------------e
Q 004067 125 LGVTRYEWVKTSSKK--KIIMVP-LPDGIYFQDLSCSKPE---------------------------------------L 162 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg--~~l~~~-~~~~l~~~d~~~~~~~---------------------------------------~ 162 (776)
..+....|+| ++ ..|+.. .++.|.+||+.+++.. .
T Consensus 94 ~~V~~l~~~~---~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 94 EKINKIRWLP---QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp CCCCEEEECC---CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred CceEEEEEcC---CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 3588999999 87 556554 7889999998764431 0
Q ss_pred ecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCC-CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCC-C
Q 004067 163 KLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLI-NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDS-K 240 (776)
Q Consensus 163 ~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~-g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg-~ 240 (776)
.+.......+..+.|+|||+.|+...++.|.+|++.+ +....+...... ...+. ...+..+.|+||| +
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~--------~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPA--NMEEL--------TEVITAAEFHPNSCN 240 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCS--SGGGC--------CCCEEEEEECSSCTT
T ss_pred EeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccc--ccccc--------CcceEEEEECCCCCc
Confidence 1122223347889999999999988667899999984 333332211000 00111 1225688999999 7
Q ss_pred eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce-----EEEEcccCCC---CCCCC
Q 004067 241 FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV-----SWMDLQCGGT---DQNYD 312 (776)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~---~~~~~ 312 (776)
.|+..+.+ ..|.+||+.+++. ..+....... ....+
T Consensus 241 ~l~s~~~d------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (447)
T 3dw8_B 241 TFVYSSSK------------------------------------GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284 (447)
T ss_dssp EEEEEETT------------------------------------SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHH
T ss_pred EEEEEeCC------------------------------------CeEEEEECcCCccccceeeEeccCCCcccccccccc
Confidence 77766543 2478999988774 4442110000 00001
Q ss_pred cceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-CceEEEEEeccCceee------cccccccCCCCccccC-CeEE
Q 004067 313 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVILVEELDSWVN------LHDCFTPLDKGVTKYS-GGFI 384 (776)
Q Consensus 313 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~ 384 (776)
...+..++|+|||++|+... . ..|.+||+.+ +............... ....+. ...+.+++ +.++
T Consensus 285 ~~~v~~~~~s~~g~~l~~~~----~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~--~~~~~~s~~~~~l 357 (447)
T 3dw8_B 285 ISSISDVKFSHSGRYMMTRD----Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD--KFECCWNGSDSVV 357 (447)
T ss_dssp TTCEEEEEECTTSSEEEEEE----S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC--CCCEEECTTSSEE
T ss_pred CceEEEEEECCCCCEEEEee----C-CeEEEEeCCCCccccceeecccccccccccccccccccc--ceEEEECCCCCEE
Confidence 12789999999999887654 3 5699999986 5543322222110000 000000 00012323 3355
Q ss_pred EEeccCCceEEEEEeCCCceeec
Q 004067 385 WASEKTGFRHLYLHDINGTCLGP 407 (776)
Q Consensus 385 ~~s~~~g~~~l~~~~~~g~~~~~ 407 (776)
++...+| .|++|++.+++...
T Consensus 358 ~s~s~dg--~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 358 MTGSYNN--FFRMFDRNTKRDIT 378 (447)
T ss_dssp EEECSTT--EEEEEETTTCCEEE
T ss_pred EEeccCC--EEEEEEcCCCccee
Confidence 6666677 89999998876544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-13 Score=140.85 Aligned_cols=276 Identities=11% Similarity=0.012 Sum_probs=177.6
Q ss_pred CCeeeEEEeecCCCc-eEEEEe-CCCcEEEEeCCCCccc-----eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEe
Q 004067 125 LGVTRYEWVKTSSKK-KIIMVP-LPDGIYFQDLSCSKPE-----LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLN 196 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg-~~l~~~-~~~~l~~~d~~~~~~~-----~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~ 196 (776)
..+....|+| ++ +.|+.. .++.|.+|++.+.... ..+..+.. .+....|+|||+.|+..+. +.|.+||
T Consensus 18 ~~V~~l~~~~---~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 18 GWVTSLATSA---GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp SCEEEEEECS---SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEEEccC---CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-cEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4688899998 87 555544 7889999998754321 13333333 4778899999999988874 5799999
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+.+++..+....... .+..+.|+|+++.|+..+.+
T Consensus 94 ~~~~~~~~~~~~h~~-----------------~v~~~~~~~~~~~l~s~s~D---------------------------- 128 (319)
T 3frx_A 94 VATGETYQRFVGHKS-----------------DVMSVDIDKKASMIISGSRD---------------------------- 128 (319)
T ss_dssp TTTTEEEEEEECCSS-----------------CEEEEEECTTSCEEEEEETT----------------------------
T ss_pred CCCCCeeEEEccCCC-----------------cEEEEEEcCCCCEEEEEeCC----------------------------
Confidence 999876543332211 14578899999988877644
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe------EEEEEEeecCceEEEEEEECCCCc
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI------LTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~------~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
..|.+||+.+.....+ ..+...+..+.|+|+++ .++... .+..|.+||+.++.
T Consensus 129 --------~~i~vwd~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~~~~~~l~s~~----~d~~i~~wd~~~~~ 187 (319)
T 3frx_A 129 --------KTIKVWTIKGQCLATL---------LGHNDWVSQVRVVPNEKADDDSVTIISAG----NDKMVKAWNLNQFQ 187 (319)
T ss_dssp --------SCEEEEETTSCEEEEE---------CCCSSCEEEEEECCC------CCEEEEEE----TTSCEEEEETTTTE
T ss_pred --------CeEEEEECCCCeEEEE---------eccCCcEEEEEEccCCCCCCCccEEEEEe----CCCEEEEEECCcch
Confidence 2378999987766655 55677788999999643 555544 34569999998877
Q ss_pred eEEEE-EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEE
Q 004067 351 RKVIL-VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVY 429 (776)
Q Consensus 351 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~ 429 (776)
..... .+....... .|+| ++.++++...+| .|.+||+.+++..........+..+ .|+|+|..++
T Consensus 188 ~~~~~~~h~~~v~~~---~~sp--------~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~-~~sp~~~~la 253 (319)
T 3frx_A 188 IEADFIGHNSNINTL---TASP--------DGTLIASAGKDG--EIMLWNLAAKKAMYTLSAQDEVFSL-AFSPNRYWLA 253 (319)
T ss_dssp EEEEECCCCSCEEEE---EECT--------TSSEEEEEETTC--EEEEEETTTTEEEEEEECCSCEEEE-EECSSSSEEE
T ss_pred hheeecCCCCcEEEE---EEcC--------CCCEEEEEeCCC--eEEEEECCCCcEEEEecCCCcEEEE-EEcCCCCEEE
Confidence 54433 222222211 1333 334666666777 8999998877643333333445555 4999999766
Q ss_pred EEEccCCCceeeEEEEEeCCCCCCccccceeec---------CCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 430 FTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT---------NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~---------~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
.... . ...+|.++. +. ....+. ....+..++|||||++|+..... ..|.+|++.+
T Consensus 254 ~~~~-~---~i~v~~~~~---~~----~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D----g~i~vWd~~t 317 (319)
T 3frx_A 254 AATA-T---GIKVFSLDP---QY----LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD----NVIRVWQVMT 317 (319)
T ss_dssp EEET-T---EEEEEEETT---EE----EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT----SCEEEEEEEE
T ss_pred EEcC-C---CcEEEEeCc---Ce----eeeccCccccccccCcCcceeEEEECCCCCEEEEeecC----ceEEEEEEee
Confidence 5543 2 256666542 10 111221 12235678999999998866433 3588888654
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-15 Score=139.15 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=118.4
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
+.|.||++||.+++.. ..| ......+... ++.++.+|++. ....++.+.+..+.+.
T Consensus 16 ~~~~vv~~HG~~~~~~--~~~----~~~~~~~~~~---~~~v~~~~~~~---------------~~~~~~~~~~~~~~~~ 71 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSDD--EHW----QSHWERRFPH---WQRIRQREWYQ---------------ADLDRWVLAIRRELSV 71 (191)
T ss_dssp TTCEEEEECCTTCCCT--TSH----HHHHHHHCTT---SEECCCSCCSS---------------CCHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCch--hhH----HHHHHHhcCC---eEEEeccCCCC---------------cCHHHHHHHHHHHHHh
Confidence 3478999999876542 122 1122222223 35567776532 2255566666656554
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 712 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P 712 (776)
. + ++++++||||||.+++.++.++|++++++++.+|...... . .+. ...+.++++|
T Consensus 72 ~--~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~-------~---~~~-----------~~~~~~~~~P 127 (191)
T 3bdv_A 72 C--T-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRF-------E---IDD-----------RIQASPLSVP 127 (191)
T ss_dssp C--S-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGG-------T---CTT-----------TSCSSCCSSC
T ss_pred c--C-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccc-------c---Ccc-----------ccccccCCCC
Confidence 3 3 7999999999999999999999999999999998754321 0 000 0235677899
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC--CcHHHHHHHHHHHHHHh
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERT 775 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~~~fl~~~ 775 (776)
+|+++|++|..+|+..++.+.+.+ +.+++++++++|.+... ....+..+.+.+||++.
T Consensus 128 ~lii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 187 (191)
T 3bdv_A 128 TLTFASHNDPLMSFTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEIL 187 (191)
T ss_dssp EEEEECSSBTTBCHHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHHHHh
Confidence 999999999999999988888875 46899999999987332 13345559999998763
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=150.51 Aligned_cols=289 Identities=10% Similarity=-0.028 Sum_probs=183.5
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCc---cceecCCCC----------------------------------
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSK---PELKLSSSS---------------------------------- 168 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~---~~~~l~~~~---------------------------------- 168 (776)
.+....|+| ||+.|+...++.|++||+.+|+ ....+....
T Consensus 6 p~~~v~~s~---dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 6 PLQNLLTSR---DGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCEEEECS---SSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cEEEEEecC---CCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 466778999 9998888888999999998887 221111100
Q ss_pred -------------------CCCccCceeCCCCCEEEEEE--CCcEEEEecC--CCceeEEeeC-CCCCceecCCccccee
Q 004067 169 -------------------CSPVIDPHLSSDGTMIAFVR--DCELHVLNLL--INEQRQLTHG-ANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 169 -------------------~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~--~g~~~~lt~~-~~~~~~~~~~~~~~~~ 224 (776)
...+..++|||||+.|+++. ++.|.+|++. +++..+.... ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------- 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS------------- 149 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS-------------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC-------------
Confidence 01266789999999986665 3679999988 7765444321 110
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEE--EEc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW--MDL 302 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~--l~~ 302 (776)
..+..++|+|||+.|+....+ ..+++|++.+++... +..
T Consensus 150 ---~~v~~~~~sp~~~~l~~~~~~------------------------------------g~v~~~~~~~~~~~~~~~~~ 190 (450)
T 2vdu_B 150 ---KRPNAISIAEDDTTVIIADKF------------------------------------GDVYSIDINSIPEEKFTQEP 190 (450)
T ss_dssp ---SCEEEEEECTTSSEEEEEETT------------------------------------SEEEEEETTSCCCSSCCCCC
T ss_pred ---CCceEEEEcCCCCEEEEEeCC------------------------------------CcEEEEecCCccccccccee
Confidence 014578999999999877532 347888888766432 100
Q ss_pred ccCCCCCCCCcceEEEEEeccC---CeEEEEEEeecCceEEEEEEECCCCceEEE-E-EeccCceeecccccccCCCCcc
Q 004067 303 QCGGTDQNYDEEYLARVNWMHG---NILTAQVLNRSQTKLKVLKFDIKTGQRKVI-L-VEELDSWVNLHDCFTPLDKGVT 377 (776)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~SpD---g~~l~~~~~~~~~~~~l~~~d~~~g~~~~l-~-~~~~~~~~~~~~~~~~~~~~~~ 377 (776)
+..+...+..++|+|| +++|+..+ .+..|++||+.++..... . .+....+. +.
T Consensus 191 ------~~~h~~~v~~~~~sp~~~~~~~l~s~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~------------~~ 248 (450)
T 2vdu_B 191 ------ILGHVSMLTDVHLIKDSDGHQFIITSD----RDEHIKISHYPQCFIVDKWLFGHKHFVSS------------IC 248 (450)
T ss_dssp ------SEECSSCEEEEEEEECTTSCEEEEEEE----TTSCEEEEEESCTTCEEEECCCCSSCEEE------------EE
T ss_pred ------eecccCceEEEEEcCCCCCCcEEEEEc----CCCcEEEEECCCCceeeeeecCCCCceEE------------EE
Confidence 1345667899999999 88777665 345699999988875433 2 22222111 12
Q ss_pred ccCCeEEEEeccCCceEEEEEeCCCcee-ecccc-------------------------CCeEEEEEEeecCCCcEEEEE
Q 004067 378 KYSGGFIWASEKTGFRHLYLHDINGTCL-GPITE-------------------------GDWMVEQIVGVNEASGQVYFT 431 (776)
Q Consensus 378 ~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~-------------------------~~~~~~~~~~~s~dg~~i~~~ 431 (776)
+.++.++++...++ .|++||+.+++. ..+.. ....+..+ .|+++++.|++.
T Consensus 249 ~sd~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~l~~~ 325 (450)
T 2vdu_B 249 CGKDYLLLSAGGDD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI-IKSKNLPFVAFF 325 (450)
T ss_dssp ECSTTEEEEEESSS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE-EECSSSSEEEEE
T ss_pred ECCCCEEEEEeCCC--eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE-EEeCCCCEEEEE
Confidence 22334566666666 899999887653 33321 12334454 489999988887
Q ss_pred EccCCCceeeEEEE-EeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCC------EEEEEEcCCCc
Q 004067 432 GTLDGPLESHLYCA-KLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPP------RILLCSLQDGS 501 (776)
Q Consensus 432 ~~~~~~~~~~l~~~-~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~------~i~~~~~~~~~ 501 (776)
+..++ .+.+|.+ +. .+. .......+.....+..+.|+|++ +++...+...|. ++|.++..++.
T Consensus 326 ~~~d~--~i~iw~~~~~--~~~-~l~~~~~~~~~~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~~~~~ 395 (450)
T 2vdu_B 326 VEATK--CIIILEMSEK--QKG-DLALKQIITFPYNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNLNENS 395 (450)
T ss_dssp ETTCS--EEEEEEECSS--STT-CEEEEEEEECSSCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred ECCCC--eEEEEEeccC--CCC-ceeeccEeccCCceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence 75543 3788888 22 221 11134455555567788999953 555555555554 88888876665
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-13 Score=150.66 Aligned_cols=205 Identities=13% Similarity=0.033 Sum_probs=135.5
Q ss_pred CCceeEcC--CCCEEEEEeCCCCcCcceEEEEecCCC------ceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 004067 57 PTSIGFSP--DDNLITYLLSPDHSLSRKVFSFDPKTC------KQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVT 128 (776)
Q Consensus 57 ~~~~~~Sp--DG~~ia~~~~~~~~~~~~l~~~~~~~~------~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 128 (776)
+..++||| ||++|+..+.+ ..|.+|++.++ +.+.+.... .+...+.
T Consensus 67 v~~~~~sp~~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~---------------------~~~~~v~ 120 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDES-----GKVIVWGWTFDKESNSVEVNVKSEFQ---------------------VLAGPIS 120 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETT-----SEEEEEEEEEEGGGTEEEEEEEEEEE---------------------CCSSCEE
T ss_pred EEEEEECcCCCCCEEEEecCC-----CEEEEEeCCCCcccccccccccchhh---------------------cccccEE
Confidence 47889999 99999976552 46999999755 222222110 0124688
Q ss_pred eEEEeecCCCceEEEEeCC-----CcEEEEeCCCCccceecCCCCCCCccCceeCCCCC-EEEEEEC-CcEEEEecCCCc
Q 004067 129 RYEWVKTSSKKKIIMVPLP-----DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT-MIAFVRD-CELHVLNLLINE 201 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~~~-----~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~-~la~~~~-~~l~~~~l~~g~ 201 (776)
...|+| ||+.|+.... +.|++|| .++....+..... .+..+.|+|||+ .++.... +.|.+|++.+++
T Consensus 121 ~~~~s~---~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 194 (615)
T 1pgu_A 121 DISWDF---EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ-RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194 (615)
T ss_dssp EEEECT---TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSS-CEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred EEEEeC---CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCc-cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence 999999 9999998744 4788888 3333325554443 488899999998 5555554 579999998887
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCC-CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD-SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
.......... . ...+..+.|+|| |+.|+....+
T Consensus 195 ~~~~~~~~~~----~----------~~~v~~~~~~~~~~~~l~~~~~d-------------------------------- 228 (615)
T 1pgu_A 195 FSASDRTHHK----Q----------GSFVRDVEFSPDSGEFVITVGSD-------------------------------- 228 (615)
T ss_dssp EEEEECSSSC----T----------TCCEEEEEECSTTCCEEEEEETT--------------------------------
T ss_pred eeeeecccCC----C----------CceEEEEEECCCCCCEEEEEeCC--------------------------------
Confidence 6543322110 0 001457889999 9988876643
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
..|++||+.+++....-... ...+...+..+.|+ |++.++... .+..|.+||+.+++..
T Consensus 229 ----g~i~vwd~~~~~~~~~~~~~----~~~~~~~v~~~~~~-~~~~l~~~~----~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 229 ----RKISCFDGKSGEFLKYIEDD----QEPVQGGIFALSWL-DSQKFATVG----ADATIRVWDVTTSKCV 287 (615)
T ss_dssp ----CCEEEEETTTCCEEEECCBT----TBCCCSCEEEEEES-SSSEEEEEE----TTSEEEEEETTTTEEE
T ss_pred ----CeEEEEECCCCCEeEEeccc----ccccCCceEEEEEc-CCCEEEEEc----CCCcEEEEECCCCcEE
Confidence 24789999888765541000 00466778899999 888777665 3345778888766543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-13 Score=143.35 Aligned_cols=259 Identities=9% Similarity=0.038 Sum_probs=154.3
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecC--CCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPK--TCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
.+..++|||||++|++....+ ..|.+|+++ +++.+.+..... ...+..+.|+
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~s 92 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESAL----------------------PGSLTHISTD 92 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEEC----------------------SSCCSEEEEC
T ss_pred CCceEEECCCCCEEEEeecCC----CeEEEEEecCCCCceeecccccc----------------------CCCCcEEEEc
Confidence 458899999999998877643 357777776 777665543211 1246678999
Q ss_pred ecCCCceEEEEeC--CCcEEEEeCCCC---ccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCC-CceeEE
Q 004067 134 KTSSKKKIIMVPL--PDGIYFQDLSCS---KPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLI-NEQRQL 205 (776)
Q Consensus 134 p~~~dg~~l~~~~--~~~l~~~d~~~~---~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~-g~~~~l 205 (776)
| ||++|++.. ++.|++||+..+ +.. ....... .+..+.|||||+.|+... ++.|+++++.+ ++...+
T Consensus 93 ~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 93 H---QGQFVFVGSYNAGNVSVTRLEDGLPVGVV-DVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp T---TSSEEEEEETTTTEEEEEEEETTEEEEEE-EEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred C---CCCEEEEEecCCCeEEEEECCCCcccccc-ccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence 9 999998773 567999999433 222 2222222 367899999999987775 46799999987 765533
Q ss_pred e----eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 206 T----HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 206 t----~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
. ....+ .....+.|+|||+.|++.....
T Consensus 168 ~~~~~~~~~~----------------~~~~~~~~~pdg~~l~~~~~~~-------------------------------- 199 (343)
T 1ri6_A 168 DPAEVTTVEG----------------AGPRHMVFHPNEQYAYCVNELN-------------------------------- 199 (343)
T ss_dssp EEEEEECSTT----------------CCEEEEEECTTSSEEEEEETTT--------------------------------
T ss_pred cccccccCCC----------------CCcceEEECCCCCEEEEEeCCC--------------------------------
Confidence 2 11110 0133678999999887765221
Q ss_pred CCeEEEEEEEcC--CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC--CCceEEEEEe
Q 004067 282 NVKVRLGVVSAA--GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TGQRKVILVE 357 (776)
Q Consensus 282 ~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~--~g~~~~l~~~ 357 (776)
..+.+|+++ +++...+......+...........++|+|||+.|++.. .. ...|.+||++ ++..+.+..-
T Consensus 200 ---~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~-~~--~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 200 ---SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD-RT--ASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp ---TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE-TT--TTEEEEEEECTTSCCEEEEEEE
T ss_pred ---CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe-cC--CCEEEEEEEcCCCCceEEeeee
Confidence 246788874 455432221111110012234566799999999776553 22 3457788876 6665555432
Q ss_pred ccCceeecccccccCCCCccccC-CeEEEEe-ccCCceEEEEEeCCCceeeccc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYS-GGFIWAS-EKTGFRHLYLHDINGTCLGPIT 409 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s-~~~g~~~l~~~~~~g~~~~~lt 409 (776)
..... ...+.+++ +..++++ ..++.-.+|.++.++++.+.+.
T Consensus 274 ~~~~~----------~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 274 PTETQ----------PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp ECSSS----------CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred cCCCc----------cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 21111 01112222 3344444 4567556666677777655443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-13 Score=148.50 Aligned_cols=162 Identities=9% Similarity=0.041 Sum_probs=116.8
Q ss_pred CeeeEEEeecCCCceEE-EEe-CCCcEEEEeCC--CCccceecCC-CCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC
Q 004067 126 GVTRYEWVKTSSKKKII-MVP-LPDGIYFQDLS--CSKPELKLSS-SSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI 199 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l-~~~-~~~~l~~~d~~--~~~~~~~l~~-~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~ 199 (776)
.+..+.|+| ||++| +.. .++.|.+||+. +++....+.. .....+..+.|+|||+.|+.... +.++++++.+
T Consensus 104 ~v~~~~~s~---d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~ 180 (450)
T 2vdu_B 104 YIRNLRLTS---DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS 180 (450)
T ss_dssp CEEEEEECT---TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred ceEEEEEcC---CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence 588999999 99997 444 67889999998 7766534431 11224778999999999998875 5799999987
Q ss_pred CceeE-----EeeCCCCCceecCCcccceecccCCcceEEECCC---CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcc
Q 004067 200 NEQRQ-----LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD---SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE 271 (776)
Q Consensus 200 g~~~~-----lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (776)
+.... +... ...+..+.|+|| ++.|+....+
T Consensus 181 ~~~~~~~~~~~~~h------------------~~~v~~~~~sp~~~~~~~l~s~~~d----------------------- 219 (450)
T 2vdu_B 181 IPEEKFTQEPILGH------------------VSMLTDVHLIKDSDGHQFIITSDRD----------------------- 219 (450)
T ss_dssp CCCSSCCCCCSEEC------------------SSCEEEEEEEECTTSCEEEEEEETT-----------------------
T ss_pred cccccccceeeecc------------------cCceEEEEEcCCCCCCcEEEEEcCC-----------------------
Confidence 76432 1111 112557899999 8888776543
Q ss_pred eecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 272 DHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 272 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
..|++||+.+++...... ..+...+..++|+ ||++|+..+ .+..|.+||+.+++.
T Consensus 220 -------------~~i~vwd~~~~~~~~~~~-------~~h~~~v~~~~~s-d~~~l~s~~----~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 220 -------------EHIKISHYPQCFIVDKWL-------FGHKHFVSSICCG-KDYLLLSAG----GDDKIFAWDWKTGKN 274 (450)
T ss_dssp -------------SCEEEEEESCTTCEEEEC-------CCCSSCEEEEEEC-STTEEEEEE----SSSEEEEEETTTCCE
T ss_pred -------------CcEEEEECCCCceeeeee-------cCCCCceEEEEEC-CCCEEEEEe----CCCeEEEEECCCCcE
Confidence 247899998887543322 3566789999999 999888765 455799999999886
Q ss_pred EEEEE
Q 004067 352 KVILV 356 (776)
Q Consensus 352 ~~l~~ 356 (776)
.....
T Consensus 275 ~~~~~ 279 (450)
T 2vdu_B 275 LSTFD 279 (450)
T ss_dssp EEEEE
T ss_pred eeeec
Confidence 55443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=147.33 Aligned_cols=287 Identities=13% Similarity=0.117 Sum_probs=180.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+-.+. ...|.+||+.+++........ ...+....|+|
T Consensus 69 V~~~~~sp~~~~l~s~s~-----D~~v~iWd~~~~~~~~~~~~h-----------------------~~~v~~~~~s~-- 118 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQ-----DGRLIVWNALTSQKTHAIKLH-----------------------CPWVMECAFAP-- 118 (380)
T ss_dssp EEEEEECTTSSCEEEEET-----TSEEEEEETTTTEEEEEEECC-----------------------CTTCCCCEECT--
T ss_pred EEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCccceEEecC-----------------------CCCEEEEEECC--
Confidence 588999999999986554 247999999988764433211 13577889999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccc-------eecCCCCCCCccCceeCCCCCE-EEEEE-CCcEEEEecCCCceeEEe
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPE-------LKLSSSSCSPVIDPHLSSDGTM-IAFVR-DCELHVLNLLINEQRQLT 206 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~-------~~l~~~~~~~~~~~~~SpDg~~-la~~~-~~~l~~~~l~~g~~~~lt 206 (776)
||+.|+.. .++.+.+||+.+.... ..++.+. ..+....|+|++.. |+..+ ++.|.+||+.+++.....
T Consensus 119 -~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~-~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 119 -NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK-GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp -TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS-SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred -CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC-cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 99999886 6788999998764311 1233333 34778899998654 44443 356999999998765543
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
.... ..+.. ..+..+.|+| |++.|+..+.| .
T Consensus 197 ~~~~----~~~h~--------~~v~~~~~~~~~~~~l~sgs~D------------------------------------~ 228 (380)
T 3iz6_a 197 GSEF----PSGHT--------ADVLSLSINSLNANMFISGSCD------------------------------------T 228 (380)
T ss_dssp CCCS----SSSCC--------SCEEEEEECSSSCCEEEEEETT------------------------------------S
T ss_pred eccc----CCCCc--------cCeEEEEeecCCCCEEEEEECC------------------------------------C
Confidence 2110 00111 1134677876 77777766543 2
Q ss_pred EEEEEEcCC-Cc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 286 RLGVVSAAG-GP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 286 ~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
.|.+||+.. ++ ...+ ..+...+..++|+|||+.++..+ .+..|.+||+.++............-.
T Consensus 229 ~v~~wd~~~~~~~~~~~---------~~h~~~v~~v~~~p~~~~l~s~s----~D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 229 TVRLWDLRITSRAVRTY---------HGHEGDINSVKFFPDGQRFGTGS----DDGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp CEEEEETTTTCCCCEEE---------CCCSSCCCEEEECTTSSEEEEEC----SSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred eEEEEECCCCCcceEEE---------CCcCCCeEEEEEecCCCeEEEEc----CCCeEEEEECCCCcEEEEecccccccc
Confidence 478999873 33 2333 45677889999999999877665 455699999999876555432211000
Q ss_pred ecccccccCCCCcccc-CCeEEEEeccCCceEEEEEeCCCcee-ecc----ccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 364 NLHDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCL-GPI----TEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~g~~~-~~l----t~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
.. .+.-..++++ ++.++++...+| .|++||...++. ..+ ..+...+..+ .|+|||+.| ++++.++.
T Consensus 296 ~~----~~~v~~~~~s~~g~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l-~~s~dg~~l-~sgs~D~~ 367 (380)
T 3iz6_a 296 NE----LPIVTSVAFSISGRLLFAGYSNG--DCYVWDTLLAEMVLNLGTLQNSHEGRISCL-GLSSDGSAL-CTGSWDKN 367 (380)
T ss_dssp CS----SCSCSEEEECSSSSEEEEECTTS--CEEEEETTTCCEEEEECCSCSSCCCCCCEE-EECSSSSEE-EEECTTSC
T ss_pred cc----cCceEEEEECCCCCEEEEEECCC--CEEEEECCCCceEEEEecccCCCCCceEEE-EECCCCCEE-EEeeCCCC
Confidence 00 0000111222 344666666677 899999766543 233 2334445555 499999964 45555544
Q ss_pred ceeeEEEEE
Q 004067 438 LESHLYCAK 446 (776)
Q Consensus 438 ~~~~l~~~~ 446 (776)
+.+|.+.
T Consensus 368 --i~iW~~~ 374 (380)
T 3iz6_a 368 --LKIWAFS 374 (380)
T ss_dssp --EEEEECC
T ss_pred --EEEEecC
Confidence 7888765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-13 Score=143.88 Aligned_cols=270 Identities=11% Similarity=0.061 Sum_probs=150.2
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+..++|||||+ |++.....+ ...|++|++++++.+++..... .......+.|+|
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~--~~~v~~~~~~~g~~~~~~~~~~---------------------~~~~p~~~a~sp 95 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDD--EGGIAAWQIDGQTAHKLNTVVA---------------------PGTPPAYVAVDE 95 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETT--EEEEEEEEEETTEEEEEEEEEE---------------------ESCCCSEEEEET
T ss_pred CCcceEEEccCCe-EEEEEecCC--CceEEEEEecCCcEEEeeeeec---------------------CCCCCEEEEECC
Confidence 3458899999999 766655211 3579999999888766653100 123466789999
Q ss_pred cCCCceEEEEeC--CCcEEEEeCC-CCccce--ecCCCC--------CCCccCceeCCCCCEEEEEEC--CcEEEEecC-
Q 004067 135 TSSKKKIIMVPL--PDGIYFQDLS-CSKPEL--KLSSSS--------CSPVIDPHLSSDGTMIAFVRD--CELHVLNLL- 198 (776)
Q Consensus 135 ~~~dg~~l~~~~--~~~l~~~d~~-~~~~~~--~l~~~~--------~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~- 198 (776)
||++|++.. ++.|.+|++. ++.... .+.... ...+..+.|||||+ ++.... +.|++++++
T Consensus 96 ---dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 96 ---ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp ---TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECT
T ss_pred ---CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECC
Confidence 999998873 5679999985 343331 111110 01244589999999 544442 469999998
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
+|+...+...... .+. ....++|+|||+.|++.....
T Consensus 172 ~g~~~~~~~~~~~----~g~----------~p~~~~~spdg~~l~v~~~~~----------------------------- 208 (347)
T 3hfq_A 172 AGQLSEQSVLTME----AGF----------GPRHLVFSPDGQYAFLAGELS----------------------------- 208 (347)
T ss_dssp TSCEEEEEEEECC----TTC----------CEEEEEECTTSSEEEEEETTT-----------------------------
T ss_pred CCcEEEeeeEEcC----CCC----------CCceEEECCCCCEEEEEeCCC-----------------------------
Confidence 6665544321100 000 023678999999887654321
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-CCceEEEEEe
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQRKVILVE 357 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~ 357 (776)
....++.++..+++...+......+...........++|||||++|+.... . ...|.+|+++ +|..+.+..-
T Consensus 209 ----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~-~--~~~v~v~~~~~~g~~~~~~~~ 281 (347)
T 3hfq_A 209 ----SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR-G--YNTLAVFAVTADGHLTLIQQI 281 (347)
T ss_dssp ----TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE-T--TTEEEEEEECGGGCEEEEEEE
T ss_pred ----CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC-C--CCEEEEEEECCCCcEEEeEEE
Confidence 113333344435665443221111111112246788999999997765543 2 2347777775 3455544332
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT 409 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt 409 (776)
.........-.|+| +++.++.....++.-.+|.++.++++.+.+.
T Consensus 282 ~~~~~~~~~~~~sp-------dg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 282 STEGDFPRDFDLDP-------TEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp ECSSSCCCEEEECT-------TSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred ecCCCCcCeEEECC-------CCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 22100000111222 2223444444456556666687777666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=162.10 Aligned_cols=282 Identities=9% Similarity=0.023 Sum_probs=186.6
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
..+..+.|+| ||++|++. .++.|.+||+.+++....+..... .+..+.|||||+.|+.... +.|.+|++.+++.
T Consensus 14 ~~v~~i~~sp---~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 14 DRVKGIDFHP---TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp SCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CceEEEEECC---CCCEEEEEeCCCEEEEEECCCCceEEEEecCCC-cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 4688999999 99999987 577899999998877645554443 5889999999999999876 5799999998876
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
......... .+..+.|+|||+.|+....+
T Consensus 90 ~~~~~~~~~-----------------~v~~~~~s~~~~~l~~~~~d---------------------------------- 118 (814)
T 3mkq_A 90 VVDFEAHPD-----------------YIRSIAVHPTKPYVLSGSDD---------------------------------- 118 (814)
T ss_dssp EEEEECCSS-----------------CEEEEEECSSSSEEEEEETT----------------------------------
T ss_pred EEEEecCCC-----------------CEEEEEEeCCCCEEEEEcCC----------------------------------
Confidence 543332211 14578999999998876532
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCceEEEEEec--c
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE--L 359 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~ 359 (776)
..|.+||+.++....... ..+...+..++|+| |++.++..+ .+..|.+||+.++......... .
T Consensus 119 --g~i~vw~~~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~l~~~~----~dg~v~vwd~~~~~~~~~~~~~~~~ 185 (814)
T 3mkq_A 119 --LTVKLWNWENNWALEQTF-------EGHEHFVMCVAFNPKDPSTFASGC----LDRTVKVWSLGQSTPNFTLTTGQER 185 (814)
T ss_dssp --SEEEEEEGGGTSEEEEEE-------ECCSSCEEEEEEETTEEEEEEEEE----TTSEEEEEETTCSSCSEEEECCCTT
T ss_pred --CEEEEEECCCCceEEEEE-------cCCCCcEEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcceeEEecCCCC
Confidence 357899998773322222 35667789999999 777777665 3457999999877654433322 1
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
.... ..|.|.+ ++.++++...+| .|.+|+..+++ ...+..+...+..+. |+|+|+.++..+ .++.
T Consensus 186 ~v~~---~~~~~~~------~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~-~dg~- 251 (814)
T 3mkq_A 186 GVNY---VDYYPLP------DKPYMITASDDL--TIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPIIISGS-EDGT- 251 (814)
T ss_dssp CCCE---EEECCST------TCCEEEEECTTS--EEEEEETTTTEEEEEEECCSSCEEEEE-ECSSSSEEEEEE-TTSC-
T ss_pred CEEE---EEEEECC------CCCEEEEEeCCC--EEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCCEEEEEe-CCCe-
Confidence 1111 1122211 334666666777 89999987665 444555555566554 999999655544 3332
Q ss_pred eeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 439 ESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 439 ~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
+.+|.+. .+. ....+.... .+..++|+|+|+.+++...... .+.+++...
T Consensus 252 -v~vwd~~---~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 302 (814)
T 3mkq_A 252 -LKIWNSS---TYK----VEKTLNVGLERSWCIATHPTGRKNYIASGFDN---GFTVLSLGN 302 (814)
T ss_dssp -EEEEETT---TCS----EEEEECCSSSSEEEEEECTTCGGGEEEEEETT---EEEEEECSC
T ss_pred -EEEEECC---CCc----EEEEeecCCCcEEEEEEccCCCceEEEEEeCC---CEEEEEcCC
Confidence 6666543 232 344454443 4678899999986533333322 456666543
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=152.57 Aligned_cols=227 Identities=11% Similarity=0.040 Sum_probs=139.4
Q ss_pred cCCCCceEEEEEcCC-CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECC
Q 004067 519 LQLEPPDIVQIQAND-GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDN 596 (776)
Q Consensus 519 ~~~~~~~~~~~~~~d-g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~ 596 (776)
..+...+.+.+.+.. +..+.+++|.|++.. ..+++|+|+++||+..... ......+.+++ .+..|+.+++
T Consensus 8 ~~~~~~~~~~~~S~~~~~~~~~~vylP~~y~-~~~~yPvly~l~G~~~~~~-------~~~~~~~~l~~~~~~ivV~v~~ 79 (278)
T 2gzs_A 8 SVFYHFSATSFDSVDGTRHYRVWTAVPNTTA-PASGYPILYMLDGNAVMDR-------LDDELLKQLSEKTPPVIVAVGY 79 (278)
T ss_dssp CSSEEEEEEEEECTTSSCEEEEEEEEESSCC-CTTCEEEEEESSHHHHHHH-------CCHHHHHHHTTSCCCEEEEEEE
T ss_pred CCCCceEEEEEEcCCCCceEEEEEECCCCCC-CCCCCCEEEEeeChhHHHH-------HHHHHHHHhccCCCeEEEEEcC
Confidence 345667888898875 688999999998863 2368999888887533211 11112344554 6788888888
Q ss_pred CCCCCC-----chhhhhhh-h------h---ccCCccHHHHHHHH-----HHHHHcCCCCCCcEEEEeechHHHHHHHHH
Q 004067 597 RGTARR-----GLKFEASI-K------H---NCGRIDAEDQLTGA-----EWLIKQGLAKVGHIGLYGWSYGGYLSAITL 656 (776)
Q Consensus 597 rg~g~~-----~~~~~~~~-~------~---~~~~~~~~D~~~~i-----~~l~~~~~id~~~i~l~G~S~GG~~a~~~a 656 (776)
++.... +.++.... . . ........++...+ .++.++..++.++++|+||||||++|+.++
T Consensus 80 ~~~~~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~ 159 (278)
T 2gzs_A 80 QTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSW 159 (278)
T ss_dssp SSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHH
T ss_pred CCCCcCcccccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHH
Confidence 743211 11111110 0 0 00001122322222 233344557888999999999999999999
Q ss_pred hhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCcc--------ChHH
Q 004067 657 ARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENV--------HFRH 728 (776)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v--------~~~~ 728 (776)
.+ |+.|+++++.+|...|.... .+ .. ...... . ..-..|+++.+|+.|... +..+
T Consensus 160 ~~-p~~f~~~~~~s~~~~~~~~~-~~-~~-----------~~~~~~--~-~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~ 222 (278)
T 2gzs_A 160 LS-SSYFRSYYSASPSLGRGYDA-LL-SR-----------VTAVEP--L-QFCTKHLAIMEGSATQGDNRETHAVGVLSK 222 (278)
T ss_dssp HH-CSSCSEEEEESGGGSTTHHH-HH-HH-----------HHTSCT--T-TTTTCEEEEEECCC-----------CHHHH
T ss_pred hC-ccccCeEEEeCcchhcCcch-HH-HH-----------HHHhhc--c-CCCCCcEEEEecCccccccccchhhhhHHH
Confidence 99 99999999999875443100 00 00 000000 0 012358999999999764 3688
Q ss_pred HHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 729 TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 729 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+.++++.|++.|.++++.++|+++|.... ...+ ...++||.+
T Consensus 223 ~~~~~~~L~~~g~~~~~~~~~g~~H~~~~---~~~~-~~~l~fl~~ 264 (278)
T 2gzs_A 223 IHTTLTILKDKGVNAVFWDFPNLGHGPMF---NASF-RQALLDISG 264 (278)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCCHHHHH---HHHH-HHHHHHHTT
T ss_pred HHHHHHHHHcCCCeeEEEEcCCCCccchh---HHHH-HHHHHHHhh
Confidence 99999999999999999999999997532 2222 345557654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-13 Score=143.43 Aligned_cols=286 Identities=11% Similarity=-0.009 Sum_probs=181.2
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc-------eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK-------QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR 129 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~-------~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (776)
+..++|+| +.|+..+. + ..|++|++.+++ ...+..+. ..+..
T Consensus 19 i~~~~~~~--~~l~s~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~h~------------------------~~v~~ 67 (397)
T 1sq9_A 19 IFSVSACN--SFTVSCSG-D----GYLKVWDNKLLDNENPKDKSYSHFVHK------------------------SGLHH 67 (397)
T ss_dssp EEEEEECS--SEEEEEET-T----SEEEEEESBCCTTCCGGGGEEEEECCT------------------------TCEEE
T ss_pred eEEEEecC--CeEEEEcC-C----CEEEEEECCCcccccCCCcceEEecCC------------------------CcEEE
Confidence 47889999 67775544 2 479999999887 45555432 36889
Q ss_pred EEEeecCCC----c---eEEEEe-CCCcEEEEeCCCCcc-----ceecCCCC----CCCccCceeC----CCCCE-EEEE
Q 004067 130 YEWVKTSSK----K---KIIMVP-LPDGIYFQDLSCSKP-----ELKLSSSS----CSPVIDPHLS----SDGTM-IAFV 187 (776)
Q Consensus 130 ~~~sp~~~d----g---~~l~~~-~~~~l~~~d~~~~~~-----~~~l~~~~----~~~~~~~~~S----pDg~~-la~~ 187 (776)
..|+| + | +.|+.. .++.|++||+.+++. ...+.... ...+..+.|+ ||++. |+..
T Consensus 68 ~~~~~---~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 144 (397)
T 1sq9_A 68 VDVLQ---AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144 (397)
T ss_dssp EEEEE---EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred EEEec---ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence 99999 9 8 888875 688999999998884 32554442 2347889999 99999 7777
Q ss_pred EC-CcEEEEecCC------Ccee------EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCe
Q 004067 188 RD-CELHVLNLLI------NEQR------QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPR 254 (776)
Q Consensus 188 ~~-~~l~~~~l~~------g~~~------~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 254 (776)
.. +.|++|++.+ ++.. .+...-. ........+..+.|+||| .|+....+
T Consensus 145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~~~~~~~~~-~l~~~~~d------ 206 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE-----------SPMTPSQFATSVDISERG-LIATGFNN------ 206 (397)
T ss_dssp ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC-----------CSSSSCCCCCEEEECTTS-EEEEECTT------
T ss_pred eCCCcEEEEeCCccccccccceeeccCcceeeeeec-----------cccCCCCCceEEEECCCc-eEEEEeCC------
Confidence 64 5799999987 4332 2211000 000011125688999999 66654422
Q ss_pred EEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCC---cceEEEEEeccCCeEEEEE
Q 004067 255 FRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYD---EEYLARVNWMHGNILTAQV 331 (776)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~SpDg~~l~~~ 331 (776)
..|.+||+.+++....-.. ...+ ...+..+.|+|||+.|+..
T Consensus 207 ------------------------------g~i~i~d~~~~~~~~~~~~-----~~~h~~~~~~i~~i~~~~~~~~l~~~ 251 (397)
T 1sq9_A 207 ------------------------------GTVQISELSTLRPLYNFES-----QHSMINNSNSIRSVKFSPQGSLLAIA 251 (397)
T ss_dssp ------------------------------SEEEEEETTTTEEEEEEEC-----CC---CCCCCEEEEEECSSTTEEEEE
T ss_pred ------------------------------CcEEEEECCCCceeEEEec-----cccccccCCccceEEECCCCCEEEEE
Confidence 3589999998765433110 0114 6678999999999987766
Q ss_pred EeecCceEEEEEEECCCCceEEEEEe--------------ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEE
Q 004067 332 LNRSQTKLKVLKFDIKTGQRKVILVE--------------ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYL 397 (776)
Q Consensus 332 ~~~~~~~~~l~~~d~~~g~~~~l~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~ 397 (776)
...+ ....|.+||+.+++....... ...... -.|+| ++.++++...+| .|++
T Consensus 252 ~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~--------~~~~l~~~~~dg--~i~i 317 (397)
T 1sq9_A 252 HDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS---LSFND--------SGETLCSAGWDG--KLRF 317 (397)
T ss_dssp EEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE---EEECS--------SSSEEEEEETTS--EEEE
T ss_pred ecCC-CCceEEEEECCCCcccceeccCcccccccccccccCCcEEE---EEECC--------CCCEEEEEeCCC--eEEE
Confidence 5321 127899999998876544432 111111 11222 234666666677 8999
Q ss_pred EeCCCcee-eccc------cC---------------CeEEEEEEeecCCCc---------EEEEEEccCCCceeeEEEEE
Q 004067 398 HDINGTCL-GPIT------EG---------------DWMVEQIVGVNEASG---------QVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 398 ~~~~g~~~-~~lt------~~---------------~~~~~~~~~~s~dg~---------~i~~~~~~~~~~~~~l~~~~ 446 (776)
|++..++. ..+. .+ ...+..+. |+++|+ .+++++..++ .+.+|.++
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~-~~~~g~~~~~~~~~~~~l~s~~~dg--~i~iw~~~ 394 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK-FLKKGWRSGMGADLNESLCCVCLDR--SIRWFREA 394 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEE-EECTTTSBSTTCTTSCEEEEEETTT--EEEEEEEE
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEE-eccccccccccccccceEEEecCCC--cEEEEEcC
Confidence 99876654 4444 33 45566654 999983 3455555554 37888887
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-17 Score=167.75 Aligned_cols=216 Identities=12% Similarity=0.029 Sum_probs=130.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|..+++.... +.|+||++||.+++.. .|..++..|+ .||.|+++|+||+|.+.......
T Consensus 13 ~g~~~~~~~~g---------~~p~vv~lHG~~~~~~-------~~~~~~~~l~-~g~~v~~~D~~G~G~s~~~~~~~--- 72 (304)
T 3b12_A 13 GDVTINCVVGG---------SGPALLLLHGFPQNLH-------MWARVAPLLA-NEYTVVCADLRGYGGSSKPVGAP--- 72 (304)
Confidence 67667665432 2378999999876543 2334566777 79999999999999886531100
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-------------
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------------- 679 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------------- 679 (776)
........++.+.+..+++.. +.+++.++||||||.+++.+|.++|++++++|+.+|........
T Consensus 73 ~~~~~~~~~~~~~l~~~l~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 150 (304)
T 3b12_A 73 DHANYSFRAMASDQRELMRTL--GFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHW 150 (304)
Confidence 011122333444433333332 34589999999999999999999999999999988754321000
Q ss_pred ------------------cccccc-cc----CC----CCCCccc-----------------hhcC---C----hhhhhcc
Q 004067 680 ------------------TFYTEK-YM----GL----PSEDPVG-----------------YEYS---S----VMHHVHK 708 (776)
Q Consensus 680 ------------------~~~~~~-~~----~~----~~~~~~~-----------------~~~~---~----~~~~~~~ 708 (776)
..+... ++ .. +...... +... + ....+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (304)
T 3b12_A 151 YFLQQPAPYPEKVIGADPDTFYEGCLFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQ 230 (304)
Confidence 000000 00 00 0000000 0000 0 0001567
Q ss_pred CCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 709 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 709 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++|+|+++|++|..+++....+..+.+ ..+++++++ ++||.+ ..+.++++.+.+.+||++.
T Consensus 231 i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i-~~gH~~-~~e~p~~~~~~i~~fl~~~ 292 (304)
T 3b12_A 231 VQCPALVFSGSAGLMHSLFEMQVVWAPR---LANMRFASL-PGGHFF-VDRFPDDTARILREFLSDA 292 (304)
Confidence 8899999999999655433333333333 234677788 999986 5567888999999999764
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=155.76 Aligned_cols=218 Identities=11% Similarity=0.080 Sum_probs=136.7
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCC--CCcccccccccccchhhhHHHHhCCcEEEEECCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGG--PCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 599 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~--~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~ 599 (776)
...+...+.+.++ .+.++ +.+ ..|+||++||. .++.. .|..++..|+ .||.|+++|+||+
T Consensus 19 ~~~~~~~v~~~~~-~~~~~-~~~--------~~p~vv~lHG~G~~~~~~-------~~~~~~~~L~-~~~~vi~~D~~G~ 80 (292)
T 3l80_A 19 AALNKEMVNTLLG-PIYTC-HRE--------GNPCFVFLSGAGFFSTAD-------NFANIIDKLP-DSIGILTIDAPNS 80 (292)
T ss_dssp -CCEEEEECCTTS-CEEEE-EEC--------CSSEEEEECCSSSCCHHH-------HTHHHHTTSC-TTSEEEEECCTTS
T ss_pred hccCcceEEecCc-eEEEe-cCC--------CCCEEEEEcCCCCCcHHH-------HHHHHHHHHh-hcCeEEEEcCCCC
Confidence 3455666666544 46555 221 22899999963 22222 3344455565 6999999999999
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-- 677 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-- 677 (776)
|.+.... .....++++.+.+..+++.. ..+++.|+||||||.+++.++.++|++++++|+.+|......
T Consensus 81 G~S~~~~-------~~~~~~~~~~~~l~~~l~~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 151 (292)
T 3l80_A 81 GYSPVSN-------QANVGLRDWVNAILMIFEHF--KFQSYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRA 151 (292)
T ss_dssp TTSCCCC-------CTTCCHHHHHHHHHHHHHHS--CCSEEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCCCHHHHHH
T ss_pred CCCCCCC-------cccccHHHHHHHHHHHHHHh--CCCCeEEEEEchhHHHHHHHHHhCchheeeEEEECCCCcchhhh
Confidence 9886211 11234677777777776654 335899999999999999999999999999999884321000
Q ss_pred ----------------ccc----------c----cccc---------------ccCCCC-CCccchhcC---Chhhhhcc
Q 004067 678 ----------------YDT----------F----YTEK---------------YMGLPS-EDPVGYEYS---SVMHHVHK 708 (776)
Q Consensus 678 ----------------~~~----------~----~~~~---------------~~~~~~-~~~~~~~~~---~~~~~~~~ 708 (776)
... . +... +..... .....+... +....+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 231 (292)
T 3l80_A 152 GFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQFKQLWRGYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISE 231 (292)
T ss_dssp CTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTTTSTTCCSSCCCCGGGGCCCCCT
T ss_pred ccccccchhHHHHHHHHhccCchhhhHhhccccccCHHHHHHhHHHHHHHHHHHHhhhhccccchhhhhcchhhhhccCC
Confidence 000 0 0000 000000 000001100 11123445
Q ss_pred CCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 709 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 709 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++|+|+++|++|..+++. + .+.+. -...+ +++++++|.+ ..+.++++.+.+.+||+++
T Consensus 232 -~~P~lii~g~~D~~~~~~-~-~~~~~----~~~~~-~~~~~~gH~~-~~e~p~~~~~~i~~fl~~~ 289 (292)
T 3l80_A 232 -KIPSIVFSESFREKEYLE-S-EYLNK----HTQTK-LILCGQHHYL-HWSETNSILEKVEQLLSNH 289 (292)
T ss_dssp -TSCEEEEECGGGHHHHHT-S-TTCCC----CTTCE-EEECCSSSCH-HHHCHHHHHHHHHHHHHTC
T ss_pred -CCCEEEEEccCccccchH-H-HHhcc----CCCce-eeeCCCCCcc-hhhCHHHHHHHHHHHHHhc
Confidence 789999999999988877 4 44432 34556 8999999976 4567889999999999875
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-13 Score=141.60 Aligned_cols=245 Identities=9% Similarity=0.063 Sum_probs=144.9
Q ss_pred CeeeEEEeecCCCceEEEEeCC--CcEEEEeCC--CCccceecCC--CCCCCccCceeCCCCCEEEEEEC--CcEEEEec
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLP--DGIYFQDLS--CSKPELKLSS--SSCSPVIDPHLSSDGTMIAFVRD--CELHVLNL 197 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~--~~l~~~d~~--~~~~~~~l~~--~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l 197 (776)
.+..+.|+| ||++|++... +.|.+|+++ +++.+ .+.. ... ....++|||||+.|++... +.|+++++
T Consensus 39 ~~~~~~~sp---dg~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 39 QVQPMVVSP---DKRYLYVGVRPEFRVLAYRIAPDDGALT-FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CCCCEEECT---TSSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEECC---CCCEEEEeecCCCeEEEEEecCCCCcee-eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 566789999 9999988743 789998887 66644 2211 122 3677899999999888874 45999998
Q ss_pred CCCce---eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 198 LINEQ---RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 198 ~~g~~---~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
.+|.. .+...... ....++|+|||+.|+......
T Consensus 114 ~~~~~~~~~~~~~~~~------------------~~~~~~~s~dg~~l~~~~~~~------------------------- 150 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD------------------GCHSANISPDNRTLWVPALKQ------------------------- 150 (343)
T ss_dssp ETTEEEEEEEEECCCT------------------TBCCCEECTTSSEEEEEEGGG-------------------------
T ss_pred CCCccccccccccCCC------------------CceEEEECCCCCEEEEecCCC-------------------------
Confidence 54432 22221111 134678999999887654221
Q ss_pred CCCCCCCCCeEEEEEEEcCC-CceEEEE--cccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC--CCC
Q 004067 275 YPFAGASNVKVRLGVVSAAG-GPVSWMD--LQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI--KTG 349 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~-~~~~~l~--~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~--~~g 349 (776)
..|++||+.+ ++...+. ... .........+.|+|||+.+++... ....|.+|++ .++
T Consensus 151 ----------~~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 151 ----------DRICLFTVSDDGHLVAQDPAEVT-----TVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHG 212 (343)
T ss_dssp ----------TEEEEEEECTTSCEEEEEEEEEE-----CSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTS
T ss_pred ----------CEEEEEEecCCCceeeecccccc-----cCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCC
Confidence 3478899887 6655332 100 122235667999999997766642 2345888888 456
Q ss_pred ceEEEEEecc--CceeecccccccCCCCccccC-CeEEEEe-ccCCceEEEEEeCC--Cceeecc---ccCCeEEEEEEe
Q 004067 350 QRKVILVEEL--DSWVNLHDCFTPLDKGVTKYS-GGFIWAS-EKTGFRHLYLHDIN--GTCLGPI---TEGDWMVEQIVG 420 (776)
Q Consensus 350 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~s-~~~g~~~l~~~~~~--g~~~~~l---t~~~~~~~~~~~ 420 (776)
+.+.+..... ..+... . ....+.+++ ++.++++ ..++ .|++|+++ ++..+.+ ..+.. +..+ .
T Consensus 213 ~~~~~~~~~~~~~~~~~~---~--~~~~i~~s~dg~~l~v~~~~~~--~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~-~ 283 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDT---R--WAADIHITPDGRHLYACDRTAS--LITVFSVSEDGSVLSKEGFQPTETQ-PRGF-N 283 (343)
T ss_dssp CCEEEEEEECSCTTCCSC---C--CEEEEEECTTSSEEEEEETTTT--EEEEEEECTTSCCEEEEEEEECSSS-CCCE-E
T ss_pred cEEEEeeccccCcccccc---C--CccceEECCCCCEEEEEecCCC--EEEEEEEcCCCCceEEeeeecCCCc-cceE-E
Confidence 6544332210 010000 0 000112333 2344444 3455 78888876 4433332 22222 3344 4
Q ss_pred ecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 421 VNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 421 ~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
|++||+.||+....++ .+.+|.++.
T Consensus 284 ~s~dg~~l~~~~~~~~--~v~v~~~d~ 308 (343)
T 1ri6_A 284 VDHSGKYLIAAGQKSH--HISVYEIVG 308 (343)
T ss_dssp ECTTSSEEEEECTTTC--EEEEEEEET
T ss_pred ECCCCCEEEEecCCCC--eEEEEEEcC
Confidence 9999998888775544 388999986
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-12 Score=153.00 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=100.0
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+..++||| |++|+-.+.+ ..|.+||+.+++......+ ...+..+.|+|
T Consensus 60 ~V~~l~fsp-g~~L~S~s~D-----~~v~lWd~~~~~~~~~~~~------------------------~~~V~~v~~sp- 108 (902)
T 2oaj_A 60 AIKEMRFVK-GIYLVVINAK-----DTVYVLSLYSQKVLTTVFV------------------------PGKITSIDTDA- 108 (902)
T ss_dssp CEEEEEEET-TTEEEEEETT-----CEEEEEETTTCSEEEEEEC------------------------SSCEEEEECCT-
T ss_pred CEEEEEEcC-CCEEEEEECc-----CeEEEEECCCCcEEEEEcC------------------------CCCEEEEEECC-
Confidence 358899999 8888765542 4799999998876433322 13688999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccce-----------ecCCCCCCCccCceeCCCCC-EEEEEEC-CcEEEEecCCCc
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPEL-----------KLSSSSCSPVIDPHLSSDGT-MIAFVRD-CELHVLNLLINE 201 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~-----------~l~~~~~~~~~~~~~SpDg~-~la~~~~-~~l~~~~l~~g~ 201 (776)
||++|+.. .++.|.+||+.+++... .+... ...+..++|+|++. .|+.... +.+ +||+.+++
T Consensus 109 --~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h-~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~ 184 (902)
T 2oaj_A 109 --SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR-LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE 184 (902)
T ss_dssp --TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC-CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred --CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC-CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence 99999986 78899999999887530 11222 23478899999764 4444333 458 99999987
Q ss_pred eeEEeeCCCCCceecCCcc-cceecccCCcceEEECCCCCeEEEEEec
Q 004067 202 QRQLTHGANGNTVTHGLAE-YIAQEEMDRKTGYWWSLDSKFIAFTQVD 248 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wspDg~~l~~~~~~ 248 (776)
..+............+... -........+..++|+|||+.|+....|
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 6543221100000000000 0000111235689999999999877644
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-14 Score=152.56 Aligned_cols=251 Identities=11% Similarity=0.100 Sum_probs=157.0
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCC----C-ceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT----C-KQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~----~-~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
.+..++|||||++|+..+.. ..|.+|++.+ . ....+..+ ...+...
T Consensus 69 ~v~~~~~s~~~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~~~h------------------------~~~v~~~ 119 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDN-----GSLELYSTNEANNAINSMARFSNH------------------------SSSVKTV 119 (416)
T ss_dssp CEEEEEECSSSSCEEEEESS-----SCEEEECCSSTTSCCCEEEECCCS------------------------SSCCCEE
T ss_pred ceEEEEECCCCCeEEEEccC-----CeEEEeecccccccccchhhccCC------------------------ccceEEE
Confidence 35789999999999876552 3699999987 2 22333322 2368899
Q ss_pred EEeecCCC-ceEEEEe-CCCcEEEEeCCCCc------cceec--CCCCCCCccCceeCCC-CCEEEEEE-CCcEEEEecC
Q 004067 131 EWVKTSSK-KKIIMVP-LPDGIYFQDLSCSK------PELKL--SSSSCSPVIDPHLSSD-GTMIAFVR-DCELHVLNLL 198 (776)
Q Consensus 131 ~~sp~~~d-g~~l~~~-~~~~l~~~d~~~~~------~~~~l--~~~~~~~~~~~~~SpD-g~~la~~~-~~~l~~~~l~ 198 (776)
.|+| | ++.|+.. .++.|++||+.+++ ....+ .......+..+.|+|| +..|+... ++.|.+|++.
T Consensus 120 ~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 120 KFNA---KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp EECS---SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEcC---CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 9999 9 7777765 67899999999886 22122 1122234788999999 45555543 3579999999
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
+++.......... ..+. ...+..+.|+|||+.+++.....+.
T Consensus 197 ~~~~~~~~~~~~~---~~~~--------~~~v~~~~~~~~~~~~l~~~~~d~~--------------------------- 238 (416)
T 2pm9_A 197 AKKEVIHLSYTSP---NSGI--------KQQLSVVEWHPKNSTRVATATGSDN--------------------------- 238 (416)
T ss_dssp TTEEEEEECCCCC---SSCC--------CCCEEEEEECSSCTTEEEEEECCSS---------------------------
T ss_pred CCCcceEEecccc---cccc--------CCceEEEEECCCCCCEEEEEECCCC---------------------------
Confidence 8876544332210 0000 0114578999998644444322210
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCC-CCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN-YDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
...|++||+.+++..... +. .+...+..++|+| |+++|+... .+..|.+||+.+++......
T Consensus 239 -----~~~i~~~d~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~~l~s~~----~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 239 -----DPSILIWDLRNANTPLQT-------LNQGHQKGILSLDWCHQDEHLLLSSG----RDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp -----SCCCCEEETTSTTSCSBC-------CCSCCSSCEEEEEECSSCSSCEEEEE----SSSEEEEECSSSCCEEEEEE
T ss_pred -----CceEEEEeCCCCCCCcEE-------eecCccCceeEEEeCCCCCCeEEEEe----CCCCEEEeeCCCCccceeec
Confidence 014688998876321111 13 4667899999999 888777665 35569999999887654433
Q ss_pred e-ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 357 E-ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 357 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
. ....+. -.|+| ++..++++...+| .|.+|++....
T Consensus 303 ~~~~~v~~---~~~s~-------~~~~~l~s~~~d~--~i~iw~~~~~~ 339 (416)
T 2pm9_A 303 ARGNWCFK---TKFAP-------EAPDLFACASFDN--KIEVQTLQNLT 339 (416)
T ss_dssp CSSSCCCC---EEECT-------TCTTEEEECCSSS--EEEEEESCCCC
T ss_pred CCCCceEE---EEECC-------CCCCEEEEEecCC--cEEEEEccCCC
Confidence 2 222111 11222 1224677776777 88889887654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.60 E-value=9.3e-13 Score=138.82 Aligned_cols=264 Identities=14% Similarity=0.095 Sum_probs=149.9
Q ss_pred CCCceeEcCCCCEEEEEeCCC-CcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 56 APTSIGFSPDDNLITYLLSPD-HSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+..++|||||++|++.+... +.+.-.+|.++.++|+.+.+..... .+.....++.
T Consensus 51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-----------------------~~~~p~~~~~ 107 (361)
T 3scy_A 51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-----------------------MGADPCYLTT 107 (361)
T ss_dssp CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-----------------------SSSCEEEEEE
T ss_pred CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-----------------------CCCCcEEEEE
Confidence 457889999999998887742 1112344556666677766654211 1222334555
Q ss_pred cCCCceEEEEe--CCCcEEEEeCCCCccceecC-----CCCC--------CCccCceeCCCCCEEEEEEC--CcEEEEec
Q 004067 135 TSSKKKIIMVP--LPDGIYFQDLSCSKPELKLS-----SSSC--------SPVIDPHLSSDGTMIAFVRD--CELHVLNL 197 (776)
Q Consensus 135 ~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~-----~~~~--------~~~~~~~~SpDg~~la~~~~--~~l~~~~l 197 (776)
||++|++. .++.|.+|++........+. .+.. .....+.|||||+.|++... +.++++++
T Consensus 108 ---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 108 ---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp ---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 88988887 46679999987533220211 1100 01245899999999888764 45777776
Q ss_pred CCCc-------ee------EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCC
Q 004067 198 LINE-------QR------QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSS 264 (776)
Q Consensus 198 ~~g~-------~~------~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (776)
+... .. .+...... ....++|||||+.|++.....
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~spdg~~l~v~~~~~--------------- 232 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGS-----------------GPRHLIFNSDGKFAYLINEIG--------------- 232 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTC-----------------CEEEEEECTTSSEEEEEETTT---------------
T ss_pred cCCCCcccccceeecccccceecCCCC-----------------CCeEEEEcCCCCEEEEEcCCC---------------
Confidence 6433 11 11111110 134688999999887655211
Q ss_pred CCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeec-CceEEEEE
Q 004067 265 VGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS-QTKLKVLK 343 (776)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~l~~ 343 (776)
..|.+|++++++...+..... ..........++|||||++|+.. ++. .+.-.||.
T Consensus 233 --------------------~~v~v~~~~~g~~~~~~~~~~---~~~~~~~~~~i~~spdg~~l~v~-~~~~~~~i~v~~ 288 (361)
T 3scy_A 233 --------------------GTVIAFRYADGMLDEIQTVAA---DTVNAQGSGDIHLSPDGKYLYAS-NRLKADGVAIFK 288 (361)
T ss_dssp --------------------CEEEEEEEETTEEEEEEEEES---CSSCCCCEEEEEECTTSSEEEEE-ECSSSCEEEEEE
T ss_pred --------------------CeEEEEEecCCceEEeEEEec---CCCCCCCcccEEECCCCCEEEEE-CCCCCCEEEEEE
Confidence 347888888877654432111 12222345789999999977654 333 34444555
Q ss_pred EECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccc
Q 004067 344 FDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT 409 (776)
Q Consensus 344 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt 409 (776)
++.++|..+.+.......+ ...-.|+| +++.+++....++.-.+|.+|+++++.+.+.
T Consensus 289 ~~~~~g~~~~~~~~~~g~~-~~~~~~sp-------dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 289 VDETNGTLTKVGYQLTGIH-PRNFIITP-------NGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp ECTTTCCEEEEEEEECSSC-CCEEEECT-------TSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred EcCCCCcEEEeeEecCCCC-CceEEECC-------CCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 5556787766644332111 00111222 2223444444567667777888888766654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-13 Score=144.49 Aligned_cols=279 Identities=9% Similarity=0.016 Sum_probs=174.8
Q ss_pred CCeeeEEEeecCCCc-eEEEEe-CCCcEEEEeCCCCccceecCC-CCCCCccCceeCC-CCCEEEEEEC-CcEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKK-KIIMVP-LPDGIYFQDLSCSKPELKLSS-SSCSPVIDPHLSS-DGTMIAFVRD-CELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg-~~l~~~-~~~~l~~~d~~~~~~~~~l~~-~~~~~~~~~~~Sp-Dg~~la~~~~-~~l~~~~l~~ 199 (776)
..+..+.|+| || +.|+.. .++.|.+||+.+++....+.. .....+..+.|+| |++.|+..+. +.|.+|++.+
T Consensus 74 ~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 74 RRVTSLEWHP---THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp SCEEEEEECS---SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred CCEEEEEECC---CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence 4688999999 99 777766 678999999998877633331 2333588899999 6677776664 5799999997
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+..+.+...... . ..+..+.|+||++.|+....+
T Consensus 151 ~~~~~~~~~~~~-------~--------~~v~~~~~~~~~~~l~~~~~d------------------------------- 184 (383)
T 3ei3_B 151 SVIQVFAKTDSW-------D--------YWYCCVDVSVSRQMLATGDST------------------------------- 184 (383)
T ss_dssp CEEEEEECCCCS-------S--------CCEEEEEEETTTTEEEEEETT-------------------------------
T ss_pred CceEEEeccCCC-------C--------CCeEEEEECCCCCEEEEECCC-------------------------------
Confidence 666655433211 0 114578899999988876533
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCC----CceEEE
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKT----GQRKVI 354 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~----g~~~~l 354 (776)
..|++||+.+.....+ ..+...+..++|+|+++ .++..+ .+..|.+||+.+ +.....
T Consensus 185 -----~~i~i~d~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~ 246 (383)
T 3ei3_B 185 -----GRLLLLGLDGHEIFKE---------KLHKAKVTHAEFNPRCDWLMATSS----VDATVKLWDLRNIKDKNSYIAE 246 (383)
T ss_dssp -----SEEEEEETTSCEEEEE---------ECSSSCEEEEEECSSCTTEEEEEE----TTSEEEEEEGGGCCSTTCEEEE
T ss_pred -----CCEEEEECCCCEEEEe---------ccCCCcEEEEEECCCCCCEEEEEe----CCCEEEEEeCCCCCcccceEEE
Confidence 3589999976655555 44667899999999998 666554 355799999987 444444
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCC-------eEEEEEEeecCCCc
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGD-------WMVEQIVGVNEASG 426 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~-------~~~~~~~~~s~dg~ 426 (776)
..+....... .|+| .++.++++...+| .|++||+..++. ..+..+. ..+. ..|+|++.
T Consensus 247 ~~~~~~v~~~---~~s~-------~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~ 312 (383)
T 3ei3_B 247 MPHEKPVNAA---YFNP-------TDSTKLLTTDQRN--EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK--ATWHPMYD 312 (383)
T ss_dssp EECSSCEEEE---EECT-------TTSCEEEEEESSS--EEEEEETTBTTSCSEEEECCBCCCTTSCCCC--CEECSSSS
T ss_pred ecCCCceEEE---EEcC-------CCCCEEEEEcCCC--cEEEEECCCCccccccccccccccccccceE--EeccCCCC
Confidence 4443332211 1222 0233555666666 899999876542 2232111 0111 12444444
Q ss_pred EEEE--------EEccCCCceeeEEEEEeCCCCCCccccceeecCC--CC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEE
Q 004067 427 QVYF--------TGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG--KG-KHVAVLDHNMRNFVDFHDSLDSPPRILLC 495 (776)
Q Consensus 427 ~i~~--------~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~--~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~ 495 (776)
.+.+ ++..++ .+.+|.+. .+. .+..+... .+ +..+.|+|||+.|+.. + + ..|.+|
T Consensus 313 ~~~~~~s~dg~~s~s~d~--~i~iwd~~---~~~----~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s--d--~~i~iw 378 (383)
T 3ei3_B 313 LIVAGRYPDDQLLLNDKR--TIDIYDAN---SGG----LVHQLRDPNAAGIISLNKFSPTGDVLASG-M--G--FNILIW 378 (383)
T ss_dssp EEEEECBCCTTTCTTCCC--CEEEEETT---TCC----EEEEECBTTBCSCCCEEEECTTSSEEEEE-E--T--TEEEEE
T ss_pred ceEEEecCCcccccCCCC--eEEEEecC---CCc----eeeeecCCCCCceEEEEEEecCccEEEEe-c--C--CcEEEE
Confidence 3332 222333 36666554 343 45566542 23 3455999999988777 3 2 479988
Q ss_pred EcC
Q 004067 496 SLQ 498 (776)
Q Consensus 496 ~~~ 498 (776)
++.
T Consensus 379 ~~~ 381 (383)
T 3ei3_B 379 NRE 381 (383)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.7e-13 Score=142.65 Aligned_cols=283 Identities=8% Similarity=0.031 Sum_probs=181.0
Q ss_pred eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCC-CCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE
Q 004067 127 VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSS-SSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ 204 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~ 204 (776)
..-+.||+ ++ .|++..++.|++||+.+|+....+.. .....+..++|||||+.||..+. +.|.+|++.+++...
T Consensus 108 ~~~l~wS~---~n-~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 108 LNLVDWSS---GN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp CBCEEECT---TS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ceeEEECC---CC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 34578998 64 78899999999999999987633332 22234788999999999998775 579999999987654
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
....... .-..+++|++.|+....+
T Consensus 184 ~~~~h~~-------------------~v~~~s~~~~~l~sgs~d------------------------------------ 208 (420)
T 4gga_A 184 NMTSHSA-------------------RVGSLSWNSYILSSGSRS------------------------------------ 208 (420)
T ss_dssp EECCCSS-------------------CEEEEEEETTEEEEEETT------------------------------------
T ss_pred EEeCCCC-------------------ceEEEeeCCCEEEEEeCC------------------------------------
Confidence 4332211 122345577777655432
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-----EEEEecc
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-----VILVEEL 359 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-----~l~~~~~ 359 (776)
..+.+||..........+ ..+...+..+.|+|+|+.++... .+..+.+|+..+++.. ....+..
T Consensus 209 ~~i~~~d~~~~~~~~~~~-------~~h~~~~~~~~~~~~g~~l~s~~----~D~~v~i~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 4gga_A 209 GHIHHHDVRVAEHHVATL-------SGHSQEVCGLRWAPDGRHLASGG----NDNLVNVWPSAPGEGGWVPLQTFTQHQG 277 (420)
T ss_dssp SEEEEEETTSSSCEEEEE-------ECCSSCEEEEEECTTSSEEEEEE----TTSCEEEEESSCCSSCSCCSEEECCCSS
T ss_pred CceeEeeecccceeeEEe-------cccccceeeeeecCCCCeeeeee----ccccceEEeeccccccceeeeeecccCC
Confidence 346788877655443332 35666788899999999887765 3456889998876531 2222221
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
.... -.|.| .+..++++........|.+||+.+++..........+.... |+++++.++..+.... ..
T Consensus 278 ~V~~---~~~~p-------~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~-~~~~~~~lv~~sg~~d-~~ 345 (420)
T 4gga_A 278 AVKA---VAWCP-------WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHGFAQ-NQ 345 (420)
T ss_dssp CEEE---EEECT-------TCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEE-EETTTTEEEEEECTTT-CC
T ss_pred ceee---eeeCC-------CcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeee-ecCCCCeEEEEEecCC-CE
Confidence 1111 11222 23345554433223389999998877554444444555554 8999998887765322 23
Q ss_pred eeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
+.||.+. .+. .+..|..+. .+..++|||||++|+... .+ ..|.+|++.+...
T Consensus 346 I~iwd~~---~~~----~v~~l~gH~~~V~~l~~spdg~~l~S~s-~D---~tvriWdv~~~~~ 398 (420)
T 4gga_A 346 LVIWKYP---TMA----KVAELKGHTSRVLSLTMSPDGATVASAA-AD---ETLRLWRCFELDP 398 (420)
T ss_dssp EEEEETT---TCC----EEEEECCCSSCEEEEEECTTSSCEEEEE-TT---TEEEEECCSCSSC
T ss_pred EEEEECC---CCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-cC---CeEEEEECCCCCc
Confidence 6676654 343 566677655 477889999999887654 33 3588888765443
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=145.59 Aligned_cols=223 Identities=11% Similarity=0.053 Sum_probs=133.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+...+.. +|..+++.... ..|.||++||.+++.. .|......|+ .+|.|+++|+||+|.|.
T Consensus 5 ~~~~~~~~-~~~~~~~~~~g---------~g~~~vllHG~~~~~~-------~w~~~~~~l~-~~~~vi~~Dl~G~G~s~ 66 (291)
T 3qyj_A 5 FEQTIVDT-TEARINLVKAG---------HGAPLLLLHGYPQTHV-------MWHKIAPLLA-NNFTVVATDLRGYGDSS 66 (291)
T ss_dssp CEEEEEEC-SSCEEEEEEEC---------CSSEEEEECCTTCCGG-------GGTTTHHHHT-TTSEEEEECCTTSTTSC
T ss_pred cceeEEec-CCeEEEEEEcC---------CCCeEEEECCCCCCHH-------HHHHHHHHHh-CCCEEEEEcCCCCCCCC
Confidence 34445554 78888887543 1257899999877644 2334456664 58999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc----
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---- 679 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~---- 679 (776)
....... ...+..+++...+..+.+.. ..+++.++||||||.+++.++.++|++++++++.++......+.
T Consensus 67 ~~~~~~~---~~~~~~~~~~~~~~~~~~~l--~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~ 141 (291)
T 3qyj_A 67 RPASVPH---HINYSKRVMAQDQVEVMSKL--GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKMYRTTDQ 141 (291)
T ss_dssp CCCCCGG---GGGGSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCHHHHHHTCCH
T ss_pred CCCCCcc---ccccCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCCCcchhhhcchh
Confidence 4321110 01123444444444444332 33589999999999999999999999999999876532110000
Q ss_pred ----c-----------------------ccccccc---CCC--CCCcc--------------------chhcCC------
Q 004067 680 ----T-----------------------FYTEKYM---GLP--SEDPV--------------------GYEYSS------ 701 (776)
Q Consensus 680 ----~-----------------------~~~~~~~---~~~--~~~~~--------------------~~~~~~------ 701 (776)
. .+....+ ... ....+ .|....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (291)
T 3qyj_A 142 EFATAYYHWFFLIQPDNLPETLIGANPEYYLRKCLEKWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDYRAAATIDLEH 221 (291)
T ss_dssp HHHHHTTHHHHTTCSTTHHHHHHHTCHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhHHHHHHHHhccCCCchHHHHcCCHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhcCCCcchhHHHHHHcccccchhh
Confidence 0 0000000 000 00000 000000
Q ss_pred -hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 702 -VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 702 -~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
......++++|+|+++|++|...+... ..+.+.+...++...+++ +||.+ ..+.++++.+.+.+||.+
T Consensus 222 ~~~~~~~~i~~P~Lvi~G~~D~~~~~~~---~~~~~~~~~~~~~~~~~~-~GH~~-~~E~P~~v~~~i~~fL~~ 290 (291)
T 3qyj_A 222 DELDMKQKISCPVLVLWGEKGIIGRKYD---VLATWRERAIDVSGQSLP-CGHFL-PEEAPEETYQAIYNFLTH 290 (291)
T ss_dssp HHTTTTCCBCSCEEEEEETTSSHHHHSC---HHHHHHTTBSSEEEEEES-SSSCH-HHHSHHHHHHHHHHHHHC
T ss_pred cchhcCCccccceEEEecccccccchhh---HHHHHHhhcCCcceeecc-CCCCc-hhhCHHHHHHHHHHHHhc
Confidence 011245788999999999996543211 112222333567777886 89966 778899999999999974
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-14 Score=147.68 Aligned_cols=222 Identities=10% Similarity=-0.014 Sum_probs=145.2
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhC---------CcEEEEEC
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK---------GILVWKLD 595 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~---------G~~v~~~d 595 (776)
..+.... +|..+++..+.+.. +..|.||++||.+++.. .|..++..|++. ||.|+++|
T Consensus 69 ~~~~~~i-~g~~i~~~~~~~~~-----~~~~plll~HG~~~s~~-------~~~~~~~~L~~~~~~~~~~~~~~~vi~~d 135 (388)
T 4i19_A 69 PQFTTEI-DGATIHFLHVRSPE-----PDATPMVITHGWPGTPV-------EFLDIIGPLTDPRAHGGDPADAFHLVIPS 135 (388)
T ss_dssp CEEEEEE-TTEEEEEEEECCSS-----TTCEEEEEECCTTCCGG-------GGHHHHHHHHCGGGGTSCGGGCEEEEEEC
T ss_pred CcEEEEE-CCeEEEEEEccCCC-----CCCCeEEEECCCCCCHH-------HHHHHHHHHhCcccccCCCCCCeEEEEEc
Confidence 3344443 89999998887654 24578999999887754 344557777775 99999999
Q ss_pred CCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 596 NRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 596 ~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
+||+|.|..... ......++...+..+.++. ..++++++||||||.+++.+|.++|+.++++++.+|....
T Consensus 136 l~G~G~S~~~~~-------~~~~~~~~a~~~~~l~~~l--g~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 206 (388)
T 4i19_A 136 LPGFGLSGPLKS-------AGWELGRIAMAWSKLMASL--GYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQTNL 206 (388)
T ss_dssp CTTSGGGCCCSS-------CCCCHHHHHHHHHHHHHHT--TCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCCCB
T ss_pred CCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHc--CCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCCCC
Confidence 999998864321 1234667777777666653 3458999999999999999999999999999998864321
Q ss_pred cc-------c-----------cccc--------------------------------ccccc--CCCCC------Cc---
Q 004067 676 DG-------Y-----------DTFY--------------------------------TEKYM--GLPSE------DP--- 694 (776)
Q Consensus 676 ~~-------~-----------~~~~--------------------------------~~~~~--~~~~~------~~--- 694 (776)
.. + ..++ .+++. ..+.. ..
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~dsp~gl~a~i~ek~~~w~~~~~~~~~~~~~d~l 286 (388)
T 4i19_A 207 SGEPGELETLSDADKARLAVSERFLDDLSGPMKMQSTRPHTIGYMLNDSPVAQLAYLLEMFKHWAQTENVPEDAVDRDLM 286 (388)
T ss_dssp CCCGGGGGGCCHHHHHHHHTHHHHHHHTCHHHHHHTTCHHHHHHHHHTCHHHHHHHHHHHHHHTSCCSSSGGGTSCHHHH
T ss_pred CCcccccccCCHHHHHHHHHHHHHHHcCChHHHHhcCCchhhhhHhhCCHHHHHHHHHHHHHHhcCCCCCcccCCCHHHH
Confidence 10 0 0000 00000 00000 00
Q ss_pred -----------------cchhcCC-------hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecC
Q 004067 695 -----------------VGYEYSS-------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 750 (776)
Q Consensus 695 -----------------~~~~~~~-------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 750 (776)
..|.+.. ......++++|+++++|.+|...++... .+.+ ....+++.++++
T Consensus 287 l~~~~~y~~t~~~~~s~~~y~e~~~~~~~~~~~~~~~~i~vP~~v~~g~~D~~~~p~~~---~~~~--~~~~~~~~~~~~ 361 (388)
T 4i19_A 287 LTHISLFWFTATGGSAAQAHYELKPFLPITSLIGRSPTLDVPMGVAVYPGALFQPVRSL---AERD--FKQIVHWAELDR 361 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTGGGCTTTCCBCCCCCBCSCEEEEECTBCSSCCCHHH---HHHH--BTTEEEEEECSS
T ss_pred HHHHHHHHhcCCchhHHHHHHHhhcccccccccccCCCCCCCEEEEeCCcccccccHHH---HHHh--CCCeEEEEECCC
Confidence 0000000 0003345789999999999966555422 2222 112367888999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 751 ERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 751 ~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+||.. ..+.++.+.+.+.+||++
T Consensus 362 gGHf~-~~E~Pe~~~~~l~~fl~~ 384 (388)
T 4i19_A 362 GGHFS-AMEEPDLFVDDLRTFNRT 384 (388)
T ss_dssp CBSSH-HHHCHHHHHHHHHHHHHH
T ss_pred CcCcc-chhcHHHHHHHHHHHHHH
Confidence 99976 678899999999999975
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-13 Score=140.26 Aligned_cols=280 Identities=13% Similarity=0.046 Sum_probs=153.1
Q ss_pred EEEEeCCCCccceecCC-CCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCCccccee
Q 004067 150 IYFQDLSCSKPELKLSS-SSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 150 l~~~d~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~ 224 (776)
+|.+|.++++.+ .+.. ........++|||||+ |+++.. +.|+++++++|+.+++......
T Consensus 20 v~~~d~~tg~~~-~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~------------- 84 (347)
T 3hfq_A 20 QGTLDTTAKTLT-NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAP------------- 84 (347)
T ss_dssp EEEEETTTTEEE-EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEE-------------
T ss_pred EEEEcCCCCeEE-EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecC-------------
Confidence 556666677665 3221 1112366789999999 666654 4799999998887766541100
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC-CCceEEEEcc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA-GGPVSWMDLQ 303 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~l~~~ 303 (776)
......++|+|||+.|++..... ..+.+|+++ ++....+...
T Consensus 85 --~~~p~~~a~spdg~~l~~~~~~~-----------------------------------~~v~v~~~~~~g~~~~~~~~ 127 (347)
T 3hfq_A 85 --GTPPAYVAVDEARQLVYSANYHK-----------------------------------GTAEVMKIAADGALTLTDTV 127 (347)
T ss_dssp --SCCCSEEEEETTTTEEEEEETTT-----------------------------------TEEEEEEECTTSCEEEEEEE
T ss_pred --CCCCEEEEECCCCCEEEEEeCCC-----------------------------------CEEEEEEeCCCCCeeeccee
Confidence 00134688999999888765322 236677774 4444333221
Q ss_pred cC---CCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-CCceEEEEEeccC-ceeecccccccCCCCccc
Q 004067 304 CG---GTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQRKVILVEELD-SWVNLHDCFTPLDKGVTK 378 (776)
Q Consensus 304 ~~---~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 378 (776)
.. .+........+..++|||||+ ++.. +.. ...|++|+++ +|....+...... ......-.|+|
T Consensus 128 ~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~~~--~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp------- 196 (347)
T 3hfq_A 128 QHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-DLG--SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP------- 196 (347)
T ss_dssp ECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-ETT--TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-------
T ss_pred ecCCCCCCccccCCCceEEEECCCCc-EEEE-eCC--CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-------
Confidence 00 000011233567799999999 5443 333 2358888887 6766554332111 00000112222
Q ss_pred cCCeEEEEeccCCceEEEEEeCCCceeecccc---CC------eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCC
Q 004067 379 YSGGFIWASEKTGFRHLYLHDINGTCLGPITE---GD------WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP 449 (776)
Q Consensus 379 ~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~---~~------~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~ 449 (776)
++..+++....++.-.+|.++..+++.+.+.. .. ..... +.|+|||++||+....++ .+.+|.++.
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-i~~spdG~~l~v~~~~~~--~v~v~~~~~-- 271 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA-IRLSHDGHFLYVSNRGYN--TLAVFAVTA-- 271 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE-EEECTTSCEEEEEEETTT--EEEEEEECG--
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee-EEECCCCCEEEEEeCCCC--EEEEEEECC--
Confidence 22234554555663344444443455332211 11 22333 459999999888776543 367777764
Q ss_pred CCCCccccceeecC-CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEE--EcCCCce
Q 004067 450 DWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLC--SLQDGSL 502 (776)
Q Consensus 450 ~g~~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~--~~~~~~~ 502 (776)
+|. ......+.. ......++|||||++|+....... .+.++ +..+|+.
T Consensus 272 ~g~--~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~---~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 272 DGH--LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD---NATLYARDLTSGKL 322 (347)
T ss_dssp GGC--EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT---EEEEEEECTTTCCE
T ss_pred CCc--EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC---cEEEEEEeCCCCeE
Confidence 332 112334443 223568899999998877655433 35555 6656663
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-12 Score=134.13 Aligned_cols=278 Identities=11% Similarity=0.062 Sum_probs=180.5
Q ss_pred CCceeEcCC-CCEEEEEeCCCCcCcceEEEEecCCCce------EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 004067 57 PTSIGFSPD-DNLITYLLSPDHSLSRKVFSFDPKTCKQ------ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR 129 (776)
Q Consensus 57 ~~~~~~SpD-G~~ia~~~~~~~~~~~~l~~~~~~~~~~------~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (776)
++.++|||| |+.|+-.+. + ..|.+||+.+++. +.+..| ...+..
T Consensus 41 V~~v~~sp~~~~~l~S~s~-D----~~i~vWd~~~~~~~~~~~~~~l~~h------------------------~~~V~~ 91 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASR-D----KTIIMWKLTRDETNYGIPQRALRGH------------------------SHFVSD 91 (340)
T ss_dssp EEEEEECTTCTTEEEEEET-T----SCEEEEEECCSSSCSEEEEEEECCC------------------------SSCEEE
T ss_pred EEEEEEeCCCCCEEEEEcC-C----CeEEEEECCCCCcccceeeEEEeCC------------------------CCCEEE
Confidence 689999998 577775443 2 4699999876542 122222 246889
Q ss_pred EEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEee
Q 004067 130 YEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTH 207 (776)
Q Consensus 130 ~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~ 207 (776)
..|+| ||+.|+.. .++.|++|+............ .........++|+++.|+..+. +.+.+|++..........
T Consensus 92 ~~~s~---dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 92 VVISS---DGQFALSGSWDGTLRLWDLTTGTTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp EEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred EEECC---CCCEEEEEcccccceEEeecccceeeeecC-CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 99999 99999876 788899999998877623332 2234667889999999888765 578999987665544433
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.+.. ..+..+.|++++...++.+.... ..|
T Consensus 168 ~~~~----------------~~v~~~~~~~~~~~~~~~s~~~d----------------------------------~~i 197 (340)
T 4aow_A 168 ESHS----------------EWVSCVRFSPNSSNPIIVSCGWD----------------------------------KLV 197 (340)
T ss_dssp SSCS----------------SCEEEEEECSCSSSCEEEEEETT----------------------------------SCE
T ss_pred cccc----------------CcccceEEccCCCCcEEEEEcCC----------------------------------CEE
Confidence 2211 11345678888765444332110 237
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHD 367 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 367 (776)
.+||+.+++..... ..+...+..++|+|||++|+..+ .+..|.+||+.++.............. -
T Consensus 198 ~i~d~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~s----~Dg~i~iwd~~~~~~~~~~~~~~~v~~---~ 262 (340)
T 4aow_A 198 KVWNLANCKLKTNH--------IGHTGYLNTVTVSPDGSLCASGG----KDGQAMLWDLNEGKHLYTLDGGDIINA---L 262 (340)
T ss_dssp EEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTCEEEEEETTTTEEEEEEECSSCEEE---E
T ss_pred EEEECCCCceeeEe--------cCCCCcEEEEEECCCCCEEEEEe----CCCeEEEEEeccCceeeeecCCceEEe---e
Confidence 89999988765542 45667789999999999877665 456799999998876554443332111 1
Q ss_pred ccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cc---------cCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-IT---------EGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt---------~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
.+.+++.++++..++ .|++|+++++.... +. .+...+..+ .|+|||++|+. +..++.
T Consensus 263 ---------~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~s~dg~~l~s-gs~Dg~ 329 (340)
T 4aow_A 263 ---------CFSPNRYWLCAATGP--SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL-AWSADGQTLFA-GYTDNL 329 (340)
T ss_dssp ---------EECSSSSEEEEEETT--EEEEEETTTTEEEEEECCC-------CCCCCEEEE-EECTTSSEEEE-EETTSC
T ss_pred ---------ecCCCCceeeccCCC--EEEEEECCCCeEEEeccccceeeeccCCCCCEEEE-EECCCCCEEEE-EeCCCE
Confidence 122333334444455 79999988765321 21 123345555 49999997554 444543
Q ss_pred ceeeEEEEEe
Q 004067 438 LESHLYCAKL 447 (776)
Q Consensus 438 ~~~~l~~~~~ 447 (776)
+.||++..
T Consensus 330 --v~iW~~~t 337 (340)
T 4aow_A 330 --VRVWQVTI 337 (340)
T ss_dssp --EEEEEEEC
T ss_pred --EEEEeCCC
Confidence 88999884
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-12 Score=135.82 Aligned_cols=284 Identities=13% Similarity=0.035 Sum_probs=171.4
Q ss_pred CeeeEEEee--cCC-CceEEEEe-CCCcEEEEeCCCCcc-------ceecCCCCCCCccCceeCCCCCEEEEEEC-CcEE
Q 004067 126 GVTRYEWVK--TSS-KKKIIMVP-LPDGIYFQDLSCSKP-------ELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELH 193 (776)
Q Consensus 126 ~~~~~~~sp--~~~-dg~~l~~~-~~~~l~~~d~~~~~~-------~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~ 193 (776)
.+....|.+ .++ ||+.|+.. .++.|.+||+.+++. ...+..+.. .+....|+||++.|+..+. +.|.
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~~~~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-FVSDLALSQENCFAISSSWDKTLR 101 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-CEEEEEECSSTTEEEEEETTSEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-ceEEEEECCCCCEEEEEcCCCcEE
Confidence 577777721 122 88888876 678999999976432 113443333 4788999999999887774 5799
Q ss_pred EEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCccee
Q 004067 194 VLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDH 273 (776)
Q Consensus 194 ~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (776)
+||+.+++.......... .+..++|+|||+.|+..+.+
T Consensus 102 lwd~~~~~~~~~~~~h~~-----------------~v~~v~~sp~~~~l~s~~~d------------------------- 139 (343)
T 2xzm_R 102 LWDLRTGTTYKRFVGHQS-----------------EVYSVAFSPDNRQILSAGAE------------------------- 139 (343)
T ss_dssp EEETTSSCEEEEEECCCS-----------------CEEEEEECSSTTEEEEEETT-------------------------
T ss_pred EEECCCCcEEEEEcCCCC-----------------cEEEEEECCCCCEEEEEcCC-------------------------
Confidence 999998875433222211 14578999999998876643
Q ss_pred cCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCC----------eEEEEEEeecCceEEEEE
Q 004067 274 AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN----------ILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 274 ~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg----------~~l~~~~~~~~~~~~l~~ 343 (776)
..|.+||+.+......... ..+...+..+.|+|++ ..++..+ .+..|.+
T Consensus 140 -----------~~i~~wd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~i 198 (343)
T 2xzm_R 140 -----------REIKLWNILGECKFSSAEK------ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG----WDGRLKV 198 (343)
T ss_dssp -----------SCEEEEESSSCEEEECCTT------TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE----TTSEEEE
T ss_pred -----------CEEEEEeccCCceeeeecc------cCCCceeeeeeeccccccccccCCCCCEEEEEc----CCCEEEE
Confidence 2478999885544333211 2455678899999997 4555544 3557999
Q ss_pred EECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCC-CceeeccccCCeEEEEEEeec
Q 004067 344 FDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN-GTCLGPITEGDWMVEQIVGVN 422 (776)
Q Consensus 344 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~-g~~~~~lt~~~~~~~~~~~~s 422 (776)
||........+..+....... .|+| ++.++++...+| .|++||+. .+...........+..+ .|+
T Consensus 199 wd~~~~~~~~~~~h~~~v~~~---~~s~--------~g~~l~sgs~dg--~v~iwd~~~~~~~~~~~~~~~~v~~v-~~s 264 (343)
T 2xzm_R 199 WNTNFQIRYTFKAHESNVNHL---SISP--------NGKYIATGGKDK--KLLIWDILNLTYPQREFDAGSTINQI-AFN 264 (343)
T ss_dssp EETTTEEEEEEECCSSCEEEE---EECT--------TSSEEEEEETTC--EEEEEESSCCSSCSEEEECSSCEEEE-EEC
T ss_pred EcCCCceeEEEcCccccceEE---EECC--------CCCEEEEEcCCC--eEEEEECCCCcccceeecCCCcEEEE-EEC
Confidence 995443333333333222211 2333 334666666677 89999983 33322222222335554 499
Q ss_pred CCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec-----------CC-CCeEEEEEcCCcCEEEEEeeCCCCCC
Q 004067 423 EASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-----------NG-KGKHVAVLDHNMRNFVDFHDSLDSPP 490 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~-----------~~-~~~~~~~~spdg~~l~~~~~~~~~~~ 490 (776)
|+++.++. +. ++. +.+|.+.. +.. .....+. .+ ..+..++|+|||+.|+..... .
T Consensus 265 p~~~~la~-~~-d~~--v~iw~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D----g 331 (343)
T 2xzm_R 265 PKLQWVAV-GT-DQG--VKIFNLMT---QSK--APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD----G 331 (343)
T ss_dssp SSSCEEEE-EE-SSC--EEEEESSS---CCS--CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT----S
T ss_pred CCCCEEEE-EC-CCC--EEEEEeCC---CCC--CceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC----c
Confidence 99986543 33 322 67776642 210 0111222 11 236788999999988776433 3
Q ss_pred EEEEEEcCCC
Q 004067 491 RILLCSLQDG 500 (776)
Q Consensus 491 ~i~~~~~~~~ 500 (776)
.|.+|+..++
T Consensus 332 ~v~~w~~~~g 341 (343)
T 2xzm_R 332 VIRTFSFETS 341 (343)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEcc
Confidence 6888887554
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-14 Score=145.76 Aligned_cols=198 Identities=16% Similarity=0.115 Sum_probs=118.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCCCchhhhhhhhhccC-CccHHHHHHHHHHHHHc
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCG-RIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~~~~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~ 632 (776)
|+||++||++++.. .|..++..|++ .+|.|+++|+||+|.|...... .+. ....+|+.+.++.+...
T Consensus 39 p~lvllHG~~~~~~-------~w~~~~~~L~~~~~~~via~Dl~GhG~S~~~~~~----~~~~~~~a~dl~~~l~~l~~~ 107 (316)
T 3c5v_A 39 PVLLLLHGGGHSAL-------SWAVFTAAIISRVQCRIVALDLRSHGETKVKNPE----DLSAETMAKDVGNVVEAMYGD 107 (316)
T ss_dssp CEEEEECCTTCCGG-------GGHHHHHHHHTTBCCEEEEECCTTSTTCBCSCTT----CCCHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCcccc-------cHHHHHHHHhhcCCeEEEEecCCCCCCCCCCCcc----ccCHHHHHHHHHHHHHHHhcc
Confidence 78999999766543 34455677776 3899999999999988642110 000 01144555555555321
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCCcc----------------ccccc---c---------
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTSWD----------------GYDTF---Y--------- 682 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~~~----------------~~~~~---~--------- 682 (776)
+ .+++.|+||||||.+|+.+|.+ +|+ ++++|+.++..... .+... .
T Consensus 108 --~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (316)
T 3c5v_A 108 --L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQI 183 (316)
T ss_dssp --C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCCHHHHHHHHHHHHHHHHHSCSCBSSHHHHHHHHHHTTSC
T ss_pred --C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcccccchhhhHHHHHHHHhhCccccccHHHHHHHhhhcccc
Confidence 1 1589999999999999999985 477 88888876532100 00000 0
Q ss_pred ----------cccccCCC-----CC--Cccchh-cCC--------------hhhhhccCCCcEEEEecCCCCccChHHHH
Q 004067 683 ----------TEKYMGLP-----SE--DPVGYE-YSS--------------VMHHVHKMKGKLLLVHGMIDENVHFRHTA 730 (776)
Q Consensus 683 ----------~~~~~~~~-----~~--~~~~~~-~~~--------------~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 730 (776)
........ .. ....+. ... ....+.++++|+|+++|..|...+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lli~g~~D~~~~~~~-- 261 (316)
T 3c5v_A 184 RNLESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLT-- 261 (316)
T ss_dssp CCHHHHHHHHHHHEEECC------------CEEESCCGGGGHHHHHHHHTTHHHHHHHSSSCEEEEESSCCCCCHHHH--
T ss_pred cchhhhhhhhhHHhhhccccccccccccccceeeeecccchhhhhhhhhhhhHHHhhcCCCCEEEEEecccccccHHH--
Confidence 00000000 00 000000 000 011233688999999999997643221
Q ss_pred HHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 731 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 731 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
...+ ....++++++++||.+ ..+.++.+.+.+.+||.+.
T Consensus 262 --~~~~---~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 300 (316)
T 3c5v_A 262 --IGQM---QGKFQMQVLPQCGHAV-HEDAPDKVAEAVATFLIRH 300 (316)
T ss_dssp --HHHH---TTCSEEEECCCCSSCH-HHHSHHHHHHHHHHHHHHT
T ss_pred --HHhh---CCceeEEEcCCCCCcc-cccCHHHHHHHHHHHHHhc
Confidence 1222 2356899999999987 5567889999999999753
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-14 Score=148.11 Aligned_cols=238 Identities=16% Similarity=0.136 Sum_probs=145.8
Q ss_pred CceEEEEEcC--CCcE--EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccc---cc--cc--------cch-hhhHHH
Q 004067 523 PPDIVQIQAN--DGTV--LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCD---SW--IN--------TVD-MRAQYL 584 (776)
Q Consensus 523 ~~~~~~~~~~--dg~~--l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~---~~--~~--------~~~-~~~~~l 584 (776)
...++.+.+. +|.. ..+.++.|.... .+.|+|.+-||..+...-+. .+ .. .++ .+...+
T Consensus 74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~~---~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~~ 150 (462)
T 3guu_A 74 ASFQLQYRTTNTQNEAVADVATVWIPAKPA---SPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIGW 150 (462)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECSSCC---SSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHHH
T ss_pred eEEEEEEEEECCCCCEEEEEEEEEecCCCC---CCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHHH
Confidence 4556666654 4544 788999998752 35799999999544321000 00 00 011 234556
Q ss_pred -HhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC-CCCcEEEEeechHHHHHHHHHhhC---
Q 004067 585 -RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA-KVGHIGLYGWSYGGYLSAITLARF--- 659 (776)
Q Consensus 585 -~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i-d~~~i~l~G~S~GG~~a~~~a~~~--- 659 (776)
.++||+|+++||+|.|.. +...... ...+.|.++++..+. .+ ...+++++|||+||..+++++...
T Consensus 151 ~l~~G~~Vv~~Dy~G~G~~---y~~~~~~---~~~vlD~vrAa~~~~---~~~~~~~v~l~G~S~GG~aal~aa~~~~~y 221 (462)
T 3guu_A 151 ALQQGYYVVSSDHEGFKAA---FIAGYEE---GMAILDGIRALKNYQ---NLPSDSKVALEGYSGGAHATVWATSLAESY 221 (462)
T ss_dssp HHHTTCEEEEECTTTTTTC---TTCHHHH---HHHHHHHHHHHHHHT---TCCTTCEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred HHhCCCEEEEecCCCCCCc---ccCCcch---hHHHHHHHHHHHHhc---cCCCCCCEEEEeeCccHHHHHHHHHhChhh
Confidence 899999999999999853 2211111 011334444444443 23 247999999999999999988754
Q ss_pred -CC-ceEEEEEcCCCCCcccc--------------------cccc---c---cccc-----------CC-----------
Q 004067 660 -PD-VFQCAVSGAPVTSWDGY--------------------DTFY---T---EKYM-----------GL----------- 689 (776)
Q Consensus 660 -~~-~~~~~v~~~~~~~~~~~--------------------~~~~---~---~~~~-----------~~----------- 689 (776)
|+ .+.++++.++..++... ...| . +.++ ..
T Consensus 222 apel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~ 301 (462)
T 3guu_A 222 APELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLT 301 (462)
T ss_dssp CTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred cCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHh
Confidence 33 47788888776653210 0000 0 0000 00
Q ss_pred -CCCCccchhc-CCh---------hh-----------hhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEE
Q 004067 690 -PSEDPVGYEY-SSV---------MH-----------HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 747 (776)
Q Consensus 690 -~~~~~~~~~~-~~~---------~~-----------~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 747 (776)
.......+.. .++ +. ...+.+.|+|++||.+|.++|+..+.++++.+++.|.++++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~~~~ 381 (462)
T 3guu_A 302 YPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGANINFSP 381 (462)
T ss_dssp CTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 0000000100 010 00 0124568999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 748 FPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 748 ~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
|++++|.... ......+.+||+++|
T Consensus 382 y~~~~H~~~~----~~~~~d~l~WL~~r~ 406 (462)
T 3guu_A 382 YPIAEHLTAE----IFGLVPSLWFIKQAF 406 (462)
T ss_dssp ESSCCHHHHH----HHTHHHHHHHHHHHH
T ss_pred ECcCCccCch----hhhHHHHHHHHHHHh
Confidence 9999997632 233678889988753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=6e-13 Score=153.49 Aligned_cols=277 Identities=14% Similarity=0.136 Sum_probs=177.3
Q ss_pred CCceeEcCCCC-EEEEEeCCCCcCcceEEEEecCCCc------eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 004067 57 PTSIGFSPDDN-LITYLLSPDHSLSRKVFSFDPKTCK------QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR 129 (776)
Q Consensus 57 ~~~~~~SpDG~-~ia~~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (776)
++.++|+||+. .|+-.+. + ..|.+|++..+. .+.+..|. ..+..
T Consensus 385 V~~v~~~~~~~~~l~s~s~-D----~~i~~W~~~~~~~~~~~~~~~~~~h~------------------------~~v~~ 435 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASR-D----KSIILWKLTKDDKAYGVAQRRLTGHS------------------------HFVED 435 (694)
T ss_dssp EEEEECCTTCCSEEEEEET-T----SEEEEEECCCSTTCSCEEEEEEECCS------------------------SCEEE
T ss_pred eEEEEecCCCCCEEEEEeC-C----CcEEEEEccCCCcccccccceecCCC------------------------CcEEE
Confidence 57889999875 5553333 3 469999987542 23444432 36889
Q ss_pred EEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEee
Q 004067 130 YEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTH 207 (776)
Q Consensus 130 ~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~ 207 (776)
..|+| ||+.|+.. .++.|.+||+.+++....+..+.. .+..+.|||||+.|+..+. +.|.+|++.+.....+..
T Consensus 436 v~~s~---~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 436 VVLSS---DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511 (694)
T ss_dssp EEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred EEECC---CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC-CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence 99999 99999876 688999999999877645544443 4888999999999988875 579999987665544433
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCC--eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSK--FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
... +...+ +..+.|+|++. .|+..+.+ .
T Consensus 512 ~~~------~h~~~--------v~~~~~~~~~~~~~l~s~s~d------------------------------------~ 541 (694)
T 3dm0_A 512 GGE------GHRDW--------VSCVRFSPNTLQPTIVSASWD------------------------------------K 541 (694)
T ss_dssp STT------SCSSC--------EEEEEECSCSSSCEEEEEETT------------------------------------S
T ss_pred CCC------CCCCc--------EEEEEEeCCCCcceEEEEeCC------------------------------------C
Confidence 221 11111 44788999984 45544432 2
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeec
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 365 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 365 (776)
.|.+||+.+++....- ..+...+..++|||||+.|+..+ .+..|.+||+.+++............
T Consensus 542 ~v~vwd~~~~~~~~~~--------~~h~~~v~~v~~spdg~~l~sg~----~Dg~i~iwd~~~~~~~~~~~~~~~v~--- 606 (694)
T 3dm0_A 542 TVKVWNLSNCKLRSTL--------AGHTGYVSTVAVSPDGSLCASGG----KDGVVLLWDLAEGKKLYSLEANSVIH--- 606 (694)
T ss_dssp CEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSBCEEEETTTTEEEECCBCSSCEE---
T ss_pred eEEEEECCCCcEEEEE--------cCCCCCEEEEEEeCCCCEEEEEe----CCCeEEEEECCCCceEEEecCCCcEE---
Confidence 4799999988765431 45677899999999999887766 44569999999886533222221111
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cccCC-------------------eEEEEEEeecCCC
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITEGD-------------------WMVEQIVGVNEAS 425 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~-------------------~~~~~~~~~s~dg 425 (776)
.-.|+| ++.++..+ .++ .|.+||+.++.... +.... ..+.. +.|||||
T Consensus 607 ~~~~sp--------~~~~l~~~-~~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~spdg 674 (694)
T 3dm0_A 607 ALCFSP--------NRYWLCAA-TEH--GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS-LNWSADG 674 (694)
T ss_dssp EEEECS--------SSSEEEEE-ETT--EEEEEETTTTEEEEEECCCCC----------------CCCCEEE-EEECTTS
T ss_pred EEEEcC--------CCcEEEEE-cCC--CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee-EEEcCCC
Confidence 111222 22244333 333 59999988775432 21110 01233 4599999
Q ss_pred cEEEEEEccCCCceeeEEEEE
Q 004067 426 GQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 426 ~~i~~~~~~~~~~~~~l~~~~ 446 (776)
++|+. ++.++ .+.+|.+.
T Consensus 675 ~~l~s-gs~Dg--~i~iW~i~ 692 (694)
T 3dm0_A 675 STLFS-GYTDG--VIRVWGIG 692 (694)
T ss_dssp SEEEE-EETTS--EEEEEEC-
T ss_pred CEEEE-EcCCC--eEEEEecc
Confidence 97654 44444 37888764
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-16 Score=159.51 Aligned_cols=196 Identities=11% Similarity=-0.057 Sum_probs=116.2
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|.||++||.+++.. .|..++..|.+ ||.|+++|+||+|.+.... ....+.++.+.+..++...
T Consensus 51 ~~~lvllHG~~~~~~-------~~~~l~~~L~~-~~~v~~~D~~G~G~S~~~~--------~~~~~~~~a~~~~~~l~~~ 114 (280)
T 3qmv_A 51 PLRLVCFPYAGGTVS-------AFRGWQERLGD-EVAVVPVQLPGRGLRLRER--------PYDTMEPLAEAVADALEEH 114 (280)
T ss_dssp SEEEEEECCTTCCGG-------GGTTHHHHHCT-TEEEEECCCTTSGGGTTSC--------CCCSHHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCChH-------HHHHHHHhcCC-CceEEEEeCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHh
Confidence 388999999876644 34455777776 9999999999999774321 1223455554444444332
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceE----EEEEcCCCCCccccc--------cccc---ccccCCCCC---Ccc
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQ----CAVSGAPVTSWDGYD--------TFYT---EKYMGLPSE---DPV 695 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~----~~v~~~~~~~~~~~~--------~~~~---~~~~~~~~~---~~~ 695 (776)
. ...++.|+||||||.+|+.+|.++|+++. .+++........... ..+. ..+.+.+.. ...
T Consensus 115 ~-~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (280)
T 3qmv_A 115 R-LTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAA 193 (280)
T ss_dssp T-CSSSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC--------
T ss_pred C-CCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHH
Confidence 1 34689999999999999999998876655 555543322110000 0000 000011110 000
Q ss_pred c-------h-------hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCC-CCc
Q 004067 696 G-------Y-------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR-HRD 760 (776)
Q Consensus 696 ~-------~-------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~-~~~ 760 (776)
. + .... .....++++|+|+++|++|..+++.....+.+.+ ....+++++++ ||.... .+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~g-gH~~~~~~~~ 268 (280)
T 3qmv_A 194 YFDRRLPVLRADLRACERYD-WHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYT---TGSFLRRHLPG-NHFFLNGGPS 268 (280)
T ss_dssp -CCTTHHHHHHHHHHHHTCC-CCCCCCBCSCEEEEEEEECSSSCHHHHHTTGGGB---SSCEEEEEEEE-ETTGGGSSHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccCCCceecCeEEEEecCCCCcChHHHHHHHHhc---CCceEEEEecC-CCeEEcCchh
Confidence 0 0 0000 0113577899999999999999988776665543 34567888885 997632 244
Q ss_pred HHHHHHHHHHH
Q 004067 761 RIYMEERIWEF 771 (776)
Q Consensus 761 ~~~~~~~~~~f 771 (776)
..++.+.+.+|
T Consensus 269 ~~~~~~~i~~~ 279 (280)
T 3qmv_A 269 RDRLLAHLGTE 279 (280)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 55555555544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=146.66 Aligned_cols=203 Identities=12% Similarity=0.033 Sum_probs=131.0
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+..++|||||++|+..+. ...|.+|++.++..+.+.... .+...+....|+|
T Consensus 13 ~v~~~~~s~~g~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~---------------------~h~~~v~~~~~s~- 65 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTA-----TNQVELYEQDGNGWKHARTFS---------------------DHDKIVTCVDWAP- 65 (377)
T ss_dssp CCSCCEECSSSSEEECCCS-----SSCBCEEEEETTEEEECCCBC---------------------CCSSCEEEEEECT-
T ss_pred cEEEEEECCCCCEEEEecC-----CCEEEEEEccCCceEEEEEEe---------------------cCCceEEEEEEeC-
Confidence 3589999999999985433 346999999887433322111 0124688999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCc---cceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCc----eeEEe
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSK---PELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINE----QRQLT 206 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~---~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~----~~~lt 206 (776)
||++|+.. .++.|++||+.+++ ....+..... .+..+.|+|||+.|+..+. +.|.+|++.+++ .+.+.
T Consensus 66 --~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (377)
T 3dwl_C 66 --KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR-AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK 142 (377)
T ss_dssp --TTCCEEEEETTSSEEEC------CCCCEEECCCCSS-CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC
T ss_pred --CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC-ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee
Confidence 99998876 67899999999887 2213443333 4888999999999998875 579999999886 33332
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
.... ..+..++|+|||+.|+..+.+. .
T Consensus 143 ~~h~-----------------~~v~~~~~~~~~~~l~~~~~d~------------------------------------~ 169 (377)
T 3dwl_C 143 RPLR-----------------STILSLDWHPNNVLLAAGCADR------------------------------------K 169 (377)
T ss_dssp SSCC-----------------SCEEEEEECTTSSEEEEEESSS------------------------------------C
T ss_pred cccC-----------------CCeEEEEEcCCCCEEEEEeCCC------------------------------------E
Confidence 2011 1145789999999988776432 2
Q ss_pred EEEEEcCCCceE---------------EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 287 LGVVSAAGGPVS---------------WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 287 l~~~d~~~~~~~---------------~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
|++||+..++.. .+.. . ..+...+..++|+|||++|+..+ .+..|.+||+.+++.
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~v~~~~~sp~~~~l~~~~----~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCA-----E-YPSGGWVHAVGFSPSGNALAYAG----HDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEE-----C-CCCSSSEEEEEECTTSSCEEEEE----TTTEEC-CEECSTTS
T ss_pred EEEEEEEecccCCCccccccccccchhhhhh-----c-ccCCceEEEEEECCCCCEEEEEe----CCCcEEEEECCCCCC
Confidence 567776533211 1100 1 24566789999999999777765 345699999988875
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-13 Score=155.40 Aligned_cols=259 Identities=8% Similarity=0.057 Sum_probs=158.9
Q ss_pred CCceeEc-CCCCEEEEEeCCCCcCcceEEEEecCCC-ceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFS-PDDNLITYLLSPDHSLSRKVFSFDPKTC-KQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~S-pDG~~ia~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
...++|| |||++|||.....|....+||++|+++| +. +... + ......+.|||
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~---------~--------------~~~~~~~~Wsp 230 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADK---------V--------------SGTNGEIVWGP 230 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCC---------E--------------EEECSCCEECS
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCcc---------c--------------cCceeeEEEec
Confidence 4678999 9999999999876654567999999998 62 1110 0 01234689999
Q ss_pred cCCCceEEEEeCC------CcEEEEeCCCCccce-ec-CCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCC--
Q 004067 135 TSSKKKIIMVPLP------DGIYFQDLSCSKPEL-KL-SSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLIN-- 200 (776)
Q Consensus 135 ~~~dg~~l~~~~~------~~l~~~d~~~~~~~~-~l-~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g-- 200 (776)
||+.|+|... .+||++++.++.... .+ ..........+.|||||++|++... .+||+++++++
T Consensus 231 ---Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~ 307 (751)
T 2xe4_A 231 ---DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA 307 (751)
T ss_dssp ---STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT
T ss_pred ---CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC
Confidence 9999999832 369999999876431 22 1111122456899999999999884 36999999986
Q ss_pred ce--eEEeeCCCCCceecCCcccceecccCCcceEEECCC---CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 201 EQ--RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD---SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 201 ~~--~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
+. +.++.... ...|+|| |+.|+|.+.....
T Consensus 308 ~~~~~~l~~~~~---------------------~~~~s~~~~~g~~l~~~t~~~~a------------------------ 342 (751)
T 2xe4_A 308 HNTLEIVRPREK---------------------GVRYDVQMHGTSHLVILTNEGGA------------------------ 342 (751)
T ss_dssp CCCEEESSCCCT---------------------TCCEEEEEETTTEEEEEECTTTC------------------------
T ss_pred CceeEEeecCCC---------------------CceEEEeeeeCCEEEEEeCCCCC------------------------
Confidence 34 55543221 2236666 9999998753200
Q ss_pred CCCCCCCCeEEEEEEEcCC-CceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC-------
Q 004067 276 PFAGASNVKVRLGVVSAAG-GPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI------- 346 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~-~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~------- 346 (776)
....|+++++++ ++.+. +.. ......+..+ +++++.|++...++ ....|+++|+
T Consensus 343 -------~~~~L~~~d~~~~~~~~~~li~-------~~~~~~l~~~--~~~~~~lv~~~~~~-g~~~l~~~dl~~~~~~~ 405 (751)
T 2xe4_A 343 -------VNHKLLIAPRGQPSDWSHVLVD-------HSEDVFMESI--AVRSNYLVVAGRRA-GLTRIWTMMADSQDGVF 405 (751)
T ss_dssp -------TTCEEEEEETTSTTCCCCEEEC-------CCSSEEEEEE--EECSSEEEEEEEET-TEEEEEEEECCTTTSCC
T ss_pred -------CCcEEEEEcCCCcccceeeEEC-------CCCCcEEEEE--EEECCEEEEEEEeC-CEEEEEEEecccccccc
Confidence 115688999876 34333 311 1122234444 44566676665544 5678999996
Q ss_pred CCCc-eEEEEEeccCceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCceeecccc
Q 004067 347 KTGQ-RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPITE 410 (776)
Q Consensus 347 ~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~~~~lt~ 410 (776)
++++ .+.|.-... ..... +..... ...+++.+++... ......+|.+++.+++.+.|+.
T Consensus 406 ~~g~~~~~l~l~~~-~~~~~---~~~~~~-~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 406 KAGTGLREVVMEEP-IFTVH---LVESQM-LEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKV 466 (751)
T ss_dssp CTTTCCEECCCCCS-SCEEE---ECGGGC-CCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEE
T ss_pred cCCccceEECCCCc-eeEEE---eccCcc-cCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 6666 666632111 11100 100000 0123445655543 3445689999998887766653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-12 Score=139.51 Aligned_cols=276 Identities=11% Similarity=0.083 Sum_probs=178.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..+.||+ +.++..+. ...|++|++++++...+..... ...+..+.|+|
T Consensus 97 ~~~~~s~--~~l~~~~~-----d~~v~lw~~~~~~~~~~~~~~~----------------------~~~v~~v~~s~--- 144 (401)
T 4aez_A 97 NLLDWSN--LNVVAVAL-----ERNVYVWNADSGSVSALAETDE----------------------STYVASVKWSH--- 144 (401)
T ss_dssp BCEEECT--TSEEEEEE-----TTEEEEEETTTCCEEEEEECCT----------------------TCCEEEEEECT---
T ss_pred EEEeecC--CCEEEEEC-----CCeEEEeeCCCCcEeEeeecCC----------------------CCCEEEEEECC---
Confidence 4466665 44554433 2469999999998866664211 24688999999
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCcee
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
||+.|+.. .++.|.+||+.+++....+.... ..+..+.| +++.|+..+. +.|.+|++..+.....+.....
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---- 217 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ-ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS---- 217 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS----
T ss_pred CCCEEEEECCCCeEEEEECcCCeEEEEecCCC-CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCC----
Confidence 99999987 68899999999887663554333 34677777 5677777664 5799999985433222221111
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
..+..+.|+|||+.|+....+ ..|.+||+.++
T Consensus 218 ------------~~v~~~~~~~~~~~l~s~~~d------------------------------------~~v~iwd~~~~ 249 (401)
T 4aez_A 218 ------------SEVCGLAWRSDGLQLASGGND------------------------------------NVVQIWDARSS 249 (401)
T ss_dssp ------------SCEEEEEECTTSSEEEEEETT------------------------------------SCEEEEETTCS
T ss_pred ------------CCeeEEEEcCCCCEEEEEeCC------------------------------------CeEEEccCCCC
Confidence 114578899999998877643 24799999987
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
+..... ..+...+..++|+|++..++.+.. +..+..|.+||+.+++............. -.|+|
T Consensus 250 ~~~~~~--------~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~~~v~~---~~~s~---- 313 (401)
T 4aez_A 250 IPKFTK--------TNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAGSQVTS---LIWSP---- 313 (401)
T ss_dssp SEEEEE--------CCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECSSCEEE---EEECS----
T ss_pred CccEEe--------cCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCCCcEEE---EEECC----
Confidence 765432 345667889999999875554432 12356799999999887655544332111 12323
Q ss_pred ccccCCeEEEEec--cCCceEEEEEeCCCceeec---cccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 376 VTKYSGGFIWASE--KTGFRHLYLHDINGTCLGP---ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 376 ~~~~~~~~~~~s~--~~g~~~l~~~~~~g~~~~~---lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
++..++++. .+| .|++|+..+++... +..+...+..+. |++||++|+..+ .++ .+.+|.+.
T Consensus 314 ----~~~~l~~~~g~~dg--~i~v~~~~~~~~~~~~~~~~h~~~v~~~~-~s~dg~~l~s~~-~dg--~i~iw~~~ 379 (401)
T 4aez_A 314 ----HSKEIMSTHGFPDN--NLSIWSYSSSGLTKQVDIPAHDTRVLYSA-LSPDGRILSTAA-SDE--NLKFWRVY 379 (401)
T ss_dssp ----SSSEEEEEECTTTC--EEEEEEEETTEEEEEEEEECCSSCCCEEE-ECTTSSEEEEEC-TTS--EEEEEECC
T ss_pred ----CCCeEEEEeecCCC--cEEEEecCCccceeEEEecCCCCCEEEEE-ECCCCCEEEEEe-CCC--cEEEEECC
Confidence 233444432 456 88888877654333 344455555554 999999765544 443 37777776
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-13 Score=139.45 Aligned_cols=262 Identities=9% Similarity=-0.026 Sum_probs=171.2
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc----eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK----QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~----~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+..++|||||++|+..+.+ ..|++|++.+++ .+.+..+. ..+..+.|
T Consensus 14 v~~~~~s~~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~ 64 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRYK------------------------HPLLCCNF 64 (342)
T ss_dssp EEEEEEEGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEECS------------------------SCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCC-----CeEEEEEeCCCCccccceeeeecC------------------------CceEEEEE
Confidence 5789999999999876542 469999999887 55555432 36889999
Q ss_pred eecCCCce-EEEEe-CCCcEEEEeC-CCCccceecCC--CCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC-------
Q 004067 133 VKTSSKKK-IIMVP-LPDGIYFQDL-SCSKPELKLSS--SSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI------- 199 (776)
Q Consensus 133 sp~~~dg~-~l~~~-~~~~l~~~d~-~~~~~~~~l~~--~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~------- 199 (776)
+| ||+ .|+.. .++.|++||+ .+++.. .+.. ... .+..+.|+| ++.|+.... +.|.+|++.+
T Consensus 65 ~~---~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 65 ID---NTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTNNEANL-GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp EE---SSSEEEEEEETTSCEEEECSSSSSSEE-ECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred CC---CCCcEEEEEcCCCeEEEEEeccCCceE-eccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence 99 999 78776 6889999999 888776 6665 443 478899999 888888775 5699999876
Q ss_pred --CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC
Q 004067 200 --NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277 (776)
Q Consensus 200 --g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (776)
++........ ..+..+.|+|++ |+....+
T Consensus 139 ~~~~~~~~~~~~------------------~~v~~~~~~~~~--l~~~~~d----------------------------- 169 (342)
T 1yfq_A 139 VKNLNSNNTKVK------------------NKIFTMDTNSSR--LIVGMNN----------------------------- 169 (342)
T ss_dssp EEESCSSSSSSC------------------CCEEEEEECSSE--EEEEEST-----------------------------
T ss_pred ccCCeeeEEeeC------------------CceEEEEecCCc--EEEEeCC-----------------------------
Confidence 3321111110 124578899988 5554422
Q ss_pred CCCCCCeEEEEEEEcCC-CceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCC------
Q 004067 278 AGASNVKVRLGVVSAAG-GPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTG------ 349 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g------ 349 (776)
..|.+||+.+ ++....... ..+...+..+.|+| ||+.++... .+..|.+|+.+.+
T Consensus 170 -------~~i~i~d~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~l~~~~----~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 170 -------SQVQWFRLPLCEDDNGTIEE------SGLKYQIRDVALLPKEQEGYACSS----IDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp -------TEEEEEESSCCTTCCCEEEE------CSCSSCEEEEEECSGGGCEEEEEE----TTSEEEEEECCTTCCSTTC
T ss_pred -------CeEEEEECCccccccceeee------cCCCCceeEEEECCCCCCEEEEEe----cCCcEEEEEEcCCCccccc
Confidence 3589999987 543211111 34456788999999 999777765 3445778777665
Q ss_pred ceEEEEE-ecc-------CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccC-CeEEEEEE
Q 004067 350 QRKVILV-EEL-------DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEG-DWMVEQIV 419 (776)
Q Consensus 350 ~~~~l~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~-~~~~~~~~ 419 (776)
....... +.. ...+ ..-.|+| ++.++++...+| .|++||+..++ ...+..+ ...+..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~--------~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPV-NSIEFSP--------RHKFLYTAGSDG--IISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCE-EEEEECT--------TTCCEEEEETTS--CEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred ccceeeecccccccccccceeE-EEEEEcC--------CCCEEEEecCCc--eEEEEcCccHhHhhhhhcccCCCceEec
Confidence 3333322 221 0010 0111222 234556666667 89999988665 4556655 55566553
Q ss_pred eecCCCcEEEEEEc
Q 004067 420 GVNEASGQVYFTGT 433 (776)
Q Consensus 420 ~~s~dg~~i~~~~~ 433 (776)
++|+.|+..+.
T Consensus 302 ---~~~~~l~s~s~ 312 (342)
T 1yfq_A 302 ---CSDNILCLATS 312 (342)
T ss_dssp ---ECSSEEEEEEE
T ss_pred ---CCCCeEEEEec
Confidence 88887665554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=148.43 Aligned_cols=288 Identities=9% Similarity=0.015 Sum_probs=174.1
Q ss_pred CCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
++.++|+| +++.||.-+. ...|.+||+++++...+..... +...|....|+|
T Consensus 122 V~~l~~~P~~~~~lasGs~-----dg~i~lWd~~~~~~~~~~~~~g---------------------H~~~V~~l~f~p- 174 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSK-----GGDIMLWNFGIKDKPTFIKGIG---------------------AGGSITGLKFNP- 174 (435)
T ss_dssp EEEEEECSSCTTCEEEEET-----TSCEEEECSSCCSCCEEECCCS---------------------SSCCCCEEEECS-
T ss_pred EEEEEEeCCCCCEEEEEeC-----CCEEEEEECCCCCceeEEEccC---------------------CCCCEEEEEEeC-
Confidence 57899999 5667775443 2469999999887544442111 124688999997
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCC--CCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCC
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSC--SPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~--~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
.|++.|+.. .++.|.+||+.++... .+..... ..+..+.|+|||+.|+.... +.|++|++.+.....+.....
T Consensus 175 -~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~- 251 (435)
T 4e54_B 175 -LNTNQFYASSMEGTTRLQDFKGNILR-VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKK- 251 (435)
T ss_dssp -SCTTEEEEECSSSCEEEEETTSCEEE-EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSS-
T ss_pred -CCCCEEEEEeCCCEEEEeeccCCcee-EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccc-
Confidence 146677655 7889999999987765 4333221 22566899999999887764 579999998665443321111
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
.+..+.|+|+++.++.....+ ..|.+||
T Consensus 252 -----------------~v~~v~~~p~~~~~~~s~s~d-----------------------------------~~v~iwd 279 (435)
T 4e54_B 252 -----------------KVTHVALNPCCDWFLATASVD-----------------------------------QTVKIWD 279 (435)
T ss_dssp -----------------CEEEEEECTTCSSEEEEEETT-----------------------------------SBCCEEE
T ss_pred -----------------eEEeeeecCCCceEEEEecCc-----------------------------------ceeeEEe
Confidence 145789999998766544322 2367888
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccC--cee-eccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELD--SWV-NLHD 367 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~--~~~-~~~~ 367 (776)
+.+++...... ....+...+..++|||||+.|+..+ .+..|.+||+.++...... .+... .+. ....
T Consensus 280 ~~~~~~~~~~~-----~~~~h~~~v~~~~~spdg~~l~s~~----~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 280 LRQVRGKASFL-----YSLPHRHPVNAACFSPDGARLLTTD----QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp TTTCCSSSCCS-----BCCBCSSCEEECCBCTTSSEEEEEE----SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred cccccccceEE-----EeeeccccccceeECCCCCeeEEEc----CCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 87654321100 0134567789999999999887765 3456999999887754332 22111 110 0011
Q ss_pred ccccCCCCccccCCeEEEEeccC---------CceEEEEEeCCCcee-ecccc-CCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKT---------GFRHLYLHDINGTCL-GPITE-GDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~---------g~~~l~~~~~~g~~~-~~lt~-~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
.|.+. +..++.....+ ....|.+|+..+++. .++.. +...+.....|+|||+.|+ .+. ++
T Consensus 351 ~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~la-sg~-d~ 421 (435)
T 4e54_B 351 AWHPR-------YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLA-SAM-GY 421 (435)
T ss_dssp EECSS-------SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEE-EEC-SS
T ss_pred EEcCC-------CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEE-EEc-CC
Confidence 12221 11122211111 123689999877654 34443 3334555556999999654 343 32
Q ss_pred CceeeEEEEE
Q 004067 437 PLESHLYCAK 446 (776)
Q Consensus 437 ~~~~~l~~~~ 446 (776)
.+.||.+.
T Consensus 422 --~i~iW~~~ 429 (435)
T 4e54_B 422 --HILIWSQQ 429 (435)
T ss_dssp --EEEECCCC
T ss_pred --cEEEEECC
Confidence 36777665
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-13 Score=139.95 Aligned_cols=291 Identities=12% Similarity=0.100 Sum_probs=178.0
Q ss_pred CCceeEcCC---CCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPD---DNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpD---G~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+..++|||+ |+.+.+....+ ..|.+|++.+++. +.+..+... .+...+....|
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~----~~v~vw~~~~~~~~~~~~~~~~~-------------------~~~~~v~~~~~ 77 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGS----NRVTLYECHSQGEIRLLQSYVDA-------------------DADENFYTCAW 77 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEET----TEEEEEEECGGGCEEEEEEEECS-------------------CTTCCEEEEEE
T ss_pred eEEEEEecccCCCCceEEEECCC----CEEEEEEcCCCcEEEeeeecccc-------------------CCCCcEEEEEe
Confidence 478999985 66555555433 3699999987654 333321110 01246889999
Q ss_pred eecCCC----ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEEC-CcEEEEecCCCceeEE
Q 004067 133 VKTSSK----KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVRD-CELHVLNLLINEQRQL 205 (776)
Q Consensus 133 sp~~~d----g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~-~~l~~~~l~~g~~~~l 205 (776)
+| + |+.|+.. .++.|.+||+.+++....+.... ..+..+.|+| |++.|+.... +.|.+|++.+++....
T Consensus 78 ~~---~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 153 (366)
T 3k26_A 78 TY---DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG-NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 153 (366)
T ss_dssp EE---CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC-SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cc---CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC-CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence 99 8 6677765 77889999999888764454333 3588899999 8998888774 5799999998876554
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
...-.. . ...+..+.|+|||+.|+....+ .
T Consensus 154 ~~~~~~------~--------~~~v~~~~~~~~~~~l~~~~~d------------------------------------g 183 (366)
T 3k26_A 154 FGGVEG------H--------RDEVLSADYDLLGEKIMSCGMD------------------------------------H 183 (366)
T ss_dssp ECSTTS------C--------SSCEEEEEECTTSSEEEEEETT------------------------------------S
T ss_pred eccccc------c--------cCceeEEEECCCCCEEEEecCC------------------------------------C
Confidence 321000 0 0114578999999998876643 2
Q ss_pred EEEEEEcCCCceEEE-Ec----cc------------CCC---CCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEE
Q 004067 286 RLGVVSAAGGPVSWM-DL----QC------------GGT---DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l-~~----~~------------~~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 345 (776)
.|.+||+.+++.... .. .. ..+ ....+...+..++|+ ++.++... .+..|.+||
T Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~----~d~~i~~wd 257 (366)
T 3k26_A 184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS----CENAIVCWK 257 (366)
T ss_dssp CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC----SSSEEEEEE
T ss_pred CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe----cCCEEEEEe
Confidence 367777776542210 00 00 000 012255667888998 55565554 355699999
Q ss_pred CCCCce------------EEEEEe---ccCceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCcee----
Q 004067 346 IKTGQR------------KVILVE---ELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCL---- 405 (776)
Q Consensus 346 ~~~g~~------------~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~---- 405 (776)
+.++.. ..+... ....+. -.|+| +. +.++++...+| .|++|++.+++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~-------~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 258 PGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY---MRFSM-------DFWQKMLALGNQVG--KLYVWDLEVEDPHKAK 325 (366)
T ss_dssp ESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC---CCCEE-------CTTSSEEEEECTTS--CEEEEECCSSSGGGCE
T ss_pred CCCccccccccccCCcchheeccccccCCcEEE---EEEcC-------CCCCcEEEEEecCC--cEEEEECCCCCCcccc
Confidence 877643 222221 111110 11222 21 45667776777 899999887643
Q ss_pred -eccccC--CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 406 -GPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 406 -~~lt~~--~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
..+..+ ...+..+. |+++|+.|+..+ .++ .+.+|.+.
T Consensus 326 ~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~-~dg--~i~iwd~~ 365 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTS-FSRDSSILIAVC-DDA--SIWRWDRL 365 (366)
T ss_dssp EEEECCTTCCSCEEEEE-ECTTSSEEEEEE-TTS--EEEEEEC-
T ss_pred ceEEcccccCCceEEEE-eCCCCCeEEEEe-CCC--EEEEEEec
Confidence 245544 34566654 999999766554 333 37777653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-12 Score=150.32 Aligned_cols=213 Identities=9% Similarity=0.085 Sum_probs=140.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++||.-+.+ ..|++|+..+++......+ ...+....|+|
T Consensus 20 V~~lafspdg~~lAsgs~D-----g~I~lw~~~~~~~~~~~~~------------------------~~~V~~l~fsp-- 68 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVT-----GEVHIYGQQQVEVVIKLED------------------------RSAIKEMRFVK-- 68 (902)
T ss_dssp EEEEEEETTTTEEEEEETT-----SEEEEECSTTCEEEEECSS------------------------CCCEEEEEEET--
T ss_pred cEEEEECCCCCEEEEEeCC-----CEEEEEeCCCcEEEEEcCC------------------------CCCEEEEEEcC--
Confidence 4789999999999965542 4699999987765443322 13688999998
Q ss_pred CCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCC--
Q 004067 137 SKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGN-- 212 (776)
Q Consensus 137 ~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~-- 212 (776)
|++|+. ..++.|.+||+.+++....+.. . ..+..+.|+|||+.|+.... +.|.+||+.+++...........
T Consensus 69 --g~~L~S~s~D~~v~lWd~~~~~~~~~~~~-~-~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~ 144 (902)
T 2oaj_A 69 --GIYLVVINAKDTVYVLSLYSQKVLTTVFV-P-GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSS 144 (902)
T ss_dssp --TTEEEEEETTCEEEEEETTTCSEEEEEEC-S-SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHH
T ss_pred --CCEEEEEECcCeEEEEECCCCcEEEEEcC-C-CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccc
Confidence 555554 4788999999998876534442 2 24788999999999988764 57999999988754322100000
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
... ......+..++|+|++..++...... ..+ +||+
T Consensus 145 ~~~--------~~h~~~V~sl~~sp~~~~~l~~g~~d-----------------------------------g~v-lWd~ 180 (902)
T 2oaj_A 145 FFP--------AARLSPIVSIQWNPRDIGTVLISYEY-----------------------------------VTL-TYSL 180 (902)
T ss_dssp TCS--------SSCCCCCCEEEEETTEEEEEEEECSS-----------------------------------CEE-EEET
T ss_pred ccc--------ccCCCCeEEEEEccCCCCEEEEEeCC-----------------------------------CcE-EEEC
Confidence 000 11123366899999754333333221 347 9999
Q ss_pred CCCceEEEEccc---CCCC-------CCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 293 AGGPVSWMDLQC---GGTD-------QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 293 ~~~~~~~l~~~~---~~~~-------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
.+++....-... +.+. ...+...+..++|+|||++|+..+ .+..|.+||+.+|+..
T Consensus 181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs----~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH----EDNSLVFWDANSGHMI 246 (902)
T ss_dssp TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE----TTCCEEEEETTTCCEE
T ss_pred CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE----CCCeEEEEECCCCcEE
Confidence 988754432110 0000 011235689999999999887776 4556999999887653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-12 Score=137.00 Aligned_cols=242 Identities=13% Similarity=0.068 Sum_probs=157.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCc--cceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSK--PELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g 200 (776)
..+....|+| ||+.|++. .++.|++||+.+++ ....+..... .+..+.|+|||+.|+.... +.|.+|++.++
T Consensus 9 ~~i~~~~~s~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 9 EPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred CCeEEEEECC---CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-cccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 4688999999 99999988 78899999999986 3325544433 4888999999999998875 57999999988
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+.......... ...+..+.|+|||+.|+....+
T Consensus 85 ~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~d-------------------------------- 117 (372)
T 1k8k_C 85 TWKPTLVILRI---------------NRAARCVRWAPNEKKFAVGSGS-------------------------------- 117 (372)
T ss_dssp EEEEEEECCCC---------------SSCEEEEEECTTSSEEEEEETT--------------------------------
T ss_pred eeeeeEEeecC---------------CCceeEEEECCCCCEEEEEeCC--------------------------------
Confidence 75443221110 0114578899999998877643
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-------------
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK------------- 347 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~------------- 347 (776)
..|.+||+++++...+.... ...+...+..+.|+||++.++... .+..|++||+.
T Consensus 118 ----~~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~ 185 (372)
T 1k8k_C 118 ----RVISICYFEQENDWWVCKHI----KKPIRSTVLSLDWHPNSVLLAAGS----CDFKCRIFSAYIKEVEERPAPTPW 185 (372)
T ss_dssp ----SSEEEEEEETTTTEEEEEEE----CTTCCSCEEEEEECTTSSEEEEEE----TTSCEEEEECCCTTTSCCCCCBTT
T ss_pred ----CEEEEEEecCCCcceeeeee----ecccCCCeeEEEEcCCCCEEEEEc----CCCCEEEEEccccccccccccccc
Confidence 23678888776621110000 134566789999999999777665 34568899954
Q ss_pred -----CCceEEEE-EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEe
Q 004067 348 -----TGQRKVIL-VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVG 420 (776)
Q Consensus 348 -----~g~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~ 420 (776)
++...... .+...... -.|+| ++.++++...+| .|.+|++..++ ...+..+...+..+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~---~~~~~--------~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~- 251 (372)
T 1k8k_C 186 GSKMPFGELMFESSSSCGWVHG---VCFSA--------NGSRVAWVSHDS--TVCLADADKKMAVATLASETLPLLAVT- 251 (372)
T ss_dssp BSCCCTTCEEEECCCCSSCEEE---EEECS--------SSSEEEEEETTT--EEEEEEGGGTTEEEEEECSSCCEEEEE-
T ss_pred ccccchhhheEecCCCCCeEEE---EEECC--------CCCEEEEEeCCC--EEEEEECCCCceeEEEccCCCCeEEEE-
Confidence 34433222 22211111 11222 233666666677 89999986554 455555555566654
Q ss_pred ecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 421 VNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 421 ~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
|+++|+.++ .+ .++ .+.+|.+..
T Consensus 252 ~~~~~~~l~-~~-~d~--~i~i~~~~~ 274 (372)
T 1k8k_C 252 FITESSLVA-AG-HDC--FPVLFTYDS 274 (372)
T ss_dssp EEETTEEEE-EE-TTS--SCEEEEEET
T ss_pred EecCCCEEE-EE-eCC--eEEEEEccC
Confidence 999998544 33 333 378888873
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=140.03 Aligned_cols=303 Identities=10% Similarity=0.105 Sum_probs=179.3
Q ss_pred CCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++||| ||++|+..+.+ ..|.+|++.+++.......... ..+... ....+...+....|+|
T Consensus 46 v~~~~~s~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~v~~~~~~~- 109 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSD-----GVIVLYDLENSSRQSYYTCKAV----CSIGRD------HPDVHRYSVETVQWYP- 109 (408)
T ss_dssp EEEEEECTTTCCEEEEEETT-----SCEEEEECCCCSSSSCEEECEE----EEECTT------CTTCCSSCEEEEEECT-
T ss_pred EEEEEEecCCCCEEEEEcCC-----CeEEEEECCCCcccceEecccc----cccccc------ccccCCCcEEEEEEcc-
Confidence 47899999 99999976552 3699999998764332210000 000000 0000124688999998
Q ss_pred CCCce-EEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCC---CCEEEEEEC-CcEEEEecCCCceeEEeeCC
Q 004067 136 SSKKK-IIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSD---GTMIAFVRD-CELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 136 ~~dg~-~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpD---g~~la~~~~-~~l~~~~l~~g~~~~lt~~~ 209 (776)
++. .|+.. .++.|.+||+.+++....+. ... .+....|+|+ +..++.... +.|++|++.+++........
T Consensus 110 --~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 110 --HDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEE-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp --TCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSS-CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC
T ss_pred --CCCcEEEEEeCCCeEEEeeCCCCccceecc-CCC-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC
Confidence 665 44443 68899999999988773333 222 3667788884 447777664 57999999988654433222
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
.. .+..+.|+||++.+++..... ..|.+
T Consensus 186 ~~-----------------~v~~~~~~~~~~~ll~~~~~d-----------------------------------g~i~i 213 (408)
T 4a11_B 186 RQ-----------------EILAVSWSPRYDYILATASAD-----------------------------------SRVKL 213 (408)
T ss_dssp CS-----------------CEEEEEECSSCTTEEEEEETT-----------------------------------SCEEE
T ss_pred CC-----------------cEEEEEECCCCCcEEEEEcCC-----------------------------------CcEEE
Confidence 11 145788999999755444322 23688
Q ss_pred EEcCCCceEEEEcc--cCC------CCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCc
Q 004067 290 VSAAGGPVSWMDLQ--CGG------TDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 361 (776)
Q Consensus 290 ~d~~~~~~~~l~~~--~~~------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 361 (776)
||+.+++....... .+. .....+...+..++|+|||+.++... .+..|.+||+.+++...........
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~ 289 (408)
T 4a11_B 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG----TDNRMRLWNSSNGENTLVNYGKVCN 289 (408)
T ss_dssp EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCBCCCCCCCCCC
T ss_pred EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec----CCCeEEEEECCCCccceeccccccc
Confidence 88876642222111 000 01235667789999999999887765 3446999999988754332211100
Q ss_pred eeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 362 WVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
-......+.. .... ..+++. ..++ .|++|++.+++ ...+..+...+..+. |+++|+.|+.. +.++.
T Consensus 290 ~~~~~~~~~~-----~~~~~~~~~~~-~~~~--~i~v~d~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~-~~dg~-- 357 (408)
T 4a11_B 290 NSKKGLKFTV-----SCGCSSEFVFV-PYGS--TIAVYTVYSGEQITMLKGHYKTVDCCV-FQSNFQELYSG-SRDCN-- 357 (408)
T ss_dssp CCSSCCCCEE-----CCSSSSCEEEE-EETT--EEEEEETTTCCEEEEECCCSSCEEEEE-EETTTTEEEEE-ETTSC--
T ss_pred cccccceeEE-----ecCCCceEEEE-ecCC--EEEEEECcCCcceeeeccCCCeEEEEE-EcCCCCEEEEE-CCCCe--
Confidence 0000000100 1112 234444 3445 89999987665 445555556666654 99999976544 44443
Q ss_pred eeEEEEEe
Q 004067 440 SHLYCAKL 447 (776)
Q Consensus 440 ~~l~~~~~ 447 (776)
+.+|.+..
T Consensus 358 i~iw~~~~ 365 (408)
T 4a11_B 358 ILAWVPSL 365 (408)
T ss_dssp EEEEEECC
T ss_pred EEEEeCCC
Confidence 78888874
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-12 Score=136.18 Aligned_cols=282 Identities=13% Similarity=0.172 Sum_probs=181.5
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
+-+.||+++ .||... ...|++||+.+|+..++..... +...|.++.|+|
T Consensus 109 ~~l~wS~~n-~lAvgl------d~tV~lWd~~tg~~~~~~~~~~---------------------~~~~V~sv~fsp--- 157 (420)
T 4gga_A 109 NLVDWSSGN-VLAVAL------DNSVYLWSASSGDILQLLQMEQ---------------------PGEYISSVAWIK--- 157 (420)
T ss_dssp BCEEECTTS-EEEEEE------TTEEEEEETTTCCEEEEEECCS---------------------TTCCEEEEEECT---
T ss_pred eeEEECCCC-EEEEEe------CCEEEEEECCCCCEEEEEEecC---------------------CCCcEEEEEECC---
Confidence 457999875 677433 2469999999999876654211 123588999999
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCcee
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
||++|+.. .++.|.+||+.+++....+..+. .....+++|++.|+..+. ..+++++.........+..+..
T Consensus 158 dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~---~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~---- 230 (420)
T 4gga_A 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS---ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS---- 230 (420)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS----
T ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC---CceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccc----
Confidence 99999976 78899999999988763444332 233456678888877765 4688888876554333222211
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
..+..+.|+|+|+.++....+ ..+.+|+..++
T Consensus 231 ------------~~~~~~~~~~~g~~l~s~~~D------------------------------------~~v~i~~~~~~ 262 (420)
T 4gga_A 231 ------------QEVCGLRWAPDGRHLASGGND------------------------------------NLVNVWPSAPG 262 (420)
T ss_dssp ------------SCEEEEEECTTSSEEEEEETT------------------------------------SCEEEEESSCC
T ss_pred ------------cceeeeeecCCCCeeeeeecc------------------------------------ccceEEeeccc
Confidence 013467899999998876643 23688888776
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
+....... ....+...+..++|+|++..++.... +..+..|.+||+.++.............. ..|.+
T Consensus 263 ~~~~~~~~----~~~~~~~~V~~~~~~p~~~~~la~~~-gs~D~~I~iwd~~t~~~~~~~~~~~~v~~---~~~~~---- 330 (420)
T 4gga_A 263 EGGWVPLQ----TFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAVDAHSQVCS---ILWSP---- 330 (420)
T ss_dssp SSCSCCSE----EECCCSSCEEEEEECTTCTTEEEEEE-CTTTCEEEEEETTTTEEEEEEECSSCEEE---EEEET----
T ss_pred cccceeee----eecccCCceeeeeeCCCcccEEEEEe-ecCCCEEEEEeCCccccceeeccccceee---eeecC----
Confidence 53211000 01455677889999998874433322 23456799999999987655544332111 11222
Q ss_pred ccccCCeEEEEec-cCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 376 VTKYSGGFIWASE-KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 376 ~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+++.++..+. .+| .|++|+..+++ ...|..+...|..+. |+|||++|+ ++..++. +.||++.
T Consensus 331 ---~~~~lv~~sg~~d~--~I~iwd~~~~~~v~~l~gH~~~V~~l~-~spdg~~l~-S~s~D~t--vriWdv~ 394 (420)
T 4gga_A 331 ---HYKELISGHGFAQN--QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVA-SAAADET--LRLWRCF 394 (420)
T ss_dssp ---TTTEEEEEECTTTC--CEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSCEE-EEETTTE--EEEECCS
T ss_pred ---CCCeEEEEEecCCC--EEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCCEEE-EEecCCe--EEEEECC
Confidence 2333444432 344 89999976654 566777777777765 999999654 4555543 7888775
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-12 Score=133.27 Aligned_cols=279 Identities=9% Similarity=0.036 Sum_probs=176.1
Q ss_pred eeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCC-CCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEE
Q 004067 128 TRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSS-SSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQL 205 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~l 205 (776)
+...||+ ++ .|++..++.|++||+++++....++. .....+..+.|+|||+.|+..+. +.|.+|++.+++..+.
T Consensus 29 ~~l~WS~---~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 29 NLVDWSS---GN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp BCEEECT---TS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eEEEECC---CC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 4578999 87 78888999999999999987633332 22234778999999999988775 5799999999876554
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
..... .....++++++.|+....+ .
T Consensus 105 ~~~h~-------------------~~~~~~~~~~~~l~s~~~~------------------------------------~ 129 (318)
T 4ggc_A 105 MTSHS-------------------ARVGSLSWNSYILSSGSRS------------------------------------G 129 (318)
T ss_dssp EECCS-------------------SCEEEEEEETTEEEEEETT------------------------------------S
T ss_pred ecCcc-------------------ceEEEeecCCCEEEEEecC------------------------------------C
Confidence 33322 1134467778877655432 2
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE--EEE---eccC
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV--ILV---EELD 360 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~--l~~---~~~~ 360 (776)
.+.+++..++....... ..+...+....|+++|+.++... .+..|.+||+.+++... +.. ....
T Consensus 130 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 198 (318)
T 4ggc_A 130 HIHHHDVRVAEHHVATL-------SGHSQEVCGLRWAPDGRHLASGG----NDNLVNVWPSAPGEGGWVPLQTFTQHQGA 198 (318)
T ss_dssp EEEEEETTSSSCEEEEE-------ECCSSCEEEEEECTTSSEEEEEE----TTSCEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred ceEeeecCCCceeEEEE-------cCccCceEEEEEcCCCCEEEEEe----cCcceeEEECCCCcccccceeeecccCCc
Confidence 35666666554433322 35566788899999999877665 34568999998765321 111 1111
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCcee
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
... ..+.+ .+..++..........|.+|+...............+.... ++++++.++..+.... ..+
T Consensus 199 v~~---~~~~~-------~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~sg~~d-~~i 266 (318)
T 4ggc_A 199 VKA---VAWCP-------WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHGFAQ-NQL 266 (318)
T ss_dssp EEE---EEECT-------TSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEE-EETTTTEEEEEECTTT-CCE
T ss_pred eEE---EEecC-------CCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeee-ecccccceEEEEEcCC-CEE
Confidence 110 01111 23334444433334489999988776555544444455444 8899998777664322 236
Q ss_pred eEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 441 HLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 441 ~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
.+|.+. .+. .+..+..+. .+..++|+|||+.|+... .+ ..|.+|++.+
T Consensus 267 ~iwd~~---~~~----~~~~l~gH~~~V~~l~~spdg~~l~S~s-~D---~~v~iWd~~~ 315 (318)
T 4ggc_A 267 VIWKYP---TMA----KVAELKGHTSRVLSLTMSPDGATVASAA-AD---ETLRLWRCFE 315 (318)
T ss_dssp EEEETT---TCC----EEEEECCCSSCEEEEEECTTSSCEEEEE-TT---TEEEEECCSC
T ss_pred EEEECC---CCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-cC---CeEEEEECCC
Confidence 666554 343 566676654 467889999999887553 32 3588888744
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=150.94 Aligned_cols=244 Identities=12% Similarity=0.052 Sum_probs=159.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++||-.+.. ..|.+|+.++ ....+. +.. .++ ...+.+++|||
T Consensus 88 V~~vawSPdG~~LAs~s~d-----g~V~iwd~~~-~l~~l~-~~~------~~~-------------~~sv~svafSP-- 139 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNN-----GNVSVFKDNK-MLTNLD-SKG------NLS-------------SRTYHCFEWNP-- 139 (588)
T ss_dssp EEEEEECSSSSCEEEEETT-----SCEEEEETTE-EEEECC-CSS------CST-------------TTCEEEEEECS--
T ss_pred EEEEEECCCCCEEEEEeCC-----CcEEEEeCCc-eeeecc-CCC------ccc-------------cccEEEEEEcC--
Confidence 5899999999999976653 3599999654 222222 111 000 12588999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCcc-------ceecC---CCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee--
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKP-------ELKLS---SSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR-- 203 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~-------~~~l~---~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~-- 203 (776)
||+.|+.. .++.|.+||+.++.. ...+. .+....+...+||||| .++...++.+++|+++++...
T Consensus 140 -DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~ 217 (588)
T 2j04_A 140 -IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPV 217 (588)
T ss_dssp -SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCC
T ss_pred -CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccc
Confidence 99999987 689999999999864 11332 1122358889999999 555555678999999988743
Q ss_pred --EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 204 --QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 204 --~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.+...... .+.+++|+ |+.|+... +
T Consensus 218 ~~tL~~~h~~-----------------~V~svaFs--g~~LASa~-~--------------------------------- 244 (588)
T 2j04_A 218 SRMIQNASRR-----------------KITDLKIV--DYKVVLTC-P--------------------------------- 244 (588)
T ss_dssp EEEEECCCSS-----------------CCCCEEEE--TTEEEEEC-S---------------------------------
T ss_pred eeeecccccC-----------------cEEEEEEE--CCEEEEEe-C---------------------------------
Confidence 23211110 15578899 67777654 1
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEe--ccCCeEEEEEEeecCceE-EEEEEECCCCceEEEEEec
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW--MHGNILTAQVLNRSQTKL-KVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~-~l~~~d~~~g~~~~l~~~~ 358 (776)
..|++||+++++...+. .++...+..++| ||||+.++.+. .++ .||..| . +.
T Consensus 245 ---~tIkLWd~~~~~~~~~~--------~gh~~~V~~va~~~s~d~~~La~a~----edG~klw~~d----~---~~--- 299 (588)
T 2j04_A 245 ---GYVHKIDLKNYSISSLK--------TGSLENFHIIPLNHEKESTILLMSN----KTSYKVLLED----E---LH--- 299 (588)
T ss_dssp ---SEEEEEETTTTEEEEEE--------CSCCSCCCEEEETTCSSCEEEEECS----SCEEEEEESS----S---EE---
T ss_pred ---CeEEEEECCCCeEEEEE--------cCCCceEEEEEeeeCCCCCEEEEEc----CCCCEEEeec----c---EE---
Confidence 35899999999886553 357778888999 99998776654 223 355544 1 11
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
|+| ++.+.... ...+++|+..++....+.. .+.+.+.. +||||+.++..+
T Consensus 300 ----------~sp--------d~~l~a~~----d~~v~lW~~~g~~l~~~~~-~~~I~~va-~SPdG~~lA~~~ 349 (588)
T 2j04_A 300 ----------VTA--------DNIIAPYL----EKKFKKWSTIWNEFNNYET-TLVIHGIS-LSPDGYSIAIVY 349 (588)
T ss_dssp ----------EEC--------CCSSHHHH----HHHHHHTTTTTTSSSSSCC-EEEEEEEE-ECTTSSEEEEEE
T ss_pred ----------ECC--------CceEEEEc----CCEEEEEECCCCceeeecc-ceEEEEEE-ECCCCCEEEEEE
Confidence 112 11111111 2367788888877665544 55566654 999999766554
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=138.86 Aligned_cols=284 Identities=12% Similarity=0.053 Sum_probs=171.9
Q ss_pred eEEEeecCCCceEEEEe--CCCcEEEEeCCCCcc----ceecCCCCCCCccCceeCC-CCCEEEEEEC-CcEEEEecCCC
Q 004067 129 RYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKP----ELKLSSSSCSPVIDPHLSS-DGTMIAFVRD-CELHVLNLLIN 200 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~----~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~-~~l~~~~l~~g 200 (776)
...++| +...+++. .++.|++|++..... ...+..+. ..+..+.|+| |++.|+..+. +.|.+|++.++
T Consensus 39 ~~~~~~---~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 39 FCAVNP---KFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT-APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SEEECS---SEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCS-SCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cEEECC---CeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCC-CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 456777 77666653 578999999965421 11233333 3488899999 8998888875 57999999887
Q ss_pred ce--------eEEeeCCCCCceecCCcccceecccCCcceEEECCCCC-eEEEEEecCCCCCeEEEeecCCCCCCCCCcc
Q 004067 201 EQ--------RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSK-FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE 271 (776)
Q Consensus 201 ~~--------~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (776)
.. ..+.... ..+..+.|+|||+ .|+..+.+
T Consensus 115 ~~~~~~~~~~~~~~~h~------------------~~v~~~~~~p~~~~~l~s~~~d----------------------- 153 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHT------------------KRVGIVAWHPTAQNVLLSAGCD----------------------- 153 (402)
T ss_dssp CCSSCBCSCSEEEECCS------------------SCEEEEEECSSBTTEEEEEETT-----------------------
T ss_pred CCccccCCceEEecCCC------------------CeEEEEEECcCCCCEEEEEcCC-----------------------
Confidence 32 2222111 1255789999995 55544422
Q ss_pred eecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 272 DHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 272 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
..|.+||+.+++....-.. ..+...+..++|+|||+.|+..+ .+..|.+||+.+++.
T Consensus 154 -------------g~i~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 154 -------------NVILVWDVGTGAAVLTLGP------DVHPDTIYSVDWSRDGALICTSC----RDKRVRVIEPRKGTV 210 (402)
T ss_dssp -------------SCEEEEETTTTEEEEEECT------TTCCSCEEEEEECTTSSCEEEEE----TTSEEEEEETTTTEE
T ss_pred -------------CEEEEEECCCCCccEEEec------CCCCCceEEEEECCCCCEEEEEe----cCCcEEEEeCCCCce
Confidence 2479999998876543210 23566789999999999777765 455799999998876
Q ss_pred EEEEE-eccCceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCcee-e-ccc-cCCeEEEEEEeecCCCc
Q 004067 352 KVILV-EELDSWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTCL-G-PIT-EGDWMVEQIVGVNEASG 426 (776)
Q Consensus 352 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~~-~-~lt-~~~~~~~~~~~~s~dg~ 426 (776)
..... ...... ...-.|.| ++.++++. .......|++||+.+++. . ... .+...+..+ .|+++|+
T Consensus 211 ~~~~~~~~~~~~-~~~~~~~~--------~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~ 280 (402)
T 2aq5_A 211 VAEKDRPHEGTR-PVHAVFVS--------EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP-FFDPDTN 280 (402)
T ss_dssp EEEEECSSCSSS-CCEEEECS--------TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE-EEETTTT
T ss_pred eeeeccCCCCCc-ceEEEEcC--------CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE-EEcCCCC
Confidence 54432 111100 00011222 23345444 112334999999876542 1 111 122234444 4999999
Q ss_pred EEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCc
Q 004067 427 QVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 501 (776)
Q Consensus 427 ~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~ 501 (776)
.+++.+..++. +.+|.+.. +......+..+.....+..+.|+||+..++. . . ..+.++++.++.
T Consensus 281 ~l~~~g~~dg~--i~i~d~~~---~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s---~-~--~~~~~~~l~~~~ 344 (402)
T 2aq5_A 281 IVYLCGKGDSS--IRYFEITS---EAPFLHYLSMFSSKESQRGMGYMPKRGLEVN---K-C--EIARFYKLHERK 344 (402)
T ss_dssp EEEEEETTCSC--EEEEEECS---STTCEEEEEEECCSSCCSEEEECCGGGSCGG---G-T--EEEEEEEEETTE
T ss_pred EEEEEEcCCCe--EEEEEecC---CCcceEeecccccCCcccceEEeccccccee---c-c--eeEEEEEcCCCc
Confidence 88888766553 77887763 3211112233333345678899999987653 2 1 156777776654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=134.80 Aligned_cols=262 Identities=11% Similarity=0.016 Sum_probs=155.3
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
+.++++++++.++-... ..+|++||+++++......... ......+.|+|
T Consensus 3 ~g~~~~~~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~----------------------~~~~~~~~~s~--- 52 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPD----------------------KFGPGTAMMAP--- 52 (349)
T ss_dssp -CCCCCTTCEEEEEEET-----TTEEEEEETTTTEEEEEEECSS----------------------CCSSCEEEECT---
T ss_pred ccccccCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEecCC----------------------CCCCceeEECC---
Confidence 56778988886664433 2479999999988755443111 01456789999
Q ss_pred CceEEEEe--CCCcEEEEeCCCCccceecCCCC-----CCCccCceeCCCCCEEEEEE-------------CCcEEEEec
Q 004067 138 KKKIIMVP--LPDGIYFQDLSCSKPELKLSSSS-----CSPVIDPHLSSDGTMIAFVR-------------DCELHVLNL 197 (776)
Q Consensus 138 dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~la~~~-------------~~~l~~~~l 197 (776)
||+++++. .++.|++||+.+++....+.... ......+.|||||+.|++.. .+.|+++++
T Consensus 53 dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~ 132 (349)
T 1jmx_B 53 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 132 (349)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence 99988776 46789999999887663333221 11256789999999998887 367999999
Q ss_pred CCCceeEE---eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 198 LINEQRQL---THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 198 ~~g~~~~l---t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
++++.... ...+. .+..++|+|||+ |+... . . ...+....... ...+.
T Consensus 133 ~~~~~~~~~~~~~~~~------------------~~~~~~~s~dg~-l~~~~-~--~--i~~~d~~~~~~-----~~~~~ 183 (349)
T 1jmx_B 133 ADGLEAKPVRTFPMPR------------------QVYLMRAADDGS-LYVAG-P--D--IYKMDVKTGKY-----TVALP 183 (349)
T ss_dssp GGGGGBCCSEEEECCS------------------SCCCEEECTTSC-EEEES-S--S--EEEECTTTCCE-----EEEEC
T ss_pred CCccccceeeeccCCC------------------cccceeECCCCc-EEEcc-C--c--EEEEeCCCCce-----ecccc
Confidence 98654321 11111 134678999999 55432 1 1 22221111110 00000
Q ss_pred -----------------CCCCCCCC----------------------CeEEEEEEEcCCCceEEEEcccCCCCCCCCcce
Q 004067 275 -----------------YPFAGASN----------------------VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEY 315 (776)
Q Consensus 275 -----------------~~~~g~~~----------------------~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 315 (776)
++...... ....+..++..+++...+... .....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 256 (349)
T 1jmx_B 184 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-------DLTEL 256 (349)
T ss_dssp STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-------ECSSC
T ss_pred ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-------cCCCc
Confidence 00000000 112233478888888777653 23446
Q ss_pred EEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceE
Q 004067 316 LARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRH 394 (776)
Q Consensus 316 ~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 394 (776)
...+.||| ||+.++.. ...|++||+++++...........+. -.|++ ++ +.++++..++ .
T Consensus 257 ~~~~~~sp~dg~~l~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~s~-------dg-~~l~~~~~~~--~ 317 (349)
T 1jmx_B 257 YFTGLRSPKDPNQIYGV------LNRLAKYDLKQRKLIKAANLDHTYYC---VAFDK-------KG-DKLYLGGTFN--D 317 (349)
T ss_dssp EEEEEECSSCTTEEEEE------ESEEEEEETTTTEEEEEEECSSCCCE---EEECS-------SS-SCEEEESBSS--E
T ss_pred ceeeEecCCCCCEEEEE------cCeEEEEECccCeEEEEEcCCCCccc---eEECC-------CC-CEEEEecCCC--e
Confidence 77899999 99977665 33699999999887554432221111 11222 22 3444454444 8
Q ss_pred EEEEeCCCce
Q 004067 395 LYLHDINGTC 404 (776)
Q Consensus 395 l~~~~~~g~~ 404 (776)
|++||+++++
T Consensus 318 v~v~d~~~~~ 327 (349)
T 1jmx_B 318 LAVFNPDTLE 327 (349)
T ss_dssp EEEEETTTTE
T ss_pred EEEEeccccc
Confidence 9999987765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-13 Score=146.12 Aligned_cols=323 Identities=10% Similarity=-0.008 Sum_probs=183.4
Q ss_pred cCCCceeEcCCC---------CEEEEEeCCC--------------CcCcceEEEEecCCCceE-----EeecCCCCCCCC
Q 004067 55 VAPTSIGFSPDD---------NLITYLLSPD--------------HSLSRKVFSFDPKTCKQE-----LVFSPPDGGLDE 106 (776)
Q Consensus 55 ~~~~~~~~SpDG---------~~ia~~~~~~--------------~~~~~~l~~~~~~~~~~~-----~l~~~~~~~~~~ 106 (776)
..+..++|+||+ ++||-..... +.....|.+|++++++.. .+..+
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~------- 206 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS------- 206 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEEC-------
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec-------
Confidence 346899999998 7888654321 223457889999887642 12221
Q ss_pred CCCCHHHHHHHHHHHHhcCCeeeEEEeec---CCCceEEEEe-CCCcEEEEeCCCCccc-----------eecCCCCCCC
Q 004067 107 NNISPEEKLRRERLRERGLGVTRYEWVKT---SSKKKIIMVP-LPDGIYFQDLSCSKPE-----------LKLSSSSCSP 171 (776)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~sp~---~~dg~~l~~~-~~~~l~~~d~~~~~~~-----------~~l~~~~~~~ 171 (776)
...+....|+|. ++|++.|+.. .++.|.+||+.+++.. ..+.... ..
T Consensus 207 -----------------~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-~~ 268 (524)
T 2j04_B 207 -----------------FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD-SL 268 (524)
T ss_dssp -----------------CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-TC
T ss_pred -----------------CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC-CC
Confidence 135888999991 1125778754 7889999999876421 0222222 34
Q ss_pred ccCceeCCCCCEEEEEEC-CcEEEEecCCCcee-EEeeCCCCCceecCCcccceecccCCcceE--EECCCC-CeEEEEE
Q 004067 172 VIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGY--WWSLDS-KFIAFTQ 246 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~--~wspDg-~~l~~~~ 246 (776)
+..+.|+|++ .|+..+. +.|.+||+.++... ........ .+..+ +|+||| +.|+..+
T Consensus 269 v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~-----------------~V~sv~~~~s~~g~~~laS~S 330 (524)
T 2j04_B 269 ITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS-----------------YILSVSTAYSDFEDTVVSTVA 330 (524)
T ss_dssp EEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSS-----------------CEEEEEEECCTTSCCEEEEEE
T ss_pred EEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccc-----------------cEEEEEEEcCCCCCeEEEEec
Confidence 7789999875 5666554 67999999977432 21111111 13455 589998 6677666
Q ss_pred ecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCC
Q 004067 247 VDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGN 325 (776)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg 325 (776)
.| ..|.+||+.+++... +.. ......+..++||||+
T Consensus 331 ~D------------------------------------~tvklWD~~~~~~~~~~~~-------~~~~~~v~~v~fsp~~ 367 (524)
T 2j04_B 331 VD------------------------------------GYFYIFNPKDIATTKTTVS-------RFRGSNLVPVVYCPQI 367 (524)
T ss_dssp TT------------------------------------SEEEEECGGGHHHHCEEEE-------ECSCCSCCCEEEETTT
T ss_pred cC------------------------------------CeEEEEECCCCCccccccc-------ccccCcccceEeCCCc
Confidence 43 358999998765322 211 0011125668999999
Q ss_pred eEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 326 ILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 326 ~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
+.++... .+..|.+||+.++.. ..+..+....+.. .|+| ++.++++...+| .|.+|++.++.
T Consensus 368 ~~l~s~~----~d~tv~lwd~~~~~~~~~l~gH~~~V~sv---a~Sp--------~g~~l~Sgs~Dg--tv~lwd~~~~~ 430 (524)
T 2j04_B 368 YSYIYSD----GASSLRAVPSRAAFAVHPLVSRETTITAI---GVSR--------LHPMVLAGSADG--SLIITNAARRL 430 (524)
T ss_dssp TEEEEEC----SSSEEEEEETTCTTCCEEEEECSSCEEEE---ECCS--------SCCBCEEEETTT--EEECCBSCSST
T ss_pred CeEEEeC----CCCcEEEEECcccccceeeecCCCceEEE---EeCC--------CCCeEEEEECCC--EEEEEechHhh
Confidence 8765543 334699999988775 5566665554433 2444 233556666777 88889986643
Q ss_pred eeccccC-----CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcC-
Q 004067 405 LGPITEG-----DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMR- 477 (776)
Q Consensus 405 ~~~lt~~-----~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~- 477 (776)
...+... ...+..+ .|+|+|+.+-+ .+. ..++.... .|. .+..|..+. .+..++|+||+.
T Consensus 431 ~~~~~~~~~~~~~~~v~~v-~~sp~g~~~~~---~~~---~~~~~~~~--~g~----~~~~l~gh~~~V~~Vafsp~~~~ 497 (524)
T 2j04_B 431 LHGIKNSSATQKSLRLWKW-DYSIKDDKYRI---DSS---YEVYPLTV--NDV----SKAKIDAHGINITCTKWNETSAG 497 (524)
T ss_dssp TTCC------CCCCEEEEC-BCCSSSCEEEE---CCC---CCCCC-------------------CCCSCCCEEECCSTTT
T ss_pred ccccccCccceeeeEEEEe-ccCCCCCeEEc---cCC---ceeccccc--CCc----ceeeecCCCceEEEEECCCCCCc
Confidence 2222111 1123333 48999984422 221 23333332 222 344555443 467899999965
Q ss_pred --EEEEEeeCCCCCCEEEEEEc
Q 004067 478 --NFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 478 --~l~~~~~~~~~~~~i~~~~~ 497 (776)
.++..... +.|.++++
T Consensus 498 ~~~lAsg~~~----g~vrlw~l 515 (524)
T 2j04_B 498 GKCYAFSNSA----GLLTLEYL 515 (524)
T ss_dssp TTEEEEECTT----SEEEEEEC
T ss_pred cHHHHhhccC----ceEEEEEc
Confidence 55554332 46888776
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.9e-12 Score=128.07 Aligned_cols=282 Identities=13% Similarity=0.171 Sum_probs=179.9
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
+-+.||||+ .||... ...|++||+++|+..++..... +...+....|+|
T Consensus 29 ~~l~WS~~~-~lAvg~------D~tV~iWd~~tg~~~~~~~~~~---------------------~~~~V~~v~~~~--- 77 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVAL------DNSVYLWSASSGDILQLLQMEQ---------------------PGEYISSVAWIK--- 77 (318)
T ss_dssp BCEEECTTS-EEEEEE------TTEEEEEETTTCCEEEEEECCS---------------------TTCCEEEEEECT---
T ss_pred eEEEECCCC-EEEEEe------CCEEEEEECCCCCEEEEEEecC---------------------CCCeEEEEEECC---
Confidence 457999997 677533 2469999999998766553211 123588999999
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCcee
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
||++|+.. .++.|.+||+.+++....+.... .....++++++.++..... .+..++..++.....+..+..
T Consensus 78 ~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~---~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~---- 150 (318)
T 4ggc_A 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS---ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS---- 150 (318)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCS---SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS----
T ss_pred CCCEEEEEECCCcEEEeecCCceeEEEecCcc---ceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCcc----
Confidence 99999876 78899999999998763443322 3345778888888877654 566777766544333322211
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
.......|+++|+.|+....+ ..|.+||+.++
T Consensus 151 ------------~~~~~~~~~~~~~~l~s~~~d------------------------------------~~i~iwd~~~~ 182 (318)
T 4ggc_A 151 ------------QEVCGLRWAPDGRHLASGGND------------------------------------NLVNVWPSAPG 182 (318)
T ss_dssp ------------SCEEEEEECTTSSEEEEEETT------------------------------------SCEEEEESSCB
T ss_pred ------------CceEEEEEcCCCCEEEEEecC------------------------------------cceeEEECCCC
Confidence 013467799999988876543 23788999876
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
+....... ........+..+.|+|++..++.... +.....|.+||..++.............. ..|.+
T Consensus 183 ~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~~~~~~v~~---~~~~~---- 250 (318)
T 4ggc_A 183 EGGWVPLQ----TFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAVDAHSQVCS---ILWSP---- 250 (318)
T ss_dssp TTBSCCSE----EECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEEECSSCEEE---EEEET----
T ss_pred ccccccee----eecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccccceeeeee---eeecc----
Confidence 53211000 01345567888999998874443322 22456799999988877665544333111 11222
Q ss_pred ccccCCeEEEEe-ccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 376 VTKYSGGFIWAS-EKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 376 ~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
.++.++..+ ..++ .|++||+.+++ ...+..+...|..+. |+|||+.|+ +++.++. +.||++.
T Consensus 251 ---~~~~~~~~sg~~d~--~i~iwd~~~~~~~~~l~gH~~~V~~l~-~spdg~~l~-S~s~D~~--v~iWd~~ 314 (318)
T 4ggc_A 251 ---HYKELISGHGFAQN--QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVA-SAAADET--LRLWRCF 314 (318)
T ss_dssp ---TTTEEEEEECTTTC--CEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSCEE-EEETTTE--EEEECCS
T ss_pred ---cccceEEEEEcCCC--EEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCCEEE-EEecCCe--EEEEECC
Confidence 233344443 2345 89999987654 556666666777765 999999654 5555543 7888763
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-12 Score=136.13 Aligned_cols=292 Identities=11% Similarity=0.034 Sum_probs=177.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
..+....|+| ||++|+.. .++.|.+||+.+++....+..... .+...+|+|||+.|+.... +.+.+|++.++..
T Consensus 67 ~~V~~~~~sp---~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~-~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 67 GKVYSLDWTP---EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP-WVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142 (380)
T ss_dssp SCEEEEEECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECCCT-TCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred cEEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCccceEEecCCC-CEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence 3688999999 99999876 788999999998876634544433 4788999999999888764 4688888875432
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCC-eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSK-FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
..- .........+.. +.+..+.|+|++. .|+..+.|
T Consensus 143 ~~~--~~~~~~~~~gh~--------~~v~~~~~~~~~~~~l~s~s~D--------------------------------- 179 (380)
T 3iz6_a 143 RDG--NMPVSRVLTGHK--------GYASSCQYVPDQETRLITGSGD--------------------------------- 179 (380)
T ss_dssp CCC--SSTTCCBCCCCS--------SCCCCCBCCSSSSSCEEEECTT---------------------------------
T ss_pred ccC--CccceeeccCCC--------cceEEEEEecCCCCEEEEECCC---------------------------------
Confidence 100 000000111111 1244667899865 45544432
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCC-Cc-eEEEEEec
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKT-GQ-RKVILVEE 358 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~-g~-~~~l~~~~ 358 (776)
..|.+||+.+++....... .....+...+..+.|+| |++.++..+ .+..|.+||+.. +. .+.+..+.
T Consensus 180 ---~~i~~wd~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~sgs----~D~~v~~wd~~~~~~~~~~~~~h~ 249 (380)
T 3iz6_a 180 ---QTCVLWDVTTGQRISIFGS---EFPSGHTADVLSLSINSLNANMFISGS----CDTTVRLWDLRITSRAVRTYHGHE 249 (380)
T ss_dssp ---SCEEEECTTTCCEEEEECC---CSSSSCCSCEEEEEECSSSCCEEEEEE----TTSCEEEEETTTTCCCCEEECCCS
T ss_pred ---CcEEEEEcCCCcEEEEeec---ccCCCCccCeEEEEeecCCCCEEEEEE----CCCeEEEEECCCCCcceEEECCcC
Confidence 3478999998876543211 00134566788899977 777776665 445699999973 33 33333333
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecc-ccCC-------eEEEEEEeecCCCcEEEE
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI-TEGD-------WMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~l-t~~~-------~~~~~~~~~s~dg~~i~~ 430 (776)
...... .|+| ++..+++...+| .|.+||+.++...+. .... ..+..+ .|+++|+.++.
T Consensus 250 ~~v~~v---~~~p--------~~~~l~s~s~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~ 315 (380)
T 3iz6_a 250 GDINSV---KFFP--------DGQRFGTGSDDG--TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV-AFSISGRLLFA 315 (380)
T ss_dssp SCCCEE---EECT--------TSSEEEEECSSS--CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE-EECSSSSEEEE
T ss_pred CCeEEE---EEec--------CCCeEEEEcCCC--eEEEEECCCCcEEEEecccccccccccCceEEE-EECCCCCEEEE
Confidence 332211 1333 234566666777 899999887754332 2211 113343 49999997655
Q ss_pred EEccCCCceeeEEEEEeCCCCCCccccceee----cCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCc
Q 004067 431 TGTLDGPLESHLYCAKLYPDWNHTLEAPVKL----TNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 501 (776)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l----~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~ 501 (776)
. ..++. +.+|.+.. +. ....+ ..+. .+..+.|||||+.|+..... ..|.+|++..+.
T Consensus 316 g-~~dg~--i~vwd~~~---~~----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----~~i~iW~~~~~~ 377 (380)
T 3iz6_a 316 G-YSNGD--CYVWDTLL---AE----MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD----KNLKIWAFSGHR 377 (380)
T ss_dssp E-CTTSC--EEEEETTT---CC----EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT----SCEEEEECCSSS
T ss_pred E-ECCCC--EEEEECCC---Cc----eEEEEecccCCCCCceEEEEECCCCCEEEEeeCC----CCEEEEecCCCc
Confidence 4 33432 66776532 22 22333 2222 36688999999987765432 358888886553
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=141.85 Aligned_cols=206 Identities=13% Similarity=0.075 Sum_probs=132.3
Q ss_pred CCceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh------CCcEEEEE
Q 004067 522 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS------KGILVWKL 594 (776)
Q Consensus 522 ~~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~------~G~~v~~~ 594 (776)
.+.+.+++.+. -|....+++|.|+++....+++|+|+++||... |. ......+.+.. .+++||++
T Consensus 10 ~~v~~~~~~S~~l~~~r~~~VylP~~y~~~~~~yPVlylldG~~~-------f~-~~~~~~~~l~~~~~~~~~~~IvV~i 81 (331)
T 3gff_A 10 VEYQSKRLESRLLKETREYVIALPEGYAQSLEAYPVVYLLDGEDQ-------FD-HMASLLQFLSQGTMPQIPKVIIVGI 81 (331)
T ss_dssp -CEEEEEEEETTTTEEEEEEEECCTTGGGSCCCEEEEEESSHHHH-------HH-HHHHHHHHHTCSSSCSSCCCEEEEE
T ss_pred ceEEEEEEEecCCCCeEEEEEEeCCCCCCCCCCccEEEEecChhh-------hH-HHHHHHHHHHhhhhcCCCCEEEEEE
Confidence 35677778775 478899999999986433478999999999421 11 11112344443 36889998
Q ss_pred CCCCCCCCchhhhh--------------hhhhccCCccHHHHH--HHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 595 DNRGTARRGLKFEA--------------SIKHNCGRIDAEDQL--TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 595 d~rg~g~~~~~~~~--------------~~~~~~~~~~~~D~~--~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
+.. ....++.. ......+...+.+.+ +.+.++.++..++..+ +|+||||||++|++++.+
T Consensus 82 ~~~---~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~ 157 (331)
T 3gff_A 82 HNT---NRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRT 157 (331)
T ss_dssp CCS---SHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHT
T ss_pred CCC---CcccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHh
Confidence 762 11111100 000011111222322 3455666665566544 899999999999999999
Q ss_pred CCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCC-hhhhhccCCCcEEEEecCCCC-------ccChHHHH
Q 004067 659 FPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSS-VMHHVHKMKGKLLLVHGMIDE-------NVHFRHTA 730 (776)
Q Consensus 659 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~P~lii~G~~D~-------~v~~~~~~ 730 (776)
+|++|+++++.+|...|... ..+.... .+........|+++.+|+.|. .++...+.
T Consensus 158 ~p~~F~~~~~~S~~~w~~~~----------------~~~~~~~~~~~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~ 221 (331)
T 3gff_A 158 DRPLFSAYLALDTSLWFDSP----------------HYLTLLEERVVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNL 221 (331)
T ss_dssp TCSSCSEEEEESCCTTTTTT----------------HHHHHHHHHHHHCCCSSEEEEEEECCCSEETTTEECCHHHHHHH
T ss_pred CchhhheeeEeCchhcCChH----------------HHHHHHHHHhhcccCCCCeEEEEeCCCCCCCccchHHHHHHHHH
Confidence 99999999999998644211 0010000 011111234799999999998 56777889
Q ss_pred HHHHHHHHC---CCCeEEEEecCCCCCC
Q 004067 731 RLINALVAA---RKPYEILIFPDERHMP 755 (776)
Q Consensus 731 ~~~~~l~~~---~~~~~~~~~~~~~H~~ 755 (776)
++++.|++. |.++++.++|+++|..
T Consensus 222 ~l~~~Lk~~~~~g~~~~~~~~pg~~H~s 249 (331)
T 3gff_A 222 AFADKLTKLAPKGLGFMAKYYPEETHQS 249 (331)
T ss_dssp HHHHHHHHHCCTTEEEEEEECTTCCTTT
T ss_pred HHHHHHHhccCCCceEEEEECCCCCccc
Confidence 999999886 5689999999999975
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-13 Score=141.02 Aligned_cols=297 Identities=7% Similarity=-0.024 Sum_probs=176.8
Q ss_pred CCeeeEEEeecCCCce--EEEEeCCCcEEEEeCCCCccceecCCC----CCCCccCceeCCC----CCEEEEEEC-CcEE
Q 004067 125 LGVTRYEWVKTSSKKK--IIMVPLPDGIYFQDLSCSKPELKLSSS----SCSPVIDPHLSSD----GTMIAFVRD-CELH 193 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~--~l~~~~~~~l~~~d~~~~~~~~~l~~~----~~~~~~~~~~SpD----g~~la~~~~-~~l~ 193 (776)
..+....|+|.++|+. .++...++.|.+||+.+++....+... ....+..+.|+|+ |+.|+.... +.|.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 4688999998433466 444456778999999977654233311 1234778999999 556776664 4799
Q ss_pred EEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 194 VLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 194 ~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
+|++.+++.......... .+..+.|+| |++.|+....+
T Consensus 99 v~d~~~~~~~~~~~~~~~-----------------~i~~~~~~~~~~~~l~s~~~d------------------------ 137 (366)
T 3k26_A 99 IINPITMQCIKHYVGHGN-----------------AINELKFHPRDPNLLLSVSKD------------------------ 137 (366)
T ss_dssp EECTTTCCEEEEEESCCS-----------------CEEEEEECSSCTTEEEEEETT------------------------
T ss_pred EEEchhceEeeeecCCCC-----------------cEEEEEECCCCCCEEEEEeCC------------------------
Confidence 999998876544332211 155789999 88888776543
Q ss_pred ecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 273 HAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
..|++||+.+++....-.. ...+...+..+.|+|||+.++... .+..|.+||+.+++..
T Consensus 138 ------------g~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 138 ------------HALRLWNIQTDTLVAIFGG-----VEGHRDEVLSADYDLLGEKIMSCG----MDHSLKLWRINSKRMM 196 (366)
T ss_dssp ------------SCEEEEETTTTEEEEEECS-----TTSCSSCEEEEEECTTSSEEEEEE----TTSCEEEEESCSHHHH
T ss_pred ------------CeEEEEEeecCeEEEEecc-----cccccCceeEEEECCCCCEEEEec----CCCCEEEEECCCCccc
Confidence 2489999998876554210 134667899999999999877665 3456999999876532
Q ss_pred EEEEec------------------cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee---------
Q 004067 353 VILVEE------------------LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL--------- 405 (776)
Q Consensus 353 ~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~--------- 405 (776)
...... ...+..... ....-..+.++ +.++++...+| .|.+|++..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~ 272 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI-HRNYVDCVRWL-GDLILSKSCEN--AIVCWKPGKMEDDIDKIKPSE 272 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS-CSSCCCEEEEE-TTEEEEECSSS--EEEEEEESSTTCCGGGCCTTC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccC-CcceEEEEEEc-CCEEEEEecCC--EEEEEeCCCccccccccccCC
Confidence 111100 000000000 00000012333 34566666677 788888765432
Q ss_pred ------eccccCCeEEEEEEeecCC--CcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC---CCeEEEEEcC
Q 004067 406 ------GPITEGDWMVEQIVGVNEA--SGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG---KGKHVAVLDH 474 (776)
Q Consensus 406 ------~~lt~~~~~~~~~~~~s~d--g~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~---~~~~~~~~sp 474 (776)
..+..+...+.. +.|+++ |+.|+.. ..++ .+.+|.+.. +.........+..+ ..+..+.|+|
T Consensus 273 ~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~l~~~-~~dg--~i~vwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 273 SNVTILGRFDYSQCDIWY-MRFSMDFWQKMLALG-NQVG--KLYVWDLEV---EDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp CCEEEEEEEECSSCCSSC-CCCEECTTSSEEEEE-CTTS--CEEEEECCS---SSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred cchheeccccccCCcEEE-EEEcCCCCCcEEEEE-ecCC--cEEEEECCC---CCCccccceEEcccccCCceEEEEeCC
Confidence 112222222222 347888 8865554 4443 367777653 32111122345544 4577899999
Q ss_pred CcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 475 NMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 475 dg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
||+.|+..... ..|++||+.
T Consensus 346 ~~~~l~s~~~d----g~i~iwd~~ 365 (366)
T 3k26_A 346 DSSILIAVCDD----ASIWRWDRL 365 (366)
T ss_dssp TSSEEEEEETT----SEEEEEEC-
T ss_pred CCCeEEEEeCC----CEEEEEEec
Confidence 99988876543 468888863
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=141.83 Aligned_cols=296 Identities=8% Similarity=0.016 Sum_probs=170.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCcc-----------ceecCCCC-----------CCCccCceeCCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKP-----------ELKLSSSS-----------CSPVIDPHLSSDG 181 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~-----------~~~l~~~~-----------~~~~~~~~~SpDg 181 (776)
..+....|+| ||++|+.. .++.|.+||+.+++. ...+..+. ...+..+.|+|++
T Consensus 29 ~~V~~v~~s~---~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 29 DIISTVEFNH---SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GSEEEEEECS---SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred CcEEEEEECC---CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4688999999 99999987 688999999998762 21343332 0347889999998
Q ss_pred --CEEEEEEC-CcEEEEecCCCceeEEeeCCCCC-c-e-----ec--CCcc-----c--------c-eecccCCcceEEE
Q 004067 182 --TMIAFVRD-CELHVLNLLINEQRQLTHGANGN-T-V-----TH--GLAE-----Y--------I-AQEEMDRKTGYWW 235 (776)
Q Consensus 182 --~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~-~-~-----~~--~~~~-----~--------~-~~~~~~~~~~~~w 235 (776)
..|+..+. +.|.+|++.++............ . . .. .++. + . .......+..++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 67776654 57999998876543211000000 0 0 00 0000 0 0 0112233668999
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC-CceEE-EEcccCCCCCCCCc
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GPVSW-MDLQCGGTDQNYDE 313 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~-l~~~~~~~~~~~~~ 313 (776)
+|||+.|+.. .+ ..|.+||+.+ ++... +... +.....+.
T Consensus 186 ~~~~~~l~s~-~d------------------------------------~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~ 226 (447)
T 3dw8_B 186 NSDYETYLSA-DD------------------------------------LRINLWHLEITDRSFNIVDIK--PANMEELT 226 (447)
T ss_dssp CTTSSEEEEE-CS------------------------------------SEEEEEETTEEEEEEEEEECC--CSSGGGCC
T ss_pred cCCCCEEEEe-CC------------------------------------CeEEEEECCCCCceeeeeecc--cccccccC
Confidence 9999988864 22 3578999984 33322 2111 11124566
Q ss_pred ceEEEEEeccCC-eEEEEEEeecCceEEEEEEECCCCce-----EEEEEecc------------CceeecccccccCCCC
Q 004067 314 EYLARVNWMHGN-ILTAQVLNRSQTKLKVLKFDIKTGQR-----KVILVEEL------------DSWVNLHDCFTPLDKG 375 (776)
Q Consensus 314 ~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~------------~~~~~~~~~~~~~~~~ 375 (776)
..+..++|+|+| +.++..+ .+..|.+||+.++.. +.+..+.. .... -.|+|
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~---- 295 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSS----SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISD---VKFSH---- 295 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEE----TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEE---EEECT----
T ss_pred cceEEEEECCCCCcEEEEEe----CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEE---EEECC----
Confidence 789999999999 7777666 345699999998874 44433322 1111 11222
Q ss_pred ccccCCeEEEEeccCCceEEEEEeCCC-ce-eeccccCCeE---------------EEEEEeecCCCcEEEEEEccCCCc
Q 004067 376 VTKYSGGFIWASEKTGFRHLYLHDING-TC-LGPITEGDWM---------------VEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~-~~~lt~~~~~---------------~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
++.++++... | .|.+||+.. ++ ...+..+... +.. +.|+++|++| +++..++
T Consensus 296 ----~g~~l~~~~~-~--~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~-~~~s~~~~~l-~s~s~dg-- 364 (447)
T 3dw8_B 296 ----SGRYMMTRDY-L--SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFE-CCWNGSDSVV-MTGSYNN-- 364 (447)
T ss_dssp ----TSSEEEEEES-S--EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCC-EEECTTSSEE-EEECSTT--
T ss_pred ----CCCEEEEeeC-C--eEEEEeCCCCccccceeeccccccccccccccccccccceE-EEECCCCCEE-EEeccCC--
Confidence 2334555444 5 899999864 43 3334333210 011 3599999976 4555444
Q ss_pred eeeEEEEEeCCCCCCccccceee----------------------------------cCCCCeEEEEEcCCcCEEEEEee
Q 004067 439 ESHLYCAKLYPDWNHTLEAPVKL----------------------------------TNGKGKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 439 ~~~l~~~~~~~~g~~~~~~~~~l----------------------------------~~~~~~~~~~~spdg~~l~~~~~ 484 (776)
.+.+|.+.. +. ...+ .....+..++|+|+|+.|+...+
T Consensus 365 ~v~iwd~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 436 (447)
T 3dw8_B 365 FFRMFDRNT---KR-----DITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT 436 (447)
T ss_dssp EEEEEETTT---CC-----EEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred EEEEEEcCC---Cc-----ceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec
Confidence 366665431 21 1111 11123556899999999988765
Q ss_pred CCCCCCEEEEEEc
Q 004067 485 SLDSPPRILLCSL 497 (776)
Q Consensus 485 ~~~~~~~i~~~~~ 497 (776)
+ .++++..
T Consensus 437 ~-----~~~~~~~ 444 (447)
T 3dw8_B 437 N-----NLYIFQD 444 (447)
T ss_dssp S-----CEEEEEC
T ss_pred c-----eeeeecc
Confidence 3 4777653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-11 Score=135.66 Aligned_cols=327 Identities=9% Similarity=-0.000 Sum_probs=192.6
Q ss_pred eEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
.+++||++|+..+.+ ..|.+||+.+++....... +...+....|+| ++.
T Consensus 127 ~~~~~~~~l~sgs~d-----g~i~vwd~~~~~~~~~~~~-----------------------h~~~V~~l~~~~---~~~ 175 (464)
T 3v7d_B 127 CLQFEDNYVITGADD-----KMIRVYDSINKKFLLQLSG-----------------------HDGGVWALKYAH---GGI 175 (464)
T ss_dssp EEEEETTEEEEEETT-----SCEEEEETTTTEEEEEECC-----------------------CSSCEEEEEECS---TTE
T ss_pred EEEECCCEEEEEcCC-----CcEEEEECCCCcEEEEEeC-----------------------CCcCEEEEEEcC---CCE
Confidence 567788888865542 4699999999886544421 124788999999 884
Q ss_pred EEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeC--CCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCceecC
Q 004067 141 IIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLS--SDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 141 ~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~S--pDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
.+.-..++.|.+||+.+++....+..... .+....|+ |+++.++..+. +.|.+|++.++.................
T Consensus 176 l~s~s~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNS-TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEeCCCCEEEEECCCCcEEEEECCCCC-ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 44445889999999999887634443333 47777777 67788877764 5799999988764332111110000000
Q ss_pred Cc----ccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 218 LA----EYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 218 ~~----~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+ ............-..++|+++.|+....+ ..|.+||+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d------------------------------------~~i~vwd~~ 298 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD------------------------------------NTLIVWDVA 298 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT------------------------------------SCEEEEETT
T ss_pred ccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC------------------------------------CeEEEEECC
Confidence 00 00000000001123457778877765533 247999999
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe-ccCceeecccccccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNLHDCFTPL 372 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~~~~~~~~ 372 (776)
+++....- ..+...+..+.|+|||+.++..+ .+..|.+||+.+++....... ......
T Consensus 299 ~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~sg~----~dg~i~vwd~~~~~~~~~~~~h~~~v~~--------- 357 (464)
T 3v7d_B 299 QMKCLYIL--------SGHTDRIYSTIYDHERKRCISAS----MDTTIRIWDLENGELMYTLQGHTALVGL--------- 357 (464)
T ss_dssp TTEEEEEE--------CCCSSCEEEEEEETTTTEEEEEE----TTSCEEEEETTTTEEEEEECCCSSCEEE---------
T ss_pred CCcEEEEe--------cCCCCCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCcEEEEEeCCCCcEEE---------
Confidence 88765431 34667799999999999877665 345699999998876544332 221110
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCC
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 452 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~ 452 (776)
+.++ +..+++...+| .|.+|++.++...........+ ....++++++.++..+ ++ .+.+|.+. .|.
T Consensus 358 ---~~~~-~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~--dg--~i~iwd~~---~g~ 423 (464)
T 3v7d_B 358 ---LRLS-DKFLVSAAADG--SIRGWDANDYSRKFSYHHTNLS-AITTFYVSDNILVSGS--EN--QFNIYNLR---SGK 423 (464)
T ss_dssp ---EEEC-SSEEEEEETTS--EEEEEETTTCCEEEEEECTTCC-CEEEEEECSSEEEEEE--TT--EEEEEETT---TCC
T ss_pred ---EEEc-CCEEEEEeCCC--cEEEEECCCCceeeeecCCCCc-cEEEEEeCCCEEEEec--CC--eEEEEECC---CCc
Confidence 1222 34566666677 8999998876543333222222 2345889999666554 33 36677664 343
Q ss_pred Ccccccee-ecCC-CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 453 HTLEAPVK-LTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 453 ~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
.+.. +... ..+..++|+ ++.++...+... ...++++|+
T Consensus 424 ----~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g-~~~i~~ldf 463 (464)
T 3v7d_B 424 ----LVHANILKDADQIWSVNFK--GKTLVAAVEKDG-QSFLEILDF 463 (464)
T ss_dssp ----EEESCTTTTCSEEEEEEEE--TTEEEEEEEETT-EEEEEEEEC
T ss_pred ----EEehhhccCCCcEEEEEec--CCEEEEEEEeCC-eEEEEEeec
Confidence 2322 2222 235566665 677777765433 234444443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-11 Score=127.07 Aligned_cols=281 Identities=13% Similarity=0.033 Sum_probs=175.4
Q ss_pred CCeeeEEEeecCCC-ceEEEEe-CCCcEEEEeCCCCccc-----eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEe
Q 004067 125 LGVTRYEWVKTSSK-KKIIMVP-LPDGIYFQDLSCSKPE-----LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLN 196 (776)
Q Consensus 125 ~~~~~~~~sp~~~d-g~~l~~~-~~~~l~~~d~~~~~~~-----~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~ 196 (776)
..|....|+| | ++.|+.. .|+.|.+||+..++.. ..+.... ..+....|+|||+.|+.... +.|++++
T Consensus 39 ~~V~~v~~sp---~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~-~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 39 GWVTQIATTP---QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS-HFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp SCEEEEEECT---TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCEEEEEEeC---CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-CCEEEEEECCCCCEEEEEcccccceEEe
Confidence 4789999999 8 4667654 7889999999876532 1233333 34788999999999988775 4688999
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
...+........... ......++|+++.|+..+.+
T Consensus 115 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~s~s~d---------------------------- 149 (340)
T 4aow_A 115 LTTGTTTRRFVGHTK-----------------DVLSVAFSSDNRQIVSGSRD---------------------------- 149 (340)
T ss_dssp TTTTEEEEEEECCSS-----------------CEEEEEECTTSSCEEEEETT----------------------------
T ss_pred ecccceeeeecCCCC-----------------ceeEEEEeecCccceeecCC----------------------------
Confidence 888766554433221 02356689999988876643
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
..+.+||..+........ ..+...+..+.|++++. .++.... .+..|.+||+.++......
T Consensus 150 --------~~~~~~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~s~~---~d~~i~i~d~~~~~~~~~~ 211 (340)
T 4aow_A 150 --------KTIKLWNTLGVCKYTVQD-------ESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKVWNLANCKLKTNH 211 (340)
T ss_dssp --------SCEEEECTTSCEEEEECS-------SSCSSCEEEEEECSCSSSCEEEEEE---TTSCEEEEETTTTEEEEEE
T ss_pred --------CeEEEEEeCCCceEEEEe-------ccccCcccceEEccCCCCcEEEEEc---CCCEEEEEECCCCceeeEe
Confidence 236788887766555433 45566788899999876 3333322 3445899999988765443
Q ss_pred Ee-ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 356 VE-ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 356 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
.. ....... .|+| ++.++++...+| .|.+||+...+..........+... .|++++..+.. +.
T Consensus 212 ~~h~~~v~~~---~~s~--------~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~- 275 (340)
T 4aow_A 212 IGHTGYLNTV---TVSP--------DGSLCASGGKDG--QAMLWDLNEGKHLYTLDGGDIINAL-CFSPNRYWLCA-AT- 275 (340)
T ss_dssp CCCSSCEEEE---EECT--------TSSEEEEEETTC--EEEEEETTTTEEEEEEECSSCEEEE-EECSSSSEEEE-EE-
T ss_pred cCCCCcEEEE---EECC--------CCCEEEEEeCCC--eEEEEEeccCceeeeecCCceEEee-ecCCCCceeec-cC-
Confidence 32 2221111 1333 334666666777 8999998877654433333344444 48998874433 32
Q ss_pred CCCceeeEEEEEeCCCCCCccccceeec---------C-CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCc
Q 004067 435 DGPLESHLYCAKLYPDWNHTLEAPVKLT---------N-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 501 (776)
Q Consensus 435 ~~~~~~~l~~~~~~~~g~~~~~~~~~l~---------~-~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~ 501 (776)
++ .+.+|.+. .+. ....+. . ...+..++|+|||++|+..... ..|++|++.+|+
T Consensus 276 d~--~i~iwd~~---~~~----~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----g~v~iW~~~tGt 339 (340)
T 4aow_A 276 GP--SIKIWDLE---GKI----IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD----NLVRVWQVTIGT 339 (340)
T ss_dssp TT--EEEEEETT---TTE----EEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT----SCEEEEEEEC--
T ss_pred CC--EEEEEECC---CCe----EEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC----CEEEEEeCCCcC
Confidence 32 25666543 111 111111 1 1246788999999988765432 359999998886
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-12 Score=133.34 Aligned_cols=280 Identities=11% Similarity=0.043 Sum_probs=162.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|||| .||..+. ...|.+|++.++..+.+..... ..+...+....|+|
T Consensus 17 v~~~~~s~~--~las~~~-----D~~i~lw~~~~~~~~~~~~~~~-------------------~~h~~~v~~v~~sp-- 68 (330)
T 2hes_X 17 IWSFDFSQG--ILATGST-----DRKIKLVSVKYDDFTLIDVLDE-------------------TAHKKAIRSVAWRP-- 68 (330)
T ss_dssp EEEEEEETT--EEEEEES-----SSCEEEEECSSSCCEEEEEECT-------------------TCCCSCEEEEEECT--
T ss_pred eeeeccCCC--EEEEEcC-----CCEEEEEEecCCCeEEEEEEec-------------------CCccCCEEEEEECC--
Confidence 477889998 6664443 2469999998764322211000 00124688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCc-------cceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC-Cce-eEE
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSK-------PELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI-NEQ-RQL 205 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~-------~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~-g~~-~~l 205 (776)
||+.|+.. .++.|.+||+.++. ....+..+. ..+..++|||||+.|+..+. +.|.+|++.. +.. +.+
T Consensus 69 -~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 69 -HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp -TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred -CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 99998876 68899999986432 111333333 34788999999999998875 5799999943 322 222
Q ss_pred e-eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 206 T-HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 206 t-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
. ..+. . ..+..+.|+||++.|+..+.|
T Consensus 147 ~~~~~h--------~--------~~v~~v~~~p~~~~l~s~s~D------------------------------------ 174 (330)
T 2hes_X 147 SVLQEH--------S--------QDVKHVIWHPSEALLASSSYD------------------------------------ 174 (330)
T ss_dssp EEECCC--------S--------SCEEEEEECSSSSEEEEEETT------------------------------------
T ss_pred EEeccC--------C--------CceEEEEECCCCCEEEEEcCC------------------------------------
Confidence 1 1111 0 114578999999988877644
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccC--CeEEEEEEeecCceEEEEEEECCCCce------EEEEE
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKTGQR------KVILV 356 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~l~~~d~~~g~~------~~l~~ 356 (776)
..|.+||..++....+.. +..+...+..+.|+|+ +..++..+ .+..|.+||+.++.. ..+..
T Consensus 175 ~~i~iW~~~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~l~s~s----~D~~v~iw~~~~~~~~~~~~~~~~~~ 244 (330)
T 2hes_X 175 DTVRIWKDYDDDWECVAV------LNGHEGTVWSSDFDKTEGVFRLCSGS----DDSTVRVWKYMGDDEDDQQEWVCEAI 244 (330)
T ss_dssp SCEEEEEEETTEEEEEEE------ECCCSSCEEEEEECCSSSSCEEEEEE----TTSCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CeEEEEECCCCCeeEEEE------ccCCCCcEEEEEecCCCCeeEEEEEe----CCCeEEEEEecCCCccccceeEEeee
Confidence 236888887664332222 1567778999999999 55666554 344588888755311 11111
Q ss_pred ----eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee----ccccCCe-EEEEEEeecC--CC
Q 004067 357 ----EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG----PITEGDW-MVEQIVGVNE--AS 425 (776)
Q Consensus 357 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~----~lt~~~~-~~~~~~~~s~--dg 425 (776)
+....+. +++.+++++++...+| .|.+|+..+++.+ .+..+.. .+..+ .|+| ++
T Consensus 245 ~~~~h~~~v~~------------v~~s~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v-~~~~~~~~ 309 (330)
T 2hes_X 245 LPDVHKRQVYN------------VAWGFNGLIASVGADG--VLAVYEEVDGEWKVFAKRALCHGVYEINVV-KWLELNGK 309 (330)
T ss_dssp CCSCCSSCEEE------------EEECTTSCEEEEETTS--CEEEEEEETTEEEEEEEESCTTTTSCEEEE-EEC-----
T ss_pred cccccccceEE------------EEEcCCCEEEEEeCCC--EEEEEEcCCCceEEEeccccccccceEEEE-EEecCCCc
Confidence 1111111 1333444566666677 7778887665422 1222332 45554 4888 56
Q ss_pred cEEEEEEccCCCceeeEEEEE
Q 004067 426 GQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 426 ~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+. ++++..++. +.||.+.
T Consensus 310 ~~-las~s~Dg~--v~~W~~~ 327 (330)
T 2hes_X 310 TI-LATGGDDGI--VNFWSLE 327 (330)
T ss_dssp CC-EEEEETTSE--EEEEEC-
T ss_pred eE-EEEecCCCc--EEEEEec
Confidence 64 555555543 7888765
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-12 Score=145.13 Aligned_cols=288 Identities=10% Similarity=0.025 Sum_probs=183.7
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCC----ccceecCCCCCCC-ccCceeCC--CCCEEEEEEC-CcEEEEe
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCS----KPELKLSSSSCSP-VIDPHLSS--DGTMIAFVRD-CELHVLN 196 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~----~~~~~l~~~~~~~-~~~~~~Sp--Dg~~la~~~~-~~l~~~~ 196 (776)
..+..+.|+| ||++|++..++.|.+||+.++ +....+..+. .. +..++||| ||+.|+.... +.|.+|+
T Consensus 19 ~~v~~~~~sp---dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~-~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 19 NFTTHLSYDP---TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG-SSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp TCCCCCEEET---TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT-TSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CceeEEEECC---CCCEEEEecCCeEEEEECCCCCCccccceEEecCC-CceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 4678899999 999999999999999999987 5553555443 35 78899999 9999998875 5799999
Q ss_pred cCCC------ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 197 LLIN------EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 197 l~~g------~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
+.++ +.+.+..-... ...+..+.|+|||+.|+....+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~~~~------------------- 140 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVL---------------AGPISDISWDFEGRRLCVVGEGRDN------------------- 140 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECC---------------SSCEEEEEECTTSSEEEEEECCSSC-------------------
T ss_pred CCCCcccccccccccchhhcc---------------cccEEEEEEeCCCCEEEEeccCCCC-------------------
Confidence 9766 33322211100 0115578999999999887643221
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
...|++|| .+.....+ ..+...+..+.|+||++ .++... .+..|.+||+.++
T Consensus 141 -------------~~~v~~~d-~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~----~d~~v~vwd~~~~ 193 (615)
T 1pgu_A 141 -------------FGVFISWD-SGNSLGEV---------SGHSQRINACHLKQSRPMRSMTVG----DDGSVVFYQGPPF 193 (615)
T ss_dssp -------------SEEEEETT-TCCEEEEC---------CSCSSCEEEEEECSSSSCEEEEEE----TTTEEEEEETTTB
T ss_pred -------------ccEEEEEE-CCCcceee---------ecCCccEEEEEECCCCCcEEEEEe----CCCcEEEEeCCCc
Confidence 14577777 22223333 45677899999999998 555544 4457999999887
Q ss_pred ceEEEEE-ecc---CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-ecc-c---cCCeEEEEEEe
Q 004067 350 QRKVILV-EEL---DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPI-T---EGDWMVEQIVG 420 (776)
Q Consensus 350 ~~~~l~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~l-t---~~~~~~~~~~~ 420 (776)
+...... +.. .... -.|+| +++.++++...+| .|++|++..++. ..+ . .+...+..+.
T Consensus 194 ~~~~~~~~~~~~~~~v~~---~~~~~-------~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~- 260 (615)
T 1pgu_A 194 KFSASDRTHHKQGSFVRD---VEFSP-------DSGEFVITVGSDR--KISCFDGKSGEFLKYIEDDQEPVQGGIFALS- 260 (615)
T ss_dssp EEEEEECSSSCTTCCEEE---EEECS-------TTCCEEEEEETTC--CEEEEETTTCCEEEECCBTTBCCCSCEEEEE-
T ss_pred ceeeeecccCCCCceEEE---EEECC-------CCCCEEEEEeCCC--eEEEEECCCCCEeEEecccccccCCceEEEE-
Confidence 7654433 222 1111 11222 1134666666666 899999876654 444 3 4455566654
Q ss_pred ecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC-----CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEE
Q 004067 421 VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-----KGKHVAVLDHNMRNFVDFHDSLDSPPRILLC 495 (776)
Q Consensus 421 ~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~ 495 (776)
|+ +++.++..+. ++ .+.+|.+. .+. ....+... .....+.++ +++.++..... ..|.++
T Consensus 261 ~~-~~~~l~~~~~-d~--~i~~wd~~---~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~----g~i~~~ 324 (615)
T 1pgu_A 261 WL-DSQKFATVGA-DA--TIRVWDVT---TSK----CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLD----GTLNFY 324 (615)
T ss_dssp ES-SSSEEEEEET-TS--EEEEEETT---TTE----EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETT----SCEEEE
T ss_pred Ec-CCCEEEEEcC-CC--cEEEEECC---CCc----EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECC----CCEEEE
Confidence 88 8887665544 32 25666554 232 34444433 234455665 88877766543 358999
Q ss_pred EcCCCceeEee
Q 004067 496 SLQDGSLVLPL 506 (776)
Q Consensus 496 ~~~~~~~~~~l 506 (776)
+..+++....+
T Consensus 325 d~~~~~~~~~~ 335 (615)
T 1pgu_A 325 ELGHDEVLKTI 335 (615)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCCCcEEEEE
Confidence 98776655544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-12 Score=144.27 Aligned_cols=278 Identities=13% Similarity=0.039 Sum_probs=174.6
Q ss_pred CCeeeEEEeecCCCce-EEEEe-CCCcEEEEeCCCCcc-----ceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEe
Q 004067 125 LGVTRYEWVKTSSKKK-IIMVP-LPDGIYFQDLSCSKP-----ELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLN 196 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~-~l~~~-~~~~l~~~d~~~~~~-----~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~ 196 (776)
..+....|+| ++. .|+.. .++.|.+||+..... ...+..+.. .+..+.|||||+.|+..+. +.|.+||
T Consensus 383 ~~V~~v~~~~---~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 383 DMVTAIATPI---DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-FVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp SCEEEEECCT---TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceeEEEEecC---CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-cEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4578889998 764 45443 788999999976432 113444433 4788999999999988874 5799999
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+.++...+....... .+..+.|+|||+.|+..+.+
T Consensus 459 ~~~~~~~~~~~~h~~-----------------~v~~~~~s~~~~~l~s~s~D---------------------------- 493 (694)
T 3dm0_A 459 LAAGVSTRRFVGHTK-----------------DVLSVAFSLDNRQIVSASRD---------------------------- 493 (694)
T ss_dssp TTTTEEEEEEECCSS-----------------CEEEEEECTTSSCEEEEETT----------------------------
T ss_pred CCCCcceeEEeCCCC-----------------CEEEEEEeCCCCEEEEEeCC----------------------------
Confidence 998876543332211 14578899999999877644
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe--EEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI--LTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|.+||..+.....+... ...+...+..++|+|++. .++..+ .+..|.+||+.++.....
T Consensus 494 --------~~i~iwd~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~l~s~s----~d~~v~vwd~~~~~~~~~ 556 (694)
T 3dm0_A 494 --------RTIKLWNTLGECKYTISEG-----GEGHRDWVSCVRFSPNTLQPTIVSAS----WDKTVKVWNLSNCKLRST 556 (694)
T ss_dssp --------SCEEEECTTSCEEEEECSS-----TTSCSSCEEEEEECSCSSSCEEEEEE----TTSCEEEEETTTCCEEEE
T ss_pred --------CEEEEEECCCCcceeeccC-----CCCCCCcEEEEEEeCCCCcceEEEEe----CCCeEEEEECCCCcEEEE
Confidence 2378898876655444221 134556789999999983 455444 345699999998876544
Q ss_pred EE-eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 355 LV-EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 355 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
.. +....... .|+| ++.++++...+| .|.+||+..++..........+..+ .|+|++..++...
T Consensus 557 ~~~h~~~v~~v---~~sp--------dg~~l~sg~~Dg--~i~iwd~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~~~~- 621 (694)
T 3dm0_A 557 LAGHTGYVSTV---AVSP--------DGSLCASGGKDG--VVLLWDLAEGKKLYSLEANSVIHAL-CFSPNRYWLCAAT- 621 (694)
T ss_dssp ECCCSSCEEEE---EECT--------TSSEEEEEETTS--BCEEEETTTTEEEECCBCSSCEEEE-EECSSSSEEEEEE-
T ss_pred EcCCCCCEEEE---EEeC--------CCCEEEEEeCCC--eEEEEECCCCceEEEecCCCcEEEE-EEcCCCcEEEEEc-
Confidence 33 22222211 1333 334666666677 8999998776543322333345544 4999998655443
Q ss_pred cCCCceeeEEEEEeCCCCCCccccceeecCC--------------------CCeEEEEEcCCcCEEEEEeeCCCCCCEEE
Q 004067 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNG--------------------KGKHVAVLDHNMRNFVDFHDSLDSPPRIL 493 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~--------------------~~~~~~~~spdg~~l~~~~~~~~~~~~i~ 493 (776)
.. .+.||.+.. +. .+..+... ..+..+.|||||+.|+..... ..|.
T Consensus 622 ~~---~i~iwd~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D----g~i~ 687 (694)
T 3dm0_A 622 EH---GIKIWDLES---KS----IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD----GVIR 687 (694)
T ss_dssp TT---EEEEEETTT---TE----EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT----SEEE
T ss_pred CC---CEEEEECCC---CC----ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC----CeEE
Confidence 22 256665531 21 11222110 013567999999998865433 3688
Q ss_pred EEEc
Q 004067 494 LCSL 497 (776)
Q Consensus 494 ~~~~ 497 (776)
+|++
T Consensus 688 iW~i 691 (694)
T 3dm0_A 688 VWGI 691 (694)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8876
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-11 Score=126.45 Aligned_cols=282 Identities=11% Similarity=0.058 Sum_probs=162.1
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc--eecCCC-CCCCccCceeCCCCCEEEEEEC-CcEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSS-SCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~-~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~ 199 (776)
..+..+.|+| + .|+.. .++.|.+||+.++... ..+... ....+..++|+|||+.|+..+. +.|.+|++.+
T Consensus 15 ~~v~~~~~s~---~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 15 EKIWSFDFSQ---G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp SCEEEEEEET---T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred CceeeeccCC---C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 3688899998 7 55544 7889999999876432 133222 3334788999999999988874 5799999864
Q ss_pred Cce-----eEE-eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCccee
Q 004067 200 NEQ-----RQL-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDH 273 (776)
Q Consensus 200 g~~-----~~l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (776)
+.. ..+ +..+ .. ..+..++|+|||+.|+..+.|
T Consensus 90 ~~~~~~~~~~~~~~~~--------h~--------~~V~~v~~sp~g~~las~s~D------------------------- 128 (330)
T 2hes_X 90 SADRTFEMDLLAIIEG--------HE--------NEVKGVAWSNDGYYLATCSRD------------------------- 128 (330)
T ss_dssp -----CCCEEEEEEC--------------------CEEEEEECTTSCEEEEEETT-------------------------
T ss_pred CcCccccceeEEEEcC--------CC--------CcEEEEEECCCCCEEEEEeCC-------------------------
Confidence 321 111 1111 11 125578999999999877644
Q ss_pred cCCCCCCCCCeEEEEEEEcC-CCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 274 AYPFAGASNVKVRLGVVSAA-GGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 274 ~~~~~g~~~~~~~l~~~d~~-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
..|++||+. +++ ...+.. +..+...+..+.|+||++.|+..+ .+..|.+||..++..
T Consensus 129 -----------~~v~iwd~~~~~~~~~~~~~------~~~h~~~v~~v~~~p~~~~l~s~s----~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 129 -----------KSVWIWETDESGEEYECISV------LQEHSQDVKHVIWHPSEALLASSS----YDDTVRIWKDYDDDW 187 (330)
T ss_dssp -----------SCEEEEECCTTCCCCEEEEE------ECCCSSCEEEEEECSSSSEEEEEE----TTSCEEEEEEETTEE
T ss_pred -----------CEEEEEeccCCCCCeEEEEE------eccCCCceEEEEECCCCCEEEEEc----CCCeEEEEECCCCCe
Confidence 237899984 332 122211 145667899999999999877665 345688898877643
Q ss_pred EEE---EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc---------eeecccc-CCeEEEEE
Q 004067 352 KVI---LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT---------CLGPITE-GDWMVEQI 418 (776)
Q Consensus 352 ~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~---------~~~~lt~-~~~~~~~~ 418 (776)
+.+ ..+....+.. .|.|.. ++..+++...++ .|.+|++.++ ....+.. +...+..+
T Consensus 188 ~~~~~~~~h~~~v~~~---~~~~~~------~~~~l~s~s~D~--~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 256 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSS---DFDKTE------GVFRLCSGSDDS--TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV 256 (330)
T ss_dssp EEEEEECCCSSCEEEE---EECCSS------SSCEEEEEETTS--CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE
T ss_pred eEEEEccCCCCcEEEE---EecCCC------CeeEEEEEeCCC--eEEEEEecCCCccccceeEEeeecccccccceEEE
Confidence 333 2233333322 133321 123455556677 6777776543 1122332 34455555
Q ss_pred EeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccc-eeecCCC--CeEEEEEcC--CcCEEEEEeeCCCCCCEEE
Q 004067 419 VGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP-VKLTNGK--GKHVAVLDH--NMRNFVDFHDSLDSPPRIL 493 (776)
Q Consensus 419 ~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~-~~l~~~~--~~~~~~~sp--dg~~l~~~~~~~~~~~~i~ 493 (776)
. |++++ +++++..++. +.||.+.. +.. ... ..+..+. .+..+.|+| |++.|+..... ..|.
T Consensus 257 ~-~s~~~--~l~s~~~dg~--v~iw~~~~---~~~--~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D----g~v~ 322 (330)
T 2hes_X 257 A-WGFNG--LIASVGADGV--LAVYEEVD---GEW--KVFAKRALCHGVYEINVVKWLELNGKTILATGGDD----GIVN 322 (330)
T ss_dssp E-ECTTS--CEEEEETTSC--EEEEEEET---TEE--EEEEEESCTTTTSCEEEEEEC-----CCEEEEETT----SEEE
T ss_pred E-EcCCC--EEEEEeCCCE--EEEEEcCC---Cce--EEEeccccccccceEEEEEEecCCCceEEEEecCC----CcEE
Confidence 4 88665 3455555543 78888762 310 011 1222333 467789999 67766655432 3588
Q ss_pred EEEcC
Q 004067 494 LCSLQ 498 (776)
Q Consensus 494 ~~~~~ 498 (776)
+|+..
T Consensus 323 ~W~~~ 327 (330)
T 2hes_X 323 FWSLE 327 (330)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 88764
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-13 Score=135.64 Aligned_cols=244 Identities=14% Similarity=0.082 Sum_probs=144.2
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCC----CCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRY----GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 597 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~----~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r 597 (776)
....+++.+. -|..+.+.+|.|+++.. ..+++|||+++||.+++.. .|.... ...+.+++.+.+++++|..
T Consensus 13 ~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~---~w~~~~-~~~~~~~~~~~~~v~p~~~ 88 (299)
T 4fol_A 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPD---NASEKA-FWQFQADKYGFAIVFPDTS 88 (299)
T ss_dssp EEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCHH---HHHHHS-CHHHHHHHHTCEEEEECSS
T ss_pred EEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChH---HHHHhc-hHhHHHHHcCchhhccCCC
Confidence 3455666664 57889999999987532 2368999999999876543 343211 2245667789999999842
Q ss_pred CCC-------C------Cchhh-hhhh------hhccCCccHHHHHHHHHHHHH----cCCCCCCcEEEEeechHHHHHH
Q 004067 598 GTA-------R------RGLKF-EASI------KHNCGRIDAEDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSA 653 (776)
Q Consensus 598 g~g-------~------~~~~~-~~~~------~~~~~~~~~~D~~~~i~~l~~----~~~id~~~i~l~G~S~GG~~a~ 653 (776)
-.+ . .+..+ .+.. ...+..+-.+++...|+.-.. +...+.++.+|.||||||+-|+
T Consensus 89 p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl 168 (299)
T 4fol_A 89 PRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAI 168 (299)
T ss_dssp CCSTTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHH
T ss_pred cceeecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHH
Confidence 110 0 00000 0000 000101112334333332211 1112456899999999999999
Q ss_pred HHHhhC--CCceEEEEEcCCCCCcccccccc--cccccCCCCCCccchhcCChhhhhccCC----CcEEEEecCCCCccC
Q 004067 654 ITLARF--PDVFQCAVSGAPVTSWDGYDTFY--TEKYMGLPSEDPVGYEYSSVMHHVHKMK----GKLLLVHGMIDENVH 725 (776)
Q Consensus 654 ~~a~~~--~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~P~lii~G~~D~~v~ 725 (776)
.++.++ |+.+.++.+.+|..+........ ...+++.. ...+...++...+.+.+ .++++-+|+.|....
T Consensus 169 ~~al~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~g~~---~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~D~f~~ 245 (299)
T 4fol_A 169 CGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEE---KAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLE 245 (299)
T ss_dssp HHHHHTGGGTCCSEEEEESCCCCGGGSHHHHHHHHHHTC--------CGGGCHHHHGGGSCCCTTCCEEEEEETTCTTHH
T ss_pred HHHHhCCCCCceEEEEecccccCcccccccccccccccccc---hhhhhhcCHHHHHHhcccCCCCceEEEecCCCcchh
Confidence 999985 67889999999987654321110 11222322 23344455554444332 579999999998754
Q ss_pred hH-HHHHHHHHHHHCCCC--eEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 726 FR-HTARLINALVAARKP--YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 726 ~~-~~~~~~~~l~~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
.. ..+.+.+++++++.+ +++...||.+|.+.. ...+.+.-++|..++|
T Consensus 246 ~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~f---~~~fi~dhl~fha~~L 296 (299)
T 4fol_A 246 EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNL 296 (299)
T ss_dssp HHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHT
T ss_pred hhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH---HHHHHHHHHHHHHHhc
Confidence 32 236788888888765 788889998997633 4455677778887775
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9.4e-12 Score=130.61 Aligned_cols=268 Identities=9% Similarity=0.028 Sum_probs=167.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+..++|||||+.||.... + .+.+|+.++++....... .++....+++
T Consensus 21 ~V~~v~fs~dg~~la~g~~-~-----~~~iw~~~~~~~~~~~~~-------------------------~~~~~~~~~~- 68 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTL-K-----SFEIYNVHPVAHIMSQEM-------------------------RHLSKVRMLH- 68 (355)
T ss_dssp CCCEEEECTTSSEEEEECS-S-----EEEEEEETTEEEEEEEEC-------------------------SCCCEEEECT-
T ss_pred ceEEEEECCCCCEEEEEcC-C-----EEEEEecCCcceeeeeec-------------------------CCeEEEEEcC-
Confidence 3589999999999985433 2 367888887665333221 2456677888
Q ss_pred CCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCC-ce-eEEeeCCCC
Q 004067 136 SSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLIN-EQ-RQLTHGANG 211 (776)
Q Consensus 136 ~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g-~~-~~lt~~~~~ 211 (776)
+++.+++. .++.|.+||+.+++....+.. .. .+....|++++ ++...++.|++|++.++ +. ..+.. +
T Consensus 69 --~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-~~-~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~-~-- 139 (355)
T 3vu4_A 69 --RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-DA-PVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDDIR-F-- 139 (355)
T ss_dssp --TSSEEEEECSSTTEEEEEETTTTEEEEEEEC-SS-CEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCCEE-E--
T ss_pred --CCCEEEEEECCccEEEEEECCCCcEEEEEEC-CC-ceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEecc-C--
Confidence 88888765 445899999999887644443 22 47778888874 66667889999999887 22 22211 1
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
.....++| +.+++.+.... ..|.+||
T Consensus 140 ------------------~~~~~~s~--~~la~~sg~~~----------------------------------g~v~iwd 165 (355)
T 3vu4_A 140 ------------------GGVCEFSN--GLLVYSNEFNL----------------------------------GQIHITK 165 (355)
T ss_dssp ------------------EEEEEEET--TEEEEEESSCT----------------------------------TCEEEEE
T ss_pred ------------------CceEEEEc--cEEEEeCCCcC----------------------------------cEEEEEE
Confidence 11344666 66777521110 2378888
Q ss_pred cCCCc-----------------eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEE-EEEEECCCCceEE
Q 004067 292 AAGGP-----------------VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLK-VLKFDIKTGQRKV 353 (776)
Q Consensus 292 ~~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~-l~~~d~~~g~~~~ 353 (776)
+.+++ ...+ ..+...+..++|||||++|+..+ .+.. |.+||+.+++...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~~~~---------~~h~~~v~~~~~s~~g~~l~s~s----~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 166 LQSSGSATTQDQGVQQKAILGKGVLI---------KAHTNPIKMVRLNRKSDMVATCS----QDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp CCC------------------CCEEE---------CCCSSCEEEEEECTTSSEEEEEE----TTCSEEEEEETTTCCEEE
T ss_pred CCCCCccccccccccccccCcccEEE---------EccCCceEEEEECCCCCEEEEEe----CCCCEEEEEECCCCcEEE
Confidence 88765 2333 56778899999999999888776 4555 9999999988655
Q ss_pred EEE---eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee---ecccc--------CCe------
Q 004067 354 ILV---EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL---GPITE--------GDW------ 413 (776)
Q Consensus 354 l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~---~~lt~--------~~~------ 413 (776)
... +....+.. .|+| ++.++++...++ .|.+|++..+.. ..+.. ..+
T Consensus 233 ~~~~g~h~~~v~~~---~~s~--------~~~~l~s~s~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 3vu4_A 233 EFRRGLDRADVVDM---KWST--------DGSKLAVVSDKW--TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299 (355)
T ss_dssp EEECTTCCSCEEEE---EECT--------TSCEEEEEETTC--EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred EEEcCCCCCcEEEE---EECC--------CCCEEEEEECCC--EEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence 444 33322211 2333 234566666666 888888765421 11110 000
Q ss_pred ------EEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 414 ------MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 414 ------~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.....+.|++||+.|++-.. ++ ..++|.+..
T Consensus 300 ~~~~~~~~~~~~a~~~d~~~l~~~~~-dg--~~~~~~~~~ 336 (355)
T 3vu4_A 300 LSVDKHVRGCKIAWISESSLVVVWPH-TR--MIETFKVVF 336 (355)
T ss_dssp CCCCTTCCCCEEEESSSSEEEEEETT-TT--EEEEEEEEE
T ss_pred eccCCCCCceEEEEeCCCCEEEEEeC-CC--eEEEEEEEc
Confidence 00123469999987666654 33 377888775
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.48 E-value=6.5e-12 Score=134.10 Aligned_cols=224 Identities=9% Similarity=0.007 Sum_probs=144.1
Q ss_pred CCceeEcCC----C---CEEEEEeCCCCcCcceEEEEecCCCc------eEEeecCCCCCCCCCCCCHHHHHHHHHHHHh
Q 004067 57 PTSIGFSPD----D---NLITYLLSPDHSLSRKVFSFDPKTCK------QELVFSPPDGGLDENNISPEEKLRRERLRER 123 (776)
Q Consensus 57 ~~~~~~SpD----G---~~ia~~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~ 123 (776)
+..+.|+|| | +.|+..+.+ ..|++|++.+++ .+.+..+... ..
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 120 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSD-------------------MK 120 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTT-------------------GG
T ss_pred EEEEEEecccccCCccccEEEEEcCC-----CCEEEEEccCCcccccccceeecccccc-------------------cC
Confidence 478999999 9 988876552 369999999887 4445433210 00
Q ss_pred cCCeeeEEEe----ecCCCceE-EEEe-CCCcEEEEeCCC------Cccce-----ecC------CCCCCCccCceeCCC
Q 004067 124 GLGVTRYEWV----KTSSKKKI-IMVP-LPDGIYFQDLSC------SKPEL-----KLS------SSSCSPVIDPHLSSD 180 (776)
Q Consensus 124 ~~~~~~~~~s----p~~~dg~~-l~~~-~~~~l~~~d~~~------~~~~~-----~l~------~~~~~~~~~~~~SpD 180 (776)
...+....|+ | |++. |+.. .++.|++||+.+ ++... .+. ......+..+.|+||
T Consensus 121 ~~~v~~~~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 197 (397)
T 1sq9_A 121 KHSFWALKWGASNDR---LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 197 (397)
T ss_dssp GSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT
T ss_pred CCcEEEEEEeeccCC---CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC
Confidence 1468899999 9 9998 7765 788999999988 55442 221 112234788999999
Q ss_pred CCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEee
Q 004067 181 GTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMH 259 (776)
Q Consensus 181 g~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 259 (776)
| .|+.... +.|++|++.+++.......... . ......+..+.|+|||+.|+....+..
T Consensus 198 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------h-----~~~~~~i~~i~~~~~~~~l~~~~~d~~--------- 256 (397)
T 1sq9_A 198 G-LIATGFNNGTVQISELSTLRPLYNFESQHS------M-----INNSNSIRSVKFSPQGSLLAIAHDSNS--------- 256 (397)
T ss_dssp S-EEEEECTTSEEEEEETTTTEEEEEEECCC--------------CCCCCEEEEEECSSTTEEEEEEEETT---------
T ss_pred c-eEEEEeCCCcEEEEECCCCceeEEEecccc------c-----cccCCccceEEECCCCCEEEEEecCCC---------
Confidence 9 6666554 5799999998866544332000 0 000011457899999999887764311
Q ss_pred cCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCC-----CCCCCcceEEEEEeccCCeEEEEEEee
Q 004067 260 QGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT-----DQNYDEEYLARVNWMHGNILTAQVLNR 334 (776)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~SpDg~~l~~~~~~ 334 (776)
...|.+||+.+++....-.....+ ....+...+..++|+|||++|+...
T Consensus 257 ------------------------~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 310 (397)
T 1sq9_A 257 ------------------------FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-- 310 (397)
T ss_dssp ------------------------EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE--
T ss_pred ------------------------CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe--
Confidence 145899999887754432110000 0001567889999999999877665
Q ss_pred cCceEEEEEEECCCCceEEEEE
Q 004067 335 SQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 335 ~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
.+..|++||+.+++......
T Consensus 311 --~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 311 --WDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp --TTSEEEEEETTTTEEEEEEE
T ss_pred --CCCeEEEEEcCCCceeEEEe
Confidence 45579999999887655544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-12 Score=138.03 Aligned_cols=281 Identities=12% Similarity=0.054 Sum_probs=170.1
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-----EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-----ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
..++++|+...+.+.... ...|.+|++..... ..+.. +...+..+.|
T Consensus 38 ~~~~~~~~~~~~~~~~~~----~g~i~v~~~~~~~~~~~~~~~~~~------------------------h~~~V~~~~~ 89 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASG----GGAFLVLPLGKTGRVDKNVPLVCG------------------------HTAPVLDIAW 89 (402)
T ss_dssp CSEEECSSEEEEEBCCSS----SCCEEEEETTCCEECCTTCCCBCC------------------------CSSCEEEEEE
T ss_pred CcEEECCCeEEEEEEEcC----CCEEEEEECccCCCCCCCCceEec------------------------CCCCEEEEEe
Confidence 446777777555443332 35799999865321 11221 1246889999
Q ss_pred eecCCCceEEEEe-CCCcEEEEeCCCCc-------cceecCCCCCCCccCceeCCCCC-EEEEEE-CCcEEEEecCCCce
Q 004067 133 VKTSSKKKIIMVP-LPDGIYFQDLSCSK-------PELKLSSSSCSPVIDPHLSSDGT-MIAFVR-DCELHVLNLLINEQ 202 (776)
Q Consensus 133 sp~~~dg~~l~~~-~~~~l~~~d~~~~~-------~~~~l~~~~~~~~~~~~~SpDg~-~la~~~-~~~l~~~~l~~g~~ 202 (776)
+| .|++.|+.. .++.|.+||+.++. ....+..+. ..+..+.|+|+|+ .|+..+ ++.|.+||+.+++.
T Consensus 90 ~p--~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 166 (402)
T 2aq5_A 90 CP--HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT-KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA 166 (402)
T ss_dssp CT--TCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS-SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE
T ss_pred CC--CCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC-CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc
Confidence 97 135556654 67889999999873 232444333 3488899999995 555555 35799999998876
Q ss_pred eEEee-CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 203 RQLTH-GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 203 ~~lt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
..... .... ..+..+.|+|||+.|+....+
T Consensus 167 ~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~d--------------------------------- 197 (402)
T 2aq5_A 167 VLTLGPDVHP----------------DTIYSVDWSRDGALICTSCRD--------------------------------- 197 (402)
T ss_dssp EEEECTTTCC----------------SCEEEEEECTTSSCEEEEETT---------------------------------
T ss_pred cEEEecCCCC----------------CceEEEEECCCCCEEEEEecC---------------------------------
Confidence 54331 1111 114578999999999877643
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCc-ceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEE--e
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDE-EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILV--E 357 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~--~ 357 (776)
..|++||+.+++...... ..+. ..+..+.|+|||++++..... ..+..|.+||+.++.. ..+.. +
T Consensus 198 ---~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~g~~~-~~d~~i~iwd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 198 ---KRVRVIEPRKGTVVAEKD-------RPHEGTRPVHAVFVSEGKILTTGFSR-MSERQVALWDTKHLEEPLSLQELDT 266 (402)
T ss_dssp ---SEEEEEETTTTEEEEEEE-------CSSCSSSCCEEEECSTTEEEEEEECT-TCCEEEEEEETTBCSSCSEEEECCC
T ss_pred ---CcEEEEeCCCCceeeeec-------cCCCCCcceEEEEcCCCcEEEEeccC-CCCceEEEEcCccccCCceEEeccC
Confidence 358999999887654421 1222 236779999999877665322 2567899999988664 22222 1
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce--eeccccC--CeEEEEEEeecCCCcEEEEEEc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITEG--DWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~--~~~lt~~--~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
..... ...|+| ++..++.+...+| .|++|++.+++ ...+... ...+..+. |+|+++.++ .
T Consensus 267 ~~~v~---~~~~s~-------~~~~l~~~g~~dg--~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~-~sp~~~~~~---s 330 (402)
T 2aq5_A 267 SSGVL---LPFFDP-------DTNIVYLCGKGDS--SIRYFEITSEAPFLHYLSMFSSKESQRGMG-YMPKRGLEV---N 330 (402)
T ss_dssp CSSCE---EEEEET-------TTTEEEEEETTCS--CEEEEEECSSTTCEEEEEEECCSSCCSEEE-ECCGGGSCG---G
T ss_pred CCcee---EEEEcC-------CCCEEEEEEcCCC--eEEEEEecCCCcceEeecccccCCcccceE-Eecccccce---e
Confidence 11111 112222 2222444454566 78888887765 4444332 23445554 999998643 1
Q ss_pred cCCCceeeEEEEEe
Q 004067 434 LDGPLESHLYCAKL 447 (776)
Q Consensus 434 ~~~~~~~~l~~~~~ 447 (776)
.+ ....+|.+..
T Consensus 331 ~~--~~~~~~~l~~ 342 (402)
T 2aq5_A 331 KC--EIARFYKLHE 342 (402)
T ss_dssp GT--EEEEEEEEET
T ss_pred cc--eeEEEEEcCC
Confidence 22 2367887763
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-12 Score=131.09 Aligned_cols=296 Identities=8% Similarity=0.021 Sum_probs=155.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcc--eEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSR--KVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~--~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
......++. +.+|+..-...... .+|.+|.++|+.+.+... . ......+.|||
T Consensus 5 ~~~~~~~~~-~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~----------------------~~~p~~l~~sp- 59 (361)
T 3scy_A 5 TDPSTTDSE-LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-E----------------------VANPSYLIPSA- 59 (361)
T ss_dssp -CCCGGGGE-EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-E----------------------CSCCCSEEECT-
T ss_pred CChhhCCCc-eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-c----------------------CCCCceEEECC-
Confidence 333344443 34455532222223 455556677887776642 1 13455678999
Q ss_pred CCCceEEEEeCC-----CcEEEEeCC--CCccceecCCCC--CCCccCceeCCCCCEEEEEEC--CcEEEEecCC-Ccee
Q 004067 136 SSKKKIIMVPLP-----DGIYFQDLS--CSKPELKLSSSS--CSPVIDPHLSSDGTMIAFVRD--CELHVLNLLI-NEQR 203 (776)
Q Consensus 136 ~~dg~~l~~~~~-----~~l~~~d~~--~~~~~~~l~~~~--~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~-g~~~ 203 (776)
||++|++... +.|.+|+++ +++.+ .+.... ......+.+ ||+.|+.... +.+.++++.+ +...
T Consensus 60 --dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~-~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~ 134 (361)
T 3scy_A 60 --DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH-LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALL 134 (361)
T ss_dssp --TSSEEEEEECCSSTTCEEEEEEEETTTTEEE-EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBC
T ss_pred --CCCEEEEEEccCCCCCcEEEEEEeCCCCcEE-EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCc
Confidence 9999998744 567666554 46655 333211 111233444 9998877763 4688998874 3222
Q ss_pred EE----eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 204 QL----THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 204 ~l----t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
.+ ...+... . ...........++|||||++|++.....
T Consensus 135 ~~~~~~~~~g~~~-~-------~~~~~~~~~~~~~~spdg~~l~~~~~~~------------------------------ 176 (361)
T 3scy_A 135 PASDVIEFKGSGP-D-------KERQTMPHLHCVRITPDGKYLLADDLGT------------------------------ 176 (361)
T ss_dssp SCSEEEECCCCCS-C-------TTTCSSCCEEEEEECTTSSEEEEEETTT------------------------------
T ss_pred ccceeEEccCCCC-C-------ccccCCCcceEEEECCCCCEEEEEeCCC------------------------------
Confidence 11 1111100 0 0000011124588999999888754211
Q ss_pred CCCCeEEEEEEEcC--CC----c-eE------EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 280 ASNVKVRLGVVSAA--GG----P-VS------WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 280 ~~~~~~~l~~~d~~--~~----~-~~------~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
..+++|+++ ++ + .. .+.. ........++|||||+.+++... ....|.+|++
T Consensus 177 -----~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~~~ 240 (361)
T 3scy_A 177 -----DQIHKFNINPNANADNKEKFLTKGTPEAFKV--------APGSGPRHLIFNSDGKFAYLINE---IGGTVIAFRY 240 (361)
T ss_dssp -----TEEEEEEECTTCCTTTCCCCEEEEEEEEEEC--------CTTCCEEEEEECTTSSEEEEEET---TTCEEEEEEE
T ss_pred -----CEEEEEEEcCCCCcccccceeecccccceec--------CCCCCCeEEEEcCCCCEEEEEcC---CCCeEEEEEe
Confidence 235566554 33 2 21 2221 22334567999999997776542 2345888888
Q ss_pred CCCceEEEEEeccC-c-ee-ecccccccCCCCccccCCeEEEEeccCCceEEEEEeC--CCceeeccccC--CeEEEEEE
Q 004067 347 KTGQRKVILVEELD-S-WV-NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDI--NGTCLGPITEG--DWMVEQIV 419 (776)
Q Consensus 347 ~~g~~~~l~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~--~g~~~~~lt~~--~~~~~~~~ 419 (776)
++|..+.+...... . .. ...-.|+| +++++|++.+.+...|.+|++ .+++.+.+... ...+..+
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~i~~sp--------dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~- 311 (361)
T 3scy_A 241 ADGMLDEIQTVAADTVNAQGSGDIHLSP--------DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNF- 311 (361)
T ss_dssp ETTEEEEEEEEESCSSCCCCEEEEEECT--------TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEE-
T ss_pred cCCceEEeEEEecCCCCCCCcccEEECC--------CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceE-
Confidence 88876655432211 0 00 00111222 233455555441235555554 45554333221 2223344
Q ss_pred eecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 420 GVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
.|+|||++||+.....+ .+.+|.++..
T Consensus 312 ~~spdg~~l~~~~~~~~--~v~v~~~d~~ 338 (361)
T 3scy_A 312 IITPNGKYLLVACRDTN--VIQIFERDQA 338 (361)
T ss_dssp EECTTSCEEEEEETTTT--EEEEEEECTT
T ss_pred EECCCCCEEEEEECCCC--CEEEEEEECC
Confidence 49999999888876544 4788888863
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=130.86 Aligned_cols=219 Identities=13% Similarity=0.003 Sum_probs=126.9
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecC-CCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPK-TCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+..++|||||++|+..... .|.+|+++ +|+..++..+.. ........|+|
T Consensus 41 ~~~~~a~spdg~~l~~~~~~------~v~~~~~~~~g~~~~~~~~~~----------------------~g~~~~~~~sp 92 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK------KWSSFAVKSPTEIVHEASHPI----------------------GGHPRANDADT 92 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT------EEEEEEEEETTEEEEEEEEEC----------------------CSSGGGGCTTS
T ss_pred CCcEEEECCCCCEEEEEccc------eEEEEEECCCCCEEEeeEeec----------------------CCCCccEEECC
Confidence 45889999999988755542 58888887 777655543211 01123457889
Q ss_pred cCCCceEE-EEe---------------CCCcEEEEeCCC-CccceecCC---CCCCCccCceeCCCCCEEEEEEC--CcE
Q 004067 135 TSSKKKII-MVP---------------LPDGIYFQDLSC-SKPELKLSS---SSCSPVIDPHLSSDGTMIAFVRD--CEL 192 (776)
Q Consensus 135 ~~~dg~~l-~~~---------------~~~~l~~~d~~~-~~~~~~l~~---~~~~~~~~~~~SpDg~~la~~~~--~~l 192 (776)
||++| ++. .++.+.+|+++. ++....+.. ........+.|||||+.|+.... +.|
T Consensus 93 ---dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v 169 (365)
T 1jof_A 93 ---NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKL 169 (365)
T ss_dssp ---CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred ---CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEE
Confidence 99963 332 356788888863 443312221 12234678999999998766543 469
Q ss_pred EEEecC-CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcc
Q 004067 193 HVLNLL-INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE 271 (776)
Q Consensus 193 ~~~~l~-~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (776)
++++++ +|+.+.+...... ..+ .....++|||||+.|+......
T Consensus 170 ~~~~~~~~g~~~~~~~~~~~---~~g----------~~p~~~~~spdg~~l~v~~~~~---------------------- 214 (365)
T 1jof_A 170 WTHRKLASGEVELVGSVDAP---DPG----------DHPRWVAMHPTGNYLYALMEAG---------------------- 214 (365)
T ss_dssp EEEEECTTSCEEEEEEEECS---STT----------CCEEEEEECTTSSEEEEEETTT----------------------
T ss_pred EEEEECCCCCEEEeeeEecC---CCC----------CCCCEeEECCCCCEEEEEECCC----------------------
Confidence 999998 7876544221000 000 0034678999999887654221
Q ss_pred eecCCCCCCCCCeEEEEEEEcCCCceE----EEEcccCCCCCCCCcc------eEEEEE-eccCCeEEEEEEeecCc---
Q 004067 272 DHAYPFAGASNVKVRLGVVSAAGGPVS----WMDLQCGGTDQNYDEE------YLARVN-WMHGNILTAQVLNRSQT--- 337 (776)
Q Consensus 272 ~~~~~~~g~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~------~~~~~~-~SpDg~~l~~~~~~~~~--- 337 (776)
....++.++.++|+.. .+..-.. ....+.. ....++ |||||+.|+. ++++.+
T Consensus 215 -----------~~v~v~~~~~~~g~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~i~~~spdG~~l~v-~~~~~~~~~ 280 (365)
T 1jof_A 215 -----------NRICEYVIDPATHMPVYTHHSFPLIPP--GIPDRDPETGKGLYRADVCALTFSGKYMFA-SSRANKFEL 280 (365)
T ss_dssp -----------TEEEEEEECTTTCCEEEEEEEEESSCT--TCCCBCTTTSSBSEEEEEEEECTTSSEEEE-EEEESSTTS
T ss_pred -----------CeEEEEEEeCCCCcEEEccceEEcCCC--CcCCcccccccccccccEEEECCCCCEEEE-ECCCCCCCC
Confidence 1133444455566643 2221100 0001111 577899 9999997764 444422
Q ss_pred eEEEEEEECC-CCceEEE
Q 004067 338 KLKVLKFDIK-TGQRKVI 354 (776)
Q Consensus 338 ~~~l~~~d~~-~g~~~~l 354 (776)
...|.+|+++ +|+.+.+
T Consensus 281 ~~~i~v~~~~~~g~~~~~ 298 (365)
T 1jof_A 281 QGYIAGFKLRDCGSIEKQ 298 (365)
T ss_dssp CCEEEEEEECTTSCEEEE
T ss_pred CCeEEEEEECCCCCEEEe
Confidence 1257777775 6776653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-10 Score=129.10 Aligned_cols=356 Identities=12% Similarity=0.020 Sum_probs=206.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|+.|...++|+.... ...|+++|.++++....... +.....+.+||
T Consensus 156 P~~~~~~~d~~~~~~V~~~~---~~~V~viD~~t~~v~~~i~~------------------------g~~p~~v~~Sp-- 206 (567)
T 1qks_A 156 PTQQMNDWDLENLFSVTLRD---AGQIALIDGSTYEIKTVLDT------------------------GYAVHISRLSA-- 206 (567)
T ss_dssp CSSCCSCCCGGGEEEEEETT---TTEEEEEETTTCCEEEEEEC------------------------SSCEEEEEECT--
T ss_pred ccccccccCCCceEEEEeCC---CCeEEEEECCCCeEEEEEeC------------------------CCCccceEECC--
Confidence 45677888877778887754 35899999999876433321 23456788999
Q ss_pred CCceEEEEe-CCCcEEEEeCC--CCccceecCCCCCCCccCceeC----CCCCEEEEEE--CCcEEEEecCCCceeEEee
Q 004067 137 SKKKIIMVP-LPDGIYFQDLS--CSKPELKLSSSSCSPVIDPHLS----SDGTMIAFVR--DCELHVLNLLINEQRQLTH 207 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~--~~~~~~~l~~~~~~~~~~~~~S----pDg~~la~~~--~~~l~~~~l~~g~~~~lt~ 207 (776)
||+++++. .++.|+++|+. +++....+..+. ....+.|| |||++++... .+.+.++|..+.+..+...
T Consensus 207 -DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 207 -SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp -TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred -CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 99998876 56689999995 555443444332 25678999 7999876654 3679999998887765433
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
..... ..+ ..+. . -.++.++..|+++..+++...+. .+|
T Consensus 284 ~~~~~--~~~-~~~~--p-~~rva~i~~s~~~~~~vv~~~~~-----------------------------------g~v 322 (567)
T 1qks_A 284 TRGMT--YDE-QEYH--P-EPRVAAILASHYRPEFIVNVKET-----------------------------------GKI 322 (567)
T ss_dssp CCEEC--TTT-CCEE--S-CCCEEEEEECSSSSEEEEEETTT-----------------------------------TEE
T ss_pred ccccc--ccc-cccc--C-CCceEEEEEcCCCCEEEEEecCC-----------------------------------CeE
Confidence 22100 000 0000 0 01234667788877655543211 346
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHD 367 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 367 (776)
.++|..+.+...+.. ........+..|+|||++++...+. ...|.++|+++++......-.....
T Consensus 323 ~~vd~~~~~~~~v~~-------i~~~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~kl~~~i~vgg~~P----- 387 (567)
T 1qks_A 323 LLVDYTDLNNLKTTE-------ISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGKLVAIEDTGGQTP----- 387 (567)
T ss_dssp EEEETTCSSEEEEEE-------EECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTEEEEEEECSSSSB-----
T ss_pred EEEecCCCccceeee-------eeccccccCceECCCCCEEEEEeCC---CCeEEEEECCCCcEEEEEeccCcCC-----
Confidence 777776654222211 1122345578899999977666533 2348889999987654433101100
Q ss_pred ccccCCCCccc-c-CCeEEEEeccCCceEEEEEeCCCc--------eeeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 368 CFTPLDKGVTK-Y-SGGFIWASEKTGFRHLYLHDINGT--------CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 368 ~~~~~~~~~~~-~-~~~~~~~s~~~g~~~l~~~~~~g~--------~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
.| +.+..+ + +++-+|.+..-|...|.+++.+.+ ..+.+...... .-++..+||++++|+...-. |
T Consensus 388 --hp-g~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-~~~i~~~p~~~~l~v~~~~~-~ 462 (567)
T 1qks_A 388 --HP-GRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-SLFIKTHPNSQYLYVDATLN-P 462 (567)
T ss_dssp --CC-TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-CCCEECCTTCSEEEEECTTC-S
T ss_pred --CC-ccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-CEEEEeCCCCCeEEEecCCC-C
Confidence 01 111111 1 224445444434447888887752 23344332111 11234799999988875321 1
Q ss_pred c---eeeEEEEEeCCC---CCCccccceeecC---------CCCeEEEEEcCCcCEEEEEeeC-CCCCCEEEEEEcCCCc
Q 004067 438 L---ESHLYCAKLYPD---WNHTLEAPVKLTN---------GKGKHVAVLDHNMRNFVDFHDS-LDSPPRILLCSLQDGS 501 (776)
Q Consensus 438 ~---~~~l~~~~~~~~---g~~~~~~~~~l~~---------~~~~~~~~~spdg~~l~~~~~~-~~~~~~i~~~~~~~~~ 501 (776)
. ...+..+++.+. |.. .....+.- ...+..+.|+|||+++.+...+ .+....|.++|..+++
T Consensus 463 ~~~~~~~v~v~d~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 463 EAEISGSVAVFDIKAMTGDGSD--PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp SHHHHTCEEEEEGGGCCCSSSC--CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CcccCceEEEEECCcccccccC--CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 1 124555665321 110 11133321 2235678999999998887643 2345689999999988
Q ss_pred eeEeec
Q 004067 502 LVLPLY 507 (776)
Q Consensus 502 ~~~~l~ 507 (776)
..+.+.
T Consensus 541 ~~~~i~ 546 (567)
T 1qks_A 541 LKHVIK 546 (567)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 666553
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=142.45 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=143.8
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCC--ccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCS--KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~--~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g 200 (776)
..+....|+| ||++|+.. .++.|++||+.++ +....+..+. ..+..++|+|||+.|+..+. +.|.+|++.++
T Consensus 12 ~~v~~~~~s~---~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 12 KPSYEHAFNS---QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHD-KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp SCCSCCEECS---SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCS-SCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred CcEEEEEECC---CCCEEEEecCCCEEEEEEccCCceEEEEEEecCC-ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 3578889999 99999987 7889999999987 3332444333 34888999999999998875 57999999988
Q ss_pred c-eeE-EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 201 E-QRQ-LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 201 ~-~~~-lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
+ .+. ....... ..+..+.|+|||+.|+..+.+
T Consensus 88 ~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~d------------------------------ 121 (377)
T 3dwl_C 88 GTWKQTLVLLRLN----------------RAATFVRWSPNEDKFAVGSGA------------------------------ 121 (377)
T ss_dssp -CCCCEEECCCCS----------------SCEEEEECCTTSSCCEEEESS------------------------------
T ss_pred CceeeeeEecccC----------------CceEEEEECCCCCEEEEEecC------------------------------
Confidence 7 111 1111111 114578899999999887643
Q ss_pred CCCCCeEEEEEEEcCCCc----eEEEEcccCCCCCCC-CcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce--
Q 004067 279 GASNVKVRLGVVSAAGGP----VSWMDLQCGGTDQNY-DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-- 351 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-- 351 (776)
..|.+||+++++ ...+ .. +...+..++|+|||+.++..+ .+..|.+||+.++..
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~---------~~~h~~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~ 182 (377)
T 3dwl_C 122 ------RVISVCYFEQENDWWVSKHL---------KRPLRSTILSLDWHPNNVLLAAGC----ADRKAYVLSAYVRDVDA 182 (377)
T ss_dssp ------SCEEECCC-----CCCCEEE---------CSSCCSCEEEEEECTTSSEEEEEE----SSSCEEEEEECCSSCC-
T ss_pred ------CeEEEEEECCcccceeeeEe---------ecccCCCeEEEEEcCCCCEEEEEe----CCCEEEEEEEEecccCC
Confidence 237888888876 3344 33 677899999999999887766 344588999864321
Q ss_pred -------------EEEE---EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-----eecccc
Q 004067 352 -------------KVIL---VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-----LGPITE 410 (776)
Q Consensus 352 -------------~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-----~~~lt~ 410 (776)
..+. .+...... -.|+| ++.++++...+| .|.+|++.+++ ...+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~sp--------~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~ 249 (377)
T 3dwl_C 183 KPEASVWGSRLPFNTVCAEYPSGGWVHA---VGFSP--------SGNALAYAGHDS--SVTIAYPSAPEQPPRALITVKL 249 (377)
T ss_dssp CCCSCSSCSCCCEEEEEECCCCSSSEEE---EEECT--------TSSCEEEEETTT--EEC-CEECSTTSCEEECCCEEC
T ss_pred CccccccccccchhhhhhcccCCceEEE---EEECC--------CCCEEEEEeCCC--cEEEEECCCCCCcceeeEeecC
Confidence 1111 11111110 11222 233555566667 88999987765 345565
Q ss_pred CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 411 GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 411 ~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+...+..+. |+++|+.|+ .+..++ ..+|...
T Consensus 250 ~~~~v~~~~-~s~~~~~l~-~~~~~~---~~~~~~~ 280 (377)
T 3dwl_C 250 SQLPLRSLL-WANESAIVA-AGYNYS---PILLQGN 280 (377)
T ss_dssp SSSCEEEEE-EEETTEEEE-EESSSS---EEEECCC
T ss_pred CCCceEEEE-EcCCCCEEE-EEcCCc---EEEEEeC
Confidence 665666665 999998654 443332 3455443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-11 Score=132.06 Aligned_cols=298 Identities=11% Similarity=0.028 Sum_probs=176.0
Q ss_pred EEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEec--CCCceeEE
Q 004067 130 YEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNL--LINEQRQL 205 (776)
Q Consensus 130 ~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l--~~g~~~~l 205 (776)
+.++| +|+.++.. .++.|.+||..+++....+..+.. ...++|||||++|+.... +.|.++|+ .+++...-
T Consensus 143 ~~~~p---~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 143 NDLDL---PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp SCCCG---GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred cccCC---CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE
Confidence 34778 88766655 457899999999987645543332 567889999999887765 46999999 77765332
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECC----CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSL----DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
...+.. ...++||| ||++|+......
T Consensus 218 i~~g~~------------------p~~va~sp~~~~dg~~l~v~~~~~-------------------------------- 247 (543)
T 1nir_A 218 IKIGIE------------------ARSVESSKFKGYEDRYTIAGAYWP-------------------------------- 247 (543)
T ss_dssp EECCSE------------------EEEEEECCSTTCTTTEEEEEEEES--------------------------------
T ss_pred EecCCC------------------cceEEeCCCcCCCCCEEEEEEccC--------------------------------
Confidence 222211 34788999 999887765322
Q ss_pred CCeEEEEEEEcCCCceEE-EEcccCCC---CCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 282 NVKVRLGVVSAAGGPVSW-MDLQCGGT---DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~-l~~~~~~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..|.+||..+++... +... +.. ........+..+.+|||++.+++.. . ....|++||..+++...++.-
T Consensus 248 ---~~v~v~D~~t~~~~~~i~~~-g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~--~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 248 ---PQFAIMDGETLEPKQIVSTR-GMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-K--ETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp ---SEEEEEETTTCCEEEEEECC-EECSSSCCEESCCCEEEEEECSSSSEEEEEE-T--TTTEEEEEECTTSSSCEEEEE
T ss_pred ---CeEEEEeccccccceeeccc-CcccCccccccCCceEEEEECCCCCEEEEEE-C--CCCeEEEEEecCCCcceeEEe
Confidence 347889998887644 3221 000 0001122577899999998655443 2 345799999987654322221
Q ss_pred ccCceeecccccccCCCCccccCCeEEE-EeccCCceEEEEEeCCCceeec-cccCC--eEEEEEEeecCCCcEEEEEEc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIW-ASEKTGFRHLYLHDINGTCLGP-ITEGD--WMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~g~~~l~~~~~~g~~~~~-lt~~~--~~~~~~~~~s~dg~~i~~~~~ 433 (776)
....+. ..-.|+| ++++++ .+..++ .|.+||+.+++... +..+. ........++|+++.+|++..
T Consensus 321 ~~~~~~-~~~~~sp--------dg~~l~va~~~~~--~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~ 389 (543)
T 1nir_A 321 GAAPFL-HDGGWDS--------SHRYFMTAANNSN--KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 389 (543)
T ss_dssp ECCSSC-CCEEECT--------TSCEEEEEEGGGT--EEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEB
T ss_pred ccCcCc-cCceECC--------CCCEEEEEecCCC--eEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEecc
Confidence 112121 0111222 233344 444455 89999998886544 33221 100111225788777777765
Q ss_pred cCCCceeeEEEEEeCCCCC--CccccceeecCCC-CeEEEEEcCCcCEEEEEee-CCC--CCCEEEEEEcCCCcee
Q 004067 434 LDGPLESHLYCAKLYPDWN--HTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHD-SLD--SPPRILLCSLQDGSLV 503 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~--~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~-~~~--~~~~i~~~~~~~~~~~ 503 (776)
... ..+.+|.++. .+. .....++.|.... +...+.++|||++|..... +++ ....|.++|..+++..
T Consensus 390 ~~d-~~V~v~d~~~--~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 390 LGD-GSISLIGTDP--KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp SSS-SEEEEEECCT--TTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCC-ceEEEEEeCC--CCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 321 2366766653 211 0012455666543 4567899999998876542 111 1237999999888754
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-13 Score=143.02 Aligned_cols=224 Identities=11% Similarity=-0.011 Sum_probs=141.6
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh------CCcEEEEECCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS------KGILVWKLDNR 597 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~------~G~~v~~~d~r 597 (776)
...+.+.. +|..+++....+.. ...+.||++||.+++.. .|..++..|++ .||.|+++|+|
T Consensus 85 ~~~~~~~i-~g~~i~~~~~~~~~-----~~~~pllllHG~~~s~~-------~~~~~~~~L~~~~~~~~~gf~vv~~Dlp 151 (408)
T 3g02_A 85 FPQFTTEI-EGLTIHFAALFSER-----EDAVPIALLHGWPGSFV-------EFYPILQLFREEYTPETLPFHLVVPSLP 151 (408)
T ss_dssp SCEEEEEE-TTEEEEEEEECCSC-----TTCEEEEEECCSSCCGG-------GGHHHHHHHHHHCCTTTCCEEEEEECCT
T ss_pred CCCEEEEE-CCEEEEEEEecCCC-----CCCCeEEEECCCCCcHH-------HHHHHHHHHhcccccccCceEEEEECCC
Confidence 33444444 89999999888654 23478999999887754 34455677776 69999999999
Q ss_pred CCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCC-cEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 598 GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG-HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 598 g~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~-~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
|+|.|...... ......++.+.+..+.++. ..+ +++++||||||.+++.+|.++|+++...+...+.....
T Consensus 152 G~G~S~~~~~~------~~~~~~~~a~~~~~l~~~l--g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~~~~ 223 (408)
T 3g02_A 152 GYTFSSGPPLD------KDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMSAPP 223 (408)
T ss_dssp TSTTSCCSCSS------SCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCCCT
T ss_pred CCCCCCCCCCC------CCCCHHHHHHHHHHHHHHh--CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCCCCc
Confidence 99988653210 1234666777666666653 334 89999999999999999999988666655544433210
Q ss_pred ------ccc-----------c------c--------------------------cccccc--CC-CCCCc----------
Q 004067 677 ------GYD-----------T------F--------------------------YTEKYM--GL-PSEDP---------- 694 (776)
Q Consensus 677 ------~~~-----------~------~--------------------------~~~~~~--~~-~~~~~---------- 694 (776)
.+. . . ..+.+. .. .....
T Consensus 224 ~~~~~~~l~~~e~~~~~~~~~~~~~~~~y~~~~~t~p~tl~~~l~dsP~gl~awi~ek~~~w~d~~~~~d~ll~~v~~y~ 303 (408)
T 3g02_A 224 EGPSIESLSAAEKEGIARMEKFMTDGYAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYW 303 (408)
T ss_dssp TCCCGGGSCHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHSCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHHHHHhCcchhhhhcCcHHHHHHHHhcChHHHHhhhhhhhhhccCCCCCHHHHHHHHHHHH
Confidence 000 0 0 000000 00 00000
Q ss_pred ---------cchhcC-Ch--hh-------hhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 695 ---------VGYEYS-SV--MH-------HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 695 ---------~~~~~~-~~--~~-------~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
..|.+. .. .. .+.++++|+++++|..|...++.. +.+.. ...+.+.+++++||..
T Consensus 304 ~t~~~~~s~~~y~e~~~~~~~~~~~~~~~~l~~i~vPt~v~~~~~D~~~~p~~---~~~~~---~~~~~~~~~~~gGHf~ 377 (408)
T 3g02_A 304 LTESFPRAIHTYREWVPTASAPNGATPYQKELYIHKPFGFSFFPKDLVPVPRS---WIATT---GNLVFFRDHAEGGHFA 377 (408)
T ss_dssp HTTHHHHHGGGHHHHTTC-------CTTTTTTCEEEEEEEEECTBSSSCCCHH---HHGGG---EEEEEEEECSSCBSCH
T ss_pred hhccchhHHHHHHhhcccccccccccccccCCCcCCCEEEEeCCcccccCcHH---HHHhc---CCeeEEEECCCCcCch
Confidence 000000 00 00 235567899999999997766642 22222 2336788999999976
Q ss_pred CCCCcHHHHHHHHHHHHHHh
Q 004067 756 RRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 756 ~~~~~~~~~~~~~~~fl~~~ 775 (776)
..+.++.+.+.+.+||++.
T Consensus 378 -~lE~Pe~~~~~l~~fl~~~ 396 (408)
T 3g02_A 378 -ALERPRELKTDLTAFVEQV 396 (408)
T ss_dssp -HHHCHHHHHHHHHHHHHHH
T ss_pred -hhhCHHHHHHHHHHHHHHH
Confidence 6788999999999999753
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-11 Score=130.45 Aligned_cols=258 Identities=8% Similarity=-0.022 Sum_probs=139.3
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCC-CCccceecCCCC-CCCccCceeCCCCCE-EEEEE--------------
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLS-CSKPELKLSSSS-CSPVIDPHLSSDGTM-IAFVR-------------- 188 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~-~~~~~~~l~~~~-~~~~~~~~~SpDg~~-la~~~-------------- 188 (776)
......|+| ||++|+....+.|.+|+++ +++.. .+.... ......+.|||||++ ++++.
T Consensus 41 ~~~~~a~sp---dg~~l~~~~~~~v~~~~~~~~g~~~-~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 41 PISWMTFDH---ERKNIYGAAMKKWSSFAVKSPTEIV-HEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCSEEEECT---TSSEEEEEEBTEEEEEEEEETTEEE-EEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCcEEEECC---CCCEEEEEccceEEEEEECCCCCEE-EeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 456788999 9999887754489999987 66655 332111 112456899999997 44443
Q ss_pred -CCcEEEEecC-CCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCC
Q 004067 189 -DCELHVLNLL-INEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSV 265 (776)
Q Consensus 189 -~~~l~~~~l~-~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 265 (776)
++.+.+++++ +|+.. .+..... ++......++|||||++|+......
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~~spdG~~l~~~~~~~---------------- 166 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEY--------------QENTGIHGMVFDPTETYLYSADLTA---------------- 166 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEEC--------------CTTCCEEEEEECTTSSEEEEEETTT----------------
T ss_pred CCceEEEEccCCCCcCcceEeeEEe--------------CCCCcceEEEECCCCCEEEEEcCCC----------------
Confidence 3457788876 45443 2221000 0001144788999999876543110
Q ss_pred CCCCcceecCCCCCCCCCeEEEEEEEcC-CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEE
Q 004067 266 GSEAQEDHAYPFAGASNVKVRLGVVSAA-GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF 344 (776)
Q Consensus 266 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 344 (776)
..|++|+++ +|+...+..-. ...+......++|||||+.++.... ....-.++.+
T Consensus 167 -------------------~~v~~~~~~~~g~~~~~~~~~----~~~~g~~p~~~~~spdg~~l~v~~~-~~~~v~v~~~ 222 (365)
T 1jof_A 167 -------------------NKLWTHRKLASGEVELVGSVD----APDPGDHPRWVAMHPTGNYLYALME-AGNRICEYVI 222 (365)
T ss_dssp -------------------TEEEEEEECTTSCEEEEEEEE----CSSTTCCEEEEEECTTSSEEEEEET-TTTEEEEEEE
T ss_pred -------------------CEEEEEEECCCCCEEEeeeEe----cCCCCCCCCEeEECCCCCEEEEEEC-CCCeEEEEEE
Confidence 247889988 77765432110 0112345778999999998776643 2244456666
Q ss_pred ECCCCceEE----EEEeccCceeeccc----ccccCCCCcc-ccC-CeEEEEeccCCc----eEEEEEeCC-Cceeec--
Q 004067 345 DIKTGQRKV----ILVEELDSWVNLHD----CFTPLDKGVT-KYS-GGFIWASEKTGF----RHLYLHDIN-GTCLGP-- 407 (776)
Q Consensus 345 d~~~g~~~~----l~~~~~~~~~~~~~----~~~~~~~~~~-~~~-~~~~~~s~~~g~----~~l~~~~~~-g~~~~~-- 407 (776)
|.++|+... +..-.. .+..... .+.+ ..+. +++ ++++|++++... ..|.+|+++ +++...
T Consensus 223 ~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~--~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~ 299 (365)
T 1jof_A 223 DPATHMPVYTHHSFPLIPP-GIPDRDPETGKGLYR--ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp CTTTCCEEEEEEEEESSCT-TCCCBCTTTSSBSEE--EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred eCCCCcEEEccceEEcCCC-CcCCccccccccccc--ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence 666776542 111100 0000000 0000 0112 222 335566654332 267777764 455443
Q ss_pred --cccCCeEEEEEEeecC---CCcEEEEEEccCCCceeeEEEEEe
Q 004067 408 --ITEGDWMVEQIVGVNE---ASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 408 --lt~~~~~~~~~~~~s~---dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+......... ..|+| ||++|++.....+ .+.+|.++.
T Consensus 300 ~~~~~~~~~~~~-~a~sp~~~dg~~l~v~~~~~~--~v~v~~~~~ 341 (365)
T 1jof_A 300 FLSPTPTSGGHS-NAVSPCPWSDEWMAITDDQEG--WLEIYRWKD 341 (365)
T ss_dssp EEEECSSCCTTC-CCEEECTTCTTEEEEECSSSC--EEEEEEEET
T ss_pred eeeecCCCCccc-ceecCCCcCCCEEEEEEcCCC--eEEEEEEch
Confidence 2111111122 24788 8998877755433 378888874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=134.40 Aligned_cols=251 Identities=9% Similarity=0.083 Sum_probs=159.8
Q ss_pred CCCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCC---Cce---EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 004067 56 APTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKT---CKQ---ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVT 128 (776)
Q Consensus 56 ~~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~---~~~---~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 128 (776)
.+..++||| ||++|+..+.+ ..|.+||+.+ +.. .....+ ...+.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~h------------------------~~~v~ 115 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQ-----GVIKIWNLKEIIVGEVYSSSLTYDC------------------------SSTVT 115 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETT-----SEEEEEEHHHHHTTCCCSCSEEEEC------------------------SSCEE
T ss_pred ceEEEEECCCCCCEEEEecCC-----ceEEEeECcccccCcccceeeeccC------------------------CCCEE
Confidence 358999999 99999876542 4699999876 431 111122 24788
Q ss_pred eEEEeecCCCceEEEEe-CCCcEEEEeCC---CCccceecCC--------C---CCCCccCce--eCCCCCEEEEEEC-C
Q 004067 129 RYEWVKTSSKKKIIMVP-LPDGIYFQDLS---CSKPELKLSS--------S---SCSPVIDPH--LSSDGTMIAFVRD-C 190 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~-~~~~l~~~d~~---~~~~~~~l~~--------~---~~~~~~~~~--~SpDg~~la~~~~-~ 190 (776)
...|+| |++.|+.. .++.|.+||++ .++....+.. . ....+.... ++||++.|+.... +
T Consensus 116 ~~~~~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 192 (437)
T 3gre_A 116 QITMIP---NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192 (437)
T ss_dssp EEEECT---TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred EEEEeC---CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence 999999 99998876 67899999994 3333211110 0 111122223 6788998888876 5
Q ss_pred cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 191 ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 191 ~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
.|.+||+.+++.......... ...+..++|+|||+.|+..+.+
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h---------------~~~v~~~~~s~~~~~l~s~~~d---------------------- 235 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPR---------------HGAVSSICIDEECCVLILGTTR---------------------- 235 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGG---------------GCCEEEEEECTTSCEEEEEETT----------------------
T ss_pred eEEEEeCCCCeeeEEEccCCC---------------CCceEEEEECCCCCEEEEEcCC----------------------
Confidence 799999998876544332100 0115578999999998877643
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEe----ccCCeEEEEEEeecCceEEEEEEEC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW----MHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
..|.+||+.+++....-. ..+...+..+.| +|||+.++..+ .+..|.+||+
T Consensus 236 --------------g~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~s~~~~~l~s~~----~dg~i~iwd~ 290 (437)
T 3gre_A 236 --------------GIIDIWDIRFNVLIRSWS-------FGDHAPITHVEVCQFYGKNSVIVVGGS----SKTFLTIWNF 290 (437)
T ss_dssp --------------SCEEEEETTTTEEEEEEB-------CTTCEEEEEEEECTTTCTTEEEEEEES----TTEEEEEEET
T ss_pred --------------CeEEEEEcCCccEEEEEe-------cCCCCceEEEEeccccCCCccEEEEEc----CCCcEEEEEc
Confidence 247999999877644311 234557788844 45677666553 5678999999
Q ss_pred CCCceEEEEEecc-CceeecccccccCC-----------------CCccccCCeEEEEeccCCceEEEEEeCCCcee
Q 004067 347 KTGQRKVILVEEL-DSWVNLHDCFTPLD-----------------KGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 405 (776)
Q Consensus 347 ~~g~~~~l~~~~~-~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~ 405 (776)
.+++......... ..+. ..|+|.+ ..+.++++.++++...+| .|++|++..++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~--~i~~wd~~~~~~ 362 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSM---EHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATS--SIVMFSLNELSS 362 (437)
T ss_dssp TTTEEEEEEESSSSCCCG---GGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGT--EEEEEETTCGGG
T ss_pred CCCcEEEEEEcCCCCCcc---ceecccccccccceecccccCCceEEEEECCceEEEecCCCC--eEEEEECCCccc
Confidence 9888655544321 1110 1122211 113444556777777777 999999887753
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-12 Score=132.46 Aligned_cols=260 Identities=8% Similarity=-0.041 Sum_probs=163.6
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCc----cceecCCCCCCCccCceeCCCCC-EEEEEEC-CcEEEEec
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSK----PELKLSSSSCSPVIDPHLSSDGT-MIAFVRD-CELHVLNL 197 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~----~~~~l~~~~~~~~~~~~~SpDg~-~la~~~~-~~l~~~~l 197 (776)
..+....|+| ||+.|+.. .++.|++||+.+++ .. .+.... ..+..+.|+|||+ .|+.... +.|++|++
T Consensus 12 ~~v~~~~~s~---~~~~l~~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 12 DYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLL-QSLRYK-HPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCEEEEEEEG---GGTEEEEEETTSEEEEEEEETTTTEEEEE-EEEECS-SCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CcEEEEEEcC---CCCEEEEEcCCCeEEEEEeCCCCccccce-eeeecC-CceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 4688999999 99998876 67899999999887 44 333333 3488899999999 8888774 57999999
Q ss_pred -CCCceeEEee--CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 198 -LINEQRQLTH--GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 198 -~~g~~~~lt~--~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
.+++...+.. ... .+..+.|+| ++.|+....+
T Consensus 87 ~~~~~~~~~~~~~~~~------------------~v~~l~~~~-~~~l~s~~~d-------------------------- 121 (342)
T 1yfq_A 87 IGSPSFQALTNNEANL------------------GICRICKYG-DDKLIAASWD-------------------------- 121 (342)
T ss_dssp SSSSSEEECBSCCCCS------------------CEEEEEEET-TTEEEEEETT--------------------------
T ss_pred ccCCceEeccccCCCC------------------ceEEEEeCC-CCEEEEEcCC--------------------------
Confidence 8887755543 211 145788999 8888876533
Q ss_pred CCCCCCCCCeEEEEEEEcCC---------CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEE
Q 004067 275 YPFAGASNVKVRLGVVSAAG---------GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 345 (776)
..|.+||+.+ ++.... ..+...+..+.|+|++ ++... .+..|.+||
T Consensus 122 ----------~~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~--l~~~~----~d~~i~i~d 176 (342)
T 1yfq_A 122 ----------GLIEVIDPRNYGDGVIAVKNLNSNN---------TKVKNKIFTMDTNSSR--LIVGM----NNSQVQWFR 176 (342)
T ss_dssp ----------SEEEEECHHHHTTBCEEEEESCSSS---------SSSCCCEEEEEECSSE--EEEEE----STTEEEEEE
T ss_pred ----------CeEEEEcccccccccccccCCeeeE---------EeeCCceEEEEecCCc--EEEEe----CCCeEEEEE
Confidence 3478888765 332111 2356678899999998 44443 344699999
Q ss_pred CCC-Cce--EEEEEeccCceeecccccccCCCCccccC--CeEEEEeccCCceEEEEEeCCCc-------eeeccccCCe
Q 004067 346 IKT-GQR--KVILVEELDSWVNLHDCFTPLDKGVTKYS--GGFIWASEKTGFRHLYLHDINGT-------CLGPITEGDW 413 (776)
Q Consensus 346 ~~~-g~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~g~~~l~~~~~~g~-------~~~~lt~~~~ 413 (776)
+.+ +.. ......... .. ..+.+.+ +.++++...+| .+.+|+.+.+ ....+..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~-~i----------~~i~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T 1yfq_A 177 LPLCEDDNGTIEESGLKY-QI----------RDVALLPKEQEGYACSSIDG--RVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp SSCCTTCCCEEEECSCSS-CE----------EEEEECSGGGCEEEEEETTS--EEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred CCccccccceeeecCCCC-ce----------eEEEECCCCCCEEEEEecCC--cEEEEEEcCCCcccccccceeeecccc
Confidence 987 553 222211111 00 0112222 33566666677 6666665543 2333333322
Q ss_pred ---------EEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC-CC-eEEEEEcCCcCEEEEE
Q 004067 414 ---------MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KG-KHVAVLDHNMRNFVDF 482 (776)
Q Consensus 414 ---------~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~~-~~~~~~spdg~~l~~~ 482 (776)
.+..+ .|+|+|+.|+..+ .++. +.+|.+. .+. .+..+... .+ +..+. |||+.|+..
T Consensus 244 ~~~~~~~~~~i~~~-~~s~~~~~l~~~~-~dg~--i~vwd~~---~~~----~~~~~~~~h~~~v~~~~--~~~~~l~s~ 310 (342)
T 1yfq_A 244 NLKDTNLAYPVNSI-EFSPRHKFLYTAG-SDGI--ISCWNLQ---TRK----KIKNFAKFNEDSVVKIA--CSDNILCLA 310 (342)
T ss_dssp CTTCCSSCCCEEEE-EECTTTCCEEEEE-TTSC--EEEEETT---TTE----EEEECCCCSSSEEEEEE--ECSSEEEEE
T ss_pred cccccccceeEEEE-EEcCCCCEEEEec-CCce--EEEEcCc---cHh----HhhhhhcccCCCceEec--CCCCeEEEE
Confidence 45555 4999999765444 3432 6666554 232 34555554 33 44555 999988887
Q ss_pred eeC
Q 004067 483 HDS 485 (776)
Q Consensus 483 ~~~ 485 (776)
...
T Consensus 311 s~D 313 (342)
T 1yfq_A 311 TSD 313 (342)
T ss_dssp EEC
T ss_pred ecC
Confidence 654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-11 Score=122.87 Aligned_cols=267 Identities=9% Similarity=-0.022 Sum_probs=167.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.| |||++|+..+.+ ..|.+||+.+++........ ...+....|+|
T Consensus 21 v~~~~~-~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~-----------------------~~~v~~~~~~~-- 69 (313)
T 3odt_A 21 VRDVVA-VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYTG-----------------------QGFLNSVCYDS-- 69 (313)
T ss_dssp EEEEEE-EETTEEEEEETT-----SEEEEEEESSSEEEEEEEEC-----------------------SSCEEEEEEET--
T ss_pred cEEEEe-cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeecC-----------------------CccEEEEEECC--
Confidence 478889 999999866542 46999999888764444211 24688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCcc---ceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKP---ELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~---~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
||+.|+.. .++.|.+|++..... ...+.... ..+..+.| +++.++.... +.|.+|+ .++..........
T Consensus 70 -~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~ 143 (313)
T 3odt_A 70 -EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ-GNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA 143 (313)
T ss_dssp -TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS-SCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred -CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc-cCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence 99999876 778899999876532 21333322 23555666 7778877765 4688998 3333222222111
Q ss_pred CceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
.+..+.|+| +++.|+....+ ..|.+|
T Consensus 144 -----------------~v~~~~~~~~~~~~l~~~~~d------------------------------------~~i~i~ 170 (313)
T 3odt_A 144 -----------------SVWDAKVVSFSENKFLTASAD------------------------------------KTIKLW 170 (313)
T ss_dssp -----------------CEEEEEEEETTTTEEEEEETT------------------------------------SCEEEE
T ss_pred -----------------ceeEEEEccCCCCEEEEEECC------------------------------------CCEEEE
Confidence 134667877 88888776533 236888
Q ss_pred EcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe-ccCceeeccccc
Q 004067 291 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNLHDCF 369 (776)
Q Consensus 291 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~~~~~ 369 (776)
|.. .....+. ..+...+..+.|+|+++ ++... .+..|.+||+.+++....... ......
T Consensus 171 d~~-~~~~~~~--------~~~~~~i~~~~~~~~~~-~~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~i~~------ 230 (313)
T 3odt_A 171 QND-KVIKTFS--------GIHNDVVRHLAVVDDGH-FISCS----NDGLIKLVDMHTGDVLRTYEGHESFVYC------ 230 (313)
T ss_dssp ETT-EEEEEEC--------SSCSSCEEEEEEEETTE-EEEEE----TTSEEEEEETTTCCEEEEEECCSSCEEE------
T ss_pred ecC-ceEEEEe--------ccCcccEEEEEEcCCCe-EEEcc----CCCeEEEEECCchhhhhhhhcCCceEEE------
Confidence 822 2222221 22566789999999998 55444 345699999998876554442 222111
Q ss_pred ccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 370 TPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+.+.+++.+++...+| .|++|++..++. ..+..+...+..+. |+++|+ ++ .+..++. +.+|.+.
T Consensus 231 ------~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~-~~~~dg~--i~iw~~~ 295 (313)
T 3odt_A 231 ------IKLLPNGDIVSCGEDR--TVRIWSKENGSLKQVITLPAISIWSVD-CMSNGD-II-VGSSDNL--VRIFSQE 295 (313)
T ss_dssp ------EEECTTSCEEEEETTS--EEEEECTTTCCEEEEEECSSSCEEEEE-ECTTSC-EE-EEETTSC--EEEEESC
T ss_pred ------EEEecCCCEEEEecCC--EEEEEECCCCceeEEEeccCceEEEEE-EccCCC-EE-EEeCCCc--EEEEeCC
Confidence 1222333455555666 899999876654 44555555566654 999998 33 3444433 6777765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-12 Score=131.64 Aligned_cols=124 Identities=14% Similarity=0.175 Sum_probs=84.6
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+..++|||||++++.....+ ..|+++|+++++.......... +. .....+..+.|+|
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~----~~i~~~d~~t~~~~~~~~~~~~--------~~---------~~~~~~~~~~~sp- 101 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHY----GDIYGIDLDTCKNTFHANLSSV--------PG---------EVGRSMYSFAISP- 101 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTT----TEEEEEETTTTEEEEEEESCCS--------TT---------EEEECSSCEEECT-
T ss_pred CCceeEECCCCCEEEEEeCCC----CcEEEEeCCCCcEEEEEEcccc--------cc---------cccccccceEECC-
Confidence 358899999999887665433 5799999999886544421110 00 0011256789999
Q ss_pred CCCceEEEEeC-------------CCcEEEEeCCCCccceec--CCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCC
Q 004067 136 SSKKKIIMVPL-------------PDGIYFQDLSCSKPELKL--SSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLIN 200 (776)
Q Consensus 136 ~~dg~~l~~~~-------------~~~l~~~d~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g 200 (776)
||++|++.. .+.|++||+++++....+ ...+. .+..++|||||+ +|+..++|+++|++++
T Consensus 102 --dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~--l~~~~~~i~~~d~~~~ 176 (349)
T 1jmx_B 102 --DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDGS--LYVAGPDIYKMDVKTG 176 (349)
T ss_dssp --TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEEECTTSC--EEEESSSEEEECTTTC
T ss_pred --CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC-cccceeECCCCc--EEEccCcEEEEeCCCC
Confidence 999999875 478999999886543111 11222 356677999999 4556778999999998
Q ss_pred ceeEEe
Q 004067 201 EQRQLT 206 (776)
Q Consensus 201 ~~~~lt 206 (776)
+.....
T Consensus 177 ~~~~~~ 182 (349)
T 1jmx_B 177 KYTVAL 182 (349)
T ss_dssp CEEEEE
T ss_pred ceeccc
Confidence 866543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=131.18 Aligned_cols=202 Identities=10% Similarity=0.091 Sum_probs=137.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+..+.+ ..|.+|++.++..+.+.... .+...+..+.|+|
T Consensus 14 v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~---------------------~h~~~v~~~~~~~-- 65 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLT---------------------GHEGPVWRVDWAH-- 65 (379)
T ss_dssp EEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEEEC---------------------CCSSCEEEEEECC--
T ss_pred EEEEEEcCCCCEEEEEECC-----CcEEEEecCCCcceeeeEec---------------------CCCCcEEEEEeCC--
Confidence 4789999999999966542 35999999855433322110 0124688999998
Q ss_pred CC--ceEEEEe-CCCcEEEEeCCCCc--cceecCCCCCCCccCceeCCC--CCEEEEEEC-CcEEEEecCCCce-eEEee
Q 004067 137 SK--KKIIMVP-LPDGIYFQDLSCSK--PELKLSSSSCSPVIDPHLSSD--GTMIAFVRD-CELHVLNLLINEQ-RQLTH 207 (776)
Q Consensus 137 ~d--g~~l~~~-~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~~~~SpD--g~~la~~~~-~~l~~~~l~~g~~-~~lt~ 207 (776)
+ ++.|+.. .++.|.+||+.+++ ....+.... ..+..+.|+|+ |+.|+.... +.|.+|++.++.. ..+..
T Consensus 66 -~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 66 -PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp -GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred -CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC-cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe
Confidence 7 8888876 67899999999986 321333333 34888999999 998888875 5799999988732 22221
Q ss_pred CCCCCceecCCcccceecccCCcceEEECC-------------CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSL-------------DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-------------Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
.... ..+..+.|+| |++.|+....+
T Consensus 144 ~~~~----------------~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------------------- 181 (379)
T 3jrp_A 144 DAHA----------------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------------------------- 181 (379)
T ss_dssp ECCT----------------TCEEEEEECCCC----------CTTCEEEEEETT--------------------------
T ss_pred cCCC----------------CceEEEEEcCccccccccccCCCCCCEEEEEeCC--------------------------
Confidence 1110 1145788999 68888776643
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceE--EEEcccCCCCCCCCcceEEEEEeccC---CeEEEEEEeecCceEEEEEEECCCC
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVS--WMDLQCGGTDQNYDEEYLARVNWMHG---NILTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~SpD---g~~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
..|++||+.+++.. .+.. +..+...+..++|+|| ++.++... .+..|.+||+.++
T Consensus 182 ----------g~i~i~d~~~~~~~~~~~~~------~~~h~~~v~~~~~sp~~~~~~~l~s~~----~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 182 ----------NLVKIWKYNSDAQTYVLEST------LEGHSDWVRDVAWSPTVLLRSYLASVS----QDRTCIIWTQDNE 241 (379)
T ss_dssp ----------SCEEEEEEETTTTEEEEEEE------ECCCSSCEEEEEECCCCSSSEEEEEEE----TTSCEEEEEESST
T ss_pred ----------CeEEEEEecCCCcceeeEEE------EecccCcEeEEEECCCCCCCCeEEEEe----CCCEEEEEeCCCC
Confidence 23788888766422 1111 1456678999999999 78777665 3445899999887
Q ss_pred c
Q 004067 350 Q 350 (776)
Q Consensus 350 ~ 350 (776)
.
T Consensus 242 ~ 242 (379)
T 3jrp_A 242 Q 242 (379)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-10 Score=118.45 Aligned_cols=292 Identities=12% Similarity=0.066 Sum_probs=166.4
Q ss_pred CceEEEEeCC--C----cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-----------CCcEEEEecCCC
Q 004067 138 KKKIIMVPLP--D----GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-----------DCELHVLNLLIN 200 (776)
Q Consensus 138 dg~~l~~~~~--~----~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-----------~~~l~~~~l~~g 200 (776)
|++++++... . .|+++|..+++....+..+. .. .+.+||||+.+++.. ++.|.++|+++.
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~--~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC--CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 8877665521 2 78999999988764444432 23 899999999987774 234889999887
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+...-..-+.......+ .....++|||||++|++......
T Consensus 108 ~~~~~i~~~~~~~~~~g----------~~p~~~~~spDG~~l~v~n~~~~------------------------------ 147 (373)
T 2mad_H 108 LPIADIELPDAPRFDVG----------PYSWMNANTPNNADLLFFQFAAG------------------------------ 147 (373)
T ss_pred cEEEEEECCCccccccC----------CCccceEECCCCCEEEEEecCCC------------------------------
Confidence 65432222100000000 00236789999999987653211
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
..|.++| ++++....-++ .+. .+.+.|+++..++... .+..+..+|. +++........ .
T Consensus 148 ----~~v~viD-~t~~~~~~~i~------~~~-----~~~~~~~~~~~~~~~~---~dg~~~~vd~-~g~~~~~~~~~-~ 206 (373)
T 2mad_H 148 ----PAVGLVV-QGGSSDDQLLS------SPT-----CYHIHPGAPSTFYLLC---AQGGLAKTDH-AGGAAGAGLVG-A 206 (373)
T ss_pred ----CeEEEEE-CCCCEEeEEcC------CCc-----eEEEEeCCCceEEEEc---CCCCEEEEEC-CCcEEEEEecc-c
Confidence 3478899 88876432021 111 1445677654443322 2344667777 66544221100 0
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecccc----------CCeEE--EEEEeecCCCcEE
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE----------GDWMV--EQIVGVNEASGQV 428 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~----------~~~~~--~~~~~~s~dg~~i 428 (776)
.+....+.+.. .....++++++|.+ ..+ +++++|..++..+.+.. ..+.. .....+++|++++
T Consensus 207 ~~~~~~p~~~~--~~~~~~~~~~~~~~-~~~--~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 207 MLTAAQNLLTQ--PAQANKSGRIVWPV-YSG--KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred cccCCcceeec--ceeEecCCEEEEEc-CCc--eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 00000000000 00122345667766 344 89999987654332221 01111 1234589999999
Q ss_pred EEEEccCC-----CceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCcee
Q 004067 429 YFTGTLDG-----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 503 (776)
Q Consensus 429 ~~~~~~~~-----~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~ 503 (776)
|+...... .....|+.+++.+ ++ ...++..+.....+.|||||++++|+.+... ..|.++|..+++.+
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t-~~----vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~--~~V~ViD~~t~~vv 354 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLV-GQ----TSSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQD 354 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCC-CE----EEEEEECCCCcCeEEECCCCCeEEEEEcCCC--CeEEEEECCCCCEE
Confidence 98764311 0124789999842 22 4566766556778999999997888766322 47999999998876
Q ss_pred Ee
Q 004067 504 LP 505 (776)
Q Consensus 504 ~~ 505 (776)
+.
T Consensus 355 ~~ 356 (373)
T 2mad_H 355 QS 356 (373)
T ss_pred ee
Confidence 65
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-11 Score=122.44 Aligned_cols=199 Identities=10% Similarity=0.072 Sum_probs=131.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc---eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK---QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+..++|||||++||-.+.+ ..|.+|+++++. ...+..|. ..+....|+
T Consensus 12 V~~~~~s~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~------------------------~~V~~v~~s 62 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHE------------------------GPVWRVDWA 62 (297)
T ss_dssp EEEEEECTTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCS------------------------SCEEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEcccc------------------------CCeEEEEec
Confidence 4788999999999966542 469999997543 23444332 368899998
Q ss_pred ecCCC--ceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCC--CCEEEEEEC-CcEEEEecCCCcee-E
Q 004067 134 KTSSK--KKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSD--GTMIAFVRD-CELHVLNLLINEQR-Q 204 (776)
Q Consensus 134 p~~~d--g~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpD--g~~la~~~~-~~l~~~~l~~g~~~-~ 204 (776)
| + |+.|+.. .++.|.+||+.+++.. ..+.... ..+..+.|+|+ |+.|+..+. +.|.+|++.++... .
T Consensus 63 ~---~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 63 H---PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp C---GGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS-SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred C---CCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC-CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 7 5 7777765 7889999999987532 1233233 34788999998 888887765 57999999876321 1
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCC-------------CeEEEEEecCCCCCeEEEeecCCCCCCCCCcc
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDS-------------KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE 271 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg-------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (776)
....+.. ..+..++|+|++ +.|+..+.|
T Consensus 139 ~~~~~h~----------------~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D----------------------- 179 (297)
T 2pm7_B 139 IIIDAHA----------------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD----------------------- 179 (297)
T ss_dssp EEEECCS----------------SCEEEEEECCCC------------CCEEEEEETT-----------------------
T ss_pred eeeeccc----------------CccceEeecCCcccccccCCCCCCcceEEEEcCC-----------------------
Confidence 1111110 114578899974 455554432
Q ss_pred eecCCCCCCCCCeEEEEEEEcCCCceE--EEEcccCCCCCCCCcceEEEEEeccCC---eEEEEEEeecCceEEEEEEEC
Q 004067 272 DHAYPFAGASNVKVRLGVVSAAGGPVS--WMDLQCGGTDQNYDEEYLARVNWMHGN---ILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 272 ~~~~~~~g~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~SpDg---~~l~~~~~~~~~~~~l~~~d~ 346 (776)
..|.+||+.+++.. .+.. +..+...+..++|+||+ ++|+..+ .+..|.+||+
T Consensus 180 -------------~~v~lwd~~~~~~~~~~~~~------l~~H~~~V~~v~~sp~~~~~~~las~s----~D~~v~iWd~ 236 (297)
T 2pm7_B 180 -------------NLVKIWKYNSDAQTYVLEST------LEGHSDWVRDVAWSPTVLLRSYMASVS----QDRTCIIWTQ 236 (297)
T ss_dssp -------------SCEEEEEEETTTTEEEEEEE------ECCCSSCEEEEEECCCCSSSEEEEEEE----TTSCEEEEEE
T ss_pred -------------CcEEEEEEcCCCceEEEEEE------ecCCCCceEEEEECCCCCCceEEEEEE----CCCcEEEEEe
Confidence 23788888776521 1111 14677789999999995 6666655 3456888998
Q ss_pred CCCc
Q 004067 347 KTGQ 350 (776)
Q Consensus 347 ~~g~ 350 (776)
+++.
T Consensus 237 ~~~~ 240 (297)
T 2pm7_B 237 DNEQ 240 (297)
T ss_dssp SSTT
T ss_pred CCCC
Confidence 7643
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=125.79 Aligned_cols=208 Identities=17% Similarity=0.098 Sum_probs=129.4
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCc--EEEEECCCCCCCC---chhh---hhhh-----hhc-cCC--c
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI--LVWKLDNRGTARR---GLKF---EASI-----KHN-CGR--I 617 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~--~v~~~d~rg~g~~---~~~~---~~~~-----~~~-~~~--~ 617 (776)
.+.|||+||..++.. .|..+++.|++.|| .|+.+|.+++|.. |... ..+. ... .+. .
T Consensus 6 ~~pvvliHG~~~~~~-------~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~ 78 (249)
T 3fle_A 6 TTATLFLHGYGGSER-------SETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKE 78 (249)
T ss_dssp CEEEEEECCTTCCGG-------GTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHH
T ss_pred CCcEEEECCCCCChh-------HHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHH
Confidence 367888999776644 45667899999986 5888888777642 1100 0000 000 001 1
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-----ceEEEEEcCCCCCcc-cccccccc-cc--cC
Q 004067 618 DAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWD-GYDTFYTE-KY--MG 688 (776)
Q Consensus 618 ~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-----~~~~~v~~~~~~~~~-~~~~~~~~-~~--~~ 688 (776)
..+++.++++.+.++.. ..++.++||||||.+++.++.++|. +++.+|.+++..+.. .....-.. ++ .+
T Consensus 79 ~~~~l~~~i~~l~~~~~--~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~~g 156 (249)
T 3fle_A 79 NAYWIKEVLSQLKSQFG--IQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVDKQG 156 (249)
T ss_dssp HHHHHHHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTTSCBCTTC
T ss_pred HHHHHHHHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcchhhhcccC
Confidence 25567777888877653 4589999999999999999998763 688888776543321 11100000 11 11
Q ss_pred CCCCCccchhcC-ChhhhhccCCCcEEEEecC------CCCccChHHHHHHHHHHHHCCCCeEEEEecC--CCCCCCCCC
Q 004067 689 LPSEDPVGYEYS-SVMHHVHKMKGKLLLVHGM------IDENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRRHR 759 (776)
Q Consensus 689 ~~~~~~~~~~~~-~~~~~~~~i~~P~lii~G~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H~~~~~~ 759 (776)
.|......|... .....+++.+.|+|.|+|. .|..||...++.+...++......+.+++.| +.|.....
T Consensus 157 ~p~~~~~~~~~l~~~~~~~p~~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g~~a~Hs~l~~- 235 (249)
T 3fle_A 157 KPSRMNAAYRQLLSLYKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKGAKAQHSQLHE- 235 (249)
T ss_dssp CBSSCCHHHHHTGGGHHHHTTTTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEESGGGSTGGGGG-
T ss_pred CCcccCHHHHHHHHHHhhCCccCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeCCCCchhcccc-
Confidence 222212222221 1122344456799999998 6999999988877776665556666677765 88987443
Q ss_pred cHHHHHHHHHHHH
Q 004067 760 DRIYMEERIWEFI 772 (776)
Q Consensus 760 ~~~~~~~~~~~fl 772 (776)
..++.+.+.+||
T Consensus 236 -n~~V~~~I~~FL 247 (249)
T 3fle_A 236 -NKDVANEIIQFL 247 (249)
T ss_dssp -CHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHh
Confidence 457888888887
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-13 Score=133.11 Aligned_cols=208 Identities=14% Similarity=0.009 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcE---E----------EEECCCCCCCCchhhhhhhh--hccC-Ccc
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---V----------WKLDNRGTARRGLKFEASIK--HNCG-RID 618 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~---v----------~~~d~rg~g~~~~~~~~~~~--~~~~-~~~ 618 (776)
+.|||+||.+++.. .|..++..|+++++. + +.+|.++.+....+...... .... ...
T Consensus 4 ~pvvllHG~~~~~~-------~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (254)
T 3ds8_A 4 IPIILIHGSGGNAS-------SLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDW 76 (254)
T ss_dssp CCEEEECCTTCCTT-------TTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHH
T ss_pred CCEEEECCCCCCcc-------hHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHH
Confidence 46789999876643 355678888887653 2 33443222211111000000 0000 112
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-----ceEEEEEcCCCCCcccccccccc-cccCCCCC
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWDGYDTFYTE-KYMGLPSE 692 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~ 692 (776)
.+++.++++.+.++.. ..++.++||||||.+++.++.++|+ .++++|++++..+.......... .+.+.|..
T Consensus 77 a~~l~~~i~~l~~~~~--~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~p~~ 154 (254)
T 3ds8_A 77 SKWLKIAMEDLKSRYG--FTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFKKLPNS 154 (254)
T ss_dssp HHHHHHHHHHHHHHHC--CSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCSCTTCSSCSSC
T ss_pred HHHHHHHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccccccccccCCcc
Confidence 4556666677776643 3689999999999999999999988 88999988876543211100000 00111211
Q ss_pred CccchhcC-ChhhhhccCCCcEEEEecC------CCCccChHHHHHHHHHHHHCCCCeEEEEecC--CCCCCCCCCcHHH
Q 004067 693 DPVGYEYS-SVMHHVHKMKGKLLLVHGM------IDENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRRHRDRIY 763 (776)
Q Consensus 693 ~~~~~~~~-~~~~~~~~i~~P~lii~G~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H~~~~~~~~~~ 763 (776)
...+... .....+.+ +.|++.|+|. .|.+||+..+..+...+......++..++.+ ++|.... ++ .+
T Consensus 155 -~~~~~~~~~~~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g~~a~Hs~l~-~~-~~ 230 (254)
T 3ds8_A 155 -TPQMDYFIKNQTEVSP-DLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVGEDAVHQTLH-ET-PK 230 (254)
T ss_dssp -CHHHHHHHHTGGGSCT-TCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEESGGGCGGGGG-GS-HH
T ss_pred -hHHHHHHHHHHhhCCC-CcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeCCCCchhccc-CC-HH
Confidence 1111100 00111222 5799999999 9999999998888776654434456666666 6797633 33 35
Q ss_pred HHHHHHHHHHHh
Q 004067 764 MEERIWEFIERT 775 (776)
Q Consensus 764 ~~~~~~~fl~~~ 775 (776)
+.+.+..||+++
T Consensus 231 v~~~i~~fL~~~ 242 (254)
T 3ds8_A 231 SIEKTYWFLEKF 242 (254)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 889999999865
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=149.71 Aligned_cols=210 Identities=17% Similarity=0.160 Sum_probs=137.0
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC-cEEEEECCC----CCCCCchhhhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-ILVWKLDNR----GTARRGLKFEASIK 611 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v~~~d~r----g~g~~~~~~~~~~~ 611 (776)
+...+|.|.... +++|+||++|||+........+ ......|+++| ++|+.+||| |++.... +..
T Consensus 83 L~l~v~~P~~~~---~~~PviV~iHGGg~~~g~~~~~----~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~-~~~--- 151 (489)
T 1qe3_A 83 LYVNVFAPDTPS---QNLPVMVWIHGGAFYLGAGSEP----LYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSS-FDE--- 151 (489)
T ss_dssp CEEEEEEECSSC---CSEEEEEEECCSTTTSCCTTSG----GGCCHHHHHHHTCEEEEECCCCHHHHSCCCTT-TCT---
T ss_pred CEEEEEeCCCCC---CCCCEEEEECCCccccCCCCCc----ccCHHHHHhcCCEEEEecCccCcccccCcccc-ccc---
Confidence 667788886531 3589999999987432211111 11245566654 999999999 3322211 110
Q ss_pred hccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCCCccccccc--ccc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTSWDGYDTF--YTE 684 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~~~~~~~~~--~~~ 684 (776)
...+...+.|+..+++|+.++ ...|+++|+|+|+|+||++++.++... +.+|+++|+.+|..++...... +..
T Consensus 152 ~~~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~ 231 (489)
T 1qe3_A 152 AYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAA 231 (489)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 122334578999999999875 346899999999999999999888753 5789999999998754332110 001
Q ss_pred c---ccCCCCCCccchhcCChhhhh---------ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCC
Q 004067 685 K---YMGLPSEDPVGYEYSSVMHHV---------HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 752 (776)
Q Consensus 685 ~---~~~~~~~~~~~~~~~~~~~~~---------~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 752 (776)
. .++.+.+..+-+...+....+ .....|.+++++..|..+.+.+..++++..+..++++.+-..++++
T Consensus 232 ~~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~~~g~~~~Eg 311 (489)
T 1qe3_A 232 AFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRDEG 311 (489)
T ss_dssp HHHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETTGG
T ss_pred HHHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCCCCCCCEEEeeecchh
Confidence 1 123332222222222221111 1223457888999999999998888888887788999999999999
Q ss_pred CCCCC
Q 004067 753 HMPRR 757 (776)
Q Consensus 753 H~~~~ 757 (776)
|.+..
T Consensus 312 ~~~~~ 316 (489)
T 1qe3_A 312 YLFFT 316 (489)
T ss_dssp GGTCC
T ss_pred Hhhcc
Confidence 98743
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-10 Score=123.38 Aligned_cols=308 Identities=12% Similarity=0.024 Sum_probs=192.2
Q ss_pred eeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 60 IGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
..+++||++|+..+.+ ..|.+||+.+++....... +...+....|++
T Consensus 123 ~~~~~~g~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~-----------------------h~~~v~~~~~~~----- 169 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDD-----NTLKVWSAVTGKCLRTLVG-----------------------HTGGVWSSQMRD----- 169 (445)
T ss_dssp EEEEEETTEEEEEETT-----SCEEEEETTTCCEEEECCC-----------------------CSSCEEEEEEET-----
T ss_pred EEEEEcCCEEEEEECC-----CcEEEEECCCCcEEEEEcC-----------------------CCCCEEEEEecC-----
Confidence 3688999999865542 4699999998876443321 123677777764
Q ss_pred eEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCceecC
Q 004067 140 KIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 140 ~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
+.|+. ..++.|.+||+.+++....+..... .+..+.| +++.++..+. +.|.+|++.+++..........
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~------ 240 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTS-TVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA------ 240 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS------
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEECCCCC-cEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc------
Confidence 34554 4788999999999887644443332 3666666 4667777664 5799999998876544332211
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
.+..+.| ||+.|+....+ ..|.+||+.+++.
T Consensus 241 -----------~v~~~~~--~~~~l~~~~~d------------------------------------g~i~iwd~~~~~~ 271 (445)
T 2ovr_B 241 -----------AVRCVQY--DGRRVVSGAYD------------------------------------FMVKVWDPETETC 271 (445)
T ss_dssp -----------CEEEEEE--CSSCEEEEETT------------------------------------SCEEEEEGGGTEE
T ss_pred -----------cEEEEEE--CCCEEEEEcCC------------------------------------CEEEEEECCCCcE
Confidence 1334556 78888776543 2478999988765
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCcc
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVT 377 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (776)
...- ..+...+..+.| |++.++... .+..|.+||+.+++.......... ... .+ .
T Consensus 272 ~~~~--------~~~~~~v~~~~~--~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~-~v~---~~-------~ 326 (445)
T 2ovr_B 272 LHTL--------QGHTNRVYSLQF--DGIHVVSGS----LDTSIRVWDVETGNCIHTLTGHQS-LTS---GM-------E 326 (445)
T ss_dssp EEEE--------CCCSSCEEEEEE--CSSEEEEEE----TTSCEEEEETTTCCEEEEECCCCS-CEE---EE-------E
T ss_pred eEEe--------cCCCCceEEEEE--CCCEEEEEe----CCCeEEEEECCCCCEEEEEcCCcc-cEE---EE-------E
Confidence 4331 345567788888 787777665 345699999998876443322211 100 01 2
Q ss_pred ccCCeEEEEeccCCceEEEEEeCCCce-eecccc---CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCC
Q 004067 378 KYSGGFIWASEKTGFRHLYLHDINGTC-LGPITE---GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNH 453 (776)
Q Consensus 378 ~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~---~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~ 453 (776)
++ +.++++...+| .|.+||+..++ ...+.. +...+..+. | +++.+ +++..++ .+.+|.+. .|.
T Consensus 327 ~~-~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~~l-~s~~~dg--~v~iwd~~---~~~- 393 (445)
T 2ovr_B 327 LK-DNILVSGNADS--TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-F--NKNFV-ITSSDDG--TVKLWDLK---TGE- 393 (445)
T ss_dssp EE-TTEEEEEETTS--CEEEEETTTCCEEEEECSTTSCSSCEEEEE-E--CSSEE-EEEETTS--EEEEEETT---TCC-
T ss_pred Ee-CCEEEEEeCCC--eEEEEECCCCcEEEEEccCCCCCCCEEEEE-E--CCCEE-EEEeCCC--eEEEEECC---CCc-
Confidence 22 33556666667 89999986654 344443 334455443 5 45654 4444443 36777654 343
Q ss_pred ccccceee------cCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 454 TLEAPVKL------TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 454 ~~~~~~~l------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
.+..+ .....+..+.|+|+|..++...........++++|+..
T Consensus 394 ---~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 394 ---FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ---EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ---eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 34444 11223678899999988888766655567899999854
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-11 Score=126.13 Aligned_cols=271 Identities=10% Similarity=0.032 Sum_probs=163.5
Q ss_pred CCeeeEEEeecCCC---ceEEEEe-CCCcEEEEeCCC-Cccc-eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEec
Q 004067 125 LGVTRYEWVKTSSK---KKIIMVP-LPDGIYFQDLSC-SKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNL 197 (776)
Q Consensus 125 ~~~~~~~~sp~~~d---g~~l~~~-~~~~l~~~d~~~-~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l 197 (776)
..+....|+| | |+.|+.. .++.|.+||+.+ +... ..+..... .+..+.|+|||+.|+..+. +.|.+|++
T Consensus 40 ~~v~~~~~~~---~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 40 DSIGCLSFSP---PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG-PVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCEEEEEECC---TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS-CEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CceEEEEEcC---CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC-CEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 4788999999 8 6888876 678999999987 4332 23443333 4888999999999998875 57999999
Q ss_pred CCCceeEEeeCCCCCceecCCcccceecccCCcceEEE--CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 198 LINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWW--SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 198 ~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
.+++...+...... +..+.| +||++.|+....+
T Consensus 116 ~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~~l~~~~~d--------------------------- 150 (368)
T 3mmy_A 116 SSNQAIQIAQHDAP------------------VKTIHWIKAPNYSCVMTGSWD--------------------------- 150 (368)
T ss_dssp TTTEEEEEEECSSC------------------EEEEEEEECSSCEEEEEEETT---------------------------
T ss_pred CCCCceeeccccCc------------------eEEEEEEeCCCCCEEEEccCC---------------------------
Confidence 99987765443221 457889 9999988876643
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
..|++||+.+++....- .....+..+.++++ .++... ....+.+|++..+......
T Consensus 151 ---------g~i~vwd~~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~----~~~~i~~~~~~~~~~~~~~ 206 (368)
T 3mmy_A 151 ---------KTLKFWDTRSSNPMMVL---------QLPERCYCADVIYP--MAVVAT----AERGLIVYQLENQPSEFRR 206 (368)
T ss_dssp ---------SEEEEECSSCSSCSEEE---------ECSSCEEEEEEETT--EEEEEE----GGGCEEEEECSSSCEEEEE
T ss_pred ---------CcEEEEECCCCcEEEEE---------ecCCCceEEEecCC--eeEEEe----CCCcEEEEEeccccchhhh
Confidence 35899999877644321 11123444555544 344443 2335888888765433221
Q ss_pred EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce----eeccccCCe------------EEEEEE
Q 004067 356 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC----LGPITEGDW------------MVEQIV 419 (776)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~----~~~lt~~~~------------~~~~~~ 419 (776)
...........-.+.+.. ...++ .+++...+| .|.+|+++... ...+..+.. .+..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 279 (368)
T 3mmy_A 207 IESPLKHQHRCVAIFKDK---QNKPT-GFALGSIEG--RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI- 279 (368)
T ss_dssp CCCSCSSCEEEEEEEECT---TSCEE-EEEEEETTS--EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE-
T ss_pred ccccccCCCceEEEcccC---CCCCC-eEEEecCCC--cEEEEecCCCCccccceeeeeeecccccccccccccceEEE-
Confidence 111000000000000100 00111 245555666 78888877653 223333222 35555
Q ss_pred eecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeC
Q 004067 420 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~ 485 (776)
.|+|+|+.|+..+ .++. +.+|.+. .+. .+..+..+. .+..+.|+|||+.|+.....
T Consensus 280 ~~sp~~~~l~s~~-~dg~--i~iwd~~---~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 280 AFHPVHGTLATVG-SDGR--FSFWDKD---ART----KLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp EECTTTCCEEEEE-TTSC--EEEEETT---TTE----EEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred EEecCCCEEEEEc-cCCe--EEEEECC---CCc----EEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 4999998765544 4432 6777654 232 445555543 46789999999999988653
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.7e-13 Score=135.39 Aligned_cols=199 Identities=12% Similarity=-0.049 Sum_probs=118.5
Q ss_pred CceEEEEEcCC--CCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGG--PCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~--~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
..|.||++||. +++.. .|..++..| ..+|.|+++|+||+|.+...... . . ...+++.+.++.+.
T Consensus 80 ~~~~lv~lhG~~~~~~~~-------~~~~~~~~L-~~~~~v~~~d~~G~G~~~~~~~~-~-~----~~~~~~~~~l~~~~ 145 (319)
T 3lcr_A 80 LGPQLILVCPTVMTTGPQ-------VYSRLAEEL-DAGRRVSALVPPGFHGGQALPAT-L-T----VLVRSLADVVQAEV 145 (319)
T ss_dssp SSCEEEEECCSSTTCSGG-------GGHHHHHHH-CTTSEEEEEECTTSSTTCCEESS-H-H----HHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCcCCCHH-------HHHHHHHHh-CCCceEEEeeCCCCCCCCCCCCC-H-H----HHHHHHHHHHHHhc
Confidence 34789999994 33322 345556777 78999999999999965432110 0 0 01233333333322
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhC---CCceEEEEEcCCCCCccc--cccccc--------cc---ccCCC--CC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWDG--YDTFYT--------EK---YMGLP--SE 692 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~---~~~~~~~v~~~~~~~~~~--~~~~~~--------~~---~~~~~--~~ 692 (776)
+..++.|+||||||.+++.+|.++ ++.++++|+.++...... ....+. .. +.... ..
T Consensus 146 -----~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
T 3lcr_A 146 -----ADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQ 220 (319)
T ss_dssp -----TTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred -----CCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhH
Confidence 235899999999999999999877 788888888776543211 000000 00 00000 00
Q ss_pred Ccc---chhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC-CCCCcHHHHHHHH
Q 004067 693 DPV---GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP-RRHRDRIYMEERI 768 (776)
Q Consensus 693 ~~~---~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~-~~~~~~~~~~~~~ 768 (776)
... .+...........+++|+|+++|.+ ..+++.....+.+.+. ...+++++++ +|.. ..++...++.+.+
T Consensus 221 ~l~~~~~~~~~~~~~~~~~i~~PvLli~g~~-~~~~~~~~~~~~~~~~---~~~~~~~~~g-~H~~~~~~~~~~~va~~i 295 (319)
T 3lcr_A 221 RITAQVWCLELLRGWRPEGLTAPTLYVRPAQ-PLVEQEKPEWRGDVLA---AMGQVVEAPG-DHFTIIEGEHVASTAHIV 295 (319)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSCEEEEEESS-CSSSCCCTHHHHHHHH---TCSEEEEESS-CTTGGGSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCEEEEEeCC-CCCCcccchhhhhcCC---CCceEEEeCC-CcHHhhCcccHHHHHHHH
Confidence 000 0000000011256789999999988 4556566666666553 4567888887 5654 3335889999999
Q ss_pred HHHHHHh
Q 004067 769 WEFIERT 775 (776)
Q Consensus 769 ~~fl~~~ 775 (776)
.+||.+.
T Consensus 296 ~~fL~~~ 302 (319)
T 3lcr_A 296 GDWLREA 302 (319)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999763
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-11 Score=127.08 Aligned_cols=243 Identities=9% Similarity=0.012 Sum_probs=156.5
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCC--CCEEEEEEC-CcEEEEecC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSD--GTMIAFVRD-CELHVLNLL 198 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpD--g~~la~~~~-~~l~~~~l~ 198 (776)
..+....|+| ||++|+.. .++.|.+||+.++... ..+..+. ..+..+.|+|+ ++.|+.... +.|.+|++.
T Consensus 12 ~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 87 (379)
T 3jrp_A 12 ELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-GPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 87 (379)
T ss_dssp CCEEEEEECS---SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred ccEEEEEEcC---CCCEEEEEECCCcEEEEecCCCcceeeeEecCCC-CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence 4788999999 99999987 6889999999854332 2344333 34788999988 898888775 579999999
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCC--CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD--SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+++...+...... ...+..+.|+|+ ++.|+....+
T Consensus 88 ~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~~~~~d---------------------------- 124 (379)
T 3jrp_A 88 NGRWSQIAVHAVH---------------SASVNSVQWAPHEYGPLLLVASSD---------------------------- 124 (379)
T ss_dssp TTEEEEEEEECCC---------------SSCEEEEEECCGGGCSEEEEEETT----------------------------
T ss_pred CCceeEeeeecCC---------------CcceEEEEeCCCCCCCEEEEecCC----------------------------
Confidence 9864333221110 011457889999 8888876643
Q ss_pred CCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEecc-------------CCeEEEEEEeecCceEEEE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMH-------------GNILTAQVLNRSQTKLKVL 342 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~~~~~~~~l~ 342 (776)
..|.+||+.++... .+.. ..+...+..+.|+| |++.++... .+..|+
T Consensus 125 --------~~i~v~d~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~ 185 (379)
T 3jrp_A 125 --------GKVSVVEFKENGTTSPIII-------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG----ADNLVK 185 (379)
T ss_dssp --------SEEEEEECCTTSCCCEEEE-------ECCTTCEEEEEECCCC----------CTTCEEEEEE----TTSCEE
T ss_pred --------CcEEEEecCCCCceeeEEe-------cCCCCceEEEEEcCccccccccccCCCCCCEEEEEe----CCCeEE
Confidence 35889999877422 2211 34566789999999 688777665 344689
Q ss_pred EEECCCCceE--EEEE---eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce----eecccc--C
Q 004067 343 KFDIKTGQRK--VILV---EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC----LGPITE--G 411 (776)
Q Consensus 343 ~~d~~~g~~~--~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~----~~~lt~--~ 411 (776)
+||+.++... .+.. +...... -.|+|.. ..+.++++...+| .|.+|++..+. ...+.. .
T Consensus 186 i~d~~~~~~~~~~~~~~~~h~~~v~~---~~~sp~~-----~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 255 (379)
T 3jrp_A 186 IWKYNSDAQTYVLESTLEGHSDWVRD---VAWSPTV-----LLRSYLASVSQDR--TCIIWTQDNEQGPWKKTLLKEEKF 255 (379)
T ss_dssp EEEEETTTTEEEEEEEECCCSSCEEE---EEECCCC-----SSSEEEEEEETTS--CEEEEEESSTTSCCEEEESSSSCC
T ss_pred EEEecCCCcceeeEEEEecccCcEeE---EEECCCC-----CCCCeEEEEeCCC--EEEEEeCCCCCccceeeeeccccC
Confidence 9998776532 2211 1211111 1233310 0045677777777 78888877652 222222 3
Q ss_pred CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 412 DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 412 ~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
...+..+. |+++|+.|+..+. ++ .+.+|.++.
T Consensus 256 ~~~v~~~~-~s~~g~~l~~~~~-dg--~i~iw~~~~ 287 (379)
T 3jrp_A 256 PDVLWRAS-WSLSGNVLALSGG-DN--KVTLWKENL 287 (379)
T ss_dssp SSCEEEEE-ECSSSCCEEEEES-SS--SEEEEEEEE
T ss_pred CCcEEEEE-EcCCCCEEEEecC-CC--cEEEEeCCC
Confidence 44455554 9999997766655 33 389999986
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=7e-12 Score=135.75 Aligned_cols=256 Identities=11% Similarity=0.040 Sum_probs=154.1
Q ss_pred CCCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 56 APTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.++.++||| ||++|+-.+. + ..|.+||+.++..+.+..... ....+..+.|+|
T Consensus 166 ~V~~l~f~p~~~~~l~s~s~-D----~~v~iwd~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~ 219 (435)
T 4e54_B 166 SITGLKFNPLNTNQFYASSM-E----GTTRLQDFKGNILRVFASSDT---------------------INIWFCSLDVSA 219 (435)
T ss_dssp CCCEEEECSSCTTEEEEECS-S----SCEEEEETTSCEEEEEECCSS---------------------CSCCCCCEEEET
T ss_pred CEEEEEEeCCCCCEEEEEeC-C----CEEEEeeccCCceeEEeccCC---------------------CCccEEEEEECC
Confidence 368999999 7888875443 2 469999999887766654322 012356789999
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeE-EeeCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQ-LTHGAN 210 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~-lt~~~~ 210 (776)
||+.|+.. .++.|++||+.+.... .+..+.. .+..+.|+|+++.++.+. ++.|.+||+.+++... +....
T Consensus 220 ---~~~~l~~g~~dg~i~~wd~~~~~~~-~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~- 293 (435)
T 4e54_B 220 ---SSRMVVTGDNVGNVILLNMDGKELW-NLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL- 293 (435)
T ss_dssp ---TTTEEEEECSSSBEEEEESSSCBCC-CSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC-
T ss_pred ---CCCEEEEEeCCCcEeeeccCcceeE-EEecccc-eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee-
Confidence 99999876 6789999999887766 6655443 488899999998665554 3568999988764321 11110
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
+.. ..+..++|||||+.|+..+.+ ..|.+|
T Consensus 294 ------~h~--------~~v~~~~~spdg~~l~s~~~D------------------------------------~~i~iw 323 (435)
T 4e54_B 294 ------PHR--------HPVNAACFSPDGARLLTTDQK------------------------------------SEIRVY 323 (435)
T ss_dssp ------BCS--------SCEEECCBCTTSSEEEEEESS------------------------------------SCEEEE
T ss_pred ------ecc--------ccccceeECCCCCeeEEEcCC------------------------------------CEEEEE
Confidence 001 114567899999999877643 247899
Q ss_pred EcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeec--------CceEEEEEEECCCCceEEEEEeccCce
Q 004067 291 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS--------QTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 291 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--------~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
|+.+++........... ...........|+|++..++...... .....|.+||..+|+............
T Consensus 324 d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~ 401 (435)
T 4e54_B 324 SASQWDCPLGLIPHPHR--HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSG 401 (435)
T ss_dssp ESSSSSSEEEECCCCCC--CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCC
T ss_pred ECCCCccceEEeccccc--ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCc
Confidence 99887654332211000 01111233467888887655543221 123468999999988654432221111
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG 406 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~ 406 (776)
+..-..|+| ++.++..+ .++ +|++|+++.++.+
T Consensus 402 v~s~~~fsp--------dg~~lasg-~d~--~i~iW~~~~gk~r 434 (435)
T 4e54_B 402 ISSLNEFNP--------MGDTLASA-MGY--HILIWSQQEARTR 434 (435)
T ss_dssp CCCEEEECT--------TSSCEEEE-CSS--EEEECCCC-----
T ss_pred EEEEEEECC--------CCCEEEEE-cCC--cEEEEECCcCeee
Confidence 111012333 23344443 344 7999999877654
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.9e-12 Score=124.69 Aligned_cols=214 Identities=15% Similarity=0.133 Sum_probs=128.5
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECC--------CCCCCCchhh
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--------RGTARRGLKF 606 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--------rg~g~~~~~~ 606 (776)
..+.+.+|.|.... ++.|+||.+||+. | ....||+++.+++ +|..+.+. |
T Consensus 90 ~~~~~~i~lP~~~~---~p~Pvii~i~~~~--------~----------~~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f 147 (375)
T 3pic_A 90 ISFTVTITYPSSGT---APYPAIIGYGGGS--------L----------PAPAGVAMINFNNDNIAAQVNTGSRGQGK-F 147 (375)
T ss_dssp EEEEEEEECCSSSC---SSEEEEEEETTCS--------S----------CCCTTCEEEEECHHHHSCCSSGGGTTCSH-H
T ss_pred eEEEEEEECCCCCC---CCccEEEEECCCc--------c----------ccCCCeEEEEecccccccccCCCCcccee-c
Confidence 45889999997642 6899999999841 1 1357999999986 33333333 3
Q ss_pred hhhh--hhccCCcc--HHHHHHHHHHHHHcC--CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC----cc
Q 004067 607 EASI--KHNCGRID--AEDQLTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS----WD 676 (776)
Q Consensus 607 ~~~~--~~~~~~~~--~~D~~~~i~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~----~~ 676 (776)
.... ...++... ..++.+++++|.+++ .||++||+++|||+||..|+++++..+ +|+++|...+..+ ++
T Consensus 148 ~~ly~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D~-Ri~~~v~~~~g~~G~~~~R 226 (375)
T 3pic_A 148 YDLYGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFEK-RIVLTLPQESGAGGSACWR 226 (375)
T ss_dssp HHHHCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTTSCHH
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcCC-ceEEEEeccCCCCchhhhh
Confidence 2111 12233322 358999999999998 899999999999999999999999865 6899998765432 22
Q ss_pred ccc--ccccccc------cC-CCCCCcc--chh------cCChhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHH--
Q 004067 677 GYD--TFYTEKY------MG-LPSEDPV--GYE------YSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINAL-- 736 (776)
Q Consensus 677 ~~~--~~~~~~~------~~-~~~~~~~--~~~------~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l-- 736 (776)
... ..+.+.. .+ ..|.... .|. ..+....++-+. .|+|++.| .|..+++......+..+
T Consensus 227 ~~~~~~~~Ge~v~~~~~~~~e~~Wf~~~~~~y~~~~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~~~g~~~~~~~a~~ 305 (375)
T 3pic_A 227 ISDYLKSQGANIQTASEIIGEDPWFSTTFNSYVNQVPVLPFDHHSLAALIAPRGLFVIDN-NIDWLGPQSCFGCMTAAHM 305 (375)
T ss_dssp HHHHHHHTTCCCCCHHHHTTTCSCSCGGGGGTTTCGGGSSCCHHHHHHTSTTSEEEEECC-CCGGGCHHHHHHHHHHHHH
T ss_pred hhhhhcccCccccccccccCcccccccchhhhcccccccCcCHHHHHHHhCCceEEEecC-CCcccCcHHHHHHHHHHHH
Confidence 100 0000000 00 1121111 111 012222333343 69999999 99888876554333333
Q ss_pred --HHCCC--CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 737 --VAARK--PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 737 --~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+..|. ++.+.+..+.+|+....+. .+.+.+||+++|
T Consensus 306 VY~~lG~~d~~~~~~~ggH~Hc~fp~~~----~~~~~~F~~k~L 345 (375)
T 3pic_A 306 AWQALGVSDHMGYSQIGAHAHCAFPSNQ----QSQLTAFVQKFL 345 (375)
T ss_dssp HHHHTTCGGGEEEECCSCCSTTCCCGGG----HHHHHHHHHHHT
T ss_pred HHHHcCCccceEEEeeCCCccccCCHHH----HHHHHHHHHHHh
Confidence 34454 5666543334554323233 367778888776
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-11 Score=123.67 Aligned_cols=267 Identities=12% Similarity=0.058 Sum_probs=164.5
Q ss_pred CCCceeEcCC---CCEEEEEeCCCCcCcceEEEEecCC-Cce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 004067 56 APTSIGFSPD---DNLITYLLSPDHSLSRKVFSFDPKT-CKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR 129 (776)
Q Consensus 56 ~~~~~~~SpD---G~~ia~~~~~~~~~~~~l~~~~~~~-~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (776)
.+..++|||| |++|+..+.+ ..|.+|++.+ +.. ..+..+ ...+..
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h------------------------~~~v~~ 91 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMH------------------------TGPVLD 91 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETT-----SEEEEEEECTTSCEEEEEEEEC------------------------SSCEEE
T ss_pred ceEEEEEcCCCCCceEEEEECCC-----CcEEEEEcCCCCceeEEEeccc------------------------cCCEEE
Confidence 3589999999 6888865542 4699999987 443 233332 246889
Q ss_pred EEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCcee--CCCCCEEEEEEC-CcEEEEecCCCceeEE
Q 004067 130 YEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHL--SSDGTMIAFVRD-CELHVLNLLINEQRQL 205 (776)
Q Consensus 130 ~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~--SpDg~~la~~~~-~~l~~~~l~~g~~~~l 205 (776)
..|+| ||+.|+.. .++.|.+||+.+++.. .+..... .+..+.| +||++.|+.... +.|.+|++.+++....
T Consensus 92 ~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 92 VCWSD---DGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp EEECT---TSSEEEEEETTSEEEEEETTTTEEE-EEEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred EEECc---CCCEEEEEcCCCcEEEEEcCCCCce-eeccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 99999 99999876 6788999999999877 5544433 4788999 999998888774 5799999998876544
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
...... ...+.+.+..++....+ .
T Consensus 167 ~~~~~~--------------------~~~~~~~~~~~~~~~~~------------------------------------~ 190 (368)
T 3mmy_A 167 LQLPER--------------------CYCADVIYPMAVVATAE------------------------------------R 190 (368)
T ss_dssp EECSSC--------------------EEEEEEETTEEEEEEGG------------------------------------G
T ss_pred EecCCC--------------------ceEEEecCCeeEEEeCC------------------------------------C
Confidence 333221 12233334445444422 2
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe----EEEEEEeecCceEEEEEEECCCCce----EEEEEe
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI----LTAQVLNRSQTKLKVLKFDIKTGQR----KVILVE 357 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~----~l~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~ 357 (776)
.+.+|++........... .........+.+.+++. .++... .+..|.+||+..+.. ..+..+
T Consensus 191 ~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 191 GLIVYQLENQPSEFRRIE------SPLKHQHRCVAIFKDKQNKPTGFALGS----IEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp CEEEEECSSSCEEEEECC------CSCSSCEEEEEEEECTTSCEEEEEEEE----TTSEEEEEESSCSCHHHHSEEEECS
T ss_pred cEEEEEeccccchhhhcc------ccccCCCceEEEcccCCCCCCeEEEec----CCCcEEEEecCCCCccccceeeeee
Confidence 367888876654433222 11222233344444332 244443 345688999987632 222222
Q ss_pred ccCc----------eeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCc
Q 004067 358 ELDS----------WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASG 426 (776)
Q Consensus 358 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~ 426 (776)
.... .+ ..-.|+| ++.++++...+| .|++|++.+++ ...+..+...+..+. |+|||+
T Consensus 261 ~~~~~~~~~~~~~~~v-~~~~~sp--------~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~g~ 328 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAV-NGIAFHP--------VHGTLATVGSDG--RFSFWDKDARTKLKTSEQLDQPISACC-FNHNGN 328 (368)
T ss_dssp EEC----CCCEEECCE-EEEEECT--------TTCCEEEEETTS--CEEEEETTTTEEEEECCCCSSCEEEEE-ECTTSS
T ss_pred ecccccccccccccce-EEEEEec--------CCCEEEEEccCC--eEEEEECCCCcEEEEecCCCCCceEEE-ECCCCC
Confidence 1100 00 0011222 233566666677 79999988765 455555556666665 999999
Q ss_pred EEEEEEcc
Q 004067 427 QVYFTGTL 434 (776)
Q Consensus 427 ~i~~~~~~ 434 (776)
.|+..+..
T Consensus 329 ~l~~~s~d 336 (368)
T 3mmy_A 329 IFAYASSY 336 (368)
T ss_dssp CEEEEECC
T ss_pred eEEEEecc
Confidence 87777664
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-10 Score=121.76 Aligned_cols=213 Identities=9% Similarity=0.091 Sum_probs=137.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-----EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEE
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-----ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYE 131 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (776)
+..++|||||++|+..+.+ ..|.+|++.++.. ..+..+ ...+....
T Consensus 14 v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~------------------------~~~v~~~~ 64 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAH------------------------DSSIVAID 64 (351)
T ss_dssp EEEEEECSSSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECC------------------------SSCEEEEE
T ss_pred eeEEEEcCCCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccC------------------------CCcEEEEE
Confidence 5889999999999866542 4699999987532 222222 24688999
Q ss_pred EeecCCC--ceEEEEe-CCCcEEEEeCCCCcc---------ceecCCCCCCCccCceeCCC--CCEEEEEEC-CcEEEEe
Q 004067 132 WVKTSSK--KKIIMVP-LPDGIYFQDLSCSKP---------ELKLSSSSCSPVIDPHLSSD--GTMIAFVRD-CELHVLN 196 (776)
Q Consensus 132 ~sp~~~d--g~~l~~~-~~~~l~~~d~~~~~~---------~~~l~~~~~~~~~~~~~SpD--g~~la~~~~-~~l~~~~ 196 (776)
|+| . ++.|+.. .++.|.+||+.+++. ...+.... ..+..+.|+|+ ++.|+.... +.|.+|+
T Consensus 65 ~~~---~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 65 WAS---PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp ECC---GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred EcC---CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 998 5 7888765 678999999988742 21333333 34788999999 999888775 5799999
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCC---CCeEEEEEecCCCCCeEEEeecCCCCCCCCCccee
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD---SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDH 273 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (776)
+.+++..+....... . ....+........+..+.|+|+ ++.|+....+
T Consensus 141 ~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------------------------- 191 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSE---M-KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE------------------------- 191 (351)
T ss_dssp CSSTTCTTCCEEEEE---E-ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-------------------------
T ss_pred CCChHHhcccccccc---c-cccccccCCcccceeEEEeccCCCCCcEEEEecCC-------------------------
Confidence 988754211110000 0 0000011111223567899998 7777766532
Q ss_pred cCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCC----eEEEEEEeecCceEEEEEEECCCC
Q 004067 274 AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN----ILTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 274 ~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
..+.+++..+++...+..- ..+...+..++|+|+| +.++... .+..|.+||+.++
T Consensus 192 -----------~~~~~~~~~~~~~~~~~~~------~~h~~~i~~~~~~p~~~~~~~~l~s~~----~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 192 -----------QAIIYQRGKDGKLHVAAKL------PGHKSLIRSISWAPSIGRWYQLIATGC----KDGRIRIFKITEK 250 (351)
T ss_dssp -----------EEEEEEECTTSCEEEEEEC------CCCCSCEEEEEECCCSSCSSEEEEEEE----TTSCEEEEEEEEC
T ss_pred -----------CcEEEEccCCCceeeeeec------CCCCcceeEEEECCCCCCcceEEEEEc----CCCeEEEEeCCCC
Confidence 3345666666665443321 4566789999999998 6666655 3455889998776
Q ss_pred ceE
Q 004067 350 QRK 352 (776)
Q Consensus 350 ~~~ 352 (776)
...
T Consensus 251 ~~~ 253 (351)
T 3f3f_A 251 LSP 253 (351)
T ss_dssp C--
T ss_pred cCc
Confidence 543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-10 Score=119.33 Aligned_cols=274 Identities=8% Similarity=-0.021 Sum_probs=166.9
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
..+....| | |++.|+.. .++.|.+||+.+++....+.... ..+..+.|+||++.|+.... +.+.+|++.....
T Consensus 19 ~~v~~~~~-~---~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 19 QDVRDVVA-V---DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ-GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp SCEEEEEE-E---ETTEEEEEETTSEEEEEEESSSEEEEEEEECS-SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred CCcEEEEe-c---CCCEEEEEEcCCcEEEEECCCCEEEEEeecCC-ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence 46888899 8 89888876 67889999998887663343333 35888999999999998875 4688898876532
Q ss_pred eE-E-eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 203 RQ-L-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 203 ~~-l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
.+ + ...... ..+..+.| +++.|+....+
T Consensus 94 ~~~~~~~~~~~----------------~~i~~~~~--~~~~l~~~~~d-------------------------------- 123 (313)
T 3odt_A 94 EDPLYTLIGHQ----------------GNVCSLSF--QDGVVISGSWD-------------------------------- 123 (313)
T ss_dssp SCC-CEECCCS----------------SCEEEEEE--ETTEEEEEETT--------------------------------
T ss_pred CCcccchhhcc----------------cCEEEEEe--cCCEEEEEeCC--------------------------------
Confidence 11 1 111110 11345666 67777765532
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
..|.+|| .......+ ..+...+..+.|+| +++.++... .+..|.+||. +..........
T Consensus 124 ----~~i~~~d-~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~i~d~--~~~~~~~~~~~ 183 (313)
T 3odt_A 124 ----KTAKVWK-EGSLVYNL---------QAHNASVWDAKVVSFSENKFLTAS----ADKTIKLWQN--DKVIKTFSGIH 183 (313)
T ss_dssp ----SEEEEEE-TTEEEEEE---------ECCSSCEEEEEEEETTTTEEEEEE----TTSCEEEEET--TEEEEEECSSC
T ss_pred ----CCEEEEc-CCcEEEec---------ccCCCceeEEEEccCCCCEEEEEE----CCCCEEEEec--CceEEEEeccC
Confidence 3478888 22223333 34566788899998 888777665 3445888983 33322222111
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
..... .+.+.+++.+++...+| .|++|++..++ ...+..+...+..+. |+++|+ ++ .+..++
T Consensus 184 ~~~i~----------~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~~~~~-l~-~~~~dg-- 246 (313)
T 3odt_A 184 NDVVR----------HLAVVDDGHFISCSNDG--LIKLVDMHTGDVLRTYEGHESFVYCIK-LLPNGD-IV-SCGEDR-- 246 (313)
T ss_dssp SSCEE----------EEEEEETTEEEEEETTS--EEEEEETTTCCEEEEEECCSSCEEEEE-ECTTSC-EE-EEETTS--
T ss_pred cccEE----------EEEEcCCCeEEEccCCC--eEEEEECCchhhhhhhhcCCceEEEEE-EecCCC-EE-EEecCC--
Confidence 11100 01222233355566667 89999987655 445555555566654 999995 33 444443
Q ss_pred eeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 439 ESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 439 ~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
.+.+|.+. .+. ....+..+. .+..+.|+|||+ ++. .+.. ..|.+|+..+++.
T Consensus 247 ~v~iwd~~---~~~----~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~d---g~i~iw~~~~~~~ 299 (313)
T 3odt_A 247 TVRIWSKE---NGS----LKQVITLPAISIWSVDCMSNGD-IIV-GSSD---NLVRIFSQEKSRW 299 (313)
T ss_dssp EEEEECTT---TCC----EEEEEECSSSCEEEEEECTTSC-EEE-EETT---SCEEEEESCGGGC
T ss_pred EEEEEECC---CCc----eeEEEeccCceEEEEEEccCCC-EEE-EeCC---CcEEEEeCCCCce
Confidence 35666554 232 445555444 467889999998 333 3332 3699999877653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-10 Score=118.17 Aligned_cols=283 Identities=13% Similarity=0.117 Sum_probs=166.1
Q ss_pred CceEEEEeC------CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-----------CCcEEEEecCCC
Q 004067 138 KKKIIMVPL------PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-----------DCELHVLNLLIN 200 (776)
Q Consensus 138 dg~~l~~~~------~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-----------~~~l~~~~l~~g 200 (776)
||+++++.. .+.|+++|..+++....+..+.. .. +.+||||++++... .+.|.++|.+++
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~--P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~ 119 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL 119 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC--Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 999999873 45799999999887745544433 34 99999999876654 235999999998
Q ss_pred ceeE-EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 EQRQ-LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~~~~-lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+... +...... +...+.. ...+.+||||++|+.......
T Consensus 120 ~v~~~I~v~~g~-r~~~g~~----------P~~~a~spDGk~lyVan~~~~----------------------------- 159 (386)
T 3sjl_D 120 LPTADIELPDAP-RFLVGTY----------PWMTSLTPDGKTLLFYQFSPA----------------------------- 159 (386)
T ss_dssp CEEEEEEETTCC-CCCBSCC----------GGGEEECTTSSEEEEEECSSS-----------------------------
T ss_pred eEEEEEECCCcc-ccccCCC----------CceEEEcCCCCEEEEEEcCCC-----------------------------
Confidence 7643 3322200 0000101 336889999998876542111
Q ss_pred CCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEE------EEEeccCCeEEEEEEeecCceEEEEEEECCC-Cce
Q 004067 280 ASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLA------RVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQR 351 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~------~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~ 351 (776)
..|.++|+++++.. ++..+ ....+. -++.++||++++ +++++ +..
T Consensus 160 -----~~VsVID~~t~~vv~tI~v~--------g~~~~~P~g~~~~~~~~~DG~~~~--------------v~~~~~g~v 212 (386)
T 3sjl_D 160 -----PAVGVVDLEGKAFKRMLDVP--------DCYHIFPTAPDTFFMHCRDGSLAK--------------VAFGTEGTP 212 (386)
T ss_dssp -----CEEEEEETTTTEEEEEEECC--------SEEEEEEEETTEEEEEETTSCEEE--------------EECCSSSCC
T ss_pred -----CeEEEEECCCCcEEEEEECC--------CcceeecCCCceeEEECCCCCEEE--------------EECCCCCeE
Confidence 35789999998854 44332 111111 124455555433 33332 332
Q ss_pred EEEEEeccCcee-ecccccccCCCCccc--cCCeEEEEeccCCceEEEEEeCCCceeecccc----------CCeEEE--
Q 004067 352 KVILVEELDSWV-NLHDCFTPLDKGVTK--YSGGFIWASEKTGFRHLYLHDINGTCLGPITE----------GDWMVE-- 416 (776)
Q Consensus 352 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~----------~~~~~~-- 416 (776)
.. +. . .... ...+.|.. ..+ .+++++|.+. +| ++|.+|..++..+.+.. ..+...
T Consensus 213 ~~-~~-~-~~~~~~~~~~~~~----~~~~~~dG~~~~vs~-~g--~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 213 EI-TH-T-EVFHPEDEFLINH----PAYSQKAGRLVWPTY-TG--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 282 (386)
T ss_dssp EE-EE-C-CCCSCTTSCBCSC----CEEETTTTEEEEEBT-TS--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred EE-ee-c-ceecccccccccc----ceeEcCCCcEEEEeC-CC--EEEEEECCCCcceeecceeccccccccccccCCCc
Confidence 11 11 0 0000 00111110 011 2456778776 45 89999998765322211 122221
Q ss_pred EEEeecCCCcEEEEEEccCC-----CceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCE
Q 004067 417 QIVGVNEASGQVYFTGTLDG-----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPR 491 (776)
Q Consensus 417 ~~~~~s~dg~~i~~~~~~~~-----~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 491 (776)
....++++++++|+....++ ..-.++|.+|+.+ ++ .+.++.-+...+++.+|+|++.++|+.+... ..
T Consensus 283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~k----v~~~i~vg~~~~~lavs~D~~~~ly~tn~~~--~~ 355 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GE----RLAKFEMGHEIDSINVSQDEKPLLYALSTGD--KT 355 (386)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CC----EEEEEEEEEEECEEEECSSSSCEEEEEETTT--TE
T ss_pred ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-Ce----EEEEEECCCCcceEEECCCCCeEEEEEcCCC--Ce
Confidence 23457899999999864211 1125899999853 32 4566665555678999999986666655422 47
Q ss_pred EEEEEcCCCceeEeec
Q 004067 492 ILLCSLQDGSLVLPLY 507 (776)
Q Consensus 492 i~~~~~~~~~~~~~l~ 507 (776)
|.++|..+++.++.+-
T Consensus 356 VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 356 LYIHDAESGEELRSVN 371 (386)
T ss_dssp EEEEETTTCCEEEEEC
T ss_pred EEEEECCCCcEEEEec
Confidence 9999999998777664
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-10 Score=120.84 Aligned_cols=275 Identities=12% Similarity=0.060 Sum_probs=173.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|+||+ .|+..+. + ..|.+||+.+++....... +...+....|++ +
T Consensus 165 V~~l~~~~~~-~l~s~s~-d----g~i~vwd~~~~~~~~~~~~-----------------------h~~~v~~l~~~~-~ 214 (464)
T 3v7d_B 165 VWALKYAHGG-ILVSGST-D----RTVRVWDIKKGCCTHVFEG-----------------------HNSTVRCLDIVE-Y 214 (464)
T ss_dssp EEEEEECSTT-EEEEEET-T----SCEEEEETTTTEEEEEECC-----------------------CSSCEEEEEEEE-S
T ss_pred EEEEEEcCCC-EEEEEeC-C----CCEEEEECCCCcEEEEECC-----------------------CCCccEEEEEec-C
Confidence 5788999999 5554433 2 4699999999876554431 123677777873 1
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecC--------------------CCCCCCccCceeCCCCCEEEEEEC-CcEEE
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLS--------------------SSSCSPVIDPHLSSDGTMIAFVRD-CELHV 194 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~--------------------~~~~~~~~~~~~SpDg~~la~~~~-~~l~~ 194 (776)
++++.|+.. .++.|.+||+.++....... ...........++|+++.++.... +.|.+
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEE
Confidence 277877765 78899999998876431100 000111223466899999988874 57999
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
||+.+++.......... .+..+.|+|||+.|+..+.+
T Consensus 295 wd~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~l~sg~~d-------------------------- 331 (464)
T 3v7d_B 295 WDVAQMKCLYILSGHTD-----------------RIYSTIYDHERKRCISASMD-------------------------- 331 (464)
T ss_dssp EETTTTEEEEEECCCSS-----------------CEEEEEEETTTTEEEEEETT--------------------------
T ss_pred EECCCCcEEEEecCCCC-----------------CEEEEEEcCCCCEEEEEeCC--------------------------
Confidence 99998876544322211 14578899999998876643
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|++||+.+++....- ..+...+..+.|+ ++.++..+ .+..|.+||+.++.....
T Consensus 332 ----------g~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~--~~~l~s~s----~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 332 ----------TTIRIWDLENGELMYTL--------QGHTALVGLLRLS--DKFLVSAA----ADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp ----------SCEEEEETTTTEEEEEE--------CCCSSCEEEEEEC--SSEEEEEE----TTSEEEEEETTTCCEEEE
T ss_pred ----------CcEEEEECCCCcEEEEE--------eCCCCcEEEEEEc--CCEEEEEe----CCCcEEEEECCCCceeee
Confidence 24799999988754431 4566678888887 45666655 455699999998775544
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec--cccCCeEEEEEEeecCCCcEEEEEE
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP--ITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~--lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
..+...... ..|.+ ++.++++.. +| .|++|++.+++... +..+...+..+. |+ ++.+++..
T Consensus 388 ~~~~~~~~~---~~~~~--------~~~~l~~~~-dg--~i~iwd~~~g~~~~~~~~~~~~~v~~v~-~~--~~~l~~~~ 450 (464)
T 3v7d_B 388 YHHTNLSAI---TTFYV--------SDNILVSGS-EN--QFNIYNLRSGKLVHANILKDADQIWSVN-FK--GKTLVAAV 450 (464)
T ss_dssp EECTTCCCE---EEEEE--------CSSEEEEEE-TT--EEEEEETTTCCEEESCTTTTCSEEEEEE-EE--TTEEEEEE
T ss_pred ecCCCCccE---EEEEe--------CCCEEEEec-CC--eEEEEECCCCcEEehhhccCCCcEEEEE-ec--CCEEEEEE
Confidence 443322111 01222 233555444 55 89999988776543 444455555554 54 67777776
Q ss_pred ccCCCceeeEEEEEe
Q 004067 433 TLDGPLESHLYCAKL 447 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~ 447 (776)
..++. ..++.++.
T Consensus 451 ~~~g~--~~i~~ldf 463 (464)
T 3v7d_B 451 EKDGQ--SFLEILDF 463 (464)
T ss_dssp EETTE--EEEEEEEC
T ss_pred EeCCe--EEEEEeec
Confidence 66553 55666554
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-10 Score=117.30 Aligned_cols=242 Identities=9% Similarity=0.018 Sum_probs=149.1
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCc--cceecCCCCCCCccCceeCCC--CCEEEEEEC-CcEEEEecC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSK--PELKLSSSSCSPVIDPHLSSD--GTMIAFVRD-CELHVLNLL 198 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~~~~SpD--g~~la~~~~-~~l~~~~l~ 198 (776)
..+....|+| ||++|+.. .++.|.+||+.++. ....+..+.. .+..+.|+|+ |+.|+..+. +.|.+|++.
T Consensus 10 ~~V~~~~~s~---~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 10 EMIHDAVMDY---YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp SCEEEEEECT---TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred CceEEEEECC---CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 4688999999 99999976 68899999998643 2224554443 4788999874 888888774 579999999
Q ss_pred CCceeEEe-eCCCCCceecCCcccceecccCCcceEEECCC--CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 199 INEQRQLT-HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD--SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 199 ~g~~~~lt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
+++...+. ..... ..+..+.|+|| |+.|+..+.+
T Consensus 86 ~~~~~~~~~~~~h~----------------~~v~~v~~~p~~~g~~l~s~s~d--------------------------- 122 (297)
T 2pm7_B 86 NGRWSQIAVHAVHS----------------ASVNSVQWAPHEYGPMLLVASSD--------------------------- 122 (297)
T ss_dssp SSCBCCCEEECCCS----------------SCEEEEEECCGGGCSEEEEEETT---------------------------
T ss_pred CCceEEEEEeecCC----------------CceeEEEeCcCCCCcEEEEEECC---------------------------
Confidence 87533221 11110 11457899998 7888766543
Q ss_pred CCCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccC-------------CeEEEEEEeecCceEEE
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHG-------------NILTAQVLNRSQTKLKV 341 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpD-------------g~~l~~~~~~~~~~~~l 341 (776)
..|.+||+.++... .... ..+...+..++|+|+ ++.|+..+ .+..|
T Consensus 123 ---------~~v~~wd~~~~~~~~~~~~-------~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs----~D~~v 182 (297)
T 2pm7_B 123 ---------GKVSVVEFKENGTTSPIII-------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG----ADNLV 182 (297)
T ss_dssp ---------SEEEEEEBCSSSCBCCEEE-------ECCSSCEEEEEECCCC------------CCEEEEEE----TTSCE
T ss_pred ---------CcEEEEEecCCCceeeeee-------ecccCccceEeecCCcccccccCCCCCCcceEEEEc----CCCcE
Confidence 34788998765321 1111 345667889999997 35666554 34458
Q ss_pred EEEECCCCceE-----EEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce----eecc--cc
Q 004067 342 LKFDIKTGQRK-----VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC----LGPI--TE 410 (776)
Q Consensus 342 ~~~d~~~g~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~----~~~l--t~ 410 (776)
.+||+.++... .+..+...... -.|+|.. ..+.++++...++ .|.+|+++.+. ...+ ..
T Consensus 183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~---v~~sp~~-----~~~~~las~s~D~--~v~iWd~~~~~~~~~~~~~~~~~ 252 (297)
T 2pm7_B 183 KIWKYNSDAQTYVLESTLEGHSDWVRD---VAWSPTV-----LLRSYMASVSQDR--TCIIWTQDNEQGPWKKTLLKEEK 252 (297)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEE---EEECCCC-----SSSEEEEEEETTS--CEEEEEESSTTSCCEEEESSSSC
T ss_pred EEEEEcCCCceEEEEEEecCCCCceEE---EEECCCC-----CCceEEEEEECCC--cEEEEEeCCCCCccceeeeeccc
Confidence 88998776521 12222222111 1233311 0134566666677 67778766532 1223 22
Q ss_pred CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 411 GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 411 ~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
....+... .|+|+|+.|+..+. ++. +.||..+.
T Consensus 253 ~~~~v~~~-~~s~~g~~las~~~-D~~--v~lw~~~~ 285 (297)
T 2pm7_B 253 FPDVLWRA-SWSLSGNVLALSGG-DNK--VTLWKENL 285 (297)
T ss_dssp CSSCEEEE-EECSSSCCEEEEET-TSC--EEEEEECT
T ss_pred CCCcEEEE-EECCCCCEEEEEcC-CCc--EEEEEECC
Confidence 23345554 49999997655544 433 89998876
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=136.24 Aligned_cols=285 Identities=8% Similarity=-0.001 Sum_probs=159.4
Q ss_pred CCceeEcCC------CCEEEEEeCCCCcCcceEEEEecCCCceE--EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 004067 57 PTSIGFSPD------DNLITYLLSPDHSLSRKVFSFDPKTCKQE--LVFSPPDGGLDENNISPEEKLRRERLRERGLGVT 128 (776)
Q Consensus 57 ~~~~~~SpD------G~~ia~~~~~~~~~~~~l~~~~~~~~~~~--~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 128 (776)
+..++|||+ |+.||-.+.+ ..|.+||+.+++.. ....... ....+. .+...+.
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~D-----gtvrlWd~~~~~~~~~~~~~~~~---p~~~l~-----------~h~~~v~ 270 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQE-----GTINFLEIIDNATDVHVFKMCEK---PSLTLS-----------LADSLIT 270 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETT-----SCEEEEECCCCSSSSSEEECCCS---CSEEEC-----------CTTTCEE
T ss_pred EEEEEECCCCCCCCCCceEEEEecC-----CeEEEEEcCCCccccccceeecC---ceEEEE-----------cCCCCEE
Confidence 478899997 5788866552 36999999876421 0000000 000000 0123688
Q ss_pred eEEEeecCCCceEEEE-eCCCcEEEEeCCCCcc-ceecCCCCCCCccCc--eeCCCC-CEEEEEEC-CcEEEEecCCCce
Q 004067 129 RYEWVKTSSKKKIIMV-PLPDGIYFQDLSCSKP-ELKLSSSSCSPVIDP--HLSSDG-TMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~-~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~--~~SpDg-~~la~~~~-~~l~~~~l~~g~~ 202 (776)
.+.|+| ++. |+. ..++.|.+||+.+++. ...+..+.. .+..+ .|+||| +.||-.+. +.|.+||+.+++.
T Consensus 271 sv~~s~---~~~-lasgs~DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 271 TFDFLS---PTT-VVCGFKNGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEESS---SSE-EEEEETTSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEecC---CCe-EEEEeCCCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 999998 764 554 4889999999997643 212333333 46666 689998 77777764 5699999988764
Q ss_pred eE-EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 203 RQ-LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 203 ~~-lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.. +...... ..+..++||||++.++....+
T Consensus 346 ~~~~~~~~~~----------------~~v~~v~fsp~~~~l~s~~~d--------------------------------- 376 (524)
T 2j04_B 346 TKTTVSRFRG----------------SNLVPVVYCPQIYSYIYSDGA--------------------------------- 376 (524)
T ss_dssp HCEEEEECSC----------------CSCCCEEEETTTTEEEEECSS---------------------------------
T ss_pred cccccccccc----------------CcccceEeCCCcCeEEEeCCC---------------------------------
Confidence 32 2111100 003468899999987754432
Q ss_pred CCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec--
Q 004067 282 NVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-- 358 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-- 358 (776)
..+.+||+.++.. ..+ .++...+..++|||||+.|+..+ .+..|.+||+..+.........
T Consensus 377 ---~tv~lwd~~~~~~~~~l---------~gH~~~V~sva~Sp~g~~l~Sgs----~Dgtv~lwd~~~~~~~~~~~~~~~ 440 (524)
T 2j04_B 377 ---SSLRAVPSRAAFAVHPL---------VSRETTITAIGVSRLHPMVLAGS----ADGSLIITNAARRLLHGIKNSSAT 440 (524)
T ss_dssp ---SEEEEEETTCTTCCEEE---------EECSSCEEEEECCSSCCBCEEEE----TTTEEECCBSCSSTTTCC------
T ss_pred ---CcEEEEECcccccceee---------ecCCCceEEEEeCCCCCeEEEEE----CCCEEEEEechHhhccccccCccc
Confidence 2478999988764 334 45677899999999999777665 4556899998665332211100
Q ss_pred -c--CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCc--EEEEEEc
Q 004067 359 -L--DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASG--QVYFTGT 433 (776)
Q Consensus 359 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~--~i~~~~~ 433 (776)
. ..|.. .|+| +++.+ ....+ ..++.++..+.....+..+...|..+ .|+|++. .++..++
T Consensus 441 ~~~~~v~~v---~~sp--------~g~~~-~~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~V-afsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 441 QKSLRLWKW---DYSI--------KDDKY-RIDSS--YEVYPLTVNDVSKAKIDAHGINITCT-KWNETSAGGKCYAFSN 505 (524)
T ss_dssp CCCCEEEEC---BCCS--------SSCEE-EECCC--CCCCC-------------CCCSCCCE-EECCSTTTTTEEEEEC
T ss_pred eeeeEEEEe---ccCC--------CCCeE-EccCC--ceecccccCCcceeeecCCCceEEEE-ECCCCCCccHHHHhhc
Confidence 0 01111 1333 12222 22111 12333334455566676666666666 4999964 2455555
Q ss_pred cCCCceeeEEEEEe
Q 004067 434 LDGPLESHLYCAKL 447 (776)
Q Consensus 434 ~~~~~~~~l~~~~~ 447 (776)
.++. ++||.+.+
T Consensus 506 ~~g~--vrlw~l~~ 517 (524)
T 2j04_B 506 SAGL--LTLEYLSL 517 (524)
T ss_dssp TTSE--EEEEECSC
T ss_pred cCce--EEEEEccc
Confidence 5543 78887764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-10 Score=121.95 Aligned_cols=243 Identities=10% Similarity=0.065 Sum_probs=146.1
Q ss_pred CCeeeEEEeecCCCc-eEEEEe-CCCcEEEEeCCC----------CccceecCCCCCCCccCceeCCCCC-EEEEEE-CC
Q 004067 125 LGVTRYEWVKTSSKK-KIIMVP-LPDGIYFQDLSC----------SKPELKLSSSSCSPVIDPHLSSDGT-MIAFVR-DC 190 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg-~~l~~~-~~~~l~~~d~~~----------~~~~~~l~~~~~~~~~~~~~SpDg~-~la~~~-~~ 190 (776)
..+....|+| ++ +.|+.. .++.|++||+.. ......+..+.. .+..+.|+|+++ .|+... ++
T Consensus 129 ~~v~~l~~~p---~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 129 GEVNRARYMP---QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp SCCSEEEEET---TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEECTTSTTEEEEECTTS
T ss_pred CcEEEEEECC---CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeCCCCCCeEEEEeCCC
Confidence 4688899999 85 455544 578899999976 232223333333 478899999999 665554 35
Q ss_pred cEEEEecCCCce--eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 191 ELHVLNLLINEQ--RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 191 ~l~~~~l~~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
.|.+|++.++.. ..+.... ...+. ...+..+.|+|++..+++.....
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~----~~~~h--------~~~v~~v~~~p~~~~~l~s~~~d------------------- 253 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKN----IFTGH--------TAVVEDVAWHLLHESLFGSVADD------------------- 253 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSE----EECCC--------SSCEEEEEECSSCTTEEEEEETT-------------------
T ss_pred eEEEEeCCCCCCCCceeccce----eecCC--------CCCEeeeEEeCCCCCEEEEEeCC-------------------
Confidence 799999987422 1110000 00000 11255789999655454443221
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCc----eEEEEcccCCCCCCCCcceEEEEEeccCCeE-EEEEEeecCceEEEEE
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGP----VSWMDLQCGGTDQNYDEEYLARVNWMHGNIL-TAQVLNRSQTKLKVLK 343 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~l~~ 343 (776)
..|++||+.++. ...+ ..+...+..++|+|+++. ++... .+..|.+
T Consensus 254 ----------------g~i~i~d~~~~~~~~~~~~~---------~~~~~~v~~i~~~p~~~~~l~tg~----~dg~v~v 304 (430)
T 2xyi_A 254 ----------------QKLMIWDTRNNNTSKPSHTV---------DAHTAEVNCLSFNPYSEFILATGS----ADKTVAL 304 (430)
T ss_dssp ----------------SEEEEEETTCSCSSSCSEEE---------ECCSSCEEEEEECSSCTTEEEEEE----TTSEEEE
T ss_pred ----------------CeEEEEECCCCCCCcceeEe---------ecCCCCeEEEEeCCCCCCEEEEEe----CCCeEEE
Confidence 358999998763 2222 245567889999999984 44443 3456999
Q ss_pred EECCCC-c-eEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC---------------ceee
Q 004067 344 FDIKTG-Q-RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING---------------TCLG 406 (776)
Q Consensus 344 ~d~~~g-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g---------------~~~~ 406 (776)
||+.+. . ...+..+....+.. .|+| ++..+++++..+| .|.+|++.. ....
T Consensus 305 wd~~~~~~~~~~~~~h~~~v~~i---~~sp-------~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 372 (430)
T 2xyi_A 305 WDLRNLKLKLHSFESHKDEIFQV---QWSP-------HNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLF 372 (430)
T ss_dssp EETTCTTSCSEEEECCSSCEEEE---EECS-------SCTTEEEEEETTS--CCEEEEGGGTTCCCCHHHHHHCCTTEEE
T ss_pred EeCCCCCCCeEEeecCCCCEEEE---EECC-------CCCCEEEEEeCCC--cEEEEeCCCCccccCccccccCCcceEE
Confidence 999873 3 33443333332221 1333 2334666666677 788888764 2222
Q ss_pred ccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 407 PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 407 ~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
.+..+...+..+. |++++++++++...++ .+.+|+++
T Consensus 373 ~~~~h~~~v~~~~-~~p~~~~~l~s~s~dg--~i~iw~~~ 409 (430)
T 2xyi_A 373 IHGGHTAKISDFS-WNPNEPWIICSVSEDN--IMQVWQMA 409 (430)
T ss_dssp ECCCCSSCEEEEE-ECSSSTTEEEEEETTS--EEEEEEEC
T ss_pred EcCCCCCCceEEE-ECCCCCCEEEEEECCC--CEEEeEcc
Confidence 3333444566665 9999996666666654 37888886
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-10 Score=119.20 Aligned_cols=254 Identities=8% Similarity=0.004 Sum_probs=150.4
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-----cEEEEecCC
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-----ELHVLNLLI 199 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-----~l~~~~l~~ 199 (776)
....+.|+| ||+.++.. .++.|++||.++++.+ .+.......+..+.++|||+.++..... .|+++++++
T Consensus 46 ~~~~~~~~~---~g~l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 46 QLEGLNFDR---QGQLFLLDVFEGNIFKINPETKEIK-RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp CEEEEEECT---TSCEEEEETTTCEEEEECTTTCCEE-EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred cccCcEECC---CCCEEEEECCCCEEEEEeCCCCcEE-EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 456789999 99944443 5678999999998877 4432222347788999999866555443 699999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+..+.+...... + .....+.++|||+ |++.......
T Consensus 122 ~~~~~~~~~~~~-----~----------~~~~~i~~d~~g~-l~v~~~~~~~---------------------------- 157 (333)
T 2dg1_A 122 DNLQDIIEDLST-----A----------YCIDDMVFDSKGG-FYFTDFRGYS---------------------------- 157 (333)
T ss_dssp CSCEEEECSSSS-----C----------CCEEEEEECTTSC-EEEEECCCBT----------------------------
T ss_pred CEEEEEEccCcc-----C----------CcccceEECCCCC-EEEEeccccc----------------------------
Confidence 887644322110 0 0134678999996 4444321100
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-Cc-eEEEEEe
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQ-RKVILVE 357 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~-~~~l~~~ 357 (776)
......|+.++.++++...+.. .......++|+|||+.+++.... ...|++||+++ |. ...+...
T Consensus 158 -~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~i~~~~dg~~l~v~~~~---~~~i~~~d~~~~g~~~~~~~~~ 224 (333)
T 2dg1_A 158 -TNPLGGVYYVSPDFRTVTPIIQ---------NISVANGIALSTDEKVLWVTETT---ANRLHRIALEDDGVTIQPFGAT 224 (333)
T ss_dssp -TBCCEEEEEECTTSCCEEEEEE---------EESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSSSEEEEEEE
T ss_pred -cCCCceEEEEeCCCCEEEEeec---------CCCcccceEECCCCCEEEEEeCC---CCeEEEEEecCCCcCcccccce
Confidence 0012568899988877766522 12235678999999877665422 33689999853 33 3322111
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCceeeccccCCe------EEEEEEeecCCCcEEEE
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPITEGDW------MVEQIVGVNEASGQVYF 430 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~~~~lt~~~~------~~~~~~~~s~dg~~i~~ 430 (776)
.. ....... .+.++..++++-+|++. .++ .|++++++++....+..... .+..+ .|++||+.||+
T Consensus 225 ~~---~~~~~~~--~~~~i~~d~~G~l~v~~~~~~--~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~-~~~~dg~~L~v 296 (333)
T 2dg1_A 225 IP---YYFTGHE--GPDSCCIDSDDNLYVAMYGQG--RVLVFNKRGYPIGQILIPGRDEGHMLRSTHP-QFIPGTNQLII 296 (333)
T ss_dssp EE---EECCSSS--EEEEEEEBTTCCEEEEEETTT--EEEEECTTSCEEEEEECTTGGGTCSCBCCEE-EECTTSCEEEE
T ss_pred EE---EecCCCC--CCCceEECCCCCEEEEEcCCC--EEEEECCCCCEEEEEEcCCCccccccCcceE-EECCCCCEEEE
Confidence 00 0000000 01112334444444443 334 89999998776666654322 23444 48899988888
Q ss_pred EEccCC-CceeeEEEEEeC
Q 004067 431 TGTLDG-PLESHLYCAKLY 448 (776)
Q Consensus 431 ~~~~~~-~~~~~l~~~~~~ 448 (776)
.+.... +....||++++.
T Consensus 297 ~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 297 CSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEECGGGTCCEEEEEEECS
T ss_pred EeCccCCCCCceEEEEecc
Confidence 776421 233689999974
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-11 Score=123.19 Aligned_cols=254 Identities=11% Similarity=0.036 Sum_probs=145.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE---EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE---LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~---~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+..++|||||++||-.+. ...|.+||+.+++.. .+..|. ..+....|+
T Consensus 16 V~~v~~s~~g~~lasgs~-----D~~v~lwd~~~~~~~~~~~l~gH~------------------------~~V~~v~~~ 66 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSS-----DRSVKIFDVRNGGQILIADLRGHE------------------------GPVWQVAWA 66 (316)
T ss_dssp EEEEEECGGGCEEEEEET-----TTEEEEEEEETTEEEEEEEEECCS------------------------SCEEEEEEC
T ss_pred EEEeeEcCCCCEEEEEeC-----CCeEEEEEecCCCcEEEEEEcCCC------------------------ccEEEEEeC
Confidence 478999999999986554 247999999877532 333332 368899998
Q ss_pred ecCCC--ceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCC--CCEEEEEEC-CcEEEEecCCCceeEE
Q 004067 134 KTSSK--KKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSD--GTMIAFVRD-CELHVLNLLINEQRQL 205 (776)
Q Consensus 134 p~~~d--g~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpD--g~~la~~~~-~~l~~~~l~~g~~~~l 205 (776)
| + |+.|+.. .++.|.+||+.+++.. ..+..+. ..+..+.|+|| |..|+..+. +.|.+|++.++....+
T Consensus 67 ~---~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 67 H---PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD-SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp C---GGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS-SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred C---CCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC-CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 6 4 7777765 7899999999987533 1333333 34788999998 777776653 5799999887642211
Q ss_pred -eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 206 -THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 206 -t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
..... .. ..+..+.|+|++..-.+.....+... ....+-..|. ..
T Consensus 143 ~~~~~~-------h~--------~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~l~sgs--~D 188 (316)
T 3bg1_A 143 KKINNA-------HT--------IGCNAVSWAPAVVPGSLIDHPSGQKP-----------------NYIKRFASGG--CD 188 (316)
T ss_dssp CCBTTS-------SS--------SCBCCCEECCCCCC------CCSCCC-----------------CCCCBEECCB--TT
T ss_pred eeeecc-------cc--------CCcceEEEccccCCccccccccccCc-----------------cccceEEEec--CC
Confidence 11110 00 11446789998421000000000000 0000000000 01
Q ss_pred EEEEEEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCC----eEEEEEEeecCceEEEEEEECCCC---c--eEEE
Q 004067 285 VRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGN----ILTAQVLNRSQTKLKVLKFDIKTG---Q--RKVI 354 (776)
Q Consensus 285 ~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~l~~~d~~~g---~--~~~l 354 (776)
..|.+||+.++. ...+.. +..+...+..++|+||+ +.|+..+ .+..|.+|+++++ . .+.+
T Consensus 189 ~~v~lWd~~~~~~~~~~~~------l~~h~~~V~~v~~sp~~~~~~~~las~s----~D~~v~iw~~~~~~~~~~~~~~~ 258 (316)
T 3bg1_A 189 NLIKLWKEEEDGQWKEEQK------LEAHSDWVRDVAWAPSIGLPTSTIASCS----QDGRVFIWTCDDASSNTWSPKLL 258 (316)
T ss_dssp SBCCEEEECTTSCEEEEEC------CBCCSSCEEEEECCCCSSCSCCEEEEEE----TTCEEEEEECSSTTCCCCBCCEE
T ss_pred CeEEEEEeCCCCccceeee------cccCCCceEEEEecCCCCCCCceEEEEc----CCCeEEEEEccCccccchhhhhh
Confidence 346888887543 222222 24567789999999997 6676665 4567999998763 1 2334
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeC
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDI 400 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~ 400 (776)
..+....|.. .|+| ++.+++++..+| .|.+|+.
T Consensus 259 ~~~~~~v~~v---~~sp--------~g~~las~~~D~--~v~lw~~ 291 (316)
T 3bg1_A 259 HKFNDVVWHV---SWSI--------TANILAVSGGDN--KVTLWKE 291 (316)
T ss_dssp EECSSCEEEE---EECT--------TTCCEEEEESSS--CEEEEEE
T ss_pred hcCCCcEEEE---EEcC--------CCCEEEEEcCCC--eEEEEEE
Confidence 3333333322 2333 233556666677 5666664
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-11 Score=127.57 Aligned_cols=219 Identities=7% Similarity=-0.092 Sum_probs=129.1
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCC---Cccc-eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSC---SKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLL 198 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~---~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~ 198 (776)
..+....|+| .||+.|+.. .++.|.+||+.+ +... ..++......+..+.|+||++.|+..+. +.|.+|+++
T Consensus 64 ~~V~~~~~s~--~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 64 NSITSSAVSP--GETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp SCEEEEEEEC--SSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CceEEEEECC--CCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 4688899987 246777765 788999999877 4311 0122112334888999999999988875 578999884
Q ss_pred ---CCceeEEeeCCCCCceecCCcccceecccCCcc--eEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCccee
Q 004067 199 ---INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKT--GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDH 273 (776)
Q Consensus 199 ---~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~--~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (776)
+++.........- .... +.......... ...++||++.|+....+
T Consensus 142 ~~~~~~~~~~~~~~~i-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------------------------- 191 (437)
T 3gre_A 142 HYQQESEVKFLNCECI-RKIN----LKNFGKNEYAVRMRAFVNEEKSLLVALTNL------------------------- 191 (437)
T ss_dssp EEEETTEEEEEEEEEE-EEEE----GGGGSSCCCEEEEEEEECSSCEEEEEEETT-------------------------
T ss_pred cccCCceeecccccee-EEEE----ccCcccccCceEEEEEEcCCCCEEEEEeCC-------------------------
Confidence 4443332211100 0000 00000000111 23377888888776643
Q ss_pred cCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 274 AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 274 ~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
..|.+||+.+++....-.. ..+...+..++|+|||+.++..+ .+..|.+||+.+++...
T Consensus 192 -----------~~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~~----~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 192 -----------SRVIIFDIRTLERLQIIEN------SPRHGAVSSICIDEECCVLILGT----TRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp -----------SEEEEEETTTCCEEEEEEC------CGGGCCEEEEEECTTSCEEEEEE----TTSCEEEEETTTTEEEE
T ss_pred -----------CeEEEEeCCCCeeeEEEcc------CCCCCceEEEEECCCCCEEEEEc----CCCeEEEEEcCCccEEE
Confidence 3589999998876443211 12567899999999999887766 34569999999877644
Q ss_pred EEEeccCceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCce
Q 004067 354 ILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
.........+ ..-.+.| .+.+ +.++++...+| .|.+||+.+++
T Consensus 251 ~~~~~~~~~v-~~~~~~~-----~~s~~~~~l~s~~~dg--~i~iwd~~~~~ 294 (437)
T 3gre_A 251 SWSFGDHAPI-THVEVCQ-----FYGKNSVIVVGGSSKT--FLTIWNFVKGH 294 (437)
T ss_dssp EEBCTTCEEE-EEEEECT-----TTCTTEEEEEEESTTE--EEEEEETTTTE
T ss_pred EEecCCCCce-EEEEecc-----ccCCCccEEEEEcCCC--cEEEEEcCCCc
Confidence 3321111110 0001222 1222 33566666666 89999988665
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-13 Score=135.57 Aligned_cols=199 Identities=12% Similarity=0.000 Sum_probs=120.9
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHH-HHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE-WLI 630 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~-~l~ 630 (776)
...|.||++||.+++... ..|..++..|. .+|.|+++|+||+|.+... ...++++.+.+. .+.
T Consensus 65 ~~~~~lvllhG~~~~~~~-----~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~----------~~~~~~~a~~~~~~l~ 128 (300)
T 1kez_A 65 PGEVTVICCAGTAAISGP-----HEFTRLAGALR-GIAPVRAVPQPGYEEGEPL----------PSSMAAVAAVQADAVI 128 (300)
T ss_dssp SCSSEEEECCCSSTTCST-----TTTHHHHHHTS-SSCCBCCCCCTTSSTTCCB----------CSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcccCcH-----HHHHHHHHhcC-CCceEEEecCCCCCCCCCC----------CCCHHHHHHHHHHHHH
Confidence 355899999997664310 12334455554 4699999999999986431 123445544433 444
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEcCCCCCccc-c-c---ccccccccCCCC--CCc------
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDG-Y-D---TFYTEKYMGLPS--EDP------ 694 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~~~~~~~~~-~-~---~~~~~~~~~~~~--~~~------ 694 (776)
+.. +..++.|+||||||.+++.++.++| +.++++|+.++...... . . ......++..+. ...
T Consensus 129 ~~~--~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (300)
T 1kez_A 129 RTQ--GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTAL 206 (300)
T ss_dssp HHC--SSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHHHHHHHHGGGCCCCSSCCCHHHHHHH
T ss_pred Hhc--CCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHHHHHHHHHHHHhCcCCccchHHHHHH
Confidence 432 4468999999999999999999987 47899999887654221 0 0 000111111110 000
Q ss_pred cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHC-CCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 695 VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA-RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 695 ~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~-~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
..+...-......++++|+|+++|. |..+++.. .. +.+. ....+++++++ +|.....+....+.+.+.+||.
T Consensus 207 ~~~~~~~~~~~~~~i~~P~lii~G~-d~~~~~~~-~~----~~~~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~~fl~ 279 (300)
T 1kez_A 207 GAYDRLTGQWRPRETGLPTLLVSAG-EPMGPWPD-DS----WKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 279 (300)
T ss_dssp HHHHHHTTTCCCCCCSCCBEEEEES-SCSSCCCS-SC----CSCCCSSCCEEEEESS-CTTTSSSSCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCCCCCEEEEEeC-CCCCCCcc-cc----hhhhcCCCCeEEEecC-CChhhccccHHHHHHHHHHHHH
Confidence 0000000001236778999999995 66666543 22 2121 23578999999 9987433778899999999996
Q ss_pred Hh
Q 004067 774 RT 775 (776)
Q Consensus 774 ~~ 775 (776)
+.
T Consensus 280 ~~ 281 (300)
T 1kez_A 280 GG 281 (300)
T ss_dssp CC
T ss_pred hc
Confidence 53
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-11 Score=122.83 Aligned_cols=213 Identities=14% Similarity=0.094 Sum_probs=126.6
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECC--------CCCCCCchhh
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--------RGTARRGLKF 606 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--------rg~g~~~~~~ 606 (776)
..+.+.+|.|... ++.|+||.+||+. + ....||+++.+++ +|+.+.+. |
T Consensus 123 ~sf~~~i~lP~g~----~P~Pvii~~~~~~--------~----------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f 179 (433)
T 4g4g_A 123 ISFSASIRKPSGA----GPFPAIIGIGGAS--------I----------PIPSNVATITFNNDEFGAQMGSGSRGQGK-F 179 (433)
T ss_dssp EEEEEEEECCSSS----CCEEEEEEESCCC--------S----------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-H
T ss_pred EEEEEEEECCCCC----CCccEEEEECCCc--------c----------ccCCCeEEEEeCCcccccccCCCcCCccc-c
Confidence 3469999999763 6899999999731 1 1357999999986 22223333 3
Q ss_pred hhhh--hhccCCcc--HHHHHHHHHHHHH----cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC----
Q 004067 607 EASI--KHNCGRID--AEDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---- 674 (776)
Q Consensus 607 ~~~~--~~~~~~~~--~~D~~~~i~~l~~----~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~---- 674 (776)
.... ...++... ..++.+++++|.+ ++.||++||+++|||+||..|+++++..+ +|+++|+..+..+
T Consensus 180 ~~ly~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D~-Ri~~vi~~~sg~~G~~~ 258 (433)
T 4g4g_A 180 YDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALVD-RIALTIPQESGAGGAAC 258 (433)
T ss_dssp HHHHCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCTTTTSC
T ss_pred ccccCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcCC-ceEEEEEecCCCCchhh
Confidence 2211 12233222 3589999999999 88899999999999999999999999865 6899988765432
Q ss_pred ccccc--cccccc------ccC-CCCCCc--cchh------cCChhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHH
Q 004067 675 WDGYD--TFYTEK------YMG-LPSEDP--VGYE------YSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINAL 736 (776)
Q Consensus 675 ~~~~~--~~~~~~------~~~-~~~~~~--~~~~------~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l 736 (776)
++... ..+.+. ..+ ..|... ..|. ..+....++-+ ..|+|++.| .|..+++......+..+
T Consensus 259 ~R~~~~~~~~Ge~v~~~~~~~ge~~Wf~~~f~~y~~~~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~p~g~~~a~~aa 337 (433)
T 4g4g_A 259 WRISDQQKAAGANIQTAAQIITENPWFSRNFDPHVNSITSVPQDHHLLAALIVPRGLAVFEN-NIDWLGPVSTTGCMAAG 337 (433)
T ss_dssp HHHHHHHHHTTCCCCCHHHHTTTCCCSCTTTGGGTTCGGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTCHHHHHHHHHHH
T ss_pred hhhchhhcccCcchhhhhcccCCccccchhhHhhccccccCCcCHHHHHHhhCCceEEEecC-CCCcCCcHHHHHHHHHH
Confidence 22100 000000 000 111111 1111 01111222222 369999999 88888876444333322
Q ss_pred ----HHCC--CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 737 ----VAAR--KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 737 ----~~~~--~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+..| .++.+...++.+|+....+. ...+.+||+++|
T Consensus 338 ~~VY~~lGa~d~l~~~~~ggH~Hc~fp~~~----r~~~~~F~~k~L 379 (433)
T 4g4g_A 338 RLIYKAYGVPNNMGFSLVGGHNHCQFPSSQ----NQDLNSYINYFL 379 (433)
T ss_dssp HHHHHHHTCGGGEEEEECCSSCTTCCCGGG----HHHHHHHHHHHT
T ss_pred HHHHHHcCCccceEEEeeCCCCcccCCHHH----HHHHHHHHHHHh
Confidence 2234 35667665555665423333 366777887776
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=128.87 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=113.2
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
+.|.|+++||.+++.. .|..++..|.+ +|.|+++|+||+|.+... ...|+.+.++.+.+.
T Consensus 12 ~~~~lv~lhg~g~~~~-------~~~~~~~~L~~-~~~vi~~Dl~GhG~S~~~------------~~~~~~~~~~~~~~~ 71 (242)
T 2k2q_B 12 EKTQLICFPFAGGYSA-------SFRPLHAFLQG-ECEMLAAEPPGHGTNQTS------------AIEDLEELTDLYKQE 71 (242)
T ss_dssp CCCEEESSCCCCHHHH-------HHHHHHHHHCC-SCCCEEEECCSSCCSCCC------------TTTHHHHHHHHTTTT
T ss_pred CCceEEEECCCCCCHH-------HHHHHHHhCCC-CeEEEEEeCCCCCCCCCC------------CcCCHHHHHHHHHHH
Confidence 4467899999776543 34455666654 799999999999988531 134566666655543
Q ss_pred CCCC-CCcEEEEeechHHHHHHHHHhh------CCCceEEEEEcCCCCCccc---c-cccccccc---cCCCCCC-----
Q 004067 633 GLAK-VGHIGLYGWSYGGYLSAITLAR------FPDVFQCAVSGAPVTSWDG---Y-DTFYTEKY---MGLPSED----- 693 (776)
Q Consensus 633 ~~id-~~~i~l~G~S~GG~~a~~~a~~------~~~~~~~~v~~~~~~~~~~---~-~~~~~~~~---~~~~~~~----- 693 (776)
-.+. ..++.++||||||.+|+.+|.+ +|+.+-......|...... . ...+...+ ...+...
T Consensus 72 l~~~~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (242)
T 2k2q_B 72 LNLRPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKE 151 (242)
T ss_dssp CCCCCCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSEEEEEEECSCCCSCCCSSCTTHHHHHTTCCTTCCCCTTTHHHH
T ss_pred HHhhcCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEEEEECCCCCCCCcccccCCCHHHHHHHHHHhCCCChHHhcCHH
Confidence 2221 2589999999999999999986 5665321111112111000 0 00000000 0111100
Q ss_pred -----c----cch---hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH
Q 004067 694 -----P----VGY---EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 761 (776)
Q Consensus 694 -----~----~~~---~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 761 (776)
. ..+ ..... ..+.++++|+|+++|++|..++ .... .+.+.-....++++++ ||.+ ..+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~G~~D~~~~-~~~~----~~~~~~~~~~~~~~~~-gH~~-~~e~p 223 (242)
T 2k2q_B 152 VMSFFLPSFRSDYRALEQFEL-YDLAQIQSPVHVFNGLDDKKCI-RDAE----GWKKWAKDITFHQFDG-GHMF-LLSQT 223 (242)
T ss_dssp TTTTCCSCHHHHHHHHTCCCC-SCCTTCCCSEEEEEECSSCCHH-HHHH----HHHTTCCCSEEEEEEC-CCSH-HHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccc-CCCCccCCCEEEEeeCCCCcCH-HHHH----HHHHHhcCCeEEEEeC-Ccee-EcCCH
Confidence 0 000 00011 1145788999999999998754 2222 2333334456788875 9976 45667
Q ss_pred HHHHHHHHHHHHHh
Q 004067 762 IYMEERIWEFIERT 775 (776)
Q Consensus 762 ~~~~~~~~~fl~~~ 775 (776)
+++.+.+.+||++.
T Consensus 224 ~~~~~~i~~fl~~~ 237 (242)
T 2k2q_B 224 EEVAERIFAILNQH 237 (242)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcc
Confidence 88999999999753
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.8e-12 Score=121.48 Aligned_cols=198 Identities=14% Similarity=0.091 Sum_probs=120.0
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCC---cEEEEECCCCCCC--Cchhh----hhhh-----hhccC-----
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG---ILVWKLDNRGTAR--RGLKF----EASI-----KHNCG----- 615 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G---~~v~~~d~rg~g~--~~~~~----~~~~-----~~~~~----- 615 (776)
+.|||+||.+++.. .|..++..|++.| +.|+.+|.+++|. +...+ ..+. .....
T Consensus 5 ~pvv~iHG~~~~~~-------~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~ 77 (250)
T 3lp5_A 5 APVIMVPGSSASQN-------RFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANI 77 (250)
T ss_dssp CCEEEECCCGGGHH-------HHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHH
T ss_pred CCEEEECCCCCCHH-------HHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCH
Confidence 56788999776644 4556788888776 6777766655553 11100 0000 00000
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-----CCceEEEEEcCCCCCcccccccccccccCCC
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-----PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 690 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 690 (776)
....+++.++++.+.++. ...++.++||||||.+++.++.++ ++.++.+|.+++..+..... +
T Consensus 78 ~~~a~~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~----------~ 145 (250)
T 3lp5_A 78 DKQAVWLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTS----------T 145 (250)
T ss_dssp HHHHHHHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCC----------S
T ss_pred HHHHHHHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCccccc----------c
Confidence 012467778888887765 346899999999999999999876 56788888776543321100 0
Q ss_pred CCCccchhcC-ChhhhhccCCCcEEEEecC----CCCccChHHHHHHHHHHHHCCCCeEEEEec--CCCCCCCCCCcHHH
Q 004067 691 SEDPVGYEYS-SVMHHVHKMKGKLLLVHGM----IDENVHFRHTARLINALVAARKPYEILIFP--DERHMPRRHRDRIY 763 (776)
Q Consensus 691 ~~~~~~~~~~-~~~~~~~~i~~P~lii~G~----~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~--~~~H~~~~~~~~~~ 763 (776)
......|... .....+++ +.|+|+|+|. .|.+||...+..+...+.........+.+. +++|... .++ .+
T Consensus 146 ~~~~~~~~~l~~~~~~lp~-~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H~~l-~e~-~~ 222 (250)
T 3lp5_A 146 TAKTSMFKELYRYRTGLPE-SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKHFTEITVTGANTAHSDL-PQN-KQ 222 (250)
T ss_dssp SCCCHHHHHHHHTGGGSCT-TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSEEEEEECTTTTBSSCCH-HHH-HH
T ss_pred cccCHHHHHHHhccccCCC-CceEEEEEecCCCCCCceeeHHHHHHHHHHhcccccceEEEEEeCCCCchhcc-hhC-HH
Confidence 0011111100 00112222 5899999999 899999988877766664333344444554 4679773 333 37
Q ss_pred HHHHHHHHHHH
Q 004067 764 MEERIWEFIER 774 (776)
Q Consensus 764 ~~~~~~~fl~~ 774 (776)
+.+.+.+||.+
T Consensus 223 v~~~I~~FL~~ 233 (250)
T 3lp5_A 223 IVSLIRQYLLA 233 (250)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHhc
Confidence 88999999853
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=129.34 Aligned_cols=197 Identities=13% Similarity=0.066 Sum_probs=114.2
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|.|+++||++++.. .|..++. | ..+|.|+++|+||++.+... ...++++.+.+..++..
T Consensus 20 ~~~~lv~lhg~~~~~~-------~~~~~~~-l-~~~~~v~~~d~~G~~~~~~~----------~~~~~~~~~~~~~~i~~ 80 (265)
T 3ils_A 20 ARKTLFMLPDGGGSAF-------SYASLPR-L-KSDTAVVGLNCPYARDPENM----------NCTHGAMIESFCNEIRR 80 (265)
T ss_dssp SSEEEEEECCTTCCGG-------GGTTSCC-C-SSSEEEEEEECTTTTCGGGC----------CCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHH-------HHHHHHh-c-CCCCEEEEEECCCCCCCCCC----------CCCHHHHHHHHHHHHHH
Confidence 4578999999877654 2233355 5 67899999999997533211 12244444333322222
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHh---hCCCceEEEEEcCCCCCcc--ccc---cccccc---ccCCC-------CCCc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLA---RFPDVFQCAVSGAPVTSWD--GYD---TFYTEK---YMGLP-------SEDP 694 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~---~~~~~~~~~v~~~~~~~~~--~~~---~~~~~~---~~~~~-------~~~~ 694 (776)
.. ...++.++||||||.+|+.++. .+++.+.++++.++..... ... ..+.+. +.+.+ .+..
T Consensus 81 ~~-~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (265)
T 3ils_A 81 RQ-PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAMEQLPRAFYEHCNSIGLFATQPGASPDGSTEPP 159 (265)
T ss_dssp HC-SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCCCCCCHHHHHHHHHTTTTTTSSSSCSSSCSCCC
T ss_pred hC-CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcccccCHHHHHHHHHHHHhCCCccccccCCHHHH
Confidence 11 2358999999999999999998 6788888888876543211 000 000000 11100 0000
Q ss_pred cch-----------hcCChhhhhccCCCcEE-EEecCC---CCccC--------------hHHHHHHHHHHHHCCCCeEE
Q 004067 695 VGY-----------EYSSVMHHVHKMKGKLL-LVHGMI---DENVH--------------FRHTARLINALVAARKPYEI 745 (776)
Q Consensus 695 ~~~-----------~~~~~~~~~~~i~~P~l-ii~G~~---D~~v~--------------~~~~~~~~~~l~~~~~~~~~ 745 (776)
..+ ..+. .....++++|++ +++|++ |..++ ......+.+.+ .+.++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~ 236 (265)
T 3ils_A 160 SYLIPHFTAVVDVMLDYK-LAPLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIM--PGASFDI 236 (265)
T ss_dssp TTHHHHHHHHHHHTTTCC-CCCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHS--TTCCEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhC--CccceeE
Confidence 000 0001 111246788988 999999 98873 22223332222 1247899
Q ss_pred EEecCCCCCCC-CCCcHHHHHHHHHHHH
Q 004067 746 LIFPDERHMPR-RHRDRIYMEERIWEFI 772 (776)
Q Consensus 746 ~~~~~~~H~~~-~~~~~~~~~~~~~~fl 772 (776)
++++++||.+. ..+..+++.+.+.+||
T Consensus 237 ~~i~gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 237 VRADGANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp EEEEEEETTGGGSTTTTHHHHHHHHHHT
T ss_pred EEcCCCCcceeeChhhHHHHHHHHHHHh
Confidence 99999999763 1567777777777775
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-10 Score=123.35 Aligned_cols=295 Identities=13% Similarity=0.034 Sum_probs=168.4
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecC------------CCCCCCccCceeCC-CCCEEEEEE-C
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLS------------SSSCSPVIDPHLSS-DGTMIAFVR-D 189 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~------------~~~~~~~~~~~~Sp-Dg~~la~~~-~ 189 (776)
..+....|+| .||+.|+.. .++.|.+||+.+++....+. ......+..+.|+| +++.|+... +
T Consensus 44 ~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 44 GGINTLDIEP--VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp SCEEEEEECT--TTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred CcEEEEEEec--CCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 4788889986 257777765 68899999999887652222 11233478899999 677777776 4
Q ss_pred CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCC---CeEEEEEecCCCCCeEEEeecCCCCCC
Q 004067 190 CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDS---KFIAFTQVDSSEIPRFRIMHQGKSSVG 266 (776)
Q Consensus 190 ~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg---~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (776)
+.|.+|++.+++.......... ...+.|+|++ +.|+....+
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~------------------ 165 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFNFEET------------------VYSHHMSPVSTKHCLVAVGTRG------------------ 165 (408)
T ss_dssp SEEEEEETTTTEEEEEEECSSC------------------EEEEEECSSCSSCCEEEEEESS------------------
T ss_pred CeEEEeeCCCCccceeccCCCc------------------eeeeEeecCCCCCcEEEEEcCC------------------
Confidence 6799999999887665443321 3356787754 466655432
Q ss_pred CCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeE-EEEEEeecCceEEEEEEE
Q 004067 267 SEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL-TAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~l~~~d 345 (776)
..|.+||+.+++....- ..+...+..++|+|+++. ++... .+..|.+||
T Consensus 166 ------------------~~v~~~d~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~ll~~~~----~dg~i~i~d 215 (408)
T 4a11_B 166 ------------------PKVQLCDLKSGSCSHIL--------QGHRQEILAVSWSPRYDYILATAS----ADSRVKLWD 215 (408)
T ss_dssp ------------------SSEEEEESSSSCCCEEE--------CCCCSCEEEEEECSSCTTEEEEEE----TTSCEEEEE
T ss_pred ------------------CeEEEEeCCCcceeeee--------cCCCCcEEEEEECCCCCcEEEEEc----CCCcEEEEE
Confidence 23789999887644331 446678899999999984 55444 344599999
Q ss_pred CCCCce--EEEEEeccCceeecccccccC---CCCccccC-CeEEEEeccCCceEEEEEeCCCceeeccccC------Ce
Q 004067 346 IKTGQR--KVILVEELDSWVNLHDCFTPL---DKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITEG------DW 413 (776)
Q Consensus 346 ~~~g~~--~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~------~~ 413 (776)
+.++.. ..+..............+... -..+.+.+ +..+++...+| .|.+|++.+++....... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~ 293 (408)
T 4a11_B 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN--RMRLWNSSNGENTLVNYGKVCNNSKK 293 (408)
T ss_dssp TTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred CCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC--eEEEEECCCCccceeccccccccccc
Confidence 977652 221100000000000000000 00112322 33555565666 799999887654332211 01
Q ss_pred EEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 414 MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 414 ~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
...... ....+..+++.+.. + .+.+|.+. .+. .+..+..+. .+..+.|+|||+.|+..... ..|
T Consensus 294 ~~~~~~-~~~~~~~~~~~~~~-~--~i~v~d~~---~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i 358 (408)
T 4a11_B 294 GLKFTV-SCGCSSEFVFVPYG-S--TIAVYTVY---SGE----QITMLKGHYKTVDCCVFQSNFQELYSGSRD----CNI 358 (408)
T ss_dssp CCCCEE-CCSSSSCEEEEEET-T--EEEEEETT---TCC----EEEEECCCSSCEEEEEEETTTTEEEEEETT----SCE
T ss_pred cceeEE-ecCCCceEEEEecC-C--EEEEEECc---CCc----ceeeeccCCCeEEEEEEcCCCCEEEEECCC----CeE
Confidence 111111 22223334444433 2 25555543 333 455565444 46788999999988865433 359
Q ss_pred EEEEcCCCceeE
Q 004067 493 LLCSLQDGSLVL 504 (776)
Q Consensus 493 ~~~~~~~~~~~~ 504 (776)
.+|+..+++.+.
T Consensus 359 ~iw~~~~~~~~~ 370 (408)
T 4a11_B 359 LAWVPSLYEPVP 370 (408)
T ss_dssp EEEEECC-----
T ss_pred EEEeCCCCCccC
Confidence 999988776433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-10 Score=118.87 Aligned_cols=305 Identities=10% Similarity=-0.049 Sum_probs=160.5
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc----eecCCCCCCCccCceeCC--CCCEEEEEEC-CcEEEEe
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE----LKLSSSSCSPVIDPHLSS--DGTMIAFVRD-CELHVLN 196 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~----~~l~~~~~~~~~~~~~Sp--Dg~~la~~~~-~~l~~~~ 196 (776)
..+....|+| ||++|+.. .++.|.+||+.++... ..+.... ..+..+.|+| |++.|+..+. +.|.+|+
T Consensus 12 ~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 12 DLVHDVVYDF---YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-SSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp SCEEEEEECS---SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-SCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cceeEEEEcC---CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC-CcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 4788999999 99999877 6788999999876422 1333333 3488899999 6999888875 5799999
Q ss_pred cCCCce-------eEE-eeCCCCCceecCCcccceecccCCcceEEECCC--CCeEEEEEecCCCCCeEEEeecCCCCCC
Q 004067 197 LLINEQ-------RQL-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD--SKFIAFTQVDSSEIPRFRIMHQGKSSVG 266 (776)
Q Consensus 197 l~~g~~-------~~l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (776)
+.+++. +.+ +.... ...+..+.|+|+ ++.|+....+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~~~~~d------------------ 133 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDS----------------KGSLYSVKFAPAHLGLKLACLGND------------------ 133 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCC----------------SSCEEEEEECCGGGCSEEEEEETT------------------
T ss_pred cCCCcccccccCcceeeeeccc----------------CCceeEEEEcCCCCCcEEEEecCC------------------
Confidence 988742 111 11111 012457889999 9988876633
Q ss_pred CCCcceecCCCCCCCCCeEEEEEEEcCCCceEE-EEcccC---CC-CCCCCcceEEEEEeccC---CeEEEEEEeecCce
Q 004067 267 SEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCG---GT-DQNYDEEYLARVNWMHG---NILTAQVLNRSQTK 338 (776)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~---~~-~~~~~~~~~~~~~~SpD---g~~l~~~~~~~~~~ 338 (776)
..|.+||+.+++... +..... .. ....+...+..+.|+|+ ++.++... .+
T Consensus 134 ------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~ 191 (351)
T 3f3f_A 134 ------------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA----LE 191 (351)
T ss_dssp ------------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE----TT
T ss_pred ------------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec----CC
Confidence 357889987765311 110000 00 11245567889999998 77776665 34
Q ss_pred EEEEEEECCCCceEEEEEeccC-ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEE
Q 004067 339 LKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQ 417 (776)
Q Consensus 339 ~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~ 417 (776)
..+..++...+....+..-... ..+ ..-.|+|.+.. ...++++...+| .|.+|++..+..............
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~i-~~~~~~p~~~~----~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 264 (351)
T 3f3f_A 192 QAIIYQRGKDGKLHVAAKLPGHKSLI-RSISWAPSIGR----WYQLIATGCKDG--RIRIFKITEKLSPLASEESLTNSN 264 (351)
T ss_dssp EEEEEEECTTSCEEEEEECCCCCSCE-EEEEECCCSSC----SSEEEEEEETTS--CEEEEEEEECC-------------
T ss_pred CcEEEEccCCCceeeeeecCCCCcce-eEEEECCCCCC----cceEEEEEcCCC--eEEEEeCCCCcCccccCCccccee
Confidence 4566777777776544432211 110 01113331100 014677777777 788888765432222111111111
Q ss_pred EEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEE
Q 004067 418 IVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCS 496 (776)
Q Consensus 418 ~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~ 496 (776)
....++....+........ ......+. .......+..+..+. .+..+.|+|||+.|+..... ..|.+|+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~ 334 (351)
T 3f3f_A 265 MFDNSADVDMDAQGRSDSN--TEEKAELQ----SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD----GKVRLWK 334 (351)
T ss_dssp ----------------------------C----CSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETT----SCEEEEE
T ss_pred ccCCCcccccccccccccc--cceeeeec----ccccccEEEEEecccccEEEEEEcCCCCEEEEecCC----CcEEEEe
Confidence 1112222211111110000 01111110 000001233344333 47788999999977766533 3599999
Q ss_pred cCCCceeEee
Q 004067 497 LQDGSLVLPL 506 (776)
Q Consensus 497 ~~~~~~~~~l 506 (776)
..+++..+.+
T Consensus 335 ~~~~~~~~~~ 344 (351)
T 3f3f_A 335 ATYSNEFKCM 344 (351)
T ss_dssp ECTTSCEEEE
T ss_pred cCcCcchhhe
Confidence 8877654443
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-12 Score=129.55 Aligned_cols=142 Identities=15% Similarity=0.069 Sum_probs=95.2
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceE-EEEEcCCCCCcccccccccccccCC--CCC-Cccc---hhcCChhh
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQ-CAVSGAPVTSWDGYDTFYTEKYMGL--PSE-DPVG---YEYSSVMH 704 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~---~~~~~~~~ 704 (776)
+..+|++||+|+|+|+||++++.+++.+|++|+ +++++++.......... ....+.. +.. .... ....+++.
T Consensus 5 ~~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (318)
T 2d81_A 5 AFNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQY-YTSCMYNGYPSITTPTANMKSWSGNQIA 83 (318)
T ss_dssp CCCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSC-GGGGSTTCCCCCHHHHHHHHHHBTTTBC
T ss_pred hcCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchHH-HHHHhhccCCCCCCHHHHHHHhhcccCC
Confidence 345799999999999999999999999999998 87776654321110000 0000110 100 0000 00113334
Q ss_pred hhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCCC--CeEEEEecCCCCCCCCCCc------------------HHH
Q 004067 705 HVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMPRRHRD------------------RIY 763 (776)
Q Consensus 705 ~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~~~~~H~~~~~~~------------------~~~ 763 (776)
.+.+++ .|+|++||++|.+||+.+++++++.|++.+. +++++++++++|.+..... ...
T Consensus 84 ~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~~~~~d 163 (318)
T 2d81_A 84 SVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYD 163 (318)
T ss_dssp CGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSC
T ss_pred hhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCCCcccCCCCh
Confidence 444444 5999999999999999999999999988873 6899999999998632211 245
Q ss_pred HHHHHHHHHHH
Q 004067 764 MEERIWEFIER 774 (776)
Q Consensus 764 ~~~~~~~fl~~ 774 (776)
....+++||..
T Consensus 164 ~~~~i~~ff~g 174 (318)
T 2d81_A 164 GAGAALKWIYG 174 (318)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 66788888854
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-10 Score=117.12 Aligned_cols=112 Identities=14% Similarity=0.051 Sum_probs=74.0
Q ss_pred CCCCEEEEEeCCCC-cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEE
Q 004067 64 PDDNLITYLLSPDH-SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKII 142 (776)
Q Consensus 64 pDG~~ia~~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l 142 (776)
|||++++-...... .....|+++|.++++....... +.+- .+.+|| ||++|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~------------------------g~~p-~i~~sp---dg~~l 64 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT------------------------AFNG-HVQVSN---DGKKI 64 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC------------------------CEEE-EEEECT---TSSEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecC------------------------CCCC-ceEECC---CCCEE
Confidence 58887554433211 1235899999998876433321 1123 788999 99999
Q ss_pred EEeC-----------CCcEEEEeCCCCccceecCCCC-----CCCccCceeCCCCCEEEEEEC---CcEEEEecCCCcee
Q 004067 143 MVPL-----------PDGIYFQDLSCSKPELKLSSSS-----CSPVIDPHLSSDGTMIAFVRD---CELHVLNLLINEQR 203 (776)
Q Consensus 143 ~~~~-----------~~~l~~~d~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g~~~ 203 (776)
+... ++.|.+||+.+.+....+.... +.....+.+||||++|+.... +.|.++|+++++..
T Consensus 65 yv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 65 YTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV 144 (361)
T ss_dssp EEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred EEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE
Confidence 9873 3459999999877653333211 123567899999998776642 45999999988654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-10 Score=112.19 Aligned_cols=248 Identities=13% Similarity=0.113 Sum_probs=148.4
Q ss_pred eeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee
Q 004067 127 VTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR 203 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~ 203 (776)
...+.|+| ||+.|++. .++.|++||.+++ .+ .+.... .....+.++|||+.++.... +.|+++++++|+.+
T Consensus 30 ~eg~~~d~---~g~~l~~~~~~~~~i~~~~~~~~-~~-~~~~~~-~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 30 TEGPVYVP---ARSAVIFSDVRQNRTWAWSDDGQ-LS-PEMHPS-HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp EEEEEEEG---GGTEEEEEEGGGTEEEEEETTSC-EE-EEESSC-SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred ccCCeEeC---CCCEEEEEeCCCCEEEEEECCCC-eE-EEECCC-CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 45789999 99966665 5678999999998 54 444333 23677899999996544433 56999999889877
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.+...... . .......++++|||+ |++.....+.... ... + .......
T Consensus 104 ~~~~~~~~-~------------~~~~~~~i~~d~~G~-l~vtd~~~g~~~~----~~~-------------~-~~~~~~~ 151 (296)
T 3e5z_A 104 SIADSFEG-K------------KLNSPNDVCLAPDGS-LWFSDPTYGIDKP----EEG-------------Y-GGEMELP 151 (296)
T ss_dssp EEECEETT-E------------ECCCCCCEEECTTSC-EEEEECSHHHHCG----GGS-------------S-CCCCCSS
T ss_pred EEeeccCC-C------------CCCCCCCEEECCCCC-EEEECCccccccc----ccc-------------c-cccccCC
Confidence 66432111 0 011134788999997 4443210000000 000 0 0000001
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-CCce---EEEEEecc
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQR---KVILVEEL 359 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~g~~---~~l~~~~~ 359 (776)
...|+.++.+ ++...+. ........++|+|||+.+ +.. . ....|++|+++ +|.. ..+. ...
T Consensus 152 ~~~l~~~~~~-g~~~~~~---------~~~~~~~gi~~s~dg~~l-v~~-~--~~~~i~~~~~~~~g~~~~~~~~~-~~~ 216 (296)
T 3e5z_A 152 GRWVFRLAPD-GTLSAPI---------RDRVKPNGLAFLPSGNLL-VSD-T--GDNATHRYCLNARGETEYQGVHF-TVE 216 (296)
T ss_dssp SCEEEEECTT-SCEEEEE---------CCCSSEEEEEECTTSCEE-EEE-T--TTTEEEEEEECSSSCEEEEEEEE-CCS
T ss_pred CcEEEEECCC-CCEEEee---------cCCCCCccEEECCCCCEE-EEe-C--CCCeEEEEEECCCCcCcCCCeEe-eCC
Confidence 1467888877 6655542 223345679999999977 443 2 23468899986 5655 2232 111
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEee-cCCCcEEEEEEccCCCc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGV-NEASGQVYFTGTLDGPL 438 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~-s~dg~~i~~~~~~~~~~ 438 (776)
. ..+.++..++++-+|++. ++ .|++|+++|.....+..... +.... | ++|++.||+.+..
T Consensus 217 ~----------~~p~~i~~d~~G~l~v~~-~~--~v~~~~~~g~~~~~~~~~~~-~~~~~-f~~~d~~~L~v~t~~---- 277 (296)
T 3e5z_A 217 P----------GKTDGLRVDAGGLIWASA-GD--GVHVLTPDGDELGRVLTPQT-TSNLC-FGGPEGRTLYMTVST---- 277 (296)
T ss_dssp S----------SCCCSEEEBTTSCEEEEE-TT--EEEEECTTSCEEEEEECSSC-CCEEE-EESTTSCEEEEEETT----
T ss_pred C----------CCCCeEEECCCCCEEEEc-CC--eEEEECCCCCEEEEEECCCC-ceeEE-EECCCCCEEEEEcCC----
Confidence 1 111233445555455555 44 79999999877777766554 44444 6 6899988888652
Q ss_pred eeeEEEEEeC
Q 004067 439 ESHLYCAKLY 448 (776)
Q Consensus 439 ~~~l~~~~~~ 448 (776)
.||++++.
T Consensus 278 --~l~~~~~~ 285 (296)
T 3e5z_A 278 --EFWSIETN 285 (296)
T ss_dssp --EEEEEECS
T ss_pred --eEEEEEcc
Confidence 69999983
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-08 Score=106.73 Aligned_cols=289 Identities=11% Similarity=-0.021 Sum_probs=157.3
Q ss_pred eEcCCCCEEEEEeCCCCcCcc-eEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 61 GFSPDDNLITYLLSPDHSLSR-KVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~-~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
..+|||++ +|+.+..+.... .|+++|+++++....... +.+- .+.+|| ||
T Consensus 27 ~~~~~~~~-~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~------------------------g~~p-~i~~sp---Dg 77 (373)
T 2mad_H 27 APGADGRR-SYINLPAHHSAIIQQWVLDAGSGSILGHVNG------------------------GFLP-NPVAAH---SG 77 (373)
T ss_pred cCCCCCCE-EEEeCCcccCCccEEEEEECCCCeEEEEecC------------------------CCCC-CeEECC---CC
Confidence 34689976 566653111111 789999998876433211 1122 788999 99
Q ss_pred eEEEEeC-----------CCcEEEEeCCCCccceecCCC-C-----CCCccCceeCCCCCEEEEEEC---CcEEEEecCC
Q 004067 140 KIIMVPL-----------PDGIYFQDLSCSKPELKLSSS-S-----CSPVIDPHLSSDGTMIAFVRD---CELHVLNLLI 199 (776)
Q Consensus 140 ~~l~~~~-----------~~~l~~~d~~~~~~~~~l~~~-~-----~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~ 199 (776)
++|++.. ++.|.++|..+.+....+... . ......+.|||||++|++... +.|.++| ++
T Consensus 78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t 156 (373)
T 2mad_H 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG 156 (373)
T ss_pred CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence 9999984 356889999887665233221 0 112457899999999888753 4699999 98
Q ss_pred CceeEE-eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 200 NEQRQL-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 200 g~~~~l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
++.... ..-+. .+...|+++..++.....
T Consensus 157 ~~~~~~~i~~~~---------------------~~~~~~~~~~~~~~~~~d----------------------------- 186 (373)
T 2mad_H 157 GSSDDQLLSSPT---------------------CYHIHPGAPSTFYLLCAQ----------------------------- 186 (373)
T ss_pred CCEEeEEcCCCc---------------------eEEEEeCCCceEEEEcCC-----------------------------
Confidence 876543 32221 122456665544322111
Q ss_pred CCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 279 GASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..+.++|. +++.. .+... +...........+.+++++..+++.+. ...++.+|+.++..+.+..-
T Consensus 187 ------g~~~~vd~-~g~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 187 ------GGLAKTDH-AGGAAGAGLVG---AMLTAAQNLLTQPAQANKSGRIVWPVY----SGKILQADISAAGATNKAPI 252 (373)
T ss_pred ------CCEEEEEC-CCcEEEEEecc---ccccCCcceeecceeEecCCEEEEEcC----CceEEEEeccCCcceEeeee
Confidence 12345555 44433 11100 000011112334678888776666652 33699999987654433211
Q ss_pred ccCceeecccccccCCCC---ccccCCeEEEEecc-------CCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCc
Q 004067 358 ELDSWVNLHDCFTPLDKG---VTKYSGGFIWASEK-------TGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASG 426 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~-------~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~ 426 (776)
....-......|.|.+.. ++.+++.+|....+ .+...|+++|+.+++. +.|..+. ....+ .|++||+
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i-~~s~Dg~ 330 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAI-SVAQDGG 330 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeE-EECCCCC
Confidence 000000000112232211 23344455554432 1235899999988765 5665443 22344 4999999
Q ss_pred EEEEEEccCCCceeeEEEEEeC
Q 004067 427 QVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 427 ~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
.++|..+... ..|..+++.
T Consensus 331 ~~l~v~~~~~---~~V~ViD~~ 349 (373)
T 2mad_H 331 PDLYALSAGT---EVLHIYDAG 349 (373)
T ss_pred eEEEEEcCCC---CeEEEEECC
Confidence 6666665422 357777763
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.5e-11 Score=136.83 Aligned_cols=247 Identities=11% Similarity=0.047 Sum_probs=155.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+..+.+ ..|.+|++.++..+.+..... +...+....|+|
T Consensus 12 V~~l~~s~dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~---------------------h~~~V~~l~~s~-- 63 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTG---------------------HEGPVWRVDWAH-- 63 (753)
T ss_dssp EEEECCCSSSCCEEEEETT-----TEEEEEEEETTEEEEEEEECC---------------------CSSCEEEEEECC--
T ss_pred eEEEEECCCCCeEEEEECC-----CcEEEEecCCCCCccceeccC---------------------CcCceEEEEecC--
Confidence 4788999999999866542 469999998654433322111 124688999998
Q ss_pred CC--ceEEEEe-CCCcEEEEeCCCCcc--ceecCCCCCCCccCceeCCC--CCEEEEEEC-CcEEEEecCCCcee-EEee
Q 004067 137 SK--KKIIMVP-LPDGIYFQDLSCSKP--ELKLSSSSCSPVIDPHLSSD--GTMIAFVRD-CELHVLNLLINEQR-QLTH 207 (776)
Q Consensus 137 ~d--g~~l~~~-~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~~~~SpD--g~~la~~~~-~~l~~~~l~~g~~~-~lt~ 207 (776)
+ |+.|+.. .++.|++||+.+++. ...+.... ..+..+.|+|+ |+.++.... +.|.+|++.++... ....
T Consensus 64 -~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~ 141 (753)
T 3jro_A 64 -PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 141 (753)
T ss_dssp -TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred -CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC-CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe
Confidence 8 8888876 788999999999862 21333333 35888999999 999988876 57999999887322 1111
Q ss_pred CCCCCceecCCcccceecccCCcceEEECC-------------CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSL-------------DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-------------Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
.+.. ..+..+.|+| ||+.|+....+
T Consensus 142 ~~~~----------------~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d-------------------------- 179 (753)
T 3jro_A 142 DAHA----------------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------------------------- 179 (753)
T ss_dssp ECCS----------------SCEEEEEECCCC---------CGGGCCEEEEETT--------------------------
T ss_pred ecCC----------------CceEEEEecCcccccccccccCCCCCEEEEEECC--------------------------
Confidence 1110 1145788999 58877776643
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceE--EEEcccCCCCCCCCcceEEEEEeccC---CeEEEEEEeecCceEEEEEEECCCC
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVS--WMDLQCGGTDQNYDEEYLARVNWMHG---NILTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~SpD---g~~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
..|++||+.++... .+.. ...+...+..++|+|| |+.++... .+..|.+||+.++
T Consensus 180 ----------g~I~iwd~~~~~~~~~~~~~------~~~h~~~V~~l~~sp~~~~~~~l~s~s----~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 180 ----------NLVKIWKYNSDAQTYVLEST------LEGHSDWVRDVAWSPTVLLRSYLASVS----QDRTCIIWTQDNE 239 (753)
T ss_dssp ----------SCEEEEEEETTTTEEEEEEE------ECCCSSCEEEEEECCCCSSSEEEEEEE----SSSCEEEEEESSS
T ss_pred ----------CeEEEEeccCCcccceeeee------ecCCCCcEEEEEeccCCCCCCEEEEEe----cCCEEEEecCCCC
Confidence 23788888766421 1111 1456678999999999 88777665 3446899999876
Q ss_pred ceEEEEEeccCceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCc
Q 004067 350 QRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGT 403 (776)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~ 403 (776)
........... . . .......+.+++ +.++++...+| .|++|+.+.+
T Consensus 240 ~~~~~~~~~~~-~-~----~~~~v~~l~~spdg~~l~s~s~Dg--~I~vwd~~~~ 286 (753)
T 3jro_A 240 QGPWKKTLLKE-E-K----FPDVLWRASWSLSGNVLALSGGDN--KVTLWKENLE 286 (753)
T ss_dssp SSCCBCCBSSS-S-C----CSSCCCCEEECTTTCCEEEECSSS--CEECCBCCSS
T ss_pred CCcceeEEecc-C-C----CCCceEEEEEcCCCCEEEEEcCCC--EEEEEecCCC
Confidence 43211110000 0 0 000001112322 33566666677 7888887743
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-12 Score=136.45 Aligned_cols=163 Identities=12% Similarity=0.020 Sum_probs=108.8
Q ss_pred CceEEEEEcCCCCcccccccccccchh-hhHHHHh-CCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~-~~~~l~~-~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
..|+||++||..++.. ..| .. ++..|.+ .||.|+++|+||+|.+.......... ...+|+.+.++++.
T Consensus 69 ~~~~vvllHG~~~s~~--~~w----~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~~~~~~~~~----~~~~dl~~~i~~l~ 138 (432)
T 1gpl_A 69 NRKTRFIIHGFTDSGE--NSW----LSDMCKNMFQVEKVNCICVDWKGGSKAQYSQASQNIR----VVGAEVAYLVQVLS 138 (432)
T ss_dssp TSEEEEEECCTTCCTT--SHH----HHHHHHHHHHHCCEEEEEEECHHHHTSCHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCCC--chH----HHHHHHHHHhcCCcEEEEEECccccCccchhhHhhHH----HHHHHHHHHHHHHH
Confidence 4689999999776541 122 22 4556665 79999999999998775321111111 12567888888887
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK 710 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 710 (776)
++..++.+++.++||||||++|+.++.++|++++++++++|...+... .+. ....+ ....
T Consensus 139 ~~~g~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~p~~~~----------~~~-----~~~l~-----~~da 198 (432)
T 1gpl_A 139 TSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPYFQD----------TPE-----EVRLD-----PSDA 198 (432)
T ss_dssp HHHCCCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBCTTTTT----------CCT-----TTSCC-----GGGS
T ss_pred HhcCCCcccEEEEEeCHHHHHHHHHHHhcccccceeEEeccccccccC----------CCh-----hhccC-----cCCC
Confidence 654456789999999999999999999999989999988876432100 000 00001 1233
Q ss_pred CcEEEEecCCCCccCh---HHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 711 GKLLLVHGMIDENVHF---RHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~---~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
.++.+||+..|.++|. ... + .-.++..||++||..
T Consensus 199 ~~V~vIHt~~d~lVP~~~~g~~----~------~lg~~dfypngg~~q 236 (432)
T 1gpl_A 199 KFVDVIHTDISPILPSLGFGMS----Q------KVGHMDFFPNGGKDM 236 (432)
T ss_dssp SEEEEECSCCSCHHHHCCCBCS----S------CCSSEEEEEGGGSSC
T ss_pred ceEEEEEcCCcccccccccccc----c------cccceEEccCCCCCC
Confidence 5899999999998876 211 1 113466789999953
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-10 Score=116.12 Aligned_cols=202 Identities=10% Similarity=0.040 Sum_probs=132.3
Q ss_pred eeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 60 IGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
..+++|++.|+..+. ...|++||+.+++......... ..+.... .. -++-+. |+
T Consensus 42 ~~~~~d~~~l~sg~~-----Dg~v~iwd~~~~~~~~~~~~~~--v~~~~~~--------------~~--~~s~s~---D~ 95 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCE-----DGALHFTQLKDSKTITTITTPN--PRTGGEH--------------PA--IISRGP---CN 95 (343)
T ss_dssp SSSSEEEEEEEEEEE-----TTEEEEEEESSSSCEEEEEEEC--CCTTCCC--------------CS--EEEECS---TT
T ss_pred hhhcCCCCEEEEECC-----CCcEEEEECCCCcEEEEEecCC--ceeeeeC--------------Cc--eEEecC---CC
Confidence 346789998885544 3479999999887533221100 0000000 00 233445 77
Q ss_pred eEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCC--CCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCceec
Q 004067 140 KIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS--DGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 140 ~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp--Dg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
...++..++.+.++|+.+++....+.......+..+.|+| +|+.++..+. +.|.+||+.+++..++......
T Consensus 96 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----- 170 (343)
T 3lrv_A 96 RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD----- 170 (343)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-----
T ss_pred eEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-----
Confidence 7777777777777788787733233322233478899999 9999987774 5899999999987554422211
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 296 (776)
..+..++|+|||+.|+....+ ..|.+||+.+++
T Consensus 171 -----------~~i~~~~~~pdg~~lasg~~d------------------------------------g~i~iwd~~~~~ 203 (343)
T 3lrv_A 171 -----------VEYSSGVLHKDSLLLALYSPD------------------------------------GILDVYNLSSPD 203 (343)
T ss_dssp -----------CCCCEEEECTTSCEEEEECTT------------------------------------SCEEEEESSCTT
T ss_pred -----------CceEEEEECCCCCEEEEEcCC------------------------------------CEEEEEECCCCC
Confidence 014578999999988765533 347999999887
Q ss_pred eEEEEcccCCCCCCC-CcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 297 VSWMDLQCGGTDQNY-DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 297 ~~~l~~~~~~~~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
.....+ .. +...+..++|+|||+.|+..+ .. .|.+||+.++..
T Consensus 204 ~~~~~~-------~~~h~~~v~~l~fs~~g~~l~s~~----~~-~v~iwd~~~~~~ 247 (343)
T 3lrv_A 204 QASSRF-------PVDEEAKIKEVKFADNGYWMVVEC----DQ-TVVCFDLRKDVG 247 (343)
T ss_dssp SCCEEC-------CCCTTSCEEEEEECTTSSEEEEEE----SS-BEEEEETTSSTT
T ss_pred CCccEE-------eccCCCCEEEEEEeCCCCEEEEEe----CC-eEEEEEcCCCCc
Confidence 652222 23 677899999999999887776 12 699999988754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.6e-10 Score=112.33 Aligned_cols=234 Identities=10% Similarity=0.040 Sum_probs=143.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.+|.|+|||+.|+|+.... ..|++++++++ .+.+... ...+..+.++|
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~----~~i~~~~~~~~-~~~~~~~------------------------~~~~~~l~~~~-- 78 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQ----NRTWAWSDDGQ-LSPEMHP------------------------SHHQNGHCLNK-- 78 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGG----TEEEEEETTSC-EEEEESS------------------------CSSEEEEEECT--
T ss_pred ccCCeEeCCCCEEEEEeCCC----CEEEEEECCCC-eEEEECC------------------------CCCcceeeECC--
Confidence 47899999999888887644 46999999988 6555531 13467889999
Q ss_pred CCceEEEEeC-CCcEEEEeCCCCccceecCCC----CCCCccCceeCCCCCEEEEEE------------------CCcEE
Q 004067 137 SKKKIIMVPL-PDGIYFQDLSCSKPELKLSSS----SCSPVIDPHLSSDGTMIAFVR------------------DCELH 193 (776)
Q Consensus 137 ~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~----~~~~~~~~~~SpDg~~la~~~------------------~~~l~ 193 (776)
||+.++... ++.|+++|..+++.+ .+... .......+.++|||+.++... .+.||
T Consensus 79 -dg~l~v~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~ 156 (296)
T 3e5z_A 79 -QGHLIACSHGLRRLERQREPGGEWE-SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVF 156 (296)
T ss_dssp -TCCEEEEETTTTEEEEECSTTCCEE-EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEE
T ss_pred -CCcEEEEecCCCeEEEEcCCCCcEE-EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEE
Confidence 999766654 468999999877766 44221 111245689999998444211 23689
Q ss_pred EEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCccee
Q 004067 194 VLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDH 273 (776)
Q Consensus 194 ~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (776)
.++.+ |+.+.+..... ...+++|+|||+.| +.....
T Consensus 157 ~~~~~-g~~~~~~~~~~------------------~~~gi~~s~dg~~l-v~~~~~------------------------ 192 (296)
T 3e5z_A 157 RLAPD-GTLSAPIRDRV------------------KPNGLAFLPSGNLL-VSDTGD------------------------ 192 (296)
T ss_dssp EECTT-SCEEEEECCCS------------------SEEEEEECTTSCEE-EEETTT------------------------
T ss_pred EECCC-CCEEEeecCCC------------------CCccEEECCCCCEE-EEeCCC------------------------
Confidence 98887 66655533211 13478899999988 543211
Q ss_pred cCCCCCCCCCeEEEEEEEcC-CCce---EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC
Q 004067 274 AYPFAGASNVKVRLGVVSAA-GGPV---SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 274 ~~~~~g~~~~~~~l~~~d~~-~~~~---~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
..|++|+++ +|+. ..+- . ........+++++||++++ .. ...|++||+++.
T Consensus 193 -----------~~i~~~~~~~~g~~~~~~~~~-~-------~~~~~p~~i~~d~~G~l~v-~~-----~~~v~~~~~~g~ 247 (296)
T 3e5z_A 193 -----------NATHRYCLNARGETEYQGVHF-T-------VEPGKTDGLRVDAGGLIWA-SA-----GDGVHVLTPDGD 247 (296)
T ss_dssp -----------TEEEEEEECSSSCEEEEEEEE-C-------CSSSCCCSEEEBTTSCEEE-EE-----TTEEEEECTTSC
T ss_pred -----------CeEEEEEECCCCcCcCCCeEe-e-------CCCCCCCeEEECCCCCEEE-Ec-----CCeEEEECCCCC
Confidence 247788876 4554 2221 1 0122334589999998433 32 235999999854
Q ss_pred ceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee
Q 004067 350 QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG 406 (776)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~ 406 (776)
....+...... ....|. ..+++.+|++..+ .||++++.++..+
T Consensus 248 ~~~~~~~~~~~----~~~~f~-------~~d~~~L~v~t~~---~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 248 ELGRVLTPQTT----SNLCFG-------GPEGRTLYMTVST---EFWSIETNVRGLE 290 (296)
T ss_dssp EEEEEECSSCC----CEEEEE-------STTSCEEEEEETT---EEEEEECSCCBCC
T ss_pred EEEEEECCCCc----eeEEEE-------CCCCCEEEEEcCC---eEEEEEccccccc
Confidence 44444322211 111121 0133455655544 6999998776543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-09 Score=110.73 Aligned_cols=208 Identities=13% Similarity=0.084 Sum_probs=129.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|+|||+ |++..... ..|+++|+++++.+.+.... ...+..+.|+|
T Consensus 47 ~~~~~~~~~g~-l~~~~~~~----~~i~~~d~~~~~~~~~~~~~-----------------------~~~~~~i~~~~-- 96 (333)
T 2dg1_A 47 LEGLNFDRQGQ-LFLLDVFE----GNIFKINPETKEIKRPFVSH-----------------------KANPAAIKIHK-- 96 (333)
T ss_dssp EEEEEECTTSC-EEEEETTT----CEEEEECTTTCCEEEEEECS-----------------------SSSEEEEEECT--
T ss_pred ccCcEECCCCC-EEEEECCC----CEEEEEeCCCCcEEEEeeCC-----------------------CCCcceEEECC--
Confidence 47899999998 65554433 46999999999887765211 13577889999
Q ss_pred CCceEEEEeCC-----CcEEEEeCCCCccceecCC-CCCCCccCceeCCCCCEEEEEEC-------CcEEEEecCCCcee
Q 004067 137 SKKKIIMVPLP-----DGIYFQDLSCSKPELKLSS-SSCSPVIDPHLSSDGTMIAFVRD-------CELHVLNLLINEQR 203 (776)
Q Consensus 137 ~dg~~l~~~~~-----~~l~~~d~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~la~~~~-------~~l~~~~l~~g~~~ 203 (776)
||+.++.... ..|+++|.++++.+..+.. .....+..+.++|||+.++-... ..||.++.++++.+
T Consensus 97 -dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (333)
T 2dg1_A 97 -DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT 175 (333)
T ss_dssp -TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred -CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE
Confidence 9986666544 4799999999877522221 12223567899999975443332 36999998887776
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.+..... ....++|+|||+.|++.....
T Consensus 176 ~~~~~~~------------------~~~~i~~~~dg~~l~v~~~~~---------------------------------- 203 (333)
T 2dg1_A 176 PIIQNIS------------------VANGIALSTDEKVLWVTETTA---------------------------------- 203 (333)
T ss_dssp EEEEEES------------------SEEEEEECTTSSEEEEEEGGG----------------------------------
T ss_pred EeecCCC------------------cccceEECCCCCEEEEEeCCC----------------------------------
Confidence 6643211 134688999999887654221
Q ss_pred eEEEEEEEcCC-C-ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 284 KVRLGVVSAAG-G-PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 284 ~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|++||+++ + ....+..... .. .........+.+++||++++... ....|++||+++...+.+
T Consensus 204 -~~i~~~d~~~~g~~~~~~~~~~~-~~-~~~~~~~~~i~~d~~G~l~v~~~----~~~~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 204 -NRLHRIALEDDGVTIQPFGATIP-YY-FTGHEGPDSCCIDSDDNLYVAMY----GQGRVLVFNKRGYPIGQI 269 (333)
T ss_dssp -TEEEEEEECTTSSSEEEEEEEEE-EE-CCSSSEEEEEEEBTTCCEEEEEE----TTTEEEEECTTSCEEEEE
T ss_pred -CeEEEEEecCCCcCcccccceEE-Ee-cCCCCCCCceEECCCCCEEEEEc----CCCEEEEECCCCCEEEEE
Confidence 2467788753 2 2222110000 00 11123567799999998443322 234689999865444444
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-09 Score=114.76 Aligned_cols=270 Identities=8% Similarity=0.005 Sum_probs=162.9
Q ss_pred cCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC--cEEEEecCCCc
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLINE 201 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~ 201 (776)
...+....|+| ||+.|+...+..+.+||+++++.. ...... .+....++++++.++++... .|.+||+.+++
T Consensus 19 ~~~V~~v~fs~---dg~~la~g~~~~~~iw~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 19 SNPVTDYEFNQ---DQSCLILSTLKSFEIYNVHPVAHI-MSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp CCCCCEEEECT---TSSEEEEECSSEEEEEEETTEEEE-EEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred CCceEEEEECC---CCCEEEEEcCCEEEEEecCCccee-eeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 35788999999 999999988888889999887665 222212 25668899999999887654 69999999887
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.......... +..+.|++++ ++... +
T Consensus 93 ~~~~~~~~~~------------------v~~v~~~~~~--~~~~~-~--------------------------------- 118 (355)
T 3vu4_A 93 DVSRIKVDAP------------------VKDLFLSREF--IVVSY-G--------------------------------- 118 (355)
T ss_dssp EEEEEECSSC------------------EEEEEECSSE--EEEEE-T---------------------------------
T ss_pred EEEEEECCCc------------------eEEEEEcCCE--EEEEE-c---------------------------------
Confidence 6443222211 4467788764 33222 1
Q ss_pred CCeEEEEEEEcCCC-ce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc---------
Q 004067 282 NVKVRLGVVSAAGG-PV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ--------- 350 (776)
Q Consensus 282 ~~~~~l~~~d~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~--------- 350 (776)
..+++||+.++ +. ..+. . .....++++ +.+++.+. ..+..|.+||+.++.
T Consensus 119 ---~~i~i~d~~~~~~~~~~~~----------~--~~~~~~~s~--~~la~~sg--~~~g~v~iwd~~~~~~~~~~~~~~ 179 (355)
T 3vu4_A 119 ---DVISVFKFGNPWKRITDDI----------R--FGGVCEFSN--GLLVYSNE--FNLGQIHITKLQSSGSATTQDQGV 179 (355)
T ss_dssp ---TEEEEEESSTTCCBSSCCE----------E--EEEEEEEET--TEEEEEES--SCTTCEEEEECCC-----------
T ss_pred ---CEEEEEECCCCceeeEEec----------c--CCceEEEEc--cEEEEeCC--CcCcEEEEEECCCCCccccccccc
Confidence 24789999876 32 1111 1 233456677 45555422 234569999998865
Q ss_pred --------eEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceE-EEEEeCCCce-eecccc--CCeEEEEE
Q 004067 351 --------RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRH-LYLHDINGTC-LGPITE--GDWMVEQI 418 (776)
Q Consensus 351 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~-l~~~~~~g~~-~~~lt~--~~~~~~~~ 418 (776)
.+.+..+....... .|+| ++.++++...+| . |.+||+.+++ ...+.. +...+..+
T Consensus 180 ~~~~~~p~~~~~~~h~~~v~~~---~~s~--------~g~~l~s~s~d~--~~v~iwd~~~~~~~~~~~~g~h~~~v~~~ 246 (355)
T 3vu4_A 180 QQKAILGKGVLIKAHTNPIKMV---RLNR--------KSDMVATCSQDG--TIIRVFKTEDGVLVREFRRGLDRADVVDM 246 (355)
T ss_dssp -------CCEEECCCSSCEEEE---EECT--------TSSEEEEEETTC--SEEEEEETTTCCEEEEEECTTCCSCEEEE
T ss_pred cccccCcccEEEEccCCceEEE---EECC--------CCCEEEEEeCCC--CEEEEEECCCCcEEEEEEcCCCCCcEEEE
Confidence 33343333332211 1333 334666666666 6 9999987654 455652 45556665
Q ss_pred EeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceee--------------------cCCC--CeEEEEEcCCc
Q 004067 419 VGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL--------------------TNGK--GKHVAVLDHNM 476 (776)
Q Consensus 419 ~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l--------------------~~~~--~~~~~~~spdg 476 (776)
. |+|||++|+..+. ++ .+++|.+.. .... ....+ .... ....++|++||
T Consensus 247 ~-~s~~~~~l~s~s~-d~--~v~iw~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~ 317 (355)
T 3vu4_A 247 K-WSTDGSKLAVVSD-KW--TLHVFEIFN--DQDN---KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES 317 (355)
T ss_dssp E-ECTTSCEEEEEET-TC--EEEEEESSC--CSCC---CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred E-ECCCCCEEEEEEC-CC--EEEEEEccC--CCCc---ccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence 4 9999997655544 33 378887753 1110 11111 1110 12457999999
Q ss_pred CEEEEEeeCCCCCCEEEEEEcC
Q 004067 477 RNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 477 ~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
+.|+..... +.+.+++..
T Consensus 318 ~~l~~~~~d----g~~~~~~~~ 335 (355)
T 3vu4_A 318 SLVVVWPHT----RMIETFKVV 335 (355)
T ss_dssp EEEEEETTT----TEEEEEEEE
T ss_pred CEEEEEeCC----CeEEEEEEE
Confidence 988887642 356666543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-09 Score=109.91 Aligned_cols=244 Identities=10% Similarity=0.006 Sum_probs=149.4
Q ss_pred eeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEE
Q 004067 128 TRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQL 205 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~l 205 (776)
..+.|+| |++.+++. ..+.|+++|.++++.+ .+... . .+..+.|+|||+.++. ....|+++++++|+.+.+
T Consensus 52 egp~~~~---~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~-~-~v~~i~~~~dg~l~v~-~~~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 52 EGPTFDP---ASGTAWWFNILERELHELHLASGRKT-VHALP-F-MGSALAKISDSKQLIA-SDDGLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEET---TTTEEEEEEGGGTEEEEEETTTTEEE-EEECS-S-CEEEEEEEETTEEEEE-ETTEEEEEETTTCCEEEE
T ss_pred cCCeEeC---CCCEEEEEECCCCEEEEEECCCCcEE-EEECC-C-cceEEEEeCCCeEEEE-ECCCEEEEECCCCcEEEE
Confidence 4678999 98888876 4678999999998776 44432 2 3677899999986665 466799999999988777
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
...... .. ..+...+.++|||+ |++....... .....
T Consensus 125 ~~~~~~------~~-------~~~~~~i~~d~~G~-l~v~~~~~~~-----------------------------~~~~~ 161 (326)
T 2ghs_A 125 AELESD------LP-------GNRSNDGRMHPSGA-LWIGTMGRKA-----------------------------ETGAG 161 (326)
T ss_dssp ECSSTT------CT-------TEEEEEEEECTTSC-EEEEEEETTC-----------------------------CTTCE
T ss_pred eeCCCC------CC-------CCCCCCEEECCCCC-EEEEeCCCcC-----------------------------CCCce
Confidence 543211 00 01134688999998 5544422110 00125
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC--CC-ce---EEEEEecc
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TG-QR---KVILVEEL 359 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~--~g-~~---~~l~~~~~ 359 (776)
.|+.++ +++...+.. .......++|||||+.+++... ....|+++|++ +| .. +.+..-..
T Consensus 162 ~l~~~~--~g~~~~~~~---------~~~~~~~i~~s~dg~~lyv~~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~ 227 (326)
T 2ghs_A 162 SIYHVA--KGKVTKLFA---------DISIPNSICFSPDGTTGYFVDT---KVNRLMRVPLDARTGLPTGKAEVFIDSTG 227 (326)
T ss_dssp EEEEEE--TTEEEEEEE---------EESSEEEEEECTTSCEEEEEET---TTCEEEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred EEEEEe--CCcEEEeeC---------CCcccCCeEEcCCCCEEEEEEC---CCCEEEEEEcccccCCcccCceEEEECCC
Confidence 688888 566555421 1123457899999997776542 23469999986 66 42 22222111
Q ss_pred CceeecccccccCCCCccccCCeEEEEecc-CCceEEEEEeCCCceeeccccCCeEEEEEEeec-CCCcEEEEEEccCC-
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVN-EASGQVYFTGTLDG- 436 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s-~dg~~i~~~~~~~~- 436 (776)
..+. | .++..+.++.+|++.. .+ .|+++++++.....+......+..+. |+ +|++.||+++...+
T Consensus 228 ~~~~-------p--~gi~~d~~G~lwva~~~~~--~v~~~d~~g~~~~~i~~~~~~~~~~a-f~g~d~~~L~vt~~~~~~ 295 (326)
T 2ghs_A 228 IKGG-------M--DGSVCDAEGHIWNARWGEG--AVDRYDTDGNHIARYEVPGKQTTCPA-FIGPDASRLLVTSAREHL 295 (326)
T ss_dssp SSSE-------E--EEEEECTTSCEEEEEETTT--EEEEECTTCCEEEEEECSCSBEEEEE-EESTTSCEEEEEEBCTTC
T ss_pred CCCC-------C--CeeEECCCCCEEEEEeCCC--EEEEECCCCCEEEEEECCCCCcEEEE-EecCCCCEEEEEecCCCC
Confidence 1111 1 1223344444555543 34 79999997766666665544455554 77 89898888876543
Q ss_pred --------CceeeEEEEEe
Q 004067 437 --------PLESHLYCAKL 447 (776)
Q Consensus 437 --------~~~~~l~~~~~ 447 (776)
|..-.||++++
T Consensus 296 ~~~~~~~~p~~g~~~~~~~ 314 (326)
T 2ghs_A 296 DDDAITANPQHGLTFELGI 314 (326)
T ss_dssp CHHHHHHCTTTTCEEECSS
T ss_pred ChhHhccCCCCceEEEEeC
Confidence 22235777765
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.7e-11 Score=119.93 Aligned_cols=209 Identities=13% Similarity=0.004 Sum_probs=122.5
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
.+...++.|.... ....+.||++||..++... .|.. .++..|.++||.|+++|+||+|.+...
T Consensus 15 ~l~~~i~~p~~~~--~~~~~~VvllHG~~~~~~~--~~~~---~l~~~L~~~G~~v~~~d~~g~g~~~~~---------- 77 (317)
T 1tca_A 15 VLDAGLTCQGASP--SSVSKPILLVPGTGTTGPQ--SFDS---NWIPLSTQLGYTPCWISPPPFMLNDTQ---------- 77 (317)
T ss_dssp HHHHTEEETTBCT--TSCSSEEEEECCTTCCHHH--HHTT---THHHHHHTTTCEEEEECCTTTTCSCHH----------
T ss_pred HHhheeeCCCCCC--CCCCCeEEEECCCCCCcch--hhHH---HHHHHHHhCCCEEEEECCCCCCCCcHH----------
Confidence 3455566665431 1234678999997665431 1220 457888999999999999998754321
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEcCCCCCcccccccccccccCCCCC
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE 692 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (776)
...+++.+.++.+.++. ..+++.++||||||.++.+++..++ +.++++|+++|............. + .. .
T Consensus 78 -~~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~~~~-~-~~--~ 150 (317)
T 1tca_A 78 -VNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDA-L-AV--S 150 (317)
T ss_dssp -HHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHH-T-TC--B
T ss_pred -HHHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhhhhh-h-hh--c
Confidence 01456777788877654 3468999999999999999888765 789999998876442211110000 0 00 0
Q ss_pred Cccc--hhcCCh-hhhhc-----cCCCcEEEEecCCCCccChHH--HHHHHHHHHHCCCCeEEEEe-------cCCCCCC
Q 004067 693 DPVG--YEYSSV-MHHVH-----KMKGKLLLVHGMIDENVHFRH--TARLINALVAARKPYEILIF-------PDERHMP 755 (776)
Q Consensus 693 ~~~~--~~~~~~-~~~~~-----~i~~P~lii~G~~D~~v~~~~--~~~~~~~l~~~~~~~~~~~~-------~~~~H~~ 755 (776)
.... ....+. +..+. ....|+++++|..|.++++.. .......+. + ...+.. ++.+|..
T Consensus 151 ~~~~~~~~~~s~f~~~L~~~~~~~~~vp~~~i~g~~D~iV~p~~~~g~~~~~~l~--~--a~~~~~~~~~~~~~~~gH~~ 226 (317)
T 1tca_A 151 APSVWQQTTGSALTTALRNAGGLTQIVPTTNLYSATDEIVQPQVSNSPLDSSYLF--N--GKNVQAQAVCGPLFVIDHAG 226 (317)
T ss_dssp CHHHHHTBTTCHHHHHHHHTTTTBCSSCEEEEECTTCSSSCCCCSSSTTSTTCCB--T--SEEEEHHHHHCTTCCCCTTH
T ss_pred CchHHhhCcCcHHHHHHHhcCCCCCCCCEEEEEeCCCCeECCccccccchhhhcc--C--CccEEeeeccCCCCccCccc
Confidence 0000 000000 01111 235799999999999998765 111111111 1 122222 4789964
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q 004067 756 RRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 756 ~~~~~~~~~~~~~~~fl~~ 774 (776)
...+ ...+..+.+||+.
T Consensus 227 -~l~~-p~~~~~v~~~L~~ 243 (317)
T 1tca_A 227 -SLTS-QFSYVVGRSALRS 243 (317)
T ss_dssp -HHHB-HHHHHHHHHHHHC
T ss_pred -ccCC-HHHHHHHHHHhcC
Confidence 2223 3456788888864
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-10 Score=117.86 Aligned_cols=245 Identities=9% Similarity=0.015 Sum_probs=149.0
Q ss_pred cCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCC--CCCEEEEEEC-CcEEEEec
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSS--DGTMIAFVRD-CELHVLNL 197 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~Sp--Dg~~la~~~~-~~l~~~~l 197 (776)
...+....|+| ||++|+.. .++.|.+||+.++... ..+..+.. .+..++|+| +|+.|+..+. +.|.+|++
T Consensus 13 ~~~V~~v~~s~---~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 13 EDMIHDAQMDY---YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-PVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -CCEEEEEECG---GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-CEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cCeEEEeeEcC---CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-cEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 35788999999 99999876 6788999999877532 13444433 478899986 4888887764 57999999
Q ss_pred CCCceeEE-eeCCCCCceecCCcccceecccCCcceEEECCC--CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 198 LINEQRQL-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD--SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 198 ~~g~~~~l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
.+++...+ +..+.. ..+..++|+|| |+.|+..+.+
T Consensus 89 ~~~~~~~~~~~~~h~----------------~~V~~v~~~p~~~g~~lasgs~D-------------------------- 126 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHD----------------SSVNSVCWAPHDYGLILACGSSD-------------------------- 126 (316)
T ss_dssp SSSCCCEEEEECCCS----------------SCCCEEEECCTTTCSCEEEECSS--------------------------
T ss_pred CCCcceEEEEccCCC----------------CceEEEEECCCCCCcEEEEEcCC--------------------------
Confidence 98753322 221110 11568899998 7777765533
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCC-----------------eEEEEEEeecC
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGN-----------------ILTAQVLNRSQ 336 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg-----------------~~l~~~~~~~~ 336 (776)
..|.+||+.++.... ... ...+...+..++|+|++ +.++..+
T Consensus 127 ----------~~i~lwd~~~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs---- 186 (316)
T 3bg1_A 127 ----------GAISLLTYTGEGQWEVKKI------NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG---- 186 (316)
T ss_dssp ----------SCEEEEEECSSSCEEECCB------TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB----
T ss_pred ----------CCEEEEecCCCCCcceeee------eccccCCcceEEEccccCCccccccccccCccccceEEEec----
Confidence 236888887663221 111 13445567778999983 4444332
Q ss_pred ceEEEEEEECCCCc-eEEEE---EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc---e--eec
Q 004067 337 TKLKVLKFDIKTGQ-RKVIL---VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT---C--LGP 407 (776)
Q Consensus 337 ~~~~l~~~d~~~g~-~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~---~--~~~ 407 (776)
.+..|.+||++++. .+.+. .+....+. -.|+|... .++.++++...+| .|.+|++++. . ...
T Consensus 187 ~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~---v~~sp~~~----~~~~~las~s~D~--~v~iw~~~~~~~~~~~~~~ 257 (316)
T 3bg1_A 187 CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD---VAWAPSIG----LPTSTIASCSQDG--RVFIWTCDDASSNTWSPKL 257 (316)
T ss_dssp TTSBCCEEEECTTSCEEEEECCBCCSSCEEE---EECCCCSS----CSCCEEEEEETTC--EEEEEECSSTTCCCCBCCE
T ss_pred CCCeEEEEEeCCCCccceeeecccCCCceEE---EEecCCCC----CCCceEEEEcCCC--eEEEEEccCccccchhhhh
Confidence 34568889987542 22222 22222111 12333210 0124666666777 8888987652 1 123
Q ss_pred cccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 408 ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 408 lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+..+...+..+ .|+|+|+.|+..+ .++. +.||..+.
T Consensus 258 ~~~~~~~v~~v-~~sp~g~~las~~-~D~~--v~lw~~~~ 293 (316)
T 3bg1_A 258 LHKFNDVVWHV-SWSITANILAVSG-GDNK--VTLWKESV 293 (316)
T ss_dssp EEECSSCEEEE-EECTTTCCEEEEE-SSSC--EEEEEECT
T ss_pred hhcCCCcEEEE-EEcCCCCEEEEEc-CCCe--EEEEEECC
Confidence 33334455555 4999999765554 4433 88998875
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=118.22 Aligned_cols=196 Identities=13% Similarity=0.150 Sum_probs=125.7
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCC----------Cc-eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT----------CK-QELVFSPPDGGLDENNISPEEKLRRERLRERG 124 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~----------~~-~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (776)
.+..++|+|++..+.+....+ ..|++|++.. .+ ...+..+ .
T Consensus 130 ~v~~l~~~p~~~~~lat~~~d----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h------------------------~ 181 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPS----SDVLVFDYTKHPSKPEPSGECQPDLRLRGH------------------------Q 181 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSS----SCEEEEEGGGSCSSCCTTCCCCCSEEEECC------------------------S
T ss_pred cEEEEEECCCCCcEEEEECCC----CcEEEEECCCcccccCccccCCCcEEecCC------------------------C
Confidence 368999999854444444433 3699999975 22 2233322 2
Q ss_pred CCeeeEEEeecCCCce-EEEEe-CCCcEEEEeCCCCcc-------ceecCCCCCCCccCceeCC-CCCEEEEEE-CCcEE
Q 004067 125 LGVTRYEWVKTSSKKK-IIMVP-LPDGIYFQDLSCSKP-------ELKLSSSSCSPVIDPHLSS-DGTMIAFVR-DCELH 193 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~-~l~~~-~~~~l~~~d~~~~~~-------~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~-~~~l~ 193 (776)
..+..+.|+| +++ .|+.. .++.|.+||+.++.. ...+.... ..+..+.|+| ++..++... ++.|+
T Consensus 182 ~~v~~l~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 182 KEGYGLSWNP---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT-AVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp SCCCCEEECT---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS-SCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred CCeEEEEeCC---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC-CCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 3578899999 998 66665 678999999987432 11232332 3478899999 555555554 46799
Q ss_pred EEecCCCc---eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 194 VLNLLINE---QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 194 ~~~l~~g~---~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
+|++.++. ......... ..+..+.|+|+++.++......
T Consensus 258 i~d~~~~~~~~~~~~~~~~~-----------------~~v~~i~~~p~~~~~l~tg~~d--------------------- 299 (430)
T 2xyi_A 258 IWDTRNNNTSKPSHTVDAHT-----------------AEVNCLSFNPYSEFILATGSAD--------------------- 299 (430)
T ss_dssp EEETTCSCSSSCSEEEECCS-----------------SCEEEEEECSSCTTEEEEEETT---------------------
T ss_pred EEECCCCCCCcceeEeecCC-----------------CCeEEEEeCCCCCCEEEEEeCC---------------------
Confidence 99998763 221111111 1155789999999755544321
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCc--eEEEEcccCCCCCCCCcceEEEEEeccCCeE-EEEEEeecCceEEEEEEECC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVNWMHGNIL-TAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~l~~~d~~ 347 (776)
..|.+||+.+.. ...+ ..+...+..+.|+|+|+. ++... .+..|.+||+.
T Consensus 300 --------------g~v~vwd~~~~~~~~~~~---------~~h~~~v~~i~~sp~~~~~l~s~~----~d~~i~iwd~~ 352 (430)
T 2xyi_A 300 --------------KTVALWDLRNLKLKLHSF---------ESHKDEIFQVQWSPHNETILASSG----TDRRLHVWDLS 352 (430)
T ss_dssp --------------SEEEEEETTCTTSCSEEE---------ECCSSCEEEEEECSSCTTEEEEEE----TTSCCEEEEGG
T ss_pred --------------CeEEEEeCCCCCCCeEEe---------ecCCCCEEEEEECCCCCCEEEEEe----CCCcEEEEeCC
Confidence 358999998743 3333 345678999999999974 44443 23458999987
Q ss_pred C
Q 004067 348 T 348 (776)
Q Consensus 348 ~ 348 (776)
.
T Consensus 353 ~ 353 (430)
T 2xyi_A 353 K 353 (430)
T ss_dssp G
T ss_pred C
Confidence 6
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.3e-09 Score=110.21 Aligned_cols=290 Identities=13% Similarity=0.129 Sum_probs=163.6
Q ss_pred CceEEEEeCC------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-----------CCcEEEEecCCC
Q 004067 138 KKKIIMVPLP------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-----------DCELHVLNLLIN 200 (776)
Q Consensus 138 dg~~l~~~~~------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-----------~~~l~~~~l~~g 200 (776)
|++++++... +.|.++|+.+.+....+..+.. . .+.+||||++|+... .+.|.++|..++
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~--P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL--P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS--C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC--C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 8888887733 5899999999988745544432 3 799999999876664 245999999998
Q ss_pred cee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 EQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+.. .+...+.. ....+ .....+.+||||++|+......
T Consensus 160 ~vv~~I~v~g~~-r~~~g----------~~P~~~~~spDGk~lyV~n~~~------------------------------ 198 (426)
T 3c75_H 160 LPIADIELPDAP-RFLVG----------TYQWMNALTPDNKNLLFYQFSP------------------------------ 198 (426)
T ss_dssp CEEEEEEETTCC-CCCBS----------CCGGGSEECTTSSEEEEEECSS------------------------------
T ss_pred cEEEEEECCCcc-ccccC----------CCcceEEEcCCCCEEEEEecCC------------------------------
Confidence 764 34332110 00000 0023678999999887654211
Q ss_pred CCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec
Q 004067 280 ASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 358 (776)
...|.++|+++++.. .+..+ .. ....|+|+..++..+. +..+..++..+++......
T Consensus 199 ----~~~VsVID~~t~kvv~~I~v~--------g~-----~~~~p~g~~~~v~~~~---dG~~~~V~~~~~~v~~~~~-- 256 (426)
T 3c75_H 199 ----APAVGVVDLEGKTFDRMLDVP--------DC-----YHIFPASPTVFYMNCR---DGSLARVDFADGETKVTNT-- 256 (426)
T ss_dssp ----SCEEEEEETTTTEEEEEEECC--------SE-----EEEEEEETTEEEEEET---TSSEEEEECCTTCCEEEEC--
T ss_pred ----CCeEEEEECCCCeEEEEEEcC--------Cc-----eeeccCCCcEEEEEcC---CCCEEEEECCCCcEEEEee--
Confidence 145889999998764 44331 11 1223333322222111 1123333444443322110
Q ss_pred cCceeec-ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecccc----------CCeEEE--EEEeecCCC
Q 004067 359 LDSWVNL-HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE----------GDWMVE--QIVGVNEAS 425 (776)
Q Consensus 359 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~----------~~~~~~--~~~~~s~dg 425 (776)
..+... .+.+.. ..+..++++++|.+. .| .++++|..++....+.. ..+... ....+++||
T Consensus 257 -~~~~v~~~p~~~~--~~~~~dg~~~~~~s~-~g--~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 257 -EVFHTEDELLINH--PAFSLRSGRLVWPTY-TG--KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp -CCCSCTTSCBCSC--CEECTTTCEEEEEBT-TS--EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred -eeeccCCCceeeE--eeecCCCCEEEEEeC-CC--cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 101000 000000 001334566777664 45 89999987664332211 011111 123589999
Q ss_pred cEEEEEEccCCC-----ceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 426 GQVYFTGTLDGP-----LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 426 ~~i~~~~~~~~~-----~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
+++|+....... ....++.+|+.+ .+ .+.++.-+.....+.|+|||+.++|+..... ..|.++|..++
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T-~k----vv~~I~vg~~P~gia~spDg~~~lyv~n~~s--~~VsVID~~t~ 403 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAET-GE----RINKIELGHEIDSINVSQDAEPLLYALSAGT--QTLHIYDAATG 403 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTT-CC----EEEEEEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEETTTC
T ss_pred CEEEEEecccccccccCCCCEEEEEECCC-Ce----EEEEEECCCCcCeEEEccCCCEEEEEEcCCC--CeEEEEECCCC
Confidence 999988542110 125799999842 22 4566655445678899999995666655322 47999999999
Q ss_pred ceeEee
Q 004067 501 SLVLPL 506 (776)
Q Consensus 501 ~~~~~l 506 (776)
+.++.+
T Consensus 404 kvv~tI 409 (426)
T 3c75_H 404 EELRSV 409 (426)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 877765
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-09 Score=108.28 Aligned_cols=306 Identities=12% Similarity=0.077 Sum_probs=168.7
Q ss_pred EcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceE
Q 004067 62 FSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKI 141 (776)
Q Consensus 62 ~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~ 141 (776)
..|||++++-...........|+++|.++++....... +.+.. +.+|| ||++
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v------------------------G~~P~-va~sp---DG~~ 91 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG------------------------GFLPN-PVVAD---DGSF 91 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE------------------------CSSCE-EEECT---TSSC
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC------------------------CCCCc-EEECC---CCCE
Confidence 48999988655442111135899999999886433321 12233 88999 9999
Q ss_pred EEEeC-----------CCcEEEEeCCCCccceecCCCC------CCCccCceeCCCCCEEEEEEC---CcEEEEecCCCc
Q 004067 142 IMVPL-----------PDGIYFQDLSCSKPELKLSSSS------CSPVIDPHLSSDGTMIAFVRD---CELHVLNLLINE 201 (776)
Q Consensus 142 l~~~~-----------~~~l~~~d~~~~~~~~~l~~~~------~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g~ 201 (776)
+++.. .+.|.++|..+.+....+.-.. +.....+.+||||+++..... +.|.++|+++++
T Consensus 92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence 98873 3569999999988763443221 113567899999998766642 469999999998
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
...-...+....... . +...-++.++||+.+++.....+.. .
T Consensus 172 vv~tI~v~g~~~~~P--------~--g~~~~~~~~~DG~~~~v~~~~~g~v-~--------------------------- 213 (386)
T 3sjl_D 172 FKRMLDVPDCYHIFP--------T--APDTFFMHCRDGSLAKVAFGTEGTP-E--------------------------- 213 (386)
T ss_dssp EEEEEECCSEEEEEE--------E--ETTEEEEEETTSCEEEEECCSSSCC-E---------------------------
T ss_pred EEEEEECCCcceeec--------C--CCceeEEECCCCCEEEEECCCCCeE-E---------------------------
Confidence 654333222100000 0 0011235778887544432211211 0
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec-cCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec--
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-- 358 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-- 358 (776)
+..+ ..+. ........++.|. +||+.+ |.+. ...++.+|+.++..+.+..-.
T Consensus 214 ---------~~~~---~~~~--------~~~~~~~~~~~~~~~dG~~~-~vs~----~g~V~v~d~~~~~~~v~~~~~~~ 268 (386)
T 3sjl_D 214 ---------ITHT---EVFH--------PEDEFLINHPAYSQKAGRLV-WPTY----TGKIHQIDLSSGDAKFLPAVEAL 268 (386)
T ss_dssp ---------EEEC---CCCS--------CTTSCBCSCCEEETTTTEEE-EEBT----TSEEEEEECTTSSCEECCCEESS
T ss_pred ---------Eeec---ceec--------cccccccccceeEcCCCcEE-EEeC----CCEEEEEECCCCcceeecceecc
Confidence 0000 0000 0011111124664 789644 4443 246999999877654432111
Q ss_pred -----cCceeecccccccCCCC---ccccCCeEEEEecc-------CCceEEEEEeCCCcee-eccccCCeEEEEEEeec
Q 004067 359 -----LDSWVNLHDCFTPLDKG---VTKYSGGFIWASEK-------TGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVN 422 (776)
Q Consensus 359 -----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~-------~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s 422 (776)
...|. |.+.. +..+++.+|..... +...+|+++|+.+++. +++.-+. ...++ .+|
T Consensus 269 ~~~~~~~g~~-------p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~l-avs 339 (386)
T 3sjl_D 269 TEAERADGWR-------PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSI-NVS 339 (386)
T ss_dssp CHHHHHTTEE-------ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEE-EEC
T ss_pred cccccccccc-------CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceE-EEC
Confidence 12333 22211 12233445444322 2346999999987763 4454332 33344 499
Q ss_pred CCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCC
Q 004067 423 EASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHN 475 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spd 475 (776)
+||+..+|.++..+ ..+..+++. .++ .+..+........+.+|+|
T Consensus 340 ~D~~~~ly~tn~~~---~~VsViD~~-t~k----~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 340 QDEKPLLYALSTGD---KTLYIHDAE-SGE----ELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp SSSSCEEEEEETTT---TEEEEEETT-TCC----EEEEECCCCSSCCEEEECC
T ss_pred CCCCeEEEEEcCCC---CeEEEEECC-CCc----EEEEecCCCCCceeEECCc
Confidence 99985555554432 356777764 343 5666666555567788887
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.20 E-value=8.8e-09 Score=104.82 Aligned_cols=239 Identities=13% Similarity=0.069 Sum_probs=143.3
Q ss_pred eeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEE
Q 004067 128 TRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQL 205 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~l 205 (776)
..+.|+| +++.|++. ..+.|+++|.++++.+ .+... ..+..+.++|||+ |+....+.|+++++++++.+.+
T Consensus 16 Egp~w~~---~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~--~~~~~i~~~~dG~-l~v~~~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 16 ESPVWEE---VSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD--APVSSVALRQSGG-YVATIGTKFCALNWKEQSAVVL 88 (297)
T ss_dssp EEEEEET---TTTEEEEEETTTTEEEEEETTTCCEE-EEECS--SCEEEEEEBTTSS-EEEEETTEEEEEETTTTEEEEE
T ss_pred cCCeEEC---CCCEEEEEECCCCEEEEEECCCCcEE-EEeCC--CceEEEEECCCCC-EEEEECCeEEEEECCCCcEEEE
Confidence 3688999 98888887 5678999999988775 44332 2467889999999 4445577899999999988777
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
........ ..+...++++|||+ |++......... ........
T Consensus 89 ~~~~~~~~-------------~~~~~di~~d~dG~-l~~~~~~~~~~~------------------------~~~~~~~~ 130 (297)
T 3g4e_A 89 ATVDNDKK-------------NNRFNDGKVDPAGR-YFAGTMAEETAP------------------------AVLERHQG 130 (297)
T ss_dssp EECCTTCS-------------SEEEEEEEECTTSC-EEEEEEECCSBT------------------------TBCCTTCE
T ss_pred EecCCCCC-------------CCCCCCEEECCCCC-EEEecCCccccc------------------------ccccCCCc
Confidence 54321100 01134678999998 555543211000 00001225
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC--CCCceE--EEEEeccCc
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI--KTGQRK--VILVEELDS 361 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~--~~g~~~--~l~~~~~~~ 361 (776)
.|+.++.++ +...+.. .......++|||||+.+++.... ...|+++|. ++|... .+.......
T Consensus 131 ~l~~~d~~g-~~~~~~~---------~~~~pngi~~spdg~~lyv~~~~---~~~i~~~~~d~~~G~~~~~~~~~~~~~~ 197 (297)
T 3g4e_A 131 ALYSLFPDH-HVKKYFD---------QVDISNGLDWSLDHKIFYYIDSL---SYSVDAFDYDLQTGQISNRRSVYKLEKE 197 (297)
T ss_dssp EEEEECTTS-CEEEEEE---------EESBEEEEEECTTSCEEEEEEGG---GTEEEEEEECTTTCCEEEEEEEEECCGG
T ss_pred EEEEEECCC-CEEEEee---------ccccccceEEcCCCCEEEEecCC---CCcEEEEeccCCCCcccCcEEEEECCCC
Confidence 678888764 4333311 12234579999999977666432 235777775 567642 222111000
Q ss_pred eeecccccccCCCCccccCCeEEEEecc-CCceEEEEEeCCCc-eeeccccCCeEEEEEEeec-CCCcEEEEEEccC
Q 004067 362 WVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVN-EASGQVYFTGTLD 435 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s-~dg~~i~~~~~~~ 435 (776)
- ..+.++..+.++-+|++.. ++ .|++++++++ ....+......+.... |+ +|++.||+++...
T Consensus 198 ~--------~~p~g~~~d~~G~lwva~~~~~--~v~~~d~~tG~~~~~i~~p~~~~t~~~-f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 198 E--------QIPDGMCIDAEGKLWVACYNGG--RVIRLDPVTGKRLQTVKLPVDKTTSCC-FGGKNYSEMYVTCARD 263 (297)
T ss_dssp G--------CEEEEEEEBTTSCEEEEEETTT--EEEEECTTTCCEEEEEECSSSBEEEEE-EESGGGCEEEEEEBCT
T ss_pred C--------CCCCeeEECCCCCEEEEEcCCC--EEEEEcCCCceEEEEEECCCCCceEEE-EeCCCCCEEEEEcCCc
Confidence 0 0111233444444555543 44 7999999854 4455554444455554 87 8999999998754
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-09 Score=108.98 Aligned_cols=253 Identities=13% Similarity=0.154 Sum_probs=146.8
Q ss_pred eeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee
Q 004067 127 VTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR 203 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~ 203 (776)
...+.|+| ||+.|++. .++.|++|+..+ +.. .+.... .....+.++|||+.++.... +.|++++.+ |+.+
T Consensus 47 ~egp~~~~---~g~~l~~~d~~~~~i~~~~~~g-~~~-~~~~~~-~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 47 SEGPAWWE---AQRTLVWSDLVGRRVLGWREDG-TVD-VLLDAT-AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp EEEEEEEG---GGTEEEEEETTTTEEEEEETTS-CEE-EEEESC-SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccCCeEeC---CCCEEEEEECCCCEEEEEeCCC-CEE-EEeCCC-CccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 45789999 99988877 567899999854 444 343322 23677899999995544433 469999987 6666
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.+...... .. ......++++|||+ |++....-+.... ..+. .......
T Consensus 120 ~~~~~~~~-~~------------~~~~~~i~~d~dG~-l~~td~~~g~~~~----~~~~--------------~~~~~~~ 167 (305)
T 3dr2_A 120 LLVGRYAG-KR------------LNSPNDLIVARDGA-IWFTDPPFGLRKP----SQGC--------------PADPELA 167 (305)
T ss_dssp EEECEETT-EE------------CSCCCCEEECTTSC-EEEECCSGGGSCG----GGSC--------------CCCCSSS
T ss_pred EEEeccCC-Cc------------cCCCCCEEECCCCC-EEEeCcCCCcccc----cccc--------------ccccccC
Confidence 65432111 00 11134688999997 5543100000000 0000 0000112
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeec--CceEEEEEEECCCCceEEEEEeccCc
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS--QTKLKVLKFDIKTGQRKVILVEELDS 361 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~l~~~d~~~g~~~~l~~~~~~~ 361 (776)
...|+.+|.++++...+. . ......++|||||+.|++..... .....|++++++++.. .....
T Consensus 168 ~~~v~~~d~~~g~~~~~~-~---------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l---~~~~~-- 232 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA-D---------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL---HDRRH-- 232 (305)
T ss_dssp CEEEEEECSSSCCCEEEE-E---------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE---EEEEE--
T ss_pred CCeEEEEcCCCCcEEEEe-c---------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc---cCCeE--
Confidence 357899999888877663 2 12345689999999777664321 0124699999876542 11110
Q ss_pred eeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 362 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
+... ... .+.++..+.++-+|++..+ .|++++++|.....+.... .+.+. .|+++++.||+++.. .
T Consensus 233 ~~~~-~~~--~pdgi~~d~~G~lwv~~~~---gv~~~~~~g~~~~~~~~~~-~~~~~-~f~~d~~~L~it~~~------~ 298 (305)
T 3dr2_A 233 FASV-PDG--LPDGFCVDRGGWLWSSSGT---GVCVFDSDGQLLGHIPTPG-TASNC-TFDQAQQRLFITGGP------C 298 (305)
T ss_dssp EECC-SSS--CCCSEEECTTSCEEECCSS---EEEEECTTSCEEEEEECSS-CCCEE-EECTTSCEEEEEETT------E
T ss_pred EEEC-CCC--CCCeEEECCCCCEEEecCC---cEEEECCCCCEEEEEECCC-ceeEE-EEeCCCCEEEEEcCC------e
Confidence 1000 001 1123344444556666633 5999999888777776554 23444 488999988888753 5
Q ss_pred EEEEEe
Q 004067 442 LYCAKL 447 (776)
Q Consensus 442 l~~~~~ 447 (776)
||++++
T Consensus 299 l~~~~~ 304 (305)
T 3dr2_A 299 LWMLPL 304 (305)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-08 Score=104.86 Aligned_cols=290 Identities=13% Similarity=0.112 Sum_probs=159.2
Q ss_pred CceEEEEe-------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----------CcEEEEecCC
Q 004067 138 KKKIIMVP-------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----------CELHVLNLLI 199 (776)
Q Consensus 138 dg~~l~~~-------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----------~~l~~~~l~~ 199 (776)
|++++++. .++.|++||.++++....+..+. . . .+.|||||++++.... +.|.++|+++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~-~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF-N-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE-E-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC-C-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 88887775 24689999999888763443332 2 3 7899999998877642 3499999998
Q ss_pred CceeE-EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 200 NEQRQ-LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 200 g~~~~-lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
++... +...+.. ...+ .....+++||||++|+......
T Consensus 91 ~~~~~~i~~~~~~--~~~g----------~~p~~i~~spdg~~l~v~n~~~----------------------------- 129 (361)
T 2oiz_A 91 LTFEKEISLPPKR--VQGL----------NYDGLFRQTTDGKFIVLQNASP----------------------------- 129 (361)
T ss_dssp CCEEEEEEECTTB--CCBC----------CCGGGEEECTTSSEEEEEEESS-----------------------------
T ss_pred CcEEEEEEcCccc--cccC----------CCcceEEECCCCCEEEEECCCC-----------------------------
Confidence 76543 3322110 0000 0134688999999887654321
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-CceEEEEEe
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVILVE 357 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~ 357 (776)
...|.+||+++++....-++ ... ...+.+.|+++..++....+ ..+..++.+. |+......
T Consensus 130 -----~~~v~v~d~~~~~~~~~~i~------~~~---~~~v~~~p~~~~~~~~~~~d---g~~~~v~~~~~g~~~~~~~- 191 (361)
T 2oiz_A 130 -----ATSIGIVDVAKGDYVEDVTA------AAG---CWSVIPQPNRPRSFMTICGD---GGLLTINLGEDGKVASQSR- 191 (361)
T ss_dssp -----SEEEEEEETTTTEEEEEEGG------GTT---EEEEEECTTSSSEEEEEETT---SSEEEEEECTTSSEEEEEE-
T ss_pred -----CCeEEEEECCCCcEEEEEec------CCC---cceeEEcCCCCeeEEEECCC---CcEEEEEECCCCcEeeecc-
Confidence 14688999998865432022 111 11234566653222222211 1233444432 44331111
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccc-----c-----CCeEEEE--EEeecCCC
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT-----E-----GDWMVEQ--IVGVNEAS 425 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt-----~-----~~~~~~~--~~~~s~dg 425 (776)
....|.... .|..-..+.+++.+++.+ .++ .++.+|+.++....+. . ..+.... ...+++|+
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~g~~~~~~~-~~~--~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg 265 (361)
T 2oiz_A 192 SKQMFSVKD---DPIFIAPALDKDKAHFVS-YYG--NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS 265 (361)
T ss_dssp CCCCSCTTT---SCBCSCCEECSSEEEEEB-TTS--EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT
T ss_pred ccceEcCCC---CceEEEecccCCEEEEEe-CCC--eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC
Confidence 001111000 011001123344566655 345 7999998765422111 0 0111111 23589999
Q ss_pred cEEEEEEccCC------CceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 426 GQVYFTGTLDG------PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 426 ~~i~~~~~~~~------~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
+++|+....++ .....++.+++.+ ++ .+..+..+. ...+.|||||++|+ +.+. ..|.++|..+
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~----~v~~i~~~~-p~~ia~spdg~~l~-v~n~----~~v~v~D~~t 334 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQ----RVARIPGRD-ALSMTIDQQRNLML-TLDG----GNVNVYDISQ 334 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTT-TE----EEEEEECTT-CCEEEEETTTTEEE-EECS----SCEEEEECSS
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCC-Cc----EEEEEecCC-eeEEEECCCCCEEE-EeCC----CeEEEEECCC
Confidence 99888754111 0124788888742 32 556676666 77899999999655 4432 5799999999
Q ss_pred C--ceeEee
Q 004067 500 G--SLVLPL 506 (776)
Q Consensus 500 ~--~~~~~l 506 (776)
+ +.+..+
T Consensus 335 ~~l~~~~~i 343 (361)
T 2oiz_A 335 PEPKLLRTI 343 (361)
T ss_dssp SSCEEEEEE
T ss_pred CcceeeEEe
Confidence 8 765554
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-10 Score=115.50 Aligned_cols=105 Identities=18% Similarity=0.103 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhC--CcEEEEECCCCCCCCchhhhhhhhhccCCccHH-HHHHHHHHHHH
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAE-DQLTGAEWLIK 631 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~-D~~~~i~~l~~ 631 (776)
+.||++||..++..-.. .|..++..|++. |+.|+++|+ |+|.+...... .. ..+. ++...++.+..
T Consensus 6 ~pvVllHG~~~~~~~~~----~~~~~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~~-~~-----~~~~~~~~~~~~~l~~ 74 (279)
T 1ei9_A 6 LPLVIWHGMGDSCCNPL----SMGAIKKMVEKKIPGIHVLSLEI-GKTLREDVENS-FF-----LNVNSQVTTVCQILAK 74 (279)
T ss_dssp CCEEEECCTTCCSCCTT----TTHHHHHHHHHHSTTCCEEECCC-SSSHHHHHHHH-HH-----SCHHHHHHHHHHHHHS
T ss_pred CcEEEECCCCCCCCCcc----cHHHHHHHHHHHCCCcEEEEEEe-CCCCccccccc-cc-----cCHHHHHHHHHHHHHh
Confidence 34889999765431001 345567778765 889999997 88865421111 00 1133 33334444433
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCc-eEEEEEcCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDV-FQCAVSGAP 671 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~-~~~~v~~~~ 671 (776)
.... .+++.++||||||.++..++.++|+. ++..|+.++
T Consensus 75 ~~~l-~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 75 DPKL-QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp CGGG-TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred hhhc-cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 2211 26899999999999999999999984 888887664
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-08 Score=104.91 Aligned_cols=199 Identities=10% Similarity=0.045 Sum_probs=127.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.+|.|+||++.++|+.... ..|+++++++++.+.+.. ...+..+.|+|
T Consensus 51 ~egp~~~~~~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~-------------------------~~~v~~i~~~~-- 99 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILE----RELHELHLASGRKTVHAL-------------------------PFMGSALAKIS-- 99 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGG----TEEEEEETTTTEEEEEEC-------------------------SSCEEEEEEEE--
T ss_pred CcCCeEeCCCCEEEEEECCC----CEEEEEECCCCcEEEEEC-------------------------CCcceEEEEeC--
Confidence 36899999999999986543 479999999988765542 13577888999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCCC----CCccCceeCCCCCEEEEEEC-------CcEEEEecCCCceeEE
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSC----SPVIDPHLSSDGTMIAFVRD-------CELHVLNLLINEQRQL 205 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~----~~~~~~~~SpDg~~la~~~~-------~~l~~~~l~~g~~~~l 205 (776)
||+.++.. ...|+++|.++++.+ .+..... .....+.++|||+.++-... ..||.++ +|+.+.+
T Consensus 100 -dg~l~v~~-~~gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 100 -DSKQLIAS-DDGLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp -TTEEEEEE-TTEEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred -CCeEEEEE-CCCEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 99977766 456999999988876 4433211 12456889999984433321 3688888 5766655
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
..... ...+++|+|||+.|++..... .
T Consensus 175 ~~~~~------------------~~~~i~~s~dg~~lyv~~~~~-----------------------------------~ 201 (326)
T 2ghs_A 175 FADIS------------------IPNSICFSPDGTTGYFVDTKV-----------------------------------N 201 (326)
T ss_dssp EEEES------------------SEEEEEECTTSCEEEEEETTT-----------------------------------C
T ss_pred eCCCc------------------ccCCeEEcCCCCEEEEEECCC-----------------------------------C
Confidence 43211 133688999999888764211 3
Q ss_pred EEEEEEcC--CC-ce---EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 286 RLGVVSAA--GG-PV---SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 286 ~l~~~d~~--~~-~~---~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
.|++++.+ +| +. ..+..- .........+.+++||.+++... ....|++||+++...+.+
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~------~~~~~~p~gi~~d~~G~lwva~~----~~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDS------TGIKGGMDGSVCDAEGHIWNARW----GEGAVDRYDTDGNHIARY 266 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEEC------TTSSSEEEEEEECTTSCEEEEEE----TTTEEEEECTTCCEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEEC------CCCCCCCCeeEECCCCCEEEEEe----CCCEEEEECCCCCEEEEE
Confidence 47778875 55 32 112110 12234556789999997433322 123599999854333333
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-09 Score=105.56 Aligned_cols=224 Identities=10% Similarity=-0.001 Sum_probs=122.4
Q ss_pred CeeeEEEeecCCC----ceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc
Q 004067 126 GVTRYEWVKTSSK----KKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~d----g~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~ 201 (776)
.+..+.+|| | ++.++... .++.+|++.+++.......+....+....+||||+.++-..
T Consensus 113 ~v~sla~sp---d~~~~~~~l~s~g-~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~------------- 175 (356)
T 2w18_A 113 EIRALFCSS---DDESEKQVLLKSG-NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF------------- 175 (356)
T ss_dssp EEEEECC---------CCEEEEEEE-EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-------------
T ss_pred ceEEEEECC---CccccccEEEeCC-CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec-------------
Confidence 356777777 8 77777643 33556666665543111111222356666777776554111
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECC---CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSL---DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp---Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
+ ..+. +..++||| |++.|+-.+.|
T Consensus 176 ---~-~~~~-------------------v~~l~fs~~~g~~~~LaSgS~D------------------------------ 202 (356)
T 2w18_A 176 ---L-MPPE-------------------ETILTFAEVQGMQEALLGTTIM------------------------------ 202 (356)
T ss_dssp ---E-CCCS-------------------SCEEEEEEEETSTTEEEEEETT------------------------------
T ss_pred ---c-CCCc-------------------eeeEEeeccCCCCceEEEecCC------------------------------
Confidence 1 1111 33567888 67888776644
Q ss_pred CCCCCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEe--------ecCceEEEEEEECCCC
Q 004067 279 GASNVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN--------RSQTKLKVLKFDIKTG 349 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~--------~~~~~~~l~~~d~~~g 349 (776)
..|.+||+++|+. +++... ......+..++|||||+.++..+. .+..+..|.+||+++|
T Consensus 203 ------~TIkIWDl~TGk~l~tL~g~------~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg 270 (356)
T 2w18_A 203 ------NNIVIWNLKTGQLLKKMHID------DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT 270 (356)
T ss_dssp ------SEEEEEETTTCCEEEEEECC------C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred ------CcEEEEECCCCcEEEEEcCC------CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence 4589999999875 444211 111234566789999997765432 2345778999999998
Q ss_pred ceEEEEEec--cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCc
Q 004067 350 QRKVILVEE--LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASG 426 (776)
Q Consensus 350 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~ 426 (776)
....+..-. +.. ...+... .. ++.++.+...++ .|.+||+.+++. ..|+.+...+...+.|||||+
T Consensus 271 k~l~v~~~~~p~Gh----~~~~lsg----~~-sg~~lASgS~Dg--TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~ 339 (356)
T 2w18_A 271 LSVGVMLYCLPPGQ----AGRFLEG----DV-KDHCAAAILTSG--TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS 339 (356)
T ss_dssp EEEEEEEECCCTTC----CCCEEEE----EE-ETTEEEEEETTS--CEEEEETTTCSEEEEECCC--CCCCEEEECSSSS
T ss_pred EEEEEEEeeccCCC----cceeEcc----cc-CCCEEEEEcCCC--cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC
Confidence 765433210 000 0000000 00 122444545566 899999988764 556555444444446999999
Q ss_pred EEEEEEccCCCceeeEEEE
Q 004067 427 QVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 427 ~i~~~~~~~~~~~~~l~~~ 445 (776)
+|+ ++..++. ++||++
T Consensus 340 ~La-SGS~D~T--IklWd~ 355 (356)
T 2w18_A 340 HLL-AGQKDGN--IFVYHY 355 (356)
T ss_dssp EEE-EECTTSC--EEEEEE
T ss_pred EEE-EEECCCc--EEEecC
Confidence 654 5555544 888875
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-10 Score=131.03 Aligned_cols=244 Identities=9% Similarity=-0.002 Sum_probs=153.6
Q ss_pred cCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCC--CCEEEEEEC-CcEEEEec
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSD--GTMIAFVRD-CELHVLNL 197 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpD--g~~la~~~~-~~l~~~~l 197 (776)
...+....|+| ||++|+.. .++.|.+||+.++... ..+..+. ..+..+.|+|+ |+.|+..+. +.|++|++
T Consensus 9 ~~~V~~l~~s~---dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 9 NELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-GPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp CCCEEEECCCS---SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS-SCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cceeEEEEECC---CCCeEEEEECCCcEEEEecCCCCCccceeccCCc-CceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 45788999999 99998877 6889999999854333 2344333 34888999998 998888875 57999999
Q ss_pred CCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCC--CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 198 LINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD--SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 198 ~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
.+++...+...... ...+..+.|+|+ |+.|+..+.+
T Consensus 85 ~~~~~~~~~~~~~h---------------~~~V~~v~~sp~~~~~~l~sgs~d--------------------------- 122 (753)
T 3jro_A 85 ENGRWSQIAVHAVH---------------SASVNSVQWAPHEYGPLLLVASSD--------------------------- 122 (753)
T ss_dssp ETTEEEEEEEECCC---------------SSCEEEEEECCGGGCSEEEEEETT---------------------------
T ss_pred CCCcccccccccCC---------------CCCeEEEEECCCCCCCEEEEEeCC---------------------------
Confidence 99864333221110 011457889999 8888877643
Q ss_pred CCCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEecc-------------CCeEEEEEEeecCceEEE
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMH-------------GNILTAQVLNRSQTKLKV 341 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~~~~~~~~l 341 (776)
..|.+||+.++... .... ..+...+..+.|+| ||+.++..+ .+..|
T Consensus 123 ---------g~I~vwdl~~~~~~~~~~~-------~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs----~dg~I 182 (753)
T 3jro_A 123 ---------GKVSVVEFKENGTTSPIII-------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG----ADNLV 182 (753)
T ss_dssp ---------SEEEEEECCSSSCCCCEEE-------ECCSSCEEEEEECCCC---------CGGGCCEEEEE----TTSCE
T ss_pred ---------CcEEEEEeecCCCcceeEe-------ecCCCceEEEEecCcccccccccccCCCCCEEEEEE----CCCeE
Confidence 35899999877322 1111 34566789999999 577777665 34458
Q ss_pred EEEECCCCceE--EEE---EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce------eecccc
Q 004067 342 LKFDIKTGQRK--VIL---VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC------LGPITE 410 (776)
Q Consensus 342 ~~~d~~~g~~~--~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~------~~~lt~ 410 (776)
.+||+.++... .+. .+...... -.|+|.. ..+.++++...+| .|++|++.++. ......
T Consensus 183 ~iwd~~~~~~~~~~~~~~~~h~~~V~~---l~~sp~~-----~~~~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~ 252 (753)
T 3jro_A 183 KIWKYNSDAQTYVLESTLEGHSDWVRD---VAWSPTV-----LLRSYLASVSQDR--TCIIWTQDNEQGPWKKTLLKEEK 252 (753)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEE---EEECCCC-----SSSEEEEEEESSS--CEEEEEESSSSSCCBCCBSSSSC
T ss_pred EEEeccCCcccceeeeeecCCCCcEEE---EEeccCC-----CCCCEEEEEecCC--EEEEecCCCCCCcceeEEeccCC
Confidence 99998776432 211 12222111 1133310 0045667777777 78888877653 111222
Q ss_pred CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 411 GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 411 ~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+...+..+ .|+|+|+.++..+ .++. +.+|.+..
T Consensus 253 ~~~~v~~l-~~spdg~~l~s~s-~Dg~--I~vwd~~~ 285 (753)
T 3jro_A 253 FPDVLWRA-SWSLSGNVLALSG-GDNK--VTLWKENL 285 (753)
T ss_dssp CSSCCCCE-EECTTTCCEEEEC-SSSC--EECCBCCS
T ss_pred CCCceEEE-EEcCCCCEEEEEc-CCCE--EEEEecCC
Confidence 33334444 4999999655544 4433 77877763
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-08 Score=101.16 Aligned_cols=202 Identities=15% Similarity=0.104 Sum_probs=128.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
...|.|+|+++.|+|..... ..|+++|+++++.+.+.. ...+..+.++|
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~-------------------------~~~~~~i~~~~-- 63 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPA----KKVCRWDSFTKQVQRVTM-------------------------DAPVSSVALRQ-- 63 (297)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEETTTCCEEEEEC-------------------------SSCEEEEEEBT--
T ss_pred ccCCeEECCCCEEEEEECCC----CEEEEEECCCCcEEEEeC-------------------------CCceEEEEECC--
Confidence 36899999999999987644 479999999987754432 13567889999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCC----CCCccCceeCCCCCEEEEEEC------------CcEEEEecCCC
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSS----CSPVIDPHLSSDGTMIAFVRD------------CELHVLNLLIN 200 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~la~~~~------------~~l~~~~l~~g 200 (776)
||+ |++..+..|+++|.++++.+ .+.... ........++|||+.++-... ..||.++.+ |
T Consensus 64 -dG~-l~v~~~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g 139 (297)
T 3g4e_A 64 -SGG-YVATIGTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-H 139 (297)
T ss_dssp -TSS-EEEEETTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-S
T ss_pred -CCC-EEEEECCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-C
Confidence 999 55555778999999988876 443221 112455789999984332221 248888775 4
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+...+..... ...+++|+|||+.|++.....
T Consensus 140 ~~~~~~~~~~------------------~pngi~~spdg~~lyv~~~~~------------------------------- 170 (297)
T 3g4e_A 140 HVKKYFDQVD------------------ISNGLDWSLDHKIFYYIDSLS------------------------------- 170 (297)
T ss_dssp CEEEEEEEES------------------BEEEEEECTTSCEEEEEEGGG-------------------------------
T ss_pred CEEEEeeccc------------------cccceEEcCCCCEEEEecCCC-------------------------------
Confidence 4443332211 134788999999887655321
Q ss_pred CCCeEEEEEEEc--CCCceEE--EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 281 SNVKVRLGVVSA--AGGPVSW--MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 281 ~~~~~~l~~~d~--~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
..|++++. ++|+... +-.. ..........+++++||++ +..... ...|++||+++|+.....
T Consensus 171 ----~~i~~~~~d~~~G~~~~~~~~~~-----~~~~~~~p~g~~~d~~G~l-wva~~~---~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 171 ----YSVDAFDYDLQTGQISNRRSVYK-----LEKEEQIPDGMCIDAEGKL-WVACYN---GGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp ----TEEEEEEECTTTCCEEEEEEEEE-----CCGGGCEEEEEEEBTTSCE-EEEEET---TTEEEEECTTTCCEEEEE
T ss_pred ----CcEEEEeccCCCCcccCcEEEEE-----CCCCCCCCCeeEECCCCCE-EEEEcC---CCEEEEEcCCCceEEEEE
Confidence 23566665 4555321 1110 0122345677899999973 333322 235999999988765443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-07 Score=102.78 Aligned_cols=295 Identities=13% Similarity=-0.012 Sum_probs=167.5
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecC--CCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPK--TCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~--~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
|..+..+.+||||++++... .+ ..|.++|+. +++. .++.. +.+...+
T Consensus 196 g~~p~~v~~SpDGr~lyv~~-~d----g~V~viD~~~~t~~~v~~i~~-------------------------G~~P~~i 245 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIG-RD----GKVNMIDLWMKEPTTVAEIKI-------------------------GSEARSI 245 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEE-TT----SEEEEEETTSSSCCEEEEEEC-------------------------CSEEEEE
T ss_pred CCCccceEECCCCCEEEEEc-CC----CeEEEEECCCCCCcEeEEEec-------------------------CCCCcee
Confidence 34456889999999877543 23 469999995 5543 22221 2244577
Q ss_pred EEe----ecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCC----------CCCccCceeCCCCCEEEEEEC--CcE
Q 004067 131 EWV----KTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSS----------CSPVIDPHLSSDGTMIAFVRD--CEL 192 (776)
Q Consensus 131 ~~s----p~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~----------~~~~~~~~~SpDg~~la~~~~--~~l 192 (776)
.+| | ||+++++. ..+.+.++|..+.+....+.... ..++..+..|+++..+++... +.|
T Consensus 246 a~s~~~~p---DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 246 ETSKMEGW---EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EECCSTTC---TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred EEccccCC---CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 899 8 99999987 56789999998887663332111 113445677888887666653 579
Q ss_pred EEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 193 HVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 193 ~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
+++|..+.....++.-+.. .+ .....|+|||++++......
T Consensus 323 ~~vd~~~~~~~~v~~i~~~--------~~--------~~d~~~~pdgr~~~va~~~s----------------------- 363 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAE--------RF--------LHDGGLDGSHRYFITAANAR----------------------- 363 (567)
T ss_dssp EEEETTCSSEEEEEEEECC--------SS--------EEEEEECTTSCEEEEEEGGG-----------------------
T ss_pred EEEecCCCccceeeeeecc--------cc--------ccCceECCCCCEEEEEeCCC-----------------------
Confidence 9999876543333321110 00 22567999999887665321
Q ss_pred ecCCCCCCCCCeEEEEEEEcCCCceEEE-EcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc-
Q 004067 273 HAYPFAGASNVKVRLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ- 350 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~- 350 (776)
..|.++|+++++.... ... +. ..+.+....+ +.||+..++.+.+.+ ...|.++|.+++.
T Consensus 364 ------------n~V~ViD~~t~kl~~~i~vg-g~---~Phpg~g~~~-~~p~~g~v~~t~~~g--~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 364 ------------NKLVVIDTKEGKLVAIEDTG-GQ---TPHPGRGANF-VHPTFGPVWATSHMG--DDSVALIGTDPEGH 424 (567)
T ss_dssp ------------TEEEEEETTTTEEEEEEECS-SS---SBCCTTCEEE-EETTTEEEEEEEBSS--SSEEEEEECCTTTC
T ss_pred ------------CeEEEEECCCCcEEEEEecc-Cc---CCCCccceee-ECCCCCcEEEeCCCC--CCeEEEecCCCCCC
Confidence 3578899999986543 220 10 1111111122 588877666555433 2348888887632
Q ss_pred ----eEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCC-----ceEEEEEeCCCc-----ee--eccc-----
Q 004067 351 ----RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG-----FRHLYLHDINGT-----CL--GPIT----- 409 (776)
Q Consensus 351 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g-----~~~l~~~~~~g~-----~~--~~lt----- 409 (776)
.+.+..-.... ..+.|-- .+. ++..+|++..-+ ...|.++|.++. .. ..+.
T Consensus 425 ~~~~~kvv~~i~~~g---~g~~~i~----~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~ 496 (567)
T 1qks_A 425 PDNAWKILDSFPALG---GGSLFIK----THP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 496 (567)
T ss_dssp TTTBTSEEEEEECSC---SCCCCEE----CCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred ccccCEEEEEEecCC---CCCEEEE----eCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence 22221111110 0011100 011 344667765422 358999986644 11 2221
Q ss_pred ---cCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 410 ---EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 410 ---~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
++...+..+. |++||+.+|++..........|..++..
T Consensus 497 ~~~~~~~~~~~~~-~~~~G~~~~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 497 GITEGQPRVVQGE-FNKDGTEVWFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp TCCSSCCEEEEEE-ECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred ccCCCCcceEeee-ECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence 2234455554 9999999999854211112467777763
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-08 Score=101.63 Aligned_cols=304 Identities=13% Similarity=0.083 Sum_probs=162.2
Q ss_pred cCCCCEEEEEeCCCCcCc-ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceE
Q 004067 63 SPDDNLITYLLSPDHSLS-RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKI 141 (776)
Q Consensus 63 SpDG~~ia~~~~~~~~~~-~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~ 141 (776)
.||+++++ +.+...... ..|.++|+++++...-... +..- .+.+|| ||++
T Consensus 81 ~~~~~~vy-V~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------------G~~P-gia~Sp---Dgk~ 131 (426)
T 3c75_H 81 APDARRVY-IQDPAHFAAITQQFVIDGSTGRILGMTDG------------------------GFLP-HPVAAE---DGSF 131 (426)
T ss_dssp CCCTTEEE-EEECTTTCSSEEEEEEETTTTEEEEEEEE------------------------CSSC-EEEECT---TSSC
T ss_pred CCCCCEEE-EECCCcCCCCCeEEEEECCCCEEEEEEEC------------------------CCCC-ceEECC---CCCE
Confidence 47898765 544321111 6899999999887443321 1223 788999 9999
Q ss_pred EEEeC-----------CCcEEEEeCCCCccceecCCC-C-----CCCccCceeCCCCCEEEEEEC---CcEEEEecCCCc
Q 004067 142 IMVPL-----------PDGIYFQDLSCSKPELKLSSS-S-----CSPVIDPHLSSDGTMIAFVRD---CELHVLNLLINE 201 (776)
Q Consensus 142 l~~~~-----------~~~l~~~d~~~~~~~~~l~~~-~-----~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g~ 201 (776)
|++.. ++.|.++|..+.+....+.-. . ......+.+||||++++.... +.|.++|+++++
T Consensus 132 lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 132 FAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 99874 356999999998876333321 1 123567999999998777652 469999999987
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
...-..-+....... . +...-+.+++||+.++. ....+....
T Consensus 212 vv~~I~v~g~~~~~p--------~--g~~~~v~~~~dG~~~~V-~~~~~~v~~--------------------------- 253 (426)
T 3c75_H 212 FDRMLDVPDCYHIFP--------A--SPTVFYMNCRDGSLARV-DFADGETKV--------------------------- 253 (426)
T ss_dssp EEEEEECCSEEEEEE--------E--ETTEEEEEETTSSEEEE-ECCTTCCEE---------------------------
T ss_pred EEEEEEcCCceeecc--------C--CCcEEEEEcCCCCEEEE-ECCCCcEEE---------------------------
Confidence 643222221000000 0 00112445666664433 222111000
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec---
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE--- 358 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--- 358 (776)
.. + ..+.. ........+.+++||+.+++... ...++.+|..++..+.+..-.
T Consensus 254 -------~~---~---~~~~v--------~~~p~~~~~~~~~dg~~~~~~s~----~g~V~ViD~~~~~~~v~~~~~~~~ 308 (426)
T 3c75_H 254 -------TN---T---EVFHT--------EDELLINHPAFSLRSGRLVWPTY----TGKIFQADLTAEGATFRAPIEALT 308 (426)
T ss_dssp -------EE---C---CCCSC--------TTSCBCSCCEECTTTCEEEEEBT----TSEEEEEEECSSCEEECCCEESSC
T ss_pred -------Ee---e---eeecc--------CCCceeeEeeecCCCCEEEEEeC----CCcEEEEeccCCceEEeeeeeecc
Confidence 00 0 00100 01111123578999987777653 236999999876655432110
Q ss_pred ----cCceeecccccccCCC---CccccCCeEEEEecc-------CCceEEEEEeCCCce-eeccccCCeEEEEEEeecC
Q 004067 359 ----LDSWVNLHDCFTPLDK---GVTKYSGGFIWASEK-------TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 359 ----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~-------~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~ 423 (776)
...|. |.+. .++.+++.+|..... .+...|.++|+.+.+ ...|.-+. ...++ .|++
T Consensus 309 ~~~i~~g~~-------p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gi-a~sp 379 (426)
T 3c75_H 309 EAERADDWR-------PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSI-NVSQ 379 (426)
T ss_dssp TTTGGGTEE-------ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEE-EECC
T ss_pred ccccccccc-------cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeE-EEcc
Confidence 01121 2111 123334445544322 134589999988765 34454332 23344 4899
Q ss_pred CCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceee-cCCCCeEEEEEcCCc
Q 004067 424 ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-TNGKGKHVAVLDHNM 476 (776)
Q Consensus 424 dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l-~~~~~~~~~~~spdg 476 (776)
||+..+|.++... ..|..+|+. .++ .+.++ ..+.+ ....++||.
T Consensus 380 Dg~~~lyv~n~~s---~~VsVID~~-t~k----vv~tI~~vG~~-P~~i~~~~~ 424 (426)
T 3c75_H 380 DAEPLLYALSAGT---QTLHIYDAA-TGE----ELRSVDQLGRG-PQIITTHDM 424 (426)
T ss_dssp SSSCEEEEEETTT---TEEEEEETT-TCC----EEEEECCCSSS-CCEEECCCC
T ss_pred CCCEEEEEEcCCC---CeEEEEECC-CCC----EEEEecCCCCC-CcEEEcCCC
Confidence 9994445555422 357777774 232 45555 22222 235667664
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.8e-09 Score=107.31 Aligned_cols=146 Identities=8% Similarity=-0.038 Sum_probs=104.5
Q ss_pred CCceeEcC--CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSP--DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~Sp--DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+..+.|+| +|++|+..+.+ ..|.+||+.+++...+..... ...+....|+|
T Consensus 128 v~~~~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~----------------------~~~i~~~~~~p 180 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNR-----GTIGFQSYEDDSQYIVHSAKS----------------------DVEYSSGVLHK 180 (343)
T ss_dssp EEEEECCC---CCEEEEEETT-----CCEEEEESSSSCEEEEECCCS----------------------SCCCCEEEECT
T ss_pred EEEEEcCCCCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEecCC----------------------CCceEEEEECC
Confidence 57889999 99999866542 369999999988755542111 13578899999
Q ss_pred cCCCceEEEE-eCCCcEEEEeCCCCccc-eecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeE-EeeCCCC
Q 004067 135 TSSKKKIIMV-PLPDGIYFQDLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQ-LTHGANG 211 (776)
Q Consensus 135 ~~~dg~~l~~-~~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~-lt~~~~~ 211 (776)
||+.|+. ..++.|.+||+.+++.. ..+.......+..+.|||||+.|+..+++.|.+||+.+++... +......
T Consensus 181 ---dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 181 ---DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIP 257 (343)
T ss_dssp ---TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-
T ss_pred ---CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccc
Confidence 9999998 47899999999988764 3455412335889999999999999998899999998875422 1110000
Q ss_pred CceecCCcccceecccCCc--ceEEECCCCCeEEEEEe
Q 004067 212 NTVTHGLAEYIAQEEMDRK--TGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~--~~~~wspDg~~l~~~~~ 247 (776)
.... ..++|+|||+.|+..+.
T Consensus 258 ---------------~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 258 ---------------EFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp -------------------CCEEEEECTTSSEEEEEET
T ss_pred ---------------cccccceEEEECCCCCEEEEecC
Confidence 0001 24889999999987653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-08 Score=107.25 Aligned_cols=263 Identities=13% Similarity=0.085 Sum_probs=160.9
Q ss_pred eeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 60 IGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
..+++||++|+..+.+ ..|.+||+.+++........ ...+..+.| |+
T Consensus 137 ~~~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h-----------------------~~~v~~l~~-----~~ 183 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRD-----NTIKIWDKNTLECKRILTGH-----------------------TGSVLCLQY-----DE 183 (435)
T ss_dssp EEEECCSSEEEEEESS-----SCEEEEESSSCCEEEEECCC-----------------------SSCEEEEEC-----CS
T ss_pred EEEEECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEcCC-----------------------CCcEEEEEE-----CC
Confidence 3678899999866542 46999999988875544311 135655544 67
Q ss_pred eEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEe--eCCCCCcee
Q 004067 140 KIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLT--HGANGNTVT 215 (776)
Q Consensus 140 ~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt--~~~~~~~~~ 215 (776)
+.|+.. .++.|.+||+.+++....+..... .+..+.|++ ..++..+. +.|.+|++.+++...+. ..+..
T Consensus 184 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---- 256 (435)
T 1p22_A 184 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-AVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR---- 256 (435)
T ss_dssp SEEEEEETTSCEEEEESSSCCEEEEECCCCS-CEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCS----
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcCCCC-cEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC----
Confidence 777765 788999999999887644544333 477778864 46666554 57999999987654221 11111
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
..+..+.| |++.|+..+.+ ..|.+||+.++
T Consensus 257 ------------~~v~~~~~--~~~~l~s~~~d------------------------------------g~i~vwd~~~~ 286 (435)
T 1p22_A 257 ------------AAVNVVDF--DDKYIVSASGD------------------------------------RTIKVWNTSTC 286 (435)
T ss_dssp ------------SCEEEEEE--ETTEEEEEETT------------------------------------SEEEEEETTTC
T ss_pred ------------CcEEEEEe--CCCEEEEEeCC------------------------------------CeEEEEECCcC
Confidence 01335556 78888776533 35899999988
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCceeecccccccCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~ 374 (776)
+....- ..+...+..+.| +++.++..+ .+..|.+||+.+++...... +......
T Consensus 287 ~~~~~~--------~~~~~~v~~~~~--~~~~l~~g~----~dg~i~iwd~~~~~~~~~~~~h~~~v~~----------- 341 (435)
T 1p22_A 287 EFVRTL--------NGHKRGIACLQY--RDRLVVSGS----SDNTIRLWDIECGACLRVLEGHEELVRC----------- 341 (435)
T ss_dssp CEEEEE--------ECCSSCEEEEEE--ETTEEEEEE----TTSCEEEEETTTCCEEEEECCCSSCEEE-----------
T ss_pred cEEEEE--------cCCCCcEEEEEe--CCCEEEEEe----CCCeEEEEECCCCCEEEEEeCCcCcEEE-----------
Confidence 754431 234556777777 456666655 34569999999887654433 2222111
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCce----------eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEE
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTC----------LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~----------~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~ 444 (776)
+.+ ++.++++...+| .|.+||+.++. ...+..+...+..+. | +++. +++++.++ .+.+|.
T Consensus 342 -~~~-~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~--~~~~-l~s~s~Dg--~i~iwd 411 (435)
T 1p22_A 342 -IRF-DNKRIVSGAYDG--KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-F--DEFQ-IVSSSHDD--TILIWD 411 (435)
T ss_dssp -EEC-CSSEEEEEETTS--CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE-E--CSSC-EEECCSSS--EEEEEC
T ss_pred -EEe-cCCEEEEEeCCC--cEEEEECCCCCCccccccchheeeccCCCCCeEEEE-e--CCCE-EEEEeCCC--EEEEEE
Confidence 123 344566666677 78888875442 344555544455443 4 6665 44444444 378888
Q ss_pred EEe
Q 004067 445 AKL 447 (776)
Q Consensus 445 ~~~ 447 (776)
+.-
T Consensus 412 ~~~ 414 (435)
T 1p22_A 412 FLN 414 (435)
T ss_dssp ---
T ss_pred CCC
Confidence 864
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.05 E-value=9.7e-10 Score=120.06 Aligned_cols=210 Identities=14% Similarity=0.084 Sum_probs=123.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHH--HhCCcEEEEECCCC----CCCCchhhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL--RSKGILVWKLDNRG----TARRGLKFEASI 610 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l--~~~G~~v~~~d~rg----~g~~~~~~~~~~ 610 (776)
+...+|.|... ...+++|+||++|||+........+ .. ...+ ...|++|+++|||. ++.... ..
T Consensus 86 l~l~v~~P~~~-~~~~~~Pviv~iHGGg~~~g~~~~~----~~-~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~-~~--- 155 (522)
T 1ukc_A 86 LFINVFKPSTA-TSQSKLPVWLFIQGGGYAENSNANY----NG-TQVIQASDDVIVFVTFNYRVGALGFLASEK-VR--- 155 (522)
T ss_dssp CEEEEEEETTC-CTTCCEEEEEEECCSTTTSCCSCSC----CC-HHHHHHTTSCCEEEEECCCCHHHHHCCCHH-HH---
T ss_pred CEEEEEECCCC-CCCCCCCEEEEECCCccccCCcccc----Cc-HHHHHhcCCcEEEEEecccccccccccchh-cc---
Confidence 66778888653 1225789999999987544322222 11 1222 25699999999993 221111 00
Q ss_pred hhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC----CCceEEEEEcCCCCCcccccc---
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAPVTSWDGYDT--- 680 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~----~~~~~~~v~~~~~~~~~~~~~--- 680 (776)
....+...+.|+..+++|+.++ ...|+++|.|+|+|.||+++..++... +.+|+++|+.+|.........
T Consensus 156 ~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~ 235 (522)
T 1ukc_A 156 QNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEME 235 (522)
T ss_dssp HSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGH
T ss_pred ccCCCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCHHHHH
Confidence 0011234588999999999875 346899999999999999888777653 568999999988653211100
Q ss_pred cccccc---cCCCC--CCccchhcCChhhhhc---------cCCCc--EEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 681 FYTEKY---MGLPS--EDPVGYEYSSVMHHVH---------KMKGK--LLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 681 ~~~~~~---~~~~~--~~~~~~~~~~~~~~~~---------~i~~P--~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
.+...+ ++... ...+-+...+....+. ....| .+.++...|..+.+....++.+..+..++++.
T Consensus 236 ~~~~~~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~~vp~l 315 (522)
T 1ukc_A 236 FQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVPVL 315 (522)
T ss_dssp HHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSCCCCEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcCCCCCCCEE
Confidence 000111 12111 1111111222111111 11223 45567777877777777777766544556777
Q ss_pred EEEecCCCCCCC
Q 004067 745 ILIFPDERHMPR 756 (776)
Q Consensus 745 ~~~~~~~~H~~~ 756 (776)
+-...+++|.+.
T Consensus 316 ~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 316 VGDDTDEGSNFA 327 (522)
T ss_dssp EEEETBGGGGTS
T ss_pred EEeecchhHHhh
Confidence 777888888764
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-10 Score=120.70 Aligned_cols=112 Identities=14% Similarity=0.024 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCcccccccccccchh-hhHHHHh-CCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 629 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~-~~~~l~~-~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l 629 (776)
...|+||++||++++.. ..| .. ++..|.+ .||.|+++|+||+|.+.......... ...+|+.+.++++
T Consensus 68 ~~~p~vvliHG~~~~~~--~~w----~~~l~~~l~~~~~~~Vi~~D~~G~G~S~~~~~~~~~~----~~~~dl~~li~~L 137 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKGE--DGW----LLDMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNTR----VVGAEIAFLVQVL 137 (452)
T ss_dssp TTSEEEEEECCSCCTTC--TTH----HHHHHHHHHTTCCEEEEEEECHHHHSSCHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCCC--chH----HHHHHHHHHhhCCCEEEEEechhcccCchhHhHhhHH----HHHHHHHHHHHHH
Confidence 34689999999876541 123 22 3455554 49999999999998876321111111 1256788888888
Q ss_pred HHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 630 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 630 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.++..++.+++.|+||||||++|+.++.++|++++++++++|..
T Consensus 138 ~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 138 STEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp HHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred HHhcCCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 76544567899999999999999999999999999999987754
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=110.96 Aligned_cols=184 Identities=10% Similarity=-0.014 Sum_probs=108.1
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|.|+++||.+++.. .|..++..|. .+|.|+.+|+||++. ..+++.+.++.+ .
T Consensus 22 ~~~l~~~hg~~~~~~-------~~~~~~~~l~-~~~~v~~~d~~g~~~----------------~~~~~~~~i~~~---~ 74 (244)
T 2cb9_A 22 GKNLFCFPPISGFGI-------YFKDLALQLN-HKAAVYGFHFIEEDS----------------RIEQYVSRITEI---Q 74 (244)
T ss_dssp SSEEEEECCTTCCGG-------GGHHHHHHTT-TTSEEEEECCCCSTT----------------HHHHHHHHHHHH---C
T ss_pred CCCEEEECCCCCCHH-------HHHHHHHHhC-CCceEEEEcCCCHHH----------------HHHHHHHHHHHh---C
Confidence 367899999776543 3344455565 589999999997631 134555544443 1
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhC---CCceEEEEEcCCCCCccccccc----ccccccCCCCCCccch-------hc
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWDGYDTF----YTEKYMGLPSEDPVGY-------EY 699 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~---~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~ 699 (776)
...++.++||||||.+++.++.+. ++.+..+++.++.......... ....++ .+. ....+ ..
T Consensus 75 --~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 150 (244)
T 2cb9_A 75 --PEGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSITADTENDDSAAYL-PEA-VRETVMQKKRCYQE 150 (244)
T ss_dssp --SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSCCCCC-------CCS-CHH-HHHHHTHHHHHHHH
T ss_pred --CCCCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCcccccccccHHHHHHHh-HHH-HHHHHHHHHHHHHH
Confidence 135799999999999999998764 5678888877765321100000 000000 000 00000 00
Q ss_pred CCh-hhhhccCCCcEEEEecC--CCCccChHHHHHHHHHHHH-CCCCeEEEEecCCCCC-CCCCCcHHHHHHHHHHHHHH
Q 004067 700 SSV-MHHVHKMKGKLLLVHGM--IDENVHFRHTARLINALVA-ARKPYEILIFPDERHM-PRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 700 ~~~-~~~~~~i~~P~lii~G~--~D~~v~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~-~~~~~~~~~~~~~~~~fl~~ 774 (776)
+.. ......+++|+++++|+ .|.. ++... ..+.+ ...+++++.+++ +|. +...+....+.+.+.+||.+
T Consensus 151 ~~~~~~~~~~i~~Pvl~i~g~~~~D~~-~~~~~----~~w~~~~~~~~~~~~i~g-gH~~~~~~~~~~~~~~~i~~~L~~ 224 (244)
T 2cb9_A 151 YWAQLINEGRIKSNIHFIEAGIQTETS-GAMVL----QKWQDAAEEGYAEYTGYG-AHKDMLEGEFAEKNANIILNILDK 224 (244)
T ss_dssp HHHHCCCCSCBSSEEEEEECSBCSCCC-HHHHT----TSSGGGBSSCEEEEECSS-BGGGTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCCcCCCEEEEEccCccccc-cccch----hHHHHhcCCCCEEEEecC-ChHHHcChHHHHHHHHHHHHHHhc
Confidence 000 01235678999999999 8873 33222 12222 124689999996 883 22445677888888998875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-07 Score=98.45 Aligned_cols=267 Identities=12% Similarity=0.041 Sum_probs=163.9
Q ss_pred EEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeC
Q 004067 131 EWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~ 208 (776)
.+++ ||+.|+.. .++.|.+||+.+++....+..... .+..+.|+ ++.|+..+. +.|.+|++.+++.......
T Consensus 124 ~~~~---~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 124 CLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-GVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYG 197 (445)
T ss_dssp EEEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEE---cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCC-CEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECC
Confidence 5777 89988876 788999999998887645544333 46677776 556666664 5799999999876543322
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
... .+..+.| +++.|+..+.+ ..|.
T Consensus 198 h~~-----------------~v~~~~~--~~~~l~s~s~d------------------------------------g~i~ 222 (445)
T 2ovr_B 198 HTS-----------------TVRCMHL--HEKRVVSGSRD------------------------------------ATLR 222 (445)
T ss_dssp CSS-----------------CEEEEEE--ETTEEEEEETT------------------------------------SEEE
T ss_pred CCC-----------------cEEEEEe--cCCEEEEEeCC------------------------------------CEEE
Confidence 211 1334556 46667665533 3589
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCceeeccc
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHD 367 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~ 367 (776)
+||+.+++....- ..+...+..+.| ||+.++... .+..|.+||+.+++...... +......
T Consensus 223 ~wd~~~~~~~~~~--------~~~~~~v~~~~~--~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~---- 284 (445)
T 2ovr_B 223 VWDIETGQCLHVL--------MGHVAAVRCVQY--DGRRVVSGA----YDFMVKVWDPETETCLHTLQGHTNRVYS---- 284 (445)
T ss_dssp EEESSSCCEEEEE--------ECCSSCEEEEEE--CSSCEEEEE----TTSCEEEEEGGGTEEEEEECCCSSCEEE----
T ss_pred EEECCCCcEEEEE--------cCCcccEEEEEE--CCCEEEEEc----CCCEEEEEECCCCcEeEEecCCCCceEE----
Confidence 9999988755431 345566777888 777776665 34569999998877544332 2221111
Q ss_pred ccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+.+ ++..+++...+| .|.+||+.+++ ...+..+...+.. ++++++.++ .+..++. +.+|.+.
T Consensus 285 --------~~~-~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~---~~~~~~~l~-~~~~dg~--i~vwd~~ 347 (445)
T 2ovr_B 285 --------LQF-DGIHVVSGSLDT--SIRVWDVETGNCIHTLTGHQSLTSG---MELKDNILV-SGNADST--VKIWDIK 347 (445)
T ss_dssp --------EEE-CSSEEEEEETTS--CEEEEETTTCCEEEEECCCCSCEEE---EEEETTEEE-EEETTSC--EEEEETT
T ss_pred --------EEE-CCCEEEEEeCCC--eEEEEECCCCCEEEEEcCCcccEEE---EEEeCCEEE-EEeCCCe--EEEEECC
Confidence 123 334556666666 79999987665 3445544443443 344667544 4444433 6676654
Q ss_pred eCCCCCCccccceeecC---C-CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 447 LYPDWNHTLEAPVKLTN---G-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 447 ~~~~g~~~~~~~~~l~~---~-~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
.+. ....+.. + ..+..+.+ +++.|+..... ..|.+++..+++.+..+
T Consensus 348 ---~~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d----g~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 348 ---TGQ----CLQTLQGPNKHQSAVTCLQF--NKNFVITSSDD----GTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp ---TCC----EEEEECSTTSCSSCEEEEEE--CSSEEEEEETT----SEEEEEETTTCCEEEEE
T ss_pred ---CCc----EEEEEccCCCCCCCEEEEEE--CCCEEEEEeCC----CeEEEEECCCCceeeee
Confidence 232 4455543 2 23455566 45666655432 47999999999876665
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-09 Score=107.38 Aligned_cols=153 Identities=13% Similarity=0.040 Sum_probs=95.1
Q ss_pred CceEEEEEcCCCCcccccccccccch-hhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVD-MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
..+.||++||..++.. . .|. .++..|.++||.|+.+|+||+|.+.... ..+++.+.++.+.+
T Consensus 64 ~~~pVVLvHG~~~~~~--~----~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~~~~-----------~~~~la~~I~~l~~ 126 (316)
T 3icv_A 64 VSKPILLVPGTGTTGP--Q----SFDSNWIPLSAQLGYTPCWISPPPFMLNDTQV-----------NTEYMVNAITTLYA 126 (316)
T ss_dssp CSSEEEEECCTTCCHH--H----HHTTTHHHHHHHTTCEEEEECCTTTTCSCHHH-----------HHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCcH--H----HHHHHHHHHHHHCCCeEEEecCCCCCCCcHHH-----------HHHHHHHHHHHHHH
Confidence 3467889999766531 1 233 4578899999999999999987543211 14567777777776
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhC---CCceEEEEEcCCCCCcccccccccccccCCCCCCccc--hhcCCh-hhh
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG--YEYSSV-MHH 705 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 705 (776)
.. ..+++.|+||||||.++.+++..+ +++++.+|+++|...-......... +. ...... +...+. +..
T Consensus 127 ~~--g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~Gt~~a~l~~~--~~--~~~~a~~q~~~gS~fl~~ 200 (316)
T 3icv_A 127 GS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDA--LA--VSAPSVWQQTTGSALTTA 200 (316)
T ss_dssp HT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBSCC--------C--CCCHHHHHTBTTCHHHHH
T ss_pred Hh--CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCCCchhhhhhhh--cc--ccChhHHhhCCCCHHHHH
Confidence 54 336899999999999998777765 5889999998876432211111000 00 000000 001111 111
Q ss_pred hc-----cCCCcEEEEecCCCCccChHH
Q 004067 706 VH-----KMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 706 ~~-----~i~~P~lii~G~~D~~v~~~~ 728 (776)
+. .-..|+..|+...|.+|.|..
T Consensus 201 Ln~~~~~~~~v~~tsI~S~~D~iV~P~~ 228 (316)
T 3icv_A 201 LRNAGGLTQIVPTTNLYSATDEIVQPQV 228 (316)
T ss_dssp HHHTTTTBCSSCEEEEECTTCSSSCCCC
T ss_pred HhhcCCCCCCCcEEEEEcCCCCCccCCc
Confidence 11 114689999999999997665
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-08 Score=106.87 Aligned_cols=246 Identities=10% Similarity=-0.040 Sum_probs=132.0
Q ss_pred EEeecCCCceEEEEe-CCCcEEEEeCCCCccce--ec--CCCCCCCccCceeCC--------CCCEEEEEEC-CcEEEEe
Q 004067 131 EWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPEL--KL--SSSSCSPVIDPHLSS--------DGTMIAFVRD-CELHVLN 196 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~--~l--~~~~~~~~~~~~~Sp--------Dg~~la~~~~-~~l~~~~ 196 (776)
.+++ +++.|+.. .++.|.+||+.+++... .+ ..+....+..++|+| ||+.||-.+. +.|.+||
T Consensus 96 ~~~~---~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 96 SSPV---YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp -CCE---EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred ecCC---CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 3455 77777765 68889999999886541 11 122233588899998 9999998886 4699999
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+.++........... .+..++|+|++..++.....+
T Consensus 173 ~~~~~~~~~~~~~~~-----------------~v~~v~~~p~~~~~l~~~~~d--------------------------- 208 (393)
T 4gq1_A 173 LTDEGPILAGYPLSS-----------------PGISVQFRPSNPNQLIVGERN--------------------------- 208 (393)
T ss_dssp EETTEEEEEEEECSS-----------------CEEEEEEETTEEEEEEEEETT---------------------------
T ss_pred CCCCceeeeecCCCC-----------------CcEEEEECCCCCceEEecCCC---------------------------
Confidence 987654333222211 144788999987544433222
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccC------------CC-----CCCCCcceEEEEEec-cCCeEEEEEEeecCce
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCG------------GT-----DQNYDEEYLARVNWM-HGNILTAQVLNRSQTK 338 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~------------~~-----~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~ 338 (776)
..|.+||+.+++......... .+ ....+...+..+.|+ |||+.|+..+ .+
T Consensus 209 --------~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s----~d 276 (393)
T 4gq1_A 209 --------GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC----KS 276 (393)
T ss_dssp --------SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC----TT
T ss_pred --------CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe----CC
Confidence 246777777665322110000 00 012334455667776 8999777654 44
Q ss_pred EEEEEEECCCCceE-EEEEeccCceeecccccccCC----------CC-ccccCCe-EEEEeccCCceEEEEEeCCCcee
Q 004067 339 LKVLKFDIKTGQRK-VILVEELDSWVNLHDCFTPLD----------KG-VTKYSGG-FIWASEKTGFRHLYLHDINGTCL 405 (776)
Q Consensus 339 ~~l~~~d~~~g~~~-~l~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~ 405 (776)
..+.+||+.++... .+..+....+.. .+.+.. .. .....++ ++.....+| .|++||...++.
T Consensus 277 ~~i~vwd~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg--~V~lwd~~~~~~ 351 (393)
T 4gq1_A 277 GAWLRWNLFANNDYNEISDSTMKLGPK---NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG--LIQLINTYEKDS 351 (393)
T ss_dssp SEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT--EEEEEETTCTTC
T ss_pred CCEEEEECccCCCCceEeeecCccccE---EEccccccccccCcceeEEEccCCCCEEEEEECCCC--EEEEEECCCCcE
Confidence 56889999876543 222221111100 011100 00 0111233 444445567 899999876643
Q ss_pred -eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 406 -GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 406 -~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
..+..+...|..+. |||||++|+..+ .++ ..||++
T Consensus 352 ~~~~~~~~~~V~sva-fspdG~~LA~as-~~G---v~lvrL 387 (393)
T 4gq1_A 352 NSIPIQLGMPIVDFC-WHQDGSHLAIAT-EGS---VLLTRL 387 (393)
T ss_dssp CEEEEECSSCEEEEE-ECTTSSEEEEEE-SSE---EEEEEE
T ss_pred EEEecCCCCcEEEEE-EcCCCCEEEEEe-CCC---eEEEEE
Confidence 44455555677765 999999877664 332 455554
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.2e-10 Score=118.99 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=80.7
Q ss_pred CCceEEEEEcCCCCcccccccccccchh-hhHHHHhC-CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRSK-GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 629 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~-~~~~l~~~-G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l 629 (776)
...|+||++||..++.. ..| .. ++..|.+. ||.|+++|+||+|.+.......... ...+|+.+.++++
T Consensus 68 ~~~p~vvliHG~~~~~~--~~w----~~~~~~~l~~~~~~~Vi~~D~~g~G~S~~~~~~~~~~----~~~~dl~~~i~~L 137 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRGE--DSW----PSDMCKKILQVETTNCISVDWSSGAKAEYTQAVQNIR----IVGAETAYLIQQL 137 (452)
T ss_dssp TTSCEEEEECCTTCCSS--SSH----HHHHHHHHHTTSCCEEEEEECHHHHTSCHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCCC--chH----HHHHHHHHHhhCCCEEEEEecccccccccHHHHHhHH----HHHHHHHHHHHHH
Confidence 34589999999766531 123 22 34556554 9999999999998875321111111 1256778888888
Q ss_pred HHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 630 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 630 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.++..++.+++.|+||||||++|+.++.++|++++++++++|..
T Consensus 138 ~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 138 LTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp HHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred HHhcCCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 75534457899999999999999999999999999999887754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-07 Score=94.28 Aligned_cols=233 Identities=12% Similarity=0.084 Sum_probs=129.7
Q ss_pred CceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCc
Q 004067 138 KKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 138 dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
++.++++. .++.|.++|..+++....+... .....+.++||| ++.... ++.|+++|+++++.......+...
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~--~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~- 127 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGF--TSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMD- 127 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECC--SSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCC--CCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-
Confidence 44455554 4578999999998875355432 236678899998 543333 357999999999875432222100
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
+. ......+++ ++++|+...... ...|.++|++
T Consensus 128 ---~~--------~~~p~~i~~--~~~~lyv~~~~~----------------------------------~~~v~viD~~ 160 (328)
T 3dsm_A 128 ---ME--------SGSTEQMVQ--YGKYVYVNCWSY----------------------------------QNRILKIDTE 160 (328)
T ss_dssp ---TT--------TCBCCCEEE--ETTEEEEEECTT----------------------------------CCEEEEEETT
T ss_pred ---cc--------CCCcceEEE--ECCEEEEEcCCC----------------------------------CCEEEEEECC
Confidence 00 000235556 566665543100 1358999999
Q ss_pred CCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC-------ceEEEEEEECCCCceEEEEEeccCceeec
Q 004067 294 GGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-------TKLKVLKFDIKTGQRKVILVEELDSWVNL 365 (776)
Q Consensus 294 ~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-------~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 365 (776)
+++... +... .....+.++|||+++ +...... ....|+++|+++++......-....+
T Consensus 161 t~~~~~~i~~g----------~~p~~i~~~~dG~l~-v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~--- 226 (328)
T 3dsm_A 161 TDKVVDELTIG----------IQPTSLVMDKYNKMW-TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDW--- 226 (328)
T ss_dssp TTEEEEEEECS----------SCBCCCEECTTSEEE-EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCC---
T ss_pred CCeEEEEEEcC----------CCccceEEcCCCCEE-EEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCC---
Confidence 887543 3321 122357889999843 3332210 02579999999987654332111100
Q ss_pred ccccccCCCCcccc-CCeEEEEeccCCceEEEEEeCCCceee--c-cccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 366 HDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCLG--P-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 366 ~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~g~~~~--~-lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
+..++.+ +++.+|+++. .|+++|+++++.. . ++.+......+ .++|+++.||+....+-.....
T Consensus 227 -------p~~la~~~d~~~lyv~~~----~v~~~d~~t~~~~~~~~~~~~~~~p~gi-~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 227 -------PSEVQLNGTRDTLYWINN----DIWRMPVEADRVPVRPFLEFRDTKYYGL-TVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp -------CEEEEECTTSCEEEEESS----SEEEEETTCSSCCSSCSBCCCSSCEEEE-EECTTTCCEEEEECTTSSSEEE
T ss_pred -------ceeEEEecCCCEEEEEcc----EEEEEECCCCceeeeeeecCCCCceEEE-EEcCCCCeEEEEcccccccCCE
Confidence 1112333 2445666654 7999999887643 2 22111223343 4888777778876211111246
Q ss_pred EEEEEe
Q 004067 442 LYCAKL 447 (776)
Q Consensus 442 l~~~~~ 447 (776)
|+.++.
T Consensus 295 V~v~d~ 300 (328)
T 3dsm_A 295 VYRYSP 300 (328)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 777776
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-08 Score=100.36 Aligned_cols=204 Identities=10% Similarity=0.055 Sum_probs=124.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..|.|+|||+.|+|..... ..|++++.+ ++.+.+... ........+++
T Consensus 47 ~egp~~~~~g~~l~~~d~~~----~~i~~~~~~-g~~~~~~~~------------------------~~~~~gl~~d~-- 95 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVG----RRVLGWRED-GTVDVLLDA------------------------TAFTNGNAVDA-- 95 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTT----TEEEEEETT-SCEEEEEES------------------------CSCEEEEEECT--
T ss_pred ccCCeEeCCCCEEEEEECCC----CEEEEEeCC-CCEEEEeCC------------------------CCccceeeECC--
Confidence 46899999999999987654 469999985 555544431 12466788999
Q ss_pred CCceEEEEeC-CCcEEEEeCCCCccceecCCC-C---CCCccCceeCCCCCEEEEEE-------------------CCcE
Q 004067 137 SKKKIIMVPL-PDGIYFQDLSCSKPELKLSSS-S---CSPVIDPHLSSDGTMIAFVR-------------------DCEL 192 (776)
Q Consensus 137 ~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~-~---~~~~~~~~~SpDg~~la~~~-------------------~~~l 192 (776)
||+.++... ...|++++.+ ++.+ .+... . ......+.++|||+. .++. ...|
T Consensus 96 -dG~l~v~~~~~~~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l-~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 96 -QQRLVHCEHGRRAITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAI-WFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp -TSCEEEEETTTTEEEEECTT-SCEE-EEECEETTEECSCCCCEEECTTSCE-EEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred -CCCEEEEECCCCEEEEECCC-CCEE-EEEeccCCCccCCCCCEEECCCCCE-EEeCcCCCccccccccccccccCCCeE
Confidence 999666554 3679999987 4444 33221 1 112456899999984 3321 1359
Q ss_pred EEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 193 HVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 193 ~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
|.++.++|+.+.+. ... ...+++|+|||+.|++.......
T Consensus 172 ~~~d~~~g~~~~~~-~~~------------------~p~gl~~spdg~~lyv~~~~~~~--------------------- 211 (305)
T 3dr2_A 172 YRLPPDGSPLQRMA-DLD------------------HPNGLAFSPDEQTLYVSQTPEQG--------------------- 211 (305)
T ss_dssp EEECSSSCCCEEEE-EES------------------SEEEEEECTTSSEEEEEECCC-----------------------
T ss_pred EEEcCCCCcEEEEe-cCC------------------CCcceEEcCCCCEEEEEecCCcC---------------------
Confidence 99999888887765 211 13368899999988765432100
Q ss_pred ecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 273 HAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
.....|++++++++.......-. .........+.+++||+ |+... . . .|++|++++....
T Consensus 212 ---------~~~~~i~~~~~~~~~l~~~~~~~-----~~~~~~pdgi~~d~~G~-lwv~~--~--~-gv~~~~~~g~~~~ 271 (305)
T 3dr2_A 212 ---------HGSVEITAFAWRDGALHDRRHFA-----SVPDGLPDGFCVDRGGW-LWSSS--G--T-GVCVFDSDGQLLG 271 (305)
T ss_dssp ----------CCCEEEEEEEETTEEEEEEEEE-----CCSSSCCCSEEECTTSC-EEECC--S--S-EEEEECTTSCEEE
T ss_pred ---------CCCCEEEEEEecCCCccCCeEEE-----ECCCCCCCeEEECCCCC-EEEec--C--C-cEEEECCCCCEEE
Confidence 00134777777655421111100 00112233578899998 33332 1 2 3999999655555
Q ss_pred EEE
Q 004067 353 VIL 355 (776)
Q Consensus 353 ~l~ 355 (776)
.+.
T Consensus 272 ~~~ 274 (305)
T 3dr2_A 272 HIP 274 (305)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=119.34 Aligned_cols=130 Identities=19% Similarity=0.239 Sum_probs=89.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC-cEEEEECCC----CCCCCchhhhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-ILVWKLDNR----GTARRGLKFEASIK 611 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v~~~d~r----g~g~~~~~~~~~~~ 611 (776)
+...+|.|... .+++|+||++|||+........+ ......|+++| ++|+.+||| |++.++..... ..
T Consensus 85 l~l~v~~P~~~---~~~~Pviv~iHGGg~~~g~~~~~----~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~~-~~ 156 (498)
T 2ogt_A 85 LYLNIWSPAAD---GKKRPVLFWIHGGAFLFGSGSSP----WYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGE-AY 156 (498)
T ss_dssp CEEEEEESCSS---SCCEEEEEEECCSTTTSCCTTCG----GGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTCG-GG
T ss_pred cEEEEEecCCC---CCCCcEEEEEcCCccCCCCCCCC----cCCHHHHHhCCCEEEEeCCCcCchhhccCchhhccc-cc
Confidence 55667788632 25789999999987432211111 11245677665 999999999 66554431110 01
Q ss_pred hccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCCC
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTS 674 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~~ 674 (776)
...+...+.|+..+++|+.++ ...|+++|.|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 157 ~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 157 AQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 112234488999999999886 346899999999999999998888753 467999999998654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-07 Score=98.41 Aligned_cols=252 Identities=9% Similarity=0.026 Sum_probs=145.4
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
|..+..+.+ |+.+++...... ..|.++|+++++. +++.. ......+.+
T Consensus 43 g~~~~~i~~--~~~~lyv~~~~~----~~v~viD~~t~~~~~~i~~-------------------------~~~p~~i~~ 91 (328)
T 3dsm_A 43 GDVAQSMVI--RDGIGWIVVNNS----HVIFAIDINTFKEVGRITG-------------------------FTSPRYIHF 91 (328)
T ss_dssp BSCEEEEEE--ETTEEEEEEGGG----TEEEEEETTTCCEEEEEEC-------------------------CSSEEEEEE
T ss_pred CccceEEEE--ECCEEEEEEcCC----CEEEEEECcccEEEEEcCC-------------------------CCCCcEEEE
Confidence 333455555 567776655432 5799999999887 44432 134667888
Q ss_pred eecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCC----CccCceeCCCCCEEEEEE---CCcEEEEecCCCcee
Q 004067 133 VKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCS----PVIDPHLSSDGTMIAFVR---DCELHVLNLLINEQR 203 (776)
Q Consensus 133 sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~----~~~~~~~SpDg~~la~~~---~~~l~~~~l~~g~~~ 203 (776)
++ || +|+++ .++.|+++|+.+++....+..+... ....+.+ ++++|.... ++.|+++|+++++..
T Consensus 92 ~~---~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 92 LS---DE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp EE---TT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred eC---CC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 89 99 46555 4788999999998866333322200 2344566 566655443 346999999998765
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.....+.. ...++++|||+ +++......... .| . ..
T Consensus 166 ~~i~~g~~------------------p~~i~~~~dG~-l~v~~~~~~~~~--------------------~~--~---~~ 201 (328)
T 3dsm_A 166 DELTIGIQ------------------PTSLVMDKYNK-MWTITDGGYEGS--------------------PY--G---YE 201 (328)
T ss_dssp EEEECSSC------------------BCCCEECTTSE-EEEEBCCBCTTC--------------------SS--C---BC
T ss_pred EEEEcCCC------------------ccceEEcCCCC-EEEEECCCccCC--------------------cc--c---cC
Confidence 43332211 23577999997 555442110000 00 0 01
Q ss_pred eEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCce
Q 004067 284 KVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
...|+++|.++++.. .+..+ .......++|+|||+.+++.. . .|+++|+++++.... .+
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~--------~g~~p~~la~~~d~~~lyv~~-~-----~v~~~d~~t~~~~~~------~~ 261 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFK--------LGDWPSEVQLNGTRDTLYWIN-N-----DIWRMPVEADRVPVR------PF 261 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECC--------TTCCCEEEEECTTSCEEEEES-S-----SEEEEETTCSSCCSS------CS
T ss_pred CceEEEEECCCCeEEEEEecC--------CCCCceeEEEecCCCEEEEEc-c-----EEEEEECCCCceeee------ee
Confidence 246899999998865 34332 122466799999999776653 2 699999998875210 01
Q ss_pred eecccccccCCCCccccC-CeEEEEecc---CCceEEEEEeCCCceeeccc
Q 004067 363 VNLHDCFTPLDKGVTKYS-GGFIWASEK---TGFRHLYLHDINGTCLGPIT 409 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~---~g~~~l~~~~~~g~~~~~lt 409 (776)
.... ...+.++..++ ++.+|+++. .+...|++++++|.....+.
T Consensus 262 ~~~~---~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 262 LEFR---DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp BCCC---SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred ecCC---CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 0000 00111223333 344455541 22347888888865555554
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-10 Score=112.12 Aligned_cols=185 Identities=14% Similarity=0.051 Sum_probs=107.9
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.+.|+++||.+++.. .|..++..|.+ |.|+.+|++|++.. ..++.+.++.+.
T Consensus 17 ~~~l~~~hg~~~~~~-------~~~~~~~~l~~--~~v~~~d~~g~~~~----------------~~~~~~~i~~~~--- 68 (230)
T 1jmk_C 17 EQIIFAFPPVLGYGL-------MYQNLSSRLPS--YKLCAFDFIEEEDR----------------LDRYADLIQKLQ--- 68 (230)
T ss_dssp SEEEEEECCTTCCGG-------GGHHHHHHCTT--EEEEEECCCCSTTH----------------HHHHHHHHHHHC---
T ss_pred CCCEEEECCCCCchH-------HHHHHHHhcCC--CeEEEecCCCHHHH----------------HHHHHHHHHHhC---
Confidence 378999999776543 34445666654 99999999986521 335555554441
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhC---CCceEEEEEcCCCCCcc--ccc-----ccccccccCCCCCC----c---cc
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWD--GYD-----TFYTEKYMGLPSED----P---VG 696 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~---~~~~~~~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~----~---~~ 696 (776)
...++.++||||||.+++.++.+. ++.+..+++.++..... .+. ..........+... . ..
T Consensus 69 --~~~~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (230)
T 1jmk_C 69 --PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHG 146 (230)
T ss_dssp --CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHHHH
T ss_pred --CCCCeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCcccccccccHHHHHHHHHhcChhhhhhhhHHHHHH
Confidence 135799999999999999998764 35678887776543210 000 00000000000000 0 00
Q ss_pred hh-------cCCh-hhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCC--CCCCCCcHHHHHH
Q 004067 697 YE-------YSSV-MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH--MPRRHRDRIYMEE 766 (776)
Q Consensus 697 ~~-------~~~~-~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H--~~~~~~~~~~~~~ 766 (776)
+. .... .....++++|+++++|+.|..++. ....+.+ ....+++++.+++ +| .+ ..+....+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~-~~~~w~~---~~~~~~~~~~i~g-~H~~~~-~~~~~~~~~~ 220 (230)
T 1jmk_C 147 LKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPE-WLASWEE---ATTGAYRMKRGFG-THAEML-QGETLDRNAG 220 (230)
T ss_dssp HHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCT-TEECSGG---GBSSCEEEEECSS-CGGGTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccEEEEEeCCCCCCcc-ccchHHH---hcCCCeEEEEecC-ChHHHc-CcHhHHHHHH
Confidence 00 0000 012356789999999999998762 1111111 1234688999997 88 54 4455677778
Q ss_pred HHHHHHHH
Q 004067 767 RIWEFIER 774 (776)
Q Consensus 767 ~~~~fl~~ 774 (776)
.+.+||.+
T Consensus 221 ~i~~~l~~ 228 (230)
T 1jmk_C 221 ILLEFLNT 228 (230)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 88888754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-07 Score=99.78 Aligned_cols=273 Identities=11% Similarity=0.025 Sum_probs=159.8
Q ss_pred EEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeC
Q 004067 131 EWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~ 208 (776)
.+++ ||+.|+.. .++.|.+||+.+++....+..... .+..+.| |++.|+..+. +.|.+|++.+++.......
T Consensus 138 ~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 211 (435)
T 1p22_A 138 CLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH 211 (435)
T ss_dssp EEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred EEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC-cEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC
Confidence 5667 88888876 788999999999887744544333 3655555 8888888775 5799999999876543322
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
... .+..+.|++ +.|+..+.+ ..|.
T Consensus 212 h~~-----------------~v~~l~~~~--~~l~s~s~d------------------------------------g~i~ 236 (435)
T 1p22_A 212 HCE-----------------AVLHLRFNN--GMMVTCSKD------------------------------------RSIA 236 (435)
T ss_dssp CCS-----------------CEEEEECCT--TEEEEEETT------------------------------------SCEE
T ss_pred CCC-----------------cEEEEEEcC--CEEEEeeCC------------------------------------CcEE
Confidence 211 134566764 466655432 2478
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccc
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDC 368 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 368 (776)
+||+.+++....... ...+...+..+.| |++.++..+ .+..|.+||+.+++...........-..
T Consensus 237 vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~--~~~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~v~~---- 301 (435)
T 1p22_A 237 VWDMASPTDITLRRV-----LVGHRAAVNVVDF--DDKYIVSAS----GDRTIKVWNTSTCEFVRTLNGHKRGIAC---- 301 (435)
T ss_dssp EEECSSSSCCEEEEE-----ECCCSSCEEEEEE--ETTEEEEEE----TTSEEEEEETTTCCEEEEEECCSSCEEE----
T ss_pred EEeCCCCCCceeeeE-----ecCCCCcEEEEEe--CCCEEEEEe----CCCeEEEEECCcCcEEEEEcCCCCcEEE----
Confidence 999988764321110 1455667788888 777777665 4567999999998765444322211000
Q ss_pred cccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 369 FTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+.+ ++.++++...+| .|.+||+.+++ ...+..+...+..+. + +++.++..+ .++. +.+|.+..
T Consensus 302 -------~~~-~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~-~--~~~~l~sg~-~dg~--i~vwd~~~ 365 (435)
T 1p22_A 302 -------LQY-RDRLVVSGSSDN--TIRLWDIECGACLRVLEGHEELVRCIR-F--DNKRIVSGA-YDGK--IKVWDLVA 365 (435)
T ss_dssp -------EEE-ETTEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEEE-C--CSSEEEEEE-TTSC--EEEEEHHH
T ss_pred -------EEe-CCCEEEEEeCCC--eEEEEECCCCCEEEEEeCCcCcEEEEE-e--cCCEEEEEe-CCCc--EEEEECCC
Confidence 122 234566666667 89999988665 455555555555543 4 777655444 4433 78887753
Q ss_pred CCCCCCc--cccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCc
Q 004067 448 YPDWNHT--LEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 501 (776)
Q Consensus 448 ~~~g~~~--~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~ 501 (776)
....... ......+..+.+ +..++| |++.|+.... + ..|.++++.++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~--D--g~i~iwd~~~~~ 416 (435)
T 1p22_A 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH--D--DTILIWDFLNDP 416 (435)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS--S--SEEEEEC-----
T ss_pred CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC--C--CEEEEEECCCCC
Confidence 1100000 002333444332 445566 7777654432 2 469999886654
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.6e-10 Score=122.11 Aligned_cols=126 Identities=20% Similarity=0.321 Sum_probs=88.0
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCC-C---CCCCchhhhhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR-G---TARRGLKFEASIKH 612 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r-g---~g~~~~~~~~~~~~ 612 (776)
+...+|.|.... ..+++|+||++|||+........| .. ...+...|++|+.+||| | +...+. ..
T Consensus 99 l~lnv~~P~~~~-~~~~~Pv~v~iHGG~~~~g~~~~~----~~-~~la~~~g~vvv~~nYRlg~~gf~~~~~------~~ 166 (542)
T 2h7c_A 99 LYLNIYTPADLT-KKNRLPVMVWIHGGGLMVGAASTY----DG-LALAAHENVVVVTIQYRLGIWGFFSTGD------EH 166 (542)
T ss_dssp CEEEEEECSCTT-SCCCEEEEEEECCSTTTSCCSTTS----CC-HHHHHHHTCEEEEECCCCHHHHHCCCSS------TT
T ss_pred cEEEEEECCCCC-CCCCCCEEEEECCCcccCCCcccc----CH-HHHHhcCCEEEEecCCCCccccCCCCCc------cc
Confidence 556688887642 235789999999987543322222 11 22333589999999999 2 221111 01
Q ss_pred ccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCC
Q 004067 613 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 674 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~ 674 (776)
..+...+.|+..+++|+.++ ...|+++|.|+|+|+||++++.++.. .+.+|+++|+.+|...
T Consensus 167 ~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 167 SRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred CccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 12233478999999999875 35799999999999999999998876 3678999999988654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-06 Score=92.36 Aligned_cols=371 Identities=12% Similarity=0.053 Sum_probs=192.3
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..|..+++.|.+.+|+|..-.. ...|++.+++|...+.+..... .......+++
T Consensus 127 ~~P~~Iavdp~~g~ly~tD~g~---~~~I~r~~~dG~~~~~l~~~~~-----------------------~~P~Glald~ 180 (619)
T 3s94_A 127 DQPRAIALDPSSGFMYWTDWGE---VPKIERAGMDGSSRFIIINSEI-----------------------YWPNGLTLDY 180 (619)
T ss_dssp SCCCCEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEECSSC-----------------------SSEEEEEEET
T ss_pred CCCceEEEecCCCeEEEeccCC---CCEEEEEECCCCceEEEEeCCC-----------------------CCCcEEEEEc
Confidence 4478999999988898876432 3579999999888777764211 2345788898
Q ss_pred cCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC---CcEEEEecCCCceeEEeeCC
Q 004067 135 TSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD---CELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 135 ~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g~~~~lt~~~ 209 (776)
++++|+++ ....|+.+|++|...+ .+..........+++..| .| |.++ +.|++++..+|+........
T Consensus 181 ---~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~~P~gi~~~~~--~l-y~td~~~~~V~~~d~~tg~~~~~i~~~ 253 (619)
T 3s94_A 181 ---EEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFALTLFED--IL-YWTDWSTHSILACNKYTGEGLREIHSD 253 (619)
T ss_dssp ---TTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS--EE-EEECTTTCSEEEEESSSCCCCEECCSC
T ss_pred ---cCCEEEEEeCCCCeEEEecCCCCccE-EEEeCCCCCceEEEEeCC--EE-EEecCCCCEEEEEECCCCcccEEEecC
Confidence 99999988 4567999999998776 443322112334455444 44 5544 46999999888654433222
Q ss_pred CCCceecCCcccceecccCCcceEEECCC------CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC--
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLD------SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS-- 281 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspD------g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-- 281 (776)
... ..++.-+.. ..... ..+|= -..|...+.... .+.-....+- ....+.+-...+..
T Consensus 254 ~~~--p~~i~v~~~--~~qp~---~~n~C~~~ng~Cs~lCl~~~~~~---~~~C~C~~g~----~l~~d~~~C~~~~~~~ 319 (619)
T 3s94_A 254 IFS--PMDIHAFSQ--QRQPN---ATNPCGIDNGGCSHLCLMSPVKP---FYQCACPTGV----KLLENGKTCKDGATEL 319 (619)
T ss_dssp CCC--CSEEEECCG--GGSCC---CCCTTTTTGGGCSSEEEECSSTT---SEEEECCTTC----CBCTTSSCBCSSCSEE
T ss_pred CCC--CcEEEEEcc--ccCCC---ccccccCCCCcccceEECCCCCC---CceEeCCchh----eecccCcccCCCCceE
Confidence 110 000000000 00000 00000 011222111000 0000000000 00000000000000
Q ss_pred ---CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec
Q 004067 282 ---NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 282 ---~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 358 (776)
..+..|..++++++....+.++ .........+.|.+.+..|+++.. ....|++++++++..+.+....
T Consensus 320 Ll~~~~~~i~~i~l~~~~~~~~~~~------~~~l~~~~~ld~d~~~~~ly~sD~---~~~~I~r~~~~g~~~~~v~~~~ 390 (619)
T 3s94_A 320 LLLARRTDLRRISLDTPDFTDIVLQ------LEDIRHAIAIDYDPVEGYIYWTDD---EVRAIRRSFIDGSGSQFVVTAQ 390 (619)
T ss_dssp EEEEESSCEEEEESSSTTCCCEECC------CSCCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSS
T ss_pred EEEEcccceEEEecCCCccceeEEe------ccccCccEEEEEEcCCCeEEEEeC---CCCeEEEEEcCCCccEEEEECC
Confidence 0001233334443322211111 122234567889886556666542 2346999999887666654321
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCe-EEEEEEeecCCCcEEEEEEccCCC
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~-~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
. -.|.+-.+.|.++.+||+.... ..|.+.+++|+..+.|..... ....+ +++|....||++.....
T Consensus 391 ~---------~~p~GlAvD~~~~~lY~tD~~~--~~I~v~~~~G~~~~~l~~~~l~~P~~i-avdp~~G~ly~tD~g~~- 457 (619)
T 3s94_A 391 I---------AHPDGIAVDWVARNLYWTDTGT--DRIEVTRLNGTMRKILISEDLEEPRAI-VLDPMVGYMYWTDWGEI- 457 (619)
T ss_dssp C---------SCCCEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECTTCCSEEEE-EEETTTTEEEEEECSSS-
T ss_pred C---------CCcCceEEecccCcEEEEeCCC--CcEEEEeCCCCeEEEEEECCCCCeeeE-EEEcCCCcEEEecCCCC-
Confidence 1 0121111233456677765434 489999999887666654332 23344 48887777999876543
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCC--CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
..|++.++ +|+ ..+.|... .....+++++++++|.++-... ..|++++.. |...+.+
T Consensus 458 --~~I~r~~~--dG~----~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~---~~I~~~~~d-G~~~~~~ 516 (619)
T 3s94_A 458 --PKIERAAL--DGS----DRVVLVNTSLGWPNGLALDYDEGKIYWGDAKT---DKIEVMNTD-GTGRRVL 516 (619)
T ss_dssp --CEEEEEET--TSC----SCEEEECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEESS-SCCCEEE
T ss_pred --CEEEEEcc--CCC----ccEEEEeCCCCCCeeeEEcccCCEEEEEECCC---CEEEEEecC-CCceEEE
Confidence 47999998 675 33334332 2356889999998888775443 379999884 4433434
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-09 Score=107.88 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=78.9
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
++.|+||++||..+....... ...|..+++.|.++||.|+++|+||+|.+.... ...+++.+.++.+++
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~-~~~w~~l~~~L~~~G~~V~~~d~~g~g~s~~~~----------~~~~~l~~~i~~~l~ 74 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGV-LEYWYGIQEDLQQRGATVYVANLSGFQSDDGPN----------GRGEQLLAYVKTVLA 74 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTT-EESSTTHHHHHHHTTCCEEECCCCSSCCSSSTT----------SHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccch-HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCCC----------CCHHHHHHHHHHHHH
Confidence 345789999997665421100 024555788999999999999999998774321 124455555555544
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.. +.+++.|+||||||.++..++.++|++++++|.+++..
T Consensus 75 ~~--~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 75 AT--GATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp HH--CCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred Hh--CCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 32 34689999999999999999999999999999988754
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=111.95 Aligned_cols=197 Identities=12% Similarity=0.047 Sum_probs=109.9
Q ss_pred EEEEEcC--CCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc----hhhhhhhhhccCCccHHHHHHHHHHH
Q 004067 556 TLISVYG--GPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG----LKFEASIKHNCGRIDAEDQLTGAEWL 629 (776)
Q Consensus 556 ~vl~~HG--~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~----~~~~~~~~~~~~~~~~~D~~~~i~~l 629 (776)
.|+++|| +++... .|..++..|. .++.|+.+|+||+|.+. ....... . ...+++.+.++.+
T Consensus 91 ~l~~~hg~g~~~~~~-------~~~~l~~~L~-~~~~v~~~d~~G~g~~~~~~~~~~~~~~-~----~~a~~~~~~i~~~ 157 (319)
T 2hfk_A 91 VLVGCTGTAANGGPH-------EFLRLSTSFQ-EERDFLAVPLPGYGTGTGTGTALLPADL-D----TALDAQARAILRA 157 (319)
T ss_dssp EEEEECCCCTTCSTT-------TTHHHHHTTT-TTCCEEEECCTTCCBC---CBCCEESSH-H----HHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCcHH-------HHHHHHHhcC-CCCceEEecCCCCCCCcccccCCCCCCH-H----HHHHHHHHHHHHh
Confidence 7899997 333322 2334455554 68999999999998751 1110000 0 0123333333332
Q ss_pred HHcCCCCCCcEEEEeechHHHHHHHHHhhC----CCceEEEEEcCCCCCccc--cccc---cccccc---CCCCCCc---
Q 004067 630 IKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAPVTSWDG--YDTF---YTEKYM---GLPSEDP--- 694 (776)
Q Consensus 630 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----~~~~~~~v~~~~~~~~~~--~~~~---~~~~~~---~~~~~~~--- 694 (776)
. ...++.++||||||.+|..+|.+. ++.+..+++.++...... .... ..+..+ ..+....
T Consensus 158 ~-----~~~p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 232 (319)
T 2hfk_A 158 A-----GDAPVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLL 232 (319)
T ss_dssp H-----TTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHH
T ss_pred c-----CCCCEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHH
Confidence 1 235799999999999999999875 456888888776532110 0000 000000 0000000
Q ss_pred --cchhcCChhhhhccCCCcEEEEecCCCCccChHH-HHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHH
Q 004067 695 --VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 771 (776)
Q Consensus 695 --~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f 771 (776)
..|...-.......+++|+++++| .|..+++.. ...+.+. ....++++.++ ++|.....+....+.+.+.+|
T Consensus 233 ~~~~~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~~~~~~~~~~~~---~~~~~~~~~v~-g~H~~~~~e~~~~~~~~i~~~ 307 (319)
T 2hfk_A 233 AMGRYARFLAGPRPGRSSAPVLLVRA-SEPLGDWQEERGDWRAH---WDLPHTVADVP-GDHFTMMRDHAPAVAEAVLSW 307 (319)
T ss_dssp HHHHHHHHHHSCCCCCCCSCEEEEEE-SSCSSCCCGGGCCCSCC---CSSCSEEEEES-SCTTHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCCCEEEEEc-CCCCCCccccccchhhc---CCCCCEEEEeC-CCcHHHHHHhHHHHHHHHHHH
Confidence 000000000113567899999999 998887654 2222111 12357889998 589742324788899999999
Q ss_pred HHHh
Q 004067 772 IERT 775 (776)
Q Consensus 772 l~~~ 775 (776)
|.+.
T Consensus 308 L~~~ 311 (319)
T 2hfk_A 308 LDAI 311 (319)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9753
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.90 E-value=6.1e-08 Score=102.97 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=73.8
Q ss_pred CCceeEcC--------CCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 004067 57 PTSIGFSP--------DDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGV 127 (776)
Q Consensus 57 ~~~~~~Sp--------DG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (776)
+..++||| ||+.||-.+.+ ..|.+||+.++.. ..+..+ ...+
T Consensus 139 v~~v~~~p~~~~~~~~d~~~las~s~D-----~tv~~Wd~~~~~~~~~~~~~------------------------~~~v 189 (393)
T 4gq1_A 139 VNDIDIADVYSADNRLAEQVIASVGDD-----CTLIIWRLTDEGPILAGYPL------------------------SSPG 189 (393)
T ss_dssp EEEEEEEEEECTTCSEEEEEEEEEETT-----SEEEEEEEETTEEEEEEEEC------------------------SSCE
T ss_pred eEEEEEccccccccCCCCCEEEEEECC-----CeEEEEECCCCceeeeecCC------------------------CCCc
Confidence 68899998 99999966653 4799999977654 344432 2367
Q ss_pred eeEEEeecCCCceE-EEEe-CCCcEEEEeCCCCccceecCC------------------------CCCCCccCceeC-CC
Q 004067 128 TRYEWVKTSSKKKI-IMVP-LPDGIYFQDLSCSKPELKLSS------------------------SSCSPVIDPHLS-SD 180 (776)
Q Consensus 128 ~~~~~sp~~~dg~~-l~~~-~~~~l~~~d~~~~~~~~~l~~------------------------~~~~~~~~~~~S-pD 180 (776)
.+..|+| ++.. |+.. .++.|.+||+.+++....+.. .....+....|+ ||
T Consensus 190 ~~v~~~p---~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d 266 (393)
T 4gq1_A 190 ISVQFRP---SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD 266 (393)
T ss_dssp EEEEEET---TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT
T ss_pred EEEEECC---CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC
Confidence 8899999 9875 4443 788999999988764311110 111123445665 89
Q ss_pred CCEEEEEEC-CcEEEEecCCCce
Q 004067 181 GTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 181 g~~la~~~~-~~l~~~~l~~g~~ 202 (776)
|+.|+-... +.+.+|++.++..
T Consensus 267 g~~l~s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 267 GSGILAMCKSGAWLRWNLFANND 289 (393)
T ss_dssp TCEEEEECTTSEEEEEEC-----
T ss_pred CCEEEEEeCCCCEEEEECccCCC
Confidence 999887765 4689999987754
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-09 Score=107.01 Aligned_cols=105 Identities=17% Similarity=0.117 Sum_probs=75.9
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
++.|+||++||..+...... ...|..+++.|.++||.|+++|+||+|.+.. ..+++.+.++.+++
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~--~~~~~~~~~~L~~~G~~v~~~d~~g~g~s~~-------------~~~~~~~~i~~~~~ 69 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILG--VDYWFGIPSALRRDGAQVYVTEVSQLDTSEV-------------RGEQLLQQVEEIVA 69 (285)
T ss_dssp CCSSCEEEECCTTCCSEETT--EESSTTHHHHHHHTTCCEEEECCCSSSCHHH-------------HHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCCCccccc--cccHHHHHHHHHhCCCEEEEEeCCCCCCchh-------------hHHHHHHHHHHHHH
Confidence 34578999999766532100 1134556888999999999999999876531 13344444444444
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.. +.+++.++||||||.++..++.++|+.++++|.+++..
T Consensus 70 ~~--~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 70 LS--GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp HH--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred Hh--CCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 32 34689999999999999999999999999999988753
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-09 Score=110.75 Aligned_cols=195 Identities=12% Similarity=0.033 Sum_probs=112.3
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHH-HHHHHHc
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQ 632 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~ 632 (776)
.|.|+++||.+++.. .|..++..| ..+|.|+++|++|+|.+... ...++++... ++.+.+.
T Consensus 101 ~~~l~~lhg~~~~~~-------~~~~l~~~L-~~~~~v~~~d~~g~~~~~~~----------~~~~~~~a~~~~~~i~~~ 162 (329)
T 3tej_A 101 GPTLFCFHPASGFAW-------QFSVLSRYL-DPQWSIIGIQSPRPNGPMQT----------AANLDEVCEAHLATLLEQ 162 (329)
T ss_dssp SCEEEEECCTTSCCG-------GGGGGGGTS-CTTCEEEEECCCTTTSHHHH----------CSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCcccch-------HHHHHHHhc-CCCCeEEEeeCCCCCCCCCC----------CCCHHHHHHHHHHHHHHh
Confidence 378999999776543 233445555 46899999999998754211 0123344333 3333332
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhh---CCCceEEEEEcCCCCCccc-ccc--------cc-------ccccc-C-CCC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAPVTSWDG-YDT--------FY-------TEKYM-G-LPS 691 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~---~~~~~~~~v~~~~~~~~~~-~~~--------~~-------~~~~~-~-~~~ 691 (776)
. ...++.++||||||.++..+|.+ +++.+..+++..+...... +.. .. ...+. . ...
T Consensus 163 ~--~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (329)
T 3tej_A 163 Q--PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGS 240 (329)
T ss_dssp C--SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCC
T ss_pred C--CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhcccc
Confidence 2 23589999999999999999998 8999999998877654211 000 00 00000 0 000
Q ss_pred CCccchh-------cC-Chh--hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC-CCCCc
Q 004067 692 EDPVGYE-------YS-SVM--HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP-RRHRD 760 (776)
Q Consensus 692 ~~~~~~~-------~~-~~~--~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~-~~~~~ 760 (776)
.....+. .. ..+ .....+.+|++++.|..|..++......+.+ .-.+++++.++ ++|.. .....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~~~~d~~~~~~~~~~w~~----~~~~~~~~~v~-g~H~~~~~~~~ 315 (329)
T 3tej_A 241 TSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSP----WIAELDIYRQD-CAHVDIISPGT 315 (329)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEGGGCCTTCCHHHHHTT----TEEEEEEEEES-SCGGGGGSTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEeccCCCCCCCchhhHHH----hcCCcEEEEec-CChHHhCCChH
Confidence 0000000 00 000 0123456799999999998776543333222 22468888898 57763 33344
Q ss_pred HHHHHHHHHHHHH
Q 004067 761 RIYMEERIWEFIE 773 (776)
Q Consensus 761 ~~~~~~~~~~fl~ 773 (776)
...+...+.+||.
T Consensus 316 ~~~ia~~l~~~L~ 328 (329)
T 3tej_A 316 FEKIGPIIRATLN 328 (329)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 5666777777763
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-09 Score=116.89 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=86.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHH-HhCCcEEEEECCCCCC-CCchhhhhhhhhcc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGTA-RRGLKFEASIKHNC 614 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l-~~~G~~v~~~d~rg~g-~~~~~~~~~~~~~~ 614 (776)
+...+|.|... ...+++|+||++|||+........+... ......+ ...|++|+.+|||... ++.. .........
T Consensus 98 l~l~v~~P~~~-~~~~~~Pv~v~iHGGg~~~g~~~~~~~~-~l~~~~~~~~~~~vvv~~nYRl~~~gf~~-~~~~~~~~~ 174 (534)
T 1llf_A 98 LTINVVRPPGT-KAGANLPVMLWIFGGGFEIGSPTIFPPA-QMVTKSVLMGKPIIHVAVNYRVASWGFLA-GDDIKAEGS 174 (534)
T ss_dssp CEEEEEECTTC-CTTCCEEEEEEECCSTTTSCCGGGSCCH-HHHHHHHHTTCCCEEEEECCCCHHHHHCC-SHHHHHHTC
T ss_pred eEEEEEECCCC-CCCCCceEEEEEeCCCcccCCCcccCch-HHHHHHHhcCCCEEEEEeCCCCCCCCCCC-cccccccCC
Confidence 66778888753 1235789999999987543322222110 1111222 2469999999999531 0000 000011123
Q ss_pred CCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--------CCceEEEEEcCCC
Q 004067 615 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPV 672 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--------~~~~~~~v~~~~~ 672 (776)
+...+.|+..+++|+.++ ...|+++|.|+|+|+||++++.++... +.+|+++|+.+|.
T Consensus 175 ~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 175 GNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred CchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 344588999999999875 346999999999999999888777653 5578999998874
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=109.35 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCccc-------ccccccccchhhhHHHHhCCcE---EEEECCCCCCCCchhhhhhhhhccCCccHHHHH
Q 004067 554 YKTLISVYGGPCVQL-------VCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQL 623 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~-------~~~~~~~~~~~~~~~l~~~G~~---v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~ 623 (776)
.+.||++||..+... ....|......++..|.++||. |+++|++|+|.+..... ........+++.
T Consensus 40 ~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g~G~S~~~~~----~~~~~~~~~~l~ 115 (342)
T 2x5x_A 40 KTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSSEQGSAQY----NYHSSTKYAIIK 115 (342)
T ss_dssp SCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSCHHHHTCGGG----CCBCHHHHHHHH
T ss_pred CCeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCCCCccCCccc----cCCHHHHHHHHH
Confidence 345888999766432 0112210014568889999998 99999998875432110 001112366778
Q ss_pred HHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCC
Q 004067 624 TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 673 (776)
Q Consensus 624 ~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~ 673 (776)
+.++.++++. ..+++.|+||||||.++..++.++ |++++++|+++|..
T Consensus 116 ~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~ 165 (342)
T 2x5x_A 116 TFIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGI 165 (342)
T ss_dssp HHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCT
T ss_pred HHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCc
Confidence 8888777653 336899999999999999999988 88999999988754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-08 Score=100.75 Aligned_cols=272 Identities=10% Similarity=0.007 Sum_probs=147.2
Q ss_pred cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-----------CCcEEEEecCCCceeE-EeeCCCCCceec
Q 004067 149 GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-----------DCELHVLNLLINEQRQ-LTHGANGNTVTH 216 (776)
Q Consensus 149 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-----------~~~l~~~~l~~g~~~~-lt~~~~~~~~~~ 216 (776)
.|+++|.++++....+..+.. . .+.+||||+++.... ++.|.++|+.+++... +...+.. +...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~--P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~-~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL--S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP-RFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT--C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC-SCCB
T ss_pred eEEEEECCCCeEEEEEeCCCC--C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc-cccc
Confidence 789999999988755544432 3 699999999877664 2469999999987643 3222110 0000
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE--EEcCC
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV--VSAAG 294 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~--~d~~~ 294 (776)
+ .....+++||||++|+....... ..+.+ +|+.+
T Consensus 123 g----------~~P~~ia~SpDGk~lyVan~~~~----------------------------------~~v~V~~iD~~t 158 (368)
T 1mda_H 123 G----------PRVHIIGNCASSACLLFFLFGSS----------------------------------AAAGLSVPGASD 158 (368)
T ss_dssp S----------CCTTSEEECTTSSCEEEEECSSS----------------------------------CEEEEEETTTEE
T ss_pred C----------CCcceEEEcCCCCEEEEEccCCC----------------------------------CeEEEEEEchhh
Confidence 0 01346889999998876543211 23444 67666
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-----CceEEEEEeccCceeeccccc
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-----GQRKVILVEELDSWVNLHDCF 369 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-----g~~~~l~~~~~~~~~~~~~~~ 369 (776)
...+..+ .. ....|+|+..++.... +..+..+|+++ ++... ... ..+... -
T Consensus 159 --v~~i~v~--------~~-----~~~~p~g~~~~~~~~~---dg~~~~vd~~~~~~~~~~v~~--~~t-~~i~vg---~ 214 (368)
T 1mda_H 159 --DQLTKSA--------SC-----FHIHPGAAATHYLGSC---PASLAASDLAAAPAAAGIVGA--QCT-GAQNCS---S 214 (368)
T ss_dssp --EEEEECS--------SC-----CCCEEEETTEEECCCC---TTSCEEEECCSSCCCCEECCC--CSC-TTSCBC---S
T ss_pred --ceEEECC--------Cc-----eEEccCCCeEEEEEcC---CCCEEEEECccccccCCeEEE--Eee-eeeeCC---C
Confidence 4455331 11 1123444322222111 11123344443 22110 000 000000 0
Q ss_pred ccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec---ccc-------CCeEEEE--EEeecCCCcEEEEEEccC-C
Q 004067 370 TPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP---ITE-------GDWMVEQ--IVGVNEASGQVYFTGTLD-G 436 (776)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~---lt~-------~~~~~~~--~~~~s~dg~~i~~~~~~~-~ 436 (776)
.|. ...+++.++|.+. + .++.+|..++..+. +.. ..+.... ...+++||+++|+..... +
T Consensus 215 ~P~---~~~~~~~~~~vs~--~--~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~ 287 (368)
T 1mda_H 215 QAA---QANYPGMLVWAVA--S--SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287 (368)
T ss_dssp CCE---EETTTTEEEECBS--S--CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred Ccc---ccccCCEEEEEcC--C--EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccC
Confidence 011 0334566777776 4 79999987643221 211 1121111 134899999999875411 1
Q ss_pred C---ceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEee-CCCCCCEEEEEEcCCCceeEeec
Q 004067 437 P---LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHD-SLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 437 ~---~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
. ....+..+|+.+ ++ .+.++..+.....+.|+|||++++++.. .. ..|.++|+.+++.++.+.
T Consensus 288 ~~~~~~~~~~ViD~~t-~~----vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~---~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 288 SCLAAAENTSSVTASV-GQ----TSGPISNGHDSDAIIAAQDGASDNYANSAGT---EVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CTTSCEEEEEEEESSS-CC----EEECCEEEEEECEEEECCSSSCEEEEEETTT---TEEEEEESSSCEEEEECC
T ss_pred cccccCCCEEEEECCC-Ce----EEEEEECCCCcceEEECCCCCEEEEEccCCC---CeEEEEECCCCcEEEEEE
Confidence 0 001233777632 22 4555655445678899999999888877 33 369999999998776653
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.8e-09 Score=112.14 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=78.0
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHH-HHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQY-LRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~-l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
...|+||++||..++.. ..|.. .++.. ++..+|.|+++|+||+|.+... ..... . ....+++.+.++++.
T Consensus 67 ~~~p~vvliHG~~~s~~--~~w~~---~l~~~ll~~~~~~VI~vD~~g~g~s~y~--~~~~~-~-~~v~~~la~ll~~L~ 137 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKGE--ESWLS---TMCQNMFKVESVNCICVDWKSGSRTAYS--QASQN-V-RIVGAEVAYLVGVLQ 137 (449)
T ss_dssp TTSEEEEEECCCCCTTC--TTHHH---HHHHHHHHHCCEEEEEEECHHHHSSCHH--HHHHH-H-HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCC--ccHHH---HHHHHHHhcCCeEEEEEeCCcccCCccH--HHHHH-H-HHHHHHHHHHHHHHH
Confidence 34589999999765421 12321 13344 4567999999999999876521 11110 0 011346777777776
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
++..++.+++.|+||||||++|+.++.++|++++.++++.|..
T Consensus 138 ~~~g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 138 SSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp HHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred HhcCCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 4434467899999999999999999999999999999877654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.9e-07 Score=94.11 Aligned_cols=219 Identities=10% Similarity=-0.039 Sum_probs=130.3
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.|..++|+|||+ |++.... ...|+++|++++....+.... .... +.|+|
T Consensus 132 ~P~~la~d~~g~-lyv~d~~----~~~I~~id~~~g~~~~~~~~~------------------------~~~~-ia~~~- 180 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAYQRD----DPRVRLISVDDNKVTTVHPGF------------------------KGGK-PAVTK- 180 (409)
T ss_dssp CEEEEEECSTTE-EEEEETT----TTEEEEEETTTTEEEEEEETC------------------------CBCB-CEECT-
T ss_pred CceEEEEeCCCC-EEEEecC----CCcEEEEECCCCEEEEeeccC------------------------CCCc-eeEec-
Confidence 457889999998 6555442 257999999999887766421 1223 78999
Q ss_pred CCCceEEEEeCC-C--cEEEEeCCCCccceec---CCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeC
Q 004067 136 SSKKKIIMVPLP-D--GIYFQDLSCSKPELKL---SSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 136 ~~dg~~l~~~~~-~--~l~~~d~~~~~~~~~l---~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~ 208 (776)
+|+.|++... + .|++++..++.....+ ..........++++|++..|.+... +.|++++++++....+...
T Consensus 181 --~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~ 258 (409)
T 3hrp_A 181 --DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL 258 (409)
T ss_dssp --TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC
T ss_pred --CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc
Confidence 9998888733 3 7999999877653133 1212223677899996666666432 3599999998876555221
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
+.. +...+. ....++|+|+++.|++..... ..|+
T Consensus 259 ~~~-----g~~~~~------P~~~ia~~p~~g~lyv~d~~~-----------------------------------~~I~ 292 (409)
T 3hrp_A 259 ELS-----GSLGTN------PGPYLIYYFVDSNFYMSDQNL-----------------------------------SSVY 292 (409)
T ss_dssp CCC-----SCCCCS------SCCEEEEETTTTEEEEEETTT-----------------------------------TEEE
T ss_pred ccc-----CCCCCC------ccccEEEeCCCCEEEEEeCCC-----------------------------------CEEE
Confidence 110 000000 012788999877776653211 2466
Q ss_pred EEEcCCCceEEEEcccCCCC------CCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 289 VVSAAGGPVSWMDLQCGGTD------QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
+++.++......... +... ..........++++|||+ |+++ +.. ....|.++++.+|....+...
T Consensus 293 ~~~~~g~~~~~~g~~-~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyva-d~~-~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 293 KITPDGECEWFCGSA-TQKTVQDGLREEALFAQPNGMTVDEDGN-FYIV-DGF-KGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp EECTTCCEEEEEECT-TCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEE-ETT-TTCEEEEEETTTTEEEEEEEC
T ss_pred EEecCCCEEEEEeCC-CCCCcCCCcccccEeCCCeEEEEeCCCC-EEEE-eCC-CCCEEEEEECCCCEEEEEeCC
Confidence 666665422211110 0000 000123456799999998 4444 330 234699999888887766554
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.3e-09 Score=110.02 Aligned_cols=114 Identities=13% Similarity=0.008 Sum_probs=74.1
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh--hhccCC----ccHHHHHHHHH
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI--KHNCGR----IDAEDQLTGAE 627 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~--~~~~~~----~~~~D~~~~i~ 627 (776)
.| |+++|||.+.... .+. ............|+.|+++|+||+|.|...-.... ...++. ..++|+...++
T Consensus 39 ~P-i~l~~Ggeg~~~~--~~~-~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~ 114 (446)
T 3n2z_B 39 GS-ILFYTGNEGDIIW--FCN-NTGFMWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIK 114 (446)
T ss_dssp CE-EEEEECCSSCHHH--HHH-HCHHHHHHHHHHTEEEEEECCTTSTTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHHHH
T ss_pred CC-EEEEeCCCCcchh--hhh-cccHHHHHHHHhCCcEEEEecCCCCCCCCCCccccccchhhccCCHHHHHHHHHHHHH
Confidence 46 5666888776431 111 00112233345689999999999999853211100 011221 23667788888
Q ss_pred HHHHcC-CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCC
Q 004067 628 WLIKQG-LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP 671 (776)
Q Consensus 628 ~l~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~ 671 (776)
++.... .....+++++||||||++|++++.++|+++.++|+.++
T Consensus 115 ~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssa 159 (446)
T 3n2z_B 115 HLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159 (446)
T ss_dssp HHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEecc
Confidence 777642 22446899999999999999999999999999888654
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-09 Score=116.14 Aligned_cols=131 Identities=17% Similarity=0.275 Sum_probs=86.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCCCchhhhh--h-hhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEA--S-IKH 612 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~~~~~~~~--~-~~~ 612 (776)
+...+|.|... ...+++|+||++|||+........+.. .....+.++ ..|++|+.+|||... .| |.. . ...
T Consensus 106 l~l~v~~P~~~-~~~~~~Pviv~iHGGg~~~g~~~~~~~-~~l~~~~l~~~~~~vvv~~nYRl~~-~g--f~~~~~~~~~ 180 (544)
T 1thg_A 106 LYLNVFRPAGT-KPDAKLPVMVWIYGGAFVYGSSAAYPG-NSYVKESINMGQPVVFVSINYRTGP-FG--FLGGDAITAE 180 (544)
T ss_dssp CEEEEEEETTC-CTTCCEEEEEEECCCTTCCSGGGGCCS-HHHHHHHHHTTCCCEEEEECCCCHH-HH--HCCSHHHHHH
T ss_pred eEEEEEeCCCC-CCCCCCcEEEEECCCccccCCccccCc-hHHHHHHhhcCCCEEEEeCCCCCCc-cc--CCCccccccc
Confidence 56677888753 122578999999998754432222211 111122222 358999999999532 11 110 0 011
Q ss_pred ccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--------CCceEEEEEcCCC
Q 004067 613 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPV 672 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--------~~~~~~~v~~~~~ 672 (776)
..+...+.|+..+++|+.++ ...|+++|.|+|+|+||++++.++... ..+|+++|+.+|.
T Consensus 181 ~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~ 251 (544)
T 1thg_A 181 GNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp TCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEeccc
Confidence 23344588999999999885 346999999999999999998877752 4578999998874
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-07 Score=89.51 Aligned_cols=236 Identities=11% Similarity=0.047 Sum_probs=141.8
Q ss_pred CCEEEEEeCCCCcCcceEEEEecCCCceE-----EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 66 DNLITYLLSPDHSLSRKVFSFDPKTCKQE-----LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 66 G~~ia~~~~~~~~~~~~l~~~~~~~~~~~-----~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
|+.|.|... ..|++++++++..+ .+...+ ......+.|++ +++
T Consensus 1 ~~~l~~~~~------~~I~~~~~~g~~~~~~~~~~~~~~~-----------------------~~~~~gi~~d~---~~~ 48 (267)
T 1npe_A 1 GTHLLFAQT------GKIERLPLERNTMKKTEAKAFLHIP-----------------------AKVIIGLAFDC---VDK 48 (267)
T ss_dssp CEEEEEEEE------EEEEEEEESSSCBCGGGCEEEEEEE-----------------------EEEEEEEEEET---TTT
T ss_pred CcEEEEEcC------CeEEEEEecCcccccccceeeecCC-----------------------CCcEEEEEEec---CCC
Confidence 556777643 35999999887642 111100 12356788999 999
Q ss_pred EEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceec
Q 004067 141 IIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 141 ~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
.|+++ ..+.|++++++++... .+..........++++|++..|.+... +.|+++++++...+.+...+.
T Consensus 49 ~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~------ 121 (267)
T 1npe_A 49 VVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL------ 121 (267)
T ss_dssp EEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC------
T ss_pred EEEEEECCCCEEEEEecCCCCcE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC------
Confidence 99987 4568999999988765 433222123567889999888766654 469999988665554432221
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 296 (776)
....+++++|+++.|++...... ...|+++++++..
T Consensus 122 -----------~~P~~i~vd~~~g~lyv~~~~~~---------------------------------~~~I~~~~~dg~~ 157 (267)
T 1npe_A 122 -----------VNPRGIVTDPVRGNLYWTDWNRD---------------------------------NPKIETSHMDGTN 157 (267)
T ss_dssp -----------SSEEEEEEETTTTEEEEEECCSS---------------------------------SCEEEEEETTSCC
T ss_pred -----------CCccEEEEeeCCCEEEEEECCCC---------------------------------CcEEEEEecCCCC
Confidence 11347889999888877542110 1346777877655
Q ss_pred eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCc
Q 004067 297 VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGV 376 (776)
Q Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 376 (776)
...+.. ........++++||++.|+++.. . ...|+++|++++..+.+... .. .| .++
T Consensus 158 ~~~~~~--------~~~~~P~gia~d~~~~~lyv~d~-~--~~~I~~~~~~g~~~~~~~~~--~~--------~P--~gi 214 (267)
T 1npe_A 158 RRILAQ--------DNLGLPNGLTFDAFSSQLCWVDA-G--THRAECLNPAQPGRRKVLEG--LQ--------YP--FAV 214 (267)
T ss_dssp CEEEEC--------TTCSCEEEEEEETTTTEEEEEET-T--TTEEEEEETTEEEEEEEEEC--CC--------SE--EEE
T ss_pred cEEEEE--------CCCCCCcEEEEcCCCCEEEEEEC-C--CCEEEEEecCCCceEEEecC--CC--------Cc--eEE
Confidence 444421 12234567899999877766643 2 34699999987655444321 10 01 122
Q ss_pred cccCCeEEEEeccCCceEEEEEeCCCce-eeccc
Q 004067 377 TKYSGGFIWASEKTGFRHLYLHDINGTC-LGPIT 409 (776)
Q Consensus 377 ~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt 409 (776)
+.+++.+|++....+ .|++++.++++ ...+.
T Consensus 215 ~~d~~~lyva~~~~~--~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 215 TSYGKNLYYTDWKTN--SVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEETTEEEEEETTTT--EEEEEETTTTEEEEEEC
T ss_pred EEeCCEEEEEECCCC--eEEEEeCCCCCceEEEc
Confidence 334444554443344 78888887554 34443
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.9e-09 Score=110.69 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
..|+||++||..++.. ..|. ..++..+. ..+|.|+++|+||+|.+... ..... .....+++.+.++++.+
T Consensus 69 ~~p~vvliHG~~~s~~--~~w~---~~l~~~ll~~~~~~VI~vD~~g~g~s~y~--~~~~~--~~~~a~~l~~ll~~L~~ 139 (450)
T 1rp1_A 69 DKKTRFIIHGFIDKGE--ENWL---LDMCKNMFKVEEVNCICVDWKKGSQTSYT--QAANN--VRVVGAQVAQMLSMLSA 139 (450)
T ss_dssp TSEEEEEECCCCCTTC--TTHH---HHHHHHHTTTCCEEEEEEECHHHHSSCHH--HHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEccCCCCCC--cchH---HHHHHHHHhcCCeEEEEEeCccccCCcch--HHHHH--HHHHHHHHHHHHHHHHH
Confidence 4589999999765431 1231 11234444 45899999999998765421 11110 00124567777777764
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
+..++.+++.|+||||||++|+.++.++|+ +..++++.|..
T Consensus 140 ~~g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 140 NYSYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp HHCCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred hcCCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 433467899999999999999999999999 89998877654
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=112.60 Aligned_cols=126 Identities=18% Similarity=0.233 Sum_probs=85.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCC----CCCchhhhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGT----ARRGLKFEASIK 611 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~----g~~~~~~~~~~~ 611 (776)
+...+|.|... ..+++|+||++|||+......... ......|++ .|++|+.+|||.. +.... ..
T Consensus 97 l~l~v~~P~~~--~~~~~Pviv~iHGGg~~~g~~~~~----~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~~-----~~ 165 (543)
T 2ha2_A 97 LYLNVWTPYPR--PASPTPVLIWIYGGGFYSGAASLD----VYDGRFLAQVEGAVLVSMNYRVGTFGFLALPG-----SR 165 (543)
T ss_dssp CEEEEEEESSC--CSSCEEEEEEECCSTTTCCCTTSG----GGCTHHHHHHHCCEEEEECCCCHHHHHCCCTT-----CS
T ss_pred CeEEEeecCCC--CCCCCeEEEEECCCccccCCCCCC----cCChHHHHhcCCEEEEEecccccccccccCCC-----CC
Confidence 55566778652 225789999999986433211110 112345654 7999999999932 11100 00
Q ss_pred hccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCC
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 673 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~ 673 (776)
...+...+.|+..+++|+.++ ...|+++|.|+|+|+||++++.++... +.+|+++|+.+|..
T Consensus 166 ~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 166 EAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 112233488999999999885 346999999999999999998887753 46899999988853
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=9.7e-07 Score=88.95 Aligned_cols=210 Identities=10% Similarity=0.038 Sum_probs=120.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe-ec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV-KT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s-p~ 135 (776)
|..++++|||+ |+..... ...|+++++++...+.+..... .. ..........++ +
T Consensus 32 p~~v~~~~~g~-l~v~~~~----~~~i~~~d~~g~~~~~~~~~~~---------~~---------~~~~~p~~i~~~~~- 87 (286)
T 1q7f_A 32 PSGVAVNAQND-IIVADTN----NHRIQIFDKEGRFKFQFGECGK---------RD---------SQLLYPNRVAVVRN- 87 (286)
T ss_dssp EEEEEECTTCC-EEEEEGG----GTEEEEECTTSCEEEEECCBSS---------ST---------TCBSSEEEEEEETT-
T ss_pred CceEEECCCCC-EEEEECC----CCEEEEECCCCcEEEEecccCC---------Cc---------ccccCceEEEEEcC-
Confidence 57889999998 3333222 2469999998654444432100 00 001235567784 6
Q ss_pred CCCceEEEEeC--CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCC
Q 004067 136 SSKKKIIMVPL--PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 136 ~~dg~~l~~~~--~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
+|+.++... ++.|+++|.++.... .+..........+.++|||+ |.+.. ++.|++++.++.....+.....
T Consensus 88 --~g~l~v~~~~~~~~i~~~d~~g~~~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~- 162 (286)
T 1q7f_A 88 --SGDIIVTERSPTHQIQIYNQYGQFVR-KFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNVLHKFGCSKH- 162 (286)
T ss_dssp --TTEEEEEECGGGCEEEEECTTSCEEE-EECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEEECTTT-
T ss_pred --CCeEEEEcCCCCCEEEEECCCCcEEE-EecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCEEEEeCCCCc-
Confidence 666544443 678999996655444 44332222356789999997 33333 2469999976554444432111
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
.....+++++|||+ |++..... ..|++||
T Consensus 163 ---------------~~~p~~i~~~~~g~-l~v~~~~~-----------------------------------~~i~~~~ 191 (286)
T 1q7f_A 163 ---------------LEFPNGVVVNDKQE-IFISDNRA-----------------------------------HCVKVFN 191 (286)
T ss_dssp ---------------CSSEEEEEECSSSE-EEEEEGGG-----------------------------------TEEEEEE
T ss_pred ---------------cCCcEEEEECCCCC-EEEEECCC-----------------------------------CEEEEEc
Confidence 01134788999987 44433211 3578889
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
.++.....+.. .........++++|||++++... . ....|.+||.++...+.+..
T Consensus 192 ~~g~~~~~~~~-------~g~~~~p~~i~~d~~G~l~v~~~--~-~~~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 192 YEGQYLRQIGG-------EGITNYPIGVGINSNGEILIADN--H-NNFNLTIFTQDGQLISALES 246 (286)
T ss_dssp TTCCEEEEESC-------TTTSCSEEEEEECTTCCEEEEEC--S-SSCEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEEcc-------CCccCCCcEEEECCCCCEEEEeC--C-CCEEEEEECCCCCEEEEEcc
Confidence 87665555522 11124567899999997443321 1 11269999976655555543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.80 E-value=9.3e-07 Score=88.96 Aligned_cols=281 Identities=10% Similarity=0.012 Sum_probs=138.9
Q ss_pred eeeEEEeecCCCce--EEEEeCCCcEEEEeCCCC---ccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc
Q 004067 127 VTRYEWVKTSSKKK--IIMVPLPDGIYFQDLSCS---KPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE 201 (776)
Q Consensus 127 ~~~~~~sp~~~dg~--~l~~~~~~~l~~~d~~~~---~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~ 201 (776)
+....|-. ++.+ .|+.+-...|-+|+...+ +....++..+ ..+..+.++||-..|+-+.-++|-. +.
T Consensus 42 ~~~~~~~~--~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~-----~~ 113 (356)
T 2w18_A 42 VSAMFWER--AGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAE-VPVLQIVPVPDVYNLVCVALGNLEI-----RE 113 (356)
T ss_dssp EEEEEEC------CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCS-SCEEEECCCTTCCSCEEEEECSSSE-----EE
T ss_pred Eeeeeecc--CCCCccEEEEeccceEEEcccCCCccceeeEEEeccC-ceeEEEEEcCcccceeeeeeccccc-----cc
Confidence 45666754 1333 455566778999998887 3332444443 3478899999999888887553321 22
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCC----CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD----SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (776)
+ +++++||| ++.++....+ ...+.++ ... .... ..
T Consensus 114 v----------------------------~sla~spd~~~~~~~l~s~g~~---~~v~~l~--~g~-----lv~s---s~ 152 (356)
T 2w18_A 114 I----------------------------RALFCSSDDESEKQVLLKSGNI---KAVLGLT--KRR-----LVSS---SG 152 (356)
T ss_dssp E----------------------------EEECC------CCEEEEEEEEE---EEEEEET--TTE-----EEEE---ES
T ss_pred e----------------------------EEEEECCCccccccEEEeCCCe---EEEEecC--CCc-----EEEe---cc
Confidence 2 24456666 6665553321 0011110 000 0000 00
Q ss_pred CCCCCCeEEEEEEEcC-CCceE-EEEcccCCCCCCCCcceEEEEEecc---CCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 278 AGASNVKVRLGVVSAA-GGPVS-WMDLQCGGTDQNYDEEYLARVNWMH---GNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~-~~~~~-~l~~~~~~~~~~~~~~~~~~~~~Sp---Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
......|.+|++. +|+.. .+ ..+...+..++||| |++.|+..+ .+..|.+||+++|+..
T Consensus 153 ---~g~d~~V~~~~~s~dG~~~~s~---------~~~~~~v~~l~fs~~~g~~~~LaSgS----~D~TIkIWDl~TGk~l 216 (356)
T 2w18_A 153 ---TLSDQQVEVMTFAEDGGGKENQ---------FLMPPEETILTFAEVQGMQEALLGTT----IMNNIVIWNLKTGQLL 216 (356)
T ss_dssp ---SSTTCEEEEEEECTTSCEEEEE---------EECCCSSCEEEEEEEETSTTEEEEEE----TTSEEEEEETTTCCEE
T ss_pred ---cCCCCcEEEEEECCCCceeeee---------ccCCCceeeEEeeccCCCCceEEEec----CCCcEEEEECCCCcEE
Confidence 0001356777773 34432 22 12333444567777 556777665 5667999999999864
Q ss_pred EEEE-eccCceeecccccccCCCCccccCCeEEEE----------eccCCceEEEEEeCCCceeeccc-----cC-CeEE
Q 004067 353 VILV-EELDSWVNLHDCFTPLDKGVTKYSGGFIWA----------SEKTGFRHLYLHDINGTCLGPIT-----EG-DWMV 415 (776)
Q Consensus 353 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------s~~~g~~~l~~~~~~g~~~~~lt-----~~-~~~~ 415 (776)
.... +.........-.|+|. +.++.+ ........|.+|++.+++...+. .+ ...
T Consensus 217 ~tL~g~~~~v~~v~~vafSpd--------G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~- 287 (356)
T 2w18_A 217 KKMHIDDSYQASVCHKAYSEM--------GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR- 287 (356)
T ss_dssp EEEECCC---CCCEEEEEEET--------TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC-
T ss_pred EEEcCCCcceeeeEEEEECCC--------CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce-
Confidence 4333 2211111101124442 222211 11222358888998888643221 11 111
Q ss_pred EEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeE-EEEEcCCcCEEEEEeeCCCCCCEEE
Q 004067 416 EQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKH-VAVLDHNMRNFVDFHDSLDSPPRIL 493 (776)
Q Consensus 416 ~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~-~~~~spdg~~l~~~~~~~~~~~~i~ 493 (776)
+...+.++. +++....++. ++||.+. .|. .+..|+.+. .+. .++|||||++|+..+. + ..|+
T Consensus 288 --~lsg~~sg~-~lASgS~DgT--IkIWDl~---tGk----~l~tL~gH~~~vvs~vafSPDG~~LaSGS~-D---~TIk 351 (356)
T 2w18_A 288 --FLEGDVKDH-CAAAILTSGT--IAIWDLL---LGQ----CTALLPPVSDQHWSFVKWSGTDSHLLAGQK-D---GNIF 351 (356)
T ss_dssp --EEEEEEETT-EEEEEETTSC--EEEEETT---TCS----EEEEECCC--CCCCEEEECSSSSEEEEECT-T---SCEE
T ss_pred --eEccccCCC-EEEEEcCCCc--EEEEECC---CCc----EEEEecCCCCCeEEEEEECCCCCEEEEEEC-C---CcEE
Confidence 111222234 3444444544 7888876 343 556676543 233 5799999998886542 2 2478
Q ss_pred EEEc
Q 004067 494 LCSL 497 (776)
Q Consensus 494 ~~~~ 497 (776)
+||.
T Consensus 352 lWd~ 355 (356)
T 2w18_A 352 VYHY 355 (356)
T ss_dssp EEEE
T ss_pred EecC
Confidence 7774
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-06 Score=87.99 Aligned_cols=220 Identities=7% Similarity=0.028 Sum_probs=125.6
Q ss_pred CCceeEcCCCCEEEEEeCCCC-------------------cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHH
Q 004067 57 PTSIGFSPDDNLITYLLSPDH-------------------SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRR 117 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~-------------------~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 117 (776)
+..++++|||+.++-.+.... .....|+++|.++|+.........
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---------------- 89 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL---------------- 89 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT----------------
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc----------------
Confidence 478999999986654332210 001369999999888755442100
Q ss_pred HHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCc--cceecCC--------CCCCCccCceeCC-CCCEE
Q 004067 118 ERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSK--PELKLSS--------SSCSPVIDPHLSS-DGTMI 184 (776)
Q Consensus 118 ~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~--~~~~l~~--------~~~~~~~~~~~Sp-Dg~~l 184 (776)
........++| ||+ |+++ .+..|+++|.++.. .. .+.. ........++++| +|+.+
T Consensus 90 ------~~~p~gia~d~---~g~-l~v~d~~~~~v~~~~~~g~~~~~~-~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly 158 (329)
T 3fvz_A 90 ------FYLPHGLSIDT---DGN-YWVTDVALHQVFKLDPHSKEGPLL-ILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF 158 (329)
T ss_dssp ------CSSEEEEEECT---TSC-EEEEETTTTEEEEECTTCSSCCSE-EESBTTBCCCSTTCCSSEEEEEECTTTCCEE
T ss_pred ------cCCceEEEECC---CCC-EEEEECCCCEEEEEeCCCCeEEEE-EecccCCCCCCccccCCCcEEEEeCCCCeEE
Confidence 12456788999 999 5554 45779999998763 22 3321 1111245689999 56544
Q ss_pred EEEE--CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCC
Q 004067 185 AFVR--DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGK 262 (776)
Q Consensus 185 a~~~--~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 262 (776)
+.-. ++.|++++.++.....+...+.... ....++....+++++||+..|+......
T Consensus 159 v~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~--------~~~~~~~~p~gia~d~~~g~l~v~d~~~------------- 217 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSPSGKFVTQWGEESSGSS--------PRPGQFSVPHSLALVPHLDQLCVADREN------------- 217 (329)
T ss_dssp EEECSSCCEEEEECTTSCEEEEECEECCSSS--------CCTTEESCEEEEEEETTTTEEEEEETTT-------------
T ss_pred EEeCCCCCeEEEEcCCCCEEEEeccCCCCCC--------CCCcccCCCcEEEEECCCCEEEEEECCC-------------
Confidence 4332 3469999965544444432221100 0001122245788999977776543211
Q ss_pred CCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEee----cCc
Q 004067 263 SSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR----SQT 337 (776)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~----~~~ 337 (776)
..|.+|+.++|+.. .+.. .........+.|+| |. ++..... +..
T Consensus 218 ----------------------~~I~~~~~~~G~~~~~~~~-------~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~ 266 (329)
T 3fvz_A 218 ----------------------GRIQCFKTDTKEFVREIKH-------ASFGRNVFAISYIP-GF-LFAVNGKPYFGDQE 266 (329)
T ss_dssp ----------------------TEEEEEETTTCCEEEEECC-------TTTTTCEEEEEEET-TE-EEEEECCCCTTCSC
T ss_pred ----------------------CEEEEEECCCCcEEEEEec-------cccCCCcceeeecC-CE-EEEeCCCEEeccCC
Confidence 35789999866644 3322 22334566889999 53 3222211 112
Q ss_pred eEEEEEEECCCCceEEEE
Q 004067 338 KLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 338 ~~~l~~~d~~~g~~~~l~ 355 (776)
...|++||+.+|+.....
T Consensus 267 ~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 267 PVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp CCCEEEEETTTCCEEEEE
T ss_pred CcEEEEEEcCCCeEEEEE
Confidence 347999999888765543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-05 Score=86.61 Aligned_cols=141 Identities=11% Similarity=-0.007 Sum_probs=98.2
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|++++++|+|..... ..|++++++++..+.+..... ......++.+
T Consensus 39 ~~~l~~d~~~~~lywtD~~~----~~I~r~~~~g~~~~~v~~~g~-----------------------~~P~GlAvD~-- 89 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISL----KTISRAFMNGSALEHVVEFGL-----------------------DYPEGMAVDW-- 89 (628)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEECSSC-----------------------SCCCEEEEET--
T ss_pred eEEEEEECCCCEEEEEECCC----CeEEEEECCCCCcEEEEeCCC-----------------------CCcceEEEEe--
Confidence 47889999999999887644 479999999887766664211 1234567777
Q ss_pred CCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE---CCcEEEEecCCCceeEEeeCCCC
Q 004067 137 SKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR---DCELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 137 ~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~---~~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
.++.|+++ ..+.|.+.+++|+..+ .+..........+++.|....|.++. ...|++.++++...+.+.....
T Consensus 90 -~~~~LY~tD~~~~~I~v~~~dG~~~~-~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~- 166 (628)
T 4a0p_A 90 -LGKNLYWADTGTNRIEVSKLDGQHRQ-VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVG- 166 (628)
T ss_dssp -TTTEEEEEETTTTEEEEEETTSTTCE-EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCS-
T ss_pred -CCCEEEEEECCCCEEEEEecCCCcEE-EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCC-
Confidence 78888887 3467999999988766 44322222356788898777776665 3479999999887776653211
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
...++++++++++|++..
T Consensus 167 -----------------~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 167 -----------------RANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp -----------------SEEEEEEETTTTEEEEEE
T ss_pred -----------------CcceEEEccccCEEEEEE
Confidence 133677888888776654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-06 Score=89.10 Aligned_cols=210 Identities=10% Similarity=0.049 Sum_probs=121.1
Q ss_pred CCCceeEcCCCCEEEEEeCC---CCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 56 APTSIGFSPDDNLITYLLSP---DHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
.+..++|+|||+ |++.+.. .+.....|+++++.+++.+.+..... . .....+....+
T Consensus 19 ~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--------~-----------~~~~~~~~i~~ 78 (314)
T 1pjx_A 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV--------N-----------GYGGIPAGCQC 78 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE--------T-----------TEECCEEEEEE
T ss_pred CccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc--------C-----------CCCCCCceEEE
Confidence 358999999996 5444100 01112469999998888766542000 0 00134677889
Q ss_pred eecCCC-ceEEEEeCCCcEEEEeCCCCccceec-CCCC----CCCccCceeCCCCCEEEEEEC----------------C
Q 004067 133 VKTSSK-KKIIMVPLPDGIYFQDLSCSKPELKL-SSSS----CSPVIDPHLSSDGTMIAFVRD----------------C 190 (776)
Q Consensus 133 sp~~~d-g~~l~~~~~~~l~~~d~~~~~~~~~l-~~~~----~~~~~~~~~SpDg~~la~~~~----------------~ 190 (776)
++ | |+.++......|+++|.+ ++.+ .+ .... ...+..+.++|||+..+-... .
T Consensus 79 ~~---~~g~l~v~~~~~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 79 DR---DANQLFVADMRLGLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp CS---SSSEEEEEETTTEEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred ec---CCCcEEEEECCCCEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence 99 9 765554555689999999 6655 44 2211 112567889999975433322 3
Q ss_pred cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEEC----CCCCeEEEEEecCCCCCeEEEeecCCCCCC
Q 004067 191 ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWS----LDSKFIAFTQVDSSEIPRFRIMHQGKSSVG 266 (776)
Q Consensus 191 ~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws----pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (776)
.|+.++.+ ++.+.+..... ....++|+ |||+.|++.....
T Consensus 154 ~l~~~~~~-g~~~~~~~~~~------------------~~~~i~~~~~~d~dg~~l~v~~~~~----------------- 197 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVDTAFQ------------------FPNGIAVRHMNDGRPYQLIVAETPT----------------- 197 (314)
T ss_dssp EEEEECTT-SCEEEEEEEES------------------SEEEEEEEECTTSCEEEEEEEETTT-----------------
T ss_pred eEEEECCC-CCEEEeccCCC------------------CcceEEEecccCCCCCEEEEEECCC-----------------
Confidence 58888877 66554432111 12367899 9998776654211
Q ss_pred CCCcceecCCCCCCCCCeEEEEEEEcC-CCceEEEEcccCCCCCCCCc-ceEEEEEeccCCeEEEEEEeecCceEEEEEE
Q 004067 267 SEAQEDHAYPFAGASNVKVRLGVVSAA-GGPVSWMDLQCGGTDQNYDE-EYLARVNWMHGNILTAQVLNRSQTKLKVLKF 344 (776)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 344 (776)
..|++|+.+ +++......-.. ..... .....+++++||++++... ....|++|
T Consensus 198 ------------------~~i~~~~~~~~g~~~~~~~~~~---~~~~~~~~p~~i~~d~~G~l~v~~~----~~~~i~~~ 252 (314)
T 1pjx_A 198 ------------------KKLWSYDIKGPAKIENKKVWGH---IPGTHEGGADGMDFDEDNNLLVANW----GSSHIEVF 252 (314)
T ss_dssp ------------------TEEEEEEEEETTEEEEEEEEEE---CCCCSSCEEEEEEEBTTCCEEEEEE----TTTEEEEE
T ss_pred ------------------CeEEEEECCCCCccccceEEEE---CCCCCCCCCCceEECCCCCEEEEEc----CCCEEEEE
Confidence 246777765 444221110000 01122 4567799999997443322 22369999
Q ss_pred ECCCCce
Q 004067 345 DIKTGQR 351 (776)
Q Consensus 345 d~~~g~~ 351 (776)
|+++|+.
T Consensus 253 d~~~g~~ 259 (314)
T 1pjx_A 253 GPDGGQP 259 (314)
T ss_dssp CTTCBSC
T ss_pred cCCCCcE
Confidence 9986654
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.4e-09 Score=110.77 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCc---EEEEECCCCCCCC-----c-----hhhhhh----------
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI---LVWKLDNRGTARR-----G-----LKFEAS---------- 609 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~---~v~~~d~rg~g~~-----~-----~~~~~~---------- 609 (776)
+.|+||++||..++.. .|..++..|+++|| .|+++|++|+|.+ . ......
T Consensus 21 ~~ppVVLlHG~g~s~~-------~w~~la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~ 93 (484)
T 2zyr_A 21 DFRPVVFVHGLAGSAG-------QFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPE 93 (484)
T ss_dssp CCCCEEEECCTTCCGG-------GGHHHHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHH
T ss_pred CCCEEEEECCCCCCHH-------HHHHHHHHHHHcCCCcceEEEEECCCCCccccccccccccccccccccccccccccc
Confidence 4578999999876543 34556888999999 7999999998854 0 000000
Q ss_pred ----hh----hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEcCCCCC
Q 004067 610 ----IK----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTS 674 (776)
Q Consensus 610 ----~~----~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~~~~~~ 674 (776)
.. ........+++.+.++.++++. ..+++.++||||||.+++.++.++| +.++++|+++|...
T Consensus 94 ~l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 94 TLDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred cccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 00 0000123567777777777653 3368999999999999999999987 47899999887654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=5.4e-07 Score=96.73 Aligned_cols=166 Identities=13% Similarity=0.039 Sum_probs=105.8
Q ss_pred CeeeEEEeecCCCceEEEE---e--CCCcEEEEeCCCC-----cc---c--eecCCCCCCCccCceeCCC-CCEEEEEEC
Q 004067 126 GVTRYEWVKTSSKKKIIMV---P--LPDGIYFQDLSCS-----KP---E--LKLSSSSCSPVIDPHLSSD-GTMIAFVRD 189 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~---~--~~~~l~~~d~~~~-----~~---~--~~l~~~~~~~~~~~~~SpD-g~~la~~~~ 189 (776)
.+....|+| ||++|++ + .++.|.+||+.++ +. . ..+..+....+..++|+|+ ++.|+..+.
T Consensus 94 ~v~~l~~sp---dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 94 PIHHLALSC---DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CEEEEEECT---TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred cccEEEEcC---CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 588999999 9999995 3 4678999998764 11 0 0111112234788999998 777776664
Q ss_pred -CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 190 -CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 190 -~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
+.|.+||+.++.......... ..+..++|||||+.|+....+
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~-----------------~~v~~v~wspdg~~lasgs~d-------------------- 213 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPST-----------------VAVTSVCWSPKGKQLAVGKQN-------------------- 213 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGG-----------------GCEEEEEECTTSSCEEEEETT--------------------
T ss_pred CCeEEEEEcCCCcceeeccCCC-----------------CceeEEEEcCCCCEEEEEcCC--------------------
Confidence 579999999885432222111 114578999999999877643
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeec---CceEEEEEEE
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS---QTKLKVLKFD 345 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~~l~~~d 345 (776)
..|.+||..+.....+..... ....+...+..+.|++++.+++...+.. .....++.|+
T Consensus 214 ----------------g~v~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 214 ----------------GTVVQYLPTLQEKKVIPCPPF--YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp ----------------SCEEEECTTCCEEEEECCCTT--CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred ----------------CcEEEEccCCcccccccCCcc--cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 237889988433334422100 0012234789999999998665554332 2234588888
Q ss_pred CCCC
Q 004067 346 IKTG 349 (776)
Q Consensus 346 ~~~g 349 (776)
+...
T Consensus 276 l~~~ 279 (434)
T 2oit_A 276 LPKK 279 (434)
T ss_dssp CCCT
T ss_pred eccC
Confidence 8654
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=110.53 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=86.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCC----CCCchhhhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGT----ARRGLKFEASIK 611 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~----g~~~~~~~~~~~ 611 (776)
+...+|.|.... +++|+||++|||+......... ......|++ .|++|+.++||.. ..... ..
T Consensus 93 l~lnv~~P~~~~---~~~Pv~v~iHGGg~~~g~~~~~----~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~-----~~ 160 (529)
T 1p0i_A 93 LYLNVWIPAPKP---KNATVLIWIYGGGFQTGTSSLH----VYDGKFLARVERVIVVSMNYRVGALGFLALPG-----NP 160 (529)
T ss_dssp CEEEEEEESSCC---SSEEEEEEECCSTTTSCCTTCG----GGCTHHHHHHHCCEEEEECCCCHHHHHCCCTT-----CT
T ss_pred CeEEEeeCCCCC---CCCeEEEEECCCccccCCCCcc----ccChHHHhccCCeEEEEecccccccccccCCC-----CC
Confidence 556777886532 5789999999986433211110 112455665 7999999999932 11100 00
Q ss_pred hccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCC
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 673 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~ 673 (776)
...+...+.|+..+++|+.++ ...|+++|.|+|+|+||.+++.++... ..+|+++|+.+|..
T Consensus 161 ~~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 227 (529)
T 1p0i_A 161 EAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 227 (529)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred CCcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCcc
Confidence 112233488999999999875 346999999999999999999988753 45799999998864
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.6e-09 Score=113.01 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=84.9
Q ss_pred EEEEEEcC-----CCCCCCCCC----ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC----CCCc
Q 004067 537 LYGALYKP-----DESRYGPPP----YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT----ARRG 603 (776)
Q Consensus 537 l~~~~~~P-----~~~~~~~~~----~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~----g~~~ 603 (776)
+...+|.| ... ..++ +|+||++|||+......... ......|++.|++|+++|||.. ....
T Consensus 91 L~lnv~~P~~~~~~~~--~~~~~~~~~Pviv~iHGGg~~~g~~~~~----~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~~ 164 (551)
T 2fj0_A 91 IHANIHVPYYALPRDA--ADKNRFAGLPVLVFIHGGGFAFGSGDSD----LHGPEYLVSKDVIVITFNYRLNVYGFLSLN 164 (551)
T ss_dssp CEEEEEEEGGGCCCC----------CEEEEEEECCSTTTSCCSCTT----TCBCTTGGGGSCEEEEECCCCHHHHHCCCS
T ss_pred eEEEEEecCccccccc--cccCcCCCCCEEEEEcCCccccCCCccc----ccCHHHHHhCCeEEEEeCCcCCccccccCc
Confidence 66777788 331 1133 89999999976433211110 1124567789999999999942 1111
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCC
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPV 672 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~ 672 (776)
. ....+...+.|+..+++|+.++ ...|+++|.|+|+|+||.+++.++.. .+.+|+++|+.+|.
T Consensus 165 ~------~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 232 (551)
T 2fj0_A 165 S------TSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGT 232 (551)
T ss_dssp S------SSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCC
T ss_pred c------cCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCC
Confidence 0 0112234588999999999886 34689999999999999999998875 35689999998885
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=110.41 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=86.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCC----CCC-chhhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGT----ARR-GLKFEASI 610 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~----g~~-~~~~~~~~ 610 (776)
+...+|.|.... +++|+||++|||+......... ......|+ +.|++|+.++||.. ... +.
T Consensus 95 l~lnv~~P~~~~---~~~Pv~v~iHGG~~~~g~~~~~----~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~------ 161 (537)
T 1ea5_A 95 LYLNIWVPSPRP---KSTTVMVWIYGGGFYSGSSTLD----VYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGS------ 161 (537)
T ss_dssp CEEEEEECSSCC---SSEEEEEEECCSTTTCCCTTCG----GGCTHHHHHHHTCEEEECCCCCHHHHHCCCTTC------
T ss_pred CeEEEeccCCCC---CCCeEEEEECCCcccCCCCCCC----ccChHHHHhcCCEEEEEeccCccccccccCCCC------
Confidence 556777886531 5789999999976543211110 11234565 78999999999932 111 10
Q ss_pred hhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCC
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVT 673 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~ 673 (776)
....+...+.|+..+++|+.++ ...|+++|.|+|+|.||.+++.++.. ...+|+++|+.+|..
T Consensus 162 ~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 229 (537)
T 1ea5_A 162 QEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 229 (537)
T ss_dssp SSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred CCCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCc
Confidence 0112233488999999999886 34699999999999999999988875 245799999998864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-06 Score=88.42 Aligned_cols=256 Identities=10% Similarity=0.046 Sum_probs=141.0
Q ss_pred CeeeEEEeecCCCceEEEE--------eCCCcEEEEeCCCCccceecCCC----CCCCccCceeCCC-CCEEEEEE-CCc
Q 004067 126 GVTRYEWVKTSSKKKIIMV--------PLPDGIYFQDLSCSKPELKLSSS----SCSPVIDPHLSSD-GTMIAFVR-DCE 191 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~--------~~~~~l~~~d~~~~~~~~~l~~~----~~~~~~~~~~SpD-g~~la~~~-~~~ 191 (776)
....+.|++ ||+.++. ..++.|+++|..+++.+ .+... ....+..+.++|| |+ |.+.. .+.
T Consensus 19 ~~~~~~~~~---~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~ 93 (314)
T 1pjx_A 19 GAEGPVFDK---NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLG 93 (314)
T ss_dssp TCEEEEECT---TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSE-EEEEETTTE
T ss_pred CccCceECC---CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCc-EEEEECCCC
Confidence 356788999 9976655 35678999999888776 44320 1123567889999 65 44443 457
Q ss_pred EEEEecCCCceeEE-eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 192 LHVLNLLINEQRQL-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 192 l~~~~l~~g~~~~l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
|++++.+ |+.+.+ ...... . .......++++|||+ |++..........
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~------~-------~~~~~~~i~~d~~g~-l~v~~~~~~~~~~---------------- 142 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEG------R-------RMQGCNDCAFDYEGN-LWITAPAGEVAPA---------------- 142 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTS------C-------BCBCCCEEEECTTSC-EEEEECBCBCTTS----------------
T ss_pred EEEEeCC-CCEEEEEeccCCC------c-------cccCCcCEEECCCCC-EEEEecCcccccc----------------
Confidence 9999998 776655 322110 0 011145788999996 5444422110000
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec----cCCeEEEEEEeecCceEEEEEEEC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM----HGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S----pDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
++. .........|+.++.+ ++...+.. .......++|+ |||+.+++.... ...|++||+
T Consensus 143 -~~~---~~~~~~~~~l~~~~~~-g~~~~~~~---------~~~~~~~i~~~~~~d~dg~~l~v~~~~---~~~i~~~~~ 205 (314)
T 1pjx_A 143 -DYT---RSMQEKFGSIYCFTTD-GQMIQVDT---------AFQFPNGIAVRHMNDGRPYQLIVAETP---TKKLWSYDI 205 (314)
T ss_dssp -CCC---BTTSSSCEEEEEECTT-SCEEEEEE---------EESSEEEEEEEECTTSCEEEEEEEETT---TTEEEEEEE
T ss_pred -ccc---ccccCCCCeEEEECCC-CCEEEecc---------CCCCcceEEEecccCCCCCEEEEEECC---CCeEEEEEC
Confidence 000 0001122568888887 55544421 11234568999 999866655322 245888887
Q ss_pred C-CCceEE--EEEeccCceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCce-eeccccCCeEEEEEEee
Q 004067 347 K-TGQRKV--ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGV 421 (776)
Q Consensus 347 ~-~g~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~ 421 (776)
+ +|.... +....... .+ ..+.++..++++.+|+++ .++ .|+++++++++ ...+......+..+. +
T Consensus 206 ~~~g~~~~~~~~~~~~~~------~~-~~p~~i~~d~~G~l~v~~~~~~--~i~~~d~~~g~~~~~~~~~~~~~~~i~-~ 275 (314)
T 1pjx_A 206 KGPAKIENKKVWGHIPGT------HE-GGADGMDFDEDNNLLVANWGSS--HIEVFGPDGGQPKMRIRCPFEKPSNLH-F 275 (314)
T ss_dssp EETTEEEEEEEEEECCCC------SS-CEEEEEEEBTTCCEEEEEETTT--EEEEECTTCBSCSEEEECSSSCEEEEE-E
T ss_pred CCCCccccceEEEECCCC------CC-CCCCceEECCCCCEEEEEcCCC--EEEEEcCCCCcEeEEEeCCCCCceeEE-E
Confidence 6 454321 11110000 00 001112334444445443 344 89999998443 344443333344544 7
Q ss_pred cCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 422 NEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 422 s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
++||+.||+.....+ .|+++++.
T Consensus 276 ~~dg~~l~v~~~~~~----~l~~~~~~ 298 (314)
T 1pjx_A 276 KPQTKTIFVTEHENN----AVWKFEWQ 298 (314)
T ss_dssp CTTSSEEEEEETTTT----EEEEEECS
T ss_pred CCCCCEEEEEeCCCC----eEEEEeCC
Confidence 999998888876543 57777774
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-06 Score=89.67 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=141.6
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCC
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCS 158 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~ 158 (776)
..|+++++++++...+... ......+.|++ ++..|+++ ..+.|++++++++
T Consensus 96 ~~I~~i~~~~~~~~~~~~~------------------------~~~~~gl~~d~---~~~~ly~~D~~~~~I~r~~~~g~ 148 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN------------------------LENAIALDFHH---RRELVFWSDVTLDRILRANLNGS 148 (386)
T ss_dssp SCEEEECTTSCCCEEEECS------------------------CSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSC
T ss_pred ccceeeccCCCcEEEEecC------------------------CCccEEEEEec---CCCeEEEEeCCCCcEEEEecCCC
Confidence 3699999998877666531 13467889998 88888887 5678999999998
Q ss_pred ccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEEC
Q 004067 159 KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWS 236 (776)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 236 (776)
..+ .+..........+++.+.+..|.++.. +.|+++++++...+.+...+. ....+++..
T Consensus 149 ~~~-~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l-----------------~~P~giavd 210 (386)
T 3v65_B 149 NVE-EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL-----------------EKPRAIALH 210 (386)
T ss_dssp CEE-EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC-----------------SCEEEEEEE
T ss_pred CcE-EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC-----------------CCCcEEEEE
Confidence 765 332222122466888888888777754 468888888766555543221 113477899
Q ss_pred CCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceE
Q 004067 237 LDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYL 316 (776)
Q Consensus 237 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 316 (776)
|++..|++..... ...|+++++++...+.+-. .....-
T Consensus 211 p~~g~ly~td~~~----------------------------------~~~I~r~~~dG~~~~~~~~--------~~~~~P 248 (386)
T 3v65_B 211 PMEGTIYWTDWGN----------------------------------TPRIEASSMDGSGRRIIAD--------THLFWP 248 (386)
T ss_dssp TTTTEEEEEECSS----------------------------------SCEEEEEETTSCSCEEEEC--------SSCSCE
T ss_pred cCCCeEEEeccCC----------------------------------CCEEEEEeCCCCCcEEEEE--------CCCCCe
Confidence 9988887654211 1357888888776655522 122345
Q ss_pred EEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEE
Q 004067 317 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLY 396 (776)
Q Consensus 317 ~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~ 396 (776)
..++|+|+++.|+++.. ....|+++|++++..+.+..... ..+.+++.+.+.+||+....+ .|.
T Consensus 249 nGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~-----------~~P~giav~~~~ly~td~~~~--~V~ 312 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQGL-----------PHPFAITVFEDSLYWTDWHTK--SIN 312 (386)
T ss_dssp EEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECSSC-----------SSEEEEEEETTEEEEEETTTT--EEE
T ss_pred eeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEECCC-----------CCceEEEEECCEEEEeeCCCC--eEE
Confidence 67999998877777643 23469999998766655543211 111122334455555543333 788
Q ss_pred EEe-CCCceeecc
Q 004067 397 LHD-INGTCLGPI 408 (776)
Q Consensus 397 ~~~-~~g~~~~~l 408 (776)
+++ .+|...+.|
T Consensus 313 ~~~~~~G~~~~~i 325 (386)
T 3v65_B 313 SANKFTGKNQEII 325 (386)
T ss_dssp EEETTTCCSCEEE
T ss_pred EEECCCCcceEEE
Confidence 887 445444444
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.5e-06 Score=85.87 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=140.3
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCC
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCS 158 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~ 158 (776)
..|+++++++.+...+... ......+.|++ .++.|+++ ..+.|++++++++
T Consensus 53 ~~I~~i~~~g~~~~~~~~~------------------------~~~~~~l~~d~---~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN------------------------LENAIALDFHH---RRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp SCEEEECTTSCCEEEEECS------------------------CSCEEEEEEET---TTTEEEEEETTTTEEEEEETTSC
T ss_pred cceEEEeCCCCeeEEeecC------------------------CCceEEEEEec---cccEEEEEeccCCceEEEecCCC
Confidence 3599999998877666531 13466789998 88889887 4678999999998
Q ss_pred ccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEEC
Q 004067 159 KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWS 236 (776)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 236 (776)
..+ .+..........+++.+.+..|.++.. +.|+++++++...+.+..... ....++++.
T Consensus 106 ~~~-~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l-----------------~~P~~iavd 167 (349)
T 3v64_C 106 NVE-EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL-----------------EKPRAIALH 167 (349)
T ss_dssp SCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC-----------------SCEEEEEEE
T ss_pred Cce-EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC-----------------CCcceEEEe
Confidence 766 432221122456788888888877754 468999988766555543221 113478899
Q ss_pred CCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceE
Q 004067 237 LDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYL 316 (776)
Q Consensus 237 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 316 (776)
|++..|++..... ...|+++++++...+.+- ......-
T Consensus 168 p~~g~ly~td~~~----------------------------------~~~I~r~~~dG~~~~~~~--------~~~~~~P 205 (349)
T 3v64_C 168 PMEGTIYWTDWGN----------------------------------TPRIEASSMDGSGRRIIA--------DTHLFWP 205 (349)
T ss_dssp TTTTEEEEEECSS----------------------------------SCEEEEEETTSCSCEESC--------CSSCSCE
T ss_pred cCcCeEEEeccCC----------------------------------CCEEEEEeCCCCCcEEEE--------ECCCCCc
Confidence 9888887654211 135788888876655441 1123345
Q ss_pred EEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEE
Q 004067 317 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLY 396 (776)
Q Consensus 317 ~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~ 396 (776)
..++|+|+++.|+++.. ....|+.+|++++..+.+...... .| .+++.+.+.+||+....+ .|.
T Consensus 206 nGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~~~~~---------~P--~giav~~~~ly~td~~~~--~V~ 269 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQGLP---------HP--FAITVFEDSLYWTDWHTK--SIN 269 (349)
T ss_dssp EEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCS---------SE--EEEEEETTEEEEEETTTT--EEE
T ss_pred ceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEeCCCC---------Cc--eEEEEECCEEEEecCCCC--eEE
Confidence 67999998877777643 234699999987666555432110 11 122233445555543344 677
Q ss_pred EEe-CCCceeecc
Q 004067 397 LHD-INGTCLGPI 408 (776)
Q Consensus 397 ~~~-~~g~~~~~l 408 (776)
+++ .+|+..+.|
T Consensus 270 ~~~~~~G~~~~~i 282 (349)
T 3v64_C 270 SANKFTGKNQEII 282 (349)
T ss_dssp EEETTTCCSCEEE
T ss_pred EEEccCCCccEEe
Confidence 777 444443333
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-05 Score=79.27 Aligned_cols=272 Identities=10% Similarity=0.035 Sum_probs=152.5
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+..+.++|||+. .+..... ..|+++|++ ++...+..... ...+....+++
T Consensus 16 ~~~~i~~d~~g~l-~v~~~~~----~~v~~~d~~-~~~~~~~~~~~----------------------~~~~~~i~~~~- 66 (299)
T 2z2n_A 16 GPYGITVSDKGKV-WITQHKA----NMISCINLD-GKITEYPLPTP----------------------DAKVMCLTISS- 66 (299)
T ss_dssp CEEEEEECTTSCE-EEEETTT----TEEEEECTT-CCEEEEECSST----------------------TCCEEEEEECT-
T ss_pred CccceEECCCCCE-EEEecCC----CcEEEEcCC-CCeEEecCCcc----------------------cCceeeEEECC-
Confidence 3578899999983 3333222 469999998 66554442100 13567788889
Q ss_pred CCCceEEEEeC-CCcEEEEeCCCCccceecC-CCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCC
Q 004067 136 SSKKKIIMVPL-PDGIYFQDLSCSKPELKLS-SSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 136 ~~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
||+..+... ++.|+++|.++. .+ .+. .........+.++|||+..+-.. .+.|+++++ +++.+.+......
T Consensus 67 --~g~l~v~~~~~~~i~~~~~~g~-~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~- 140 (299)
T 2z2n_A 67 --DGEVWFTENAANKIGRITKKGI-IK-EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKG- 140 (299)
T ss_dssp --TSCEEEEETTTTEEEEECTTSC-EE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTT-
T ss_pred --CCCEEEeCCCCCeEEEECCCCc-EE-EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCC-
Confidence 998555544 567999998743 33 222 11222356788899986433222 346999998 6666554322110
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
.....++++|||+ |++..... ..|+++|.
T Consensus 141 ---------------~~~~~i~~~~~g~-l~v~~~~~-----------------------------------~~i~~~~~ 169 (299)
T 2z2n_A 141 ---------------SYPSFITLGSDNA-LWFTENQN-----------------------------------NAIGRITE 169 (299)
T ss_dssp ---------------CCEEEEEECTTSC-EEEEETTT-----------------------------------TEEEEECT
T ss_pred ---------------CCCceEEEcCCCC-EEEEeCCC-----------------------------------CEEEEEcC
Confidence 0134678899985 54433111 24788888
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccC
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 372 (776)
+++...+..+ ........+.+++||++ ++.. . ....|+++|+ ++..+.+....... .
T Consensus 170 -~g~~~~~~~~-------~~~~~~~~i~~~~~g~l-~v~~-~--~~~~i~~~~~-~g~~~~~~~~~~~~----------~ 226 (299)
T 2z2n_A 170 -SGDITEFKIP-------TPASGPVGITKGNDDAL-WFVE-I--IGNKIGRITT-SGEITEFKIPTPNA----------R 226 (299)
T ss_dssp -TCCEEEEECS-------STTCCEEEEEECTTSSE-EEEE-T--TTTEEEEECT-TCCEEEEECSSTTC----------C
T ss_pred -CCcEEEeeCC-------CCCCcceeEEECCCCCE-EEEc-c--CCceEEEECC-CCcEEEEECCCCCC----------C
Confidence 6666655332 22345677899999983 3332 1 2335899999 77765432211000 0
Q ss_pred CCCccccCCeEEEEec-cCCceEEEEEeCCCceeeccc--cCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 373 DKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPIT--EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~~~~lt--~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
...+..++++-+|+++ ..+ .|+++++++ ....+. .+...+..+. + ++|+ ||+.... ..|++++.
T Consensus 227 ~~~i~~~~~g~l~v~~~~~~--~i~~~d~~g-~~~~~~~~~~~~~~~~i~-~-~~g~-l~v~~~~-----~~l~~~~~ 293 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTEWGAN--KIGRLTSNN-IIEEYPIQIKSAEPHGIC-F-DGET-IWFAMEC-----DKIGKLTL 293 (299)
T ss_dssp EEEEEECSTTCEEEEETTTT--EEEEEETTT-EEEEEECSSSSCCEEEEE-E-CSSC-EEEEETT-----TEEEEEEE
T ss_pred ceeEEECCCCCEEEeccCCc--eEEEECCCC-ceEEEeCCCCCCccceEE-e-cCCC-EEEEecC-----CcEEEEEc
Confidence 0112233333344443 344 799999854 444442 2223344544 5 6666 5666442 25777776
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.4e-08 Score=84.24 Aligned_cols=95 Identities=17% Similarity=-0.024 Sum_probs=63.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|.++++....+ .|+||++| + .. ..|.. . +++ +|.|+++|+||+|.+......
T Consensus 9 ~~g~~~~~~~~g~---------~~~vv~~H-~--~~---~~~~~----~---l~~-~~~v~~~d~~G~G~s~~~~~~--- 62 (131)
T 2dst_A 9 LYGLNLVFDRVGK---------GPPVLLVA-E--EA---SRWPE----A---LPE-GYAFYLLDLPGYGRTEGPRMA--- 62 (131)
T ss_dssp ETTEEEEEEEECC---------SSEEEEES-S--SG---GGCCS----C---CCT-TSEEEEECCTTSTTCCCCCCC---
T ss_pred ECCEEEEEEEcCC---------CCeEEEEc-C--CH---HHHHH----H---HhC-CcEEEEECCCCCCCCCCCCCC---
Confidence 3777777665432 26799999 2 11 12321 1 444 599999999999987543211
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 661 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~ 661 (776)
.+++.+.+..+.+.. +.+++.++||||||.+++.++.++|.
T Consensus 63 -------~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 63 -------PEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp -------HHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred -------HHHHHHHHHHHHHHc--CCCccEEEEEChHHHHHHHHHhcCCc
Confidence 444444444444432 34589999999999999999999886
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-08 Score=109.29 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=83.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccc--ccccchhhhHHHH-hCCcEEEEECCCCC----CCCchhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDS--WINTVDMRAQYLR-SKGILVWKLDNRGT----ARRGLKFEAS 609 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~--~~~~~~~~~~~l~-~~G~~v~~~d~rg~----g~~~~~~~~~ 609 (776)
+...+|.|.......+++|+||++|||+........ +...+......|+ ..|++|+.+|||.. ...+.
T Consensus 81 l~lnv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~~~----- 155 (579)
T 2bce_A 81 LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGD----- 155 (579)
T ss_dssp CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSS-----
T ss_pred CEEEEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcCCC-----
Confidence 566677886531123578999999998643321110 0000011133444 45799999999931 11110
Q ss_pred hhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCC
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPV 672 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~ 672 (776)
....+...+.|+..+++|+.++ ...|+++|.|+|+|.||+++..++.. ...+|+++|+.++.
T Consensus 156 -~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 156 -SNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp -TTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred -CCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 0111222478999999999875 34799999999999999999988764 35689999988774
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-08 Score=107.97 Aligned_cols=118 Identities=15% Similarity=0.111 Sum_probs=78.7
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCC----CCCCchhhhh-hhhhccCCccHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRG----TARRGLKFEA-SIKHNCGRIDAEDQLTG 625 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg----~g~~~~~~~~-~~~~~~~~~~~~D~~~~ 625 (776)
+++|+||++|||+......... ......|+ ..|++|+.+|||- +......+.. ......+...+.|+..+
T Consensus 139 ~~~PV~v~iHGGg~~~g~~~~~----~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~a 214 (585)
T 1dx4_A 139 NGLPILIWIYGGGFMTGSATLD----IYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALA 214 (585)
T ss_dssp SSEEEEEEECCSTTTCCCTTCG----GGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHH
T ss_pred CCCCEEEEECCCcccCCCCCCC----CCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHH
Confidence 5789999999986543211111 11134555 4799999999992 2211111100 01111233458899999
Q ss_pred HHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCC
Q 004067 626 AEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 673 (776)
Q Consensus 626 i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~ 673 (776)
++|+.++ ...|+++|.|+|+|+||++++.++... ..+|+++|+.+|..
T Consensus 215 l~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 215 IRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 9999986 246899999999999999998887752 46899999988754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-06 Score=83.16 Aligned_cols=195 Identities=7% Similarity=-0.006 Sum_probs=113.1
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCce-eEEeeCCCCCceec
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQ-RQLTHGANGNTVTH 216 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~-~~lt~~~~~~~~~~ 216 (776)
++.|+.. .++.|+++|.++|+....+............++|||+.++ ..++.|+.++. +|+. .++.. +....
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~-~~~~~--- 78 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA-PAGCE--- 78 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC-CTTCE---
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC-CCCcc---
Confidence 5555554 6778999999888876455443212367789999999776 55677999999 5554 33332 21100
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 296 (776)
.....++|||+.|+....+. ..++.+|.+++.
T Consensus 79 -------------~~~~~~~~dG~~lv~~~~~~-----------------------------------~~v~~vd~~Gk~ 110 (276)
T 3no2_A 79 -------------MQTARILPDGNALVAWCGHP-----------------------------------STILEVNMKGEV 110 (276)
T ss_dssp -------------EEEEEECTTSCEEEEEESTT-----------------------------------EEEEEECTTSCE
T ss_pred -------------ccccEECCCCCEEEEecCCC-----------------------------------CEEEEEeCCCCE
Confidence 23567899999776544211 456777776665
Q ss_pred eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCc
Q 004067 297 VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGV 376 (776)
Q Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 376 (776)
+..+....+. .........+++++||++++... ....|+.+|++ |+..--.......+. .
T Consensus 111 l~~~~~~~~~---~~~~~~~~~v~~~~~G~~lv~~~----~~~~v~~~d~~-G~~~w~~~~~~~~~~------------~ 170 (276)
T 3no2_A 111 LSKTEFETGI---ERPHAQFRQINKNKKGNYLVPLF----ATSEVREIAPN-GQLLNSVKLSGTPFS------------S 170 (276)
T ss_dssp EEEEEECCSC---SSGGGSCSCCEECTTSCEEEEET----TTTEEEEECTT-SCEEEEEECSSCCCE------------E
T ss_pred EEEEeccCCC---CcccccccCceECCCCCEEEEec----CCCEEEEECCC-CCEEEEEECCCCccc------------e
Confidence 6555443110 01111222356799998765432 34569999998 665443332211111 0
Q ss_pred ccc-CCeEEEEeccCCceEEEEEeCC-Cceeeccc
Q 004067 377 TKY-SGGFIWASEKTGFRHLYLHDIN-GTCLGPIT 409 (776)
Q Consensus 377 ~~~-~~~~~~~s~~~g~~~l~~~~~~-g~~~~~lt 409 (776)
... ++.+++....++ .|+.+|++ |....++.
T Consensus 171 ~~~~~g~~~v~~~~~~--~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 171 AFLDNGDCLVACGDAH--CFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EECTTSCEEEECBTTS--EEEEECTTTCCEEEEEE
T ss_pred eEcCCCCEEEEeCCCC--eEEEEeCcCCcEEEEec
Confidence 112 344555554444 79999999 44444454
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.5e-06 Score=83.33 Aligned_cols=188 Identities=6% Similarity=0.003 Sum_probs=115.7
Q ss_pred cceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCc
Q 004067 80 SRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSK 159 (776)
Q Consensus 80 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~ 159 (776)
...|+++|.++|+...-+.... ........++| ||+.++ ..+..|+.+|.++..
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~----------------------~~~~~~~~~~p---dG~ilv-s~~~~V~~~d~~G~~ 67 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEK----------------------GWECNSVAATK---AGEILF-SYSKGAKMITRDGRE 67 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCT----------------------TCCCCEEEECT---TSCEEE-ECBSEEEEECTTSCE
T ss_pred CCEEEEEECCCCeEEEEeCCCc----------------------cCCCcCeEECC---CCCEEE-eCCCCEEEECCCCCE
Confidence 3579999998887644332111 02466778899 998766 667889999995443
Q ss_pred cceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECC
Q 004067 160 PELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSL 237 (776)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp 237 (776)
.. .+.......+..+.++|||+.++.... ..++.++.++....++...... .+. ......++..+
T Consensus 68 ~W-~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~----~~~--------~~~~~~v~~~~ 134 (276)
T 3no2_A 68 LW-NIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGI----ERP--------HAQFRQINKNK 134 (276)
T ss_dssp EE-EEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSC----SSG--------GGSCSCCEECT
T ss_pred EE-EEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCC----Ccc--------cccccCceECC
Confidence 43 555432223567889999998887765 3588888765555555433210 000 00123456889
Q ss_pred CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEE
Q 004067 238 DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLA 317 (776)
Q Consensus 238 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 317 (776)
||+.|+....+ ..|+.+|.++.....+... ....
T Consensus 135 ~G~~lv~~~~~------------------------------------~~v~~~d~~G~~~w~~~~~----------~~~~ 168 (276)
T 3no2_A 135 KGNYLVPLFAT------------------------------------SEVREIAPNGQLLNSVKLS----------GTPF 168 (276)
T ss_dssp TSCEEEEETTT------------------------------------TEEEEECTTSCEEEEEECS----------SCCC
T ss_pred CCCEEEEecCC------------------------------------CEEEEECCCCCEEEEEECC----------CCcc
Confidence 99976543211 3478899884444444331 1223
Q ss_pred EEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 318 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 318 ~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
.....++|+.++... ....|+.+|+++|+..--..
T Consensus 169 ~~~~~~~g~~~v~~~----~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 169 SSAFLDNGDCLVACG----DAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEEECTTSCEEEECB----TTSEEEEECTTTCCEEEEEE
T ss_pred ceeEcCCCCEEEEeC----CCCeEEEEeCcCCcEEEEec
Confidence 456789998665443 22359999999888654433
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-05 Score=87.53 Aligned_cols=327 Identities=9% Similarity=0.043 Sum_probs=178.3
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..|..++++|++++|+|..... ..|++++++|...+.+.... + .++ ..+.+
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~----~~I~~~~~dG~~~~~~~~~~--------------~------~~P---~gi~~-- 221 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKL----NFIHKSNLDGTNRQAVVKGS--------------L------PHP---FALTL-- 221 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTT----CCEEEESSSCCEEC-----------------------------C---CCEEE--
T ss_pred CCCcEEEEEccCCEEEEEeCCC----CeEEEecCCCCccEEEEeCC--------------C------CCc---eEEEE--
Confidence 3467889999999999886543 57999999987765554200 0 011 22333
Q ss_pred cCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCC-----------------------------------------
Q 004067 135 TSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSP----------------------------------------- 171 (776)
Q Consensus 135 ~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~----------------------------------------- 171 (776)
++..|+++ ....|+++|..+|+....+.......
T Consensus 222 ---~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~ 298 (619)
T 3s94_A 222 ---FEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCA 298 (619)
T ss_dssp ---SSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEE
T ss_pred ---eCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEe
Confidence 34477777 45679999987775431222110000
Q ss_pred -ccCceeCCCCC--------EEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeE
Q 004067 172 -VIDPHLSSDGT--------MIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFI 242 (776)
Q Consensus 172 -~~~~~~SpDg~--------~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l 242 (776)
.......+|++ .|+|....+|..++++++....+...-. + +....++.|.+.++.|
T Consensus 299 C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~------~---------l~~~~~ld~d~~~~~l 363 (619)
T 3s94_A 299 CPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLE------D---------IRHAIAIDYDPVEGYI 363 (619)
T ss_dssp CCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCS------C---------CSSEEEEEEETTTTEE
T ss_pred CCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEecc------c---------cCccEEEEEEcCCCeE
Confidence 00012233432 4666666778777777654332221100 0 1113367788877878
Q ss_pred EEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec
Q 004067 243 AFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM 322 (776)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S 322 (776)
++..... ..|+.++++++....+-. ........+++.
T Consensus 364 y~sD~~~-----------------------------------~~I~r~~~~g~~~~~v~~--------~~~~~p~GlAvD 400 (619)
T 3s94_A 364 YWTDDEV-----------------------------------RAIRRSFIDGSGSQFVVT--------AQIAHPDGIAVD 400 (619)
T ss_dssp EEEETTT-----------------------------------TEEEEEETTSCSCEEEEC--------SSCSCCCEEEEE
T ss_pred EEEeCCC-----------------------------------CeEEEEEcCCCccEEEEE--------CCCCCcCceEEe
Confidence 7754211 347788887765444422 111233457777
Q ss_pred cCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCC
Q 004067 323 HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDIN 401 (776)
Q Consensus 323 pDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~ 401 (776)
+.++.|+++. . ....|.+.++++...+.+....-. .+.+++.++ .+.+|.++......|++.+++
T Consensus 401 ~~~~~lY~tD-~--~~~~I~v~~~~G~~~~~l~~~~l~-----------~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d 466 (619)
T 3s94_A 401 WVARNLYWTD-T--GTDRIEVTRLNGTMRKILISEDLE-----------EPRAIVLDPMVGYMYWTDWGEIPKIERAALD 466 (619)
T ss_dssp TTTTEEEEEE-T--TTTEEEEEETTSCSCEEEECTTCC-----------SEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cccCcEEEEe-C--CCCcEEEEeCCCCeEEEEEECCCC-----------CeeeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence 6666666653 2 234688999987766665532110 011122233 245555654334689999999
Q ss_pred CceeeccccCCe-EEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC--CCeEEEEEcCCcCE
Q 004067 402 GTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG--KGKHVAVLDHNMRN 478 (776)
Q Consensus 402 g~~~~~lt~~~~-~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~--~~~~~~~~spdg~~ 478 (776)
|...+.|..... ...++ .++++++.||+..... ..|+++++ +|. ..+.+... ....++++.. .+
T Consensus 467 G~~~~~l~~~~l~~P~Gl-alD~~~~~LY~aD~~~----~~I~~~~~--dG~----~~~~~~~~~l~~P~glav~~--~~ 533 (619)
T 3s94_A 467 GSDRVVLVNTSLGWPNGL-ALDYDEGKIYWGDAKT----DKIEVMNT--DGT----GRRVLVEDKIPHIFGFTLLG--DY 533 (619)
T ss_dssp SCSCEEEECSSCSCEEEE-EEETTTTEEEEEETTT----TEEEEEES--SSC----CCEEEEECCCCSSCCEEEET--TE
T ss_pred CCccEEEEeCCCCCCeee-EEcccCCEEEEEECCC----CEEEEEec--CCC----ceEEEeccCCCCcEEEEEEC--CE
Confidence 987666654432 22333 4888888899987654 37899998 565 22233211 1223344433 34
Q ss_pred EEEEeeCCCCCCEEEEEEcCCCc
Q 004067 479 FVDFHDSLDSPPRILLCSLQDGS 501 (776)
Q Consensus 479 l~~~~~~~~~~~~i~~~~~~~~~ 501 (776)
|.++-.. ...|++.+..+|.
T Consensus 534 ly~tD~~---~~~I~~~~k~~g~ 553 (619)
T 3s94_A 534 VYWTDWQ---RRSIERVHKRSAE 553 (619)
T ss_dssp EEEECTT---SSCEEEEESSSCC
T ss_pred EEEeecC---CCeEEEEEcCCCc
Confidence 5444322 2357777776664
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.1e-06 Score=83.42 Aligned_cols=200 Identities=8% Similarity=0.007 Sum_probs=115.7
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.|..+.++|||+ |++..... ...|++++..++....+.... ......+.+++
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~---~~~i~~~~~~~~~~~~~~~~~-----------------------~~~p~~i~~~~- 76 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGM---YGRVVKLATGSTGTTVLPFNG-----------------------LYQPQGLAVDG- 76 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSS---SCEEEEECC-----EECCCCS-----------------------CCSCCCEEECT-
T ss_pred CccceEECCCCC-EEEEccCC---CCcEEEecCCCcccceEeeCC-----------------------cCCcceeEECC-
Confidence 457889999998 54414222 246999998776544332100 12455678999
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
||+.++...++.|+++|.+++... .+..........+.++|||+ |.+.. ++.|++++..+..........
T Consensus 77 --~g~l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~---- 148 (270)
T 1rwi_B 77 --AGTVYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTG---- 148 (270)
T ss_dssp --TCCEEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCS----
T ss_pred --CCCEEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeecccc----
Confidence 998444435678999999887665 44322212356788999997 33332 246888865444332221111
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
......++++|||+ |++..... ..|+++|.+
T Consensus 149 -------------~~~p~~i~~~~~g~-l~v~~~~~-----------------------------------~~i~~~~~~ 179 (270)
T 1rwi_B 149 -------------LNDPDGVAVDNSGN-VYVTDTDN-----------------------------------NRVVKLEAE 179 (270)
T ss_dssp -------------CCSCCCEEECTTCC-EEEEEGGG-----------------------------------TEEEEECTT
T ss_pred -------------CCCceeEEEeCCCC-EEEEECCC-----------------------------------CEEEEEecC
Confidence 01134788999997 54443211 247888888
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
++....... ........+++++||. +++... ....|+++|+++....
T Consensus 180 ~~~~~~~~~--------~~~~~p~~i~~d~~g~-l~v~~~---~~~~v~~~~~~~~~~~ 226 (270)
T 1rwi_B 180 SNNQVVLPF--------TDITAPWGIAVDEAGT-VYVTEH---NTNQVVKLLAGSTTST 226 (270)
T ss_dssp TCCEEECCC--------SSCCSEEEEEECTTCC-EEEEET---TTSCEEEECTTCSCCE
T ss_pred CCceEeecc--------cCCCCceEEEECCCCC-EEEEEC---CCCcEEEEcCCCCcce
Confidence 776544311 1224567899999995 444432 2335899998776543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.6e-06 Score=83.02 Aligned_cols=200 Identities=8% Similarity=-0.040 Sum_probs=128.2
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|+|+++.|++..... ..|++++++++..+.+.... ........++|
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~~~~~~~~-----------------------~~~p~~ia~d~-- 88 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISE----PSIGRASLHGGEPTTIIRQD-----------------------LGSPEGIALDH-- 88 (267)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEESSSCCCEEEECTT-----------------------CCCEEEEEEET--
T ss_pred EEEEEEecCCCEEEEEECCC----CEEEEEecCCCCcEEEEECC-----------------------CCCccEEEEEe--
Confidence 47889999999999886643 47999999988765554311 12456788999
Q ss_pred CCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCC
Q 004067 137 SKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 137 ~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~ 210 (776)
++..|+++ ..+.|+++++++...+ .+..........++++|++..|.+... +.|+++++++...+.+...+.
T Consensus 89 -~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~ 166 (267)
T 1npe_A 89 -LGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL 166 (267)
T ss_dssp -TTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTC
T ss_pred -cCCeEEEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCC
Confidence 98888887 4567999999887655 333222123566789998888777653 368888887655444432211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
....+++++||+++|++..... ..|+++
T Consensus 167 -----------------~~P~gia~d~~~~~lyv~d~~~-----------------------------------~~I~~~ 194 (267)
T 1npe_A 167 -----------------GLPNGLTFDAFSSQLCWVDAGT-----------------------------------HRAECL 194 (267)
T ss_dssp -----------------SCEEEEEEETTTTEEEEEETTT-----------------------------------TEEEEE
T ss_pred -----------------CCCcEEEEcCCCCEEEEEECCC-----------------------------------CEEEEE
Confidence 1134788999999887654211 347888
Q ss_pred EcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 291 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 291 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
|++++....+.. ....-..++ +|+..++++. .. ...|+++|+++|+...
T Consensus 195 ~~~g~~~~~~~~---------~~~~P~gi~--~d~~~lyva~-~~--~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 195 NPAQPGRRKVLE---------GLQYPFAVT--SYGKNLYYTD-WK--TNSVIAMDLAISKEMD 243 (267)
T ss_dssp ETTEEEEEEEEE---------CCCSEEEEE--EETTEEEEEE-TT--TTEEEEEETTTTEEEE
T ss_pred ecCCCceEEEec---------CCCCceEEE--EeCCEEEEEE-CC--CCeEEEEeCCCCCceE
Confidence 887665444321 111122333 4555565543 22 2358999999887543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.1e-06 Score=84.28 Aligned_cols=237 Identities=12% Similarity=0.027 Sum_probs=131.0
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCC-----CCCccCcee-CCCCCEEEEEE---CCcEEEE
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSS-----CSPVIDPHL-SSDGTMIAFVR---DCELHVL 195 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~-----~~~~~~~~~-SpDg~~la~~~---~~~l~~~ 195 (776)
......+++ ||+.++.. .++.|++||.++.... .+.... ......+++ +++|+ |.+.. ++.|+++
T Consensus 31 ~p~~v~~~~---~g~l~v~~~~~~~i~~~d~~g~~~~-~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 31 EPSGVAVNA---QNDIIVADTNNHRIQIFDKEGRFKF-QFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIY 105 (286)
T ss_dssp CEEEEEECT---TCCEEEEEGGGTEEEEECTTSCEEE-EECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEE
T ss_pred CCceEEECC---CCCEEEEECCCCEEEEECCCCcEEE-EecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEEE
Confidence 456778899 99855443 5678999999865544 443211 112345677 45665 44443 4568888
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
+.++...+.+..... .....++++|||+ |++.....
T Consensus 106 d~~g~~~~~~~~~~~-----------------~~~~~i~~~~~g~-l~v~~~~~-------------------------- 141 (286)
T 1q7f_A 106 NQYGQFVRKFGATIL-----------------QHPRGVTVDNKGR-IIVVECKV-------------------------- 141 (286)
T ss_dssp CTTSCEEEEECTTTC-----------------SCEEEEEECTTSC-EEEEETTT--------------------------
T ss_pred CCCCcEEEEecCccC-----------------CCceEEEEeCCCC-EEEEECCC--------------------------
Confidence 854443333321110 0134678999997 54433111
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
..|++||.++.....+.. .........++++|||+ ++++. . ....|++||.++.....+.
T Consensus 142 ---------~~i~~~~~~g~~~~~~~~-------~~~~~~p~~i~~~~~g~-l~v~~-~--~~~~i~~~~~~g~~~~~~~ 201 (286)
T 1q7f_A 142 ---------MRVIIFDQNGNVLHKFGC-------SKHLEFPNGVVVNDKQE-IFISD-N--RAHCVKVFNYEGQYLRQIG 201 (286)
T ss_dssp ---------TEEEEECTTSCEEEEEEC-------TTTCSSEEEEEECSSSE-EEEEE-G--GGTEEEEEETTCCEEEEES
T ss_pred ---------CEEEEEcCCCCEEEEeCC-------CCccCCcEEEEECCCCC-EEEEE-C--CCCEEEEEcCCCCEEEEEc
Confidence 347888876655555432 12233567899999998 33332 2 2346999998654444332
Q ss_pred EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCe--EEEEEEeecCCCcEEEEEEc
Q 004067 356 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDW--MVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~--~~~~~~~~s~dg~~i~~~~~ 433 (776)
.. .. + ..+.++..++++-+|+++......|.+|+.++.....+..+.. ....+ .++++|+ +|++.
T Consensus 202 ~~-g~--------~-~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i-~~~~~g~-l~vs~- 268 (286)
T 1q7f_A 202 GE-GI--------T-NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDV-ALMDDGS-VVLAS- 268 (286)
T ss_dssp CT-TT--------S-CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEE-EEETTTE-EEEEE-
T ss_pred cC-Cc--------c-CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeE-EECCCCc-EEEEC-
Confidence 11 00 0 0011223344444555544332389999988877666654321 13344 4899987 66664
Q ss_pred cCCCceeeEEEEE
Q 004067 434 LDGPLESHLYCAK 446 (776)
Q Consensus 434 ~~~~~~~~l~~~~ 446 (776)
.+ ..+.+|++.
T Consensus 269 ~~--~~v~v~~~~ 279 (286)
T 1q7f_A 269 KD--YRLYIYRYV 279 (286)
T ss_dssp TT--TEEEEEECS
T ss_pred CC--CeEEEEEcc
Confidence 33 346677653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00018 Score=80.38 Aligned_cols=336 Identities=7% Similarity=-0.028 Sum_probs=180.6
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..|..+++++++++|+|..... ..|++++++|+..+.+... .-..+..+-
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~----~~I~~~d~dG~~~~v~~~~--------------------------l~~P~glav 215 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDT----NLIESSNMLGLNREVIADD--------------------------LPHPFGLTQ 215 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEEEC--------------------------CSCEEEEEE
T ss_pred CCcceEEEccccCEEEEEECCC----CEEEEEcCCCCceEEeecc--------------------------CCCceEEEE
Confidence 4468899999999999887644 5799999998776544321 112233444
Q ss_pred cCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCC-------------------CC---------------------c
Q 004067 135 TSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSC-------------------SP---------------------V 172 (776)
Q Consensus 135 ~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~-------------------~~---------------------~ 172 (776)
++.+|+++ ..+.|+.+|..+|+.+..+..... .. .
T Consensus 216 ---~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~ 292 (628)
T 4a0p_A 216 ---YQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCP 292 (628)
T ss_dssp ---ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECS
T ss_pred ---ECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcC
Confidence 55677777 457789999766654312211000 00 0
Q ss_pred cCceeCCCCC-------EEEEEECCcEEEEecCCCcee--EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEE
Q 004067 173 IDPHLSSDGT-------MIAFVRDCELHVLNLLINEQR--QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIA 243 (776)
Q Consensus 173 ~~~~~SpDg~-------~la~~~~~~l~~~~l~~g~~~--~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~ 243 (776)
......+|++ .|+|.....|..+.++..... .+... .+....++.|.+.++.|+
T Consensus 293 ~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~-----------------~~~~~~~ld~d~~~~~iy 355 (628)
T 4a0p_A 293 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH-----------------SLRNVRAIDYDPLDKQLY 355 (628)
T ss_dssp TTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCT-----------------TCSCEEEEEEETTTTEEE
T ss_pred CCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEeh-----------------hcCCceEEEEecCCCeEE
Confidence 0112234442 344555555555555432110 01000 111134677888777777
Q ss_pred EEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc
Q 004067 244 FTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH 323 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp 323 (776)
+..... ..|+.+++++.....+-.... ...........+++..
T Consensus 356 ~sD~~~-----------------------------------~~I~r~~~~g~~~~~v~~~~~--~~~~~~~~p~glAvD~ 398 (628)
T 4a0p_A 356 WIDSRQ-----------------------------------NMIRKAQEDGSQGFTVVVSSV--PSQNLEIQPYDLSIDI 398 (628)
T ss_dssp EEETTT-----------------------------------TEEEEEETTSCSCEEEEC----------CCCEEEEEEET
T ss_pred EEecCc-----------------------------------ceEEEEEcCCCCceEEEEccc--ccccccCCcceEEeec
Confidence 653211 235666766554333311000 0001223456788888
Q ss_pred CCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccC-CeEEEEeccCCce-EEEEEeCC
Q 004067 324 GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFR-HLYLHDIN 401 (776)
Q Consensus 324 Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~-~l~~~~~~ 401 (776)
.++.|+++.. ....|.+.++++...+.+...... .+.+++-++ .+.+|.++..... .|++.+++
T Consensus 399 ~~~nLY~td~---~~~~I~v~~~~G~~~~~l~~~~l~-----------~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d 464 (628)
T 4a0p_A 399 YSRYIYWTCE---ATNVINVTRLDGRSVGVVLKGEQD-----------RPRAVVVNPEKGYMYFTNLQERSPKIERAALD 464 (628)
T ss_dssp TTTEEEEEET---TTTEEEEEETTSCEEEEEEECTTC-----------CEEEEEEETTTTEEEEEEEETTEEEEEEEETT
T ss_pred cCCeEEEEcC---CCCEEEEEECCCCeEEEEEeCCCC-----------ceeeEEEecCCCeEEEeecCCCCCeEEEEeCC
Confidence 8877766642 233588888876544455432111 011122233 3455555554333 89999999
Q ss_pred CceeeccccCCeE-EEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC--CCeEEEEEcCCcCE
Q 004067 402 GTCLGPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG--KGKHVAVLDHNMRN 478 (776)
Q Consensus 402 g~~~~~lt~~~~~-~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~--~~~~~~~~spdg~~ 478 (776)
|...+.|...+.. ..+ +.++++++.||+..... ..|+++++ +|. ..+.+... ....++++. +..
T Consensus 465 G~~~~~l~~~~l~~P~g-la~D~~~~~LYw~D~~~----~~I~~~~~--dG~----~r~~~~~~~~~~P~glav~--~~~ 531 (628)
T 4a0p_A 465 GTEREVLFFSGLSKPIA-LALDSRLGKLFWADSDL----RRIESSDL--SGA----NRIVLEDSNILQPVGLTVF--ENW 531 (628)
T ss_dssp SCSCEEEECSSCSCEEE-EEEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEECSSCSCEEEEEEE--TTE
T ss_pred CCCcEEEEeccCCCccE-EEEeCCCCEEEEEeCCC----CEEEEEeC--CCC----ceEEEEcCCCCCcEEEEEE--CCE
Confidence 9887766554322 233 34888888899987654 36899998 665 33333322 223445443 345
Q ss_pred EEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 479 FVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 479 l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
|.++-... ..|++++..+|+..+.+.
T Consensus 532 ly~tD~~~---~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 532 LYWIDKQQ---QMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEEETTT---TEEEEEETTSSSCCEEEE
T ss_pred EEEEECCC---CeEEEEECcCCCCcEEEe
Confidence 55554332 468888877776555443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=7e-07 Score=92.43 Aligned_cols=110 Identities=5% Similarity=-0.202 Sum_probs=72.8
Q ss_pred CCCEEEEEeCCCCcCcc-eEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 65 DDNLITYLLSPDHSLSR-KVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 65 DG~~ia~~~~~~~~~~~-~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
+..+ +|+.+....... .|.++|+++++...-+.. +..- .+.+|| ||++++
T Consensus 30 ~~~~-~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v------------------------G~~P-~i~~sp---Dg~~ly 80 (368)
T 1mda_H 30 ISRR-SHITLPAYFAGTTENWVSCAGCGVTLGHSLG------------------------AFLS-LAVAGH---SGSDFA 80 (368)
T ss_dssp CTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------------CTTC-EEEECT---TSSCEE
T ss_pred CCCe-EEEECCccCCccceEEEEECCCCeEEEEEeC------------------------CCCC-ceEECC---CCCEEE
Confidence 4444 566654332112 899999999887443321 1122 688999 999999
Q ss_pred EeC-----------CCcEEEEeCCCCccceecCCC--C----CCCccCceeCCCCCEEEEEEC---CcEEE--EecCCCc
Q 004067 144 VPL-----------PDGIYFQDLSCSKPELKLSSS--S----CSPVIDPHLSSDGTMIAFVRD---CELHV--LNLLINE 201 (776)
Q Consensus 144 ~~~-----------~~~l~~~d~~~~~~~~~l~~~--~----~~~~~~~~~SpDg~~la~~~~---~~l~~--~~l~~g~ 201 (776)
+.. ++.|.++|+.+++....+.-+ . ......+.+||||++++.... +.+.+ +|+++
T Consensus 81 Van~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-- 158 (368)
T 1mda_H 81 LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-- 158 (368)
T ss_dssp EEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--
T ss_pred EEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--
Confidence 984 456999999999877444322 0 123568999999998766642 35777 88877
Q ss_pred eeEE
Q 004067 202 QRQL 205 (776)
Q Consensus 202 ~~~l 205 (776)
.+.+
T Consensus 159 v~~i 162 (368)
T 1mda_H 159 DQLT 162 (368)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 4444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-05 Score=79.40 Aligned_cols=235 Identities=11% Similarity=0.019 Sum_probs=135.2
Q ss_pred CEEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecC
Q 004067 182 TMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQG 261 (776)
Q Consensus 182 ~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 261 (776)
..|+|...+.|.++++++++...+...... ..++.|+++++.|++.....
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~~~~~------------------p~g~~~d~~~~~ly~~D~~~------------ 51 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRN------------------VVALDTEVASNRIYWSDLSQ------------ 51 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEECSCSS------------------EEEEEEETTTTEEEEEETTT------------
T ss_pred CEEEEECCCeEEEEECCCcceEehhcCCCc------------------eEEEEEEeCCCEEEEEECCC------------
Confidence 357888888999999998877665432211 34788999988887765321
Q ss_pred CCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC----CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCc
Q 004067 262 KSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG----GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQT 337 (776)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 337 (776)
..|+.+++++ .....+-. ........+++.+.+..|+++.. .
T Consensus 52 -----------------------~~I~~~~~~g~~~~~~~~~~~~--------~~~~~p~glavd~~~~~ly~~d~---~ 97 (316)
T 1ijq_A 52 -----------------------RMICSTQLDRAHGVSSYDTVIS--------RDIQAPDGLAVDWIHSNIYWTDS---V 97 (316)
T ss_dssp -----------------------TEEEEEEC--------CEEEEC--------SSCSCCCEEEEETTTTEEEEEET---T
T ss_pred -----------------------CcEEEEECCCCCCCcccEEEEe--------CCCCCcCEEEEeecCCeEEEEEC---C
Confidence 3467777776 22222211 11122345788876655665532 2
Q ss_pred eEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCceeeccccCCeEEE
Q 004067 338 KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVE 416 (776)
Q Consensus 338 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~ 416 (776)
...|.++++++...+.+...... .| .++..++ ++.+|+++......|++++++|...+.+........
T Consensus 98 ~~~I~~~~~~g~~~~~~~~~~~~---------~P--~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P 166 (316)
T 1ijq_A 98 LGTVSVADTKGVKRKTLFRENGS---------KP--RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166 (316)
T ss_dssp TTEEEEEETTSSSEEEEEECTTC---------CE--EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred CCEEEEEeCCCCceEEEEECCCC---------Cc--ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCc
Confidence 34688999987766666542211 01 1112222 334444544323589999999887666543332222
Q ss_pred EEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec-CC---CCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 417 QIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-NG---KGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 417 ~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~-~~---~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
.-+.++++++.||+..... ..|+++++ +|. ..+.+. .. .....+++. +..|.++.... ..|
T Consensus 167 ~gla~d~~~~~lY~~D~~~----~~I~~~d~--dg~----~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~---~~V 231 (316)
T 1ijq_A 167 NGITLDLLSGRLYWVDSKL----HSISSIDV--NGG----NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN---EAI 231 (316)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT---TEE
T ss_pred eEEEEeccCCEEEEEECCC----CeEEEEec--CCC----ceEEEeecCCccCCcEEEEEE--CCEEEEEECCC---CeE
Confidence 2345899999999987654 37888998 554 233332 11 124456663 45565554332 478
Q ss_pred EEEEcCCCceeEee
Q 004067 493 LLCSLQDGSLVLPL 506 (776)
Q Consensus 493 ~~~~~~~~~~~~~l 506 (776)
++++..+|+..+.+
T Consensus 232 ~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 232 FSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTTCCCCEEE
T ss_pred EEEeCCCCcceEEE
Confidence 88887677654444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-06 Score=88.69 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=76.5
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCC-eeeEEEee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLG-VTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~sp 134 (776)
.|..+..+|||=+|.......+.....|.++|.++++...-..... ...+ -..+.|+|
T Consensus 139 ~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~---------------------~~~~~~Yd~~~~p 197 (462)
T 2ece_A 139 RLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR---------------------GDQYLAYDFWWNL 197 (462)
T ss_dssp EEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC---------------------TTCCCCCCEEEET
T ss_pred cccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC---------------------CCccccceEEECC
Confidence 4566789999944444444445556789999999988744332110 0011 22578899
Q ss_pred cCCCceEEEEeC--------------------CCcEEEEeCCCCccceecCCCCC-CCccC--ceeCCCCCEEEEEEC--
Q 004067 135 TSSKKKIIMVPL--------------------PDGIYFQDLSCSKPELKLSSSSC-SPVID--PHLSSDGTMIAFVRD-- 189 (776)
Q Consensus 135 ~~~dg~~l~~~~--------------------~~~l~~~d~~~~~~~~~l~~~~~-~~~~~--~~~SpDg~~la~~~~-- 189 (776)
|++.++.+. ...|++||+++++....+..+.. ..... +.|+|||+.+..+..
T Consensus 198 ---~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~ 274 (462)
T 2ece_A 198 ---PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVS 274 (462)
T ss_dssp ---TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEE
T ss_pred ---CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeee
Confidence 999887773 57899999998866544444321 11222 345999997555443
Q ss_pred -----CcEEEEecCCCce
Q 004067 190 -----CELHVLNLLINEQ 202 (776)
Q Consensus 190 -----~~l~~~~l~~g~~ 202 (776)
++|+++..++|+.
T Consensus 275 ~~~Lss~V~v~~~d~g~~ 292 (462)
T 2ece_A 275 LKDLSSSIWLWFYEDGKW 292 (462)
T ss_dssp TTTCCEEEEEEEEETTEE
T ss_pred ccCCCceEEEEEecCCce
Confidence 3677766665643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=8.5e-07 Score=95.17 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=95.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCC-----ce-E---EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTC-----KQ-E---LVFSPPDGGLDENNISPEEKLRRERLRERGLGV 127 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~-----~~-~---~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (776)
+..++|||||++||.... .+.....|.+||+.++ +. + .+.... .+...+
T Consensus 95 v~~l~~spdg~~lav~~~-sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~---------------------~h~~~V 152 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMM-SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK---------------------DAGGMV 152 (434)
T ss_dssp EEEEEECTTSCEEEEEEE-ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC---------------------SGGGSE
T ss_pred ccEEEEcCCCCEEEEEEe-ccCCCceEEEEEccccccCCcCCcceeeeeeccC---------------------CCCCce
Confidence 578899999999985311 0111357999998764 11 0 111100 012468
Q ss_pred eeEEEeecCCC-ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE
Q 004067 128 TRYEWVKTSSK-KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ 204 (776)
Q Consensus 128 ~~~~~sp~~~d-g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~ 204 (776)
....|+| + ++.|+.. .++.|++||+.++... .........+..++|||||+.|+.... +.|.+|++.+...+.
T Consensus 153 ~~v~~~p---~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~ 228 (434)
T 2oit_A 153 IDMKWNP---TVPSMVAVCLADGSIAVLQVTETVKV-CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKV 228 (434)
T ss_dssp EEEEECS---SCTTEEEEEETTSCEEEEEESSSEEE-EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEE
T ss_pred EEEEECC---CCCCEEEEEECCCeEEEEEcCCCcce-eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCccccc
Confidence 8999999 8 6777754 7899999999988544 211111224788999999999998875 579999998333333
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
+...... .. ++...+..+.|++++..++...
T Consensus 229 ~~~~~~~---~~--------~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 229 IPCPPFY---ES--------DHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp ECCCTTC---CT--------TSCEEEEEEEEEETTEEEEEEE
T ss_pred ccCCccc---CC--------CCceeEEEEEEecCceEEEEEc
Confidence 3211110 00 0001245788999988776544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-05 Score=78.56 Aligned_cols=220 Identities=10% Similarity=0.016 Sum_probs=133.2
Q ss_pred eEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCC--
Q 004067 82 KVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSC-- 157 (776)
Q Consensus 82 ~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~-- 157 (776)
.|.++++++++...+... ......+.|++ +++.|+++ ..+.|+++++++
T Consensus 11 ~I~~i~~~~~~~~~~~~~------------------------~~~p~g~~~d~---~~~~ly~~D~~~~~I~~~~~~g~~ 63 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPN------------------------LRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAH 63 (316)
T ss_dssp SEEEEETTSCCCEEEECS------------------------CSSEEEEEEET---TTTEEEEEETTTTEEEEEEC----
T ss_pred eEEEEECCCcceEehhcC------------------------CCceEEEEEEe---CCCEEEEEECCCCcEEEEECCCCC
Confidence 499999998876655531 13567889999 88889887 457899999987
Q ss_pred --CccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceE
Q 004067 158 --SKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGY 233 (776)
Q Consensus 158 --~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (776)
.... .+..........+++.+.+..|.++.. +.|.++++++...+.+..... ....++
T Consensus 64 ~~~~~~-~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-----------------~~P~~i 125 (316)
T 1ijq_A 64 GVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-----------------SKPRAI 125 (316)
T ss_dssp ----CE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT-----------------CCEEEE
T ss_pred CCcccE-EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC-----------------CCcceE
Confidence 3333 222211112456788887777766643 468888888766655543221 113477
Q ss_pred EECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCc
Q 004067 234 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDE 313 (776)
Q Consensus 234 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 313 (776)
+..|+++.|++..... ...|+++++++...+.+-. ...
T Consensus 126 avdp~~g~ly~~d~~~----------------------------------~~~I~~~~~dG~~~~~~~~--------~~~ 163 (316)
T 1ijq_A 126 VVDPVHGFMYWTDWGT----------------------------------PAKIKKGGLNGVDIYSLVT--------ENI 163 (316)
T ss_dssp EEETTTTEEEEEECSS----------------------------------SCEEEEEETTSCCEEEEEC--------SSC
T ss_pred EeCCCCCEEEEEccCC----------------------------------CCeEEEEcCCCCCeEEEEE--------CCC
Confidence 8999888887654210 0357888888766555421 122
Q ss_pred ceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCce
Q 004067 314 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR 393 (776)
Q Consensus 314 ~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 393 (776)
..-..++|+|+++.|+++.. ....|+.+|+++...+.+...... . ..+.+++.+++.+||+....+
T Consensus 164 ~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~~~~~~~~~~-~--------~~P~giav~~~~ly~~d~~~~-- 229 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKR-L--------AHPFSLAVFEDKVFWTDIINE-- 229 (316)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTT-T--------SSEEEEEEETTEEEEEETTTT--
T ss_pred CCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCceEEEeecCCc-c--------CCcEEEEEECCEEEEEECCCC--
Confidence 34567999998887776642 234699999987766666543111 0 011222334455555443333
Q ss_pred EEEEEeCCC
Q 004067 394 HLYLHDING 402 (776)
Q Consensus 394 ~l~~~~~~g 402 (776)
.|++++..+
T Consensus 230 ~V~~~~~~~ 238 (316)
T 1ijq_A 230 AIFSANRLT 238 (316)
T ss_dssp EEEEEETTT
T ss_pred eEEEEeCCC
Confidence 788888643
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=6.5e-06 Score=84.77 Aligned_cols=256 Identities=13% Similarity=0.043 Sum_probs=134.4
Q ss_pred CCeeeEEEeecCCCceEEEEeCCC-------------------------cEEEEeCCCCccceecCCCCCCCccCceeCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPD-------------------------GIYFQDLSCSKPELKLSSSSCSPVIDPHLSS 179 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~-------------------------~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp 179 (776)
..+..++++| ||+.++....+ .|+++|.++++...............++++|
T Consensus 24 ~~v~~va~d~---~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 24 GQVSGVALDS---KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp SCEEEEEECT---TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred CCceEEEECC---CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 3577889999 99877665443 6999999888766233222222356689999
Q ss_pred CCCEEEEEEC--CcEEEEecCCCc--eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeE
Q 004067 180 DGTMIAFVRD--CELHVLNLLINE--QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRF 255 (776)
Q Consensus 180 Dg~~la~~~~--~~l~~~~l~~g~--~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 255 (776)
||+ |.+... +.|+++++++.. ...+...+.. +. ....+.....++++|++..|++.....
T Consensus 101 ~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~-----g~----~~~~~~~P~~ia~~~~~g~lyv~d~~~------ 164 (329)
T 3fvz_A 101 DGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQP-----GS----DQNHFCQPTDVAVEPSTGAVFVSDGYC------ 164 (329)
T ss_dssp TSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----CC----STTCCSSEEEEEECTTTCCEEEEECSS------
T ss_pred CCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----CC----CccccCCCcEEEEeCCCCeEEEEeCCC------
Confidence 999 333332 469999987663 3333211100 00 011122245789999544465543100
Q ss_pred EEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCC-CCCCCCcceEEEEEeccCCeEEEEEEee
Q 004067 256 RIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNR 334 (776)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 334 (776)
...|++|+.++.....+...... ............++++||+..|+++. .
T Consensus 165 ----------------------------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d-~ 215 (329)
T 3fvz_A 165 ----------------------------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD-R 215 (329)
T ss_dssp ----------------------------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE-T
T ss_pred ----------------------------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE-C
Confidence 03467787655544444221000 00011223467899999944454443 2
Q ss_pred cCceEEEEEEECCCCceEEEEEecc-CceeecccccccCCCCccccCCeEEEEecc------CCceEEEEEeCCCceeec
Q 004067 335 SQTKLKVLKFDIKTGQRKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGGFIWASEK------TGFRHLYLHDINGTCLGP 407 (776)
Q Consensus 335 ~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------~g~~~l~~~~~~g~~~~~ 407 (776)
....|.+||+++|+......... .... + .+.+.+ ++++.++. .+...+++|+..+++...
T Consensus 216 --~~~~I~~~~~~~G~~~~~~~~~~~~~~~-----~-----~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 216 --ENGRIQCFKTDTKEFVREIKHASFGRNV-----F-----AISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp --TTTEEEEEETTTCCEEEEECCTTTTTCE-----E-----EEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEE
T ss_pred --CCCEEEEEECCCCcEEEEEeccccCCCc-----c-----eeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE
Confidence 23469999999776544332111 0000 0 011122 23333322 123488999976665433
Q ss_pred -cc---cCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 408 -IT---EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 408 -lt---~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+. ........+ .+++|| .||+....++ .|+.+++
T Consensus 283 ~~~~~~~~~~~p~~i-a~~~dG-~lyvad~~~~----~I~~~~~ 320 (329)
T 3fvz_A 283 VFKPVRKHFDMPHDI-VASEDG-TVYIGDAHTN----TVWKFTL 320 (329)
T ss_dssp EECCSSSCCSSEEEE-EECTTS-EEEEEESSSC----CEEEEEE
T ss_pred EEcCCCCccCCeeEE-EECCCC-CEEEEECCCC----EEEEEeC
Confidence 32 122223444 489999 6788776554 3444444
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-05 Score=75.63 Aligned_cols=272 Identities=13% Similarity=0.078 Sum_probs=150.7
Q ss_pred CeeeEEEeecCCCceEEEEeC-CCcEEEEeCCCCccceecC-CCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCce
Q 004067 126 GVTRYEWVKTSSKKKIIMVPL-PDGIYFQDLSCSKPELKLS-SSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQ 202 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~ 202 (776)
.+..+.+++ ||+..+... ++.|+++|.. ++.. .+. .........+.++|||+..+... .+.|++++.+ ++.
T Consensus 16 ~~~~i~~d~---~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 16 GPYGITVSD---KGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII 89 (299)
T ss_dssp CEEEEEECT---TSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CccceEECC---CCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence 466788888 998555544 5679999998 5554 332 11222366788999997443333 3469999987 555
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+.+...... .....++++|||+ |++.....
T Consensus 90 ~~~~~~~~~----------------~~~~~i~~~~~g~-l~v~~~~~--------------------------------- 119 (299)
T 2z2n_A 90 KEYTLPNPD----------------SAPYGITEGPNGD-IWFTEMNG--------------------------------- 119 (299)
T ss_dssp EEEECSSTT----------------CCEEEEEECTTSC-EEEEETTT---------------------------------
T ss_pred EEEeCCCcC----------------CCceeeEECCCCC-EEEEecCC---------------------------------
Confidence 444321110 0134677889886 54433111
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCce
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
..|+++|. +++...+.. .........+.+++||+.+ +... ....|+++|+ +++...+........
T Consensus 120 --~~i~~~d~-~g~~~~~~~-------~~~~~~~~~i~~~~~g~l~-v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~~ 184 (299)
T 2z2n_A 120 --NRIGRITD-DGKIREYEL-------PNKGSYPSFITLGSDNALW-FTEN---QNNAIGRITE-SGDITEFKIPTPASG 184 (299)
T ss_dssp --TEEEEECT-TCCEEEEEC-------SSTTCCEEEEEECTTSCEE-EEET---TTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred --ceEEEECC-CCCEEEecC-------CCCCCCCceEEEcCCCCEE-EEeC---CCCEEEEEcC-CCcEEEeeCCCCCCc
Confidence 24678888 555555433 1223456788999999743 3321 2346999999 777655421111100
Q ss_pred eecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCceeecccc--CCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 363 VNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITE--GDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~--~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
| ..+..++ +.+++.....+ .|+++++ +++...+.. ....+..+ .++++|+ +|+.....
T Consensus 185 --------~--~~i~~~~~g~l~v~~~~~~--~i~~~~~-~g~~~~~~~~~~~~~~~~i-~~~~~g~-l~v~~~~~---- 245 (299)
T 2z2n_A 185 --------P--VGITKGNDDALWFVEIIGN--KIGRITT-SGEITEFKIPTPNARPHAI-TAGAGID-LWFTEWGA---- 245 (299)
T ss_dssp --------E--EEEEECTTSSEEEEETTTT--EEEEECT-TCCEEEEECSSTTCCEEEE-EECSTTC-EEEEETTT----
T ss_pred --------c--eeEEECCCCCEEEEccCCc--eEEEECC-CCcEEEEECCCCCCCceeE-EECCCCC-EEEeccCC----
Confidence 0 1122333 34544443344 8999999 444443322 22334444 3788887 66665433
Q ss_pred eeEEEEEeCCCCCCccccceeec--C-CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLT--N-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~--~-~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
..|+.++. .| ....+. . ......+.+ ++|+.++-.. + ..+.+++..++
T Consensus 246 ~~i~~~d~--~g-----~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~----~~l~~~~~~~~ 296 (299)
T 2z2n_A 246 NKIGRLTS--NN-----IIEEYPIQIKSAEPHGICF-DGETIWFAME-C----DKIGKLTLIKD 296 (299)
T ss_dssp TEEEEEET--TT-----EEEEEECSSSSCCEEEEEE-CSSCEEEEET-T----TEEEEEEEC--
T ss_pred ceEEEECC--CC-----ceEEEeCCCCCCccceEEe-cCCCEEEEec-C----CcEEEEEcCcc
Confidence 35777776 33 233332 1 123566777 8886544332 1 46888876544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.9e-06 Score=84.51 Aligned_cols=232 Identities=10% Similarity=0.035 Sum_probs=127.7
Q ss_pred CeeeEEEeecCCCceEEEE-e--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMV-P--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~-~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~ 201 (776)
....+.+++ ||+ |++ . .++.|+++|..++... .+..........+.++|||+ |.+.. ++.|++++.+++.
T Consensus 25 ~p~~i~~~~---~g~-l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDS---AGN-VYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECT---TCC-EEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSC
T ss_pred CccceEECC---CCC-EEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCce
Confidence 455778899 998 555 4 5678999998776655 43322222467789999998 33333 4579999988776
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.+.+...+. ....+++++|||+ |++.....
T Consensus 99 ~~~~~~~~~-----------------~~p~~i~~~~~g~-l~v~~~~~-------------------------------- 128 (270)
T 1rwi_B 99 QTVLPFDGL-----------------NYPEGLAVDTQGA-VYVADRGN-------------------------------- 128 (270)
T ss_dssp CEECCCCSC-----------------SSEEEEEECTTCC-EEEEEGGG--------------------------------
T ss_pred EeeeecCCc-----------------CCCcceEECCCCC-EEEEECCC--------------------------------
Confidence 554422111 0134778999997 54433211
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCc
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 361 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 361 (776)
..|++++..+....... .........++++|||+ +++.. . ....|+++|++++..........
T Consensus 129 ---~~i~~~~~~~~~~~~~~--------~~~~~~p~~i~~~~~g~-l~v~~-~--~~~~i~~~~~~~~~~~~~~~~~~-- 191 (270)
T 1rwi_B 129 ---NRVVKLAAGSKTQTVLP--------FTGLNDPDGVAVDNSGN-VYVTD-T--DNNRVVKLEAESNNQVVLPFTDI-- 191 (270)
T ss_dssp ---TEEEEECTTCCSCEECC--------CCSCCSCCCEEECTTCC-EEEEE-G--GGTEEEEECTTTCCEEECCCSSC--
T ss_pred ---CEEEEEECCCceeEeec--------cccCCCceeEEEeCCCC-EEEEE-C--CCCEEEEEecCCCceEeecccCC--
Confidence 23566654444332221 11122345688999997 44433 2 23469999998766443211100
Q ss_pred eeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCceeeccccCC-eEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 362 WVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~~~~lt~~~-~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
..+.++..++++.+|+++ .++ .|++++.++.....+.... .....+ .++++|+ ||+....++
T Consensus 192 ---------~~p~~i~~d~~g~l~v~~~~~~--~v~~~~~~~~~~~~~~~~~~~~p~~i-~~~~~g~-l~v~~~~~~--- 255 (270)
T 1rwi_B 192 ---------TAPWGIAVDEAGTVYVTEHNTN--QVVKLLAGSTTSTVLPFTGLNTPLAV-AVDSDRT-VYVADRGND--- 255 (270)
T ss_dssp ---------CSEEEEEECTTCCEEEEETTTS--CEEEECTTCSCCEECCCCSCSCEEEE-EECTTCC-EEEEEGGGT---
T ss_pred ---------CCceEEEECCCCCEEEEECCCC--cEEEEcCCCCcceeeccCCCCCceeE-EECCCCC-EEEEECCCC---
Confidence 011122334444444443 344 7999999887654443322 234444 4889987 777766543
Q ss_pred eeEEEEEe
Q 004067 440 SHLYCAKL 447 (776)
Q Consensus 440 ~~l~~~~~ 447 (776)
.|..+++
T Consensus 256 -~v~~~~~ 262 (270)
T 1rwi_B 256 -RVVKLTS 262 (270)
T ss_dssp -EEEEECC
T ss_pred -EEEEEcC
Confidence 4555554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-05 Score=83.99 Aligned_cols=250 Identities=7% Similarity=-0.061 Sum_probs=139.1
Q ss_pred CeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-C--cEEEEecCCC
Q 004067 126 GVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-C--ELHVLNLLIN 200 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~--~l~~~~l~~g 200 (776)
....+.|++ ||+ |++. .+..|+++|++++... .+..... ... +.|+|+|+.|+.... . .|++++..++
T Consensus 132 ~P~~la~d~---~g~-lyv~d~~~~~I~~id~~~g~~~-~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 132 YMWGIAAVG---NNT-VLAYQRDDPRVRLISVDDNKVT-TVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CEEEEEECS---TTE-EEEEETTTTEEEEEETTTTEEE-EEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CceEEEEeC---CCC-EEEEecCCCcEEEEECCCCEEE-EeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 456788999 998 5554 3467999999998877 4433222 234 999999997766654 2 6999999877
Q ss_pred cee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 EQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
... .+...... .......++++|++..|++ ... .
T Consensus 205 ~~~~~~g~~~~~--------------~~~~p~~iav~p~~g~lyv-~d~-~----------------------------- 239 (409)
T 3hrp_A 205 WAPTRIGQLGST--------------FSGKIGAVALDETEEWLYF-VDS-N----------------------------- 239 (409)
T ss_dssp TCEEEEEECCTT--------------SCSCCCBCEECTTSSEEEE-ECT-T-----------------------------
T ss_pred ceeEEeeeccch--------------hcCCcEEEEEeCCCCeEEE-EEC-C-----------------------------
Confidence 642 33111000 0111346789997777776 321 1
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceE-E-EEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYL-A-RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..|+++|.+++....+..... ....... . .++|+|++..|+++. . ....|++++.++. ...+...
T Consensus 240 -----~~I~~~d~~~~~~~~~~~~~~----~g~~~~~P~~~ia~~p~~g~lyv~d-~--~~~~I~~~~~~g~-~~~~~g~ 306 (409)
T 3hrp_A 240 -----KNFGRFNVKTQEVTLIKQLEL----SGSLGTNPGPYLIYYFVDSNFYMSD-Q--NLSSVYKITPDGE-CEWFCGS 306 (409)
T ss_dssp -----CEEEEEETTTCCEEEEEECCC----CSCCCCSSCCEEEEETTTTEEEEEE-T--TTTEEEEECTTCC-EEEEEEC
T ss_pred -----CcEEEEECCCCCEEEEecccc----cCCCCCCccccEEEeCCCCEEEEEe-C--CCCEEEEEecCCC-EEEEEeC
Confidence 357899998887655421100 1111111 2 789999655555543 2 2346999998754 4444443
Q ss_pred c-cCceeecc---cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccC--------------Ce-EEEEE
Q 004067 358 E-LDSWVNLH---DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG--------------DW-MVEQI 418 (776)
Q Consensus 358 ~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~--------------~~-~~~~~ 418 (776)
. ...+.+.. ..|. .+.+++.++++-+|+++..+...|+++++.++....+... .+ ....+
T Consensus 307 ~~~~g~~dg~~~~~~~~-~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~gi 385 (409)
T 3hrp_A 307 ATQKTVQDGLREEALFA-QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDI 385 (409)
T ss_dssp TTCCSCBCEEGGGCBCS-SEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEE
T ss_pred CCCCCcCCCcccccEeC-CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEE
Confidence 2 11221110 0111 1223444544445555542445899999666665544332 01 12333
Q ss_pred EeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 419 VGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 419 ~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.++++| .||+..... ..|+++.+
T Consensus 386 -avd~~g-~lyVad~~n----~~Ir~i~~ 408 (409)
T 3hrp_A 386 -CYDGEG-GYWIAEAWG----KAIRKYAV 408 (409)
T ss_dssp -EECSSS-EEEEEESTT----CEEEEEEE
T ss_pred -EEcCCC-CEEEEECCC----CeEEEEEe
Confidence 478885 466665543 24665554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-05 Score=80.83 Aligned_cols=236 Identities=11% Similarity=0.058 Sum_probs=139.0
Q ss_pred CCEEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeec
Q 004067 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQ 260 (776)
Q Consensus 181 g~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 260 (776)
...|+|.....|+.+++++.....+...... ..+++|.++++.|++.....
T Consensus 44 ~~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~------------------~~~l~~d~~~~~ly~~D~~~----------- 94 (349)
T 3v64_C 44 EPVLLFANRIDIRQVLPHRSEYTLLLNNLEN------------------AIALDFHHRRELVFWSDVTL----------- 94 (349)
T ss_dssp CCEEEEECBSCEEEECTTSCCEEEEECSCSC------------------EEEEEEETTTTEEEEEETTT-----------
T ss_pred CceeEeecccceEEEeCCCCeeEEeecCCCc------------------eEEEEEeccccEEEEEeccC-----------
Confidence 3467777778899999988777666543221 34788999888887764221
Q ss_pred CCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEE
Q 004067 261 GKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLK 340 (776)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 340 (776)
..|+.++++++....+.. ........+++.+.+..|+++.. ....
T Consensus 95 ------------------------~~I~r~~~~g~~~~~~~~--------~~~~~p~glavd~~~g~ly~~d~---~~~~ 139 (349)
T 3v64_C 95 ------------------------DRILRANLNGSNVEEVVS--------TGLESPGGLAVDWVHDKLYWTDS---GTSR 139 (349)
T ss_dssp ------------------------TEEEEEETTSCSCEEEEC--------SSCSCCCEEEEETTTTEEEEEET---TTTE
T ss_pred ------------------------CceEEEecCCCCceEEEe--------CCCCCccEEEEecCCCeEEEEcC---CCCe
Confidence 347888888877555422 11122345788876666666542 2336
Q ss_pred EEEEECCCCceEEEEEeccCceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEE
Q 004067 341 VLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIV 419 (776)
Q Consensus 341 l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~ 419 (776)
|+++++++...+.+...... .| .+++.++ ++.+|.++......|++++++|...+.+.........-+
T Consensus 140 I~~~~~dG~~~~~l~~~~l~---------~P--~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl 208 (349)
T 3v64_C 140 IEVANLDGAHRKVLLWQSLE---------KP--RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL 208 (349)
T ss_dssp EEEEETTSCSCEEEECTTCS---------CE--EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred EEEEcCCCCceEEEEeCCCC---------Cc--ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence 99999987766555432110 01 1112232 334455544334699999999987666644332222234
Q ss_pred eecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec-CC-CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 420 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-NG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~-~~-~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
.++++++.||+..... ..|+++++ +|. ..+.+. .. .....+++ ++..|.++-... ..|.+++.
T Consensus 209 a~d~~~~~lY~aD~~~----~~I~~~~~--dG~----~~~~~~~~~~~~P~giav--~~~~ly~td~~~---~~V~~~~~ 273 (349)
T 3v64_C 209 TIDYAGRRMYWVDAKH----HVIERANL--DGS----HRKAVISQGLPHPFAITV--FEDSLYWTDWHT---KSINSANK 273 (349)
T ss_dssp EEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEECSSCSSEEEEEE--ETTEEEEEETTT---TEEEEEET
T ss_pred EEeCCCCEEEEEECCC----CEEEEEeC--CCC----ceEEEEeCCCCCceEEEE--ECCEEEEecCCC---CeEEEEEc
Confidence 5999899999987654 37899998 554 223322 22 23445666 333455543322 36777775
Q ss_pred CCCceeEee
Q 004067 498 QDGSLVLPL 506 (776)
Q Consensus 498 ~~~~~~~~l 506 (776)
.+|+..+.+
T Consensus 274 ~~G~~~~~i 282 (349)
T 3v64_C 274 FTGKNQEII 282 (349)
T ss_dssp TTCCSCEEE
T ss_pred cCCCccEEe
Confidence 566544443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-05 Score=81.75 Aligned_cols=228 Identities=10% Similarity=0.042 Sum_probs=139.4
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCC
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCS 158 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~ 158 (776)
..|+++++++.+...+... ......+.|++ .+..|+++ ..+.|+++++++.
T Consensus 92 ~~I~~i~l~~~~~~~~~~~------------------------~~~~~~l~~d~---~~~~lywsD~~~~~I~~~~~~g~ 144 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPN------------------------LRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRA 144 (400)
T ss_dssp TEEEEECTTSCSCEEEECS------------------------CSCEEEEEEET---TTTEEEEEETTTTEEEEEEC---
T ss_pred ceeEEEccCCcceeEeccc------------------------cCcceEEeeee---ccCceEEEecCCCeEEEEEcccC
Confidence 3699999998877666531 13567889999 88889987 5577999999873
Q ss_pred ----ccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcce
Q 004067 159 ----KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTG 232 (776)
Q Consensus 159 ----~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (776)
... .+..........+++.+.+..|.++.. +.|++++++++..+.+...... ...+
T Consensus 145 ~~~~~~~-~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~-----------------~P~~ 206 (400)
T 3p5b_L 145 HGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----------------KPRA 206 (400)
T ss_dssp ---CCCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC-----------------CEEE
T ss_pred CCCCcce-EEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC-----------------Ccce
Confidence 233 222211122455677777777766653 4688888887766655543211 1347
Q ss_pred EEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCC
Q 004067 233 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYD 312 (776)
Q Consensus 233 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 312 (776)
++..|.+..|++...... ..|++.++++...+.+-. ..
T Consensus 207 iavdp~~g~ly~td~~~~----------------------------------~~I~~~~~dG~~~~~~~~--------~~ 244 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTP----------------------------------AKIKKGGLNGVDIYSLVT--------EN 244 (400)
T ss_dssp EEEETTTTEEEEEECSSS----------------------------------CCEEEEETTSCSCEEEEC--------SS
T ss_pred EEEecccCeEEEEeCCCC----------------------------------CEEEEEeCCCCccEEEEE--------CC
Confidence 789998887876542110 237888888776655522 12
Q ss_pred cceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCc
Q 004067 313 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF 392 (776)
Q Consensus 313 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~ 392 (776)
...-..++++|+++.|+++.. ....|+.+|++++..+.+...... + +.+.+++.+.+.+||+....+
T Consensus 245 l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-l--------~~P~gl~v~~~~lywtd~~~~- 311 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKR-L--------AHPFSLAVFEDKVFWTDIINE- 311 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECSST-T--------SSEEEEEEETTEEEEEESSSC-
T ss_pred CCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCCCC-C--------CCCEEEEEeCCEEEEecCCCC-
Confidence 234567999998887777642 234699999988777776543211 1 111122334555666553333
Q ss_pred eEEEEEe-CCCceeeccc
Q 004067 393 RHLYLHD-INGTCLGPIT 409 (776)
Q Consensus 393 ~~l~~~~-~~g~~~~~lt 409 (776)
.|++++ .+|...+.|.
T Consensus 312 -~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 312 -AIFSANRLTGSDVNLLA 328 (400)
T ss_dssp -SEEEEESSSCCCCEEEE
T ss_pred -eEEEEEcCCCCceEEEe
Confidence 788888 4454444444
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-05 Score=78.06 Aligned_cols=272 Identities=13% Similarity=0.032 Sum_probs=149.0
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+..+.+++||+ |.+..... ..|++++++ ++...+..... ...+....+++
T Consensus 21 ~p~~i~~d~~g~-l~v~~~~~----~~v~~~~~~-~~~~~~~~~~~----------------------~~~~~~i~~~~- 71 (300)
T 2qc5_A 21 GPYGITSSEDGK-VWFTQHKA----NKISSLDQS-GRIKEFEVPTP----------------------DAKVMCLIVSS- 71 (300)
T ss_dssp CEEEEEECTTSC-EEEEETTT----TEEEEECTT-SCEEEEECSST----------------------TCCEEEEEECT-
T ss_pred CcceeeECCCCC-EEEEcCCC----CeEEEECCC-CceEEEECCCC----------------------CCcceeEEECC-
Confidence 457888999998 43333222 469999998 66554431100 13466778888
Q ss_pred CCCceEEEEeC-CCcEEEEeCCCCccceecCC-CCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCC
Q 004067 136 SSKKKIIMVPL-PDGIYFQDLSCSKPELKLSS-SSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 136 ~~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
+|+..+... ++.|+++|.+ ++.+ .+.. ........+.++|+|+..+-.. .+.|++++.+ |+.+.+......
T Consensus 72 --~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~- 145 (300)
T 2qc5_A 72 --LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKG- 145 (300)
T ss_dssp --TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTT-
T ss_pred --CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCC-
Confidence 998554443 4679999988 4444 3321 1122356778889987433322 3469999988 666554322110
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
.....+.+.|||+ |++..... ..|+++|.
T Consensus 146 ---------------~~~~~i~~d~~g~-l~v~~~~~-----------------------------------~~i~~~~~ 174 (300)
T 2qc5_A 146 ---------------SYPAFITLGSDNA-LWFTENQN-----------------------------------NSIGRITN 174 (300)
T ss_dssp ---------------CCEEEEEECTTSS-EEEEETTT-----------------------------------TEEEEECT
T ss_pred ---------------CCceeEEECCCCC-EEEEecCC-----------------------------------CeEEEECC
Confidence 0134677899998 55443211 24677887
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccC
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 372 (776)
+++...+.. .........+.+++||++ ++... ....|+++|+ ++....+....... .
T Consensus 175 -~g~~~~~~~-------~~~~~~~~~i~~d~~g~l-~v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~----------~ 231 (300)
T 2qc5_A 175 -TGKLEEYPL-------PTNAAAPVGITSGNDGAL-WFVEI---MGNKIGRITT-TGEISEYDIPTPNA----------R 231 (300)
T ss_dssp -TCCEEEEEC-------SSTTCCEEEEEECTTSSE-EEEET---TTTEEEEECT-TCCEEEEECSSTTC----------C
T ss_pred -CCcEEEeeC-------CCCCCCcceEEECCCCCE-EEEcc---CCCEEEEEcC-CCcEEEEECCCCCC----------C
Confidence 555555433 222345678899999973 33321 2235899998 55554432111000 0
Q ss_pred CCCccccCCeEEEEec-cCCceEEEEEeCCCceeecc--ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 373 DKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~~~~l--t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+..+..++++-+|+++ ..+ .|+++++++ ....+ ......+..+. ++++|+ ||+... . .|++++.
T Consensus 232 ~~~i~~d~~g~l~v~~~~~~--~i~~~~~~g-~~~~~~~~~~~~~~~~i~-~~~~g~-l~v~~~-~-----~i~~~~p 298 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWGAN--QIGRITNDN-TIQEYQLQTENAEPHGIT-FGKDGS-VWFALK-C-----KIGKLNL 298 (300)
T ss_dssp EEEEEECSTTCEEEEETTTT--EEEEECTTS-CEEEEECCSTTCCCCCEE-ECTTSC-EEEECS-S-----EEEEEEE
T ss_pred ceEEEECCCCCEEEeccCCC--eEEEECCCC-cEEEEECCccCCccceeE-eCCCCC-EEEEcc-C-----ceEEeCC
Confidence 0112233333344443 334 799999854 33333 21122233333 677877 566543 1 3555554
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=104.01 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=82.6
Q ss_pred EEEEEEcCCCCCC--CCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCC----CCCchhhhhh
Q 004067 537 LYGALYKPDESRY--GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGT----ARRGLKFEAS 609 (776)
Q Consensus 537 l~~~~~~P~~~~~--~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~----g~~~~~~~~~ 609 (776)
+...+|.|..... ..+++|+||++|||+........+ . ...|++ .+++|+++|||-. ...+.
T Consensus 112 L~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~----~--~~~la~~~~~vvv~~~YRl~~~Gfl~~~~----- 180 (574)
T 3bix_A 112 LYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLY----D--GSVLASYGNVIVITVNYRLGVLGFLSTGD----- 180 (574)
T ss_dssp CEEEEEEEC--------CCEEEEEECCCSSSSSCCGGGS----C--CHHHHHHHTCEEEEECCCCHHHHHCCCSS-----
T ss_pred CEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCcc----C--chhhhccCCEEEEEeCCcCcccccCcCCC-----
Confidence 6677888865311 125789999999986543322222 1 234554 4799999999932 11110
Q ss_pred hhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEcCCC
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPV 672 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~~~~ 672 (776)
....+...+.|+..+++|+.++ ...|+++|.|+|+|.||.+++.++.... .+|+++|+.++.
T Consensus 181 -~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 181 -QAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp -SSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 0111233488999999999885 3469999999999999999998887543 568898887753
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-05 Score=84.26 Aligned_cols=236 Identities=11% Similarity=0.063 Sum_probs=140.3
Q ss_pred CCEEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeec
Q 004067 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQ 260 (776)
Q Consensus 181 g~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 260 (776)
...|+|...+.|+.++++++....+...... ..+++|.++++.|++.....
T Consensus 87 ~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~------------------~~gl~~d~~~~~ly~~D~~~----------- 137 (386)
T 3v65_B 87 EPVLLFANRIDIRQVLPHRSEYTLLLNNLEN------------------AIALDFHHRRELVFWSDVTL----------- 137 (386)
T ss_dssp CCEEEEECBSCEEEECTTSCCCEEEECSCSC------------------EEEEEEETTTTEEEEEETTT-----------
T ss_pred cceeEeecCccceeeccCCCcEEEEecCCCc------------------cEEEEEecCCCeEEEEeCCC-----------
Confidence 3467777778899999998877766543321 34788999888887764221
Q ss_pred CCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEE
Q 004067 261 GKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLK 340 (776)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 340 (776)
..|+.++++++....+... .......+++.+.+..|+++.. . ...
T Consensus 138 ------------------------~~I~r~~~~g~~~~~~~~~--------~~~~p~glavd~~~g~lY~~d~-~--~~~ 182 (386)
T 3v65_B 138 ------------------------DRILRANLNGSNVEEVVST--------GLESPGGLAVDWVHDKLYWTDS-G--TSR 182 (386)
T ss_dssp ------------------------TEEEEEETTSCCEEEEECS--------SCSCCCCEEEETTTTEEEEEET-T--TTE
T ss_pred ------------------------CcEEEEecCCCCcEEEEeC--------CCCCccEEEEEeCCCeEEEEcC-C--CCe
Confidence 3578889888776554221 1112234778876666666542 2 236
Q ss_pred EEEEECCCCceEEEEEeccCceeecccccccCCCCcccc-CCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEE
Q 004067 341 VLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIV 419 (776)
Q Consensus 341 l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~ 419 (776)
|+++++++...+.+...... .| .+++.+ .++.+|.++......|++++++|...+.+.........-+
T Consensus 183 I~~~~~dg~~~~~l~~~~l~---------~P--~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl 251 (386)
T 3v65_B 183 IEVANLDGAHRKVLLWQSLE---------KP--RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL 251 (386)
T ss_dssp EEECBTTSCSCEEEECSSCS---------CE--EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred EEEEeCCCCceEEeecCCCC---------CC--cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeE
Confidence 88999987766555432110 01 111222 2334455554334699999999887666644332222234
Q ss_pred eecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC-C-CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 420 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-G-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
.++++++.||+..... ..|+++++ +|. ..+.+.. . .....+++ ++..|.++-.. ...|.+++.
T Consensus 252 avd~~~~~lY~aD~~~----~~I~~~d~--dG~----~~~~~~~~~~~~P~giav--~~~~ly~td~~---~~~V~~~~~ 316 (386)
T 3v65_B 252 TIDYAGRRMYWVDAKH----HVIERANL--DGS----HRKAVISQGLPHPFAITV--FEDSLYWTDWH---TKSINSANK 316 (386)
T ss_dssp EEEGGGTEEEEEETTT----TEEEEECT--TSC----SCEEEECSSCSSEEEEEE--ETTEEEEEETT---TTEEEEEET
T ss_pred EEeCCCCEEEEEECCC----CEEEEEeC--CCC----eeEEEEECCCCCceEEEE--ECCEEEEeeCC---CCeEEEEEC
Confidence 5898899999997654 37899988 554 2233322 2 23455666 33455555432 246888875
Q ss_pred CCCceeEee
Q 004067 498 QDGSLVLPL 506 (776)
Q Consensus 498 ~~~~~~~~l 506 (776)
.+|+..+.+
T Consensus 317 ~~G~~~~~i 325 (386)
T 3v65_B 317 FTGKNQEII 325 (386)
T ss_dssp TTCCSCEEE
T ss_pred CCCcceEEE
Confidence 566654444
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.8e-08 Score=99.18 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=62.7
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|.|+++||.+++.. .|..++..|. +.|+++|+++... ...++++.+.+..++..
T Consensus 23 ~~~~l~~~hg~~~~~~-------~~~~~~~~L~---~~v~~~d~~~~~~--------------~~~~~~~a~~~~~~i~~ 78 (283)
T 3tjm_A 23 SERPLFLVHPIEGSTT-------VFHSLASRLS---IPTYGLQCTRAAP--------------LDSIHSLAAYYIDCIRQ 78 (283)
T ss_dssp SSCCEEEECCTTCCSG-------GGHHHHHHCS---SCEEEECCCTTSC--------------CSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHH-------HHHHHHHhcC---ceEEEEecCCCCC--------------CCCHHHHHHHHHHHHHH
Confidence 3467899999876643 3444455554 9999999964211 11244444443333332
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhC---CCceE---EEEEcCCCC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQ---CAVSGAPVT 673 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~---~~~~~---~~v~~~~~~ 673 (776)
.. ...++.++||||||.+|+.+|.+. ++.+. .++++++..
T Consensus 79 ~~-~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~~ 124 (283)
T 3tjm_A 79 VQ-PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSP 124 (283)
T ss_dssp TC-CSSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCCT
T ss_pred hC-CCCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCCc
Confidence 21 236899999999999999999864 77777 888777654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-05 Score=81.28 Aligned_cols=235 Identities=11% Similarity=0.023 Sum_probs=138.5
Q ss_pred CEEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecC
Q 004067 182 TMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQG 261 (776)
Q Consensus 182 ~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 261 (776)
..|+|.....|+.++++++....+...... ..+++|+++++.|++.....
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~------------------~~~l~~d~~~~~lywsD~~~------------ 133 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRN------------------VVALDTEVASNRIYWSDLSQ------------ 133 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEECSCSC------------------EEEEEEETTTTEEEEEETTT------------
T ss_pred ceeEEeccceeEEEccCCcceeEeccccCc------------------ceEEeeeeccCceEEEecCC------------
Confidence 478888888999999998877776543221 34788999888887764321
Q ss_pred CCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC----ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCc
Q 004067 262 KSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG----PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQT 337 (776)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 337 (776)
..|+.+++++. ....+- .........+++.+.++.|+++.. .
T Consensus 134 -----------------------~~I~~~~~~g~~~~~~~~~~~--------~~~~~~p~glavD~~~~~lY~~d~-~-- 179 (400)
T 3p5b_L 134 -----------------------RMICSTQLDRAHGVSSYDTVI--------SRDIQAPDGLAVDWIHSNIYWTDS-V-- 179 (400)
T ss_dssp -----------------------TEEEEEEC------CCCEEEE--------CSSCSCEEEEEEETTTTEEEEEET-T--
T ss_pred -----------------------CeEEEEEcccCCCCCcceEEE--------eCCCCCcccEEEEecCCceEEEEC-C--
Confidence 23666777652 222221 112234556788875555665532 2
Q ss_pred eEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCceeeccccCCeEEE
Q 004067 338 KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVE 416 (776)
Q Consensus 338 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~ 416 (776)
...|.++++++...+.+...... .| .+++-++ ++.+|.++......|++++++|...+.+........
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~~~~---------~P--~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P 248 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRENGS---------KP--RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 248 (400)
T ss_dssp TTEEEEECTTTCSEEEEEECSSC---------CE--EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCE
T ss_pred CCeEEEEeCCCCceEEEEeCCCC---------Cc--ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCce
Confidence 33689999998777766543211 01 1112222 334555554333589999999987666644332222
Q ss_pred EEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC----CCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 417 QIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG----KGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 417 ~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
.-+.++++++.||+..... ..|+++++ +|. ..+.+... .....+++ ++..|.++-... ..|
T Consensus 249 ~glavd~~~~~lY~aD~~~----~~I~~~d~--dG~----~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~---~~V 313 (400)
T 3p5b_L 249 NGITLDLLSGRLYWVDSKL----HSISSIDV--NGG----NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIIN---EAI 313 (400)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEEET--TSC----CCEEEEECSSTTSSEEEEEE--ETTEEEEEESSS---CSE
T ss_pred EEEEEEeCCCEEEEEECCC----CEEEEEeC--CCC----ccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCC---CeE
Confidence 2345898899999987653 37999998 564 23333221 12334454 555666665433 358
Q ss_pred EEEEcCCCceeEee
Q 004067 493 LLCSLQDGSLVLPL 506 (776)
Q Consensus 493 ~~~~~~~~~~~~~l 506 (776)
++++..+|+..+.+
T Consensus 314 ~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 314 FSANRLTGSDVNLL 327 (400)
T ss_dssp EEEESSSCCCCEEE
T ss_pred EEEEcCCCCceEEE
Confidence 88886677655544
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-07 Score=97.49 Aligned_cols=115 Identities=13% Similarity=-0.034 Sum_probs=69.6
Q ss_pred CceEEEEEcCCCCccc-----ccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh---hccCC--------
Q 004067 553 PYKTLISVYGGPCVQL-----VCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK---HNCGR-------- 616 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~-----~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~---~~~~~-------- 616 (776)
..|.||++||..+... ....|...+..++..|.++||.|+++|++|+|.+......... ...+.
T Consensus 51 ~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~~ 130 (431)
T 2hih_A 51 NKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSEK 130 (431)
T ss_dssp CSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHHH
T ss_pred CCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhcccccccccccc
Confidence 4467899999766421 1223422112367888999999999999999876432111000 00000
Q ss_pred ----ccHHHHHHHHHHHHHcCCCC-CCcEEEEeechHHHHHHHHHhh--------------------------CCCceEE
Q 004067 617 ----IDAEDQLTGAEWLIKQGLAK-VGHIGLYGWSYGGYLSAITLAR--------------------------FPDVFQC 665 (776)
Q Consensus 617 ----~~~~D~~~~i~~l~~~~~id-~~~i~l~G~S~GG~~a~~~a~~--------------------------~~~~~~~ 665 (776)
...+|+.+.+ +. .. ..++.|+||||||.++..++.. +|+++..
T Consensus 131 ~~~~~~a~dl~~ll----~~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~s 204 (431)
T 2hih_A 131 YGHERYGKTYEGVL----KD--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTS 204 (431)
T ss_dssp HTCCSEEEEECCSC----TT--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEE
T ss_pred CCHHHHHHHHHHHH----HH--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeE
Confidence 0001111111 11 12 3689999999999999998876 6888999
Q ss_pred EEEcCCCC
Q 004067 666 AVSGAPVT 673 (776)
Q Consensus 666 ~v~~~~~~ 673 (776)
++++++..
T Consensus 205 lv~i~tP~ 212 (431)
T 2hih_A 205 ITTIATPH 212 (431)
T ss_dssp EEEESCCT
T ss_pred EEEECCCC
Confidence 98887643
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.9e-05 Score=77.89 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=70.0
Q ss_pred c--CCCCEEEEEeCCCCcCcceEEEEecCCC--ceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeeEEEeecCC
Q 004067 63 S--PDDNLITYLLSPDHSLSRKVFSFDPKTC--KQELVFSPPDGGLDENNISPEEKLRRERLRERGL-GVTRYEWVKTSS 137 (776)
Q Consensus 63 S--pDG~~ia~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~sp~~~ 137 (776)
| +|+++|+--...+ ..|+++|.++. +++.+-. |.+++-.. ..+. .-.....+|
T Consensus 90 ~~~~~r~~l~v~~l~s----~~I~viD~~t~p~~p~~~k~----------ie~~~~~~-----~~g~s~Ph~~~~~p--- 147 (462)
T 2ece_A 90 KPNIERRFLIVPGLRS----SRIYIIDTKPNPREPKIIKV----------IEPEEVKK-----VSGYSRLHTVHCGP--- 147 (462)
T ss_dssp CTTCCSCEEEEEBTTT----CCEEEEECCSCTTSCEEEEE----------ECHHHHHH-----HHCEEEEEEEEECS---
T ss_pred CCCccCCEEEEccCCC----CeEEEEECCCCCCCceeeee----------echhhccc-----ccCCCcccceeECC---
Confidence 8 9999887554433 57999998754 2222221 11111110 0011 123456778
Q ss_pred CceEEEEe--C------CCcEEEEeCCCCccceecCCCCC--CCccCceeCCCCCEEEEEE-------------------
Q 004067 138 KKKIIMVP--L------PDGIYFQDLSCSKPELKLSSSSC--SPVIDPHLSSDGTMIAFVR------------------- 188 (776)
Q Consensus 138 dg~~l~~~--~------~~~l~~~d~~~~~~~~~l~~~~~--~~~~~~~~SpDg~~la~~~------------------- 188 (776)
|| |+++ . .+.|.++|.++.+.+..+..+.. .....+.|+||++ +++++
T Consensus 148 dG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~ 224 (462)
T 2ece_A 148 DA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKD 224 (462)
T ss_dssp SC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHH
T ss_pred Ce--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhh
Confidence 99 4444 2 25699999999987745543322 1133477899999 45555
Q ss_pred --CCcEEEEecCCCceeE
Q 004067 189 --DCELHVLNLLINEQRQ 204 (776)
Q Consensus 189 --~~~l~~~~l~~g~~~~ 204 (776)
.+.|.++++++++..+
T Consensus 225 ~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 225 RYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp HSCCEEEEEETTTTEEEE
T ss_pred ccCCEEEEEECCCCcEee
Confidence 3569999999886544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-05 Score=79.17 Aligned_cols=216 Identities=13% Similarity=0.036 Sum_probs=119.3
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCC-----CCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGL-----DENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
.|..+.|+|||+. .|+.... ..|++++.++++.+.+........ +........ .......+
T Consensus 20 ~p~~i~~d~~g~~-l~v~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~p~gi 85 (322)
T 2fp8_A 20 APNSFTFDSTNKG-FYTSVQD----GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRP---------LCGRTYDI 85 (322)
T ss_dssp CCCCEECCTTCSS-EEEECTT----SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHH---------HHCCEEEE
T ss_pred CceEEEEcCCCCE-EEEEcCC----CeEEEECCCCCceEEEecccccccccccccccchhccc---------cCCCCceE
Confidence 4588999999874 4555433 469999998877655442110000 000000000 01234566
Q ss_pred EEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCC----CCCccCceeCC-CCCEEEEEEC---------------
Q 004067 131 EWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSS----CSPVIDPHLSS-DGTMIAFVRD--------------- 189 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~----~~~~~~~~~Sp-Dg~~la~~~~--------------- 189 (776)
.+++ ++..|++. ....|+++|.++++.+ .+.... ......+.+.| ||+ |.+...
T Consensus 86 ~~~~---~~g~l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 86 SYNL---QNNQLYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp EEET---TTTEEEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHH
T ss_pred EEcC---CCCcEEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcc
Confidence 7775 55556666 4556999998887665 432211 11234578889 886 333321
Q ss_pred ----CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCC
Q 004067 190 ----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSV 265 (776)
Q Consensus 190 ----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 265 (776)
+.|++++.++++.+.+..... ...+++|+|||+.|++.....
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~~~~------------------~p~gia~~~dg~~lyv~d~~~---------------- 206 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLKELH------------------VPGGAEVSADSSFVLVAEFLS---------------- 206 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEES------------------CCCEEEECTTSSEEEEEEGGG----------------
T ss_pred cCCCceEEEEeCCCCEEEEeccCCc------------------cCcceEECCCCCEEEEEeCCC----------------
Confidence 348888888887655432211 134788999999777654221
Q ss_pred CCCCcceecCCCCCCCCCeEEEEEEEcCCC---ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeec-------
Q 004067 266 GSEAQEDHAYPFAGASNVKVRLGVVSAAGG---PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS------- 335 (776)
Q Consensus 266 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~------- 335 (776)
..|++++++++ ....+... . + ...+.+.+||++ +.+....
T Consensus 207 -------------------~~I~~~~~~~~~~~~~~~~~~~------~---g-P~gi~~d~~G~l-~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 207 -------------------HQIVKYWLEGPKKGTAEVLVKI------P---N-PGNIKRNADGHF-WVSSSEELDGNMHG 256 (322)
T ss_dssp -------------------TEEEEEESSSTTTTCEEEEEEC------S---S-EEEEEECTTSCE-EEEEEEETTSSTTS
T ss_pred -------------------CeEEEEECCCCcCCccceEEeC------C---C-CCCeEECCCCCE-EEEecCcccccccC
Confidence 24677777653 22222110 1 1 456889999973 3333221
Q ss_pred CceEEEEEEECCCCceEEE
Q 004067 336 QTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 336 ~~~~~l~~~d~~~g~~~~l 354 (776)
.....|+++|.++...+.+
T Consensus 257 ~~~~~v~~~d~~G~~~~~~ 275 (322)
T 2fp8_A 257 RVDPKGIKFDEFGNILEVI 275 (322)
T ss_dssp CEEEEEEEECTTSCEEEEE
T ss_pred CCccEEEEECCCCCEEEEE
Confidence 1246799999864333333
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-05 Score=87.07 Aligned_cols=99 Identities=9% Similarity=0.034 Sum_probs=69.3
Q ss_pred ceeEcC-----CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE-
Q 004067 59 SIGFSP-----DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW- 132 (776)
Q Consensus 59 ~~~~Sp-----DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 132 (776)
.|..|. ||++++-....+ ..|-++|+++.+...++..+. +.+...+.+
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~----~rVavIdl~t~~~~~ii~ip~----------------------g~~phg~~~~ 142 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKAN----TRVARVRCDVMKCDAILEIPN----------------------AKGIHGLRPQ 142 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTT----TEEEEEETTTTEEEEEEECSS----------------------CCSEEEEEEC
T ss_pred ccccCCCCCCcCCCEEEEEcCCC----CEEEEEECCCceEeeEEeCCC----------------------CCCCcceeee
Confidence 388888 999876543332 579999999999877665332 234566666
Q ss_pred e-ecCCCceEEEEeC-------------------CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE
Q 004067 133 V-KTSSKKKIIMVPL-------------------PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR 188 (776)
Q Consensus 133 s-p~~~dg~~l~~~~-------------------~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~ 188 (776)
+ | |+++++... ++.+-++|.++.+...++..+. .......||||+++..++
T Consensus 143 ~~p---~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~ 213 (595)
T 1fwx_A 143 KWP---RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTS 213 (595)
T ss_dssp CSS---BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEE
T ss_pred ecC---CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEe
Confidence 5 8 999987772 1247789999877664443322 256789999999887776
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-05 Score=79.66 Aligned_cols=233 Identities=10% Similarity=0.080 Sum_probs=134.1
Q ss_pred EEEEEECCcEEEEecCCCc--eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeec
Q 004067 183 MIAFVRDCELHVLNLLINE--QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQ 260 (776)
Q Consensus 183 ~la~~~~~~l~~~~l~~g~--~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 260 (776)
.|+|...++|..++++++. ...+..+... ..++.|.+.++.|++.....
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~------------------~~~ld~d~~~~~lyw~D~~~----------- 56 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLED------------------AAAVDFVFSHGLIYWSDVSE----------- 56 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEE------------------EEEEEEEGGGTEEEEEETTT-----------
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCc------------------cEEEEEEeCCCEEEEEECCC-----------
Confidence 5778777889999998774 3333221110 23678999888887754221
Q ss_pred CCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce--EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCce
Q 004067 261 GKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV--SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTK 338 (776)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 338 (776)
..|+.++++++.. ..+.. .......+++.+.+..|+++.. ..
T Consensus 57 ------------------------~~I~r~~~~g~~~~~~~~~~---------~l~~p~glavd~~~g~ly~~d~---~~ 100 (318)
T 3sov_A 57 ------------------------EAIKRTEFNKTESVQNVVVS---------GLLSPDGLACDWLGEKLYWTDS---ET 100 (318)
T ss_dssp ------------------------TEEEEEETTSSSCCCEEEEE---------CCSCCCEEEEETTTTEEEEEET---TT
T ss_pred ------------------------CcEEEEEccCCCceEEEEcC---------CCCCccEEEEEcCCCeEEEEEC---CC
Confidence 3467788877642 22211 1122345778876655665532 23
Q ss_pred EEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEE
Q 004067 339 LKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQ 417 (776)
Q Consensus 339 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~ 417 (776)
..|.++++++...+.+...... .| .++..++ ++.+|.++......|++++++|...+.+.........
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~---------~P--~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pn 169 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELD---------QP--RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN 169 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCS---------SE--EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred CEEEEEECCCCcEEEEEeCCCC---------Cc--cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCcc
Confidence 4689999987766665432111 01 1112222 2344555543345899999998776655433322223
Q ss_pred EEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC-C-CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEE
Q 004067 418 IVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-G-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLC 495 (776)
Q Consensus 418 ~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~ 495 (776)
-+.++++++.||+..... ..|+++++ +|. ..+.+.. . .....+++. +..+.++-.. ...|+++
T Consensus 170 glavd~~~~~lY~aD~~~----~~I~~~d~--dG~----~~~~~~~~~~~~P~glav~--~~~lywtd~~---~~~V~~~ 234 (318)
T 3sov_A 170 GLTLDYEEQKLYWADAKL----NFIHKSNL--DGT----NRQAVVKGSLPHPFALTLF--EDILYWTDWS---THSILAC 234 (318)
T ss_dssp EEEEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEECSCCSCEEEEEEE--TTEEEEEETT---TTEEEEE
T ss_pred EEEEeccCCEEEEEECCC----CEEEEEcC--CCC----ceEEEecCCCCCceEEEEe--CCEEEEEecC---CCeEEEE
Confidence 345999999999997654 37999998 564 2333332 1 224455664 4456665332 2478888
Q ss_pred EcCCCceeEee
Q 004067 496 SLQDGSLVLPL 506 (776)
Q Consensus 496 ~~~~~~~~~~l 506 (776)
+..+|+..+.+
T Consensus 235 ~~~~G~~~~~i 245 (318)
T 3sov_A 235 NKYTGEGLREI 245 (318)
T ss_dssp ETTTCCSCEEE
T ss_pred ECCCCCceEEE
Confidence 87777654444
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-05 Score=78.26 Aligned_cols=199 Identities=11% Similarity=0.026 Sum_probs=123.0
Q ss_pred CeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccce-ecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCC
Q 004067 126 GVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPEL-KLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLIN 200 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g 200 (776)
....+.|++ .++.|+++ ..+.|++++++++.... .+...-. ....+++.+.+..|.++.. +.|+++++++.
T Consensus 36 ~~~~ld~d~---~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~-~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 36 DAAAVDFVF---SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL-SPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEG---GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS-CCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccEEEEEEe---CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC-CccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 345788998 88889887 55679999999875321 2222211 2456788887777777653 46888888876
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
..+.+..... ....+++..|++..|++.....
T Consensus 112 ~~~~l~~~~~-----------------~~P~giavdp~~g~ly~td~~~------------------------------- 143 (318)
T 3sov_A 112 LRKVLFWQEL-----------------DQPRAIALDPSSGFMYWTDWGE------------------------------- 143 (318)
T ss_dssp SCEEEECSSC-----------------SSEEEEEEEGGGTEEEEEECSS-------------------------------
T ss_pred cEEEEEeCCC-----------------CCccEEEEeCCCCEEEEEecCC-------------------------------
Confidence 6555543221 1134778889888777653210
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
...|+++++++...+.+-. .....-..++|+|+++.|+++.. ....|+++|++++..+.+.....
T Consensus 144 ---~~~I~r~~~dG~~~~~~~~--------~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~- 208 (318)
T 3sov_A 144 ---VPKIERAGMDGSSRFIIIN--------SEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL- 208 (318)
T ss_dssp ---SCEEEEEETTSCSCEEEEC--------SSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC-
T ss_pred ---CCEEEEEEcCCCCeEEEEE--------CCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC-
Confidence 1357888888766555421 12234567999998877777643 34469999998777666653111
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT 403 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~ 403 (776)
..+.+++.+.+.+||+....+ .|++++..++
T Consensus 209 ----------~~P~glav~~~~lywtd~~~~--~V~~~~~~~G 239 (318)
T 3sov_A 209 ----------PHPFALTLFEDILYWTDWSTH--SILACNKYTG 239 (318)
T ss_dssp ----------SCEEEEEEETTEEEEEETTTT--EEEEEETTTC
T ss_pred ----------CCceEEEEeCCEEEEEecCCC--eEEEEECCCC
Confidence 111223344556666643344 8888887544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-05 Score=80.26 Aligned_cols=128 Identities=13% Similarity=-0.038 Sum_probs=73.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.|..+++||||+.++-.....+. ...|+.++ +++......... ..+. ....+....+++
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~-~~~l~~~~--~g~~~~~p~~~~--~~~~---------------~~~~p~gv~~d~- 76 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQP-EMQVAELT--QDGLIPFPPQSG--NAII---------------TFDTVLGIKSDG- 76 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCC-SCSEEEEE--TTEEEESCCCCS--SCCC---------------CCSCEEEEEECS-
T ss_pred CcceEEECCCCCEEEEeCCCCCC-ceEEEEEC--CCCeecCCCccc--Cccc---------------ceeEeeEEEEcC-
Confidence 35889999999864432221111 14788888 455432221000 0000 113567889999
Q ss_pred CCCceEEEEeC------CCcEEEEeCCCCccceecCCCC-----CCCccCceeCCCCCEEEEEE-----CCcEEEEecCC
Q 004067 136 SSKKKIIMVPL------PDGIYFQDLSCSKPELKLSSSS-----CSPVIDPHLSSDGTMIAFVR-----DCELHVLNLLI 199 (776)
Q Consensus 136 ~~dg~~l~~~~------~~~l~~~d~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~la~~~-----~~~l~~~~l~~ 199 (776)
||+..+... ...|+++|+.+++....+.... ......++++|++..+.+.. .+.|+++++++
T Consensus 77 --~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 77 --NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp --SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred --CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 987444432 4689999999887442332211 11245678898766554442 24699999998
Q ss_pred CceeEEe
Q 004067 200 NEQRQLT 206 (776)
Q Consensus 200 g~~~~lt 206 (776)
|+..++.
T Consensus 155 g~~~r~~ 161 (343)
T 2qe8_A 155 GLAARVL 161 (343)
T ss_dssp CCEEEEC
T ss_pred CCEEEEe
Confidence 8776654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00043 Score=69.55 Aligned_cols=270 Identities=15% Similarity=0.073 Sum_probs=147.9
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCC-CCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCce
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSS-SSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQ 202 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~ 202 (776)
....+.+++ ||+..+.. .++.|+++|.. ++.. .+.. ........+.++++|+..+... .+.|++++.+ |+.
T Consensus 21 ~p~~i~~d~---~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 21 GPYGITSSE---DGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp CEEEEEECT---TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CcceeeECC---CCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 456777888 88855444 45789999988 5554 3221 1112356678889997433322 2469999988 666
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+.+...... .....+++.|+|+ |++.....
T Consensus 95 ~~~~~~~~~----------------~~~~~i~~~~~g~-l~v~~~~~--------------------------------- 124 (300)
T 2qc5_A 95 TEYPLPQPD----------------SGPYGITEGLNGD-IWFTQLNG--------------------------------- 124 (300)
T ss_dssp EEEECSSTT----------------CCEEEEEECSTTC-EEEEETTT---------------------------------
T ss_pred EEecCCCCC----------------CCCccceECCCCC-EEEEccCC---------------------------------
Confidence 544332110 0134677888886 44433111
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCce
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
..|+.+|.+ ++...+.. .........+.+++||+ +++... ....|+++|. +++...+.......
T Consensus 125 --~~i~~~~~~-g~~~~~~~-------~~~~~~~~~i~~d~~g~-l~v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~- 188 (300)
T 2qc5_A 125 --DRIGKLTAD-GTIYEYDL-------PNKGSYPAFITLGSDNA-LWFTEN---QNNSIGRITN-TGKLEEYPLPTNAA- 188 (300)
T ss_dssp --TEEEEECTT-SCEEEEEC-------SSTTCCEEEEEECTTSS-EEEEET---TTTEEEEECT-TCCEEEEECSSTTC-
T ss_pred --CeEEEECCC-CCEEEccC-------CCCCCCceeEEECCCCC-EEEEec---CCCeEEEECC-CCcEEEeeCCCCCC-
Confidence 246778887 66555433 22334567889999998 444332 2335899998 56655432111100
Q ss_pred eecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEEEEEccCCCcee
Q 004067 363 VNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
.+..+..++ +.+++.....+ .|++++.++..... +.........+ .++++|+ ||+..... .
T Consensus 189 ---------~~~~i~~d~~g~l~v~~~~~~--~i~~~~~~g~~~~~~~~~~~~~~~~i-~~d~~g~-l~v~~~~~----~ 251 (300)
T 2qc5_A 189 ---------APVGITSGNDGALWFVEIMGN--KIGRITTTGEISEYDIPTPNARPHAI-TAGKNSE-IWFTEWGA----N 251 (300)
T ss_dssp ---------CEEEEEECTTSSEEEEETTTT--EEEEECTTCCEEEEECSSTTCCEEEE-EECSTTC-EEEEETTT----T
T ss_pred ---------CcceEEECCCCCEEEEccCCC--EEEEEcCCCcEEEEECCCCCCCceEE-EECCCCC-EEEeccCC----C
Confidence 011122333 34554444444 79999985443222 22222334444 3888887 66665433 3
Q ss_pred eEEEEEeCCCCCCccccceeecC---CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 441 HLYCAKLYPDWNHTLEAPVKLTN---GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 441 ~l~~~~~~~~g~~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
.|++++. .|. ...+.. ......+.++++|+.++ ... . .|++++.
T Consensus 252 ~i~~~~~--~g~-----~~~~~~~~~~~~~~~i~~~~~g~l~v--~~~-~---~i~~~~p 298 (300)
T 2qc5_A 252 QIGRITN--DNT-----IQEYQLQTENAEPHGITFGKDGSVWF--ALK-C---KIGKLNL 298 (300)
T ss_dssp EEEEECT--TSC-----EEEEECCSTTCCCCCEEECTTSCEEE--ECS-S---EEEEEEE
T ss_pred eEEEECC--CCc-----EEEEECCccCCccceeEeCCCCCEEE--Ecc-C---ceEEeCC
Confidence 5777776 342 223221 12355678899987333 222 1 5777764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-05 Score=73.62 Aligned_cols=205 Identities=12% Similarity=0.042 Sum_probs=121.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|+||| +| |.+... .....|..+|+++++..+-...+ .......+++
T Consensus 23 ~~Gl~~~~dg-~L-yvstg~-~~~s~v~~iD~~tg~v~~~i~l~------------------------~~~fgeGi~~-- 73 (266)
T 2iwa_A 23 TQGLVYAEND-TL-FESTGL-YGRSSVRQVALQTGKVENIHKMD------------------------DSYFGEGLTL-- 73 (266)
T ss_dssp EEEEEECSTT-EE-EEEECS-TTTCEEEEEETTTCCEEEEEECC------------------------TTCCEEEEEE--
T ss_pred cccEEEeCCC-eE-EEECCC-CCCCEEEEEECCCCCEEEEEecC------------------------CCcceEEEEE--
Confidence 3688999996 44 444321 11368999999999875544311 1223334666
Q ss_pred CCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCcee-EEeeCCCC
Q 004067 137 SKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQR-QLTHGANG 211 (776)
Q Consensus 137 ~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~-~lt~~~~~ 211 (776)
+|++|+.. .++.++++|.++.+....+..+ . .....+++||++++ +++ +.|+++|+++.+.. .+.....+
T Consensus 74 -~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~--~~g~glt~Dg~~l~-vs~gs~~l~viD~~t~~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 74 -LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M--KDGWGLATDGKILY-GSDGTSILYEIDPHTFKLIKKHNVKYNG 148 (266)
T ss_dssp -ETTEEEEEETTCSEEEEEETTTTEEEEEEECC-S--SSCCEEEECSSSEE-EECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred -eCCEEEEEEecCCEEEEEECCCCcEEEEEECC-C--CCeEEEEECCCEEE-EECCCCeEEEEECCCCcEEEEEEECCCC
Confidence 77888877 5778999999998776455443 1 22356889998865 554 46999999987653 33322111
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
. . +...+.+.|. || +|+ ...-. ...|.++|
T Consensus 149 ~-p------------~~~~nele~~-dg-~ly-vn~~~----------------------------------~~~V~vID 178 (266)
T 2iwa_A 149 H-R------------VIRLNELEYI-NG-EVW-ANIWQ----------------------------------TDCIARIS 178 (266)
T ss_dssp E-E------------CCCEEEEEEE-TT-EEE-EEETT----------------------------------SSEEEEEE
T ss_pred c-c------------cccceeEEEE-CC-EEE-EecCC----------------------------------CCeEEEEE
Confidence 0 0 0012345677 66 454 44211 13589999
Q ss_pred cCCCce-EEEEcccCC----CCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 292 AAGGPV-SWMDLQCGG----TDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 292 ~~~~~~-~~l~~~~~~----~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
+++++. ..+.++... ............++|+||++.++.+... ...|+.+++..
T Consensus 179 ~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~---~~~v~~i~l~~ 237 (266)
T 2iwa_A 179 AKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL---WPKLFEIKLHL 237 (266)
T ss_dssp TTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT---CSEEEEEEEEE
T ss_pred CCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC---CCeEEEEEEec
Confidence 999885 445542100 0001112345789999999877666432 23466666543
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-06 Score=89.29 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCCcccc----cccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLV----CDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW 628 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~----~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~ 628 (776)
..+.||++||..+.... ...|......+++.|+++||.|+++|++|+|.+... ..++...++.
T Consensus 5 ~~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G~s~~~-------------a~~l~~~i~~ 71 (387)
T 2dsn_A 5 NDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDR-------------ACEAYAQLVG 71 (387)
T ss_dssp CCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSBCHHHH-------------HHHHHHHHHC
T ss_pred CCCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCCCcccc-------------HHHHHHHHHh
Confidence 33568899997654311 122422110245889999999999999998765321 0111111110
Q ss_pred --------HHHc---------------CCCCCCcEEEEeechHHHHHHHHHhh-------------------CC------
Q 004067 629 --------LIKQ---------------GLAKVGHIGLYGWSYGGYLSAITLAR-------------------FP------ 660 (776)
Q Consensus 629 --------l~~~---------------~~id~~~i~l~G~S~GG~~a~~~a~~-------------------~~------ 660 (776)
+.+. ......++.|+||||||.++..++.+ +|
T Consensus 72 ~~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~ 151 (387)
T 2dsn_A 72 GTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGH 151 (387)
T ss_dssp EEEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCC
T ss_pred hhhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccc
Confidence 1000 00134689999999999999999972 35
Q ss_pred CceEEEEEcCCC
Q 004067 661 DVFQCAVSGAPV 672 (776)
Q Consensus 661 ~~~~~~v~~~~~ 672 (776)
+++..+|.+++.
T Consensus 152 ~~V~sLV~i~tP 163 (387)
T 2dsn_A 152 HFVLSVTTIATP 163 (387)
T ss_dssp CCEEEEEEESCC
T ss_pred cceeEEEEECCC
Confidence 678888887654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00025 Score=80.94 Aligned_cols=226 Identities=9% Similarity=0.008 Sum_probs=138.0
Q ss_pred eEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCC-
Q 004067 82 KVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCS- 158 (776)
Q Consensus 82 ~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~- 158 (776)
.|+.+++++++..++... ......+.|++ .+..|+++ ..+.|+++++++.
T Consensus 405 ~Ir~i~l~~~~~~~l~~~------------------------~~~~~gl~~d~---~~~~lY~sD~~~~~I~~~~l~g~~ 457 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPN------------------------LRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAH 457 (791)
T ss_dssp SEEEECTTSCCCEEEECS------------------------CSSEEEEEEET---TTTEEEEEETTTTEEEEEEC----
T ss_pred ceeEeeccCCcceeeecC------------------------CCceEEEeecc---cCCeeEEeeccceeEEEEeccCCC
Confidence 588999988777666531 13566788888 88888887 4467999999874
Q ss_pred ---ccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceE
Q 004067 159 ---KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGY 233 (776)
Q Consensus 159 ---~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (776)
..+..+.... .....+++.+.++.|.++.. +.|+++++++...+.|...... ...++
T Consensus 458 ~~~~~~~vi~~~l-~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~-----------------~P~gI 519 (791)
T 3m0c_C 458 GVSSYDTVISRDI-QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----------------KPRAI 519 (791)
T ss_dssp ----CEEEECSSC-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-----------------CEEEE
T ss_pred CCcceeEEEecCC-CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC-----------------CcceE
Confidence 2331232222 23556888888888777654 4699999987776666543211 13478
Q ss_pred EECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCc
Q 004067 234 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDE 313 (776)
Q Consensus 234 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 313 (776)
+..|.+..|++..... ...|++.++++...+.+-. ...
T Consensus 520 aVDp~~g~LYwtD~g~----------------------------------~~~I~~~~~dG~~~~~lv~--------~~l 557 (791)
T 3m0c_C 520 VVDPVHGFMYWTDWGT----------------------------------PAKIKKGGLNGVDIYSLVT--------ENI 557 (791)
T ss_dssp EEETTTTEEEEEECSS----------------------------------SCEEEEEETTSCCEEEEEC--------SSC
T ss_pred EEecCCCCEEEecCCC----------------------------------CCeEEEEecCCCceEEEEe--------CCC
Confidence 8999888787654211 0347888888777665522 222
Q ss_pred ceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCce
Q 004067 314 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR 393 (776)
Q Consensus 314 ~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 393 (776)
..-..++++++++.||++. . ....|+++++++...+.+..... .+ +.+.+++...+.+||+....+
T Consensus 558 ~~P~GLavD~~~~~LYwaD-~--~~~~I~~~d~dG~~~~~v~~~~~-~l--------~~P~glav~~~~lYwtD~~~~-- 623 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVD-S--KLHSISSIDVNGGNRKTILEDEK-RL--------AHPFSLAVFEDKVFWTDIINE-- 623 (791)
T ss_dssp SCEEEEEEETTTTEEEEEE-T--TTTEEEEEETTSCSCEEEEECTT-TT--------SSEEEEEEETTEEEEEETTTT--
T ss_pred CCceEEEEecCCCeEEEEe-C--CCCcEEEEecCCCceEEEecCCC-cc--------CCCCEEEEeCCEEEEEECCCC--
Confidence 3556789998877777664 2 23469999998887777764321 11 111122334555665544444
Q ss_pred EEEEEeCCCc-eeecc
Q 004067 394 HLYLHDINGT-CLGPI 408 (776)
Q Consensus 394 ~l~~~~~~g~-~~~~l 408 (776)
.|++++..++ ..+.|
T Consensus 624 ~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 624 AIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred EEEEEeCCCCcceEEe
Confidence 7888874433 33334
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00021 Score=81.69 Aligned_cols=233 Identities=12% Similarity=0.036 Sum_probs=134.9
Q ss_pred EEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCC
Q 004067 183 MIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGK 262 (776)
Q Consensus 183 ~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 262 (776)
.|+|.....|+.+++++++..++...... ..++.|.+.++.|++.....
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~------------------~~gl~~d~~~~~lY~sD~~~------------- 445 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRN------------------VVALDTEVASNRIYWSDLSQ------------- 445 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEEECSCSS------------------EEEEEEETTTTEEEEEETTT-------------
T ss_pred ccccccccceeEeeccCCcceeeecCCCc------------------eEEEeecccCCeeEEeeccc-------------
Confidence 56677677899999988877776543321 34678988888787654321
Q ss_pred CCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC----ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCce
Q 004067 263 SSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG----PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTK 338 (776)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 338 (776)
..|+.+++++. ....+- .........+++.+.++.||++. . ..
T Consensus 446 ----------------------~~I~~~~l~g~~~~~~~~~vi--------~~~l~~P~GLAvD~~~~~LY~tD-~--~~ 492 (791)
T 3m0c_C 446 ----------------------RMICSTQLDRAHGVSSYDTVI--------SRDIQAPDGLAVDWIHSNIYWTD-S--VL 492 (791)
T ss_dssp ----------------------TEEEEEEC--------CEEEE--------CSSCSCCCEEEEETTTTEEEEEE-T--TT
T ss_pred ----------------------eeEEEEeccCCCCCcceeEEE--------ecCCCCcceeeeeecCCcEEEEe-c--CC
Confidence 23566666653 222221 11222334578888887676654 2 23
Q ss_pred EEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCceeeccccCCe-EEE
Q 004067 339 LKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVE 416 (776)
Q Consensus 339 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~-~~~ 416 (776)
..|+++++++...+.+...... .| .+++.++ ++.+|+++......|++++++|...+.|..... ...
T Consensus 493 ~~I~v~~ldG~~~~~l~~~~l~---------~P--~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~ 561 (791)
T 3m0c_C 493 GTVSVADTKGVKRKTLFRENGS---------KP--RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 561 (791)
T ss_dssp TEEEEEETTSSSEEEEEECTTC---------CE--EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred CeEEEEeCCCCeEEEEEeCCCC---------Cc--ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCce
Confidence 4699999998777766543211 01 1112222 234455554333589999999987766655432 233
Q ss_pred EEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC-C---CeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 417 QIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-K---GKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 417 ~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~---~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
++ .+++.++.||+..... ..|+++++ +|. ..+.+... . ....+++ ++.+|.++-... ..|
T Consensus 562 GL-avD~~~~~LYwaD~~~----~~I~~~d~--dG~----~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~---~~I 625 (791)
T 3m0c_C 562 GI-TLDLLSGRLYWVDSKL----HSISSIDV--NGG----NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIIN---EAI 625 (791)
T ss_dssp EE-EEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEEECTTTTSSEEEEEE--ETTEEEEEETTT---TEE
T ss_pred EE-EEecCCCeEEEEeCCC----CcEEEEec--CCC----ceEEEecCCCccCCCCEEEE--eCCEEEEEECCC---CEE
Confidence 33 4888888899986543 37999998 665 23333221 1 2234444 555666554332 468
Q ss_pred EEEEcCCCceeEee
Q 004067 493 LLCSLQDGSLVLPL 506 (776)
Q Consensus 493 ~~~~~~~~~~~~~l 506 (776)
++++..+|+.++.+
T Consensus 626 ~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 626 FSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTCCCCEEE
T ss_pred EEEeCCCCcceEEe
Confidence 88887677655544
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=91.53 Aligned_cols=227 Identities=10% Similarity=0.016 Sum_probs=130.8
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCC-
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSC- 157 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~- 157 (776)
..|+++++++.+...+... ......+.|++ ++..|+++ ....|+++++++
T Consensus 386 ~~I~~id~~~~~~~~~~~~------------------------~~~p~gla~d~---~~~~Ly~sD~~~~~I~~~~~~g~ 438 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN------------------------LRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRA 438 (699)
T ss_dssp TC-CEECTTSCCEECCSCC------------------------CTTCCCCEEET---TTTEEEECCTTTTSBEEEESCCC
T ss_pred cceEEEeCCCCcceeeecc------------------------CcceEEEcccc---ccCeEEEEecCCCeEEEEecCCC
Confidence 3688889888776544421 12455678998 88889887 456899999987
Q ss_pred ---CccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcce
Q 004067 158 ---SKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTG 232 (776)
Q Consensus 158 ---~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (776)
.... .+..........+++.+.+..|+++. .+.|++++++++..+.+..... ....+
T Consensus 439 ~~~~~~~-~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~-----------------~~P~g 500 (699)
T 1n7d_A 439 HGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG-----------------SKPRA 500 (699)
T ss_dssp CC-CCCC-CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS-----------------CCCCC
T ss_pred CCCcceE-EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC-----------------CCcce
Confidence 3333 22211111245567777676665543 2468999988776655543221 11347
Q ss_pred EEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCC
Q 004067 233 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYD 312 (776)
Q Consensus 233 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 312 (776)
+++.|+++.|++..... ...|+++++++...+.+.. ..
T Consensus 501 iavDp~~g~ly~td~~~----------------------------------~~~I~~~~~dG~~~~~l~~--------~~ 538 (699)
T 1n7d_A 501 IVVDPVHGFMYWTDWGT----------------------------------PAKIKKGGLNGVDIYSLVT--------EN 538 (699)
T ss_dssp EECCSSSSCCEECCCSS----------------------------------SCCEEBCCSSSCCCCEESC--------SS
T ss_pred EEEccCCCcEEEcccCC----------------------------------CCeEEEEeCCCCCeeEEEe--------CC
Confidence 78999888776643110 0235666666544433311 11
Q ss_pred cceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCc
Q 004067 313 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF 392 (776)
Q Consensus 313 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~ 392 (776)
...-..++|+|+++.|+++.. ....|+++++++...+.+.... ..+ +.+.+++.+++.+||+....+
T Consensus 539 l~~PnGlavd~~~~~LY~aD~---~~~~I~~~d~dG~~~~~~~~~~-~~~--------~~P~glavd~~~lywtd~~~~- 605 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE-KRL--------AHPFSLAVFEDKVFWTDIINE- 605 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEET---TTTEEEEECSSSSCCEEECCCS-SSC--------SSCCCCEEETTEEEEECSTTT-
T ss_pred CCCccEEEEeccCCEEEEEec---CCCeEEEEccCCCceEEEEecC-CcC--------CCceEeEEECCEEEEEeCCCC-
Confidence 122335899999887776642 2346999999876666554321 111 223344555666666553333
Q ss_pred eEEEEEeCCCce-eecc
Q 004067 393 RHLYLHDINGTC-LGPI 408 (776)
Q Consensus 393 ~~l~~~~~~g~~-~~~l 408 (776)
.|++++..+++ .+.|
T Consensus 606 -~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 606 -AIFSANRLTGSDVNLL 621 (699)
T ss_dssp -CEEEEETTTEEEEECC
T ss_pred -eEEEEEccCCCceEEe
Confidence 88889875444 3444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00035 Score=67.17 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=117.2
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..+.|+ || .|+......+ ...|.++|+++|+..+-...+ .....-..++
T Consensus 46 qGL~~~-~~-~LyestG~~g--~S~v~~vD~~Tgkv~~~~~l~------------------------~~~FgeGit~--- 94 (262)
T 3nol_A 46 EGFFYR-NG-YFYESTGLNG--RSSIRKVDIESGKTLQQIELG------------------------KRYFGEGISD--- 94 (262)
T ss_dssp EEEEEE-TT-EEEEEEEETT--EEEEEEECTTTCCEEEEEECC------------------------TTCCEEEEEE---
T ss_pred ceEEEE-CC-EEEEECCCCC--CceEEEEECCCCcEEEEEecC------------------------CccceeEEEE---
Confidence 567888 65 5543332222 358999999999875444321 1233334567
Q ss_pred CceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCcee-EEeeCCCCCc
Q 004067 138 KKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQR-QLTHGANGNT 213 (776)
Q Consensus 138 dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~-~lt~~~~~~~ 213 (776)
+|++|+.. .++.++++|.++.+....+.... ....+++||+.|+... .+.|+++|+++.+.. .+.....+ .
T Consensus 95 ~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g-~ 169 (262)
T 3nol_A 95 WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG-E 169 (262)
T ss_dssp ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT-E
T ss_pred eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC-c
Confidence 88888877 47889999999988774554322 3357778998765443 246999999987654 33221110 0
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
. +...+.+.|. ||+ |+ +..-. ...|.++|++
T Consensus 170 ~------------~~~lNELe~~-~G~-ly-an~w~----------------------------------~~~I~vIDp~ 200 (262)
T 3nol_A 170 E------------LPELNELEWV-DGE-IF-ANVWQ----------------------------------TNKIVRIDPE 200 (262)
T ss_dssp E------------CCCEEEEEEE-TTE-EE-EEETT----------------------------------SSEEEEECTT
T ss_pred c------------ccccceeEEE-CCE-EE-EEEcc----------------------------------CCeEEEEECC
Confidence 0 0001235565 664 54 33211 1358999999
Q ss_pred CCce-EEEEcccCCCC---CCCCcceEEEEEeccCCeEEEEEEeecCceEEEEE
Q 004067 294 GGPV-SWMDLQCGGTD---QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 294 ~~~~-~~l~~~~~~~~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 343 (776)
+|++ ..++++...+. ..........++|+|+++.++.+...-..-.+|.+
T Consensus 201 tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 201 TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence 9986 45655321110 11223355789999999987777544333344433
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00089 Score=67.76 Aligned_cols=235 Identities=11% Similarity=0.108 Sum_probs=118.1
Q ss_pred ccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 172 VIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
...++|+|||+ |.++. .+.|++++.+++..+.+.. +.. ..+++++|||+ |++.....
T Consensus 34 pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~~~~~~~-~~~------------------p~gia~~~dG~-l~vad~~~ 92 (306)
T 2p4o_A 34 LENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIHATV-EGK------------------VSGLAFTSNGD-LVATGWNA 92 (306)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEEEC-SSE------------------EEEEEECTTSC-EEEEEECT
T ss_pred cceEEECCCCC-EEEEeCCCCeEEEECCCCceEEEEeC-CCC------------------ceeEEEcCCCc-EEEEeccC
Confidence 55689999987 44443 2579999988754433322 210 33678999998 54433211
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEE
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTA 329 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~ 329 (776)
. ...|+.++..+++...+... ........+...+++. ++
T Consensus 93 ~---------------------------------~~~v~~~d~~~g~~~~~~~~-------~~~~~~~g~~~~~~~~-~~ 131 (306)
T 2p4o_A 93 D---------------------------------SIPVVSLVKSDGTVETLLTL-------PDAIFLNGITPLSDTQ-YL 131 (306)
T ss_dssp T---------------------------------SCEEEEEECTTSCEEEEEEC-------TTCSCEEEEEESSSSE-EE
T ss_pred C---------------------------------cceEEEEcCCCCeEEEEEeC-------CCccccCcccccCCCc-EE
Confidence 0 13467778888877655321 1112223444456664 33
Q ss_pred EEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC-cee---
Q 004067 330 QVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCL--- 405 (776)
Q Consensus 330 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~~--- 405 (776)
+. +. ....||++|..++..+.........-......+ ..+.+++.+++.+|++....+ .|+++++++ ++.
T Consensus 132 v~-d~--~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~-~~pngis~dg~~lyv~d~~~~--~I~~~~~~~~g~~~~~ 205 (306)
T 2p4o_A 132 TA-DS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF-PAANGLKRFGNFLYVSNTEKM--LLLRIPVDSTDKPGEP 205 (306)
T ss_dssp EE-ET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS-CSEEEEEEETTEEEEEETTTT--EEEEEEBCTTSCBCCC
T ss_pred EE-EC--CCCeEEEEeCCCCcEeEEEECCccccccccCCC-CcCCCcCcCCCEEEEEeCCCC--EEEEEEeCCCCCCCcc
Confidence 33 22 234799999987654332221110000000001 011122333333444443344 899999875 322
Q ss_pred eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC-CCeEEEEEc---CCcCEEEE
Q 004067 406 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLD---HNMRNFVD 481 (776)
Q Consensus 406 ~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~~s---pdg~~l~~ 481 (776)
+.+... .....+ .++++|+ ||+..... ..|++++. +|.. ..+..+... .....+.|+ ||+++|..
T Consensus 206 ~~~~~~-~~P~gi-~vd~dG~-l~va~~~~----~~V~~~~~--~G~~--~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 206 EIFVEQ-TNIDDF-AFDVEGN-LYGATHIY----NSVVRIAP--DRST--TIIAQAEQGVIGSTAVAFGQTEGDCTAIYV 274 (306)
T ss_dssp EEEEES-CCCSSE-EEBTTCC-EEEECBTT----CCEEEECT--TCCE--EEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred EEEecc-CCCCCe-EECCCCC-EEEEeCCC----CeEEEECC--CCCE--EEEeecccccCCceEEEEecccCCCCEEEE
Confidence 111110 001122 3788886 55554433 25777776 4531 011122222 346678998 89888877
Q ss_pred EeeC
Q 004067 482 FHDS 485 (776)
Q Consensus 482 ~~~~ 485 (776)
+...
T Consensus 275 t~~~ 278 (306)
T 2p4o_A 275 VTNG 278 (306)
T ss_dssp EECT
T ss_pred ECCC
Confidence 7654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0016 Score=65.79 Aligned_cols=180 Identities=10% Similarity=0.050 Sum_probs=97.2
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeec
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 365 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 365 (776)
.|+.+|.+++....+.. ......+++++||+ ++++. .......|+.+|..+|+.+.+.......+...
T Consensus 54 ~I~~~d~~g~~~~~~~~----------~~~p~gia~~~dG~-l~vad-~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g 121 (306)
T 2p4o_A 54 EIVSITPDGNQQIHATV----------EGKVSGLAFTSNGD-LVATG-WNADSIPVVSLVKSDGTVETLLTLPDAIFLNG 121 (306)
T ss_dssp EEEEECTTCCEEEEEEC----------SSEEEEEEECTTSC-EEEEE-ECTTSCEEEEEECTTSCEEEEEECTTCSCEEE
T ss_pred eEEEECCCCceEEEEeC----------CCCceeEEEcCCCc-EEEEe-ccCCcceEEEEcCCCCeEEEEEeCCCccccCc
Confidence 47888887765444422 23566789999998 33332 22223468899998998877655322211110
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec------c---c-cCCe-EEEEEEeecCCCcEEEEEEcc
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP------I---T-EGDW-MVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~------l---t-~~~~-~~~~~~~~s~dg~~i~~~~~~ 434 (776)
.. .+.++.+|+.....| .||+++.++++.+. + . .... .... .++||+.||+....
T Consensus 122 -~~--------~~~~~~~~v~d~~~g--~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png---is~dg~~lyv~d~~ 187 (306)
T 2p4o_A 122 -IT--------PLSDTQYLTADSYRG--AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG---LKRFGNFLYVSNTE 187 (306)
T ss_dssp -EE--------ESSSSEEEEEETTTT--EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE---EEEETTEEEEEETT
T ss_pred -cc--------ccCCCcEEEEECCCC--eEEEEeCCCCcEeEEEECCccccccccCCCCcCCC---cCcCCCEEEEEeCC
Confidence 00 122333444333355 89999987653211 1 0 0111 1122 38899999998765
Q ss_pred CCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 435 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 435 ~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
. ..|++++++..|. ......+........+.+++||+. |+..... ..|.+++. +|+.
T Consensus 188 ~----~~I~~~~~~~~g~--~~~~~~~~~~~~P~gi~vd~dG~l--~va~~~~--~~V~~~~~-~G~~ 244 (306)
T 2p4o_A 188 K----MLLLRIPVDSTDK--PGEPEIFVEQTNIDDFAFDVEGNL--YGATHIY--NSVVRIAP-DRST 244 (306)
T ss_dssp T----TEEEEEEBCTTSC--BCCCEEEEESCCCSSEEEBTTCCE--EEECBTT--CCEEEECT-TCCE
T ss_pred C----CEEEEEEeCCCCC--CCccEEEeccCCCCCeEECCCCCE--EEEeCCC--CeEEEECC-CCCE
Confidence 4 3688888732232 112222221122345789999963 4433322 35888886 4653
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.9e-05 Score=73.59 Aligned_cols=147 Identities=17% Similarity=0.092 Sum_probs=87.8
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc-ccc---ccc-chh----h--hHHHHhCCcEEEEE
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC-DSW---INT-VDM----R--AQYLRSKGILVWKL 594 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~-~~~---~~~-~~~----~--~~~l~~~G~~v~~~ 594 (776)
.+.+....+..+.+|++..... +...|+||+++||||+..+. ..+ ++. +.. + -.+--.+-..++.+
T Consensus 23 y~~v~~~~~~~lFywf~es~~~---~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~~~anvlfi 99 (255)
T 1whs_A 23 YITVDEGAGRSLFYLLQEAPED---AQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFL 99 (255)
T ss_dssp EEEEETTTTEEEEEEEECCCGG---GCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGGGTSEEEEE
T ss_pred EEECCCCCCcEEEEEEEEecCC---CCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCcccccccCCEEEE
Confidence 4555544678899998876432 24679999999999987643 111 000 000 0 00001123789999
Q ss_pred CC-CCCCCCchhhhhhhhhccC-CccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhh----C--CCceEE
Q 004067 595 DN-RGTARRGLKFEASIKHNCG-RIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR----F--PDVFQC 665 (776)
Q Consensus 595 d~-rg~g~~~~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~----~--~~~~~~ 665 (776)
|. .|.|.|-...... ....+ .....|+..+++...++ +.....++.|+|.|+||..+..+|.. . .--+++
T Consensus 100 DqPvGtGfSy~~~~~~-~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inLkG 178 (255)
T 1whs_A 100 DSPAGVGFSYTNTSSD-IYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKG 178 (255)
T ss_dssp CCSTTSTTCEESSGGG-GGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred ecCCCCccCCCcCccc-cccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccccce
Confidence 95 5888663221111 00011 12355666666655443 33455689999999999999888753 1 134789
Q ss_pred EEEcCCCCCcc
Q 004067 666 AVSGAPVTSWD 676 (776)
Q Consensus 666 ~v~~~~~~~~~ 676 (776)
+++.+|+++..
T Consensus 179 i~ign~~~d~~ 189 (255)
T 1whs_A 179 FMVGNGLIDDY 189 (255)
T ss_dssp EEEEEECCBHH
T ss_pred EEecCCccCHH
Confidence 99999988753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0019 Score=73.19 Aligned_cols=82 Identities=15% Similarity=-0.005 Sum_probs=45.1
Q ss_pred eEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeE--EE
Q 004067 393 RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH--VA 470 (776)
Q Consensus 393 ~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~--~~ 470 (776)
..|+.+|+.+++...-........+.. ++.+|..+|+. +.+ ..++.+++. .|+ .+..+....++. -+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~-~~~~g~~v~~g-~~d----g~l~a~D~~-tG~----~lw~~~~~~~~~~~p~ 525 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGT-LTTAGNVVFQG-TAD----GRLVAYHAA-TGE----KLWEAPTGTGVVAAPS 525 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCE-EEETTTEEEEE-CTT----SEEEEEETT-TCC----EEEEEECSSCCCSCCE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcc-eEeCCCEEEEE-CCC----CcEEEEECC-CCc----eeeeeeCCCCcccCCE
Confidence 589999998877433221111111111 45566765554 433 367888874 343 444444333322 24
Q ss_pred EEcCCcCEEEEEeeC
Q 004067 471 VLDHNMRNFVDFHDS 485 (776)
Q Consensus 471 ~~spdg~~l~~~~~~ 485 (776)
.+++||+.++...+.
T Consensus 526 ~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 526 TYMVDGRQYVSVAVG 540 (677)
T ss_dssp EEEETTEEEEEEEEC
T ss_pred EEEeCCEEEEEEecc
Confidence 667999888777555
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00099 Score=64.89 Aligned_cols=173 Identities=12% Similarity=-0.033 Sum_probs=99.8
Q ss_pred EEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 285 VRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..|.++|+++++... +.++ .......+ +.+|+.|+.... ....++++|+++.+...-....
T Consensus 44 s~v~~iD~~tg~v~~~i~l~--------~~~fgeGi--~~~g~~lyv~t~---~~~~v~viD~~t~~v~~~i~~g----- 105 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMD--------DSYFGEGL--TLLNEKLYQVVW---LKNIGFIYDRRTLSNIKNFTHQ----- 105 (266)
T ss_dssp CEEEEEETTTCCEEEEEECC--------TTCCEEEE--EEETTEEEEEET---TCSEEEEEETTTTEEEEEEECC-----
T ss_pred CEEEEEECCCCCEEEEEecC--------CCcceEEE--EEeCCEEEEEEe---cCCEEEEEECCCCcEEEEEECC-----
Confidence 568999999998654 3221 11122233 444666666543 3446899999987754332211
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccC--CeE---EEEEEeecCCCcEEEEEEccCCC
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEG--DWM---VEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~--~~~---~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
.+.+++++++++.+| .++. ...|+.+|+++.+ .+.+.-+ ... ...+. +. +| .+|+.....
T Consensus 106 ------~~~g~glt~Dg~~l~-vs~g--s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele-~~-dg-~lyvn~~~~-- 171 (266)
T 2iwa_A 106 ------MKDGWGLATDGKILY-GSDG--TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE-YI-NG-EVWANIWQT-- 171 (266)
T ss_dssp ------SSSCCEEEECSSSEE-EECS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE-EE-TT-EEEEEETTS--
T ss_pred ------CCCeEEEEECCCEEE-EECC--CCeEEEEECCCCcEEEEEEECCCCcccccceeEE-EE-CC-EEEEecCCC--
Confidence 023334456555554 5654 4599999998754 3444322 111 22333 55 55 566554332
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCC--------------CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNG--------------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~--------------~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
..|..+++. .|+ ....+... ...+.++++|+++++..+.... +.++++++..
T Consensus 172 --~~V~vID~~-tg~----V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~---~~v~~i~l~~ 237 (266)
T 2iwa_A 172 --DCIARISAK-DGT----LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW---PKLFEIKLHL 237 (266)
T ss_dssp --SEEEEEETT-TCC----EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---SEEEEEEEEE
T ss_pred --CeEEEEECC-CCc----EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC---CeEEEEEEec
Confidence 378999985 233 33344321 1347889999999877776443 5788888744
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00049 Score=71.00 Aligned_cols=122 Identities=11% Similarity=-0.002 Sum_probs=73.5
Q ss_pred cCCCceeEcCCCCEEEEEeCCC-CcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 55 VAPTSIGFSPDDNLITYLLSPD-HSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
..|..++++|||+ |.++.... ......|+++|+++++.......+.. +.. .......+.++
T Consensus 67 ~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~------~~~-----------~~~~~~~v~vd 128 (343)
T 2qe8_A 67 DTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP------ITL-----------SNSFVNDLAVD 128 (343)
T ss_dssp SCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT------TSC-----------TTCCCCEEEEE
T ss_pred eEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh------hcc-----------cccccceEEEe
Confidence 3467889999986 55544320 00025799999999885433322110 000 01234678889
Q ss_pred ecCCCceEEEEe-----CCCcEEEEeCCCCccceecCCCCC----------------------------CCccCceeCCC
Q 004067 134 KTSSKKKIIMVP-----LPDGIYFQDLSCSKPELKLSSSSC----------------------------SPVIDPHLSSD 180 (776)
Q Consensus 134 p~~~dg~~l~~~-----~~~~l~~~d~~~~~~~~~l~~~~~----------------------------~~~~~~~~SpD 180 (776)
| ++..++++ .+..|+++|+.+++..+.+..... .....++||||
T Consensus 129 ~---~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d 205 (343)
T 2qe8_A 129 L---IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE 205 (343)
T ss_dssp T---TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT
T ss_pred c---CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccC
Confidence 8 87777776 346799999988776522321000 01345789999
Q ss_pred CCEEEEEEC--CcEEEEec
Q 004067 181 GTMIAFVRD--CELHVLNL 197 (776)
Q Consensus 181 g~~la~~~~--~~l~~~~l 197 (776)
|+.|++... ..||.++.
T Consensus 206 g~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 206 NEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp SCEEEEEESSCSEEEEEEH
T ss_pred CCEEEEEeCCCCeEEEEEH
Confidence 988877754 36888775
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00025 Score=72.53 Aligned_cols=253 Identities=12% Similarity=0.059 Sum_probs=131.4
Q ss_pred eeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCC-------------------CCCccCceeCCCCCEEEE
Q 004067 127 VTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSS-------------------CSPVIDPHLSSDGTMIAF 186 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~-------------------~~~~~~~~~SpDg~~la~ 186 (776)
...+.|++ +|+.++.. .++.|+++|..+++.+ .+.... ......+.+.+++..|.+
T Consensus 21 p~~i~~d~---~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 21 PNSFTFDS---TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp CCCEECCT---TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred ceEEEEcC---CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 34577888 98855554 5678999999887654 332100 012345677873334444
Q ss_pred EE-CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCC
Q 004067 187 VR-DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSS 264 (776)
Q Consensus 187 ~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (776)
.. ...|++++++++..+.+...... ..+.....+++.| ||+ |++...... ...
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~-------------~~~~~p~~i~~d~~~G~-l~v~d~~~~-~~~---------- 151 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDG-------------VPFKWLYAVTVDQRTGI-VYFTDVSTL-YDD---------- 151 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETT-------------EECSCEEEEEECTTTCC-EEEEESCSS-CCT----------
T ss_pred EECCCCEEEEeCCCCEEEEecccCCC-------------CcccccceEEEecCCCE-EEEECCccc-ccc----------
Confidence 43 34588888887776655321110 0011134678999 885 555432110 000
Q ss_pred CCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEE
Q 004067 265 VGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF 344 (776)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 344 (776)
. ...+.. ........|+++|.++++...+... ......++|+|||+.|+++.. ....|+++
T Consensus 152 ---~---~~~~~~-~~~~~~g~v~~~d~~~~~~~~~~~~---------~~~p~gia~~~dg~~lyv~d~---~~~~I~~~ 212 (322)
T 2fp8_A 152 ---R---GVQQIM-DTSDKTGRLIKYDPSTKETTLLLKE---------LHVPGGAEVSADSSFVLVAEF---LSHQIVKY 212 (322)
T ss_dssp ---T---CHHHHH-HHTCCCEEEEEEETTTTEEEEEEEE---------ESCCCEEEECTTSSEEEEEEG---GGTEEEEE
T ss_pred ---c---ccceeh-cccCCCceEEEEeCCCCEEEEeccC---------CccCcceEECCCCCEEEEEeC---CCCeEEEE
Confidence 0 000000 0001125689999998876654221 112335899999987766543 23469999
Q ss_pred ECCCC---ceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC---------CceEEEEEeCCCceeeccccCC
Q 004067 345 DIKTG---QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT---------GFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 345 d~~~g---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
+++++ ..+.+... .. +.++..++++-+|+++.. ....|++++.+|.....+...+
T Consensus 213 ~~~~~~~~~~~~~~~~--~g-----------P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~ 279 (322)
T 2fp8_A 213 WLEGPKKGTAEVLVKI--PN-----------PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP 279 (322)
T ss_dssp ESSSTTTTCEEEEEEC--SS-----------EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCT
T ss_pred ECCCCcCCccceEEeC--CC-----------CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCC
Confidence 98763 33333321 10 112233344434555432 1357999998876665554332
Q ss_pred ----eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 413 ----WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 413 ----~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
..+.... + ++..||+..... ..|.++++
T Consensus 280 g~~~~~~~~~~-~--~~g~L~v~~~~~----~~i~~~~~ 311 (322)
T 2fp8_A 280 PFAGEHFEQIQ-E--HDGLLYIGTLFH----GSVGILVY 311 (322)
T ss_dssp TTTTSCCCEEE-E--ETTEEEEECSSC----SEEEEEEC
T ss_pred CCccccceEEE-E--eCCEEEEeecCC----CceEEEec
Confidence 1122222 2 345677776543 25666665
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0031 Score=71.34 Aligned_cols=80 Identities=11% Similarity=-0.028 Sum_probs=45.0
Q ss_pred EEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEE
Q 004067 339 LKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQ 417 (776)
Q Consensus 339 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~ 417 (776)
..|+.+|+++|+..--.....+.|... ++ ..++++|+...+| .|+.+|+.+++. .++..+......
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~----------~~-~~g~~v~~g~~dg--~l~a~D~~tG~~lw~~~~~~~~~~~ 523 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGT----------LT-TAGNVVFQGTADG--RLVAYHAATGEKLWEAPTGTGVVAA 523 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCE----------EE-ETTTEEEEECTTS--EEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcc----------eE-eCCCEEEEECCCC--cEEEEECCCCceeeeeeCCCCcccC
Confidence 789999999998654444332222110 11 1344666666677 899999887653 334333222223
Q ss_pred EEeecCCCcEEEEE
Q 004067 418 IVGVNEASGQVYFT 431 (776)
Q Consensus 418 ~~~~s~dg~~i~~~ 431 (776)
+..++.+|+..+..
T Consensus 524 p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 524 PSTYMVDGRQYVSV 537 (677)
T ss_dssp CEEEEETTEEEEEE
T ss_pred CEEEEeCCEEEEEE
Confidence 33456777654433
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.96 E-value=4.7e-05 Score=86.44 Aligned_cols=144 Identities=11% Similarity=-0.052 Sum_probs=91.9
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCC----CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT----CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
..+..++|++++++|+|..... ..|+++++++ .....+.... ......+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~----~~I~~~~~~g~~~~~~~~~~i~~~-----------------------~~~P~gl 458 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQ----RMICSTQLDRAHGVSSYDTVISRD-----------------------IQAPDGL 458 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTT----TSBEEEESCCCCC-CCCCCBCCSC-----------------------C--CCCE
T ss_pred cceEEEccccccCeEEEEecCC----CeEEEEecCCCCCCcceEEEEeCC-----------------------CCCcceE
Confidence 3467899999999998876543 4699999986 2222222100 0122345
Q ss_pred EEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC---CcEEEEecCCCceeEE
Q 004067 131 EWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD---CELHVLNLLINEQRQL 205 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g~~~~l 205 (776)
++.+ .+..|+++ ..+.|++++++++..+ .+..........+++.|++..|.++.. ..|+++++++...+.+
T Consensus 459 avD~---~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 459 AVDW---IHSNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp ECCC---SSSBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred EEEe---eCCcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 6666 67777776 4567999999988766 443322223567889998877666542 4688888876655544
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
..... ....+++|+|++++|++..
T Consensus 535 ~~~~l-----------------~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 535 VTENI-----------------QWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp SCSSC-----------------SSCCCEEECTTTCCEEEEE
T ss_pred EeCCC-----------------CCccEEEEeccCCEEEEEe
Confidence 32211 1134789999999888754
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0049 Score=65.52 Aligned_cols=153 Identities=10% Similarity=-0.004 Sum_probs=91.2
Q ss_pred eeeEEEeecCCC-ceEEEEeCC-CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC------cEEEEecC
Q 004067 127 VTRYEWVKTSSK-KKIIMVPLP-DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC------ELHVLNLL 198 (776)
Q Consensus 127 ~~~~~~sp~~~d-g~~l~~~~~-~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~------~l~~~~l~ 198 (776)
...+.++| + +..|++... ..|+++|++++..+ .+... ......++|+++|+.|.+.... .++.++.+
T Consensus 139 P~~lavdp---~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~-~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 139 AVWLSFDP---KNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSG-LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCEEEEET---TEEEEEEEEEBTEEEEEEETTTTEEE-EEECC-CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCEEEECC---CCCCeEEEEeCCCcEEEEECCCCEEE-EEecC-CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 34567885 5 455666533 78999999998876 44332 2236678999999976555431 35555554
Q ss_pred CCce--eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 INEQ--RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
++-. +.+... .....++++|++..|++.....
T Consensus 214 g~~~~~~~l~~~-------------------~~p~giavdp~~g~lyv~d~~~--------------------------- 247 (430)
T 3tc9_A 214 SGFKVITELTKG-------------------QNCNGAETHPINGELYFNSWNA--------------------------- 247 (430)
T ss_dssp GTSCSEEEEEEC-------------------SSCCCEEECTTTCCEEEEETTT---------------------------
T ss_pred CceeeeeeeccC-------------------CCceEEEEeCCCCEEEEEECCC---------------------------
Confidence 4322 222211 1134678999655676654211
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..|++++.++++...+.. ......-..++|+|||+.|++... . ...|++++.++
T Consensus 248 --------~~V~~~~~~~~~~~~~~~-------~~~~~~P~gia~~pdG~~lyv~d~-~--~~~I~~~~~d~ 301 (430)
T 3tc9_A 248 --------GQVFRYDFTTQETTPLFT-------IQDSGWEFHIQFHPSGNYAYIVVV-N--QHYILRSDYDW 301 (430)
T ss_dssp --------TEEEEEETTTTEEEEEEE-------CSSSSCCEEEEECTTSSEEEEEET-T--TTEEEEEEEET
T ss_pred --------CEEEEEECCCCcEEEEEE-------cCCCCcceeEEEcCCCCEEEEEEC-C--CCEEEEEeCCc
Confidence 357899998887644322 112234557999999997766642 2 23577766653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0039 Score=60.33 Aligned_cols=212 Identities=14% Similarity=0.120 Sum_probs=122.7
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+++.++|.||+++|+.+.+.. ..|+.+|+++...+++.- .. ........+.+
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~----~~I~~ld~~g~v~~~i~l-~g----------------------~~D~EGIa~~~- 79 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKP----AAIVEMTTNGDLIRTIPL-DF----------------------VKDLETIEYIG- 79 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETT----EEEEEEETTCCEEEEEEC-SS----------------------CSSEEEEEECS-
T ss_pred CcceeEEeCCCCEEEEEECCC----CeEEEEeCCCCEEEEEec-CC----------------------CCChHHeEEeC-
Confidence 358899999999998877654 579999999444444431 00 02345677888
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCcc-c--eecC-----CCCCCCccCceeCCCCCEEEEEECC---cEEEEe--cCCCc
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKP-E--LKLS-----SSSCSPVIDPHLSSDGTMIAFVRDC---ELHVLN--LLINE 201 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~-~--~~l~-----~~~~~~~~~~~~SpDg~~la~~~~~---~l~~~~--l~~g~ 201 (776)
+|..++.. .+..|+++++..... . .... .........++|+|++++|..+... .||.++ +.+..
T Consensus 80 --~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 80 --DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE 157 (255)
T ss_dssp --TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred --CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence 88764443 556788887654432 1 0111 0111124678999999988777654 477777 11111
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
. .+..... +...-.+.-..++++.|....++..+...
T Consensus 158 l-~i~~~~~----------~~~~~~~~d~S~l~~dp~tg~lliLS~~s-------------------------------- 194 (255)
T 3qqz_A 158 L-HISKDKA----------LQRQFTLDDVSGAEFNQQKNTLLVLSHES-------------------------------- 194 (255)
T ss_dssp C-EEEECHH----------HHHTCCSSCCCEEEEETTTTEEEEEETTT--------------------------------
T ss_pred e-eeecchh----------hccccccCCceeEEEcCCCCeEEEEECCC--------------------------------
Confidence 1 2211100 00000011246888999988888877422
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..|..+|.++.....+.+..+...+......-..+++.++|+ |++++. . .-+|++...+
T Consensus 195 ---~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE-~---n~~y~f~~~~ 253 (255)
T 3qqz_A 195 ---RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE-P---NRFYRFTPQS 253 (255)
T ss_dssp ---TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET-T---TEEEEEEC--
T ss_pred ---CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC-C---ceEEEEEecC
Confidence 347788888776666666432211112223456799999997 555542 2 2578776544
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0079 Score=68.20 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=45.5
Q ss_pred eEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCe--EE
Q 004067 393 RHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK--HV 469 (776)
Q Consensus 393 ~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~--~~ 469 (776)
..|+.||+.+++... +..+....... ++..|..+ |..+.+ ..|+.++.. .|+ .+-++....++ .-
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~--~~tagglv-f~gt~d----g~l~a~D~~-tG~----~lw~~~~~~~~~~~p 522 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGT--LSTAGNLV-FEGSAD----GRVIAYAAD-TGE----KLWEQPAASGVMAAP 522 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCE--EEETTTEE-EEECTT----SEEEEEETT-TCC----EEEEEECSSCCCSCC
T ss_pred eeEEEEECCCCCeEeEccCCCCccCcc--ceECCCEE-EEECCC----CcEEEEECC-CCc----cceeeeCCCCcccCc
Confidence 479999998887543 22221111122 44556644 444443 367777874 354 44444433332 23
Q ss_pred EEEcCCcCEEEEEeeC
Q 004067 470 AVLDHNMRNFVDFHDS 485 (776)
Q Consensus 470 ~~~spdg~~l~~~~~~ 485 (776)
++++.||++++.+.+.
T Consensus 523 ~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 523 VTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred eEEEECCEEEEEEEec
Confidence 4678999988887765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00029 Score=76.00 Aligned_cols=91 Identities=8% Similarity=-0.005 Sum_probs=61.3
Q ss_pred CceEEEEeC--CCcEEEEeCCCCccce--ecCCCCCCCccCcee-C-CCCCEEEEEEC-------------------CcE
Q 004067 138 KKKIIMVPL--PDGIYFQDLSCSKPEL--KLSSSSCSPVIDPHL-S-SDGTMIAFVRD-------------------CEL 192 (776)
Q Consensus 138 dg~~l~~~~--~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~-S-pDg~~la~~~~-------------------~~l 192 (776)
||+++++.. +..|-++|+++.+... .+..+. .....++ + ||++++..... +.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 999999984 4559999999988662 222222 2556676 6 99999855531 137
Q ss_pred EEEecCCCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 193 HVLNLLINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 193 ~~~~l~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
-++|.++.+.. |+...+. ...+..||||++++..+.+.
T Consensus 178 tvID~~t~~v~~qI~Vgg~-------------------pd~~~~spdGk~~~vt~~~s 216 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGN-------------------LDNCDADYEGKWAFSTSYNS 216 (595)
T ss_dssp EEEETTTTEEEEEEEESSC-------------------CCCEEECSSSSEEEEEESCT
T ss_pred EEEECCCCeEEEEEEeCCC-------------------ccceEECCCCCEEEEEecCc
Confidence 88898887653 4433332 23577999999887776543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0027 Score=67.50 Aligned_cols=140 Identities=9% Similarity=0.037 Sum_probs=87.1
Q ss_pred CCCceeEcCC--CCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 56 APTSIGFSPD--DNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 56 ~~~~~~~SpD--G~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
.|..++|+|| +..|++.... ..|+++++++++...+... ......+.++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-----~~I~~id~~~g~v~~~~~~------------------------~~~P~giavd 190 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-----DAFRHVDFVNQYVDIKTTN------------------------IGQCADVNFT 190 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-----SCEEEEETTTTEEEEECCC------------------------CSCEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCC-----CCEEEEECCCCEEEEeecC------------------------CCCccEEEEC
Confidence 4688999995 5667665442 4699999998888766531 1246678899
Q ss_pred ecCCCceEEEEeCC------CcEEEEeCCCCccc-eecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCce-e
Q 004067 134 KTSSKKKIIMVPLP------DGIYFQDLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQ-R 203 (776)
Q Consensus 134 p~~~dg~~l~~~~~------~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~-~ 203 (776)
+ ||+ |+++.. ..++.++..++... ..+.. ......+++.|++..|.+... +.|+++++++|.. +
T Consensus 191 ~---dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~ 264 (433)
T 4hw6_A 191 L---NGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE 264 (433)
T ss_dssp T---TCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE
T ss_pred C---CCC-EEEEcCCCCcccceEEEEECCCCeeccccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE
Confidence 9 999 766632 23666665544331 02221 123456889995444544432 4699999998876 4
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
.+...+.. .| ...++|+|||++|++..
T Consensus 265 ~~~~~~~~--------~~--------~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 265 EEVMMDTK--------GS--------NFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp EEEECSCC--------SS--------CEEEEECTTSSEEEEEE
T ss_pred EEeccCCC--------CC--------cccEEEeCCCCEEEEEe
Confidence 44332211 01 12588999999777654
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.85 E-value=6.5e-05 Score=79.55 Aligned_cols=142 Identities=13% Similarity=0.050 Sum_probs=82.6
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccc--cchh------h--hHHHHhCCcEEEEECC-
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDM------R--AQYLRSKGILVWKLDN- 596 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~--~~~~------~--~~~l~~~G~~v~~~d~- 596 (776)
.++..++..+.+|++..... +...|+||++|||||+..+...+.. .+.. + -.+--..-..++.+|.
T Consensus 25 yv~v~~~~~lfy~f~~s~~~---~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw~~~~~~lfiDqP 101 (452)
T 1ivy_A 25 YLKSSGSKHLHYWFVESQKD---PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESP 101 (452)
T ss_dssp EEECSTTEEEEEEEECCSSC---GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCS
T ss_pred EEeeCCCCeEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCcccccccEEEEecC
Confidence 44555678899998865432 2457999999999998754211100 0000 0 0000123478999995
Q ss_pred CCCCCCchhhhhhhhhccCCccHHHHHHHHH-HHHHcCCCCCCcEEEEeechHHHHHHHHHhh----CCCceEEEEEcCC
Q 004067 597 RGTARRGLKFEASIKHNCGRIDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLAR----FPDVFQCAVSGAP 671 (776)
Q Consensus 597 rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~----~~~~~~~~v~~~~ 671 (776)
+|.|.|-.... ....-......|+..++. ++...+.....++.|+|+|+||..+..+|.. .+-.++++++.+|
T Consensus 102 ~GtGfS~~~~~--~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~ign~ 179 (452)
T 1ivy_A 102 AGVGFSYSDDK--FYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNG 179 (452)
T ss_dssp TTSTTCEESSC--CCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESC
T ss_pred CCCCcCCcCCC--CCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEEecCC
Confidence 78887642110 000000012344444444 4444334456789999999999966666643 3456899999999
Q ss_pred CCC
Q 004067 672 VTS 674 (776)
Q Consensus 672 ~~~ 674 (776)
+++
T Consensus 180 ~~d 182 (452)
T 1ivy_A 180 LSS 182 (452)
T ss_dssp CSB
T ss_pred ccC
Confidence 876
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0069 Score=68.69 Aligned_cols=82 Identities=9% Similarity=-0.071 Sum_probs=48.0
Q ss_pred eEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccCCeEEE
Q 004067 338 KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVE 416 (776)
Q Consensus 338 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~~~~~~ 416 (776)
...|+.||+++|+..--.....+.+.. .+ ...++++|+...+| .|+.+|.++|+.. ++..+.....
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g---~~--------~tagglvf~gt~dg--~l~a~D~~tG~~lw~~~~~~~~~~ 520 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGG---TL--------STAGNLVFEGSADG--RVIAYAADTGEKLWEQPAASGVMA 520 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCC---EE--------EETTTEEEEECTTS--EEEEEETTTCCEEEEEECSSCCCS
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCc---cc--------eECCCEEEEECCCC--cEEEEECCCCccceeeeCCCCccc
Confidence 378999999999876544443322210 11 12455778877777 8999998877643 3333322222
Q ss_pred EEEeecCCCcEEEEEE
Q 004067 417 QIVGVNEASGQVYFTG 432 (776)
Q Consensus 417 ~~~~~s~dg~~i~~~~ 432 (776)
.+..++.||++.+...
T Consensus 521 ~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 521 APVTYSVDGEQYVTFM 536 (689)
T ss_dssp CCEEEEETTEEEEEEE
T ss_pred CceEEEECCEEEEEEE
Confidence 3344677887544443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.036 Score=64.30 Aligned_cols=293 Identities=9% Similarity=0.032 Sum_probs=153.4
Q ss_pred eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCC-CCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEE
Q 004067 127 VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSS-SCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQL 205 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~l 205 (776)
+..+...+ +|+..+.+.++.|++++..+++.+ .+... ....+..+...++|...+-+..+-|++++..+++.+.+
T Consensus 175 i~~i~~d~---~g~lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQ---GDQIYIGTSTDGLYTYSITQKTFE-KVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEE---TTEEEEEESSSCEEEEETTTCCEE-ECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECC---CCCEEEEECCCCEEEEeCCCCeEE-EecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEe
Confidence 66677777 887555555567999999887765 44221 11224444455566544444345699999988877766
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
........ .++. ..+..+...++|. |...+..
T Consensus 251 ~~~~~~~~---~l~~-------~~i~~i~~d~~g~-lWigt~~------------------------------------- 282 (795)
T 4a2l_A 251 LHSPSNPK---SISS-------NYIRSLAMDSQNR-LWIGTFN------------------------------------- 282 (795)
T ss_dssp CCCTTCTT---SCSC-------SBEEEEEECTTSC-EEEEESS-------------------------------------
T ss_pred ecCCCCcc---ccCC-------CeEEEEEEcCCCC-EEEEeCC-------------------------------------
Confidence 54321000 0000 0123444555554 3333311
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeec
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 365 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 365 (776)
.|++++..+++...+......+. .-....+..+...++|.+. +.+. ..-|+.++..++..+.+.......-...
T Consensus 283 Gl~~~~~~~~~~~~~~~~~~~~~-~l~~~~i~~i~~D~~g~lW-igt~----~~Gl~~~~~~~~~~~~~~~~~~~~~l~~ 356 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNPVENG-SLSQRSVRSIFMDSQGGMW-LGTY----FGGLNYYHPIRNRFKNIRNIPYKNSLSD 356 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTSTT-SCSSSCEEEEEECTTSCEE-EEES----SSCEEEECGGGGSSEEECCCTTSSSCSC
T ss_pred hhheEcCCCCeEEEEecCCCCCC-CCCCCcEEEEEEeCCcCEE-EEEC----CCCeEEeCCCcccceEEcCCCCCCCCCC
Confidence 26788888887766643211110 1123457788888888733 3332 2237888887776655433211100000
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccC---------CeEEEEEEeecCCCcEEEEEEccCC
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG---------DWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~---------~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
+... .+..+.++-+|+...++ .|++++..++..+.+... ...+..+. .+.+|+.|++.+...
T Consensus 357 ~~V~-----~i~~d~~g~lWiGt~~~--Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~-~d~~g~~lWigt~~~- 427 (795)
T 4a2l_A 357 NVVS-----CIVEDKDKNLWIGTNDG--GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVY-VDEKKSLVYIGTHAG- 427 (795)
T ss_dssp SSEE-----EEEECTTSCEEEEESSS--CEEEECTTTCCEEEECCC------CCSCSCEEEEE-EETTTTEEEEEETTT-
T ss_pred CeeE-----EEEECCCCCEEEEECCC--CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEE-EcCCCCEEEEEeCcC-
Confidence 0000 11223444455554443 488999887766555321 12344443 566776455544322
Q ss_pred CceeeEEEEEeCCCCCCccccceeecC------CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 437 PLESHLYCAKLYPDWNHTLEAPVKLTN------GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 437 ~~~~~l~~~~~~~~g~~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
.|+.++..+ + ..+.+.. ...+..+...++|+.++-+. . .|++++..+++.
T Consensus 428 ----Gl~~~d~~~-~-----~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~---~---Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 428 ----GLSILHRNS-G-----QVENFNQRNSQLVNENVYAILPDGEGNLWLGTL---S---ALVRFNPEQRSF 483 (795)
T ss_dssp ----EEEEEETTT-C-----CEEEECTTTSCCSCSCEEEEEECSSSCEEEEES---S---CEEEEETTTTEE
T ss_pred ----ceeEEeCCC-C-----cEEEeecCCCCcCCCeeEEEEECCCCCEEEEec---C---ceeEEeCCCCeE
Confidence 477777631 2 3344332 12356677788887665543 1 388888876653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0051 Score=58.59 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=113.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..+.|++ .+|+......+ ...|..+|+++|+..+-...+. ....-..++
T Consensus 24 qGL~~~~--~~LyestG~~g--~S~v~~vD~~tgkv~~~~~l~~------------------------~~fgeGi~~--- 72 (243)
T 3mbr_X 24 EGLFYLR--GHLYESTGETG--RSSVRKVDLETGRILQRAEVPP------------------------PYFGAGIVA--- 72 (243)
T ss_dssp EEEEEET--TEEEEEECCTT--SCEEEEEETTTCCEEEEEECCT------------------------TCCEEEEEE---
T ss_pred ccEEEEC--CEEEEECCCCC--CceEEEEECCCCCEEEEEeCCC------------------------CcceeEEEE---
Confidence 4667775 45554433222 3689999999998755443221 233334566
Q ss_pred CceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCcee-EEeeCCCCC
Q 004067 138 KKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQR-QLTHGANGN 212 (776)
Q Consensus 138 dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~-~lt~~~~~~ 212 (776)
+|++|+.. .++.++++|.++.+....+.... ....+++||++| |+++ +.|+++|+++.+.. .+.....+
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~----~Gwglt~dg~~L-~vSdgs~~l~~iDp~t~~~~~~I~V~~~g- 146 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG----EGWALTSDDSHL-YMSDGTAVIRKLDPDTLQQVGSIKVTAGG- 146 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS----CCCEEEECSSCE-EEECSSSEEEEECTTTCCEEEEEECEETT-
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC----CceEEeeCCCEE-EEECCCCeEEEEeCCCCeEEEEEEEccCC-
Confidence 78888876 57889999999988774554322 235777899865 4454 46999999987653 33222111
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
.+ +...+.+.|. ||+ |+ +..-.+ ..|.++|+
T Consensus 147 -----~~-------~~~lNeLe~~-~G~-ly-anvw~s----------------------------------~~I~vIDp 177 (243)
T 3mbr_X 147 -----RP-------LDNLNELEWV-NGE-LL-ANVWLT----------------------------------SRIARIDP 177 (243)
T ss_dssp -----EE-------CCCEEEEEEE-TTE-EE-EEETTT----------------------------------TEEEEECT
T ss_pred -----cc-------cccceeeEEe-CCE-EE-EEECCC----------------------------------CeEEEEEC
Confidence 00 0011234454 554 43 432110 35899999
Q ss_pred CCCce-EEEEcccCCCCC----CCCcceEEEEEeccCCeEEEEEEe
Q 004067 293 AGGPV-SWMDLQCGGTDQ----NYDEEYLARVNWMHGNILTAQVLN 333 (776)
Q Consensus 293 ~~~~~-~~l~~~~~~~~~----~~~~~~~~~~~~SpDg~~l~~~~~ 333 (776)
++|++ ..+++....+.. .........++|+|+++.++.+.-
T Consensus 178 ~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 178 ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99986 456654221111 122345678999999987776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 776 | ||||
| d1xfda1 | 465 | b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik | 1e-47 | |
| d2bgra1 | 470 | b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, | 1e-35 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 1e-33 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 8e-28 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 4e-20 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 1e-19 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 2e-19 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 9e-19 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 9e-18 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 6e-17 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 8e-17 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 2e-16 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 6e-16 | |
| d2jbwa1 | 360 | c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h | 6e-15 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 2e-11 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 3e-10 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 4e-10 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 7e-10 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 2e-09 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 1e-07 | |
| d1jjfa_ | 255 | c.69.1.2 (A:) Feruloyl esterase domain of the cell | 5e-07 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 6e-07 | |
| d1dina_ | 233 | c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas | 1e-06 | |
| d1qlwa_ | 318 | c.69.1.15 (A:) A novel bacterial esterase {Alcalig | 8e-06 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 8e-05 | |
| d3b5ea1 | 209 | c.69.1.14 (A:7-215) Uncharacterized protein Mll837 | 2e-04 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 4e-04 | |
| d1k32a2 | 281 | b.68.7.1 (A:39-319) Tricorn protease N-terminal do | 8e-04 |
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 174 bits (440), Expect = 1e-47
Identities = 77/430 (17%), Positives = 152/430 (35%), Gaps = 21/430 (4%)
Query: 94 ELVFSPPDGGLDENNI-SPEEKLRRERLRERGLGVTRYEWVKTSSK-------KKIIMVP 145
E ++ G + N+ + + E + L RYE + I
Sbjct: 29 EFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88
Query: 146 LPDGIYFQDLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQ 204
+ P+ L S + + G + F+ + ++ + + +
Sbjct: 89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR 148
Query: 205 LTHGANGNTVTHGLAEYIAQEEMDR-KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKS 263
+ + +GL++++ +EE+ + +WWS D +A+ ++ S +P + +
Sbjct: 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY--T 206
Query: 264 SVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH 323
+ + YP AG+ N + L V+ G + D E Y+ V W
Sbjct: 207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD--DPRMREYYITMVKWAT 264
Query: 324 GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK-GVTKYSGG 382
+ LNR+Q + D TG +E ++W++ + K G +
Sbjct: 265 STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324
Query: 383 FIWASEKTGFRHLYLH----DINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 438
I + F H+ + + + + IT GDW V +I+ +E ++YF T D P
Sbjct: 325 AIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPR 384
Query: 439 ESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498
LY A ++N + L A H+M F+ + P + +
Sbjct: 385 RRQLYSANTVGNFNRQCLSC-DLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTT 442
Query: 499 DGSLVLPLYE 508
D + L
Sbjct: 443 DKKKMFDLET 452
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 138 bits (348), Expect = 1e-35
Identities = 70/486 (14%), Positives = 150/486 (30%), Gaps = 50/486 (10%)
Query: 41 FSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPP 100
++L + +++ + S+ + D + + + F+ + +
Sbjct: 5 YTLTDYLKNTY--RLKLYSLRWISDHEYL-------YKQENNILVFNAEYGNSSVFLENS 55
Query: 101 DGGLDENNI-----SPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDL 155
++I SP+ + ++ Y
Sbjct: 56 TFDEFGHSINDYSISPDGQ-----------------FILLEYNYVKQWRHSYTASYDI-Y 97
Query: 156 SCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVT 215
+K +L + S G +A+V + +++V ++T + +
Sbjct: 98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIY 157
Query: 216 HGLAEYIAQE-EMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274
+G+ +++ +E + WWS + F+A+ Q + +E+P S+
Sbjct: 158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217
Query: 275 YPFAGASNVKVRLGVVSAAGGPVSWMDL---QCGGTDQNYDEEYLARVNWMHGNILTAQV 331
YP AGA N V+ VV+ + YL V W ++ Q
Sbjct: 218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277
Query: 332 LNRSQ--TKLKVLKFDIKTGQRKVILV-----EELDSWVNLHDCFTPLDKGVTKYSGGFI 384
L R Q + + + +D +G+ ++ WV P + +
Sbjct: 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH--FTLDGNSFYK 335
Query: 385 WASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG--PLESHL 442
S + G+RH+ I+ IT+G W V I + +Y+ P +L
Sbjct: 336 IISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTS--DYLYYISNEYKGMPGGRNL 393
Query: 443 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502
Y +L T + + + + P L S +
Sbjct: 394 YKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH-SSVNDKG 452
Query: 503 VLPLYE 508
+ L +
Sbjct: 453 LRVLED 458
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 127 bits (320), Expect = 1e-33
Identities = 68/252 (26%), Positives = 114/252 (45%), Gaps = 14/252 (5%)
Query: 533 DGTVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI 589
D L + KP ++ Y L+ V G P Q V + + V + S G
Sbjct: 11 DDYNLPMQILKPATFTDTT----HYPLLLVVDGTPGSQSVAEKF--EVSWETVMVSSHGA 64
Query: 590 LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG 649
+V K D RG+ +G K ++ G ++ +DQ+ ++K+ + ++G YGG
Sbjct: 65 VVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGG 124
Query: 650 YLSAITLARFPDV----FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 705
YLS L + F C + +P+T + Y + ++E+Y+GL D YE + V H
Sbjct: 125 YLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEMTKVAHR 184
Query: 706 VH-KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 764
V + + L++H DE +HF+HTA LI L+ + Y + I+PDE H + ++
Sbjct: 185 VSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHL 244
Query: 765 EERIWEFIERTL 776
I F
Sbjct: 245 YRSIINFFVECF 256
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 111 bits (276), Expect = 8e-28
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 12/260 (4%)
Query: 523 PPDIVQIQANDGTVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM 579
P + + T + + P D+S+ Y L+ VY GPC Q + ++
Sbjct: 2 PSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKADTVF--RLNW 55
Query: 580 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
++ I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 56 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 115
Query: 640 IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEY 699
I ++GWSYGGY++++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ + Y
Sbjct: 116 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 175
Query: 700 ---SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 756
+ + + + + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 176 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIA 235
Query: 757 RHRDRIYMEERIWEFIERTL 776
++ + FI++
Sbjct: 236 SSTAHQHIYTHMSHFIKQCF 255
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 88.5 bits (218), Expect = 4e-20
Identities = 28/267 (10%), Positives = 48/267 (17%), Gaps = 45/267 (16%)
Query: 508 EQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPP-PYKTLISVYGGPCV 566
++ + D P+ P Y L + G +
Sbjct: 5 DKGSVFYHFSATSFDSVD-------GTRHYRVWTAVPNT--TAPASGYPILYMLDGNAVM 55
Query: 567 QLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGA 626
+ D Q ++ + + L A D +G
Sbjct: 56 DRLDDEL------LKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGR 109
Query: 627 EWLIKQGLAKV--------------------GHIGLYGWSYGGYLSAITLARFPDVFQCA 666
G GL+G SYGG + F+
Sbjct: 110 FSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSY-FRSY 168
Query: 667 VSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHF 726
S +P + H +
Sbjct: 169 YSASPSLGRGYDALLSRVTAVEPLQFCT--------KHLAIMEGSATQGDNRETHAVGVL 220
Query: 727 RHTARLINALVAARKPYEILIFPDERH 753
+ L FP+ H
Sbjct: 221 SKIHTTLTILKDKGVNAVFWDFPNLGH 247
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 87.3 bits (214), Expect = 1e-19
Identities = 58/268 (21%), Positives = 102/268 (38%), Gaps = 14/268 (5%)
Query: 513 VPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDS 572
+P R + +V +++ DG+ + + + P P T++ V+GGP +
Sbjct: 1 LPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGR---APTPGPTVVLVHGGPFAE----- 52
Query: 573 WINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632
++ D A L + G V + RG+ E +K E + A +
Sbjct: 53 DSDSWDTFAASLAAAGFHVVMPNYRGSTGY--GEEWRLKIIGDPCGGELEDVSAAARWAR 110
Query: 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM----G 688
+ + G+SYGGY++ L P +F+ V+GA V W+ +
Sbjct: 111 ESGLASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQ 170
Query: 689 LPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 748
L S ++HV ++K L L+H D + RL+ L+A K +E I
Sbjct: 171 LTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHII 230
Query: 749 PDERHMPRRHRDRIYMEERIWEFIERTL 776
PD H D + + F+
Sbjct: 231 PDAGHAINTMEDAVKILLPAVFFLATQR 258
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 87.8 bits (216), Expect = 2e-19
Identities = 37/299 (12%), Positives = 69/299 (23%), Gaps = 54/299 (18%)
Query: 514 PRIKRLQLEPPDI----VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV 569
P +R++ + V G + G L P ++ G +
Sbjct: 41 PVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVPKL---EEEKLPCVVQYIGYNGGR-- 95
Query: 570 CDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN---------------- 613
+ S G + + +D RG LK +
Sbjct: 96 ------GFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGIL 149
Query: 614 -----CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 668
R D + E I + G S GG ++ A
Sbjct: 150 DPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCD 209
Query: 669 GAPVTSWDGYDTFYTE-------KYMGLPSEDPVGY----EYSSVMHHVHKMKGKLLLVH 717
+ + ++ + Y ++ + K L
Sbjct: 210 VPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSV 269
Query: 718 GMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
G++D N P EI I+P H +F+++
Sbjct: 270 GLMDNICPPSTVFAAYNYY---AGPKEIRIYPYNNHEGGGSFQA----VEQVKFLKKLF 321
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 85.6 bits (210), Expect = 9e-19
Identities = 35/294 (11%), Positives = 77/294 (26%), Gaps = 50/294 (17%)
Query: 514 PRIKRLQLEPPDI----VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV 569
P ++ + + + ++ + G P P+ ++ +G
Sbjct: 42 PDLQPVDYPADGVKVYRLTYKSFGNARITGWYAVP----DKEGPHPAIVKYHGYN----- 92
Query: 570 CDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID----------- 618
+ + G + + RG R + H G +
Sbjct: 93 --ASYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYY 150
Query: 619 ---AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675
D + E + IG+ G S GG L+ A ++++
Sbjct: 151 RGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNF 210
Query: 676 DGY-------------DTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE 722
+ F + Y +M+ ++K +L+ G+ID+
Sbjct: 211 ERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDK 270
Query: 723 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
N L E+ ++ H + F ++ L
Sbjct: 271 VTPPSTVFAAYNHL---ETKKELKVYRYFGHEYIPA-----FQTEKLAFFKQIL 316
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 84.0 bits (206), Expect = 9e-18
Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 10/164 (6%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI---NTVDMRAQY 583
V + DG LY + P + P + Y + + +
Sbjct: 31 VMVPMRDGVKLYTVIVIPKNA--RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDV 88
Query: 584 LRSKGILVWKLDNRGTARRGLKFE-----ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG 638
G + D RG + + + D +WL+ G
Sbjct: 89 FVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNG 148
Query: 639 HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682
+G+ G SY G+ + L + A +P+ D ++
Sbjct: 149 RVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDDWF 192
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 80.5 bits (198), Expect = 6e-17
Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 9/124 (7%)
Query: 639 HIGLYGWSYGGYLSAITLARFPDVFQCAVSG-APVTSWDGYDTFYTE------KYMGLPS 691
+ + G + GGY++A + DVF A + +YT + P+
Sbjct: 12 SVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPT 71
Query: 692 EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI--LIFP 749
+ + + + + + K+ + G D V +L L + +
Sbjct: 72 ANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTT 131
Query: 750 DERH 753
H
Sbjct: 132 GAVH 135
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 81.0 bits (198), Expect = 8e-17
Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 13/165 (7%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISV----YGGPCVQLVCDSWINTVDMRAQ 582
V I DG L+ + P G +++ G +L + +
Sbjct: 27 VMIPMRDGVKLHTVIVLPK----GAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDD 82
Query: 583 YLRSKGILVWKLDNRGTARRGLKFE-----ASIKHNCGRIDAEDQLTGAEWLIKQGLAKV 637
G + D RG + + A D +WL+K
Sbjct: 83 VFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN 142
Query: 638 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682
G +G+ G SY G+ + L + AV +P+ D ++
Sbjct: 143 GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDWF 187
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 77.9 bits (190), Expect = 2e-16
Identities = 45/270 (16%), Positives = 83/270 (30%), Gaps = 25/270 (9%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 586
+ + DGT + + + + + YGG + + + R ++R
Sbjct: 10 IFYPSKDGTKIPMFIVHKKGIKLDGS-HPAFLYGYGGFNISITPNYS----VSRLIFVRH 64
Query: 587 KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWS 646
G ++ + RG G + + +D AE+LIK+G + + G S
Sbjct: 65 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 124
Query: 647 YGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDP------------ 694
GG L A + PD+F C ++ V + +
Sbjct: 125 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKY 184
Query: 695 VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR-------KPYEILI 747
+ +LL+ D+ V H+ + I L P I +
Sbjct: 185 SPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHV 244
Query: 748 FPDERHMPRRHRD-RIYMEERIWEFIERTL 776
H + I ++ FI R L
Sbjct: 245 DTKAGHGAGKPTAKVIEEVSDMFAFIARCL 274
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 78.4 bits (192), Expect = 6e-16
Identities = 32/284 (11%), Positives = 64/284 (22%), Gaps = 66/284 (23%)
Query: 543 KPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR-AQYLRSKGILVWKLDNRGTAR 601
+ P K P V + + Y ++G + GT
Sbjct: 90 SHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRS 149
Query: 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKV--------------GHIGLYGWSY 647
+ +WL + A G + + G SY
Sbjct: 150 SDGFQTSG-----DYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSY 204
Query: 648 GGYLSAITLARFPDVFQCAVSGAPVTSW-------------------------------- 675
G ++ + + ++ A ++SW
Sbjct: 205 LGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRN 264
Query: 676 -------------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE 722
+ T + + + + + K+K +L+VHG+ D
Sbjct: 265 LDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDW 324
Query: 723 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEE 766
NV AL + + + E
Sbjct: 325 NVTPEQAYNFWKAL-PEGHAKHAFLHRGAHIYMNSWQSIDFSET 367
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 75.0 bits (183), Expect = 6e-15
Identities = 43/266 (16%), Positives = 80/266 (30%), Gaps = 34/266 (12%)
Query: 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR 580
L PP DG + + P+ GP P+ +I + G +S
Sbjct: 102 LSPPAERHELVVDGIPMPVYVRIPE----GPGPHPAVIMLGGL-------ESTKEESFQM 150
Query: 581 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW-LIKQGLAKVGH 639
+ +G+ D ++ D E + L K +
Sbjct: 151 ENLVLDRGMATATFDGP-------GQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDA 203
Query: 640 IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF---------YTEKYMGLP 690
IG+ G S GG + + A P +S + D +D Y K L
Sbjct: 204 IGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLE 262
Query: 691 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 750
+ + ++ ++HG+ DE V ++ + A +++ D
Sbjct: 263 EARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAEHL--NLVVEKD 319
Query: 751 ERHMPRRHRDRIYMEERIWEFIERTL 776
H H I + +++ L
Sbjct: 320 GDHC--CHNLGIRPRLEMADWLYDVL 343
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 62.1 bits (149), Expect = 2e-11
Identities = 33/228 (14%), Positives = 54/228 (23%), Gaps = 19/228 (8%)
Query: 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612
P L++++G + +G L+ D R +S
Sbjct: 23 PKALLLALHGLQ-------GSKEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSP 75
Query: 613 NCGRIDAEDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 668
L E + + L G S G +++ + LA
Sbjct: 76 RYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAF 135
Query: 669 GAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 728
E Y+ LL +HG D V
Sbjct: 136 IGSGFPMKLPQGQVVEDPG-----VLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLAR 190
Query: 729 TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776
+ + AL + F +E H M F+E L
Sbjct: 191 MEKTLEALRPHYPEGRLARFVEEGA---GHTLTPLMARVGLAFLEHWL 235
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 59.4 bits (142), Expect = 3e-10
Identities = 27/250 (10%), Positives = 60/250 (24%), Gaps = 18/250 (7%)
Query: 519 LQLEPPDIVQIQANDGTVLYGALYKPDESR----YGPP------PYKTLISVYGGPCVQL 568
+ P + G ++ + ++ Y P Y ++GG +
Sbjct: 10 YRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPYGYDPNKKYNIFYLMHGGGENEN 69
Query: 569 VCDSWINTV----DMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT 624
S + D + ++V G F + N T
Sbjct: 70 TIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYST 129
Query: 625 GA-EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 683
A + A H G G++ GG + + D + + +
Sbjct: 130 YAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQDKA 189
Query: 684 EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 743
+ + V + + M + + ++ +
Sbjct: 190 NSIAEAINRSGLSKREYFVFAATGS---EDIAYANMNPQIEAMKALPHFDYTSDFSKGNF 246
Query: 744 EILIFPDERH 753
L+ P H
Sbjct: 247 YFLVAPGATH 256
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 59.6 bits (143), Expect = 4e-10
Identities = 30/252 (11%), Positives = 57/252 (22%), Gaps = 39/252 (15%)
Query: 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG 588
++ N+G L+ P E+ P T++ G A+YL + G
Sbjct: 9 LRVNNGQELHVWETPPKEN--VPFKNNTILIASGFARRMDHFAGL-------AEYLSTNG 59
Query: 589 ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYG 648
V++ D+ SI +IGL S
Sbjct: 60 FHVFRYDSLH---HVGLSSGSIDEFTMTTGKNS---LCTVYHWLQTKGTQNIGLIAASLS 113
Query: 649 GYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYS-------- 700
++ ++ F G + E P ++
Sbjct: 114 ARVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEV 173
Query: 701 --------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 746
S + V L+ D+ V ++ +
Sbjct: 174 FVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTGHCKLY-- 231
Query: 747 IFPDERHMPRRH 758
H +
Sbjct: 232 SLLGSSHDLGEN 243
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 58.4 bits (140), Expect = 7e-10
Identities = 29/259 (11%), Positives = 62/259 (23%), Gaps = 37/259 (14%)
Query: 550 GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 609
G L + G W ++ G+ V ++ ++ +
Sbjct: 30 GGANSPALYLLDGLRAQDDF-SGWDINTPAF-EWYDQSGLSVVMPVGGQSSFYSDWYQPA 87
Query: 610 IKHNCGRIDAEDQLTGAE---WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666
+ + +E WL K + G S + P F A
Sbjct: 88 CGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYA 147
Query: 667 VSGAPVTS-----WDGYDTFYTEKYMGLPSEDPVG------YEYSSVMHHVHKMKGKLL- 714
+ + + G + D G ++ + + +V K+
Sbjct: 148 GAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTR 207
Query: 715 ----------------LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE-RHMPRR 757
+ E + +A A + FPD H
Sbjct: 208 VWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWEY 267
Query: 758 HRDRIYMEERIWEFIERTL 776
++ + ++R L
Sbjct: 268 WGAQL---NAMKPDLQRAL 283
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 28/158 (17%), Positives = 43/158 (27%), Gaps = 18/158 (11%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISV--YGGPCVQLVCDSWINTVDMRAQYL 584
V + DG L LY+PD P L+ Y V +T
Sbjct: 8 VMVPMRDGVRLAVDLYRPD----ADGPVPVLLVRNPYDKFDVFAW-----STQSTNWLEF 58
Query: 585 RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYG 644
G V D RG +F + D W+++Q G++G++G
Sbjct: 59 VRDGYAVVIQDTRGLFASEGEFVPHVDDEADAEDTLS------WILEQAWCD-GNVGMFG 111
Query: 645 WSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682
SY G + +
Sbjct: 112 VSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYG 149
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 51.5 bits (122), Expect = 1e-07
Identities = 20/228 (8%), Positives = 55/228 (24%), Gaps = 20/228 (8%)
Query: 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA 581
P + ++ ++ + + + G Q + +
Sbjct: 14 PAKEIIWKSERLKNSRRVWIFTTGD--VTAEERPLAVLLDGEFWAQ-----SMPVWPVLT 66
Query: 582 QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG 641
+ + + + + + +L +I +
Sbjct: 67 SLTHRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTV 126
Query: 642 LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSS 701
+ G S+GG + +P+ F C +S + W +
Sbjct: 127 VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG-----------GQQEGVLLEKL 175
Query: 702 VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 749
V +++L G+ + + R L L ++
Sbjct: 176 KAGEVSAEGLRIVLEAGIREPMIM-RANQALYAQLHPIKESIFWRQVD 222
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Score = 49.7 bits (117), Expect = 5e-07
Identities = 27/243 (11%), Positives = 57/243 (23%), Gaps = 26/243 (10%)
Query: 533 DGTVLYGALYKPDESRYGP-PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV 591
+ +Y P Y Y L ++G + ++ A L ++G +
Sbjct: 32 TNSTRPARVYLPPG--YSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIK 89
Query: 592 WKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYL 651
+ A N + + E H + G S GG
Sbjct: 90 PLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYIESNYSVY-TDREHRAIAGLSMGGGQ 148
Query: 652 SAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG 711
S D F + + + + + +
Sbjct: 149 SFNIGLTNLDKFAYIGPISAAPNTYPNERLFPDGG-----------------KAAREKLK 191
Query: 712 KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 771
L + G D + R+ VA + + H + ++ +
Sbjct: 192 LLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQGGGHDFNVWKPGLW---NFLQM 246
Query: 772 IER 774
+
Sbjct: 247 ADE 249
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 6e-07
Identities = 33/276 (11%), Positives = 67/276 (24%), Gaps = 50/276 (18%)
Query: 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--AQ 582
+ V+ + D T+ L + S + +I ++GG
Sbjct: 5 NTVRAISPDITLFNKTLTFQEIS---QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKS 61
Query: 583 YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGL 642
+ + ++ R + + +I +
Sbjct: 62 MDTESTVCQYSIEYR-------------LSPEITNPRNLYDAVSNITRLVKEKGLTNINM 108
Query: 643 YGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSV 702
G S G LA D + G+ S + EY
Sbjct: 109 VGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEY 168
Query: 703 MHHVHKM--------------------------KGKLLLVHGMIDENVHFRHTARLINAL 736
+ LVH DE + R T LI+ L
Sbjct: 169 DCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCL 228
Query: 737 VAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772
+ +++ + H + +Y ++ ++I
Sbjct: 229 QDYQLSFKLYLDDLGLH------NDVYKNGKVAKYI 258
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 28/229 (12%), Positives = 59/229 (25%), Gaps = 34/229 (14%)
Query: 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--AQYL 584
+ IQ+ DG + P ++ P + + + + MR +L
Sbjct: 6 ISIQSYDGHTFGALVGSPAKAPA--------------PVIVIAQEIFGVNAFMRETVSWL 51
Query: 585 RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYG 644
+G D G + + + Q E + A + +
Sbjct: 52 VDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQP 111
Query: 645 WSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMH 704
+S G V K + G ++
Sbjct: 112 YSNG-----------------KVGLVGYCLGGALAFLVAAKGYVDRAVGYYGVGLEKQLN 154
Query: 705 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
V ++K L G ++ + +LI A ++ + + H
Sbjct: 155 KVPEVKHPALFHMGG-QDHFVPAPSRQLITEGFGANPLLQVHWYEEAGH 202
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Score = 46.4 bits (108), Expect = 8e-06
Identities = 36/275 (13%), Positives = 73/275 (26%), Gaps = 42/275 (15%)
Query: 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN 596
+Y P ++ P + ++G + ++ + +Y KG + +D
Sbjct: 46 MYVRYQIPQRAKRYP-----ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQ 100
Query: 597 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG------Y 650
G R A G+ A + A Y ++
Sbjct: 101 SGRGRSATDISAINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQA 160
Query: 651 LSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE------------ 698
+ + PD + P + + + L Y
Sbjct: 161 QAELWQQMVPDWLGSMPTPNPTVANLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGIT 220
Query: 699 ---------YSSVMHHVHKMKGKLLLVHGMIDENV-----HFRHTARLINALVAARKPYE 744
+L+V G E + I+AL AA +
Sbjct: 221 AIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQ 280
Query: 745 ILIFPDE-----RHMPRRHRDRIYMEERIWEFIER 774
++ P HM + R+ + + + I ++I R
Sbjct: 281 LMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGR 315
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.0 bits (100), Expect = 8e-05
Identities = 27/248 (10%), Positives = 59/248 (23%), Gaps = 33/248 (13%)
Query: 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL 594
V ++ + + ++ + + G + W + G+ V
Sbjct: 10 QVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQD-DYNGWDINTPA-FEEYYQSGLSVIMP 67
Query: 595 DNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE---WLIKQGLAKVGHIGLYGWSYGGYL 651
++ ++ S + + E WL G S G
Sbjct: 68 VGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGS 127
Query: 652 SAITLARFPDVFQCAVSGAPVTS-----WDGYDTFYTEKYMGLPSEDPVG------YEYS 700
+ I A +P F A S + + W G + G ++ +
Sbjct: 128 ALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRN 187
Query: 701 SVMHHVHKMKGKLL-----------------LVHGMIDENVHFRHTARLINALVAARKPY 743
M + ++ + E + R + A
Sbjct: 188 DPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRN 247
Query: 744 EILIFPDE 751
+ FP
Sbjct: 248 GVFNFPPN 255
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 17/166 (10%), Positives = 37/166 (22%), Gaps = 6/166 (3%)
Query: 550 GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 609
G + L ++G + + A G
Sbjct: 19 GKESRECLFLLHGSGVD---ETTLVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPTR 75
Query: 610 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG 669
+ + K+ + H G+S G L + + P + + A
Sbjct: 76 FEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALL 135
Query: 670 APVTSW---DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 712
P+ D + + D + + + G
Sbjct: 136 RPMPVLDHVPATDLAGIRTLIIAGAADETYGPFVPALVTLLSRHGA 181
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.7 bits (94), Expect = 4e-04
Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 16/156 (10%)
Query: 572 SWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631
+W+ + +V G +E + + +WL
Sbjct: 44 NWVTAGNAMNTLAGKGISVV--APAGGAYSMYTNWEQDGSKQWDTFLSAE---LPDWLAA 98
Query: 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV-----TSWDGYDTFYTEKY 686
G G + GGY + A PD F A S + T+ +G +++
Sbjct: 99 NRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQF 158
Query: 687 MGLPSEDPVG------YEYSSVMHHVHKMKGKLLLV 716
G+ + G +++ H + V
Sbjct: 159 GGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRV 194
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 8e-04
Identities = 26/196 (13%), Positives = 49/196 (25%), Gaps = 23/196 (11%)
Query: 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-------D 189
+II V D ++ DL K+ S+ + + DG IA
Sbjct: 11 HGDRIIFVCCDD-LWEHDLKSGSTR-KIVSNL-GVINNARFFPDGRKIAIRVMRGSSLNT 67
Query: 190 CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249
+L+ N E +++T+ + +T + D I T
Sbjct: 68 ADLYFYNGENGEIKRITYFSGKST-----------GRRMFTDVAGFDPDGNLIISTDAMQ 116
Query: 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 309
+ G + P R + W + G +
Sbjct: 117 PFSSMTCLYRVEND--GINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGK 174
Query: 310 NYDEEYLARVNWMHGN 325
+ E +
Sbjct: 175 IWIEVNSGAFKKIVDM 190
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 776 | |||
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 100.0 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 100.0 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.98 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.97 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.91 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.9 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.89 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.89 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.89 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.87 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.85 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.85 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.85 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.85 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.84 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.84 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.84 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.83 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.82 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.82 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.82 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.82 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.82 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.81 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.81 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.81 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.8 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.8 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.79 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.79 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.79 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.79 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.79 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.79 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.79 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.79 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.79 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.79 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.78 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.78 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.78 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.78 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.78 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.78 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.77 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.77 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.76 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.76 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.76 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.76 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.75 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.75 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.75 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.74 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.74 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.74 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.74 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.74 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.73 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.73 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.73 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.72 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.71 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.69 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.69 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.68 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.68 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.67 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.66 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.65 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.64 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.64 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.64 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.62 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.62 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.61 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.59 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.57 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.57 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.57 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.54 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.54 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.54 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.53 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.51 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.51 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.51 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.51 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.5 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.47 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.44 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.44 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.44 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.43 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.43 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.42 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.42 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.41 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.41 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.4 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.39 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.39 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.37 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.35 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.34 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 99.33 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.33 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.24 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.21 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.19 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.18 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 99.17 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.16 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 99.1 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.09 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 99.08 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 99.03 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.02 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 99.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.98 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.96 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.89 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.88 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.88 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.73 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.69 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.66 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.66 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.65 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.65 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.63 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.63 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.62 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.59 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.59 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.58 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.56 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.49 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.48 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.48 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.47 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.47 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.45 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.44 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.43 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.42 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.42 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.41 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.39 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.38 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.38 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.37 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.29 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.25 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.23 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.18 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 98.16 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.09 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 98.01 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.96 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.88 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.84 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.74 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.74 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.71 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.68 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.66 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.57 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.35 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.06 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 96.85 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.81 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 96.67 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 96.44 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.17 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.02 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.77 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.47 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.9 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.64 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.4 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 94.31 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.24 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.02 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 93.94 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.89 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 93.63 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 93.26 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.07 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 92.96 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 92.47 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 89.92 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.1 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 88.12 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 84.66 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 82.64 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 81.67 |
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-43 Score=383.29 Aligned_cols=438 Identities=18% Similarity=0.262 Sum_probs=348.5
Q ss_pred ccccChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHH
Q 004067 38 CVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRR 117 (776)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 117 (776)
++.||+|+++.. .+.... .++.|++|+++++ . ..+ .+|+++|+.+++.+.+.+....
T Consensus 2 ~~~~tle~~~~~-~~~~~~-~~~~W~~~~~~~~-~-~~~----g~i~~~~~~~~~~~~l~~~~~~--------------- 58 (465)
T d1xfda1 2 KKKVTVEDLFSE-DFKIHD-PEAKWISDTEFIY-R-EQK----GTVRLWNVETNTSTVLIEGKKI--------------- 58 (465)
T ss_dssp CCCCCHHHHTCT-TTCCCC-CCCCBSSSSCBCC-C-CSS----SCEEEBCGGGCCCEEEECTTTT---------------
T ss_pred CCceeHHHHhCC-ccccCC-CCCEEeCCCcEEE-E-eCC----CcEEEEECCCCCEEEEEcCccc---------------
Confidence 567999999974 333333 3689999998654 2 222 3699999999998887764321
Q ss_pred HHHHHhcCCeeeEEEeecCCCceEEEEeC----------CCcEEEEeCCCCccceecCCCC--CCCccCceeCCCCCEEE
Q 004067 118 ERLRERGLGVTRYEWVKTSSKKKIIMVPL----------PDGIYFQDLSCSKPELKLSSSS--CSPVIDPHLSSDGTMIA 185 (776)
Q Consensus 118 ~~~~~~~~~~~~~~~sp~~~dg~~l~~~~----------~~~l~~~d~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~la 185 (776)
...++..+.||| ||++|+|.. .+.+|++|+.++..+ .|+... ...+..+.|||||++||
T Consensus 59 -----~~~~~~~~~~Sp---D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-~l~~~~~~~~~l~~~~wSPDG~~ia 129 (465)
T d1xfda1 59 -----ESLRAIRYEISP---DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLI 129 (465)
T ss_dssp -----TTTTCSEEEECT---TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred -----cccccceeEECC---CCCeEEEEEcccceeEeeccccEEEEEccCCcee-eccCccCCccccceeeeccCCceEE
Confidence 012567889999 999999863 357999999999988 775433 22356799999999999
Q ss_pred EEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCC-cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCC
Q 004067 186 FVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDR-KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSS 264 (776)
Q Consensus 186 ~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (776)
|+++++||+++..++...++|.++....+++|.++|++++|+.+ ..+++|||||++|||.+.+++.+..+.++.++...
T Consensus 130 fv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~ 209 (465)
T d1xfda1 130 FIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (465)
T ss_dssp EEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccc
Confidence 99999999999999999999998877789999999999999855 56899999999999999999999999887765432
Q ss_pred CCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEE
Q 004067 265 VGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF 344 (776)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 344 (776)
.+....++||.+|+.++..+|+++|++++.......+... ....+.++..+.|+||++.++.+.+|.++...|+++
T Consensus 210 --~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~--~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~ 285 (465)
T d1xfda1 210 --YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD--PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC 285 (465)
T ss_dssp --SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC--GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred --cceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCc--CccccceeeeeEEcCCCeEEEEEEccccccceEEEE
Confidence 3567889999999999999999999998876655432111 123456788999999999999999999999999999
Q ss_pred ECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEE--EeccCCceEEEEEe-------CCCceeeccccCCeEE
Q 004067 345 DIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIW--ASEKTGFRHLYLHD-------INGTCLGPITEGDWMV 415 (776)
Q Consensus 345 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~g~~~l~~~~-------~~g~~~~~lt~~~~~~ 415 (776)
|+.+|+.+.+..+...+|++... ....++.+++.++| .++++|+.++|.+. ..++..++||.++|.|
T Consensus 286 d~~tg~~~~~~~e~~~~wv~~~~----~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V 361 (465)
T d1xfda1 286 DATTGVCTKKHEDESEAWLHRQN----EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (465)
T ss_dssp ETTTCCEEEEEEEECSSCCCCCC----CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred cCCCCcEEEEEEEcCCceEeccC----CceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceE
Confidence 99999999998888888875321 01112334555544 57788888888875 3566679999999999
Q ss_pred EEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec----CCCCeEEEEEcCCcCEEEEEeeCCCCCCE
Q 004067 416 EQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT----NGKGKHVAVLDHNMRNFVDFHDSLDSPPR 491 (776)
Q Consensus 416 ~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 491 (776)
..++.|+.+++.|||+++.++|.+.|||++++ +|+ ...++|| ..++.++++|||||++++..+++++.|+
T Consensus 362 ~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l--~g~---~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~- 435 (465)
T d1xfda1 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANT--VGN---FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPM- 435 (465)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECS--STT---CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCC-
T ss_pred EEEEEEcCCCCEEEEEEeCCCCCceEEEEEEC--CCC---CcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCe-
Confidence 99989999999999999998888999999999 454 2345555 3456789999999999999999988665
Q ss_pred EEEEEcCCCceeEeeccCCCchhhhhccCC
Q 004067 492 ILLCSLQDGSLVLPLYEQPLTVPRIKRLQL 521 (776)
Q Consensus 492 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 521 (776)
+.+++..+++.++.|+.|.++.+.+++.+|
T Consensus 436 ~~~~~~~~~~~~~~Le~N~~l~~~l~~~~~ 465 (465)
T d1xfda1 436 VTVHNTTDKKKMFDLETNEHVKKAINDRQM 465 (465)
T ss_dssp EEEEETTTCCEEEEEECCHHHHHHHHTSCC
T ss_pred EEEEECCCCCEEEEEcCCHHHHHHHHhccC
Confidence 777888899999999998888888877654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.5e-38 Score=348.03 Aligned_cols=438 Identities=17% Similarity=0.234 Sum_probs=336.0
Q ss_pred ccccChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHH
Q 004067 38 CVLFSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRR 117 (776)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 117 (776)
++.+|+++++.... .....+++|++||++|+. . + ..|+++|+.+++.+++++... +
T Consensus 2 ~~~~t~~~~~~~~~--~~~~~~~~W~~d~~~~~~--~-~----~~~~~~~~~t~~~~~~~~~~~-------~-------- 57 (470)
T d2bgra1 2 RKTYTLTDYLKNTY--RLKLYSLRWISDHEYLYK--Q-E----NNILVFNAEYGNSSVFLENST-------F-------- 57 (470)
T ss_dssp CEECCHHHHHHTCS--CCCCCCCEECSSSEEEEE--S-S----SCEEEEETTTCCEEEEECTTT-------T--------
T ss_pred CCcEEhHHhhCCce--eccccCCEeCCCCEEEEE--c-C----CcEEEEECCCCCEEEEEchhh-------h--------
Confidence 45689999987542 244578999999987652 2 2 359999999999888775322 1
Q ss_pred HHHHHhcCCeeeEEEeecCCCceEEEEeC----------CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEE
Q 004067 118 ERLRERGLGVTRYEWVKTSSKKKIIMVPL----------PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFV 187 (776)
Q Consensus 118 ~~~~~~~~~~~~~~~sp~~~dg~~l~~~~----------~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~ 187 (776)
.....++.++.||| ||++|+|.. .+++|+||+++++.. .++..+.. +..+.|||||++|||+
T Consensus 58 ---~~~~~~i~~~~~Sp---Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~~~~~-~~~~~~SPDG~~ia~~ 129 (470)
T d2bgra1 58 ---DEFGHSINDYSISP---DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN-TQWVTWSPVGHKLAYV 129 (470)
T ss_dssp ---TTSSSCCCEEEECT---TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT-EEEEEECSSTTCEEEE
T ss_pred ---hhccCccceeEECC---CCCEEEEEECCcceeeeccCceEEEEECCCCccc-ccccCCcc-ccccccccCcceeeEe
Confidence 01124678999999 999999973 357999999999988 88877654 8899999999999999
Q ss_pred ECCcEEEEecCCCceeEEeeCCCCCceecCCcccceeccc-CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCC
Q 004067 188 RDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVG 266 (776)
Q Consensus 188 ~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (776)
+++++|++++.+|+..+++..+.......+.++|+++++. +...+++|||||++|+|.+.+++.+..+.+.........
T Consensus 130 ~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~ 209 (470)
T d2bgra1 130 WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQ 209 (470)
T ss_dssp ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCS
T ss_pred ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCC
Confidence 9999999999999999998887777888999999987754 667889999999999999999998888888877765545
Q ss_pred CCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccC--CC-CCCCCcceEEEEEeccCCeEEEEEEeecCceE--EE
Q 004067 267 SEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCG--GT-DQNYDEEYLARVNWMHGNILTAQVLNRSQTKL--KV 341 (776)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~--~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~--~l 341 (776)
......++|+..|..+....++++++.+++......... .+ .......++..+.|+++++.+++..++.++.. .+
T Consensus 210 ~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~ 289 (470)
T d2bgra1 210 YPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDI 289 (470)
T ss_dssp SCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEE
T ss_pred CCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEE
Confidence 566777889999999999999999999887543321100 00 11234567889999999998888888776644 56
Q ss_pred EEEECCCCceEEEE-----EeccCceeecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCCceeeccccCCeEE
Q 004067 342 LKFDIKTGQRKVIL-----VEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMV 415 (776)
Q Consensus 342 ~~~d~~~g~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~ 415 (776)
+.+|..+|....+. ......|..... +....+.+++++ +++.++++|+.+||+++.+++..++||.+++.+
T Consensus 290 ~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v 366 (470)
T d2bgra1 290 CDYDESSGRWNCLVARQHIEMSTTGWVGRFR---PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEV 366 (470)
T ss_dssp EEEETTTTEEEECGGGCEEEECSSSCSSSSS---CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCE
T ss_pred EEecCCCCcEEEEEEEeeeeeeccceeeccc---CCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeE
Confidence 67777788876652 223335543311 111112344555 577889999999999999999999999999988
Q ss_pred EEEEeecCCCcEEEEEEcc--CCCceeeEEEEEeCCCCCCccccceeecC-----CCCeEEEEEcCCcCEEEEEeeCCCC
Q 004067 416 EQIVGVNEASGQVYFTGTL--DGPLESHLYCAKLYPDWNHTLEAPVKLTN-----GKGKHVAVLDHNMRNFVDFHDSLDS 488 (776)
Q Consensus 416 ~~~~~~s~dg~~i~~~~~~--~~~~~~~l~~~~~~~~g~~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~ 488 (776)
..+ ++.|++.|||.++. ..|.+.|||++++ +|. ...++||+ .+++++++|||||++++..+++++.
T Consensus 367 ~~~--~~~d~~~iyf~a~~~~~~p~~~~ly~v~~--~g~---~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~ 439 (470)
T d2bgra1 367 IGI--EALTSDYLYYISNEYKGMPGGRNLYKIQL--SDY---TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGL 439 (470)
T ss_dssp EEE--EEECSSEEEEEESCGGGCTTCBEEEEEET--TCT---TCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSS
T ss_pred EEE--EEECCCEEEEEEecCCCCcceEEEEEEEC--CCC---CceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCC
Confidence 876 45567889999875 3456789999999 443 25677764 2357899999999999999999998
Q ss_pred CCEEEEEEcCCCceeEeeccCCCchhhhhc
Q 004067 489 PPRILLCSLQDGSLVLPLYEQPLTVPRIKR 518 (776)
Q Consensus 489 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 518 (776)
|+ +.+++..+|+.++.|+.|..+...++.
T Consensus 440 P~-~~l~~~~~g~~v~~le~n~~l~~~l~~ 468 (470)
T d2bgra1 440 PL-YTLHSSVNDKGLRVLEDNSALDKMLQN 468 (470)
T ss_dssp CE-EEEEETTTTEEEEEEECCHHHHHHHTT
T ss_pred Ce-EEEEECCCCCEEEEEeccHHHHHHHHh
Confidence 76 567888899999999877666665554
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=3.2e-32 Score=271.29 Aligned_cols=245 Identities=28% Similarity=0.499 Sum_probs=202.4
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
+++. ||..|+++++.|++. ...+++|+||++|||++.....+.|...+ ....|+++||+|+++|+||++++|..+.
T Consensus 7 ~i~~-dg~~l~~~l~~P~~~-~~~~k~Pviv~~HGGp~~~~~~~~~~~~~--~~~~la~~G~~vv~~d~rGs~~~g~~~~ 82 (258)
T d1xfda2 7 DIEI-DDYNLPMQILKPATF-TDTTHYPLLLVVDGTPGSQSVAEKFEVSW--ETVMVSSHGAVVVKCDGRGSGFQGTKLL 82 (258)
T ss_dssp CEEE-TTEEECCBEEBCSSC-CSSSCEEEEEECCCCTTCCCCCCCCCCSH--HHHHHHTTCCEEECCCCTTCSSSHHHHH
T ss_pred EEee-CCeEEEEEEEECCCc-CCCCceeEEEEEcCCccccCcCCCcCcch--HHHHHhcCCcEEEEeccccccccchhHh
Confidence 3443 999999999999886 33478999999999877666556664432 3567899999999999999999998888
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCCCCccccccccc
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDGYDTFYT 683 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~~~~~~~~~~~~ 683 (776)
......++..+..|+.++++++.+++.+|.+||+++|+|+||++++.++...++ .+++.+...++..+........
T Consensus 83 ~~~~~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
T d1xfda2 83 HEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFS 162 (258)
T ss_dssp HTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHHH
T ss_pred hhhhccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeeccccccc
Confidence 777777888889999999999999999999999999999999999998876543 5778888888776654433333
Q ss_pred ccccCCCCCCccchhcCChhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHH
Q 004067 684 EKYMGLPSEDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 762 (776)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~ 762 (776)
..+.+.+......+...++...+.++ ++|+|++||+.|..+|+.++.+++++|++.+++++++++|+++|.+.......
T Consensus 163 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~ 242 (258)
T d1xfda2 163 ERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQ 242 (258)
T ss_dssp HHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHH
T ss_pred cccccccccchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCcCHH
Confidence 33345555555667777888877776 58999999999999999999999999999999999999999999987767778
Q ss_pred HHHHHHHHHHHHhC
Q 004067 763 YMEERIWEFIERTL 776 (776)
Q Consensus 763 ~~~~~~~~fl~~~l 776 (776)
.+++.+.+||+++|
T Consensus 243 ~~~~~~~~f~~~~~ 256 (258)
T d1xfda2 243 HLYRSIINFFVECF 256 (258)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhh
Confidence 88999999999875
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.97 E-value=2.8e-31 Score=264.62 Aligned_cols=248 Identities=24% Similarity=0.362 Sum_probs=208.1
Q ss_pred cCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCC
Q 004067 519 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 598 (776)
Q Consensus 519 ~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg 598 (776)
+.+...+.++|++.||..|+++++.|++.. ++.|+||++|||++.+. .. .+...+..|+++||+|+++|+|+
T Consensus 7 ~~~~~~~~v~~~s~dG~~i~~~l~~p~~~~---~~~Pviv~~HGG~~~~~-~~----~~~~~~~~la~~G~~v~~~d~r~ 78 (260)
T d2hu7a2 7 RSIAGSRLVWVESFDGSRVPTYVLESGRAP---TPGPTVVLVHGGPFAED-SD----SWDTFAASLAAAGFHVVMPNYRG 78 (260)
T ss_dssp HTEEEEEEEEEECTTSCEEEEEEEEETTSC---SSEEEEEEECSSSSCCC-CS----SCCHHHHHHHHHTCEEEEECCTT
T ss_pred cccCceEEEEEECCCCCEEEEEEEeCCCCC---CCceEEEEECCCCccCC-Cc----cccHHHHHHHhhccccccceeee
Confidence 345678899999999999999999997743 67899999999876543 12 33456788999999999999999
Q ss_pred CCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc
Q 004067 599 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678 (776)
Q Consensus 599 ~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 678 (776)
+++++..+.......++..+++|+.++++++.++. +..+++|+|+|+||++++.++..+|+.+++++..+|..++..+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~ 156 (260)
T d2hu7a2 79 STGYGEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEM 156 (260)
T ss_dssp CSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHH
T ss_pred ccccccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhh
Confidence 99999888777766666777899999999999876 6679999999999999999999999999999999999886543
Q ss_pred ccc----ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 679 DTF----YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 679 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
... +............+.+...++...+.++++|+|++||++|.+||+.++.+++++|++.++++++++||+++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~g~~H~ 236 (260)
T d2hu7a2 157 YELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHA 236 (260)
T ss_dssp HHTCCHHHHHHHHHHHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEETTCCSS
T ss_pred hcccccccccccccccccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEECcCCCC
Confidence 211 1111111223345667788899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHhC
Q 004067 755 PRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 755 ~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+...++..+++..+.+||.+||
T Consensus 237 ~~~~e~~~~~~~~~~~fl~~hl 258 (260)
T d2hu7a2 237 INTMEDAVKILLPAVFFLATQR 258 (260)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHhHHHHHHHHHHHHHHHh
Confidence 9877888899999999999985
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=1.1e-30 Score=260.28 Aligned_cols=251 Identities=29% Similarity=0.549 Sum_probs=210.6
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..|.+.|...+|.++.++++.|++.+ ..+++|+||++|||++.......|.. ......++++||+|+.+|+||++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~lP~~~~-~~kk~P~iv~~HGGp~~~~~~~~~~~--~~~~~~~a~~g~~V~~~d~rg~~~~ 78 (258)
T d2bgra2 2 PSKKLDFIILNETKFWYQMILPPHFD-KSKKYPLLLDVYAGPCSQKADTVFRL--NWATYLASTENIIVASFDGRGSGYQ 78 (258)
T ss_dssp CEEEEEEEEETTEEEEEEEEECTTCC-TTSCEEEEEECCCCTTCCCCCCCCCC--SHHHHHHHTTCCEEEEECCTTCSSS
T ss_pred CceeEEEEEeCCcEEEEEEEECCCcC-CCCCeeEEEEEcCCCCcccCCCccCc--CHHHHHHhcCCcEEEeecccccCCc
Confidence 46788999889999999999999863 34789999999998666543334432 2235567899999999999999999
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (776)
+..+.......++..+..|..++++++.++..+|.++|+++|+|+||.+++.++..+|+++.+++..++......+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (258)
T d2bgra2 79 GDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVY 158 (258)
T ss_dssp CHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHH
T ss_pred chHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecccccccccccc
Confidence 88888888888888888999999999999999999999999999999999999999999999999998887765554433
Q ss_pred ccccc--CCCCCCccchhcCChhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCC
Q 004067 683 TEKYM--GLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 759 (776)
Q Consensus 683 ~~~~~--~~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 759 (776)
..... .........+...+++..+.+++ +|+|++||++|.+||+.++.+++++|+++++++++++||+++|.+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~ 238 (258)
T d2bgra2 159 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASST 238 (258)
T ss_dssp HHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCTTCCSHH
T ss_pred cchhcccccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCc
Confidence 33322 23334455666778888888876 7999999999999999999999999999999999999999999987777
Q ss_pred cHHHHHHHHHHHHHHhC
Q 004067 760 DRIYMEERIWEFIERTL 776 (776)
Q Consensus 760 ~~~~~~~~~~~fl~~~l 776 (776)
....++..+.+||+++|
T Consensus 239 ~~~~~~~~i~~fl~~~l 255 (258)
T d2bgra2 239 AHQHIYTHMSHFIKQCF 255 (258)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 78899999999999986
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=5.2e-24 Score=218.83 Aligned_cols=234 Identities=18% Similarity=0.139 Sum_probs=170.5
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+.+.++|++.||.+|+++++.|++. ++.|+||++||+++... .+...+..|+++||+|+++|+||+|.+
T Consensus 55 ~~~~v~~~~~dg~~i~~~l~~P~~~----~~~P~vv~~HG~~~~~~-------~~~~~~~~la~~Gy~vi~~D~rG~G~s 123 (318)
T d1l7aa_ 55 KVYRLTYKSFGNARITGWYAVPDKE----GPHPAIVKYHGYNASYD-------GEIHEMVNWALHGYATFGMLVRGQQRS 123 (318)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEESSC----SCEEEEEEECCTTCCSG-------GGHHHHHHHHHTTCEEEEECCTTTSSS
T ss_pred EEEEEEEECCCCcEEEEEEEecCCC----CCceEEEEecCCCCCcc-------chHHHHHHHHHCCCEEEEEeeCCCCCC
Confidence 4678899999999999999999874 68899999999876543 234457789999999999999999988
Q ss_pred chhhhhhhhhccC--------------CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEE
Q 004067 603 GLKFEASIKHNCG--------------RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 668 (776)
Q Consensus 603 ~~~~~~~~~~~~~--------------~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~ 668 (776)
...........+. ...+.|...+++++..+..++..+++++|+|+||.+++..+...++. +++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~~-~~~~~ 202 (318)
T d1l7aa_ 124 EDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIP-KAAVA 202 (318)
T ss_dssp CCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSCC-SEEEE
T ss_pred CCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCccc-ceEEE
Confidence 6543221111110 01256888899999999989999999999999999999999988775 44555
Q ss_pred cCCC-CCcccccccccc-------cc---cCCCCCCc---cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHH
Q 004067 669 GAPV-TSWDGYDTFYTE-------KY---MGLPSEDP---VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLIN 734 (776)
Q Consensus 669 ~~~~-~~~~~~~~~~~~-------~~---~~~~~~~~---~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 734 (776)
..|. .++......... .+ ........ ......++...++++++|+|++||++|.+||++++..+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~ 282 (318)
T d1l7aa_ 203 DYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYN 282 (318)
T ss_dssp ESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHH
T ss_pred eccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCCEEEEEECCCCCcCHHHHHHHHH
Confidence 4444 332211000000 00 00000000 1123345667788999999999999999999999999888
Q ss_pred HHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 735 ALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 735 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++ +.+.++++||+++|.+ ..++.+.+++||+++|
T Consensus 283 ~l---~~~~~l~~~~~~gH~~-----~~~~~~~~~~fl~~~L 316 (318)
T d1l7aa_ 283 HL---ETKKELKVYRYFGHEY-----IPAFQTEKLAFFKQIL 316 (318)
T ss_dssp HC---CSSEEEEEETTCCSSC-----CHHHHHHHHHHHHHHH
T ss_pred Hc---CCCcEEEEECCCCCCC-----cHHHHHHHHHHHHHhC
Confidence 76 5678999999999975 3467788999999986
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.91 E-value=5e-24 Score=221.03 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=168.5
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...|.+.++. +|.+|+++++.|+.. ++.|+||++||..+... .+..+++.|+++||+|+++|+||+|.
T Consensus 104 ~~~e~v~ip~-dg~~l~g~l~~P~~~----~~~P~Vi~~hG~~~~~e-------~~~~~~~~l~~~G~~vl~~D~~G~G~ 171 (360)
T d2jbwa1 104 PPAERHELVV-DGIPMPVYVRIPEGP----GPHPAVIMLGGLESTKE-------ESFQMENLVLDRGMATATFDGPGQGE 171 (360)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSSS----CCEEEEEEECCSSCCTT-------TTHHHHHHHHHTTCEEEEECCTTSGG
T ss_pred CCeEEeecCc-CCcccceEEEecCCC----CCceEEEEeCCCCccHH-------HHHHHHHHHHhcCCEEEEEccccccc
Confidence 4678899987 788999999999764 68899999999755432 23345788999999999999999987
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
+...... ......+...+++++..+..+|.++|+|+||||||++++.+|+.+|+ ++++|+.+|+.++..+...
T Consensus 172 s~~~~~~------~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pr-i~a~V~~~~~~~~~~~~~~ 244 (360)
T d2jbwa1 172 MFEYKRI------AGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYWDLE 244 (360)
T ss_dssp GTTTCCS------CSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCSTTGGGS
T ss_pred cCccccc------cccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCCC-cceEEEEcccccHHHHhhh
Confidence 7532211 11113356677889999988999999999999999999999998875 7999999888775432211
Q ss_pred c---ccc--cc-CCCCC---CccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCC
Q 004067 682 Y---TEK--YM-GLPSE---DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 752 (776)
Q Consensus 682 ~---~~~--~~-~~~~~---~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 752 (776)
. ... +. +.... ........+....+.++++|+|++||++|. +|+..+..+++.+.. .+.+++++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~--~~~~l~~~~~g~ 321 (360)
T d2jbwa1 245 TPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPA--EHLNLVVEKDGD 321 (360)
T ss_dssp CHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCG--GGEEEEEETTCC
T ss_pred hhhhhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cCHHHHHHHHHhcCC--CCeEEEEECCCC
Confidence 0 000 00 11100 001122334455678999999999999998 689999999988732 457888999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 753 HMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 753 H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
|... .........+.+||.++|
T Consensus 322 H~~~--~~~~~~~~~i~dWl~~~L 343 (360)
T d2jbwa1 322 HCCH--NLGIRPRLEMADWLYDVL 343 (360)
T ss_dssp GGGG--GGTTHHHHHHHHHHHHHH
T ss_pred cCCC--cChHHHHHHHHHHHHHHh
Confidence 9652 345567788999998864
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=1.6e-22 Score=211.01 Aligned_cols=332 Identities=13% Similarity=0.023 Sum_probs=214.7
Q ss_pred CceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
....||| ||++|||.+. .+||+||++++..+++.. ...+..+.|||
T Consensus 6 ~~~~fSP~dG~~~a~~~~------g~v~v~d~~~~~~~~~~~-------------------------~~~v~~~~~sp-- 52 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR------GQAFIQDVSGTYVLKVPE-------------------------PLRIRYVRRGG-- 52 (360)
T ss_dssp GEEEEEECGGGCEEEEET------TEEEEECTTSSBEEECSC-------------------------CSCEEEEEECS--
T ss_pred hcccccCCCCCEEEEEEC------CeEEEEECCCCcEEEccC-------------------------CCCEEEEEECC--
Confidence 3567999 9999999875 359999999999888752 24688999999
Q ss_pred CCceEEEEeCCC---cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCC
Q 004067 137 SKKKIIMVPLPD---GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 137 ~dg~~l~~~~~~---~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
||++|++.... .|++||+++++.+ +++.... .+..+.|||||++|++.... .++++++++++..++......
T Consensus 53 -Dg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 128 (360)
T d1k32a3 53 -DTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLG-NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA- 128 (360)
T ss_dssp -SSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCC-SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-
T ss_pred -CCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCc-eEEeeeecccccccceeccccccccccccccceeeeeecccc-
Confidence 99999987332 5899999999988 7776655 47889999999999999875 599999999988777654321
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
....++|||||+.|+|...+..... .......+++|+.
T Consensus 129 ----------------~~~~~~~spdg~~la~~~~~~~~~~--------------------------~~~~~~~~~v~d~ 166 (360)
T d1k32a3 129 ----------------MITDFTISDNSRFIAYGFPLKHGET--------------------------DGYVMQAIHVYDM 166 (360)
T ss_dssp ----------------CCCCEEECTTSCEEEEEEEECSSTT--------------------------CSCCEEEEEEEET
T ss_pred ----------------cccchhhccceeeeeeeccccccce--------------------------eeccccceeeecc
Confidence 1346889999999999775433110 0112366899999
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce--------EEEEEeccCceee
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR--------KVILVEELDSWVN 364 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~--------~~l~~~~~~~~~~ 364 (776)
.+++...+ ..+......+.|||||+.|++.+.+. .+..||...... ..+.-+... .
T Consensus 167 ~~~~~~~~---------~~~~~~~~~~~~spdg~~l~~~s~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~ 230 (360)
T d1k32a3 167 EGRKIFAA---------TTENSHDYAPAFDADSKNLYYLSYRS----LDPSPDRVVLNFSFEVVSKPFVIPLIPGS---P 230 (360)
T ss_dssp TTTEEEEC---------SCSSSBEEEEEECTTSCEEEEEESCC----CCCEECSSSSCEECCSCBEEEEEESSTTC---C
T ss_pred ccCceeee---------cccccccccccccCCCCEEEEEeCCC----ceEcccccccceeeccccceEEEecccCc---c
Confidence 99987776 44556677899999999988877543 244555433221 111111110 0
Q ss_pred cccccccCCCCccccCCeEEEEe-c-cCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWAS-E-KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s-~-~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
....+++. +..+.... . ......++.++..++..+.+......+..+. +...+....+...... ...|
T Consensus 231 ~~~~~s~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~i 300 (360)
T d1k32a3 231 NPTKLVPR-------SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS-VPVHGEFAAYYQGAPE--KGVL 300 (360)
T ss_dssp CGGGCCCG-------GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEE-CCCCCSHHHHHHCCCC--CEEE
T ss_pred ccceECCC-------cCcccccceeecccccceeecccCcCceeEeeecCCCceEEE-EEecCCCeeEEEecCC--CCEE
Confidence 00111111 11111000 0 1122357777777776666665443333222 3333332222222222 2456
Q ss_pred EEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 443 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
+..++. +. +...+.. .+..++|||||++|++.... +.|++++...++..+.+
T Consensus 301 ~~~d~~--~~----~~~~~~~--~v~~~~~SpDG~~l~~~~~D----g~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 301 LKYDVK--TR----KVTEVKN--NLTDLRLSADRKTVMVRKDD----GKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EEEETT--TC----CEEEEEE--EEEEEEECTTSCEEEEEETT----SCEEEEESSCTTSCEEC
T ss_pred EEEECC--CC----eEEEecC--CcCEEEECCCCCEEEEEECC----CeEEEEECCCCCcceEE
Confidence 666763 22 4445543 36788999999999887654 36999999888766655
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.2e-23 Score=214.44 Aligned_cols=235 Identities=16% Similarity=0.111 Sum_probs=168.3
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+.+.++|++.||.+|+++++.|++.. ++.|+||++||+++... .| .....++++||+|+++|+||+|.+
T Consensus 54 ~~~~v~~~s~dG~~l~~~l~~P~~~~---~~~P~Vv~~hG~~~~~~---~~-----~~~~~~a~~G~~v~~~D~rG~G~s 122 (322)
T d1vlqa_ 54 EAYDVTFSGYRGQRIKGWLLVPKLEE---EKLPCVVQYIGYNGGRG---FP-----HDWLFWPSMGYICFVMDTRGQGSG 122 (322)
T ss_dssp EEEEEEEECGGGCEEEEEEEEECCSC---SSEEEEEECCCTTCCCC---CG-----GGGCHHHHTTCEEEEECCTTCCCS
T ss_pred EEEEEEEECCCCcEEEEEEEeccCCC---CCccEEEEecCCCCCcC---cH-----HHHHHHHhCCCEEEEeeccccCCC
Confidence 46789999999999999999998643 67999999999765432 11 124578999999999999999987
Q ss_pred chhhhhhhhh---------------------ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC
Q 004067 603 GLKFEASIKH---------------------NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 661 (776)
Q Consensus 603 ~~~~~~~~~~---------------------~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~ 661 (776)
+......... ......+.|+.++++++..+..+|.++++++|+|+||++++.+++..+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~~ 202 (322)
T d1vlqa_ 123 WLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKK 202 (322)
T ss_dssp SSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCSS
T ss_pred CCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCCC
Confidence 5432111000 0001135789999999999998999999999999999999999888665
Q ss_pred ceEEEEEcCCCCCc-cccccc-----cc--cccc-CCCCC---CccchhcCChhhhhccCCCcEEEEecCCCCccChHHH
Q 004067 662 VFQCAVSGAPVTSW-DGYDTF-----YT--EKYM-GLPSE---DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 729 (776)
Q Consensus 662 ~~~~~v~~~~~~~~-~~~~~~-----~~--~~~~-~~~~~---~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 729 (776)
++++++..|.... ...... +. ..+. ..+.. ....+...++...+.++++|+|++||.+|.++|+..+
T Consensus 203 -~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~~G~~D~~vp~~~~ 281 (322)
T d1vlqa_ 203 -AKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTV 281 (322)
T ss_dssp -CCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred -ccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCCEEEEEeCCCCCcCHHHH
Confidence 6777776665432 111000 00 0000 01111 1123345688888999999999999999999999988
Q ss_pred HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 730 ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 730 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
.++++++ +.+.++++||+++|... ........++||+++|
T Consensus 282 ~~~~~~~---~~~~~l~~~p~~~H~~~----~~~~~~~~~~~l~~~l 321 (322)
T d1vlqa_ 282 FAAYNYY---AGPKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLF 321 (322)
T ss_dssp HHHHHHC---CSSEEEEEETTCCTTTT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHC---CCCeEEEEECCCCCCCc----cccCHHHHHHHHHHHh
Confidence 8887765 67899999999999652 2223345678998875
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.89 E-value=1.3e-22 Score=204.01 Aligned_cols=248 Identities=18% Similarity=0.193 Sum_probs=180.1
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
+|++++++.||.+|+++++.|++.. ..+++|+||++|||++.+... .+. ......++..++.++..++++.....
T Consensus 7 ~e~v~~~s~DG~~i~~~l~~P~~~~-~~~~~P~iv~~HGG~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (280)
T d1qfma2 7 TVQIFYPSKDGTKIPMFIVHKKGIK-LDGSHPAFLYGYGGFNISITP-NYS---VSRLIFVRHMGGVLAVANIRGGGEYG 81 (280)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTCC-CSSCSCEEEECCCCTTCCCCC-CCC---HHHHHHHHHHCCEEEEECCTTSSTTH
T ss_pred EEEEEEECCCCCEEEEEEEEcCCCC-CCCCeEEEEEECCCCcccCCC-Ccc---hhhhhhhcccceeeeccccccccccc
Confidence 6889999999999999999999752 337899999999998765422 221 22345567788999999998877666
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccc
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 683 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (776)
..+..............+...++.....+...+...++++|+|.||.++..++...++++++++...++.++........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (280)
T d1qfma2 82 ETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTI 161 (280)
T ss_dssp HHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTT
T ss_pred hhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhccccc
Confidence 55544444444444566677777777777777888999999999999999999999999999999999887643321110
Q ss_pred cc------ccCCCCCCccc------hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHH-------CCCCeE
Q 004067 684 EK------YMGLPSEDPVG------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA-------ARKPYE 744 (776)
Q Consensus 684 ~~------~~~~~~~~~~~------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~-------~~~~~~ 744 (776)
.. ........... +...+++........|+|++||++|.+||+.++.+++++|++ .+++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~~ 241 (280)
T d1qfma2 162 GHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 241 (280)
T ss_dssp GGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEE
T ss_pred cccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcEE
Confidence 00 00111111111 122233333444446999999999999999999999999964 477899
Q ss_pred EEEecCCCCCCCCCC-cHHHHHHHHHHHHHHhC
Q 004067 745 ILIFPDERHMPRRHR-DRIYMEERIWEFIERTL 776 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~-~~~~~~~~~~~fl~~~l 776 (776)
++++|++||.+.... +..+.+.++++||+++|
T Consensus 242 l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L 274 (280)
T d1qfma2 242 IHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCL 274 (280)
T ss_dssp EEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999985443 34566778999999986
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.89 E-value=1.1e-22 Score=205.51 Aligned_cols=214 Identities=15% Similarity=0.138 Sum_probs=149.2
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC-CC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-AR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~-g~ 601 (776)
.+....+++.||..+++|.+.|++. .+++.|+||++||..+... .+..++++|+++||+|+++|+||| |.
T Consensus 3 ~~~~h~~~~~dg~~l~~w~~~p~~~--~~~~~~~Vvi~HG~~~~~~-------~~~~~a~~L~~~G~~Vi~~D~rGh~G~ 73 (302)
T d1thta_ 3 KTIAHVLRVNNGQELHVWETPPKEN--VPFKNNTILIASGFARRMD-------HFAGLAEYLSTNGFHVFRYDSLHHVGL 73 (302)
T ss_dssp SCEEEEEEETTTEEEEEEEECCCTT--SCCCSCEEEEECTTCGGGG-------GGHHHHHHHHTTTCCEEEECCCBCC--
T ss_pred eeeeeEEEcCCCCEEEEEEecCcCC--CCCCCCEEEEeCCCcchHH-------HHHHHHHHHHHCCCEEEEecCCCCCCC
Confidence 3567778889999999999999773 3357789999999766543 345678999999999999999998 55
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
|...+...... ....|+.++++++.++ +.++++|+||||||.+++.+|... .++++|+.+|+.+...+...
T Consensus 74 S~g~~~~~~~~----~~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~~--~v~~li~~~g~~~~~~~~~~ 144 (302)
T d1thta_ 74 SSGSIDEFTMT----TGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISDL--ELSFLITAVGVVNLRDTLEK 144 (302)
T ss_dssp ------CCCHH----HHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTTS--CCSEEEEESCCSCHHHHHHH
T ss_pred CCCcccCCCHH----HHHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhccc--ccceeEeecccccHHHHHHH
Confidence 54332221111 2367899999999876 346899999999999998888643 46888988888765321100
Q ss_pred ccc-ccc-----CCCCC------Cc--cch-----h-----cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHH
Q 004067 682 YTE-KYM-----GLPSE------DP--VGY-----E-----YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALV 737 (776)
Q Consensus 682 ~~~-~~~-----~~~~~------~~--~~~-----~-----~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 737 (776)
... .+. ..+.. .. ..+ . ...+...+.++++|+|+++|++|.+|+++.+.++++.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~~~~~~~l~~~i~ 224 (302)
T d1thta_ 145 ALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIR 224 (302)
T ss_dssp HHSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCT
T ss_pred HHhhccchhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhCC
Confidence 000 000 00000 00 000 0 012345678999999999999999999999999998773
Q ss_pred HCCCCeEEEEecCCCCCCC
Q 004067 738 AARKPYEILIFPDERHMPR 756 (776)
Q Consensus 738 ~~~~~~~~~~~~~~~H~~~ 756 (776)
..++++++++|++|.+.
T Consensus 225 --s~~~kl~~~~g~~H~l~ 241 (302)
T d1thta_ 225 --TGHCKLYSLLGSSHDLG 241 (302)
T ss_dssp --TCCEEEEEETTCCSCTT
T ss_pred --CCCceEEEecCCCcccc
Confidence 35789999999999874
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.89 E-value=1.1e-21 Score=185.12 Aligned_cols=208 Identities=22% Similarity=0.232 Sum_probs=153.9
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+.+.+++..++| ++.+.+..|... +..+.+++|++|+.+......+ ......+++.|+++||.|+.+|+||+|.|
T Consensus 7 ~~~~l~i~gp~G-~l~~~~~~p~~~--~~~~~~~~vl~Hph~~~GG~~~--~~~~~~la~~l~~~G~~vlrfd~RG~G~S 81 (218)
T d2fuka1 7 ESAALTLDGPVG-PLDVAVDLPEPD--VAVQPVTAIVCHPLSTEGGSMH--NKVVTMAARALRELGITVVRFNFRSVGTS 81 (218)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTT--SCCCSEEEEEECSCTTTTCSTT--CHHHHHHHHHHHTTTCEEEEECCTTSTTC
T ss_pred CceEEEEeCCCc-cEEEEEEcCCCC--CCCCCcEEEEECCCCCCCcCCC--ChHHHHHHHHHHHcCCeEEEeecCCCccC
Confidence 456788998888 599999998653 2235578888996433211111 11123467889999999999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (776)
...+.. .....+|+.++++++.++. +..+++++|+||||.+++.++.+.+ .+++|+.+|......+
T Consensus 82 ~g~~~~------~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~~--~~~lil~ap~~~~~~~---- 147 (218)
T d2fuka1 82 AGSFDH------GDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAALE--PQVLISIAPPAGRWDF---- 147 (218)
T ss_dssp CSCCCT------TTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHC--CSEEEEESCCBTTBCC----
T ss_pred CCccCc------CcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhcccc--cceEEEeCCcccchhh----
Confidence 654322 2235789999999999875 4579999999999999998887643 4678888776431100
Q ss_pred cccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHH
Q 004067 683 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 762 (776)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~ 762 (776)
...++.+|+|+|||+.|..+|++++.++++++ ..+.+++++|+++|.|. ....
T Consensus 148 ----------------------~~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~---~~~~~l~~i~ga~H~f~--~~~~ 200 (218)
T d2fuka1 148 ----------------------SDVQPPAQWLVIQGDADEIVDPQAVYDWLETL---EQQPTLVRMPDTSHFFH--RKLI 200 (218)
T ss_dssp ----------------------TTCCCCSSEEEEEETTCSSSCHHHHHHHHTTC---SSCCEEEEETTCCTTCT--TCHH
T ss_pred ----------------------hccccccceeeEecCCCcCcCHHHHHHHHHHc---cCCceEEEeCCCCCCCC--CCHH
Confidence 01234579999999999999999988887655 45678999999999874 3556
Q ss_pred HHHHHHHHHHHHhC
Q 004067 763 YMEERIWEFIERTL 776 (776)
Q Consensus 763 ~~~~~~~~fl~~~l 776 (776)
++.+.+.+|++++|
T Consensus 201 ~l~~~~~~~v~~~l 214 (218)
T d2fuka1 201 DLRGALQHGVRRWL 214 (218)
T ss_dssp HHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhc
Confidence 78999999999986
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=7.7e-20 Score=182.28 Aligned_cols=255 Identities=18% Similarity=0.205 Sum_probs=188.5
Q ss_pred CEEEEEeCCCCcC-cceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe
Q 004067 67 NLITYLLSPDHSL-SRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP 145 (776)
Q Consensus 67 ~~ia~~~~~~~~~-~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~ 145 (776)
.+|||++...+.. ..+||++|.+|++.++|+... ..+.++.||| ||++|||.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~------------------------~~~~sP~wSP---DGk~IAf~ 56 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP------------------------QPLMSPAWSP---DGSKLAYV 56 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES------------------------SCEEEEEECT---TSSEEEEE
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCC------------------------CceeeeEECC---CCCEEEEE
Confidence 6899999866432 238999999999999999643 3567899999 99999998
Q ss_pred C----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecC
Q 004067 146 L----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 146 ~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
. ...+|.++..++..+ .++.... ....+.|||||+.+++.... ++...................
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 128 (269)
T d2hqsa1 57 TFESGRSALVIQTLANGAVR-QVASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN------ 128 (269)
T ss_dssp ECTTSSCEEEEEETTTCCEE-EEECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC------
T ss_pred EeeccCcceeeeecccCcee-EEeeeec-ccccceecCCCCeeeEeeecCCccceeecccccccceeeeecccc------
Confidence 3 345999999999988 6666554 36789999999999999863 344444444444443332221
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
.....|+++++.+++.....+. ..|++.+++++..
T Consensus 129 ------------~~~~~~~~~~~~~~~~~~~~g~---------------------------------~~i~~~~~~~~~~ 163 (269)
T d2hqsa1 129 ------------NTEPTWFPDSQNLAFTSDQAGR---------------------------------PQVYKVNINGGAP 163 (269)
T ss_dssp ------------EEEEEECTTSSEEEEEECTTSS---------------------------------CEEEEEETTSSCC
T ss_pred ------------ccccccccccccceecccccCC---------------------------------ceEeeeecccccc
Confidence 2245699999999887753322 4678889988877
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCcc
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVT 377 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (776)
..+ .........+.|||||+.+++...+. ....|++++.+++..+.+.. .... ..+.|+|
T Consensus 164 ~~~---------~~~~~~~~~~~~spdg~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~-~~~~---~~p~~SP------ 223 (269)
T d2hqsa1 164 QRI---------TWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLSS-TFLD---ETPSLAP------ 223 (269)
T ss_dssp EEC---------CCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEEECCC-SSSC---EEEEECT------
T ss_pred eee---------ecccccccccccccccceeEEEeecC-CceeeeEeecccccceEeec-Cccc---cceEECC------
Confidence 766 34556778899999999888887665 56789999999887755433 2221 1223444
Q ss_pred ccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 378 KYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 378 ~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
|++.++|.+++.+..+||+++++|+..++|+.....+..+. |||
T Consensus 224 -DG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~-WSP 267 (269)
T d2hqsa1 224 -NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPA-WSP 267 (269)
T ss_dssp -TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEE-ECC
T ss_pred -CCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEE-eCC
Confidence 45669999988889999999999999999999877666554 887
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.85 E-value=5.7e-21 Score=188.29 Aligned_cols=189 Identities=14% Similarity=0.167 Sum_probs=144.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~ 616 (776)
..+.+|.|.+. +.+++|+||++||+.+... .+..+++.|+++||+|+++|++|.+.....
T Consensus 37 ~~~~ly~P~~~--~~g~~P~Vv~~HG~~g~~~-------~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~~----------- 96 (260)
T d1jfra_ 37 GGGTIYYPTST--ADGTFGAVVISPGFTAYQS-------SIAWLGPRLASQGFVVFTIDTNTTLDQPDS----------- 96 (260)
T ss_dssp CCEEEEEESCC--TTCCEEEEEEECCTTCCGG-------GTTTHHHHHHTTTCEEEEECCSSTTCCHHH-----------
T ss_pred cCEEEEEcCCC--CCCCccEEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEeeCCCcCCchh-----------
Confidence 45788999763 3368899999999776543 233458899999999999999987654321
Q ss_pred ccHHHHHHHHHHHHHc----CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCC
Q 004067 617 IDAEDQLTGAEWLIKQ----GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE 692 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~----~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (776)
...|+.++++++.+. ..+|.+||+++|||+||.+++.++...++ +++++..+|....
T Consensus 97 -~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~~-~~A~v~~~~~~~~----------------- 157 (260)
T d1jfra_ 97 -RGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNTD----------------- 157 (260)
T ss_dssp -HHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCSC-----------------
T ss_pred -hHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhcc-chhheeeeccccc-----------------
Confidence 146788888888875 45899999999999999999999998764 6788877765321
Q ss_pred CccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 693 DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
....++++|+|+++|++|.++|+....+.+......+.+.+++++++++|.+.... ...+.+.+++||
T Consensus 158 -----------~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~ga~H~~~~~~-~~~~~~~~~~wl 225 (260)
T d1jfra_ 158 -----------KTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTS-DTTIAKYSISWL 225 (260)
T ss_dssp -----------CCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEETTCCTTGGGSC-CHHHHHHHHHHH
T ss_pred -----------ccccccccceeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEECCCccCCCCCC-hHHHHHHHHHHH
Confidence 12345678999999999999998765555444545567889999999999874433 456778889999
Q ss_pred HHhC
Q 004067 773 ERTL 776 (776)
Q Consensus 773 ~~~l 776 (776)
+.||
T Consensus 226 ~~~L 229 (260)
T d1jfra_ 226 KRFI 229 (260)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.85 E-value=1.1e-20 Score=183.14 Aligned_cols=210 Identities=17% Similarity=0.190 Sum_probs=151.0
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.|.|+|++.||.++.+++..|.+ +++|+||++|+..+... .....++.|+++||.|+++|+.+.+..+
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~-----~~~P~vl~~h~~~G~~~-------~~~~~a~~lA~~Gy~vl~pd~~~~~~~~ 70 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK-----APAPVIVIAQEIFGVNA-------FMRETVSWLVDQGYAAVCPDLYARQAPG 70 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS-----SSEEEEEEECCTTBSCH-------HHHHHHHHHHHTTCEEEEECGGGGTSTT
T ss_pred ceEEEEEcCCCCEEEEEEECCCC-----CCceEEEEeCCCCCCCH-------HHHHHHHHHHhcCCcceeeeeccCCCcC
Confidence 56678999999999999999976 58999999997554322 1233478899999999999987654432
Q ss_pred hhh-----h--hh---hhhcc-CCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 604 LKF-----E--AS---IKHNC-GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 604 ~~~-----~--~~---~~~~~-~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
... . .. ..... ......|+.++++++.+... +.++|+++|+|+||.+++.++.. +. +.+++...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~ 147 (233)
T d1dina_ 71 TALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGV 147 (233)
T ss_dssp CBCCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCS
T ss_pred cccChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccc-cc-cceecccccc
Confidence 211 0 00 00000 11235688888999987764 55899999999999999998876 33 4455554332
Q ss_pred CCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCC
Q 004067 673 TSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 752 (776)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 752 (776)
. ..+++....++++|+|++||++|..+|.+..+.+.+.+ +.++++++++||+++
T Consensus 148 ~-------------------------~~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~-~~~~~~~~~~y~ga~ 201 (233)
T d1dina_ 148 G-------------------------LEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGF-GANPLLQVHWYEEAG 201 (233)
T ss_dssp C-------------------------GGGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHH-TTCTTEEEEEETTCC
T ss_pred c-------------------------cccchhhhhccCCcceeeecccccCCCHHHHHHHHHHH-hcCCCEEEEEECCCC
Confidence 1 01223456788999999999999999999888777766 457899999999999
Q ss_pred CCCCCC-------CcHHHHHHHHHHHHHH
Q 004067 753 HMPRRH-------RDRIYMEERIWEFIER 774 (776)
Q Consensus 753 H~~~~~-------~~~~~~~~~~~~fl~~ 774 (776)
|.|..+ ...++.+.++++||..
T Consensus 202 HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 202 HSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp TTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 987422 2235668889999854
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.2e-21 Score=183.10 Aligned_cols=198 Identities=16% Similarity=0.071 Sum_probs=140.2
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
++.. +|..+++..+.|... ...|+||++||.+++.. .|.. ...+..|+++||.|+++|+||+|.|.....
T Consensus 10 ~i~v-~G~~i~y~~~~~~~~----~~~~~vvllHG~~~~~~---~w~~--~~~~~~la~~gy~via~D~~G~G~S~~~~~ 79 (208)
T d1imja_ 10 TIQV-QGQALFFREALPGSG----QARFSVLLLHGIRFSSE---TWQN--LGTLHRLAQAGYRAVAIDLPGLGHSKEAAA 79 (208)
T ss_dssp CEEE-TTEEECEEEEECSSS----CCSCEEEECCCTTCCHH---HHHH--HTHHHHHHHTTCEEEEECCTTSGGGTTSCC
T ss_pred EEEE-CCEEEEEEEecCCCC----CCCCeEEEECCCCCChh---HHhh--hHHHHHHHHcCCeEEEeecccccCCCCCCc
Confidence 4444 889999998888653 35678899999876643 2211 113577999999999999999998754321
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccccccc
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 687 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 687 (776)
...... ....+++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|+.+|...- .
T Consensus 80 ~~~~~~--~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~---------~-- 140 (208)
T d1imja_ 80 PAPIGE--LAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTD---------K-- 140 (208)
T ss_dssp SSCTTS--CCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGG---------G--
T ss_pred ccccch--hhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccc---------c--
Confidence 111110 11123344444433 4468899999999999999999999999999998875311 0
Q ss_pred CCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHH
Q 004067 688 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEER 767 (776)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 767 (776)
-....+.++++|+|+++|++|.++|.. .+. + +.-.+.++.++++++|.. ..++++++.+.
T Consensus 141 -------------~~~~~~~~i~~P~Lii~G~~D~~~~~~--~~~---~-~~~~~~~~~~i~~~gH~~-~~~~p~~~~~~ 200 (208)
T d1imja_ 141 -------------INAANYASVKTPALIVYGDQDPMGQTS--FEH---L-KQLPNHRVLIMKGAGHPC-YLDKPEEWHTG 200 (208)
T ss_dssp -------------SCHHHHHTCCSCEEEEEETTCHHHHHH--HHH---H-TTSSSEEEEEETTCCTTH-HHHCHHHHHHH
T ss_pred -------------cccccccccccccccccCCcCcCCcHH--HHH---H-HhCCCCeEEEECCCCCch-hhhCHHHHHHH
Confidence 012346778999999999999887643 222 2 234678999999999975 45678899999
Q ss_pred HHHHHHH
Q 004067 768 IWEFIER 774 (776)
Q Consensus 768 ~~~fl~~ 774 (776)
+.+||+.
T Consensus 201 l~~Fl~~ 207 (208)
T d1imja_ 201 LLDFLQG 207 (208)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999974
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.85 E-value=5.7e-20 Score=186.09 Aligned_cols=221 Identities=16% Similarity=0.150 Sum_probs=152.3
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+++ +|..+++..+.+++ .|+||++||.+.+.. .|. ..++..|.+.||.|+++|+||+|.|......
T Consensus 5 ~~~-g~~~i~y~~~G~~~-------~p~vvl~HG~~~~~~---~~~---~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~ 70 (297)
T d1q0ra_ 5 VPS-GDVELWSDDFGDPA-------DPALLLVMGGNLSAL---GWP---DEFARRLADGGLHVIRYDHRDTGRSTTRDFA 70 (297)
T ss_dssp EEE-TTEEEEEEEESCTT-------SCEEEEECCTTCCGG---GSC---HHHHHHHHTTTCEEEEECCTTSTTSCCCCTT
T ss_pred EEE-CCEEEEEEEecCCC-------CCEEEEECCCCcChh---HHH---HHHHHHHHhCCCEEEEEeCCCCccccccccc
Confidence 444 77889999887433 378999999876543 232 2346788899999999999999988643221
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc---------
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD--------- 679 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~--------- 679 (776)
. ..+...|+...+..+++.- +.+++.++||||||.+++.+|..+|++++++++.++........
T Consensus 71 ~-----~~~~~~~~~~d~~~ll~~l--~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~ 143 (297)
T d1q0ra_ 71 A-----HPYGFGELAADAVAVLDGW--GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRG 143 (297)
T ss_dssp T-----SCCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHT
T ss_pred c-----cccccchhhhhhccccccc--cccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhh
Confidence 1 1234666666666666543 44689999999999999999999999999999876653211000
Q ss_pred ----------------cc-------------ccc------ccc--CCCCC---------------------Cccch----
Q 004067 680 ----------------TF-------------YTE------KYM--GLPSE---------------------DPVGY---- 697 (776)
Q Consensus 680 ----------------~~-------------~~~------~~~--~~~~~---------------------~~~~~---- 697 (776)
.. ... ... ..+.. ....+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (297)
T d1q0ra_ 144 EPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTL 223 (297)
T ss_dssp CCCSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCC
T ss_pred hhhhhhhhhhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhh
Confidence 00 000 000 00000 00000
Q ss_pred hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 698 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 698 ~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
...+....+.++++|+|+++|++|.++++..++.+.+.+ .+.++++++++||.+ ..+..+++.+.+.+||++.
T Consensus 224 ~~~~~~~~l~~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~gH~~-~~e~p~~~~~~i~~~l~~~ 296 (297)
T d1q0ra_ 224 PPPSRAAELREVTVPTLVIQAEHDPIAPAPHGKHLAGLI----PTARLAEIPGMGHAL-PSSVHGPLAEVILAHTRSA 296 (297)
T ss_dssp CCGGGGGGGGGCCSCEEEEEETTCSSSCTTHHHHHHHTS----TTEEEEEETTCCSSC-CGGGHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhccCCceEEEEeCCCCCCCHHHHHHHHHhC----CCCEEEEECCCCCcc-hhhCHHHHHHHHHHHHHhh
Confidence 011233456788999999999999999998887776654 578999999999987 6778889999999999863
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=5.4e-19 Score=176.03 Aligned_cols=243 Identities=16% Similarity=0.176 Sum_probs=175.1
Q ss_pred cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecCCccccee
Q 004067 149 GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 149 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~ 224 (776)
+||++|.+|+..+ .++..... +..|+|||||++|||++.. ++|+++..++..++++.....
T Consensus 20 ~l~i~d~dG~~~~-~l~~~~~~-~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 84 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHRSPQP-LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH------------- 84 (269)
T ss_dssp EEEEEETTSCSCE-EEEEESSC-EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC-------------
T ss_pred EEEEEcCCCCCcE-EEecCCCc-eeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecc-------------
Confidence 6999999999999 77766543 7889999999999999874 599999999999998876543
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEccc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQC 304 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~ 304 (776)
...+.|||||+.|++.....+. ..+..+..........
T Consensus 85 -----~~~~~~spdg~~i~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~---- 122 (269)
T d2hqsa1 85 -----NGAPAFSPDGSKLAFALSKTGS---------------------------------LNLYVMDLASGQIRQV---- 122 (269)
T ss_dssp -----EEEEEECTTSSEEEEEECTTSS---------------------------------CEEEEEETTTCCEEEC----
T ss_pred -----cccceecCCCCeeeEeeecCCc---------------------------------cceeecccccccceee----
Confidence 3357799999999998754332 1223333333333332
Q ss_pred CCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEE
Q 004067 305 GGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI 384 (776)
Q Consensus 305 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (776)
.........+.|+++++.+++...+. ....|++++++++....++..... ...+.++| ++..++
T Consensus 123 -----~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~sp-------dg~~~~ 186 (269)
T d2hqsa1 123 -----TDGRSNNTEPTWFPDSQNLAFTSDQA-GRPQVYKVNINGGAPQRITWEGSQ---NQDADVSS-------DGKFMV 186 (269)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTSSCCEECCCSSSE---EEEEEECT-------TSSEEE
T ss_pred -----eeccccccccccccccccceeccccc-CCceEeeeecccccceeeeccccc---cccccccc-------ccceeE
Confidence 23344556788999999887777665 456799999999888777654322 12222333 455588
Q ss_pred EEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC
Q 004067 385 WASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 464 (776)
Q Consensus 385 ~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~ 464 (776)
+.+...|...|++++.+++..+.+... .....+ .|||||++|+|.+...+. .+||.+++ +|+ ..++|+..
T Consensus 187 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~p-~~SPDG~~i~f~s~~~~~--~~l~~~~~--dg~----~~~~lt~~ 256 (269)
T d2hqsa1 187 MVSSNGGQQHIAKQDLATGGVQVLSST-FLDETP-SLAPNGTMVIYSSSQGMG--SVLNLVST--DGR----FKARLPAT 256 (269)
T ss_dssp EEEECSSCEEEEEEETTTCCEEECCCS-SSCEEE-EECTTSSEEEEEEEETTE--EEEEEEET--TSC----CEEECCCS
T ss_pred EEeecCCceeeeEeecccccceEeecC-ccccce-EECCCCCEEEEEEcCCCC--cEEEEEEC--CCC----CEEEEeCC
Confidence 888888999999999988876555443 233333 599999999999877543 68999998 565 67788887
Q ss_pred CCe-EEEEEcC
Q 004067 465 KGK-HVAVLDH 474 (776)
Q Consensus 465 ~~~-~~~~~sp 474 (776)
.+. ..++|||
T Consensus 257 ~g~~~~p~WSP 267 (269)
T d2hqsa1 257 DGQVKFPAWSP 267 (269)
T ss_dssp SSEEEEEEECC
T ss_pred CCcEEeEEeCC
Confidence 664 4678998
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=7e-21 Score=186.14 Aligned_cols=216 Identities=13% Similarity=-0.025 Sum_probs=136.1
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~ 616 (776)
+.+....|.+ ++|+||++||.+++.. .+..+++.|++.||.|+++|+||+|.+..............
T Consensus 13 ~~~~~~~p~~------~~~~vl~lHG~~~~~~-------~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~ 79 (238)
T d1ufoa_ 13 LSVLARIPEA------PKALLLALHGLQGSKE-------HILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVE 79 (238)
T ss_dssp EEEEEEEESS------CCEEEEEECCTTCCHH-------HHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHH
T ss_pred EEEEecCCCC------CCeEEEEeCCCCCCHH-------HHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhh
Confidence 4445455543 5699999999877643 23345778899999999999999987753321111000000
Q ss_pred c---c-HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCC
Q 004067 617 I---D-AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE 692 (776)
Q Consensus 617 ~---~-~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (776)
. . ..++......+.....++..+++++|+|+||++++.+++.+|+...++....+. .+..... . ......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~~~~~~~~-~~~~~~~----~-~~~~~~ 153 (238)
T d1ufoa_ 80 EVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSG-FPMKLPQ----G-QVVEDP 153 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCS-SCCCCCT----T-CCCCCH
T ss_pred hhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcchhheeeeeeec-ccccccc----c-cccccc
Confidence 0 0 112222222333334456789999999999999999999988765444443333 2211100 0 000000
Q ss_pred CccchhcCChhhhh-ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC--CeEEEEecCCCCCCCCCCcHHHHHHHHH
Q 004067 693 DPVGYEYSSVMHHV-HKMKGKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMPRRHRDRIYMEERIW 769 (776)
Q Consensus 693 ~~~~~~~~~~~~~~-~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 769 (776)
....+...++.... ...+.|+|++||+.|..++++++.++++.+++.+. +++++.++|++|.+. .+....+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~g~gH~~~-----~~~~~~~~ 228 (238)
T d1ufoa_ 154 GVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLT-----PLMARVGL 228 (238)
T ss_dssp HHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCC-----HHHHHHHH
T ss_pred cccchhhhhhhhhhhhhcCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEEECCCCCccC-----HHHHHHHH
Confidence 01111223333333 33468999999999999999999999999988875 578899999999873 23456777
Q ss_pred HHHHHhC
Q 004067 770 EFIERTL 776 (776)
Q Consensus 770 ~fl~~~l 776 (776)
+||.++|
T Consensus 229 ~f~~~~l 235 (238)
T d1ufoa_ 229 AFLEHWL 235 (238)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.84 E-value=8.3e-20 Score=198.13 Aligned_cols=303 Identities=10% Similarity=0.005 Sum_probs=183.1
Q ss_pred CCceeEcCCCCEEEEEeCCCC----cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPDDNLITYLLSPDH----SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~----~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+.+++|||||++|+|.++... ....++|++|+++++.++++.++. .+..+.|
T Consensus 64 i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~------------------------~~~~~~~ 119 (470)
T d2bgra1 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPN------------------------NTQWVTW 119 (470)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCT------------------------TEEEEEE
T ss_pred cceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCc------------------------ccccccc
Confidence 589999999999999875221 223589999999999888876543 6788999
Q ss_pred eecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCC------------------CccCceeCCCCCEEEEEECC----
Q 004067 133 VKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCS------------------PVIDPHLSSDGTMIAFVRDC---- 190 (776)
Q Consensus 133 sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~------------------~~~~~~~SpDg~~la~~~~~---- 190 (776)
|| ||++|||..+.+||++++.+++.. +++..... ....+.|||||++|||.+.+
T Consensus 120 SP---DG~~ia~~~~~~l~~~~~~~g~~~-~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v 195 (470)
T d2bgra1 120 SP---VGHKLAYVWNNDIYVKIEPNLPSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEV 195 (470)
T ss_dssp CS---STTCEEEEETTEEEEESSTTSCCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred cc---CcceeeEeecccceEEECCCCcee-eeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcC
Confidence 99 999999999999999999999887 65543211 12346799999999998631
Q ss_pred c---------------------------------EEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECC
Q 004067 191 E---------------------------------LHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSL 237 (776)
Q Consensus 191 ~---------------------------------l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp 237 (776)
. ++++++.++....+..... ..... .....-..+..+.|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~w~~ 269 (470)
T d2bgra1 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ-----ITAPA-SMLIGDHYLCDVTWAT 269 (470)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEE-----ECCCH-HHHTSCEEEEEEEEEE
T ss_pred ceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccc-----cCCcc-ccCCCCceEEEEEEcC
Confidence 1 2222222222111000000 00000 0000000123577888
Q ss_pred CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCC-CCCC--Ccc
Q 004067 238 DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT-DQNY--DEE 314 (776)
Q Consensus 238 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~-~~~~--~~~ 314 (776)
+++.+++.... .+.. ....++.+|..+++...+....... .... ...
T Consensus 270 ~~~~~~~~~~r-~~~~-----------------------------~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~ 319 (470)
T d2bgra1 270 QERISLQWLRR-IQNY-----------------------------SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (470)
T ss_dssp TTEEEEEEEES-STTE-----------------------------EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred CCceeEEEeec-cCCc-----------------------------eEEEEEEecCCCCcEEEEEEEeeeeeeccceeecc
Confidence 88755544322 2111 1145677778787766553211000 0000 111
Q ss_pred eEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC---
Q 004067 315 YLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT--- 390 (776)
Q Consensus 315 ~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--- 390 (776)
....+.|+++++ .+++.+.+ .+..+||+++.+++..+.++........ .+ +++++.+||++...
T Consensus 320 ~~~~~~~~~~~~~~~~~~s~~-dg~~~ly~~~~~g~~~~~lt~g~~~v~~----~~-------~~d~~~iyf~a~~~~~~ 387 (470)
T d2bgra1 320 RPSEPHFTLDGNSFYKIISNE-EGYRHICYFQIDKKDCTFITKGTWEVIG----IE-------ALTSDYLYYISNEYKGM 387 (470)
T ss_dssp SCCCCEECTTSSEEEEEEECT-TSCEEEEEEETTCSCCEESCCSSSCEEE----EE-------EECSSEEEEEESCGGGC
T ss_pred cCCCceeeecCCCcEEEEecc-CcCceeEEEeccCCceeeeccCCeeEEE----EE-------EECCCEEEEEEecCCCC
Confidence 223467888876 44444444 4677899999999999888764322111 11 34567788887543
Q ss_pred -CceEEEEEeCCCc-eeecccc----CCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 391 -GFRHLYLHDINGT-CLGPITE----GDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 391 -g~~~l~~~~~~g~-~~~~lt~----~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
+..+||+++++++ +.+.||. +...+.++ .|||||++++.+.+..+
T Consensus 388 p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~-~fSpdgky~~~~~s~~~ 438 (470)
T d2bgra1 388 PGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSV-SFSKEAKYYQLRCSGPG 438 (470)
T ss_dssp TTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEE-EECTTSSEEEEEECSBS
T ss_pred cceEEEEEEECCCCCceeEecccccCCCCCEEEE-EECCCCCEEEEEecCCC
Confidence 4569999999875 4556653 23333444 49999999888766533
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.83 E-value=5.6e-20 Score=184.99 Aligned_cols=218 Identities=20% Similarity=0.242 Sum_probs=143.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|.++++..+..++ ..|+||++||++++.. .| ......+.+.||.|+++|+||+|.|......
T Consensus 9 ~~g~~i~y~~~g~~~------~~~~iv~lHG~~g~~~---~~----~~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~--- 72 (290)
T d1mtza_ 9 VNGIYIYYKLCKAPE------EKAKLMTMHGGPGMSH---DY----LLSLRDMTKEGITVLFYDQFGCGRSEEPDQS--- 72 (290)
T ss_dssp ETTEEEEEEEECCSS------CSEEEEEECCTTTCCS---GG----GGGGGGGGGGTEEEEEECCTTSTTSCCCCGG---
T ss_pred ECCEEEEEEEcCCCC------CCCeEEEECCCCCchH---HH----HHHHHHHHHCCCEEEEEeCCCCccccccccc---
Confidence 489999988887533 3488999999876543 12 2234456778999999999999988642111
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc------------
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------------ 679 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------------ 679 (776)
...++++...+..++++-. ..+++.++||||||.+++.+|.++|++++++++.++........
T Consensus 73 ----~~~~~~~~~~l~~ll~~l~-~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 147 (290)
T d1mtza_ 73 ----KFTIDYGVEEAEALRSKLF-GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPA 147 (290)
T ss_dssp ----GCSHHHHHHHHHHHHHHHH-TTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCH
T ss_pred ----cccccchhhhhhhhhcccc-cccccceecccccchhhhhhhhcChhhheeeeecccccCcccchhhhhhhhhhhhH
Confidence 1123334343443333210 23589999999999999999999999999999988765311000
Q ss_pred -----------------c--------cccccccCCCCCC---------------------------ccchhcCChhhhhc
Q 004067 680 -----------------T--------FYTEKYMGLPSED---------------------------PVGYEYSSVMHHVH 707 (776)
Q Consensus 680 -----------------~--------~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 707 (776)
. .+........... .......+......
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (290)
T d1mtza_ 148 KYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKIS 227 (290)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGG
T ss_pred HHHHHHHHhhhhccccchhHHHHHHHHhhhhhcccccchHHHHHHHHHHhhhhhhhhhcchhHHhHhhhhhcccHHHHhh
Confidence 0 0000000000000 00011122334567
Q ss_pred cCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 708 KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 708 ~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++++|+|+++|++|..+| ..+..+.+.+ .+.++++++++||.+ ..+.++++.+.+.+||.+||
T Consensus 228 ~i~~P~l~i~G~~D~~~~-~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~FL~~h~ 290 (290)
T d1mtza_ 228 AIKIPTLITVGEYDEVTP-NVARVIHEKI----AGSELHVFRDCSHLT-MWEDREGYNKLLSDFILKHL 290 (290)
T ss_dssp GCCSCEEEEEETTCSSCH-HHHHHHHHHS----TTCEEEEETTCCSCH-HHHSHHHHHHHHHHHHHTCC
T ss_pred cccceEEEEEeCCCCCCH-HHHHHHHHHC----CCCEEEEECCCCCch-HHhCHHHHHHHHHHHHHHhC
Confidence 788999999999998764 5566665554 467899999999976 55678899999999999986
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.82 E-value=9.8e-20 Score=189.79 Aligned_cols=247 Identities=15% Similarity=0.164 Sum_probs=166.8
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc----ccccccchhhhHHHHhCCcEEEEECCCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC----DSWINTVDMRAQYLRSKGILVWKLDNRGT 599 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~----~~~~~~~~~~~~~l~~~G~~v~~~d~rg~ 599 (776)
.+++.++..||++|.+.+|+|++. +++|+||+.|+........ ..+.......++.|+++||+|+.+|.||+
T Consensus 24 ~~~v~i~~rDG~~L~~~v~~P~~~----~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~ 99 (381)
T d1mpxa2 24 KREVMIPMRDGVKLHTVIVLPKGA----KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGK 99 (381)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTS
T ss_pred EEEEEEECCCCCEEEEEEEEeCCC----CCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEecCcc
Confidence 467899999999999999999774 6899999999743221110 11111222346889999999999999999
Q ss_pred CCCchhhhhh-----hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 600 ARRGLKFEAS-----IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 600 g~~~~~~~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
|.|+..+... .....+..+..|..++++++.++..++.+||+++|+|+||++++++|+..|+.++|+|+.+|+.+
T Consensus 100 g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~~~~d 179 (381)
T d1mpxa2 100 YGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMID 179 (381)
T ss_dssp TTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCC
T ss_pred CCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeeccccc
Confidence 9987654321 12233345789999999999999878889999999999999999999999999999999999887
Q ss_pred cccccccccc-----c----------ccCCCC-----------------------------------------CCccchh
Q 004067 675 WDGYDTFYTE-----K----------YMGLPS-----------------------------------------EDPVGYE 698 (776)
Q Consensus 675 ~~~~~~~~~~-----~----------~~~~~~-----------------------------------------~~~~~~~ 698 (776)
+..+...+.. . ....+. .....|.
T Consensus 180 ~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~ 259 (381)
T d1mpxa2 180 GWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQ 259 (381)
T ss_dssp TTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHH
T ss_pred cccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCccchhh
Confidence 5422111000 0 000000 0012222
Q ss_pred cCChhh--hhccCCCcEEEEecCCCCccChHHHHHHHHHHHH---CCCCeEEEEecCCCCCC-------------CCCCc
Q 004067 699 YSSVMH--HVHKMKGKLLLVHGMIDENVHFRHTARLINALVA---ARKPYEILIFPDERHMP-------------RRHRD 760 (776)
Q Consensus 699 ~~~~~~--~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~---~~~~~~~~~~~~~~H~~-------------~~~~~ 760 (776)
..++.. ...++++|+|+++|..|...... +...++.++. .+.+.++++-|. +|.- .....
T Consensus 260 ~~s~~~~~~~~~i~vP~l~i~G~~d~~~~~~-~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~~~~~~~~~~~~ 337 (381)
T d1mpxa2 260 EQALDKVMARTPLKVPTMWLQGLWDQEDMWG-AIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTA 337 (381)
T ss_dssp TTCHHHHHHTSCCCSCEEEEEETTCSSCSSH-HHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHH
T ss_pred hcCchhhhhhccccCceEEEeccccCCcccc-HHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCcCCccccccchh
Confidence 333333 23468899999999999876554 3444454433 346778888876 6742 11112
Q ss_pred HHHHHHHHHHHHHHhC
Q 004067 761 RIYMEERIWEFIERTL 776 (776)
Q Consensus 761 ~~~~~~~~~~fl~~~l 776 (776)
.......+++||++||
T Consensus 338 ~~~~~~~~l~wFD~~L 353 (381)
T d1mpxa2 338 RQFRHDVLRPFFDQYL 353 (381)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHh
Confidence 3344566789999886
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.82 E-value=8e-20 Score=182.51 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=145.9
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
++++.||.+|++..+.|++. |+||++||.+++.. .|...+..|++.||.|+++|+||+|.+.....
T Consensus 2 ~i~~~dG~~l~y~~~G~~~~-------~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~~~ 67 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRDG-------LPVVFHHGWPLSAD-------DWDNQMLFFLSHGYRVIAHDRRGHGRSDQPST 67 (275)
T ss_dssp EEECTTSCEEEEEEESCTTS-------CEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS
T ss_pred EEEecCCCEEEEEEecCCCC-------CeEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 57888999999999987552 57889999876643 34556788989999999999999998864221
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeech-HHHHHHHHHhhCCCceEEEEEcCCCCCccccc-------
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSY-GGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------- 679 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~-GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------- 679 (776)
....+++.+.+..+++.. +.+++.++|||+ ||.++..++.++|++++++++.++........
T Consensus 68 --------~~~~~~~~~~~~~~l~~l--~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 137 (275)
T d1a88a_ 68 --------GHDMDTYAADVAALTEAL--DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGL 137 (275)
T ss_dssp --------CCSHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSB
T ss_pred --------cccccccccccccccccc--cccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhh
Confidence 123444444444444432 345788899887 56666667888999999999887653211000
Q ss_pred -----------------cccc----ccccCC--CC-C-Cc----------------------cchhcCChhhhhccCCCc
Q 004067 680 -----------------TFYT----EKYMGL--PS-E-DP----------------------VGYEYSSVMHHVHKMKGK 712 (776)
Q Consensus 680 -----------------~~~~----~~~~~~--~~-~-~~----------------------~~~~~~~~~~~~~~i~~P 712 (776)
..+. ..+... .. . .. ..+...+....+.++++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 217 (275)
T d1a88a_ 138 PLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVP 217 (275)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSC
T ss_pred hhhhhhhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhccc
Confidence 0000 000000 00 0 00 001112233446778999
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+|+++|++|..+|.....+...++ ..++++++++++||.+ ..+.++++.+.+.+||+
T Consensus 218 ~l~i~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 218 VLVAHGTDDQVVPYADAAPKSAEL---LANATLKSYEGLPHGM-LSTHPEVLNPDLLAFVK 274 (275)
T ss_dssp EEEEEETTCSSSCSTTTHHHHHHH---STTEEEEEETTCCTTH-HHHCHHHHHHHHHHHHH
T ss_pred cceeecCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHHc
Confidence 999999999999887655444433 3578999999999986 55678999999999997
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.82 E-value=8.9e-20 Score=183.06 Aligned_cols=228 Identities=13% Similarity=0.033 Sum_probs=147.0
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+..+..+++ ++.++++....+++ .|+||++||.+++...... |..++..|++ +|.|+++|+||+|.|
T Consensus 3 ~~~~~~~~~-~~~~~h~~~~G~~~-------~p~ivllHG~~~~~~~~~~----~~~~~~~L~~-~~~vi~~D~~G~G~S 69 (281)
T d1c4xa_ 3 EIIEKRFPS-GTLASHALVAGDPQ-------SPAVVLLHGAGPGAHAASN----WRPIIPDLAE-NFFVVAPDLIGFGQS 69 (281)
T ss_dssp CCEEEEECC-TTSCEEEEEESCTT-------SCEEEEECCCSTTCCHHHH----HGGGHHHHHT-TSEEEEECCTTSTTS
T ss_pred EEEEEEEcc-CCEEEEEEEEecCC-------CCEEEEECCCCCCCcHHHH----HHHHHHHHhC-CCEEEEEeCCCCccc
Confidence 344555654 56778888877544 3899999997654332122 3344666754 899999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc----
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---- 678 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---- 678 (776)
......... .....++....+..++++. ..+++.++||||||.+++.+|.++|+++++++++++.......
T Consensus 70 ~~~~~~~~~---~~~~~~~~~~~i~~~i~~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~ 144 (281)
T d1c4xa_ 70 EYPETYPGH---IMSWVGMRVEQILGLMNHF--GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPE 144 (281)
T ss_dssp CCCSSCCSS---HHHHHHHHHHHHHHHHHHH--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHH
T ss_pred ccccccccc---chhhHHHhhhhcccccccc--ccccceeccccccccccccccccccccccceEEeccccCccccchhH
Confidence 543211000 0011233333333333322 3358999999999999999999999999999988875331100
Q ss_pred ----cccc-----------cccccCCCCCCc-------------------------------cchhcCChhhhhccCCCc
Q 004067 679 ----DTFY-----------TEKYMGLPSEDP-------------------------------VGYEYSSVMHHVHKMKGK 712 (776)
Q Consensus 679 ----~~~~-----------~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~i~~P 712 (776)
...+ ...+...+.... ...........+.+++.|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 224 (281)
T d1c4xa_ 145 LARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHD 224 (281)
T ss_dssp HHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSC
T ss_pred HHHHHHhhhhcccchhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccc
Confidence 0000 000111111000 000111223446788899
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+|+++|++|..+|++.++.+.+.+ .++++++++++||.. ..+.++++.+.+.+||+
T Consensus 225 ~lii~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 225 VLVFHGRQDRIVPLDTSLYLTKHL----KHAELVVLDRCGHWA-QLERWDAMGPMLMEHFR 280 (281)
T ss_dssp EEEEEETTCSSSCTHHHHHHHHHC----SSEEEEEESSCCSCH-HHHSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCcCHHHHHHHHHHC----CCCEEEEECCCCCch-HHhCHHHHHHHHHHHhC
Confidence 999999999999998888887765 567999999999976 56778999999999996
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.82 E-value=2e-19 Score=186.30 Aligned_cols=235 Identities=17% Similarity=0.199 Sum_probs=168.9
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+.+.++..||++|.+.+|.|+.. +++|+||+.||........ + ......++.|+++||+|+++|.||+|.|+
T Consensus 5 ~~~v~ipmrDGv~L~~~vy~P~~~----~~~P~il~~~pyg~~~~~~--~-~~~~~~~~~~a~~GY~vv~~d~RG~g~S~ 77 (347)
T d1ju3a2 5 ASNVMVPMRDGVRLAVDLYRPDAD----GPVPVLLVRNPYDKFDVFA--W-STQSTNWLEFVRDGYAVVIQDTRGLFASE 77 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEEECCS----SCEEEEEEEESSCTTCCHH--H-HTTSCCTHHHHHTTCEEEEEECTTSTTCC
T ss_pred EeCeEEECCCCCEEEEEEEEcCCC----CCEEEEEEEcCCCCccccC--c-CcccHHHHHHHHCCCEEEEEeeCCccccC
Confidence 467899999999999999999763 6899999999843321110 0 01222367899999999999999999998
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc--
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-- 681 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~-- 681 (776)
..+.. ...+..|..++++++.++++.+ .||+++|+|+||++++.+|+..|..++|++...+..++......
T Consensus 78 G~~~~------~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~ 150 (347)
T d1ju3a2 78 GEFVP------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGP 150 (347)
T ss_dssp SCCCT------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCT
T ss_pred Ccccc------ccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhc
Confidence 65532 2234678899999999998866 79999999999999999999999999999999888764210000
Q ss_pred -----------cc---------cc---------------------------------------------ccCCCCCCccc
Q 004067 682 -----------YT---------EK---------------------------------------------YMGLPSEDPVG 696 (776)
Q Consensus 682 -----------~~---------~~---------------------------------------------~~~~~~~~~~~ 696 (776)
+. .. .+.........
T Consensus 151 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (347)
T d1ju3a2 151 GGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDES 230 (347)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHH
T ss_pred CCccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhh
Confidence 00 00 00000012234
Q ss_pred hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC------------CCCcHHHH
Q 004067 697 YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR------------RHRDRIYM 764 (776)
Q Consensus 697 ~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~------------~~~~~~~~ 764 (776)
|...++...+.++++|+|+++|..|..++ .+.+++++++. +.+.++++-|. +|... ......+.
T Consensus 231 w~~~~~~~~~~~i~vP~L~i~G~~D~~~~--~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~~~~~~~~ 306 (347)
T d1ju3a2 231 WQSISLFERLGGLATPALITAGWYDGFVG--ESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEA 306 (347)
T ss_dssp HHTTCCHHHHTTCCCCEEEEEEEECTTHH--HHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGGSCCHHHH
T ss_pred hhcCCHHHHhhcCCCCEEEeccccCCCcc--hhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccccccHHHH
Confidence 55667788899999999999999997654 45777777753 45677887775 55421 12235677
Q ss_pred HHHHHHHHHHhC
Q 004067 765 EERIWEFIERTL 776 (776)
Q Consensus 765 ~~~~~~fl~~~l 776 (776)
...+++||++||
T Consensus 307 ~~~~l~wfD~~L 318 (347)
T d1ju3a2 307 TTMHKAFFDRHL 318 (347)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 788999999987
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.82 E-value=1.4e-19 Score=180.73 Aligned_cols=217 Identities=16% Similarity=0.166 Sum_probs=142.1
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+++.||..+++..+. + .|+||++||.+++.. .|..++..|.++||.|+++|+||+|.|.....
T Consensus 3 ~~t~dG~~l~y~~~G--~-------g~~ivlvHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~- 65 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDWG--Q-------GRPVVFIHGWPLNGD-------AWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWD- 65 (274)
T ss_dssp EECTTSCEEEEEEEC--S-------SSEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS-
T ss_pred EECcCCCEEEEEEEC--C-------CCeEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEeCCCCcccccccc-
Confidence 677899999988764 1 146788999876643 34556778889999999999999998864321
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCCCCccccc--------
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDGYD-------- 679 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~~~~~~~~-------- 679 (776)
.....++...+..+++.. ..+++.++||||||.+++.++++ +|+++++++++++........
T Consensus 66 -------~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~ 136 (274)
T d1a8qa_ 66 -------GYDFDTFADDLNDLLTDL--DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVP 136 (274)
T ss_dssp -------CCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred -------cccchhhHHHHHHHHHHh--hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhh
Confidence 122344444444444432 34689999999999988886655 588999988877643211000
Q ss_pred -------------------ccccccccC--CCCCCc------------------------cchhcCChhhhhccCCCcEE
Q 004067 680 -------------------TFYTEKYMG--LPSEDP------------------------VGYEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 680 -------------------~~~~~~~~~--~~~~~~------------------------~~~~~~~~~~~~~~i~~P~l 714 (776)
....+.+.. .+.... ..+...+....+.++++|+|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl 216 (274)
T d1a8qa_ 137 DEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTL 216 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEE
T ss_pred HHHHHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccceee
Confidence 000000110 000000 00112223345678899999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCC-CCcHHHHHHHHHHHHHH
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR-HRDRIYMEERIWEFIER 774 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~fl~~ 774 (776)
+++|++|..++++...+....+ -.++++++++++||.... .+.++.+.+.+.+||++
T Consensus 217 ii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 217 VVHGDDDQVVPIDATGRKSAQI---IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred eeccCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 9999999999987654444433 356799999999997632 35678899999999974
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.81 E-value=3.3e-19 Score=178.76 Aligned_cols=249 Identities=16% Similarity=0.099 Sum_probs=167.2
Q ss_pred EEEeecCCC--ceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-------CcEEEEecCCC
Q 004067 130 YEWVKTSSK--KKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-------CELHVLNLLIN 200 (776)
Q Consensus 130 ~~~sp~~~d--g~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-------~~l~~~~l~~g 200 (776)
+..|| | |++|+|..+++||++|+++++.+ +||.++.. +..|.|||||++|||+.. .+||++++.+|
T Consensus 4 ~~~sP---di~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~-~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 4 LLLNP---DIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGV-INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp CCEEE---EEETTEEEEEETTEEEEEETTTCCEE-EEECSSSE-EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred cccCC---CCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCc-ccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 45788 9 99999999999999999999999 89887654 788999999999999974 25999999999
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+.++|+..+... ... ......+.|||||+.|+|........
T Consensus 79 ~~~~lt~~~~~~---~~~--------~~~~~~~~~spdg~~l~~~~~~~~~~---------------------------- 119 (281)
T d1k32a2 79 EIKRITYFSGKS---TGR--------RMFTDVAGFDPDGNLIISTDAMQPFS---------------------------- 119 (281)
T ss_dssp EEEECCCCCEEE---ETT--------EECSEEEEECTTCCEEEEECTTSSST----------------------------
T ss_pred ceEEeeecCCCc---cCc--------cccccccccCCCCCEEEEEEccCCCc----------------------------
Confidence 999998654310 000 00123678999999999976432211
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCc--------eEEEEEEECCCCceE
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQT--------KLKVLKFDIKTGQRK 352 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~l~~~d~~~g~~~ 352 (776)
....++.++.++++...... .. ....|++|+..+++....... ...........+...
T Consensus 120 --~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (281)
T d1k32a2 120 --SMTCLYRVENDGINFVPLNL---------GP---ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK 185 (281)
T ss_dssp --TCCEEEEEEGGGTEEEECCS---------CS---CSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE
T ss_pred --cceeeeeecCCCceeEEecC---------Cc---cceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccccee
Confidence 11346777887777655422 11 124677888755555332211 111222222333333
Q ss_pred EEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC-eEEEEEEeecCCCcEEEEE
Q 004067 353 VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFT 431 (776)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~-~~~~~~~~~s~dg~~i~~~ 431 (776)
.++....... .| .+.++.+++.++..+..+||+++++|++.++||... ..+ ..||+||+.|+|.
T Consensus 186 ~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~---~~~SpDG~~I~f~ 250 (281)
T d1k32a2 186 KIVDMSTHVS-------SP-----VIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP---RHLNTDGRRILFS 250 (281)
T ss_dssp EEECCSSCCE-------EE-----EEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE---EEEEESSSCEEEE
T ss_pred eccCCccccc-------ee-----eeeccccceecccccccceEEEeCCCCceEEeecCCCccc---ccCcCCCCEEEEE
Confidence 3333222111 11 334567888888889999999999999999998763 322 3489999999997
Q ss_pred EccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 432 GTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
+. .+||.+++ ++. +.++|+-
T Consensus 251 ~~------~~l~~~d~--~~g----~~~~i~~ 270 (281)
T d1k32a2 251 KG------GSIYIFNP--DTE----KIEKIEI 270 (281)
T ss_dssp ET------TEEEEECT--TTC----CEEECCC
T ss_pred eC------CEEEEEEC--CCC----CEEEecc
Confidence 64 26899998 343 5666654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.8e-18 Score=185.16 Aligned_cols=298 Identities=12% Similarity=0.070 Sum_probs=181.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCC----cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEE
Q 004067 56 APTSIGFSPDDNLITYLLSPDH----SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYE 131 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~----~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (776)
.+..+.|||||++|+|..+... .....+|++|+++++.++|+..... ...+..+.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~---------------------~~~l~~~~ 120 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS---------------------NAKLQYAG 120 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC---------------------SCCCSBCC
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC---------------------ccccceee
Confidence 3467889999999999875332 2245899999999999888743220 12345678
Q ss_pred EeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCC-CC-----------------ccCceeCCCCCEEEEEECC---
Q 004067 132 WVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSC-SP-----------------VIDPHLSSDGTMIAFVRDC--- 190 (776)
Q Consensus 132 ~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~-----------------~~~~~~SpDg~~la~~~~~--- 190 (776)
||| ||++|||..+++||+++..+++.+ ++|.... .. -..+.|||||++|||.+.+
T Consensus 121 wSP---DG~~iafv~~~nl~~~~~~~~~~~-~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~ 196 (465)
T d1xfda1 121 WGP---KGQQLIFIFENNIYYCAHVGKQAI-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR 196 (465)
T ss_dssp BCS---STTCEEEEETTEEEEESSSSSCCE-EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred ecc---CCceEEEEecceEEEEecCCCceE-EEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccc
Confidence 999 999999999999999999998887 6654322 11 1235699999999998621
Q ss_pred --------------------------------cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCC
Q 004067 191 --------------------------------ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD 238 (776)
Q Consensus 191 --------------------------------~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD 238 (776)
.|++++++++..+......... . ..+ .....+.|+||
T Consensus 197 V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~---~-~~~-------~y~~~~~W~~d 265 (465)
T d1xfda1 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP---R-MRE-------YYITMVKWATS 265 (465)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG---G-GSS-------EEEEEEEESSS
T ss_pred cceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcC---c-ccc-------ceeeeeEEcCC
Confidence 2667777666554433221110 0 000 01235789999
Q ss_pred CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCC-cceEE
Q 004067 239 SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYD-EEYLA 317 (776)
Q Consensus 239 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~-~~~~~ 317 (776)
++.+++.. ++.+ ....|.++|..+|+.+.+...... .+ .....
T Consensus 266 ~~~~~~~~-nR~q-------------------------------~~~~i~~~d~~tg~~~~~~~e~~~----~wv~~~~~ 309 (465)
T d1xfda1 266 TKVAVTWL-NRAQ-------------------------------NVSILTLCDATTGVCTKKHEDESE----AWLHRQNE 309 (465)
T ss_dssp SEEEEEEE-ETTS-------------------------------CEEEEEEEETTTCCEEEEEEEECS----SCCCCCCC
T ss_pred CeEEEEEE-cccc-------------------------------ccceEEEEcCCCCcEEEEEEEcCC----ceEeccCC
Confidence 87544443 3332 125689999999998877543110 10 11124
Q ss_pred EEEeccCCeEEEEE-EeecCceEEEEEEEC-------CCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc
Q 004067 318 RVNWMHGNILTAQV-LNRSQTKLKVLKFDI-------KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 389 (776)
Q Consensus 318 ~~~~SpDg~~l~~~-~~~~~~~~~l~~~d~-------~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (776)
.+.|+|||+.+++. .....+...++.+++ .++..+.||.. .|.... ... +..+++.+||++..
T Consensus 310 ~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G---~w~V~~-i~~-----~d~~~~~vyF~a~~ 380 (465)
T d1xfda1 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG---DWDVTK-ILA-----YDEKGNKIYFLSTE 380 (465)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS---SSCEEE-EEE-----EETTTTEEEEEESS
T ss_pred ceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC---CceEEE-EEE-----EcCCCCEEEEEEeC
Confidence 57999999955443 222223444565543 34445666643 232211 000 01234568898865
Q ss_pred --CCceEEEEEeCCCceeec-cccC---CeEEEEEEeecCCCcEEEEEEccC
Q 004067 390 --TGFRHLYLHDINGTCLGP-ITEG---DWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 390 --~g~~~l~~~~~~g~~~~~-lt~~---~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.+..|||+++++|+..++ ||.. ....-+. .|||+|++++......
T Consensus 381 ~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~-~~S~~~~y~v~~~s~~ 431 (465)
T d1xfda1 381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA-SFSHSMDFFLLKCEGP 431 (465)
T ss_dssp SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE-EECTTSSEEEEECCSS
T ss_pred CCCCceEEEEEECCCCCcceeeccccCCCCCEEEE-EECCCCCEEEEEeecC
Confidence 357899999999876544 3321 1112233 4999999877665543
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.81 E-value=1.4e-19 Score=176.18 Aligned_cols=203 Identities=18% Similarity=0.174 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
++||++||.+++.. .|..+++.|+++||.|+++|+||+|.+.......... ....+....+..+...
T Consensus 12 ~~vvliHG~~~~~~-------~~~~l~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~----~~~~~~~~~~~~~~~~-- 78 (242)
T d1tqha_ 12 RAVLLLHGFTGNSA-------DVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPD----DWWQDVMNGYEFLKNK-- 78 (242)
T ss_dssp CEEEEECCTTCCTH-------HHHHHHHHHHHTTCEEEECCCTTSSSCHHHHTTCCHH----HHHHHHHHHHHHHHHH--
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEeCCCCccccccccccchh----HHHHHHHHHHhhhhhc--
Confidence 56888999876643 3556788999999999999999999876433221111 1133444444444443
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc------cc---ccc-----------c---cccCCCC
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY------DT---FYT-----------E---KYMGLPS 691 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------~~---~~~-----------~---~~~~~~~ 691 (776)
+.++++++||||||.+++.++.++|......+ .++....... .. .+. . .......
T Consensus 79 -~~~~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (242)
T d1tqha_ 79 -GYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTM-CAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPM 156 (242)
T ss_dssp -TCCCEEEEEETHHHHHHHHHHTTSCCSCEEEE-SCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCC
T ss_pred -ccCceEEEEcchHHHHhhhhcccCcccccccc-cccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhcc
Confidence 34689999999999999999999887644333 3332211000 00 000 0 0000000
Q ss_pred CCcc--chhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHH
Q 004067 692 EDPV--GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIW 769 (776)
Q Consensus 692 ~~~~--~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 769 (776)
.... ..........+..++.|+|+++|++|..++++.+..+++.+ .+.++++++++++||.......++.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~ 234 (242)
T d1tqha_ 157 KTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEI--ESPVKQIKWYEQSGHVITLDQEKDQLHEDIY 234 (242)
T ss_dssp TTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHC--CCSSEEEEEETTCCSSGGGSTTHHHHHHHHH
T ss_pred chhhcccccccccccccceeccccceeecccCCccCHHHHHHHHHHc--CCCCcEEEEECCCCCcCccccCHHHHHHHHH
Confidence 0000 00111233456788899999999999999999999998876 2456899999999998755567889999999
Q ss_pred HHHHH
Q 004067 770 EFIER 774 (776)
Q Consensus 770 ~fl~~ 774 (776)
+||++
T Consensus 235 ~Fl~~ 239 (242)
T d1tqha_ 235 AFLES 239 (242)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99986
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.80 E-value=2.2e-18 Score=175.82 Aligned_cols=234 Identities=17% Similarity=0.094 Sum_probs=148.9
Q ss_pred CceEEEEEcCCCc-EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCC
Q 004067 523 PPDIVQIQANDGT-VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTA 600 (776)
Q Consensus 523 ~~~~~~~~~~dg~-~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g 600 (776)
..+.+.+++.+|. .+.+++|.|++.. ++.|+||++|||+....... .....+..++ +.||+|+++|||...
T Consensus 49 ~~~~~~~~~~~g~~~i~~~~~~P~~~~---~~~Pvvv~iHGGG~~~g~~~----~~~~~~~~la~~~G~~V~~vdYrl~p 121 (317)
T d1lzla_ 49 SLRELSAPGLDGDPEVKIRFVTPDNTA---GPVPVLLWIHGGGFAIGTAE----SSDPFCVEVARELGFAVANVEYRLAP 121 (317)
T ss_dssp EEEEEEECCSTTCCCEEEEEEEESSCC---SCEEEEEEECCSTTTSCCGG----GGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred eEEEEEEecCCCCceEEEEEECCCCCC---CCCcEEEEecCccccccccc----ccchHHHhHHhhcCCccccccccccc
Confidence 4577888888874 6999999998642 57899999999864322111 1222344454 569999999999765
Q ss_pred CCchhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCCC
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVT 673 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~~ 673 (776)
+..- ...++|+.+++.++.++ ..+|+++|+|+|+|+||++++.++.+.++ .....+...+..
T Consensus 122 e~~~-----------~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (317)
T d1lzla_ 122 ETTF-----------PGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL 190 (317)
T ss_dssp TSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred cccc-----------cccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccccc
Confidence 4321 11267888888888764 45789999999999999999998865221 112233222221
Q ss_pred C-ccc---ccc-------------cccccccC---CCCCCccchhcCChhhhhc-cCCCcEEEEecCCCCccChHHHHHH
Q 004067 674 S-WDG---YDT-------------FYTEKYMG---LPSEDPVGYEYSSVMHHVH-KMKGKLLLVHGMIDENVHFRHTARL 732 (776)
Q Consensus 674 ~-~~~---~~~-------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~i~~P~lii~G~~D~~v~~~~~~~~ 732 (776)
. ... +.. .....+.. .............+..... .-..|+|+++|+.|.. ..++.++
T Consensus 191 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~l--~~~~~~~ 268 (317)
T d1lzla_ 191 DDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPL--RDEGIEY 268 (317)
T ss_dssp CTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTT--HHHHHHH
T ss_pred cccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCCC--HHHHHHH
Confidence 1 100 000 00000001 1111111111112222111 1237999999999954 5689999
Q ss_pred HHHHHHCCCCeEEEEecCCCCCCCC---CCcHHHHHHHHHHHHHHhC
Q 004067 733 INALVAARKPYEILIFPDERHMPRR---HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 733 ~~~l~~~~~~~~~~~~~~~~H~~~~---~~~~~~~~~~~~~fl~~~l 776 (776)
+++|++.|+++++++|++++|.|.. .....+....+++||+++|
T Consensus 269 ~~~L~~~G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~L 315 (317)
T d1lzla_ 269 ALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGL 315 (317)
T ss_dssp HHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998732 2223466778899999886
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.80 E-value=2.3e-19 Score=188.34 Aligned_cols=247 Identities=14% Similarity=0.138 Sum_probs=157.0
Q ss_pred cCCCCceEEEEEcCCCcEEEEEEEcCC-CCCCCCCCceEEEEEcCCCCcccccccccccc--hhhhHHHHhCCcEEEEEC
Q 004067 519 LQLEPPDIVQIQANDGTVLYGALYKPD-ESRYGPPPYKTLISVYGGPCVQLVCDSWINTV--DMRAQYLRSKGILVWKLD 595 (776)
Q Consensus 519 ~~~~~~~~~~~~~~dg~~l~~~~~~P~-~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~--~~~~~~l~~~G~~v~~~d 595 (776)
+.+ ..|...+++.||..|..+.+... ......++.|+||++||.+++.. .|.... ..++..|+++||.|+++|
T Consensus 23 ~~y-~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~---~~~~~~~~~sla~~L~~~Gy~V~~~D 98 (377)
T d1k8qa_ 23 WGY-PAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASAT---NWISNLPNNSLAFILADAGYDVWLGN 98 (377)
T ss_dssp TTC-CCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGG---GGSSSCTTTCHHHHHHHTTCEEEECC
T ss_pred cCC-CceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchh---HHhhcCccchHHHHHHHCCCEEEEEc
Confidence 344 56788999999988877765422 11123356799999999877654 342221 235788999999999999
Q ss_pred CCCCCCCchhhhhhh-hhc-----cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEE--
Q 004067 596 NRGTARRGLKFEASI-KHN-----CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV-- 667 (776)
Q Consensus 596 ~rg~g~~~~~~~~~~-~~~-----~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v-- 667 (776)
+||+|.|........ ... +......|+.++++++++.. ..+++.++||||||++++.++..+|+.++.++
T Consensus 99 ~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~--g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~~ 176 (377)
T d1k8qa_ 99 SRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTF 176 (377)
T ss_dssp CTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEE
T ss_pred CCCCCCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHc--CCCCEEEEEecchHHHHHHHHHhhhhhhhhceeE
Confidence 999998864321100 000 00112557888999988764 34689999999999999999999987654333
Q ss_pred -EcCCCCCccccc----c----------------------ccc---------cc------------ccCCC--CCCc---
Q 004067 668 -SGAPVTSWDGYD----T----------------------FYT---------EK------------YMGLP--SEDP--- 694 (776)
Q Consensus 668 -~~~~~~~~~~~~----~----------------------~~~---------~~------------~~~~~--~~~~--- 694 (776)
..+|........ . ... .. ..+.. ..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (377)
T d1k8qa_ 177 YALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRL 256 (377)
T ss_dssp EEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGH
T ss_pred eeccccccccchhhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcccccHHHh
Confidence 333322110000 0 000 00 00000 0000
Q ss_pred ----------------------------cch-------------hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHH
Q 004067 695 ----------------------------VGY-------------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733 (776)
Q Consensus 695 ----------------------------~~~-------------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~ 733 (776)
..+ ....+...+.++++|+|+++|+.|.+++++.++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~~~~~~~l~ 336 (377)
T d1k8qa_ 257 DVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLL 336 (377)
T ss_dssp HHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHH
T ss_pred hhhhhcccccchHHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccCHHHHHHHH
Confidence 000 000112235678899999999999999999888877
Q ss_pred HHHHHCCCCeEEEEecCCCCC--CCCCCcHHHHHHHHHHHHHH
Q 004067 734 NALVAARKPYEILIFPDERHM--PRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~ 774 (776)
+.+ ....++++++++||. +...+..++++..|++||++
T Consensus 337 ~~l---p~~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 337 SKL---PNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp TTC---TTEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred HHC---CCCeEEEEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 765 233578899999996 22456788999999999985
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.79 E-value=6.8e-18 Score=161.00 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=154.1
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
+.|+.++| +|+++...|+. ...|++|++||.+......+ ..-...+++.|.++||.|+.+|+||.|.|...+
T Consensus 3 v~i~g~~G-~Le~~~~~~~~-----~~~~~~l~~Hp~p~~GG~~~--~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~~ 74 (218)
T d2i3da1 3 VIFNGPAG-RLEGRYQPSKE-----KSAPIAIILHPHPQFGGTMN--NQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEF 74 (218)
T ss_dssp EEEEETTE-EEEEEEECCSS-----TTCCEEEEECCCGGGTCCTT--SHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCC
T ss_pred EEEeCCCc-cEEEEEeCCCC-----CCCCEEEEECCCcCcCCcCC--cHHHHHHHHHHHhcCeeEEEEecCccCCCcccc
Confidence 66888888 69998765543 35689999998553222111 011233577889999999999999999886544
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccc
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY 686 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (776)
. .+..+.+|..++++++..+.. ...++.++|+|+||.+++.++.+.+.. .++++..|.....
T Consensus 75 ~------~~~~e~~d~~aa~~~~~~~~~-~~~~~~~~g~S~G~~~a~~~a~~~~~~-~~~~~~~~~~~~~---------- 136 (218)
T d2i3da1 75 D------HGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPEI-EGFMSIAPQPNTY---------- 136 (218)
T ss_dssp C------SSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTTE-EEEEEESCCTTTS----------
T ss_pred c------cchhHHHHHHHHHhhhhcccc-cccceeEEeeehHHHHHHHHHHhhccc-cceeecccccccc----------
Confidence 2 233457899999999998754 345789999999999999999887654 5555555442210
Q ss_pred cCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHC-CCCeEEEEecCCCCCCCCCCcHHHHH
Q 004067 687 MGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA-RKPYEILIFPDERHMPRRHRDRIYME 765 (776)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~-~~~~~~~~~~~~~H~~~~~~~~~~~~ 765 (776)
....+.....|+|+++|..|.+++.....++.+.++.. +...+++++|+++|.|. ...+.+.
T Consensus 137 ---------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~--g~~~~l~ 199 (218)
T d2i3da1 137 ---------------DFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN--GKVDELM 199 (218)
T ss_dssp ---------------CCTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--TCHHHHH
T ss_pred ---------------chhhccccCCCceeeecccceecChHHHHHHHHHHhhccCCCccEEEeCCCCCCCc--CCHHHHH
Confidence 01123345679999999999999999999999988763 56789999999999774 5678999
Q ss_pred HHHHHHHHHhC
Q 004067 766 ERIWEFIERTL 776 (776)
Q Consensus 766 ~~~~~fl~~~l 776 (776)
+.+.+||+++|
T Consensus 200 ~~v~~~l~~~l 210 (218)
T d2i3da1 200 GECEDYLDRRL 210 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999875
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.79 E-value=8e-19 Score=166.28 Aligned_cols=193 Identities=13% Similarity=0.066 Sum_probs=138.3
Q ss_pred EEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh-c----c
Q 004067 540 ALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH-N----C 614 (776)
Q Consensus 540 ~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~-~----~ 614 (776)
.++.|... +++|+||++||.+++.. .+..++..++ .++.|++++.+..+.....+...... . .
T Consensus 4 ~i~~~~~~----~~~P~vi~lHG~g~~~~-------~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (202)
T d2h1ia1 4 HVFQKGKD----TSKPVLLLLHGTGGNEL-------DLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEED 71 (202)
T ss_dssp EEEECCSC----TTSCEEEEECCTTCCTT-------TTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHH
T ss_pred ccCCCCCC----CCCCEEEEECCCCCCHH-------HHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHH
Confidence 35666553 56799999999765432 2334566666 47889998764332211111000000 0 0
Q ss_pred CCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCc
Q 004067 615 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDP 694 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (776)
.....+++...+..+.++..+|..+|+++|+|+||.+++.+++++|+.+.++++.+|.....
T Consensus 72 ~~~~~~~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~------------------ 133 (202)
T d2h1ia1 72 LIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR------------------ 133 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS------------------
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc------------------
Confidence 01124567777777887888899999999999999999999999999999999988764310
Q ss_pred cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 695 VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 695 ~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
..........|++++||++|++||++.++++++.|++.+.+++++.||+ +|.+. .+..+.+.+||.+
T Consensus 134 -------~~~~~~~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~~~~~~~wl~k 200 (202)
T d2h1ia1 134 -------GMQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLT-----MGEVEKAKEWYDK 200 (202)
T ss_dssp -------SCCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHHHHHHHHHHHH
T ss_pred -------cccccccccchhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHH
Confidence 0011223457899999999999999999999999999999999999996 89772 3557889999988
Q ss_pred h
Q 004067 775 T 775 (776)
Q Consensus 775 ~ 775 (776)
.
T Consensus 201 ~ 201 (202)
T d2h1ia1 201 A 201 (202)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.79 E-value=1.5e-18 Score=169.94 Aligned_cols=197 Identities=17% Similarity=0.093 Sum_probs=146.7
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchh
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 605 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~ 605 (776)
.+.+.-.++..-..-+|.|++ ++.|+|||+|||++...-.. .+..++..|+++||+|+++|||..+....
T Consensus 39 ~~dv~Yg~~~~~~lDiy~P~~-----~~~P~vv~iHGG~w~~g~~~----~~~~~a~~l~~~G~~Vv~~~YRl~p~~~~- 108 (261)
T d2pbla1 39 RLNLSYGEGDRHKFDLFLPEG-----TPVGLFVFVHGGYWMAFDKS----SWSHLAVGALSKGWAVAMPSYELCPEVRI- 108 (261)
T ss_dssp EEEEESSSSTTCEEEEECCSS-----SCSEEEEEECCSTTTSCCGG----GCGGGGHHHHHTTEEEEEECCCCTTTSCH-
T ss_pred cCCcCCCCCcCeEEEEeccCC-----CCCCeEEEECCCCCccCChh----HhhhHHHHHhcCCceeecccccccccccC-
Confidence 344554444334556788876 46799999999875432111 23456889999999999999997654321
Q ss_pred hhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC------CceEEEEEcCCCCCccccc
Q 004067 606 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP------DVFQCAVSGAPVTSWDGYD 679 (776)
Q Consensus 606 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~------~~~~~~v~~~~~~~~~~~~ 679 (776)
. ..++|+.++++++.++. +++|+|+|||+||+++++++.... ..+++++.++|+.++....
T Consensus 109 -p---------~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (261)
T d2pbla1 109 -S---------EITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLL 175 (261)
T ss_dssp -H---------HHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGG
T ss_pred -c---------hhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhh
Confidence 1 12789999999999874 379999999999999988876532 3478999999998876543
Q ss_pred ccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCC
Q 004067 680 TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753 (776)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H 753 (776)
..+...+++. ..+.+...+|+.++.+..+|+|++||++|..++..++.+++++++ ++.+++++++|
T Consensus 176 ~~~~~~~~~~---~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~~~qs~~~~~~l~-----~~~~~~~~~~H 241 (261)
T d2pbla1 176 RTSMNEKFKM---DADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHH 241 (261)
T ss_dssp GSTTHHHHCC---CHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCT
T ss_pred hhhhcccccC---CHHHHHHhCchhhcccCCCeEEEEEecCCCchHHHHHHHHHHHhC-----CCceEeCCCCc
Confidence 3332222222 345567789999999999999999999999998999999999883 47888999999
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.5e-19 Score=182.50 Aligned_cols=223 Identities=11% Similarity=0.044 Sum_probs=149.9
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.....+++.||.++++..+. ..|+||++||.+++.. .|..++..|+++||.|+++|+||+|.+.
T Consensus 11 ~~~~~v~~~~g~~i~y~~~G---------~gp~vlllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~G~G~S~ 74 (322)
T d1zd3a2 11 MSHGYVTVKPRVRLHFVELG---------SGPAVCLCHGFPESWY-------SWRYQIPALAQAGYRVLAMDMKGYGESS 74 (322)
T ss_dssp SEEEEEEEETTEEEEEEEEC---------CSSEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEEECTTSTTSC
T ss_pred CceeEEEECCCCEEEEEEEc---------CCCeEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEeccccccccc
Confidence 44455677789999988663 1278999999877654 3455688899999999999999999875
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc------
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------ 677 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~------ 677 (776)
...... .+..+++...+..++++. +.+++.++||||||.+++.+|.++|++++++++.++......
T Consensus 75 ~~~~~~------~~~~~~~~~~i~~l~~~l--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 146 (322)
T d1zd3a2 75 APPEIE------EYCMEVLCKEMVTFLDKL--GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPL 146 (322)
T ss_dssp CCSCGG------GGSHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCCSSSCHH
T ss_pred cccccc------cccccccchhhhhhhhcc--cccccccccccchHHHHHHHHHhCCccccceEEEcccccccccccchh
Confidence 432111 123556666666565542 456899999999999999999999999999998764221000
Q ss_pred --------------------------------ccccc---ccccc-------------CCCCC-------Cc---c----
Q 004067 678 --------------------------------YDTFY---TEKYM-------------GLPSE-------DP---V---- 695 (776)
Q Consensus 678 --------------------------------~~~~~---~~~~~-------------~~~~~-------~~---~---- 695 (776)
+...+ .+... ..... .. .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (322)
T d1zd3a2 147 ESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQ 226 (322)
T ss_dssp HHHHTCGGGHHHHHTTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHH
T ss_pred hhhhccchhhhHHhhhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHHHHHHHH
Confidence 00000 00000 00000 00 0
Q ss_pred chh------------------cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCC
Q 004067 696 GYE------------------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR 757 (776)
Q Consensus 696 ~~~------------------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 757 (776)
.+. .........++++|+|+++|++|..++++....+.+. -.+.++++++++||.. .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~----~~~~~~~~i~~~gH~~-~ 301 (322)
T d1zd3a2 227 QFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDW----IPHLKRGHIEDCGHWT-Q 301 (322)
T ss_dssp HHHHHTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGT----CTTCEEEEETTCCSCH-H
T ss_pred HHhhcccccccccccccccccccchhhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHh----CCCCEEEEECCCCCch-H
Confidence 000 0011122357789999999999999998877665543 3578899999999976 5
Q ss_pred CCcHHHHHHHHHHHHHHh
Q 004067 758 HRDRIYMEERIWEFIERT 775 (776)
Q Consensus 758 ~~~~~~~~~~~~~fl~~~ 775 (776)
.+.++++.+.+.+||+++
T Consensus 302 ~e~p~~v~~~i~~FL~~~ 319 (322)
T d1zd3a2 302 MDKPTEVNQILIKWLDSD 319 (322)
T ss_dssp HHSHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHhhc
Confidence 677889999999999876
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.79 E-value=8.6e-19 Score=174.56 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=146.6
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 531 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 531 ~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
+.+|..+++..+. ..|+||++||.+++...... |...+..|+ .||.|+++|+||+|.|.....
T Consensus 9 ~~~G~~~~Y~~~G---------~G~pvvllHG~~~~~~~~~~----~~~~~~~l~-~~~~vi~~Dl~G~G~S~~~~~--- 71 (271)
T d1uk8a_ 9 LAAGVLTNYHDVG---------EGQPVILIHGSGPGVSAYAN----WRLTIPALS-KFYRVIAPDMVGFGFTDRPEN--- 71 (271)
T ss_dssp EETTEEEEEEEEC---------CSSEEEEECCCSTTCCHHHH----HTTTHHHHT-TTSEEEEECCTTSTTSCCCTT---
T ss_pred EECCEEEEEEEEe---------eCCeEEEECCCCCCccHHHH----HHHHHHHHh-CCCEEEEEeCCCCCCcccccc---
Confidence 4489999988663 11567889997654332122 233355554 599999999999998864321
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-----------
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------- 679 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~----------- 679 (776)
.....++....+..+.+.. +.+++.++||||||.+++.++.++|+.+.++++..+........
T Consensus 72 ----~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~ 145 (271)
T d1uk8a_ 72 ----YNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTP 145 (271)
T ss_dssp ----CCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCS
T ss_pred ----ccccccccchhhhhhhhhh--cCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccc
Confidence 1223566777777776654 44689999999999999999999999999999877654211000
Q ss_pred ------cc-----cccc----------------------ccCC-CCCCccc-hhcCChhhhhccCCCcEEEEecCCCCcc
Q 004067 680 ------TF-----YTEK----------------------YMGL-PSEDPVG-YEYSSVMHHVHKMKGKLLLVHGMIDENV 724 (776)
Q Consensus 680 ------~~-----~~~~----------------------~~~~-~~~~~~~-~~~~~~~~~~~~i~~P~lii~G~~D~~v 724 (776)
.. +... +... +...... .........+.++++|+|+++|++|..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 225 (271)
T d1uk8a_ 146 SIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVV 225 (271)
T ss_dssp CHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSS
T ss_pred hhHHHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEecCCCCCc
Confidence 00 0000 0000 0000000 0111233457788999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 725 HFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 725 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
|+..+..+.+.+ .++++++++++||.+ ..+.++++.+.+.+||++
T Consensus 226 ~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 226 PLSSSLRLGELI----DRAQLHVFGRCGHWT-QIEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp CHHHHHHHHHHC----TTEEEEEESSCCSCH-HHHTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhC----CCCEEEEECCCCCch-HHHCHHHHHHHHHHHHhc
Confidence 998888877765 568999999999976 567789999999999986
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.79 E-value=1.8e-18 Score=181.78 Aligned_cols=239 Identities=15% Similarity=0.189 Sum_probs=171.9
Q ss_pred ceEEEEEcC-----CCc--EEEEEEEcCCCCCCCCCCceEEEEEcCCCCc-c----------------------------
Q 004067 524 PDIVQIQAN-----DGT--VLYGALYKPDESRYGPPPYKTLISVYGGPCV-Q---------------------------- 567 (776)
Q Consensus 524 ~~~~~~~~~-----dg~--~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~-~---------------------------- 567 (776)
.|.+.++++ ||+ .|++.||+|+.. .|.|+|+..+-.... .
T Consensus 23 re~v~v~~~~dt~rDG~~d~l~~di~rP~~~----~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T d1lnsa3 23 REVLWVESPVDSEQRGENDLIKIQIIRPKST----EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQK 98 (405)
T ss_dssp EEEEEEECSCCTTCSSSCCEEEEEEEECCCS----SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCC
T ss_pred EeEEEEeCCCCCCCCCCEeEEEEEEEccCCC----CCceEEEEeCCcCCCCccccccccccccccccccccccccccccc
Confidence 356666654 788 699999999874 589999976653110 0
Q ss_pred --------------------cccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHH
Q 004067 568 --------------------LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 627 (776)
Q Consensus 568 --------------------~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~ 627 (776)
.....| .....++|+++||+|+.+|.||+|+|+..+.. ++..+.+|..++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~-----~~~~e~~D~~~~Ie 170 (405)
T d1lnsa3 99 LPQKLSAKAKELPIVDKAPYRFTHGW---TYSLNDYFLTRGFASIYVAGVGTRSSDGFQTS-----GDYQQIYSMTAVID 170 (405)
T ss_dssp CCCCCCCCCCCCCEESSCSCBCCCCC---CCHHHHHHHTTTCEEEEECCTTSTTSCSCCCT-----TSHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccc---cccchHHHHhCCCEEEEECCCCCCCCCCcccc-----CChhhhhhHHHHHH
Confidence 000011 11235789999999999999999999876532 23346789999999
Q ss_pred HHHHcCCC--------------CCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc---------cccc-
Q 004067 628 WLIKQGLA--------------KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---------TFYT- 683 (776)
Q Consensus 628 ~l~~~~~i--------------d~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~---------~~~~- 683 (776)
|+.++... ...||+++|+||||++++.+|+..|..++|++...++.++.... ..+.
T Consensus 171 Wl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~ 250 (405)
T d1lnsa3 171 WLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPG 250 (405)
T ss_dssp HHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTT
T ss_pred HHHhcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhh
Confidence 99875321 34589999999999999999999999999999999988752100 0000
Q ss_pred -----------------------------------ccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHH
Q 004067 684 -----------------------------------EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 684 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 728 (776)
.............|...++..++.+|++|+|+++|..|..+++.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~~~~ 330 (405)
T d1lnsa3 251 EDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQ 330 (405)
T ss_dssp CCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHH
T ss_pred hhhhhhhccccccccccchhhhchhhhhhccchhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCCHHH
Confidence 000011122335567778889999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 729 TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 729 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+.+++++++ .+.+.++++.|+ +|.........++.+.+++||+++|
T Consensus 331 ~~~~y~al~-~~~~~~Lilgpw-~H~~~~~~~~~d~~~~~~~wFD~~L 376 (405)
T d1lnsa3 331 AYNFWKALP-EGHAKHAFLHRG-AHIYMNSWQSIDFSETINAYFVAKL 376 (405)
T ss_dssp HHHHHHHSC-TTCCEEEEEESC-SSCCCTTBSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCcEEEEeCC-CCCCCcccccchHHHHHHHHHHHHh
Confidence 999999885 356778888775 8865333334556788899999886
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.79 E-value=1.8e-18 Score=171.89 Aligned_cols=217 Identities=12% Similarity=0.023 Sum_probs=142.8
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
++ .||.++++.... ..|.||++||.++....... |...+..| +.||.|+++|+||+|.|.....
T Consensus 7 ~~-~dg~~l~y~~~G---------~g~~vvllHG~~~~~~~~~~----~~~~~~~l-~~~~~v~~~D~~G~G~S~~~~~- 70 (268)
T d1j1ia_ 7 VN-AGGVETRYLEAG---------KGQPVILIHGGGAGAESEGN----WRNVIPIL-ARHYRVIAMDMLGFGKTAKPDI- 70 (268)
T ss_dssp EE-ETTEEEEEEEEC---------CSSEEEEECCCSTTCCHHHH----HTTTHHHH-TTTSEEEEECCTTSTTSCCCSS-
T ss_pred EE-ECCEEEEEEEEc---------CCCeEEEECCCCCCccHHHH----HHHHHHHH-hcCCEEEEEcccccccccCCcc-
Confidence 44 489999887543 11568899997654322112 33345566 4589999999999998864221
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc-------
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF------- 681 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~------- 681 (776)
....+++...+..+++...++ .++.++||||||.+++.+|.++|++++++|+.+|..........
T Consensus 71 -------~~~~~~~~~~~~~~i~~l~~~-~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~ 142 (268)
T d1j1ia_ 71 -------EYTQDRRIRHLHDFIKAMNFD-GKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINY 142 (268)
T ss_dssp -------CCCHHHHHHHHHHHHHHSCCS-SCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------C
T ss_pred -------ccccccccccchhhHHHhhhc-ccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhh
Confidence 122445555555554443222 57899999999999999999999999999988765321100000
Q ss_pred -c--------cccccCCCCCCc----------------------------cchhcCChhhhhccCCCcEEEEecCCCCcc
Q 004067 682 -Y--------TEKYMGLPSEDP----------------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENV 724 (776)
Q Consensus 682 -~--------~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v 724 (776)
+ ............ ...........+.++++|+|+++|++|..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~ 222 (268)
T d1j1ia_ 143 DFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVV 222 (268)
T ss_dssp CSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSS
T ss_pred hhhhhhhHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEeCCCCCC
Confidence 0 000000000000 000111223456788999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 725 HFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 725 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++.+..+.+.+ .++++++++++||.+ ..++++++.+.+.+||.+
T Consensus 223 ~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 223 PVETAYKFLDLI----DDSWGYIIPHCGHWA-MIEHPEDFANATLSFLSL 267 (268)
T ss_dssp CHHHHHHHHHHC----TTEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC----CCCEEEEECCCCCch-HHhCHHHHHHHHHHHHcC
Confidence 998888777765 568999999999976 556788999999999976
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.79 E-value=1e-18 Score=177.94 Aligned_cols=218 Identities=15% Similarity=0.102 Sum_probs=146.1
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.+|.++++.-+.+.+ ..|+||++||.+++.. .|...+..|++.||.|+++|+||+|.|......
T Consensus 31 ~~g~~~~y~~~G~~~------~~p~llllHG~~~~~~-------~~~~~~~~l~~~~~~vi~~Dl~G~G~S~~~~~~--- 94 (310)
T d1b6ga_ 31 YPGLRAHYLDEGNSD------AEDVFLCLHGEPTWSY-------LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDE--- 94 (310)
T ss_dssp CTTCEEEEEEEECTT------CSCEEEECCCTTCCGG-------GGTTTHHHHHHTTCEEEEECCTTSTTSCEESCG---
T ss_pred CCCEEEEEEEecCCC------CCCEEEEECCCCCchH-------HHHHHHHHhhccCceEEEeeecCcccccccccc---
Confidence 488999988877654 3489999999877654 344457889999999999999999998643111
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-----ccc-----
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-----DTF----- 681 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-----~~~----- 681 (776)
..+..+++.+.+..++++. +.+++.|+||||||.+++.+|.++|++++++|++++....... ...
T Consensus 95 ---~~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 169 (310)
T d1b6ga_ 95 ---EDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPA 169 (310)
T ss_dssp ---GGCCHHHHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSST
T ss_pred ---ccccccccccchhhhhhhc--cccccccccceecccccccchhhhccccceEEEEcCccCCCcccchhHHHHhhcch
Confidence 1123566666666666543 3468999999999999999999999999999988664321100 000
Q ss_pred ----------------cccccc--CCCCCCc---cchh--------------------cCC----------hhhhhccCC
Q 004067 682 ----------------YTEKYM--GLPSEDP---VGYE--------------------YSS----------VMHHVHKMK 710 (776)
Q Consensus 682 ----------------~~~~~~--~~~~~~~---~~~~--------------------~~~----------~~~~~~~i~ 710 (776)
....+. ..+.... ..+. ... ......+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (310)
T d1b6ga_ 170 DGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWN 249 (310)
T ss_dssp TTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhhhhhHHhhcccC
Confidence 000000 0000000 0000 000 011235678
Q ss_pred CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 711 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+|+|+++|++|..+++.....+.+.+. ...++++++++||.+ ..+..+.+.+.+..||+.
T Consensus 250 ~P~l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~GH~~-~~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 250 GQTFMAIGMKDKLLGPDVMYPMKALIN---GCPEPLEIADAGHFV-QEFGEQVAREALKHFAET 309 (310)
T ss_dssp SEEEEEEETTCSSSSHHHHHHHHHHST---TCCCCEEETTCCSCG-GGGHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcC---CCccEEEECCCcCch-hhhCHHHHHHHHHHHHhC
Confidence 999999999999999888877776652 224678899999975 566778888888899874
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=4.7e-18 Score=170.15 Aligned_cols=253 Identities=14% Similarity=0.104 Sum_probs=164.1
Q ss_pred ceeCCC--CCEEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCC
Q 004067 175 PHLSSD--GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEI 252 (776)
Q Consensus 175 ~~~SpD--g~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 252 (776)
...||| |++|||+++++||++++++|+.++||..+.. ...++|||||++|+|.+...+..
T Consensus 4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~------------------~~~p~~SPDG~~iaf~~~~~~~~ 65 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGV------------------INNARFFPDGRKIAIRVMRGSSL 65 (281)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSE------------------EEEEEECTTSSEEEEEEEESTTC
T ss_pred cccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCc------------------ccCEEECCCCCEEEEEEeeCCCC
Confidence 456999 9999999999999999999999999886542 34688999999999987543221
Q ss_pred CeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 253 PRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
...+|++++..+++.++++...+. ..........+.|||||+.|++..
T Consensus 66 ------------------------------~~~~i~~~~~~~g~~~~lt~~~~~--~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 66 ------------------------------NTADLYFYNGENGEIKRITYFSGK--STGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp ------------------------------CEEEEEEEETTTTEEEECCCCCEE--EETTEECSEEEEECTTCCEEEEEC
T ss_pred ------------------------------CceEEEEEEecCCceEEeeecCCC--ccCccccccccccCCCCCEEEEEE
Confidence 125799999999999988543110 011123446789999999888875
Q ss_pred eec--CceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC---------CceEEEEEeCC
Q 004067 333 NRS--QTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT---------GFRHLYLHDIN 401 (776)
Q Consensus 333 ~~~--~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------g~~~l~~~~~~ 401 (776)
... .....++.++.+++..+........ +. + ..+++.+++..... +..........
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (281)
T d1k32a2 114 AMQPFSSMTCLYRVENDGINFVPLNLGPAT-HI-----L-------FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN 180 (281)
T ss_dssp TTSSSTTCCEEEEEEGGGTEEEECCSCSCS-EE-----E-------EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEE
T ss_pred ccCCCccceeeeeecCCCceeEEecCCccc-ee-----e-------ecCCCeEEEeeccccceeeeeccCCcceeeeecc
Confidence 443 2344677888877766544322111 10 1 11233344433221 11233333334
Q ss_pred CceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEE
Q 004067 402 GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVD 481 (776)
Q Consensus 402 g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 481 (776)
.+....++........+. ++. ..+++.....+. .+||.+++ +|. ..++||.........|||||++|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~--~~l~~~d~--~g~----~~~~lt~~~~~~~~~~SpDG~~I~f 249 (281)
T d1k32a2 181 SGAFKKIVDMSTHVSSPV-IVG--HRIYFITDIDGF--GQIYSTDL--DGK----DLRKHTSFTDYYPRHLNTDGRRILF 249 (281)
T ss_dssp TTEEEEEECCSSCCEEEE-EET--TEEEEEECTTSS--CEEEEEET--TSC----SCEECCCCCSSCEEEEEESSSCEEE
T ss_pred ccceeeccCCccccceee-eec--cccceecccccc--cceEEEeC--CCC----ceEEeecCCCcccccCcCCCCEEEE
Confidence 444455554433333333 444 456666655543 68999999 565 6788887665555689999999999
Q ss_pred EeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 482 FHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 482 ~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
... .+||++++.+++. ++|.
T Consensus 250 ~~~-----~~l~~~d~~~g~~-~~i~ 269 (281)
T d1k32a2 250 SKG-----GSIYIFNPDTEKI-EKIE 269 (281)
T ss_dssp EET-----TEEEEECTTTCCE-EECC
T ss_pred EeC-----CEEEEEECCCCCE-EEec
Confidence 764 4799999988874 4443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=3.2e-19 Score=185.60 Aligned_cols=279 Identities=12% Similarity=0.020 Sum_probs=176.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+..++|||||++|++.+..++ ..|++||.++++.+++..+.. .+..+.|||
T Consensus 44 ~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~~~~------------------------~v~~~~~sp- 95 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFEENLG------------------------NVFAMGVDR- 95 (360)
T ss_dssp CEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECCCCCC------------------------SEEEEEECT-
T ss_pred CEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEeeCCCc------------------------eEEeeeecc-
Confidence 3589999999999999987653 479999999999988876433 688999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----------CcEEEEecCCCcee
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----------CELHVLNLLINEQR 203 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----------~~l~~~~l~~g~~~ 203 (776)
||++|++. .++.+++|++++++.. .+..........++|||||++|+|... ..++++++.+++..
T Consensus 96 --dg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 172 (360)
T d1k32a3 96 --NGKFAVVANDRFEIMTVDLETGKPT-VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172 (360)
T ss_dssp --TSSEEEEEETTSEEEEEETTTCCEE-EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred --cccccceecccccccccccccccee-eeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence 99999987 6677999999999887 443333334778999999999999863 24899999999888
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
+++..... ...+.|||||+.|++.+.+.. ...+.. . .....+
T Consensus 173 ~~~~~~~~------------------~~~~~~spdg~~l~~~s~~~~-~~~~d~----~-------~~~~~~-------- 214 (360)
T d1k32a3 173 AATTENSH------------------DYAPAFDADSKNLYYLSYRSL-DPSPDR----V-------VLNFSF-------- 214 (360)
T ss_dssp ECSCSSSB------------------EEEEEECTTSCEEEEEESCCC-CCEECS----S-------SSCEEC--------
T ss_pred eecccccc------------------cccccccCCCCEEEEEeCCCc-eEcccc----c-------ccceee--------
Confidence 77654432 335789999999999874322 111100 0 000000
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEee-cCceEEEEEEECCCCceEEEEEeccCce
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR-SQTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
..+.+...+.. .......+.|+||++.+...... ......++.++..++..+.+....+...
T Consensus 215 --------~~~~~~~~~~~---------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (360)
T d1k32a3 215 --------EVVSKPFVIPL---------IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277 (360)
T ss_dssp --------CSCBEEEEEES---------STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred --------ccccceEEEec---------ccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCce
Confidence 01111112211 11122235688888754422211 1112346777778888777766543322
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
... +.. .+....+.........|++|++++++...++. .+..+ .|||||++|++.+..
T Consensus 278 ~~~---~~~-------~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~v~~~-~~SpDG~~l~~~~~D 335 (360)
T d1k32a3 278 IYS---VPV-------HGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN---NLTDL-RLSADRKTVMVRKDD 335 (360)
T ss_dssp EEE---CCC-------CCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE---EEEEE-EECTTSCEEEEEETT
T ss_pred EEE---EEe-------cCCCeeEEEecCCCCEEEEEECCCCeEEEecC---CcCEE-EECCCCCEEEEEECC
Confidence 111 000 01111112223334589999999887766653 34454 499999998776553
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.78 E-value=9.3e-19 Score=174.43 Aligned_cols=216 Identities=19% Similarity=0.202 Sum_probs=145.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
+|.+.||.++++..+. ..|.||++||.+++.. .|..++..|.++||.|+++|+||+|.|.....
T Consensus 2 ~f~~~dG~~i~y~~~G---------~g~pvvllHG~~~~~~-------~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~ 65 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDWG---------SGQPIVFSHGWPLNAD-------SWESQMIFLAAQGYRVIAHDRRGHGRSSQPWS 65 (273)
T ss_dssp EEECTTSCEEEEEEES---------CSSEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS
T ss_pred EEEeeCCcEEEEEEEC---------CCCeEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEechhcCccccccc
Confidence 5788999999988763 1145778999876644 34556788889999999999999998864211
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHH-HhhCCCceEEEEEcCCCCCccccc-------
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT-LARFPDVFQCAVSGAPVTSWDGYD------- 679 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~-a~~~~~~~~~~v~~~~~~~~~~~~------- 679 (776)
..+..++.+.+..+++.- +..+..++|||+||.+++.+ +..+|+++.++++.++........
T Consensus 66 --------~~~~~~~~~~~~~~l~~l--~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~ 135 (273)
T d1a8sa_ 66 --------GNDMDTYADDLAQLIEHL--DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGL 135 (273)
T ss_dssp --------CCSHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSB
T ss_pred --------cccccchHHHHHHHHHhc--CccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccc
Confidence 123555555555555543 34578899999988665555 555799999888876654311000
Q ss_pred ---------------------ccccccccC--CCCC--Cc----------------------cchhcCChhhhhccCCCc
Q 004067 680 ---------------------TFYTEKYMG--LPSE--DP----------------------VGYEYSSVMHHVHKMKGK 712 (776)
Q Consensus 680 ---------------------~~~~~~~~~--~~~~--~~----------------------~~~~~~~~~~~~~~i~~P 712 (776)
......+.. .+.. .. ..+...+....+.++++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P 215 (273)
T d1a8sa_ 136 PMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVP 215 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccc
Confidence 000000000 0000 00 001122334456788999
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+|+++|++|..+|.+....+.+.+ ..+++++++|++||.+ ..++++++.+.+.+||+
T Consensus 216 vlii~g~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 216 TLVVHGDADQVVPIEASGIASAAL---VKGSTLKIYSGAPHGL-TDTHKDQLNADLLAFIK 272 (273)
T ss_dssp EEEEEETTCSSSCSTTTHHHHHHH---STTCEEEEETTCCSCH-HHHTHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCCHHHHHHHHHHh---CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHcC
Confidence 999999999999988777776655 3567899999999976 55678899999999986
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.78 E-value=2.6e-18 Score=174.15 Aligned_cols=229 Identities=16% Similarity=0.088 Sum_probs=153.8
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHH-HhCCcEEEEECCCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGT 599 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l-~~~G~~v~~~d~rg~ 599 (776)
....+.++++.++| .+.+.+|.|+. +.|+||++|||+....-.. ....++..+ ++.|+.|+++|||..
T Consensus 53 ~~~~~~~~i~~~~g-~i~~~iy~P~~------~~P~il~iHGGg~~~g~~~----~~~~~~~~l~~~~g~~Vv~v~Yrla 121 (311)
T d1jjia_ 53 VERVEDRTIKGRNG-DIRVRVYQQKP------DSPVLVYYHGGGFVICSIE----SHDALCRRIARLSNSTVVSVDYRLA 121 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSS------SEEEEEEECCSTTTSCCTG----GGHHHHHHHHHHHTSEEEEEECCCT
T ss_pred cceEEEEEEeCCCC-cEEEEEEcCCC------CceEEEEEcCCCCccCChh----hhhhhhhhhhhcCCcEEEEeccccc
Confidence 34567788888777 69999999964 4599999999865432111 222334444 557999999999976
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh----CCCceEEEEEcCCC
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR----FPDVFQCAVSGAPV 672 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~----~~~~~~~~v~~~~~ 672 (776)
.+..- ...++|+..+++++.++ ..+|++||+|+|+|+||++++.++.. ......+.++..|.
T Consensus 122 p~~~~-----------p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~ 190 (311)
T d1jjia_ 122 PEHKF-----------PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPV 190 (311)
T ss_dssp TTSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCC
T ss_pred ccccc-----------chhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecce
Confidence 44321 12367888999988875 45789999999999999999887653 23456788888888
Q ss_pred CCcccccccccccccC----------------CCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHH
Q 004067 673 TSWDGYDTFYTEKYMG----------------LPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 736 (776)
Q Consensus 673 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l 736 (776)
.++...........-. .+..........+++....+-.+|+++++|+.|..+ .++..++++|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l~--d~~~~~~~~L 268 (311)
T d1jjia_ 191 VNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPLR--DEGEVFGQML 268 (311)
T ss_dssp CCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTTH--HHHHHHHHHH
T ss_pred eeeccCcccccccccccccccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCCh--HHHHHHHHHH
Confidence 7653221110000000 000000111123454443333479999999999654 4789999999
Q ss_pred HHCCCCeEEEEecCCCCCCCC----CCcHHHHHHHHHHHHH
Q 004067 737 VAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIE 773 (776)
Q Consensus 737 ~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~fl~ 773 (776)
+++|+++++++|++++|.|.. .....++.+.+.+||.
T Consensus 269 ~~~Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl~ 309 (311)
T d1jjia_ 269 RRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLV 309 (311)
T ss_dssp HHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHhC
Confidence 999999999999999998632 1234567778888873
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.78 E-value=1.2e-18 Score=173.30 Aligned_cols=217 Identities=21% Similarity=0.228 Sum_probs=145.2
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
+|.+.||.+|++..+.. .|+||++||.+++.. .|..+++.|+++||.|+++|+||+|.|.....
T Consensus 2 ~f~~~dG~~l~y~~~G~---------g~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~ 65 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDWGS---------GKPVLFSHGWLLDAD-------MWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWT 65 (271)
T ss_dssp EEECTTSCEEEEEEESS---------SSEEEEECCTTCCGG-------GGHHHHHHHHTTTCEEEEECCTTSTTSCCCSS
T ss_pred EEEeECCeEEEEEEEcC---------CCeEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 46778999998876641 145788999876643 34556788999999999999999998864321
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHH-HHhhCCCceEEEEEcCCCCCcccccc------
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI-TLARFPDVFQCAVSGAPVTSWDGYDT------ 680 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~-~a~~~~~~~~~~v~~~~~~~~~~~~~------ 680 (776)
....+++...+..+.... +.+++.++|||+||.+++. ++.++|+++..++...+.........
T Consensus 66 --------~~~~~~~~~~~~~~~~~~--~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~ 135 (271)
T d1va4a_ 66 --------GNDYDTFADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGV 135 (271)
T ss_dssp --------CCSHHHHHHHHHHHHHHH--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSB
T ss_pred --------ccccccccccceeeeeec--CCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhh
Confidence 123455555555554432 4468999999999876655 55667999999988776543110000
Q ss_pred ---------------------cccccccCC--CCC-C---------------c-------cchhcCChhhhhccCCCcEE
Q 004067 681 ---------------------FYTEKYMGL--PSE-D---------------P-------VGYEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 681 ---------------------~~~~~~~~~--~~~-~---------------~-------~~~~~~~~~~~~~~i~~P~l 714 (776)
.+...+... ... . . ..+...+....+.+++.|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl 215 (271)
T d1va4a_ 136 PLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTL 215 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEE
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhccccee
Confidence 000000000 000 0 0 01111233345678899999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++|++|..+++..+.++.+.+ ..+++++++|++||.. ..++++++.+.+.+||++
T Consensus 216 ~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 216 VIHGDGDQIVPFETTGKVAAEL---IKGAELKVYKDAPHGF-AVTHAQQLNEDLLAFLKR 271 (271)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTH-HHHTHHHHHHHHHHHHTC
T ss_pred ecccCCCCCCCHHHHHHHHHHh---CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHHCc
Confidence 9999999999998887776655 2467899999999976 456788999999999974
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.78 E-value=3.4e-18 Score=176.61 Aligned_cols=238 Identities=16% Similarity=0.095 Sum_probs=157.9
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+..++++.||..+.+.+|.|++.. .+.|+||++|||+....... + ..+...++.++++|+.|+++|||.....
T Consensus 78 ~~~~~~i~~~dg~~i~~~iy~P~~~~---~~~Pviv~~HGGG~~~gs~~-~-~~~~~~~~~la~~g~~VvsvdYRla~~~ 152 (358)
T d1jkma_ 78 ETSTETILGVDGNEITLHVFRPAGVE---GVLPGLVYTHGGGMTILTTD-N-RVHRRWCTDLAAAGSVVVMVDFRNAWTA 152 (358)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTCC---SCEEEEEEECCSTTTSSCSS-S-HHHHHHHHHHHHTTCEEEEEECCCSEET
T ss_pred cEEEEEEeCCCCCEEEEEEEecCCCC---CCCCeEEEecCCeeeecccc-c-cccchHHHHHHhhhheeeeeeecccccc
Confidence 46677888889999999999998743 57899999999865422111 1 1223457888999999999999976332
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhh-----CCCceEEEEEcCCCCCcc
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR-----FPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~-----~~~~~~~~v~~~~~~~~~ 676 (776)
... ......++|+.++++|+.++ ..++.++|+|+|+|.||.+++.++.. ....+.+.++..|+.+..
T Consensus 153 ~pe-------~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~ 225 (358)
T d1jkma_ 153 EGH-------HPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGG 225 (358)
T ss_dssp TEE-------CCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCC
T ss_pred ccc-------CCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceeccc
Confidence 111 01122488999999999876 23577899999999999999887753 234567788888876532
Q ss_pred ccccc-------------------------ccccccCCCC--CCccchhcCChhhhhccCCCcEEEEecCCCCccChHHH
Q 004067 677 GYDTF-------------------------YTEKYMGLPS--EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 729 (776)
Q Consensus 677 ~~~~~-------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 729 (776)
..... +...+..... .+...+........... -.|+||++|+.|.+. .++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~-lPp~li~~g~~D~l~--~e~ 302 (358)
T d1jkma_ 226 YAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRG-LPPFVVAVNELDPLR--DEG 302 (358)
T ss_dssp TTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTT-CCCEEEEEETTCTTH--HHH
T ss_pred cCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccC-CCCEEEEECCCCCCH--HHH
Confidence 11000 0001111110 01111111111111111 259999999999654 578
Q ss_pred HHHHHHHHHCCCCeEEEEecCCCCCCC---C---CCcHHHHHHHHHHHHHHh
Q 004067 730 ARLINALVAARKPYEILIFPDERHMPR---R---HRDRIYMEERIWEFIERT 775 (776)
Q Consensus 730 ~~~~~~l~~~~~~~~~~~~~~~~H~~~---~---~~~~~~~~~~~~~fl~~~ 775 (776)
..++++|+++|+++++++|++++|.|. . ++..++..+.+..|+..+
T Consensus 303 ~~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 303 IAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999751 1 133456778888888754
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.78 E-value=2.4e-18 Score=171.75 Aligned_cols=199 Identities=14% Similarity=0.141 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+||++||.+++.. .|..++..|+++||.|+++|+||+|.|..... ....+++.+.+..+++..
T Consensus 24 ~~ivllHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~--------~~~~~~~~~dl~~~l~~l- 87 (277)
T d1brta_ 24 QPVVLIHGFPLSGH-------SWERQSAALLDAGYRVITYDRRGFGQSSQPTT--------GYDYDTFAADLNTVLETL- 87 (277)
T ss_dssp SEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS--------CCSHHHHHHHHHHHHHHH-
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEeCCCCCccccccc--------ccchhhhhhhhhhhhhcc-
Confidence 56889999876644 34556778889999999999999998864221 123444544444444432
Q ss_pred CCCCcEEEEeechHH-HHHHHHHhhCCCceEEEEEcCCCCCccccc-----------------------------ccccc
Q 004067 635 AKVGHIGLYGWSYGG-YLSAITLARFPDVFQCAVSGAPVTSWDGYD-----------------------------TFYTE 684 (776)
Q Consensus 635 id~~~i~l~G~S~GG-~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-----------------------------~~~~~ 684 (776)
+.+++.++|||||| .++..++..+|++++++++.++........ ..+..
T Consensus 88 -~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (277)
T d1brta_ 88 -DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFND 166 (277)
T ss_dssp -TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -CcccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhcccc
Confidence 34689999999996 455566777899999999887654211000 00000
Q ss_pred cc-----cCCCCC--------------Cc------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHC
Q 004067 685 KY-----MGLPSE--------------DP------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 739 (776)
Q Consensus 685 ~~-----~~~~~~--------------~~------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 739 (776)
.+ ...... .. ......+....+.++++|+++++|++|..++++...+.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--- 243 (277)
T d1brta_ 167 FYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKA--- 243 (277)
T ss_dssp HTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHH---
T ss_pred ccccchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcCHHHHHHHHHHh---
Confidence 00 000000 00 000011222346778899999999999999987655544432
Q ss_pred CCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 740 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 740 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
..+.++++++++||.+ ..+.++++.+.+.+||++
T Consensus 244 ~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 244 LPSAEYVEVEGAPHGL-LWTHAEEVNTALLAFLAK 277 (277)
T ss_dssp CTTSEEEEETTCCTTH-HHHTHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHHCc
Confidence 3567999999999976 556788999999999975
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.78 E-value=2.5e-18 Score=168.95 Aligned_cols=201 Identities=15% Similarity=0.041 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.|||+||.+++.. .|..++..|+++||.|+++|+||+|.|...... .....+....+..+.....
T Consensus 3 ~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~vi~~Dl~G~G~S~~~~~~-------~~~~~~~~~~~~~~~~~~~ 68 (258)
T d1xkla_ 3 KHFVLVHGACHGGW-------SWYKLKPLLEAAGHKVTALDLAASGTDLRKIEE-------LRTLYDYTLPLMELMESLS 68 (258)
T ss_dssp CEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEECCCTTSTTCCCCGGG-------CCSHHHHHHHHHHHHHTSC
T ss_pred CcEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCC-------CcchHHHHHHHhhhhhccc
Confidence 57888999876644 355678899999999999999999998643211 1234555555555544432
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc---------------c--ccccccCCCC------
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT---------------F--YTEKYMGLPS------ 691 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~---------------~--~~~~~~~~~~------ 691 (776)
...++.++||||||.+++.++.++|+++..+++.++......... . ..........
T Consensus 69 -~~~~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T d1xkla_ 69 -ADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSM 147 (258)
T ss_dssp -SSSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEE
T ss_pred -ccccccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccc
Confidence 335889999999999999999999999999998876532110000 0 0000000000
Q ss_pred --------------C-----------------CccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 692 --------------E-----------------DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 692 --------------~-----------------~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
. ................++.|+++++|++|..+|++....+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~---- 223 (258)
T d1xkla_ 148 FFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNI---- 223 (258)
T ss_dssp ECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHH----
T ss_pred cccHHHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCCHHHHHHHHHHC----
Confidence 0 00001111222234556789999999999999998888888776
Q ss_pred CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 741 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.++++++++++||.. ..+.++++.+.|.+|++++
T Consensus 224 ~~~~~~~i~~~gH~~-~~e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 224 GVTEAIEIKGADHMA-MLCEPQKLCASLLEIAHKY 257 (258)
T ss_dssp CCSEEEEETTCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCch-HHhCHHHHHHHHHHHHHhc
Confidence 467899999999986 5678999999999999886
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.77 E-value=5e-19 Score=178.33 Aligned_cols=212 Identities=13% Similarity=0.054 Sum_probs=145.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|.++++..+.+++ .|+||++||.+++.. .|..++..|+ .||.|+++|+||+|.|....
T Consensus 15 ~g~~i~y~~~G~~~-------~p~lvllHG~~~~~~-------~~~~~~~~L~-~~~~vi~~d~~G~G~S~~~~------ 73 (291)
T d1bn7a_ 15 LGERMHYVDVGPRD-------GTPVLFLHGNPTSSY-------LWRNIIPHVA-PSHRCIAPDLIGMGKSDKPD------ 73 (291)
T ss_dssp TTEEEEEEEESCSS-------SSCEEEECCTTCCGG-------GGTTTHHHHT-TTSCEEEECCTTSTTSCCCS------
T ss_pred CCEEEEEEEeCCCC-------CCeEEEECCCCCCHH-------HHHHHHHHHh-cCCEEEEEeCCCCccccccc------
Confidence 78899999887644 267889999877644 2344567774 59999999999999886421
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc------------
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT------------ 680 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~------------ 680 (776)
.....+++.+.+..++++. +..++.++||||||.+++.++.++|+.++++++..+.........
T Consensus 74 --~~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (291)
T d1bn7a_ 74 --LDYFFDDHVRYLDAFIEAL--GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAF 149 (291)
T ss_dssp --CCCCHHHHHHHHHHHHHHT--TCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCHHHHHHHHHH
T ss_pred --cccchhHHHHHHhhhhhhh--ccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhhhhhhHHHHH
Confidence 1234566666666666653 446899999999999999999999999999988654432110000
Q ss_pred --------------ccc----ccccCCCCCC---------------cc-chh---c--------------CChhhhhccC
Q 004067 681 --------------FYT----EKYMGLPSED---------------PV-GYE---Y--------------SSVMHHVHKM 709 (776)
Q Consensus 681 --------------~~~----~~~~~~~~~~---------------~~-~~~---~--------------~~~~~~~~~i 709 (776)
.+. ......+... .. .+. . ......+.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (291)
T d1bn7a_ 150 RTADVGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQS 229 (291)
T ss_dssp TSTTHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHhhhhhhhhHHhhhhhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhcC
Confidence 000 0000000000 00 000 0 0011234678
Q ss_pred CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++|+|+++|++|..+++.....+.+.+ .++++++++++||.+ ..+.++++.+.+.+||+.
T Consensus 230 ~~P~lii~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 230 PVPKLLFWGTPGVLIPPAEAARLAESL----PNCKTVDIGPGLHYL-QEDNPDLIGSEIARWLPG 289 (291)
T ss_dssp CSCEEEEEEEECSSSCHHHHHHHHHHS----TTEEEEEEEEESSCG-GGTCHHHHHHHHHHHSGG
T ss_pred CCCEEEEEeCCCCCcCHHHHHHHHHHC----CCCEEEEECCCCCch-HHhCHHHHHHHHHHHHHh
Confidence 899999999999999998888877765 568999999999976 667788999999999864
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.77 E-value=7e-18 Score=171.96 Aligned_cols=129 Identities=18% Similarity=0.161 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+.+.-.+.+.||.++++..+..++ .|.||++||++++.. .| .. ...+...+|.|+++|+||+|.|
T Consensus 10 P~~~~~i~~~dg~~i~y~~~G~~~-------g~pvvllHG~~g~~~---~~----~~-~~~~l~~~~~Vi~~D~rG~G~S 74 (313)
T d1azwa_ 10 PYQQGSLKVDDRHTLYFEQCGNPH-------GKPVVMLHGGPGGGC---ND----KM-RRFHDPAKYRIVLFDQRGSGRS 74 (313)
T ss_dssp CSEEEEEECSSSCEEEEEEEECTT-------SEEEEEECSTTTTCC---CG----GG-GGGSCTTTEEEEEECCTTSTTS
T ss_pred CCCCCEEEeCCCcEEEEEEecCCC-------CCEEEEECCCCCCcc---ch----HH-HhHHhhcCCEEEEEeccccCCC
Confidence 457788888999999999886433 266788999876543 22 21 2334467999999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
..... ...+.+.++...+..++++. ..+++.|+||||||.+++.+|.++|++++++++.++...
T Consensus 75 ~~~~~------~~~~~~~~~~~dl~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 138 (313)
T d1azwa_ 75 TPHAD------LVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFLL 138 (313)
T ss_dssp BSTTC------CTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred Ccccc------ccchhHHHHHHHHHHHHHhh--ccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccccc
Confidence 64211 12234666777777776664 346899999999999999999999999999998877543
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.76 E-value=7.8e-18 Score=169.52 Aligned_cols=222 Identities=11% Similarity=0.000 Sum_probs=144.2
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+...++. +|.++++.... ..|+||++||.+++.. .|..++..|++ +|.|+++|+||+|.+.
T Consensus 8 ~~~~~~~~-~~~~l~y~~~G---------~gp~vv~lHG~~~~~~-------~~~~~~~~l~~-~~~vi~~D~~G~G~s~ 69 (293)
T d1ehya_ 8 FKHYEVQL-PDVKIHYVREG---------AGPTLLLLHGWPGFWW-------EWSKVIGPLAE-HYDVIVPDLRGFGDSE 69 (293)
T ss_dssp SCEEEEEC-SSCEEEEEEEE---------CSSEEEEECCSSCCGG-------GGHHHHHHHHT-TSEEEEECCTTSTTSC
T ss_pred CcceEEEE-CCEEEEEEEEC---------CCCeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEecCCcccCCc
Confidence 45667776 67788887653 1268899999876643 34556777755 8999999999999775
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-------
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD------- 676 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~------- 676 (776)
...... ......+++...+..+++.. +..++.++||||||.+++.++.++|+++.++++.+|.....
T Consensus 70 ~~~~~~----~~~~~~~~~a~~~~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 143 (293)
T d1ehya_ 70 KPDLND----LSKYSLDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGL 143 (293)
T ss_dssp CCCTTC----GGGGCHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-------
T ss_pred cccccc----cccccchhhhhHHHhhhhhc--CccccccccccccccchhcccccCccccceeeeeeccCccccchhhhh
Confidence 432111 11123556666666665543 44689999999999999999999999999999988753210
Q ss_pred -cc---------c---------------cccccccc----CCCC-CCcc--------------------chh-------c
Q 004067 677 -GY---------D---------------TFYTEKYM----GLPS-EDPV--------------------GYE-------Y 699 (776)
Q Consensus 677 -~~---------~---------------~~~~~~~~----~~~~-~~~~--------------------~~~-------~ 699 (776)
.. . ..+...++ .... .... .+. .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (293)
T d1ehya_ 144 GHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAA 223 (293)
T ss_dssp ----CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCC
T ss_pred hhhhhhhhhhhhccchhhhhhccchhHHHHHHHHhhhhcccccccccHHHHHhhhhccccchhhhhhhhhhhhccccchh
Confidence 00 0 00000000 0000 0000 000 0
Q ss_pred CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 700 SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 700 ~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.........++.|+|+++|+.|..+++....+..+.+ ..++++++++++||.+ ..+.++.+.+.|.+||+
T Consensus 224 ~~~~~~~~~~~~Pvlii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~-~~e~Pe~~~~~I~~Ffr 293 (293)
T d1ehya_ 224 LWTDLDHTMSDLPVTMIWGLGDTCVPYAPLIEFVPKY---YSNYTMETIEDCGHFL-MVEKPEIAIDRIKTAFR 293 (293)
T ss_dssp CCCTGGGSCBCSCEEEEEECCSSCCTTHHHHHHHHHH---BSSEEEEEETTCCSCH-HHHCHHHHHHHHHHHCC
T ss_pred hhhhhhhhccCCceEEEEeCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCch-HHHCHHHHHHHHHHhhC
Confidence 0000112346789999999999999988766655544 4678999999999976 66778888898988874
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.5e-18 Score=163.33 Aligned_cols=192 Identities=15% Similarity=0.005 Sum_probs=125.2
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC------Cchhhhhhhhhcc-CCcc---HHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR------RGLKFEASIKHNC-GRID---AED 621 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~------~~~~~~~~~~~~~-~~~~---~~D 621 (776)
+..++||++||.+++.. .+......+...++.+++++-+.... .+..|........ ...+ +.+
T Consensus 19 ~~~~~VI~lHG~G~~~~-------~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~ 91 (229)
T d1fj2a_ 19 KATAAVIFLHGLGDTGH-------GWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQ 91 (229)
T ss_dssp CCSEEEEEECCSSSCHH-------HHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHH-------HHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHH
Confidence 45578999999665432 22223444556789999988542110 0000100000000 0011 222
Q ss_pred HHHH----HHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccch
Q 004067 622 QLTG----AEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 697 (776)
Q Consensus 622 ~~~~----i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (776)
.... ++...+ ..++.+||+++|+|+||.+|+.++.++++.++++++.++....... +...+
T Consensus 92 ~~~~l~~li~~~~~-~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~-------~~~~~------- 156 (229)
T d1fj2a_ 92 AAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRAS-------FPQGP------- 156 (229)
T ss_dssp HHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGG-------SCSSC-------
T ss_pred HHHHHHHHhhhhhh-cCCCccceeeeecccchHHHHHHHHhhccccCcccccccccccccc-------ccccc-------
Confidence 2222 333322 3579999999999999999999999999999999998875421100 00000
Q ss_pred hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHC--CCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 698 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA--RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 698 ~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~--~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
....+.+.|+|++||.+|.+||++.++++++.|++. +.++++++|++++|.+. .+.+..+.+||+++
T Consensus 157 ------~~~~~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~wL~~~ 225 (229)
T d1fj2a_ 157 ------IGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQEMMDVKQFIDKL 225 (229)
T ss_dssp ------CCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHHHHHHHHHHHHH
T ss_pred ------cccccccCceeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HHHHHHHHHHHHhH
Confidence 011223579999999999999999999999999873 56899999999999762 34468899999998
Q ss_pred C
Q 004067 776 L 776 (776)
Q Consensus 776 l 776 (776)
|
T Consensus 226 L 226 (229)
T d1fj2a_ 226 L 226 (229)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.76 E-value=1.3e-18 Score=174.62 Aligned_cols=202 Identities=15% Similarity=0.151 Sum_probs=132.3
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+||++||.+.+.. .|...+.. ...+.+.||.|+++|+||+|.|....... ....+..+.+..++++.
T Consensus 31 ~~ivllHG~~~~~~---~~~~~~~~-l~~~~~~g~~v~~~D~~G~G~S~~~~~~~-------~~~~~~~~~i~~li~~l- 98 (283)
T d2rhwa1 31 ETVIMLHGGGPGAG---GWSNYYRN-VGPFVDAGYRVILKDSPGFNKSDAVVMDE-------QRGLVNARAVKGLMDAL- 98 (283)
T ss_dssp SEEEEECCCSTTCC---HHHHHTTT-HHHHHHTTCEEEEECCTTSTTSCCCCCSS-------CHHHHHHHHHHHHHHHH-
T ss_pred CeEEEECCCCCChh---HHHHHHHH-HHHHHHCCCEEEEEeCCCCcccccccccc-------cccchhhhhcccccccc-
Confidence 67889999766543 23222222 33466799999999999999885432211 11222223333333322
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-cc-----------c-----------ccccccCCCC
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-DT-----------F-----------YTEKYMGLPS 691 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-~~-----------~-----------~~~~~~~~~~ 691 (776)
+.+++.++||||||.+++.++.++|+.++++++.+|....... .. . ....+.....
T Consensus 99 -~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (283)
T d2rhwa1 99 -DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 177 (283)
T ss_dssp -TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGG
T ss_pred -cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhcccc
Confidence 3468999999999999999999999999999988764321000 00 0 0000000000
Q ss_pred -CC--------------c------------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 692 -ED--------------P------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 692 -~~--------------~------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
.. . ......+....+.++++|+|+++|.+|.++++..+..+.+.+ .+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~----~~~~ 253 (283)
T d2rhwa1 178 LITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI----DDAR 253 (283)
T ss_dssp GCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHS----SSEE
T ss_pred cCcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhC----CCCE
Confidence 00 0 001112334456788999999999999999999888887765 5689
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++++++||.+ ..+.++++.+.+.+||++
T Consensus 254 ~~~i~~~gH~~-~~e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 254 LHVFSKCGHWA-QWEHADEFNRLVIDFLRH 282 (283)
T ss_dssp EEEESSCCSCH-HHHTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCch-HHhCHHHHHHHHHHHHhC
Confidence 99999999976 556788999999999975
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.76 E-value=3.5e-18 Score=167.98 Aligned_cols=199 Identities=15% Similarity=-0.009 Sum_probs=134.1
Q ss_pred EEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCC
Q 004067 557 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAK 636 (776)
Q Consensus 557 vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id 636 (776)
.|++||.+++.. .|..++..|+++||.|+++|+||+|.|...... ....++..+.+..+..+.. .
T Consensus 5 ~vliHG~~~~~~-------~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~~-------~~~~~~~~~~l~~~~~~~~-~ 69 (256)
T d3c70a1 5 FVLIHTICHGAW-------IWHKLKPLLEALGHKVTALDLAASGVDPRQIEE-------IGSFDEYSEPLLTFLEALP-P 69 (256)
T ss_dssp EEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTTCSCCGGG-------CCSHHHHTHHHHHHHHHSC-T
T ss_pred EEEeCCCCCCHH-------HHHHHHHHHHhCCCEEEEEcCCCCCCCCCCCCC-------CCCHHHHHHHhhhhhhhhc-c
Confidence 478999876643 355678899999999999999999998643211 1235555555544433321 3
Q ss_pred CCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc--------------------cc-------c------
Q 004067 637 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT--------------------FY-------T------ 683 (776)
Q Consensus 637 ~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~--------------------~~-------~------ 683 (776)
.+++.++||||||.+++.++.++|++++++|+.++......... .+ .
T Consensus 70 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
T d3c70a1 70 GEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGF 149 (256)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHHGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCH
T ss_pred ccceeecccchHHHHHHHHhhcCchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhh
Confidence 46899999999999999999999999999998876532110000 00 0
Q ss_pred ----ccccCCCC---------------CCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 684 ----EKYMGLPS---------------EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 684 ----~~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
........ .................++.|+++++|++|..++++....+.+.+ .+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----p~~~ 225 (256)
T d3c70a1 150 TLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENY----KPDK 225 (256)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHS----CCSE
T ss_pred hhhhhhhhhhcchhhHHHhhhhhhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCCHHHHHHHHHHC----CCCE
Confidence 00000000 000001111122233445689999999999999988777776654 5678
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++++++||.. ..++++++.+.+.+|++++
T Consensus 226 ~~~i~~agH~~-~~e~P~~~~~~l~~~~~~~ 255 (256)
T d3c70a1 226 VYKVEGGDHKL-QLTKTKEIAEILQEVADTY 255 (256)
T ss_dssp EEECCSCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCch-HHhCHHHHHHHHHHHHHhc
Confidence 99999999986 6678999999999999875
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.75 E-value=4.4e-17 Score=160.32 Aligned_cols=207 Identities=11% Similarity=-0.019 Sum_probs=136.0
Q ss_pred CCceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhC----CcEEEEECC
Q 004067 522 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK----GILVWKLDN 596 (776)
Q Consensus 522 ~~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~----G~~v~~~d~ 596 (776)
.+.+.+++.++ +|.++++++|.|++.. ..+++|+|+++||+++..................+... .+.+...+.
T Consensus 20 g~~~~~~~~S~~~g~~~~~~v~lP~~y~-~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (255)
T d1jjfa_ 20 GQVVNISYFSTATNSTRPARVYLPPGYS-KDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNT 98 (255)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECTTCC-TTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECC
T ss_pred eEEEEEEEEecCCCCEEEEEEEeCCCCC-CCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeeccc
Confidence 45677888765 6899999999999863 34789999999997765432111111111122233322 244555544
Q ss_pred CCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc--CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 597 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ--GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 597 rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~--~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
............. . ....+.+.+.++.++ ..++.++++++|+||||++++.++.++|++|+++++++|..+
T Consensus 99 ~~~~~~~~~~~~~----~---~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~ 171 (255)
T d1jjfa_ 99 NAAGPGIADGYEN----F---TKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPN 171 (255)
T ss_dssp CCCCTTCSCHHHH----H---HHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTT
T ss_pred ccccccccccccc----h---HHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcC
Confidence 3222111111110 0 112233344455543 346889999999999999999999999999999999988765
Q ss_pred cccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 675 WDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
....... .............|+++.||+.|..++ ..+++++.|++++.++++.++++++|.
T Consensus 172 ~~~~~~~-----------------~~~~~~~~~~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~~~~~~~ggH~ 232 (255)
T d1jjfa_ 172 TYPNERL-----------------FPDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQGGGHD 232 (255)
T ss_dssp SCCHHHH-----------------CTTTTHHHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEETTCCSS
T ss_pred Ccccccc-----------------cccHHHHhhccCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEEEEEECCCCcC
Confidence 3211110 111223344555799999999998876 467899999999999999999999996
Q ss_pred C
Q 004067 755 P 755 (776)
Q Consensus 755 ~ 755 (776)
+
T Consensus 233 ~ 233 (255)
T d1jjfa_ 233 F 233 (255)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.75 E-value=2.1e-17 Score=167.69 Aligned_cols=233 Identities=20% Similarity=0.187 Sum_probs=151.8
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGT 599 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~ 599 (776)
....+.+.++. +|.++.+.+|.|++.. ++.|+||++|||+....... ....++..++. .++.|+.+|||..
T Consensus 43 ~~~~~~~~~~~-~g~~i~~~~y~P~~~~---~~~Pvvv~iHGGg~~~g~~~----~~~~~~~~~a~~~~~~v~~v~Yrl~ 114 (308)
T d1u4na_ 43 VAEVREFDMDL-PGRTLKVRMYRPEGVE---PPYPALVYYHGGGWVVGDLE----THDPVCRVLAKDGRAVVFSVDYRLA 114 (308)
T ss_dssp CSEEEEEEEEE-TTEEEEEEEEECTTCC---SSEEEEEEECCSTTTSCCTT----TTHHHHHHHHHHHTSEEEEECCCCT
T ss_pred CCcEEEEEEec-CCceEEEEEEeccccC---CCCCEEEEEecCeeeeeccc----cccchhhhhhhcccccccccccccc
Confidence 34466777776 7888999999998643 57999999999864432111 22334455554 4567889999965
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCC
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPV 672 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~ 672 (776)
..... ....+|+..+++++.++ ..+|++||+++|+|+||++++.++....+ .+.+..+..+.
T Consensus 115 p~~~~-----------p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~ 183 (308)
T d1u4na_ 115 PEHKF-----------PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPS 183 (308)
T ss_dssp TTSCT-----------THHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCC
T ss_pred ccccc-----------ccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccc
Confidence 43321 12367999999999875 35789999999999999999988865322 23455555555
Q ss_pred CCcccccccc-------------------cccccCCCCCCccchhcCChhhhhccC-CCcEEEEecCCCCccChHHHHHH
Q 004067 673 TSWDGYDTFY-------------------TEKYMGLPSEDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARL 732 (776)
Q Consensus 673 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~ 732 (776)
.+........ ...+.. ..........++....... ..|+|+++|+.|..+ .++..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l~--~~~~~~ 259 (308)
T d1u4na_ 184 TGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLN--SLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKLY 259 (308)
T ss_dssp CCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCS--SGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHHH
T ss_pred cccccccccchhhhccccccccchhhhhhhhcccC--ccccccchhhhhhhchhhcCCCCeeEEecCcCCch--HHHHHH
Confidence 4322110000 000000 0000001111111111111 258999999999654 578999
Q ss_pred HHHHHHCCCCeEEEEecCCCCCCCC----CCcHHHHHHHHHHHHHHhC
Q 004067 733 INALVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 733 ~~~l~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~fl~~~l 776 (776)
+++|++.|+++++++|++++|.|.. .....+.++.+.+||++.|
T Consensus 260 ~~~L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 260 AEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998632 2234678889999998865
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.75 E-value=1.7e-17 Score=173.31 Aligned_cols=248 Identities=16% Similarity=0.196 Sum_probs=164.3
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccc-----cccccccchhhhHHHHhCCcEEEEECCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV-----CDSWINTVDMRAQYLRSKGILVWKLDNR 597 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~-----~~~~~~~~~~~~~~l~~~G~~v~~~d~r 597 (776)
..+.+.++..||++|.+.+|+|++. +++|+||+.|+....... ...........++.|+++||+|+.+|.|
T Consensus 27 ~~~~v~ipmrDG~~L~~~v~~P~~~----~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~R 102 (385)
T d2b9va2 27 IKREVMVPMRDGVKLYTVIVIPKNA----RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIR 102 (385)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECT
T ss_pred eEeEEEEECCCCCEEEEEEEEcCCC----CceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEEcCC
Confidence 3567999999999999999999864 689999998863211000 0000011223467899999999999999
Q ss_pred CCCCCchhhhhh-----hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 598 GTARRGLKFEAS-----IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 598 g~g~~~~~~~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
|+|.|+..+... ....++..+.+|..++++|+.++..++.+||+++|+|+||++++.+|+..++.+++++...+.
T Consensus 103 G~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~~~~ 182 (385)
T d2b9va2 103 GKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPM 182 (385)
T ss_dssp TSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEEC
T ss_pred cccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEeccc
Confidence 999998765432 223344557899999999999997678899999999999999999999999999999988777
Q ss_pred CCccccccccc---------cc------cc--C--CCCC-------------------------------------Cccc
Q 004067 673 TSWDGYDTFYT---------EK------YM--G--LPSE-------------------------------------DPVG 696 (776)
Q Consensus 673 ~~~~~~~~~~~---------~~------~~--~--~~~~-------------------------------------~~~~ 696 (776)
.++......+. .. .. . .+.. ....
T Consensus 183 ~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~ 262 (385)
T d2b9va2 183 VDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAF 262 (385)
T ss_dssp CCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHH
T ss_pred ccccccccccCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhhccCcccchh
Confidence 66422110000 00 00 0 0000 0022
Q ss_pred hhcCChhhhh--ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC--CCeEEEEecCCCCCCCC-------------CC
Q 004067 697 YEYSSVMHHV--HKMKGKLLLVHGMIDENVHFRHTARLINALVAAR--KPYEILIFPDERHMPRR-------------HR 759 (776)
Q Consensus 697 ~~~~~~~~~~--~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~--~~~~~~~~~~~~H~~~~-------------~~ 759 (776)
+...++...+ .++..|+|++.|..|... ...+.+.++.++... .+..+++-|. +|.... ..
T Consensus 263 w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~-~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~~~g~~~~~~~~ 340 (385)
T d2b9va2 263 WQGQALDKILAQRKPTVPMLWEQGLWDQED-MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDT 340 (385)
T ss_dssp HHTTCHHHHHHHHCCCSCEEEEEETTCSSC-SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCH
T ss_pred hhhcChhHHHhhccccCceEEEEecccCCc-ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCcccccccccccccCccc
Confidence 2233333333 356679999999887654 345566777776654 4567777765 664211 11
Q ss_pred cHHHHHHHHHHHHHHhC
Q 004067 760 DRIYMEERIWEFIERTL 776 (776)
Q Consensus 760 ~~~~~~~~~~~fl~~~l 776 (776)
....+...+++||+++|
T Consensus 341 ~~~~~~~~~l~WFD~~L 357 (385)
T d2b9va2 341 AHQYRRDVFRPFFDEYL 357 (385)
T ss_dssp HHHHHHHTHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHc
Confidence 23345566789999886
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.74 E-value=7.2e-18 Score=168.51 Aligned_cols=198 Identities=14% Similarity=0.147 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+||++||.+++.. .|...+..+.+.||.|+++|+||+|.|..... ...++++...+..+++.-
T Consensus 24 ~~illlHG~~~~~~-------~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~--------~~~~~~~~~di~~~i~~l- 87 (279)
T d1hkha_ 24 QPVVLIHGYPLDGH-------SWERQTRELLAQGYRVITYDRRGFGGSSKVNT--------GYDYDTFAADLHTVLETL- 87 (279)
T ss_dssp EEEEEECCTTCCGG-------GGHHHHHHHHHTTEEEEEECCTTSTTSCCCSS--------CCSHHHHHHHHHHHHHHH-
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEechhhCCcccccc--------ccchhhhhhhhhhhhhhc-
Confidence 67899999876654 34555777888999999999999998864321 123455555444444432
Q ss_pred CCCCcEEEEeechHH-HHHHHHHhhCCCceEEEEEcCCCCCcccccc------------------------ccc---ccc
Q 004067 635 AKVGHIGLYGWSYGG-YLSAITLARFPDVFQCAVSGAPVTSWDGYDT------------------------FYT---EKY 686 (776)
Q Consensus 635 id~~~i~l~G~S~GG-~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~------------------------~~~---~~~ 686 (776)
+.+++.++|||||| .++..++..+|+++.++++.++......... .+. ..+
T Consensus 88 -~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (279)
T d1hkha_ 88 -DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNF 166 (279)
T ss_dssp -TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -CcCccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 44689999999996 5566667778999999998765432110000 000 000
Q ss_pred ------cCCCCC---------------Cccchh--------cCChhhhhccCCCcEEEEecCCCCccChHH-HHHHHHHH
Q 004067 687 ------MGLPSE---------------DPVGYE--------YSSVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINAL 736 (776)
Q Consensus 687 ------~~~~~~---------------~~~~~~--------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l 736 (776)
...... ....+. ....+..+.++++|+|+++|++|..++... .+.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~- 245 (279)
T d1hkha_ 167 YNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQA- 245 (279)
T ss_dssp HTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHH-
T ss_pred cccchhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccCHHHHHHHHHHh-
Confidence 000000 000000 001123345678999999999999998754 3444443
Q ss_pred HHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 737 VAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 737 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
-.++++++++++||.+ ..+.++++.+.+.+||++
T Consensus 246 ---~p~~~~~~i~~~gH~~-~~e~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 246 ---VPEADYVEVEGAPHGL-LWTHADEVNAALKTFLAK 279 (279)
T ss_dssp ---CTTSEEEEETTCCTTH-HHHTHHHHHHHHHHHHHC
T ss_pred ---CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHHCc
Confidence 2567899999999976 556788999999999975
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1e-15 Score=157.47 Aligned_cols=277 Identities=12% Similarity=-0.005 Sum_probs=186.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++|||||++||--+ + ..|.+||+..+.... +..... ..+...+....|+|
T Consensus 54 V~~v~fs~~g~~latg~--d----g~V~iWd~~~~~~~~~~~~~~~-------------------~~h~~~I~~v~~s~- 107 (337)
T d1gxra_ 54 VCAVTISNPTRHVYTGG--K----GCVKVWDISHPGNKSPVSQLDC-------------------LNRDNYIRSCKLLP- 107 (337)
T ss_dssp CCEEEECSSSSEEEEEC--B----SEEEEEETTSTTCCSCSEEEEC-------------------SCTTSBEEEEEECT-
T ss_pred EEEEEECCCCCEEEEEE--C----CEEEEEEccCCcccceeEEeee-------------------cCCCCcEEEEEEcC-
Confidence 58899999999998532 2 369999998654321 110000 00123588999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCC
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
||+.|+.. .++.|.+||+.....+ ..+..... .+....|+||+..++.... ..+.++++.+++..........
T Consensus 108 --dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~ 184 (337)
T d1gxra_ 108 --DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp --TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred --CCCEEEEeecccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 99999876 7889999999866543 13333222 3667889999999988775 4799999998876554432221
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
.+..+.|+|+++.++....+ ..+.+||
T Consensus 185 -----------------~v~~l~~s~~~~~~~~~~~d------------------------------------~~v~i~d 211 (337)
T d1gxra_ 185 -----------------GASCIDISNDGTKLWTGGLD------------------------------------NTVRSWD 211 (337)
T ss_dssp -----------------CEEEEEECTTSSEEEEEETT------------------------------------SEEEEEE
T ss_pred -----------------cccccccccccccccccccc------------------------------------ccccccc
Confidence 14467899999998886643 3578999
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccccccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTP 371 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 371 (776)
+.+++.... ......+..++|+|+++.++... .+..|.+||+++++......+....... .|+|
T Consensus 212 ~~~~~~~~~---------~~~~~~i~~l~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~i~~v---~~s~ 275 (337)
T d1gxra_ 212 LREGRQLQQ---------HDFTSQIFSLGYCPTGEWLAVGM----ESSNVEVLHVNKPDKYQLHLHESCVLSL---KFAY 275 (337)
T ss_dssp TTTTEEEEE---------EECSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTSSCEEEECCCSSCEEEE---EECT
T ss_pred cccceeecc---------cccccceEEEEEcccccccceec----cccccccccccccccccccccccccceE---EECC
Confidence 988875443 23445688899999999877665 3446899999988876554443332211 2333
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
++.++++...+| .|++|+...++......+...+.... |++||++|+. ++.++. +.+|++
T Consensus 276 --------~g~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~v~~~~-~s~d~~~l~t-~s~D~~--I~vWdl 335 (337)
T d1gxra_ 276 --------CGKWFVSTGKDN--LLNAWRTPYGASIFQSKESSSVLSCD-ISVDDKYIVT-GSGDKK--ATVYEV 335 (337)
T ss_dssp --------TSSEEEEEETTS--EEEEEETTTCCEEEEEECSSCEEEEE-ECTTSCEEEE-EETTSC--EEEEEE
T ss_pred --------CCCEEEEEeCCC--eEEEEECCCCCEEEEccCCCCEEEEE-EeCCCCEEEE-EeCCCe--EEEEEE
Confidence 234556665666 89999988776655555556666654 9999997654 444443 788876
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=1.6e-17 Score=164.61 Aligned_cols=192 Identities=15% Similarity=0.106 Sum_probs=127.6
Q ss_pred CCceEEEEEcCCCCccccc--ccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVC--DSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 629 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~--~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l 629 (776)
++.|+||++|||+...... ..|......++..+++.||.|+++|||.++...- ...++|+.++++++
T Consensus 29 ~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~~-----------~~~~~d~~~~~~~l 97 (263)
T d1vkha_ 29 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITN-----------PRNLYDAVSNITRL 97 (263)
T ss_dssp TCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCT-----------THHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchhh-----------hHHHHhhhhhhhcc
Confidence 4669999999975432111 1111111223455668899999999997654321 12378999999999
Q ss_pred HHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-----------------ceEEEEEcCCCCCccccccc------ccccc
Q 004067 630 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----------------VFQCAVSGAPVTSWDGYDTF------YTEKY 686 (776)
Q Consensus 630 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-----------------~~~~~v~~~~~~~~~~~~~~------~~~~~ 686 (776)
.++. +..+|+|+|||+||.+++.++...++ ...+.+...+..++...... +....
T Consensus 98 ~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (263)
T d1vkha_ 98 VKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLA 175 (263)
T ss_dssp HHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHHHH
T ss_pred cccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhhcc
Confidence 8875 56799999999999999998875432 24566666666554322111 11111
Q ss_pred cC-CCCCCccc--hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC
Q 004067 687 MG-LPSEDPVG--YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 756 (776)
Q Consensus 687 ~~-~~~~~~~~--~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 756 (776)
+. .+...... .........+.++..|+|++||++|+++|+.++.+++++|++.+++++++++++++|...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~~~~H~~~ 248 (263)
T d1vkha_ 176 FPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDV 248 (263)
T ss_dssp CTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGGG
T ss_pred cccccccccccccccCccccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEECCCCchhh
Confidence 11 11100000 000011233556789999999999999999999999999999999999999999999753
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.74 E-value=3e-17 Score=166.42 Aligned_cols=223 Identities=18% Similarity=0.142 Sum_probs=142.9
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+...+++.||.+|++..+.+++ .|.||++||++++.. .| ......+ ..||.|+++|+||+|.
T Consensus 9 ~p~~~~~v~~~dG~~i~y~~~G~~~-------g~pvvllHG~~~~~~---~w----~~~~~~l-~~~~~vi~~D~rG~G~ 73 (313)
T d1wm1a_ 9 AAYDSGWLDTGDGHRIYWELSGNPN-------GKPAVFIHGGPGGGI---SP----HHRQLFD-PERYKVLLFDQRGCGR 73 (313)
T ss_dssp CCSEEEEEECSSSCEEEEEEEECTT-------SEEEEEECCTTTCCC---CG----GGGGGSC-TTTEEEEEECCTTSTT
T ss_pred CCCcCCEEEeCCCcEEEEEEecCCC-------CCeEEEECCCCCccc---ch----HHHHHHh-hcCCEEEEEeCCCccc
Confidence 3456677888899999999887643 267888999877644 33 3333333 5699999999999998
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc---
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--- 678 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~--- 678 (776)
|...... ......++...+..+..+. ...++.++|||+||.+++.++..+|+++...+...+.......
T Consensus 74 S~~~~~~------~~~~~~~~~~d~~~~~~~~--~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~~~~~~~~ 145 (313)
T d1wm1a_ 74 SRPHASL------DNNTTWHLVADIERLREMA--GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHW 145 (313)
T ss_dssp CBSTTCC------TTCSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHH
T ss_pred ccccccc------cccchhhHHHHHHhhhhcc--CCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccccccccccc
Confidence 8643211 1223455555555555553 4568999999999999999999999999998887654321000
Q ss_pred -----------------ccc------------------------cc---------c-cccC-CCCCCccch---------
Q 004067 679 -----------------DTF------------------------YT---------E-KYMG-LPSEDPVGY--------- 697 (776)
Q Consensus 679 -----------------~~~------------------------~~---------~-~~~~-~~~~~~~~~--------- 697 (776)
... .. . .... .+......+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (313)
T d1wm1a_ 146 YYQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAF 225 (313)
T ss_dssp HHTSSGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhHHhhh
Confidence 000 00 0 0000 000000000
Q ss_pred -------------hcC---ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH
Q 004067 698 -------------EYS---SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 761 (776)
Q Consensus 698 -------------~~~---~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 761 (776)
... ........+++|+|+++|++|.++|+..++.+.+.+ .++++++++++||....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~p~~~~~~l~~~~----p~a~~~~i~~aGH~~~e---- 297 (313)
T d1wm1a_ 226 ARIENHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAW----PEAELHIVEGAGHSYDE---- 297 (313)
T ss_dssp HHHHHHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHC----TTSEEEEETTCCSSTTS----
T ss_pred hhhhhhhhhhhcccccchhhhhhhhhhCCCCEEEEEECCCCccCHHHHHHHHHHC----CCCEEEEECCCCCCcCC----
Confidence 000 011123446789999999999999999988887776 56799999999996522
Q ss_pred HHHHHHHHHHHHHh
Q 004067 762 IYMEERIWEFIERT 775 (776)
Q Consensus 762 ~~~~~~~~~fl~~~ 775 (776)
.+..+.+++.+++.
T Consensus 298 P~~~~~lv~a~~~f 311 (313)
T d1wm1a_ 298 PGILHQLMIATDRF 311 (313)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHh
Confidence 34445566666553
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.74 E-value=1.2e-17 Score=158.67 Aligned_cols=192 Identities=14% Similarity=0.108 Sum_probs=131.2
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh-hh---
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI-KH--- 612 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~-~~--- 612 (776)
+++.+..+.. +++|+||++||.+++.. .+..+++.++. ++.+++++.+.....+..+.... ..
T Consensus 11 ~~~~~~~~~~-----~~~p~vv~lHG~g~~~~-------~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
T d3b5ea1 11 FPYRLLGAGK-----ESRECLFLLHGSGVDET-------TLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFE 77 (209)
T ss_dssp SCEEEESTTS-----SCCCEEEEECCTTBCTT-------TTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEEC
T ss_pred ceeEecCCCC-----CCCCEEEEEcCCCCCHH-------HHHHHHHHhcc-CcEEEeeccCcCcccCccccccCCccccc
Confidence 4555555433 46799999999776532 23344566654 68888887642111110000000 00
Q ss_pred -ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCC
Q 004067 613 -NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 691 (776)
Q Consensus 613 -~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (776)
........++.+.++.+.++..+|.+||+|+|+||||++++.++.++|++|+++++.+|..... +.
T Consensus 78 ~~~~~~~~~~l~~~l~~~~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~-------------~~ 144 (209)
T d3b5ea1 78 QKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD-------------HV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS-------------SC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc-------------cc
Confidence 0001124556667777777777899999999999999999999999999999999988864311 00
Q ss_pred CCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHH
Q 004067 692 EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 771 (776)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f 771 (776)
......+.|++++||+.|++++ ..+.++.+.|++.|.+++++++++ +|.+. ....+.+.+|
T Consensus 145 ------------~~~~~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~-----~~~~~~~~~w 205 (209)
T d3b5ea1 145 ------------PATDLAGIRTLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIPS-GHDIG-----DPDAAIVRQW 205 (209)
T ss_dssp ------------CCCCCTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEESC-CSCCC-----HHHHHHHHHH
T ss_pred ------------cccccccchheeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEECC-CCCCC-----HHHHHHHHHH
Confidence 0112235799999999999987 567788999999999999999997 79873 2345677888
Q ss_pred HH
Q 004067 772 IE 773 (776)
Q Consensus 772 l~ 773 (776)
|.
T Consensus 206 l~ 207 (209)
T d3b5ea1 206 LA 207 (209)
T ss_dssp HH
T ss_pred hC
Confidence 85
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.9e-15 Score=155.45 Aligned_cols=279 Identities=9% Similarity=-0.029 Sum_probs=184.2
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceec---C-CCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKL---S-SSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l---~-~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~ 199 (776)
..+....||| ||++|+...++.|.+||+.++.....+ . ......+..++|||||+.|+.... +.|.+|++..
T Consensus 52 ~~V~~v~fs~---~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~ 128 (337)
T d1gxra_ 52 EVVCAVTISN---PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp SCCCEEEECS---SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred CcEEEEEECC---CCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc
Confidence 4688999999 999999988889999999876543111 1 122234778999999999988765 5799999886
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
...+........ ...+..+.|+||+..++....+
T Consensus 129 ~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~s~~~d------------------------------- 162 (337)
T d1gxra_ 129 PTPRIKAELTSS---------------APACYALAISPDSKVCFSCCSD------------------------------- 162 (337)
T ss_dssp C--EEEEEEECS---------------SSCEEEEEECTTSSEEEEEETT-------------------------------
T ss_pred cccccccccccc---------------cccccccccccccccccccccc-------------------------------
Confidence 544332211110 0013467799999988765532
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
..+.+|++.+++..... ..+...+..++|+++++.++... .+..+.+||+.+++.........
T Consensus 163 -----~~i~~~~~~~~~~~~~~--------~~~~~~v~~l~~s~~~~~~~~~~----~d~~v~i~d~~~~~~~~~~~~~~ 225 (337)
T d1gxra_ 163 -----GNIAVWDLHNQTLVRQF--------QGHTDGASCIDISNDGTKLWTGG----LDNTVRSWDLREGRQLQQHDFTS 225 (337)
T ss_dssp -----SCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEEEEECSS
T ss_pred -----ccccccccccccccccc--------ccccccccccccccccccccccc----ccccccccccccceeeccccccc
Confidence 23788999988766543 34556788899999999877765 34569999999887654444333
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
..... .|.| .+..+++...+| .+++|++..++..+...+...+..+. |+++|+.|+.. ..++ .
T Consensus 226 ~i~~l---~~~~--------~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~i~~v~-~s~~g~~l~s~-s~Dg--~ 288 (337)
T d1gxra_ 226 QIFSL---GYCP--------TGEWLAVGMESS--NVEVLHVNKPDKYQLHLHESCVLSLK-FAYCGKWFVST-GKDN--L 288 (337)
T ss_dssp CEEEE---EECT--------TSSEEEEEETTS--CEEEEETTSSCEEEECCCSSCEEEEE-ECTTSSEEEEE-ETTS--E
T ss_pred ceEEE---EEcc--------cccccceecccc--ccccccccccccccccccccccceEE-ECCCCCEEEEE-eCCC--e
Confidence 32111 1222 233555555666 78999988887766666666666654 99999976544 3443 3
Q ss_pred eeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+.+|.+. .+. .+..+.....+..+.|||||++|+... .+ ..|.+|++
T Consensus 289 i~iwd~~---~~~----~~~~~~~~~~v~~~~~s~d~~~l~t~s-~D---~~I~vWdl 335 (337)
T d1gxra_ 289 LNAWRTP---YGA----SIFQSKESSSVLSCDISVDDKYIVTGS-GD---KKATVYEV 335 (337)
T ss_dssp EEEEETT---TCC----EEEEEECSSCEEEEEECTTSCEEEEEE-TT---SCEEEEEE
T ss_pred EEEEECC---CCC----EEEEccCCCCEEEEEEeCCCCEEEEEe-CC---CeEEEEEE
Confidence 6676544 333 344454445678899999999887653 32 24877774
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=2.9e-17 Score=153.14 Aligned_cols=180 Identities=10% Similarity=0.026 Sum_probs=120.9
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
-||++||..++.. ..| +..+++.|++.||.|+++|+||+|.+. .+|....++.+.. .
T Consensus 3 ~V~~vHG~~~~~~--~~~---~~~l~~~L~~~G~~v~~~d~p~~~~~~---------------~~~~~~~l~~~~~---~ 59 (186)
T d1uxoa_ 3 QVYIIHGYRASST--NHW---FPWLKKRLLADGVQADILNMPNPLQPR---------------LEDWLDTLSLYQH---T 59 (186)
T ss_dssp EEEEECCTTCCTT--STT---HHHHHHHHHHTTCEEEEECCSCTTSCC---------------HHHHHHHHHTTGG---G
T ss_pred EEEEECCCCCCcc--hhH---HHHHHHHHHhCCCEEEEeccCCCCcch---------------HHHHHHHHHHHHh---c
Confidence 5899999766532 122 344678899999999999999887542 3344444433333 3
Q ss_pred CCCcEEEEeechHHHHHHHHHhhCCCce--EEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcE
Q 004067 636 KVGHIGLYGWSYGGYLSAITLARFPDVF--QCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKL 713 (776)
Q Consensus 636 d~~~i~l~G~S~GG~~a~~~a~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~ 713 (776)
...+++|+||||||++++.++.+++... .+++..++........... ..+ ...........++..|+
T Consensus 60 ~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~p~ 128 (186)
T d1uxoa_ 60 LHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQML-DEF----------TQGSFDHQKIIESAKHR 128 (186)
T ss_dssp CCTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGGG-GGG----------TCSCCCHHHHHHHEEEE
T ss_pred cCCCcEEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhhhhh-hhh----------hcccccccccccCCCCE
Confidence 4578999999999999999999988643 4444555443321111000 000 11111223344556899
Q ss_pred EEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCC--CCcHHHHHHHHHHHHHH
Q 004067 714 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR--HRDRIYMEERIWEFIER 774 (776)
Q Consensus 714 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~~~fl~~ 774 (776)
|++||.+|+++|++.+..+++.+ +.++++++++||.... .....++.+.+.+||.+
T Consensus 129 lvi~g~~D~~vp~~~~~~l~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~~ 186 (186)
T d1uxoa_ 129 AVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 186 (186)
T ss_dssp EEEEETTCSSSCHHHHHHHHHHT-----TCEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCCHHHHHHHHHHc-----CCEEEEeCCCCCcCccccCcccHHHHHHHHHHHcC
Confidence 99999999999999999998876 3589999999996532 23346788888888863
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=7.4e-18 Score=166.19 Aligned_cols=192 Identities=17% Similarity=0.182 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|..++..|+ .+|.|+++|+||+|.|... ......|+.+. +...
T Consensus 12 ~~lvllHG~~~~~~-------~~~~~~~~L~-~~~~vi~~D~~G~G~S~~~---------~~~~~~d~~~~---~~~~-- 69 (256)
T d1m33a_ 12 VHLVLLHGWGLNAE-------VWRCIDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLADMAEA---VLQQ-- 69 (256)
T ss_dssp SEEEEECCTTCCGG-------GGGGTHHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHHHHHH---HHTT--
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHh-CCCEEEEEeCCCCCCcccc---------ccccccccccc---cccc--
Confidence 67788999876543 3445577776 5799999999999988531 12234454433 3322
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc------c--------------------ccccccccC
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY------D--------------------TFYTEKYMG 688 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------~--------------------~~~~~~~~~ 688 (776)
..+++.++||||||.+++.+|.++|+.++++++..+...+... . ..+......
T Consensus 70 -~~~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
T d1m33a_ 70 -APDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMG 148 (256)
T ss_dssp -SCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred -cccceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhcc
Confidence 2468999999999999999999999999998887654321100 0 000000000
Q ss_pred -----------------CCCCCc-------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 689 -----------------LPSEDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 689 -----------------~~~~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
.+.... ..+...+....++++++|+|+++|++|..+|++....+.+.+ .+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~l~~~~----~~~~ 224 (256)
T d1m33a_ 149 TETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSE 224 (256)
T ss_dssp STTHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTC----TTCE
T ss_pred ccchhhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCCHHHHHHHHHHC----CCCE
Confidence 000000 011122333456788999999999999999988776665543 5679
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++++++||.+ ..+.++++.+.+.+|+++
T Consensus 225 ~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 225 SYIFAKAAHAP-FISHPAEFCHLLVALKQR 253 (256)
T ss_dssp EEEETTCCSCH-HHHSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCch-HHHCHHHHHHHHHHHHHH
Confidence 99999999976 667789999999999975
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.72 E-value=2.3e-15 Score=160.17 Aligned_cols=354 Identities=12% Similarity=0.026 Sum_probs=206.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
|..+.+++|.+.+.++...+ ...|.+||+++++....... +..+....|||
T Consensus 21 p~~~~~~~d~~~~~~V~~~~---dg~v~vwD~~t~~~~~~l~~------------------------g~~~~~vafSP-- 71 (426)
T d1hzua2 21 PKKQLNDLDLPNLFSVTLRD---AGQIALVDGDSKKIVKVIDT------------------------GYAVHISRMSA-- 71 (426)
T ss_dssp CSSCCSCCCGGGEEEEEETT---TTEEEEEETTTCSEEEEEEC------------------------CSSEEEEEECT--
T ss_pred CCcccccCCCCeEEEEEEcC---CCEEEEEECCCCcEEEEEeC------------------------CCCeeEEEECC--
Confidence 46667899999888887654 35899999999987444421 23577899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccce--ecCCC--CCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPEL--KLSSS--SCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~--~l~~~--~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~ 209 (776)
||++|+.. .++.|.+||+.+++... .+... +...+..+.|||||++|+... ++.+.++|..++...++....
T Consensus 72 -DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~ 150 (426)
T d1hzua2 72 -SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150 (426)
T ss_dssp -TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred -CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeecc
Confidence 99999876 67889999999987541 12211 112245789999999987664 456999999999877665433
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
.... .. ..+. .-.....+..++|++.+++...+. ..+.+
T Consensus 151 ~~~~--~~-~~~~---~~~~~~~i~~s~d~~~~~~~~~~~-----------------------------------~~i~~ 189 (426)
T d1hzua2 151 GMTV--DT-QTYH---PEPRVAAIIASHEHPEFIVNVKET-----------------------------------GKVLL 189 (426)
T ss_dssp EECS--SS-CCEE---SCCCEEEEEECSSSSEEEEEETTT-----------------------------------TEEEE
T ss_pred CCCc--cc-eeec---CCCceeEEEECCCCCEEEEecCCC-----------------------------------CeEEE
Confidence 2100 00 0000 000122445667776665543211 12444
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC-ceeecccc
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDC 368 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~ 368 (776)
++...+....+.. .........+.|+|||++++.... ....+..++..++........... .+... ..
T Consensus 190 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 258 (426)
T d1hzua2 190 VNYKDIDNLTVTS-------IGAAPFLADGGWDSSHRYFMTAAN---NSNKVAVIDSKDRRLSALVDVGKTPHPGRG-AN 258 (426)
T ss_dssp EECSSSSSCEEEE-------EECCSSEEEEEECTTSCEEEEEET---TCSEEEEEETTTTEEEEEEECSSCCCCSCC-EE
T ss_pred EEeccccceeeEE-------eccCCccEeeeECCCCcEEEeeee---cccceeeeecccccEEEEeccCCcccccce-ee
Confidence 4444433222211 123455778999999997766543 234577899988887665543211 11000 00
Q ss_pred cccCCCCccccCCeEEEEeccCCceEEEEEeCCCc--------eeeccccCCeEEEEEEeecCCCcEEEEEEccCC----
Q 004067 369 FTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT--------CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG---- 436 (776)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~--------~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~---- 436 (776)
+ .......++.....+...+..++.... ....+..+...+... .++|||++|++......
T Consensus 259 ~-------~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v-~~sPdg~~l~v~~~~~~s~~~ 330 (426)
T d1hzua2 259 F-------VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI-KTHPKSSHLYVDTTFNPDARI 330 (426)
T ss_dssp E-------EETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE-ECCTTCSEEEECCTTCSSHHH
T ss_pred e-------ecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE-EcCCCCceEEEeecCCCCccc
Confidence 0 111222333333333345666654332 233444444334444 49999999887543210
Q ss_pred CceeeEEEEEeCCCCCCccccceee---------cCCC-CeEEEEEcCCcCEEEEEeeC-CCCCCEEEEEEcCCCceeEe
Q 004067 437 PLESHLYCAKLYPDWNHTLEAPVKL---------TNGK-GKHVAVLDHNMRNFVDFHDS-LDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 437 ~~~~~l~~~~~~~~g~~~~~~~~~l---------~~~~-~~~~~~~spdg~~l~~~~~~-~~~~~~i~~~~~~~~~~~~~ 505 (776)
...+.||.+. .+. ...++ ..+. .+..+.|||||+++++.+.. ......|.++|..+++....
T Consensus 331 ~~tv~vwd~~---t~~----~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~ 403 (426)
T d1hzua2 331 SQSVAVFDLK---NLD----AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 403 (426)
T ss_dssp HTCEEEEETT---CTT----SCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEE
T ss_pred CCEEEEEECC---CCC----cCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEE
Confidence 1225666654 333 22222 2222 36678999999999876643 34456799999999886665
Q ss_pred ec
Q 004067 506 LY 507 (776)
Q Consensus 506 l~ 507 (776)
+.
T Consensus 404 i~ 405 (426)
T d1hzua2 404 VK 405 (426)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=1.2e-14 Score=154.43 Aligned_cols=356 Identities=11% Similarity=0.006 Sum_probs=203.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..+.+..|.+.+.++...+. ..|.+||.++++....... +..+....|||
T Consensus 22 ~~~~~~~~~~~~~~v~~~d~---g~v~v~D~~t~~v~~~~~~------------------------g~~~~~v~fSp--- 71 (432)
T d1qksa2 22 TQQMNDWDLENLFSVTLRDA---GQIALIDGSTYEIKTVLDT------------------------GYAVHISRLSA--- 71 (432)
T ss_dssp SSCCSCCCGGGEEEEEETTT---TEEEEEETTTCCEEEEEEC------------------------SSCEEEEEECT---
T ss_pred CceeecCCCCcEEEEEEcCC---CEEEEEECCCCcEEEEEeC------------------------CCCeeEEEECC---
Confidence 34445667777776766542 5799999999987555431 24578899999
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccce--ecCCC--CCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCC
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPEL--KLSSS--SCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~--~l~~~--~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~ 210 (776)
||++|+.. .++.+.+||+.+++... .+... +...+..+.|||||++|+... ++.+.+||.++++.........
T Consensus 72 DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~ 151 (432)
T d1qksa2 72 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151 (432)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCC
Confidence 99999976 67889999999887541 22221 112255678999999986554 4579999999998876654321
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
.. .. . ..-....+..++.+||||+.+++...+. ..+.++
T Consensus 152 ~~--~~-~---~~~~~~~~~~~v~~s~dg~~~~vs~~~~-----------------------------------~~i~~~ 190 (432)
T d1qksa2 152 MT--YD-E---QEYHPEPRVAAILASHYRPEFIVNVKET-----------------------------------GKILLV 190 (432)
T ss_dssp EC--TT-T---CCEESCCCEEEEEECSSSSEEEEEETTT-----------------------------------TEEEEE
T ss_pred cc--cc-c---eeccCCCceeEEEECCCCCEEEEEEccC-----------------------------------CeEEEE
Confidence 10 00 0 0000112234567889988877654322 347888
Q ss_pred EcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccc
Q 004067 291 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFT 370 (776)
Q Consensus 291 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 370 (776)
|..+++...+.. .........+.|+|||++++..+.. ...+..+|.++++............... +.
T Consensus 191 d~~~~~~~~~~~-------i~~g~~~~~~~~spdg~~~~va~~~---~~~v~v~d~~~~~~~~~~~~g~~~~~~~---~~ 257 (432)
T d1qksa2 191 DYTDLNNLKTTE-------ISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGKLVAIEDTGGQTPHPG---RG 257 (432)
T ss_dssp ETTCSSEEEEEE-------EECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTEEEEEEECSSSSBCCT---TC
T ss_pred EccCCCcceEEE-------EcccCccccceECCCCCEEEEeccc---cceEEEeecccceEEEEeccCccccccC---cc
Confidence 888766443321 1223456789999999977776543 3358889998887765554322211100 00
Q ss_pred cCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCC-
Q 004067 371 PLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP- 449 (776)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~- 449 (776)
+. ......+.++.....|...+..|...... +....+.+.... +++++..++..+..+. .+||....-.
T Consensus 258 ~~---~~~~~~g~~~~~~~lg~~~v~~~~~~~~~---~~~~~~~v~~~~-~~~~g~~~~~~s~p~~---~~lw~~~~~~~ 327 (432)
T d1qksa2 258 AN---FVHPTFGPVWATSHMGDDSVALIGTDPEG---HPDNAWKILDSF-PALGGGSLFIKTHPNS---QYLYVDATLNP 327 (432)
T ss_dssp EE---EEETTTEEEEEEEBSSSSEEEEEECCTTT---CTTTBTSEEEEE-ECSCSCCCCEECCTTC---SEEEEECTTCS
T ss_pred cc---eecCCCCceecccccCCceEEeccccccc---ccccccEEEEEE-EcCCCCeEEEEecCCc---cceeecccCCC
Confidence 00 01123334444444444566666644322 222233344333 5565554333333222 3444322100
Q ss_pred -----------CCCCc----c-ccc--------eeecCCC-CeEEEEEcCCcCEEEEEeeC-CCCCCEEEEEEcCCCcee
Q 004067 450 -----------DWNHT----L-EAP--------VKLTNGK-GKHVAVLDHNMRNFVDFHDS-LDSPPRILLCSLQDGSLV 503 (776)
Q Consensus 450 -----------~g~~~----~-~~~--------~~l~~~~-~~~~~~~spdg~~l~~~~~~-~~~~~~i~~~~~~~~~~~ 503 (776)
+|... . ... .+|+.+. .+..+.|||||+++++.... ...-+.|.++|..+++..
T Consensus 328 ~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~ 407 (432)
T d1qksa2 328 EAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 407 (432)
T ss_dssp SHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence 11000 0 000 1122222 35567999999999887643 233467999999999865
Q ss_pred Eeec
Q 004067 504 LPLY 507 (776)
Q Consensus 504 ~~l~ 507 (776)
+.++
T Consensus 408 ~~i~ 411 (432)
T d1qksa2 408 HVIK 411 (432)
T ss_dssp EEEC
T ss_pred eEec
Confidence 6554
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.69 E-value=6.3e-17 Score=158.09 Aligned_cols=225 Identities=11% Similarity=-0.033 Sum_probs=144.1
Q ss_pred CCCCceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC----cEEEEE
Q 004067 520 QLEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG----ILVWKL 594 (776)
Q Consensus 520 ~~~~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G----~~v~~~ 594 (776)
....++++.+.++ .|.++.+++|.|.+. +++++|+||++||++..... ......+.+.+.| +.++.+
T Consensus 11 ~~~~~~~~~~~S~~lg~~~~~~v~~P~~~--~~~~~Pvvv~lhG~~~~~~~------~~~~~l~~l~~~~~~~~~i~v~~ 82 (246)
T d3c8da2 11 PEIPAKEIIWKSERLKNSRRVWIFTTGDV--TAEERPLAVLLDGEFWAQSM------PVWPVLTSLTHRQQLPPAVYVLI 82 (246)
T ss_dssp CSSCCEEEEEEETTTTEEEEEEEEEC-------CCCCEEEESSHHHHHHTS------CCHHHHHHHHHTTSSCSCEEEEE
T ss_pred CCCCcEEEEEECCCCCCEEEEEEEECCCC--CCCCCCEEEEeCCcchhccC------cHHHHHHHHHHhCCCCceEEeec
Confidence 3557788899886 488899999999875 23679999999996543221 1222345555554 455566
Q ss_pred CCCCCCCCchhhhhhhhhccCCccHHH-H-HHHHHHHHHc--CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcC
Q 004067 595 DNRGTARRGLKFEASIKHNCGRIDAED-Q-LTGAEWLIKQ--GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA 670 (776)
Q Consensus 595 d~rg~g~~~~~~~~~~~~~~~~~~~~D-~-~~~i~~l~~~--~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~ 670 (776)
+..... ... . .........+ + ...+..+.+. ..+|.++++|+|+||||++|+.++.++|++|+++++.+
T Consensus 83 ~~~~~~----~~~--~-~~~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~s 155 (246)
T d3c8da2 83 DAIDTT----HRA--H-ELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQS 155 (246)
T ss_dssp CCCSHH----HHH--H-HSSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEES
T ss_pred cccccc----ccc--c-ccCccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCC
Confidence 543111 000 0 0111111111 1 1222333332 34688999999999999999999999999999999999
Q ss_pred CCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecC
Q 004067 671 PVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 750 (776)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 750 (776)
|..++.... ......+....+.....+...|+++.+|..|..+ ...+++++++|+++|.++++.+++|
T Consensus 156 g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~G 223 (246)
T d3c8da2 156 GSYWWPHRG-----------GQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG 223 (246)
T ss_dssp CCTTTTCTT-----------SSSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC
T ss_pred cccccccCC-----------ccchHHHHHHhhhhhhhccCCCeEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 987653221 1111222233344455566789999999999876 4678899999999999999999997
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 751 ERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 751 ~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
||.+. .....+...+.||-..
T Consensus 224 -gH~~~---~W~~~l~~~l~~l~~~ 244 (246)
T d3c8da2 224 -GHDAL---CWRGGLMQGLIDLWQP 244 (246)
T ss_dssp -CSCHH---HHHHHHHHHHHHHHGG
T ss_pred -CCChH---HHHHHHHHHHHHHHHh
Confidence 89653 3455556666666443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.69 E-value=1e-14 Score=147.70 Aligned_cols=278 Identities=12% Similarity=0.065 Sum_probs=176.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEee-cCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVF-SPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++++|||+.|+|... ..|++|++++++...+. .|. ..+....|+|
T Consensus 20 ~~~~a~~~~g~~l~~~~~------~~v~i~~~~~~~~~~~~~~H~------------------------~~v~~~~~sp- 68 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNG------TSVYTVPVGSLTDTEIYTEHS------------------------HQTTVAKTSP- 68 (311)
T ss_dssp CCCCEECTTSSEEEEEET------TEEEEEETTCSSCCEEECCCS------------------------SCEEEEEECT-
T ss_pred eEEEEEcCCCCEEEEEeC------CEEEEEECCCCceeEEEcCCC------------------------CCEEEEEEeC-
Confidence 356789999999999753 35999999988765444 332 4789999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccce--ecCCCCCCCccCceeCCCCCEEEEEECC---cEEEEecCCCceeEEeeCC
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPEL--KLSSSSCSPVIDPHLSSDGTMIAFVRDC---ELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~SpDg~~la~~~~~---~l~~~~l~~g~~~~lt~~~ 209 (776)
||++|+.. .++.|.+||+.+++... .+.... ..+..+.|+|||+.|+..+.+ .+.++++++++........
T Consensus 69 --~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h 145 (311)
T d1nr0a1 69 --SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ 145 (311)
T ss_dssp --TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC
T ss_pred --CCCeEeccccCceEeeeeeecccccccccccccc-Ccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999876 78899999999876541 233233 347889999999999988753 3788888877653221111
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
. ..+..+.|+|||+.++...... ..|.+
T Consensus 146 ~-----------------~~v~~v~~~~~~~~~l~sgs~d-----------------------------------~~i~i 173 (311)
T d1nr0a1 146 A-----------------RAMNSVDFKPSRPFRIISGSDD-----------------------------------NTVAI 173 (311)
T ss_dssp S-----------------SCEEEEEECSSSSCEEEEEETT-----------------------------------SCEEE
T ss_pred c-----------------cccccccccccceeeecccccc-----------------------------------ccccc
Confidence 1 1145788999999754433221 23789
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccccc
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCF 369 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 369 (776)
||..+++..... ..+...+..+.|+|||+.++... .+..|.+||+.++......+.............
T Consensus 174 ~d~~~~~~~~~~--------~~~~~~i~~v~~~p~~~~l~~~~----~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V 241 (311)
T d1nr0a1 174 FEGPPFKFKSTF--------GEHTKFVHSVRYNPDGSLFASTG----GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 241 (311)
T ss_dssp EETTTBEEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred cccccccccccc--------ccccccccccccCcccccccccc----ccccccccccccccccccccccccccccccccc
Confidence 999988765542 34566789999999999887665 345689999988776544332211000000000
Q ss_pred ccCCCCcccc-CCeEEEEeccCCceEEEEEeCCCcee-eccccCC---eEEEEEEeecCCCcEEEEEEccCCCceeeEEE
Q 004067 370 TPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCL-GPITEGD---WMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444 (776)
Q Consensus 370 ~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~---~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~ 444 (776)
..+.++ ++.++++...+| .|++||.++++. +.+..+. ..+.. +.++++.|+..+ .++. +.+|.
T Consensus 242 ----~~~~~s~~~~~l~tgs~Dg--~v~iwd~~t~~~~~~l~~~~~~~~~~~~---~~~~~~~l~s~s-~dG~--i~~wd 309 (311)
T d1nr0a1 242 ----FGLTWSPDGTKIASASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLG---IIWTKQALVSIS-ANGF--INFVN 309 (311)
T ss_dssp ----EEEEECTTSSEEEEEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEE---EEECSSCEEEEE-TTCC--EEEEE
T ss_pred ----cccccCCCCCEEEEEeCCC--eEEEEECCCCcEEEEEECCCCccceEEE---EEecCCEEEEEE-CCCE--EEEEe
Confidence 001222 234556666677 899999887764 3343331 22233 334455554443 4443 66664
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=4.4e-16 Score=156.05 Aligned_cols=240 Identities=12% Similarity=0.042 Sum_probs=157.2
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
..+.+++.++ .|++++..++.|. +++|+|+++||+++... ...|... ..+.+.+++.|+++++++..+.+.
T Consensus 8 ~v~~~~~~s~~~~r~~~~~v~~p~------~~~Pvl~llhG~~~~~d-~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 79 (288)
T d1sfra_ 8 PVEYLQVPSPSMGRDIKVQFQSGG------ANSPALYLLDGLRAQDD-FSGWDIN-TPAFEWYDQSGLSVVMPVGGQSSF 79 (288)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS------TTBCEEEEECCTTCCSS-SCHHHHH-CCHHHHHTTSSCEEEEECCCTTCT
T ss_pred EEEEEEEECCCCCcEEEEEEeCCC------CCceEEEEcCCCCCCCc-chhhhhh-ccHHHHHHhCCCEEEEeccCCCCC
Confidence 4677788765 6788998888763 47899999999765432 1123211 123567888999999999876654
Q ss_pred Cchhhhhhh-hh--ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc
Q 004067 602 RGLKFEASI-KH--NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678 (776)
Q Consensus 602 ~~~~~~~~~-~~--~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 678 (776)
....+.... .. .....+..-+.+.+.++.++..+|+++++|+|+||||++|+.+++++|++|+++++++|..++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~ 159 (288)
T d1sfra_ 80 YSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQA 159 (288)
T ss_dssp TCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTST
T ss_pred CccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCccccccc
Confidence 433211110 00 011112223466677888887789999999999999999999999999999999999998775432
Q ss_pred ccc-------------ccccccCCCCCCccchhcCChhhhhccC---CCcEEEEecCCCCccCh--------------HH
Q 004067 679 DTF-------------YTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHF--------------RH 728 (776)
Q Consensus 679 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~--------------~~ 728 (776)
... ......+.+ ....+...++...+.+. ..++++.+|..|..++. .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~ 237 (288)
T d1sfra_ 160 MGPTLIGLAMGDAGGYKASDMWGPK--EDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTS 237 (288)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCST--TSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhcccccHhhhcCCc--chhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHH
Confidence 110 000111111 12334455555544333 46889999999877663 56
Q ss_pred HHHHHHHHHHCCCCeEEEEecCC-CCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 729 TARLINALVAARKPYEILIFPDE-RHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 729 ~~~~~~~l~~~~~~~~~~~~~~~-~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+.++.++|.+.+.+.++..+++. +|.+.. ....+...+.||.+.
T Consensus 238 ~~~l~~~l~~~g~~~~~~~~~~~G~H~w~~---w~~~l~~~l~~l~~a 282 (288)
T d1sfra_ 238 NIKFQDAYNAGGGHNGVFDFPDSGTHSWEY---WGAQLNAMKPDLQRA 282 (288)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSCCCSSHHH---HHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEEECCCCccChhH---HHHHHHHHHHHHHHh
Confidence 77899999999999999998865 697522 233334455555543
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.68 E-value=1.1e-16 Score=151.51 Aligned_cols=183 Identities=16% Similarity=0.113 Sum_probs=124.9
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
++.|+||++||++++.. .+..+++.+. .++.|+.++.+..+.....+.. .......+..++...++.+..
T Consensus 15 ~~~P~vi~lHG~G~~~~-------~~~~~~~~l~-~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 84 (203)
T d2r8ba1 15 AGAPLFVLLHGTGGDEN-------QFFDFGARLL-PQATILSPVGDVSEHGAARFFR--RTGEGVYDMVDLERATGKMAD 84 (203)
T ss_dssp TTSCEEEEECCTTCCHH-------HHHHHHHHHS-TTSEEEEECCSEEETTEEESSC--BCGGGCBCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHH-------HHHHHHHHhc-cCCeEEEecccccccccccccc--ccCccccchhHHHHHHHHHHH
Confidence 56799999999765533 2233455554 4688888876543222111000 001111223333333333221
Q ss_pred ---c--CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhh
Q 004067 632 ---Q--GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 706 (776)
Q Consensus 632 ---~--~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (776)
. ..++.++++++|+|+||.+++.++..+|+.+.++++.++....... ...
T Consensus 85 ~l~~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~-------------------------~~~ 139 (203)
T d2r8ba1 85 FIKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPK-------------------------ISP 139 (203)
T ss_dssp HHHHHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCC-------------------------CCC
T ss_pred HHHHhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccc-------------------------ccc
Confidence 1 2357789999999999999999999999999999998886432100 001
Q ss_pred ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 707 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 707 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.....|++++||++|.++|++++.++++.|++.|.++++++|++ +|.+. .+..+.+.+||.+|
T Consensus 140 ~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~-----~~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 140 AKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIR-----SGEIDAVRGFLAAY 202 (203)
T ss_dssp CCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEESS-CSSCC-----HHHHHHHHHHHGGG
T ss_pred ccccchhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHhc
Confidence 12346999999999999999999999999999999999999987 79873 24568899999876
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=8.4e-17 Score=159.39 Aligned_cols=211 Identities=14% Similarity=0.085 Sum_probs=139.8
Q ss_pred CCCceEEEEEcCCC-cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC
Q 004067 521 LEPPDIVQIQANDG-TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 599 (776)
Q Consensus 521 ~~~~~~~~~~~~dg-~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~ 599 (776)
..+.+.+.+.+.|| .++.++++.|.+.. ..+++|+|+++||++....... ....+..+..++.|+++++++.
T Consensus 10 ~~~~~~~~~~s~dg~~~~~~~v~~P~~~~-~~~~yPvi~~lhG~~~~~~~~~------~~~~~~~~~~~~~vV~v~~~~~ 82 (265)
T d2gzsa1 10 FYHFSATSFDSVDGTRHYRVWTAVPNTTA-PASGYPILYMLDGNAVMDRLDD------ELLKQLSEKTPPVIVAVGYQTN 82 (265)
T ss_dssp SEEEEEEEEECTTSSCEEEEEEEEESSCC-CTTCEEEEEESSHHHHHHHCCH------HHHHHHTTSCCCEEEEEEESSS
T ss_pred cceeEEEEEEcCCCCEEEEEEEEcCCCCC-CCCCceEEEEecCcchhhhHHH------HHHHHHHhcCCCeEEEecCCCC
Confidence 44578899999887 57999999999863 4478999999999654432111 1123445678999999999887
Q ss_pred CCCchhhhhhhhh-----------------ccCC-ccHH--HHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 600 ARRGLKFEASIKH-----------------NCGR-IDAE--DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 600 g~~~~~~~~~~~~-----------------~~~~-~~~~--D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
...+......... ..+. .... .....+.++.++..+|+++++|+|+||||++++.++.+
T Consensus 83 ~~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~- 161 (265)
T d2gzsa1 83 LPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS- 161 (265)
T ss_dssp SSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-
T ss_pred CcCcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-
Confidence 6543322111000 0000 0111 12233455555666888999999999999999998775
Q ss_pred CCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCC--------CCccChHHHHH
Q 004067 660 PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMI--------DENVHFRHTAR 731 (776)
Q Consensus 660 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~--------D~~v~~~~~~~ 731 (776)
++.|.++++.+|...|... ..+....+.........|+++.+|.. |..+++.++.+
T Consensus 162 ~~~f~~~~a~s~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~ 225 (265)
T d2gzsa1 162 SSYFRSYYSASPSLGRGYD----------------ALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHT 225 (265)
T ss_dssp CSSCSEEEEESGGGSTTHH----------------HHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHHHHH
T ss_pred CcccCEEEEECCcccccch----------------hhhhccccccccccCCCcEEEEcCCcccccccccccchhHHHHHH
Confidence 5667788888887544211 11111112222334456777777766 66778889999
Q ss_pred HHHHHHHCCCCeEEEEecCCCCCC
Q 004067 732 LINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 732 ~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
++++|+++|+++++.+||+++|..
T Consensus 226 l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 226 TLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp HHHHHHHTTCCEEEEECTTCCHHH
T ss_pred HHHHHHHCCCCEEEEEcCCCCcch
Confidence 999999999999999999999953
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.66 E-value=6.1e-16 Score=152.13 Aligned_cols=196 Identities=13% Similarity=0.039 Sum_probs=120.5
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|+||++||.+++.. .|..++..|++.||.|+++|+||+|.+....... ..+...+...+...
T Consensus 15 ~~P~ivllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~Dl~G~G~s~~~~~~~---------~~~~~~~~~~~~~~ 78 (264)
T d1r3da_ 15 RTPLVVLVHGLLGSGA-------DWQPVLSHLARTQCAALTLDLPGHGTNPERHCDN---------FAEAVEMIEQTVQA 78 (264)
T ss_dssp TBCEEEEECCTTCCGG-------GGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCCCCHH-------HHHHHHHHHHhCCCEEEEEecccccccccccccc---------cchhhhhhhhcccc
Confidence 4589999999876644 3566788899999999999999999886432211 11122222222223
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-----------------------------ccccc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-----------------------------DTFYT 683 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-----------------------------~~~~~ 683 (776)
......++.++||||||.+++.++.++|+.+..++...+....... ...+.
T Consensus 79 ~~~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (264)
T d1r3da_ 79 HVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQ 158 (264)
T ss_dssp TCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTT
T ss_pred cccccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 2335578999999999999999999999877666543221110000 00000
Q ss_pred ccccCCCCC-------------Cc----------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 684 EKYMGLPSE-------------DP----------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 684 ~~~~~~~~~-------------~~----------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
......... .. ...........+..++.|+++++|++|..+ ..+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~-----~~~~~~----- 228 (264)
T d1r3da_ 159 QAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAES----- 228 (264)
T ss_dssp SGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHH-----
T ss_pred hhhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHH-----HHHHhc-----
Confidence 000000000 00 000111223446778899999999999543 222222
Q ss_pred CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 741 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.++++++++++||.+ ..+.++++.+.+.+||+..
T Consensus 229 ~~~~~~~i~~~gH~~-~~e~P~~~~~~i~~fl~~l 262 (264)
T d1r3da_ 229 SGLSYSQVAQAGHNV-HHEQPQAFAKIVQAMIHSI 262 (264)
T ss_dssp HCSEEEEETTCCSCH-HHHCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCch-HHHCHHHHHHHHHHHHHhc
Confidence 356899999999986 5678899999999999864
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.65 E-value=5.1e-13 Score=138.90 Aligned_cols=311 Identities=10% Similarity=-0.052 Sum_probs=178.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
....++||||++|+...........+||++|.++++....... .....+.|||
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-------------------------~~~~~~a~Sp-- 75 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-------------------------GFLPNPVAAH-- 75 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-------------------------CCCccEEEcC--
Confidence 3677899999999766544333346899999999987543321 1223578999
Q ss_pred CCceEEEEe-----------CCCcEEEEeCCCCccceecCCCCCC------CccCceeCCCCCEEEEEEC---CcEEEEe
Q 004067 137 SKKKIIMVP-----------LPDGIYFQDLSCSKPELKLSSSSCS------PVIDPHLSSDGTMIAFVRD---CELHVLN 196 (776)
Q Consensus 137 ~dg~~l~~~-----------~~~~l~~~d~~~~~~~~~l~~~~~~------~~~~~~~SpDg~~la~~~~---~~l~~~~ 196 (776)
||++|++. .++.|.+||+.+++.+..+...... ......|||||+.+++... +.+.+++
T Consensus 76 -DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 76 -SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred -CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence 99999987 2456999999999876333222111 1245788999998766542 3466666
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
..+++....... ...+.++|||+.+++.....
T Consensus 155 ~~~~~~~~~~~~---------------------~~~~~~s~~g~~~~v~~~~d--------------------------- 186 (373)
T d2madh_ 155 QGGSSDDQLLSS---------------------PTCYHIHPGAPSTFYLLCAQ--------------------------- 186 (373)
T ss_pred ccCCeEEEEecc---------------------ceeEEEecCCCcEEEEEcCC---------------------------
Confidence 666554333222 22567999999876544221
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
..+.+|+..+++.......... ............+++++..++.. ....++.++..++....+..
T Consensus 187 --------g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~ 251 (373)
T d2madh_ 187 --------GGLAKTDHAGGAAGAGLVGAML--TAAQNLLTQPAQANKSGRIVWPV-----YSGKILQADISAAGATNKAP 251 (373)
T ss_pred --------CeEEEEEcCCceeeEEEeeecc--ccCccceeeeEEECCCceEEEec-----CCceEEEEEcCCCeEEEEEe
Confidence 3467888887776544221100 01222334456677777544332 24457788877766544432
Q ss_pred eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 357 EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
.... ...........+...... ++++++.+++......
T Consensus 252 ~~~~-------------------~~~~~~~~~~~~~~~~~~-----------------------~~~d~~~~~~~~~~~~ 289 (373)
T d2madh_ 252 IDAL-------------------SGGRKADTWRPGGWQQVA-----------------------YLKSSDGIYLLTSEQS 289 (373)
T ss_pred eccc-------------------cCcEEeeeeccCcceeeE-----------------------EecCCCeEEEecCCCc
Confidence 2111 000111111111112222 3333333332221110
Q ss_pred -----CceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 437 -----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 437 -----~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
.....++.+++. .++ ....+........+.|||||++++|+....+ ..|+++|..+|+.++.+.
T Consensus 290 ~~~~~~~~~~v~~~d~~-t~~----~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 290 AWKLHAAAKEVTSVTGL-VGQ----TSSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred eEEeecCCCeEEEEECC-CCc----EEEEecCCCCeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEEEC
Confidence 001245555653 232 4555655556778999999999887765544 469999999999877664
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.64 E-value=2.3e-15 Score=143.60 Aligned_cols=116 Identities=15% Similarity=0.037 Sum_probs=90.0
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG 711 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 711 (776)
..+|.++++++|+|+||++++.++.. .+..+.+++..++..... ..... ......+.
T Consensus 101 ~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~----------~~~~~------------~~~~~~~~ 158 (218)
T d1auoa_ 101 TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF----------GDELE------------LSASQQRI 158 (218)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC----------CTTCC------------CCHHHHTC
T ss_pred hCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccc----------ccccc------------cchhccCC
Confidence 45799999999999999999988754 566789999887653210 00000 00112347
Q ss_pred cEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 712 KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 712 P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
|+|++||+.|.+||++.++++++.|++.+.+++++.|+ ++|.+. .+.+..+.+||.+.|
T Consensus 159 pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~~~~i~~wl~~~l 217 (218)
T d1auoa_ 159 PALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIGAWLAARL 217 (218)
T ss_dssp CEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999997 689763 345788999998865
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.64 E-value=2.6e-13 Score=136.18 Aligned_cols=271 Identities=12% Similarity=0.026 Sum_probs=174.2
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.++.|.+||+++++....+..+. ....++|||||++|+.... +.|.++|+++++..........
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g~--~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~------------ 75 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS------------ 75 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS------------
T ss_pred CCCEEEEEECCCCeEEEEEECCC--CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc------------
Confidence 45679999999998774444332 3567899999999876553 5799999999876554333221
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...+.|++||+.++...... ..+.+++..+++....-
T Consensus 76 ------~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~-- 112 (301)
T d1l0qa2 76 ------PQGVAVSPDGKQVYVTNMAS-----------------------------------STLSVIDTTSNTVAGTV-- 112 (301)
T ss_dssp ------EEEEEECTTSSEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEE--
T ss_pred ------cccccccccccccccccccc-----------------------------------ceeeecccccceeeeec--
Confidence 34678999999887655321 34688888888755431
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
........+.|+|||+.++..... ...+.+++..++.............. -.+.+ +++.+
T Consensus 113 -------~~~~~~~~~~~~~dg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~ 172 (301)
T d1l0qa2 113 -------KTGKSPLGLALSPDGKKLYVTNNG---DKTVSVINTVTKAVINTVSVGRSPKG---IAVTP-------DGTKV 172 (301)
T ss_dssp -------ECSSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECCSSEEE---EEECT-------TSSEE
T ss_pred -------cccccceEEEeecCCCeeeeeecc---ccceeeeeccccceeeecccCCCceE---EEeec-------cccce
Confidence 223345678999999977766533 34578899988876555443322110 01222 22334
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
+......+ .++.++....+............... ++++|+.+++....... ..++.+++. .++ ....+..
T Consensus 173 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~v~~~~~~~--~~v~v~D~~-t~~----~~~~~~~ 242 (301)
T d1l0qa2 173 YVANFDSM--SISVIDTVTNSVIDTVKVEAAPSGIA-VNPEGTKAYVTNVDKYF--NTVSMIDTG-TNK----ITARIPV 242 (301)
T ss_dssp EEEETTTT--EEEEEETTTTEEEEEEECSSEEEEEE-ECTTSSEEEEEEECSSC--CEEEEEETT-TTE----EEEEEEC
T ss_pred eeeccccc--ccccccccceeeeecccccCCcceee-cccccccccccccccee--eeeeeeecC-CCe----EEEEEcC
Confidence 33333333 66677766666555444444444444 89999998877654332 356677763 222 3455666
Q ss_pred CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 464 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 464 ~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
+.....++|||||++|+...+.. ..|.++|..+++.+..+
T Consensus 243 ~~~~~~va~spdg~~l~va~~~~---~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 243 GPDPAGIAVTPDGKKVYVALSFC---NTVSVIDTATNTITATM 282 (301)
T ss_dssp CSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEECCC---CeEEEEECCCCeEEEEE
Confidence 66678899999999876665443 37999999999876655
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.64 E-value=1.4e-14 Score=145.83 Aligned_cols=274 Identities=14% Similarity=0.100 Sum_probs=174.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.++|||||++|+..+. + ..|.+||+++++..+.... .+...+....|+|
T Consensus 15 V~~l~~s~dg~~l~s~s~-D----g~v~vWd~~~~~~~~~~~~----------------------~h~~~v~~v~~~~-- 65 (299)
T d1nr0a2 15 ITALSSSADGKTLFSADA-E----GHINSWDISTGISNRVFPD----------------------VHATMITGIKTTS-- 65 (299)
T ss_dssp EEEEEECTTSSEEEEEET-T----SCEEEEETTTCCEEECSSC----------------------SCSSCEEEEEECT--
T ss_pred cEEEEECCCCCEEEEEcC-C----CeEEEEECCCCcEEEEEcC----------------------CCCCcEEEEEeec--
Confidence 588999999999986544 2 4699999999886554421 0124688999999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccce--ecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPEL--KLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||+.++...++.+.+|+..+..... .........+....|+|||+.++....+.+.+++.. +...+.....
T Consensus 66 -~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~~~~~~~~---- 138 (299)
T d1nr0a2 66 -KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG--KLTEVPISYN---- 138 (299)
T ss_dssp -TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT--EEEEEECSSC----
T ss_pred -cceeecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccc--cccccccccc----
Confidence 9998888899999999987655330 111111223566899999999988888888888743 3333222211
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
...++|+||++.|+....+ ..|.+||+.+
T Consensus 139 ---------------~~~~~~s~~~~~l~~g~~d------------------------------------g~i~~~d~~~ 167 (299)
T d1nr0a2 139 ---------------SSCVALSNDKQFVAVGGQD------------------------------------SKVHVYKLSG 167 (299)
T ss_dssp ---------------EEEEEECTTSCEEEEEETT------------------------------------SEEEEEEEET
T ss_pred ---------------ccccccccccccccccccc------------------------------------cccccccccc
Confidence 2357899999988876532 3578999988
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE----eccCceeecccccc
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV----EELDSWVNLHDCFT 370 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~~~~~~~~~~~~~ 370 (776)
++...+.. ..+...+..++|+|+++.++... .+..|++||+.++....... +...... -.|+
T Consensus 168 ~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~---l~~s 233 (299)
T d1nr0a2 168 ASVSEVKT-------IVHPAEITSVAFSNNGAFLVATD----QSRKVIPYSVANNFELAHTNSWTFHTAKVAC---VSWS 233 (299)
T ss_dssp TEEEEEEE-------EECSSCEEEEEECTTSSEEEEEE----TTSCEEEEEGGGTTEESCCCCCCCCSSCEEE---EEEC
T ss_pred cccccccc-------ccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc---cccc
Confidence 87665533 34556788999999999877665 33458999988765432211 1111110 0122
Q ss_pred cCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecc-c--cC-CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 371 PLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI-T--EG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~l-t--~~-~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
| ++.++++...+| .|++|+++.+....+ . .+ ...+.. . ++++++.|+. +..++. ++||.++
T Consensus 234 ~--------~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~-~~~~~~~l~s-~s~D~~--i~iWdl~ 298 (299)
T d1nr0a2 234 P--------DNVRLATGSLDN--SVIVWNMNKPSDHPIIIKGAHAMSSVNS-V-IWLNETTIVS-AGQDSN--IKFWNVP 298 (299)
T ss_dssp T--------TSSEEEEEETTS--CEEEEETTCTTSCCEEETTSSTTSCEEE-E-EEEETTEEEE-EETTSC--EEEEECC
T ss_pred c--------cccceEEEcCCC--EEEEEECCCCCcceEEEecCCCCCcEEE-E-EECCCCEEEE-EeCCCE--EEEEecc
Confidence 2 233555555666 799999876543222 1 12 223333 3 3456676554 444543 8898864
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.62 E-value=2.9e-15 Score=150.30 Aligned_cols=213 Identities=8% Similarity=-0.076 Sum_probs=130.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|.++++.... ..|+||++||.+++.. .|..++..|++ +|.|+++|+||+|.|........
T Consensus 16 ~g~~i~y~~~G---------~g~~vvllHG~~~~~~-------~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~~~-- 76 (298)
T d1mj5a_ 16 KGRRMAYIDEG---------TGDPILFQHGNPTSSY-------LWRNIMPHCAG-LGRLIACDLIGMGDSDKLDPSGP-- 76 (298)
T ss_dssp TTEEEEEEEES---------CSSEEEEECCTTCCGG-------GGTTTGGGGTT-SSEEEEECCTTSTTSCCCSSCST--
T ss_pred CCEEEEEEEEc---------CCCcEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEEeCCCCCCCCCCccccc--
Confidence 78889987653 1267889999877654 23444666654 69999999999998864322111
Q ss_pred ccCCccHHHHHHHHHH-HHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc-----------
Q 004067 613 NCGRIDAEDQLTGAEW-LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT----------- 680 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~-l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~----------- 680 (776)
......+..+.+.. +.... ..+++.++||||||.+++.++.++|+.+.++++..+.........
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
T d1mj5a_ 77 --ERYAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQA 152 (298)
T ss_dssp --TSSCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHH
T ss_pred --cccccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccccccccchhhhhhhhhhhhh
Confidence 11123344433333 33433 346899999999999999999999999999887654432110000
Q ss_pred --------------ccc----ccccCCCCC-------------Cccch---------------------hcCChhhhhcc
Q 004067 681 --------------FYT----EKYMGLPSE-------------DPVGY---------------------EYSSVMHHVHK 708 (776)
Q Consensus 681 --------------~~~----~~~~~~~~~-------------~~~~~---------------------~~~~~~~~~~~ 708 (776)
.+. ......... ..... ........+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (298)
T d1mj5a_ 153 FRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSE 232 (298)
T ss_dssp HHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhhhhhhhhhccccccccchhhhhhhhhhhhccchhhhhhhhhhhhhhhhcchhhhhhhhhhhhhhhhhh
Confidence 000 000000000 00000 00011123467
Q ss_pred CCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 709 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 709 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+..|+|+++|++|...+ ....++.+ .-...++++. ++||.+ ..+.++++.+.+.+||++.
T Consensus 233 ~~~P~l~i~g~~d~~~~-~~~~~~~~----~~p~~~~~~~-~~GH~~-~~e~P~~v~~~i~~fl~~~ 292 (298)
T d1mj5a_ 233 SPIPKLFINAEPGALTT-GRMRDFCR----TWPNQTEITV-AGAHFI-QEDSPDEIGAAIAAFVRRL 292 (298)
T ss_dssp CCSCEEEEEEEECSSSS-HHHHHHHT----TCSSEEEEEE-EESSCG-GGTCHHHHHHHHHHHHHHH
T ss_pred cceeEEEEecCCCCcCh-HHHHHHHH----HCCCCEEEEe-CCCCch-HHhCHHHHHHHHHHHHhhh
Confidence 78999999999998765 33444333 3345666555 569976 6778999999999999874
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=4e-13 Score=140.42 Aligned_cols=311 Identities=12% Similarity=0.028 Sum_probs=178.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.++|||||++||--+ ...|.+||+.+++........... ..............+...+....|+|
T Consensus 65 V~~l~fs~dg~~lasg~------d~~i~iW~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~V~~l~~s~-- 131 (388)
T d1erja_ 65 VCCVKFSNDGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAA-----NKDPENLNTSSSPSSDLYIRSVCFSP-- 131 (388)
T ss_dssp CCEEEECTTSSEEEEEC------BSCEEEEETTTCCEEEEECC----------------------CCCCBEEEEEECT--
T ss_pred EEEEEECCCCCEEEEEe------CCeEEEEEecccceEeeecccccc-----cccccccccccccCCCCCEEEEEECC--
Confidence 58999999999998532 236999999988764333211100 00000000001111224578899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||++|+.. .++.|.+||...++....+. .....+....|++++..++.... +.+.+++..+............
T Consensus 132 -~~~~l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--- 206 (388)
T d1erja_ 132 -DGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--- 206 (388)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---
T ss_pred -CCCcceecccccccccccccccccccccc-cccccccccccccccccccccccceeeeeeeccccccccccccccc---
Confidence 99999876 77899999999888763333 22334778999999999988775 4699999998776554433321
Q ss_pred ecCCcccceecccCCcceEE-ECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 215 THGLAEYIAQEEMDRKTGYW-WSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~-wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
..... +.+|++.|+..+.+ ..|++|+..
T Consensus 207 ---------------~~~~~~~~~~~~~l~~~~~d------------------------------------~~i~i~~~~ 235 (388)
T d1erja_ 207 ---------------VTTVAVSPGDGKYIAAGSLD------------------------------------RAVRVWDSE 235 (388)
T ss_dssp ---------------EEEEEECSTTCCEEEEEETT------------------------------------SCEEEEETT
T ss_pred ---------------cccccccCCCCCeEEEEcCC------------------------------------CeEEEeecc
Confidence 11233 45578877765533 237888988
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC-ceeecccccccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPL 372 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~ 372 (776)
+++....-.. .......+...+..+.|+|||+.|+..+ .+..|.+||+.++........... ............
T Consensus 236 ~~~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
T d1erja_ 236 TGFLVERLDS-ENESGTGHKDSVYSVVFTRDGQSVVSGS----LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310 (388)
T ss_dssp TCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEEC---------------CEEEEEECCSSC
T ss_pred cCccceeecc-ccccccCCCCCEEEEEECCCCCEEEEEE----CCCcEEEEeccCCccccccccccccceeeecccccce
Confidence 7765432111 0011234566789999999999877665 345689999877654322111100 000000000000
Q ss_pred CCCcccc-CCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEE-----eecCCCcEEEEEEccCCCceeeEEEE
Q 004067 373 DKGVTKY-SGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIV-----GVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 373 ~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~-----~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
-..+++. ++.++++...+| .|++||+.+++ ...+..+...+.... .|+||++.| ++++.++ .+.||++
T Consensus 311 v~~~~~s~~~~~l~sg~~dg--~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l-~s~s~Dg--~I~iW~~ 385 (388)
T d1erja_ 311 VLSVATTQNDEYILSGSKDR--GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDC--KARIWKY 385 (388)
T ss_dssp EEEEEECGGGCEEEEEETTS--EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTS--EEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCC--EEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEE-EEEeCCC--EEEEEee
Confidence 0001222 234666666677 89999987665 455666655555443 367888854 4555554 3889987
Q ss_pred E
Q 004067 446 K 446 (776)
Q Consensus 446 ~ 446 (776)
.
T Consensus 386 ~ 386 (388)
T d1erja_ 386 K 386 (388)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.61 E-value=1.2e-13 Score=139.75 Aligned_cols=244 Identities=9% Similarity=-0.004 Sum_probs=160.6
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE---eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL---VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~---l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
.++.++|||||++||..+. ...|.+||+.+++... +..+ ...+..+.|
T Consensus 60 ~v~~~~~sp~g~~latg~~-----dg~i~iwd~~~~~~~~~~~~~~~------------------------~~~v~~v~~ 110 (311)
T d1nr0a1 60 QTTVAKTSPSGYYCASGDV-----HGNVRIWDTTQTTHILKTTIPVF------------------------SGPVKDISW 110 (311)
T ss_dssp CEEEEEECTTSSEEEEEET-----TSEEEEEESSSTTCCEEEEEECS------------------------SSCEEEEEE
T ss_pred CEEEEEEeCCCCeEecccc-----CceEeeeeeeccccccccccccc------------------------cCccccccc
Confidence 3588999999999985544 2479999998876422 2221 246889999
Q ss_pred eecCCCceEEEEeC---CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEE-EE-CCcEEEEecCCCceeEEee
Q 004067 133 VKTSSKKKIIMVPL---PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAF-VR-DCELHVLNLLINEQRQLTH 207 (776)
Q Consensus 133 sp~~~dg~~l~~~~---~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~-~~-~~~l~~~~l~~g~~~~lt~ 207 (776)
+| ||+.|+... +..+.+|++++++....+..... .+..+.|+|||+.++. .+ ++.|.+|++.+++......
T Consensus 111 s~---d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~ 186 (311)
T d1nr0a1 111 DS---ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR-AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 186 (311)
T ss_dssp CT---TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSS-CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC
T ss_pred cc---ccccccccccccccccccccccccccccccccccc-ccccccccccceeeecccccccccccccccccccccccc
Confidence 99 999998873 34478899998877645544333 4778899999996444 33 3579999999887655433
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.... .+..+.|+|||+.|+....+ ..+
T Consensus 187 ~~~~-----------------~i~~v~~~p~~~~l~~~~~d------------------------------------~~v 213 (311)
T d1nr0a1 187 EHTK-----------------FVHSVRYNPDGSLFASTGGD------------------------------------GTI 213 (311)
T ss_dssp CCSS-----------------CEEEEEECTTSSEEEEEETT------------------------------------SCE
T ss_pred cccc-----------------cccccccCcccccccccccc------------------------------------ccc
Confidence 2211 14578899999988876543 237
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHD 367 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 367 (776)
.+||..+++.... ..........+...+..++|||||++|+..+ .+..|++||+++++...............
T Consensus 214 ~~~d~~~~~~~~~-~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs----~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~-- 286 (311)
T d1nr0a1 214 VLYNGVDGTKTGV-FEDDSLKNVAHSGSVFGLTWSPDGTKIASAS----ADKTIKIWNVATLKVEKTIPVGTRIEDQQ-- 286 (311)
T ss_dssp EEEETTTCCEEEE-CBCTTSSSCSSSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEEEEECCSSGGGCE--
T ss_pred ccccccccccccc-ccccccccccccccccccccCCCCCEEEEEe----CCCeEEEEECCCCcEEEEEECCCCccceE--
Confidence 8899888765432 1111112345667899999999999877654 34569999999988654333222111000
Q ss_pred ccccCCCCccccCCeEEEEeccCCceEEEEEeCC
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN 401 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~ 401 (776)
. .+.|+++.+ ++...+| .|.+||++
T Consensus 287 -~-----~~~~~~~~l-~s~s~dG--~i~~wd~d 311 (311)
T d1nr0a1 287 -L-----GIIWTKQAL-VSISANG--FINFVNPE 311 (311)
T ss_dssp -E-----EEEECSSCE-EEEETTC--CEEEEETT
T ss_pred -E-----EEEecCCEE-EEEECCC--EEEEEeCC
Confidence 0 013334444 4444667 78888864
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.59 E-value=4.5e-13 Score=139.32 Aligned_cols=254 Identities=14% Similarity=0.072 Sum_probs=152.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++..+|||||+.||+.+. ...|.+|+.++++..++...+ .+...+....|+|
T Consensus 10 It~~~~s~dg~~la~~~~-----~~~i~iw~~~~~~~~~~~~l~---------------------gH~~~V~~l~fsp-- 61 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPN-----NHEVHIYEKSGNKWVQVHELK---------------------EHNGQVTGVDWAP-- 61 (371)
T ss_dssp CCEEEECTTSSEEEEECS-----SSEEEEEEEETTEEEEEEEEE---------------------CCSSCEEEEEEET--
T ss_pred eEEEEECCCCCEEEEEeC-----CCEEEEEECCCCCEEEEEEec---------------------CCCCCEEEEEECC--
Confidence 488999999999997644 246999999988754443210 0124689999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecC-CCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLS-SSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
||++|+.. .++.|++||+.++.....+. ......+....|+|||+.++..+.+ .+.+++++.+...........
T Consensus 62 -~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~-- 138 (371)
T d1k8kc_ 62 -DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK-- 138 (371)
T ss_dssp -TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT--
T ss_pred -CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccc--
Confidence 99999865 77899999998876542221 1222347788999999999988764 577776665543222111000
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
+.. ..+..++|+|||+.|+..+.+. .+.+|+..
T Consensus 139 ---~~~--------~~v~~v~~~p~~~~l~s~s~D~------------------------------------~v~v~~~~ 171 (371)
T d1k8kc_ 139 ---PIR--------STVLSLDWHPNSVLLAAGSCDF------------------------------------KCRIFSAY 171 (371)
T ss_dssp ---TCC--------SCEEEEEECTTSSEEEEEETTS------------------------------------CEEEEECC
T ss_pred ---ccc--------cccccccccccccceeccccCc------------------------------------EEEEEeec
Confidence 000 1144688999999988766432 13344433
Q ss_pred CCceEEEEccc--------CCC--CCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCce
Q 004067 294 GGPVSWMDLQC--------GGT--DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSW 362 (776)
Q Consensus 294 ~~~~~~l~~~~--------~~~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~ 362 (776)
.+......... +.. ....+...+..++|+|||+.|+..+ .+..|.+||+.++....... +..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~ 247 (371)
T d1k8kc_ 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS----HDSTVCLADADKKMAVATLASETLPLL 247 (371)
T ss_dssp CTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE----TTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred cCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc----cCCcceEEeeecccceeeeecccccce
Confidence 22210000000 000 0134556788899999999887765 34569999998877543332 222211
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
.. .|++ ++.+ +++..++...++.++...+.
T Consensus 248 s~---~fs~--------d~~~-la~g~d~~~~~~~~~~~~~~ 277 (371)
T d1k8kc_ 248 AV---TFIT--------ESSL-VAAGHDCFPVLFTYDSAAGK 277 (371)
T ss_dssp EE---EEEE--------TTEE-EEEETTSSCEEEEEETTTTE
T ss_pred ee---eecC--------CCCE-EEEEcCCceEEEEeeCCCce
Confidence 11 1222 2333 34444566677777765544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=1.8e-13 Score=141.14 Aligned_cols=315 Identities=11% Similarity=0.039 Sum_probs=175.2
Q ss_pred eEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
+.||||++++......+....+||+||+++++...... ......+.||| ||+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-------------------------~g~~~~~a~Sp---Dg~ 59 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------------GGFLPNPVVAD---DGS 59 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------------ECSSCEEEECT---TSS
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-------------------------CCCCCceEEcC---CCC
Confidence 46999999965544333345689999999998644332 12334689999 999
Q ss_pred EEEEe-----------CCCcEEEEeCCCCccceecCCCC------CCCccCceeCCCCCEEEEEEC---CcEEEEecCCC
Q 004067 141 IIMVP-----------LPDGIYFQDLSCSKPELKLSSSS------CSPVIDPHLSSDGTMIAFVRD---CELHVLNLLIN 200 (776)
Q Consensus 141 ~l~~~-----------~~~~l~~~d~~~~~~~~~l~~~~------~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g 200 (776)
+|++. .++.|.+||+++++....+.... ........|||||+++++... ..+++++..++
T Consensus 60 ~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~ 139 (355)
T d2bbkh_ 60 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139 (355)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC
Confidence 99875 24679999999988763322111 111345789999999987763 35889999998
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+.......+....... ......+++++||+.+++...+...
T Consensus 140 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~dg~~~~v~~~~~~~----------------------------- 180 (355)
T d2bbkh_ 140 AFKRMLDVPDCYHIFP----------TAPDTFFMHCRDGSLAKVAFGTEGT----------------------------- 180 (355)
T ss_dssp EEEEEEECCSEEEEEE----------EETTEEEEEETTSCEEEEECCSSSC-----------------------------
T ss_pred cEeeEEecCCcceEee----------cCCcceEEEcCCCCEEEEEecCCCe-----------------------------
Confidence 7765443332111110 1113356789999987665432221
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
+.+.+..+.+. .....+..+.+++++..+++.. ....++++++.++....+......
T Consensus 181 ------~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 181 ------PEITHTEVFHP-------------EDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp ------CEEEECCCCSC-------------TTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESS
T ss_pred ------EEEEecccccc-------------eecceeeeccccCCCCeEEEec----CCCeEEEEecCCCcEEEEeccCCc
Confidence 12222222111 1111122345677776666654 344689999998887655332211
Q ss_pred ceeecccccccCCCC-c--cccCCeEEEEecc-------CCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEE
Q 004067 361 SWVNLHDCFTPLDKG-V--TKYSGGFIWASEK-------TGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVY 429 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~s~~-------~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~ 429 (776)
.-......+.|.+.. + +.++..+++.+.. .+...|++||+.+++. ..+.. ...+..+ .|||||+.++
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~-a~spDG~~~l 315 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSI-NVSQDEKPLL 315 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEE-EECCSSSCEE
T ss_pred ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEE-EEcCCCCeEE
Confidence 000001112222211 1 2233444444332 2346899999887654 34443 2334444 4999998755
Q ss_pred EEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCC
Q 004067 430 FTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHN 475 (776)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spd 475 (776)
|.+.... ..|+.+++. .|+ .+..|...+ +...+.+.++
T Consensus 316 ~v~~~~d---~~i~v~D~~-tg~----~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 316 YALSTGD---KTLYIHDAE-SGE----ELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEETTT---TEEEEEETT-TCC----EEEEECCCCSSCCEEECCCC
T ss_pred EEEECCC---CEEEEEECC-CCC----EEEEEeCcCCCccEEEeCCC
Confidence 5544322 245556653 343 556676443 3334444444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.57 E-value=1.2e-12 Score=131.10 Aligned_cols=266 Identities=12% Similarity=0.045 Sum_probs=170.4
Q ss_pred EEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--C
Q 004067 69 ITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--L 146 (776)
Q Consensus 69 ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~ 146 (776)
.+|+...+ ...|.+||+++++....... +.......||| ||++|++. .
T Consensus 3 ~~yV~~~~---~~~v~v~D~~t~~~~~~i~~------------------------g~~p~~va~sp---dG~~l~v~~~~ 52 (301)
T d1l0qa2 3 FAYIANSE---SDNISVIDVTSNKVTATIPV------------------------GSNPMGAVISP---DGTKVYVANAH 52 (301)
T ss_dssp EEEEEETT---TTEEEEEETTTTEEEEEEEC------------------------SSSEEEEEECT---TSSEEEEEEGG
T ss_pred EEEEEECC---CCEEEEEECCCCeEEEEEEC------------------------CCCceEEEEeC---CCCEEEEEECC
Confidence 46776533 25799999999986544432 23466789999 99999765 5
Q ss_pred CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCCCceecCCccccee
Q 004067 147 PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 147 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~ 224 (776)
++.|.+||+.+++....+.... ......|++||+.++..... .+.+++..+++..........
T Consensus 53 ~~~i~v~d~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 117 (301)
T d1l0qa2 53 SNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS------------- 117 (301)
T ss_dssp GTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS-------------
T ss_pred CCEEEEEECCCCceeeeeeccc--cccccccccccccccccccccceeeecccccceeeeecccccc-------------
Confidence 6789999999988773443332 35778999999998887654 588899998876555443321
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEccc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQC 304 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~ 304 (776)
.....|+|||+.+++..... ..+.+++..+++.....
T Consensus 118 -----~~~~~~~~dg~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~--- 154 (301)
T d1l0qa2 118 -----PLGLALSPDGKKLYVTNNGD-----------------------------------KTVSVINTVTKAVINTV--- 154 (301)
T ss_dssp -----EEEEEECTTSSEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEE---
T ss_pred -----ceEEEeecCCCeeeeeeccc-----------------------------------cceeeeeccccceeeec---
Confidence 23577999999887765321 24678888887755442
Q ss_pred CCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEE
Q 004067 305 GGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI 384 (776)
Q Consensus 305 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (776)
........+.|+||++.++.... . ...+..++............... .....+ ..++..++
T Consensus 155 ------~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~g~~~~ 215 (301)
T d1l0qa2 155 ------SVGRSPKGIAVTPDGTKVYVANF-D--SMSISVIDTVTNSVIDTVKVEAA---PSGIAV-------NPEGTKAY 215 (301)
T ss_dssp ------ECCSSEEEEEECTTSSEEEEEET-T--TTEEEEEETTTTEEEEEEECSSE---EEEEEE-------CTTSSEEE
T ss_pred ------ccCCCceEEEeeccccceeeecc-c--ccccccccccceeeeecccccCC---cceeec-------cccccccc
Confidence 22334567899999997766543 2 23466777776665544332211 011112 22334444
Q ss_pred EEeccCCceEEEEEeCCCceee-ccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 385 WASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 385 ~~s~~~g~~~l~~~~~~g~~~~-~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+.........|++||+.+++.. .+..+. .+..+ .|||||++||++...++. +.+ +++
T Consensus 216 v~~~~~~~~~v~v~D~~t~~~~~~~~~~~-~~~~v-a~spdg~~l~va~~~~~~--i~v--~D~ 273 (301)
T d1l0qa2 216 VTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI-AVTPDGKKVYVALSFCNT--VSV--IDT 273 (301)
T ss_dssp EEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE-EECTTSSEEEEEETTTTE--EEE--EET
T ss_pred cccccceeeeeeeeecCCCeEEEEEcCCC-CEEEE-EEeCCCCEEEEEECCCCe--EEE--EEC
Confidence 4443334458999998877653 344333 23444 499999998888766542 444 455
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=1.6e-13 Score=141.55 Aligned_cols=297 Identities=11% Similarity=0.088 Sum_probs=171.0
Q ss_pred EeecCCCceEEEEe------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-----------CCcEEE
Q 004067 132 WVKTSSKKKIIMVP------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-----------DCELHV 194 (776)
Q Consensus 132 ~sp~~~dg~~l~~~------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-----------~~~l~~ 194 (776)
.+| ||+++++. ...++|+||..+++....+..+ ....++|||||+.|++.. ++.|++
T Consensus 9 ~sp---dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g---~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 9 PAP---DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG---FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp CCC---CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC---SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eCC---CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC---CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 356 99999876 3446999999999877344332 234689999999988764 246999
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
||+++++.......+.......+ .....+.|+|||+++++......
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~----------~~~~~~~~s~dg~~~~v~~~~~~------------------------ 128 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVG----------TYPWMTSLTPDGKTLLFYQFSPA------------------------ 128 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBS----------CCGGGEEECTTSSEEEEEECSSS------------------------
T ss_pred EECCCCCEEEEEecCCcceeecC----------CCCceEEEecCCCeeEEecCCCC------------------------
Confidence 99999987654432221111110 11346789999999987653221
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
..+.+++..+++... +..+.... .........+.+++||+.+++...... .+...+..+....
T Consensus 129 ----------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~---~~~~~~~~~~~~~- 192 (355)
T d2bbkh_ 129 ----------PAVGVVDLEGKAFKRMLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEG---TPEITHTEVFHPE- 192 (355)
T ss_dssp ----------CEEEEEETTTTEEEEEEECCSEEE--EEEEETTEEEEEETTSCEEEEECCSSS---CCEEEECCCCSCT-
T ss_pred ----------ceeeeeecCCCcEeeEEecCCcce--EeecCCcceEEEcCCCCEEEEEecCCC---eEEEEecccccce-
Confidence 346788888877543 32210000 000011224678888886655433221 1233333322210
Q ss_pred EEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccC----------CeEE--EEEEee
Q 004067 354 ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG----------DWMV--EQIVGV 421 (776)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~----------~~~~--~~~~~~ 421 (776)
..... ....+ ...++.+++. ..++ .+++|++.++....+... .... .....+
T Consensus 193 -----~~~~~-~~~~~-------~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 256 (355)
T d2bbkh_ 193 -----DEFLI-NHPAY-------SQKAGRLVWP-TYTG--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256 (355)
T ss_dssp -----TSCBC-SCCEE-------ETTTTEEEEE-BTTS--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred -----eccee-eeccc-------cCCCCeEEEe-cCCC--eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEE
Confidence 00000 00001 1123334444 4455 799999887764433221 1111 112458
Q ss_pred cCCCcEEEEEEccCC-----CceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEE
Q 004067 422 NEASGQVYFTGTLDG-----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCS 496 (776)
Q Consensus 422 s~dg~~i~~~~~~~~-----~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~ 496 (776)
++|++.+|+...... .....|+.+++. .+. ....+..+.....+.|||||+.++++....+ ..|+++|
T Consensus 257 ~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~-t~~----~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d--~~i~v~D 329 (355)
T d2bbkh_ 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TGE----RLAKFEMGHEIDSINVSQDEKPLLYALSTGD--KTLYIHD 329 (355)
T ss_dssp ETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-TCC----EEEEEEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEE
T ss_pred eCCCCeEEEEeccCCceeecCCCCeEEEEeCC-CCc----EEEEecCCCCEEEEEEcCCCCeEEEEEECCC--CEEEEEE
Confidence 999999888765432 123467777763 232 4455554444567899999998887766544 5899999
Q ss_pred cCCCceeEeec
Q 004067 497 LQDGSLVLPLY 507 (776)
Q Consensus 497 ~~~~~~~~~l~ 507 (776)
..+++.++.+.
T Consensus 330 ~~tg~~~~~i~ 340 (355)
T d2bbkh_ 330 AESGEELRSVN 340 (355)
T ss_dssp TTTCCEEEEEC
T ss_pred CCCCCEEEEEe
Confidence 99999877664
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=1.6e-12 Score=130.77 Aligned_cols=286 Identities=13% Similarity=0.064 Sum_probs=181.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~ 202 (776)
..|....|+| ||+.|+.. .|+.|.+||+.+++....+..... .+..+.|+|++..++..... .+..++....+.
T Consensus 18 ~~I~~l~~sp---~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (317)
T d1vyhc1 18 SPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 93 (317)
T ss_dssp SCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-CEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred CCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-cEEEEeeeccccccccccccccccccccccccc
Confidence 3789999999 99999876 789999999999887745554443 47889999999999988765 456666665544
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
......... ......|+|+++.++....+
T Consensus 94 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~d---------------------------------- 122 (317)
T d1vyhc1 94 IRTMHGHDH-----------------NVSSVSIMPNGDHIVSASRD---------------------------------- 122 (317)
T ss_dssp EECCCCCSS-----------------CEEEEEECSSSSEEEEEETT----------------------------------
T ss_pred ccccccccc-----------------cceeeeccCCCceEEeeccC----------------------------------
Confidence 333221111 13467799999998876643
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC--
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-- 360 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-- 360 (776)
..+.+||+.+++....- ..+...+..+.|+||++.++... .+..|..|+..++...........
T Consensus 123 --~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~----~d~~v~~~~~~~~~~~~~~~~~~~~i 188 (317)
T d1vyhc1 123 --KTIKMWEVQTGYCVKTF--------TGHREWVRMVRPNQDGTLIASCS----NDQTVRVWVVATKECKAELREHRHVV 188 (317)
T ss_dssp --SEEEEEETTTCCEEEEE--------ECCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred --cceeEeecccceeeeEE--------ccCCCcceeeecccCCCEEEEEe----CCCeEEEEeeccceeeEEEecCCCCc
Confidence 34788999887754431 33556678899999999877665 344688999988776543332111
Q ss_pred ---ceeecccccc--c-CC--CCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEE
Q 004067 361 ---SWVNLHDCFT--P-LD--KGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFT 431 (776)
Q Consensus 361 ---~~~~~~~~~~--~-~~--~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~ 431 (776)
.|........ . .. ......++.++++...+| .|++|+...++. ..+..+...+.... ++++|+.|+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~s~ 265 (317)
T d1vyhc1 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK--TIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSC 265 (317)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS--EEEEEETTTTEEEEEEECCSSCEEEEE-ECSSSSCEEEE
T ss_pred eEEEEeeccccceeeccccceeeeeccCCceeEeccCCC--EEEEEECCCCcEEEEEeCCCCCEEEEE-ECCCCCEEEEE
Confidence 1110000000 0 00 000112233555555666 899999877653 45555555566654 99999966554
Q ss_pred EccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEE
Q 004067 432 GTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCS 496 (776)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~ 496 (776)
+ .++ .+.+|.+. .+. .+..+..+. .+..++|+||++.|+... .+ ..|.+||
T Consensus 266 ~-~dg--~i~iwd~~---~~~----~~~~~~~h~~~V~~~~~s~~~~~l~s~s-~D---g~i~iWd 317 (317)
T d1vyhc1 266 A-DDK--TLRVWDYK---NKR----CMKTLNAHEHFVTSLDFHKTAPYVVTGS-VD---QTVKVWE 317 (317)
T ss_dssp E-TTT--EEEEECCT---TSC----CCEEEECCSSCEEEEEECSSSSCEEEEE-TT---SEEEEEC
T ss_pred E-CCC--eEEEEECC---CCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC---CeEEEeC
Confidence 4 333 36677654 343 566666544 467889999999887543 22 2466654
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=4e-14 Score=139.96 Aligned_cols=244 Identities=15% Similarity=0.082 Sum_probs=147.9
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCC----CCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRY----GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 597 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~----~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r 597 (776)
+...+++.+. -|.++.+.+|.|+.+.. ..+++|+|+++||.+++.. .|... ....+.+.+.+++|++++..
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~---~w~~~-~~~~~~~~~~~~~vv~~~~~ 88 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPD---NASEK-AFWQFQADKYGFAIVFPDTS 88 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHH---HHHHH-SCHHHHHHHHTCEEEECCSS
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHH---HHHHh-hhHHHHHHHcCCceecCCCc
Confidence 4566777775 57889999999987532 2367999999999776543 34221 12345667789999998742
Q ss_pred CCC-----C--------Cchhh-hhhhh-hccCCccHHHH--HHHHHHHHHcCCC-------CCCcEEEEeechHHHHHH
Q 004067 598 GTA-----R--------RGLKF-EASIK-HNCGRIDAEDQ--LTGAEWLIKQGLA-------KVGHIGLYGWSYGGYLSA 653 (776)
Q Consensus 598 g~g-----~--------~~~~~-~~~~~-~~~~~~~~~D~--~~~i~~l~~~~~i-------d~~~i~l~G~S~GG~~a~ 653 (776)
... . ....+ ..... ...+...++++ .+.+.++.++..+ +.++.+|.|+||||+.|+
T Consensus 89 p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl 168 (299)
T d1pv1a_ 89 PRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAI 168 (299)
T ss_dssp CCSTTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHH
T ss_pred ccccccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHH
Confidence 210 0 00000 00000 00011112222 2233444443222 336899999999999999
Q ss_pred HHHhh--CCCceEEEEEcCCCCCccccccc--ccccccCCCCCCccchhcCChhhhhccCC----CcEEEEecCCCCccC
Q 004067 654 ITLAR--FPDVFQCAVSGAPVTSWDGYDTF--YTEKYMGLPSEDPVGYEYSSVMHHVHKMK----GKLLLVHGMIDENVH 725 (776)
Q Consensus 654 ~~a~~--~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~P~lii~G~~D~~v~ 725 (776)
.+|.+ +|++|.++++.+|..++...... ....+.+... ..+...++...+.+.+ .++++.+|.+|....
T Consensus 169 ~~al~~~~p~~f~~~~s~s~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D~~~~ 245 (299)
T d1pv1a_ 169 CGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEK---AQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLE 245 (299)
T ss_dssp HHHHHTGGGTCCSEEEEESCCCCSTTSHHHHHHHHHHSCC-------CGGGCHHHHGGGSCCCTTCCEEEECCTTCTTTT
T ss_pred HHHHHhcCCCceEEEeeccCcCCcccccchhhhhhhhcccch---hhhhhcCHHHHHHHhhccCCcceeEecCCCCcchh
Confidence 99986 48999999999998775432111 1112223222 2344445554444332 478888999998776
Q ss_pred hH-HHHHHHHHHHHCCCC--eEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 726 FR-HTARLINALVAARKP--YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 726 ~~-~~~~~~~~l~~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
.. ..+.+.+++++++.+ +++...||.+|.+.. ........++|+.++|
T Consensus 246 ~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~y---W~~~i~~~l~f~a~~l 296 (299)
T d1pv1a_ 246 EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNL 296 (299)
T ss_dssp TTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHHH---HHHHHHHHHHHHHHHT
T ss_pred hhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHHH---HHHHHHHHHHHHHHhc
Confidence 53 357788888877754 677778888897533 4556677788988875
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=2.7e-13 Score=133.27 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=138.8
Q ss_pred CCceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 522 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 522 ~~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
.++|.++++++ .|+.++..++.|.. |+|+++||..+... ...|.... ...+.++..+++|+++|.-..+
T Consensus 2 ~~~e~~~v~s~~~~r~~~~~v~~~~~--------pvlylLhG~~g~~~-~~~w~~~~-~~~~~~~~~~~iVV~p~g~~~~ 71 (267)
T d1r88a_ 2 APYENLMVPSPSMGRDIPVAFLAGGP--------HAVYLLDAFNAGPD-VSNWVTAG-NAMNTLAGKGISVVAPAGGAYS 71 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECCSS--------SEEEEECCSSCCSS-SCHHHHTS-CHHHHHTTSSSEEEEECCCTTS
T ss_pred CceEEEEEecccCCceeeEEEECCCC--------CEEEEcCCCCCCCC-cchhhhcc-HHHHHHhhCCeEEEEECCCCCc
Confidence 35788899876 57889988876532 89999999544321 12343322 2356778899999999953222
Q ss_pred CCchhhhhhhhhccCCccHHHH--HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQ--LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~--~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 678 (776)
...++... +....+++ .+.+.++.++..+++++++|+|+||||++|+.+++++|++|+++++++|..+....
T Consensus 72 -~y~~~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~ 145 (267)
T d1r88a_ 72 -MYTNWEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNT 145 (267)
T ss_dssp -TTSBCSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSH
T ss_pred -CCcccccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCc
Confidence 11111111 11122322 23566777777789999999999999999999999999999999999998765321
Q ss_pred cc-----ccc--------ccccCCCCCCccchhcCChhhhhccC---CCcEEEEecCCCCccCh-----------HHHHH
Q 004067 679 DT-----FYT--------EKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHF-----------RHTAR 731 (776)
Q Consensus 679 ~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~-----------~~~~~ 731 (776)
.. ... ....+.+ ....+.+.+|...+.++ ..++++.+|..|..+.. ..+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~ 223 (267)
T d1r88a_ 146 TTNGAIAAGMQQFGGVDTNGMWGAP--QLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRM 223 (267)
T ss_dssp HHHHHHHHHHHHHHCCCTHHHHCCG--GGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHH
T ss_pred cchhhhhhHHhhhcCCcHhhccCCc--chHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHH
Confidence 10 000 0001111 12334455565554443 45788999999866543 34556
Q ss_pred HHHHHHHCC-CCeEEEEecCCCCCC
Q 004067 732 LINALVAAR-KPYEILIFPDERHMP 755 (776)
Q Consensus 732 ~~~~l~~~~-~~~~~~~~~~~~H~~ 755 (776)
+.+++++.+ .++.+...++++|.+
T Consensus 224 ~~~~l~~~~g~~~~~~~~~~G~H~W 248 (267)
T d1r88a_ 224 FYNQYRSVGGHNGHFDFPASGDNGW 248 (267)
T ss_dssp HHHHHHHTTCCSEEEECCSSCCSSH
T ss_pred HHHHHHHcCCCcEEEEEcCCCeECh
Confidence 777777765 577887788889965
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.7e-14 Score=142.14 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=72.8
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhC--CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.||++||.+++.. .|..++..|.+. ||.|+++|+||+|.+..+.. ..++++...+..+.++.
T Consensus 4 PvvllHG~~~~~~-------~~~~~~~~l~~~~~~~~v~~~d~~G~g~S~~~~~---------~~~~~~~~~l~~~l~~l 67 (268)
T d1pjaa_ 4 PVIVVHGLFDSSY-------SFRHLLEYINETHPGTVVTVLDLFDGRESLRPLW---------EQVQGFREAVVPIMAKA 67 (268)
T ss_dssp CEEEECCTTCCGG-------GGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCHH---------HHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHH-------HHHHHHHHHHhhCCCeEEEEeCCCCCCCCCCccc---------cCHHHHHHHHHHHHhcc
Confidence 3567899876654 455567788764 89999999999998865422 12445555555555443
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCC-ceEEEEEcCCC
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPV 672 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~~v~~~~~ 672 (776)
. +++.++||||||.+|+.+|.++|+ +++.+++.++.
T Consensus 68 --~-~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~~ 104 (268)
T d1pjaa_ 68 --P-QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSP 104 (268)
T ss_dssp --T-TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCC
T ss_pred --C-CeEEEEccccHHHHHHHHHHHCCccccceEEEECCC
Confidence 3 689999999999999999999998 58888877653
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.53 E-value=2.8e-13 Score=137.44 Aligned_cols=201 Identities=19% Similarity=0.197 Sum_probs=124.0
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~ 616 (776)
+++..+.|.+. ++.| |||+||++++..........+..++++++++||.|+++|+||+|.|+..........+..
T Consensus 46 ~~v~~~~p~~~----~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~~~~~ 120 (318)
T d1qlwa_ 46 MYVRYQIPQRA----KRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGK 120 (318)
T ss_dssp EEEEEEEETTC----CSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHTTS
T ss_pred EEEEEECCCCC----CCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHHHHHH
Confidence 55555667653 4556 566899887754211111123345889999999999999999999986544332222221
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHH---------------------------------------------
Q 004067 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYL--------------------------------------------- 651 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~--------------------------------------------- 651 (776)
...+++ ........++.+.|||+||.+
T Consensus 121 ~~~~~l--------~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (318)
T d1qlwa_ 121 APASSL--------PDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIK 192 (318)
T ss_dssp SCGGGS--------CCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHH
T ss_pred HHHHHH--------HHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHHhh
Confidence 111110 000011223444555555433
Q ss_pred ---------------HHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEE
Q 004067 652 ---------------SAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLV 716 (776)
Q Consensus 652 ---------------a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii 716 (776)
....+...++.+++.+...+ +....+......+++|+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~P~Lii 247 (318)
T d1qlwa_ 193 LDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEP-------------------------GECPKPEDVKPLTSIPVLVV 247 (318)
T ss_dssp HTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESC-------------------------SCCCCGGGCGGGTTSCEEEE
T ss_pred hccccchhhhcccchhhhhhhhhhhHHHHHHhhhc-------------------------ccccchhhhhhhccCCEEEE
Confidence 22222222222222222111 11223445567788999999
Q ss_pred ecCCCCccCh-----HHHHHHHHHHHHCCCCeEEEEec-----CCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 717 HGMIDENVHF-----RHTARLINALVAARKPYEILIFP-----DERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 717 ~G~~D~~v~~-----~~~~~~~~~l~~~~~~~~~~~~~-----~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+|++|.++|. ..+..+++.+++++.+++++.+| |++|.+..+.+.+++.+.+.+||+++
T Consensus 248 ~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 248 FGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp ECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred ecCcCcccChhhhHHHHHHHHHHHHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 9999999984 45667888899999999999977 56798756667899999999999986
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.51 E-value=3.4e-14 Score=148.85 Aligned_cols=216 Identities=12% Similarity=-0.021 Sum_probs=142.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC------cEEEEECCCCCCCCchhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG------ILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G------~~v~~~d~rg~g~~~~~~ 606 (776)
+|..|++....... +..+.||++||.|++.. .|...+..|++.| |.|++||+||+|.|..+.
T Consensus 90 ~G~~iHf~h~~~~~-----~~~~pLlLlHG~P~s~~-------~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P~ 157 (394)
T d1qo7a_ 90 EGLTIHFAALFSER-----EDAVPIALLHGWPGSFV-------EFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPP 157 (394)
T ss_dssp TTEEEEEEEECCSC-----TTCEEEEEECCSSCCGG-------GGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCCC
T ss_pred CCEEEEEEEEeccC-----CCCCEEEEeccccccHH-------HHHHHHHhhccccCCcccceeeecccccccCCCCCCC
Confidence 89999998776544 35578999999988754 4566788898887 999999999999987532
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc--------
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-------- 678 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-------- 678 (776)
.. ..+...++...+..+.... ...+..++|||+||.++..+++.+++.+.++++..........
T Consensus 158 ~~------~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (394)
T d1qo7a_ 158 LD------KDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCAMRAPPEGPSIESLS 229 (394)
T ss_dssp SS------SCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCSCSSSCCGGGSC
T ss_pred CC------CccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeeecccccccccccccch
Confidence 11 1234566666666666653 3357889999999999999999999988888776543210000
Q ss_pred -------c-----------------------------------cccccccc---CCCCCCc-------------------
Q 004067 679 -------D-----------------------------------TFYTEKYM---GLPSEDP------------------- 694 (776)
Q Consensus 679 -------~-----------------------------------~~~~~~~~---~~~~~~~------------------- 694 (776)
. ....+.+. .......
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 309 (394)
T d1qo7a_ 230 AAEKEGIARMEKFMTDGLAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPRAI 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHTTCHHHHG
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccccchhhhHHHHHhhhcccccCCHHHHHHHHHHHhhccccchhH
Confidence 0 00000000 0000000
Q ss_pred cchh-c---------CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHH
Q 004067 695 VGYE-Y---------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 764 (776)
Q Consensus 695 ~~~~-~---------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~ 764 (776)
..|. . ........+|++|+++++|.+|...++. .+.+.+ ...+.+.+++++||.. ..+.++.+
T Consensus 310 ~~y~~~~~~~~~~~~~~~~~~~~~i~vPtlv~~g~~D~~~~p~---~~~~~~---~~~~~~~~~~~~GHf~-~~E~Pe~~ 382 (394)
T d1qo7a_ 310 HTYRETTPTASAPNGATMLQKELYIHKPFGFSFFPKDLCPVPR---SWIATT---GNLVFFRDHAEGGHFA-ALERPREL 382 (394)
T ss_dssp GGHHHHCC---------CTTTTTCEEEEEEEEECTBSSSCCCH---HHHGGG---EEEEEEEECSSCBSCH-HHHCHHHH
T ss_pred HHHHHHhhcccccchhhhhccCCcccCCeEEEEeCCCccccHH---HHHHhc---cCceEEEEcCCcCCch-HHhCHHHH
Confidence 0000 0 0011122356689999999999877664 233332 2235677899999966 77889999
Q ss_pred HHHHHHHHHHh
Q 004067 765 EERIWEFIERT 775 (776)
Q Consensus 765 ~~~~~~fl~~~ 775 (776)
.+.|.+||++.
T Consensus 383 a~~I~~Fl~~v 393 (394)
T d1qo7a_ 383 KTDLTAFVEQV 393 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999874
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.51 E-value=5.9e-12 Score=126.12 Aligned_cols=278 Identities=12% Similarity=0.053 Sum_probs=166.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR 203 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~ 203 (776)
..|....|+| ||++|+.. .++.|.+||+++++....+.......+..+.|+|||+.++...++.+.+++.......
T Consensus 13 ~~V~~l~~s~---dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~ 89 (299)
T d1nr0a2 13 KAITALSSSA---DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD 89 (299)
T ss_dssp SCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred CCcEEEEECC---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccc
Confidence 4789999999 99999875 7889999999998876344333334577899999999777666778888887654321
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.... ..... ......+.|+|||+.++....
T Consensus 90 ~~~~------~~~~~--------~~~~~~~~~s~~g~~~~~~~~------------------------------------ 119 (299)
T d1nr0a2 90 SSKA------VANKL--------SSQPLGLAVSADGDIAVAACY------------------------------------ 119 (299)
T ss_dssp TTSC------CEEEC--------SSCEEEEEECTTSSCEEEEES------------------------------------
T ss_pred cccc------ccccc--------ccccccccccccccccccccc------------------------------------
Confidence 1100 00000 011346789999997765442
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..+.+|+.. +...+.. ......++|+||++.++... .+..|.+||++++....+........+
T Consensus 120 -~~i~~~~~~--~~~~~~~----------~~~~~~~~~s~~~~~l~~g~----~dg~i~~~d~~~~~~~~~~~~~~~~~i 182 (299)
T d1nr0a2 120 -KHIAIYSHG--KLTEVPI----------SYNSSCVALSNDKQFVAVGG----QDSKVHVYKLSGASVSEVKTIVHPAEI 182 (299)
T ss_dssp -SEEEEEETT--EEEEEEC----------SSCEEEEEECTTSCEEEEEE----TTSEEEEEEEETTEEEEEEEEECSSCE
T ss_pred -ccccccccc--ccccccc----------cccccccccccccccccccc----ccccccccccccccccccccccccccc
Confidence 235666632 2232211 23456689999999877665 345699999988876554332212111
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee----ccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG----PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~----~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
. .-.|+| ++.++++...+| .|++|++..+... .+..+...+..+. |+|+|++|+..+. ++.
T Consensus 183 ~-~~~~~~--------~~~~l~~~~~d~--~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~s~~~~~l~sgs~-dg~-- 247 (299)
T d1nr0a2 183 T-SVAFSN--------NGAFLVATDQSR--KVIPYSVANNFELAHTNSWTFHTAKVACVS-WSPDNVRLATGSL-DNS-- 247 (299)
T ss_dssp E-EEEECT--------TSSEEEEEETTS--CEEEEEGGGTTEESCCCCCCCCSSCEEEEE-ECTTSSEEEEEET-TSC--
T ss_pred c-cccccc--------cccccccccccc--cccccccccccccccccccccccccccccc-ccccccceEEEcC-CCE--
Confidence 0 011222 234566666666 7899997655322 2333444566654 9999997665443 433
Q ss_pred eeEEEEEeCCCCCCccccceeec-C-CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLT-N-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+.+|.+.. +. ....... . ........+++++++|+... .+ ..|.+||+
T Consensus 248 i~iwd~~~---~~---~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s-~D---~~i~iWdl 297 (299)
T d1nr0a2 248 VIVWNMNK---PS---DHPIIIKGAHAMSSVNSVIWLNETTIVSAG-QD---SNIKFWNV 297 (299)
T ss_dssp EEEEETTC---TT---SCCEEETTSSTTSCEEEEEEEETTEEEEEE-TT---SCEEEEEC
T ss_pred EEEEECCC---CC---cceEEEecCCCCCcEEEEEECCCCEEEEEe-CC---CEEEEEec
Confidence 67776653 22 1122222 1 12334445667777776543 33 25888876
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=1.1e-13 Score=137.39 Aligned_cols=238 Identities=12% Similarity=0.071 Sum_probs=143.0
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
+++.+++.++ -|+.++..+.. ++.|+|+++||.++... ...|... ....+.+++.|++|++||....+.
T Consensus 5 ~v~~~~~~s~~~~r~i~~~~~~--------~~~p~lyllhG~~g~~d-~~~W~~~-~~~~~~~~~~~~ivV~P~~~~~~~ 74 (280)
T d1dqza_ 5 PVEYLQVPSASMGRDIKVQFQG--------GGPHAVYLLDGLRAQDD-YNGWDIN-TPAFEEYYQSGLSVIMPVGGQSSF 74 (280)
T ss_dssp CEEEEEEEETTTTEEEEEEEEC--------CSSSEEEECCCTTCCSS-SCHHHHH-SCHHHHHTTSSSEEEEECCCTTCT
T ss_pred EEEEEEEecccCCCcceEEeeC--------CCCCEEEECCCCCCCCc-cchhhhc-chHHHHHHhCCcEEEEECCCCCCc
Confidence 5667777765 46777777632 35699999999654322 1234321 123567889999999999643322
Q ss_pred Cchhhhhhh--hhccCCccHHH--HHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc
Q 004067 602 RGLKFEASI--KHNCGRIDAED--QLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG 677 (776)
Q Consensus 602 ~~~~~~~~~--~~~~~~~~~~D--~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~ 677 (776)
+.. +.... ....+....++ ..+.+.++.++..+|+++++|+|+||||++|+.+|+++|++|+++++++|..+...
T Consensus 75 ~~~-~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~ 153 (280)
T d1dqza_ 75 YTD-WYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSE 153 (280)
T ss_dssp TSB-CSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTS
T ss_pred Ccc-ccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCccc
Confidence 211 11000 00011111222 34556677677668999999999999999999999999999999999999876432
Q ss_pred ccc------cc-------cccccCCCCCCccchhcCChhhhhccC---CCcEEEEecCCCCccC--------------hH
Q 004067 678 YDT------FY-------TEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVH--------------FR 727 (776)
Q Consensus 678 ~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~--------------~~ 727 (776)
... .+ ....++.+ ....+...++...+.++ ..++++.+|..|...+ ..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~ 231 (280)
T d1dqza_ 154 SWWPTLIGLAMNDSGGYNANSMWGPS--SDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLR 231 (280)
T ss_dssp TTHHHHHHHHHHHTTSCCHHHHHCST--TSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHH
T ss_pred CcchhhhhhhHhhccCCCHhhccCCc--chhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHHH
Confidence 110 00 00111111 11334455665555444 3578888998875443 24
Q ss_pred HHHHHHHHHHHCCCCeEEEEe-cCCCCCCCC-CCcHHHHHHHHHHHHH
Q 004067 728 HTARLINALVAARKPYEILIF-PDERHMPRR-HRDRIYMEERIWEFIE 773 (776)
Q Consensus 728 ~~~~~~~~l~~~~~~~~~~~~-~~~~H~~~~-~~~~~~~~~~~~~fl~ 773 (776)
.+..+.+.+.+++.....+.+ ++++|.+.. .......+..+++||.
T Consensus 232 ~~~~~~~~l~~~g~~~~~~~~~~~GgH~W~~W~~~L~~~~p~~~~~l~ 279 (280)
T d1dqza_ 232 TNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSCCCSSHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEcCCCccCchHHHHHHHHHhHHHHHHhc
Confidence 566788888888865444444 567897522 2223344466666664
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.51 E-value=3.3e-14 Score=141.06 Aligned_cols=219 Identities=12% Similarity=0.019 Sum_probs=126.7
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHH----HhCCcEEEEECCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL----RSKGILVWKLDNR 597 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l----~~~G~~v~~~d~r 597 (776)
.+.+.++++..+| +..+++|.|++++ ..+++|+|+++||+++.......+.......+..+ ....+.|+.++.+
T Consensus 25 g~v~~~~~~~~~~-~r~~~vylP~~y~-~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 102 (273)
T d1wb4a1 25 GRIVKETYTGING-TKSLNVYLPYGYD-PNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFN 102 (273)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECTTCC-TTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSC
T ss_pred CeEEEEEEecCCC-eEEEEEEeCCCCC-CCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccC
Confidence 4678888988777 4699999999874 44789999999998765431111111111122222 2346899999988
Q ss_pred CCCCCchhhhhhhhhccCC-ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 598 GTARRGLKFEASIKHNCGR-IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 598 g~g~~~~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
+....+..+.......... .+..+....+..+..+..+|.++++|+|+||||++|+.+|+++|++|+++++.+|...+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~~ 182 (273)
T d1wb4a1 103 GGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYG 182 (273)
T ss_dssp STTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCBS
T ss_pred CCCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccccC
Confidence 7665554433222111100 000001111111122233688999999999999999999999999999999999986543
Q ss_pred cccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHH----------HCCCCeEEE
Q 004067 677 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALV----------AARKPYEIL 746 (776)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~----------~~~~~~~~~ 746 (776)
........... ... ..........++++..|..|... .......+.+. ..+..+.+.
T Consensus 183 ~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (273)
T d1wb4a1 183 NSPQDKANSIA-------EAI----NRSGLSKREYFVFAATGSEDIAY--ANMNPQIEAMKALPHFDYTSDFSKGNFYFL 249 (273)
T ss_dssp SSHHHHHHHHH-------HHH----HHHTCCTTSCEEEEEEETTCTTH--HHHHHHHHHHHTSTTCCBBSCTTTCCEEEE
T ss_pred CCcccccccch-------hhh----hhhhhcccceEEEEecCCCCccc--ccchhHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 22111000000 000 00011222235666677666543 33444444333 334578899
Q ss_pred EecCCCCCC
Q 004067 747 IFPDERHMP 755 (776)
Q Consensus 747 ~~~~~~H~~ 755 (776)
.+++++|.+
T Consensus 250 ~~~~ggH~w 258 (273)
T d1wb4a1 250 VAPGATHWW 258 (273)
T ss_dssp EETTCCSSH
T ss_pred EECCCccCH
Confidence 999999953
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.4e-11 Score=123.63 Aligned_cols=274 Identities=14% Similarity=0.096 Sum_probs=177.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.++|||||++|+-.+. + ..|.+||+.+++....... +...+....|+|
T Consensus 20 I~~l~~sp~~~~l~s~s~-D----g~i~iWd~~~~~~~~~~~~-----------------------h~~~V~~~~~~~-- 69 (317)
T d1vyhc1 20 VTRVIFHPVFSVMVSASE-D----ATIKVWDYETGDFERTLKG-----------------------HTDSVQDISFDH-- 69 (317)
T ss_dssp EEEEEECSSSSEEEEEES-S----SCEEEEETTTCCCCEEECC-----------------------CSSCEEEEEECT--
T ss_pred eEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCCEEEEEeC-----------------------CCCcEEEEeeec--
Confidence 588999999999986554 2 4699999998876444321 124688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
++..++.. .+..+..++....+.. ..............|+|+++.++.... +.+.++++.+++..........
T Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--- 144 (317)
T d1vyhc1 70 -SGKLLASCSADMTIKLWDFQGFECI-RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--- 144 (317)
T ss_dssp -TSSEEEEEETTSCCCEEETTSSCEE-ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS---
T ss_pred -ccccccccccccccccccccccccc-cccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC---
Confidence 99999876 4556777787776665 332222334677899999999988775 4689999998876544332211
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
....+.|+||++.|+....+ ..+++|+..+
T Consensus 145 --------------~~~~~~~~~~~~~l~~~~~d------------------------------------~~v~~~~~~~ 174 (317)
T d1vyhc1 145 --------------WVRMVRPNQDGTLIASCSND------------------------------------QTVRVWVVAT 174 (317)
T ss_dssp --------------CEEEEEECTTSSEEEEEETT------------------------------------SCEEEEETTT
T ss_pred --------------cceeeecccCCCEEEEEeCC------------------------------------CeEEEEeecc
Confidence 13467899999988876533 2367788777
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCe--------------------EEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI--------------------LTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--------------------~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
++....- ..+...+..+.|+|++. .++..+ .+..|.+||..+++....
T Consensus 175 ~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~~ 242 (317)
T d1vyhc1 175 KECKAEL--------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS----RDKTIKMWDVSTGMCLMT 242 (317)
T ss_dssp CCEEEEE--------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE----TTSEEEEEETTTTEEEEE
T ss_pred ceeeEEE--------ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc----CCCEEEEEECCCCcEEEE
Confidence 6654321 23444566667766653 222222 345689999998876443
Q ss_pred EE-eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 355 LV-EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 355 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.. +...... -.++| ++.++++...+| .|++||+.+++ ...+..+...+..+. |+++++.|+ ++
T Consensus 243 ~~~~~~~v~~---~~~~~--------~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~h~~~V~~~~-~s~~~~~l~-s~ 307 (317)
T d1vyhc1 243 LVGHDNWVRG---VLFHS--------GGKFILSCADDK--TLRVWDYKNKRCMKTLNAHEHFVTSLD-FHKTAPYVV-TG 307 (317)
T ss_dssp EECCSSCEEE---EEECS--------SSSCEEEEETTT--EEEEECCTTSCCCEEEECCSSCEEEEE-ECSSSSCEE-EE
T ss_pred EeCCCCCEEE---EEECC--------CCCEEEEEECCC--eEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCCEEE-EE
Confidence 33 2222111 11222 334566666677 89999987665 455655566677654 999999755 44
Q ss_pred ccCCCceeeEEE
Q 004067 433 TLDGPLESHLYC 444 (776)
Q Consensus 433 ~~~~~~~~~l~~ 444 (776)
..++ .+.||.
T Consensus 308 s~Dg--~i~iWd 317 (317)
T d1vyhc1 308 SVDQ--TVKVWE 317 (317)
T ss_dssp ETTS--EEEEEC
T ss_pred eCCC--eEEEeC
Confidence 4444 367763
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.47 E-value=5e-12 Score=129.26 Aligned_cols=305 Identities=9% Similarity=-0.075 Sum_probs=173.0
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
.|+||+||++++..+.. .+|.+||+++++.......+. ..+...+.|+| |
T Consensus 1 g~a~~~~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~----------------------~~~p~~l~~sp---D 50 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPD----------------------KFGPGTAMMAP---D 50 (346)
T ss_dssp CCCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSS----------------------CCSSCEEEECT---T
T ss_pred CccCCCCCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCC----------------------CCCcceEEECC---C
Confidence 36899999999976653 369999999998754333211 13566889999 9
Q ss_pred ceEEEEe--CCCcEEEEeCCCCccceecCCCCC-----CCccCceeCCCCCEEEEEEC-------------CcEEEEecC
Q 004067 139 KKIIMVP--LPDGIYFQDLSCSKPELKLSSSSC-----SPVIDPHLSSDGTMIAFVRD-------------CELHVLNLL 198 (776)
Q Consensus 139 g~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~-----~~~~~~~~SpDg~~la~~~~-------------~~l~~~~l~ 198 (776)
|+++++. .++.|++||+.+++....+..... .....+.|||||++++.... ..+.+++..
T Consensus 51 G~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (346)
T d1jmxb_ 51 NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130 (346)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred CCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc
Confidence 9998776 567899999999987633322211 12456899999999866542 236666666
Q ss_pred CCceeEEe---eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 199 INEQRQLT---HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 199 ~g~~~~lt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
+++..... ..+. ......+++|++.++. .
T Consensus 131 ~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~-~----------------------------- 162 (346)
T d1jmxb_ 131 DGLEAKPVRTFPMPR------------------QVYLMRAADDGSLYVA-G----------------------------- 162 (346)
T ss_dssp GGGGBCCSEEEECCS------------------SCCCEEECTTSCEEEE-S-----------------------------
T ss_pred cceeeeEEEeeeccC------------------ceEEEEecCCCEEEEe-C-----------------------------
Confidence 65432111 1111 0224456676654332 1
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
..+.+|+..+++....-. .........++|++..++...... . .+.+++.
T Consensus 163 ---------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~--------- 212 (346)
T d1jmxb_ 163 ---------PDIYKMDVKTGKYTVALP---------LRNWNRKGYSAPDVLYFWPHQSPR-H--EFSMLYT--------- 212 (346)
T ss_dssp ---------SSEEEECTTTCCEEEEEC---------STTCCCTTBCCCBCCCCCCCCCTT-C--EEEEEEE---------
T ss_pred ---------CcceEEEccCCCEEEEEe---------cCCCccceEEeccccEEEEEecCC-C--ceEeeee---------
Confidence 125677887776544311 112233467889887544332111 1 1222111
Q ss_pred EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec--cccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 356 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP--ITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~--lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
... +.. ....+... .....+..++...+.... +..+...+.... +++++..+++...
T Consensus 213 -~~~---------~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 271 (346)
T d1jmxb_ 213 -IAR---------FKD--------DKQDPATA--DLLYGYLSVDLKTGKTHTQEFADLTELYFTGL-RSPKDPNQIYGVL 271 (346)
T ss_dssp -EEE---------C---------------CCC--EEEEEEEEEETTTCCEEEEEEEECSSCEEEEE-ECSSCTTEEEEEE
T ss_pred -eee---------ecc--------CceeEeec--cCCceEEEEECCCCceEEEEeecccceeEEEE-EeCCCCEEEEecC
Confidence 000 000 00011111 122367788877665332 222333334443 6777776666543
Q ss_pred cCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
. .++.+++. .++ .+..+.....+..++|||||++|+..... ..|.++|..+++.+..+.
T Consensus 272 ~------~v~v~d~~-~~~----~~~~~~~~~~~~~va~s~DG~~l~v~~~d----~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 272 N------RLAKYDLK-QRK----LIKAANLDHTYYCVAFDKKGDKLYLGGTF----NDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp S------EEEEEETT-TTE----EEEEEECSSCCCEEEECSSSSCEEEESBS----SEEEEEETTTTEEEEEEE
T ss_pred C------eEEEEECC-CCc----EEEEEcCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECccCCEEEEEE
Confidence 2 34445552 232 34444444456789999999988765432 479999999998877664
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.44 E-value=9.6e-12 Score=131.52 Aligned_cols=153 Identities=12% Similarity=-0.062 Sum_probs=97.0
Q ss_pred CCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 53 GYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 53 ~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
.|..+..++|||||++|+..+. + ..|.+||+++++...+...+. ..+...+.+
T Consensus 60 ~g~~~~~v~fSpDG~~l~~~s~-d----g~v~~~d~~t~~~~~~~~i~~----------------------~~~~~~~~~ 112 (432)
T d1qksa2 60 TGYAVHISRLSASGRYLFVIGR-D----GKVNMIDLWMKEPTTVAEIKI----------------------GSEARSIET 112 (432)
T ss_dssp CSSCEEEEEECTTSCEEEEEET-T----SEEEEEETTSSSCCEEEEEEC----------------------CSEEEEEEE
T ss_pred CCCCeeEEEECCCCCEEEEEcC-C----CCEEEEEeeCCCceEEEEEec----------------------CCCCCCeEE
Confidence 3455789999999999975543 3 369999999887543332111 012223333
Q ss_pred ee-cCCCceEEEEe--CCCcEEEEeCCCCccceecCCC----------CCCCccCceeCCCCCEEEEEEC--CcEEEEec
Q 004067 133 VK-TSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSS----------SCSPVIDPHLSSDGTMIAFVRD--CELHVLNL 197 (776)
Q Consensus 133 sp-~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~----------~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l 197 (776)
+| .||||++|+.. .++.|.+||.++++....+... ...+.....+||||+.+++... +.+++++.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 32 23399998765 5788999999998876222110 1112334578999998777664 47999999
Q ss_pred CCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEec
Q 004067 198 LINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVD 248 (776)
Q Consensus 198 ~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 248 (776)
.+++..++..-+.+ . ....++++|||++++....+
T Consensus 193 ~~~~~~~~~~i~~g------~----------~~~~~~~spdg~~~~va~~~ 227 (432)
T d1qksa2 193 TDLNNLKTTEISAE------R----------FLHDGGLDGSHRYFITAANA 227 (432)
T ss_dssp TCSSEEEEEEEECC------S----------SEEEEEECTTSCEEEEEEGG
T ss_pred cCCCcceEEEEccc------C----------ccccceECCCCCEEEEeccc
Confidence 88765544331110 0 03367899999988877643
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=2.5e-12 Score=129.00 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=151.7
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc-----ccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC-----DSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~-----~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+.+|.+..|.-.+. .+-++||++|+..++.... ..|....-.--..+....|.|+++|+.|++.+......
T Consensus 23 ~~~laY~t~G~ln~----~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs~p~s 98 (357)
T d2b61a1 23 YINVAYQTYGTLND----EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSS 98 (357)
T ss_dssp SEEEEEEEESCCCT----TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTS
T ss_pred CceEEEEeecccCC----CCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccCCcCC
Confidence 35677888875443 3458999999976664432 12311111112345567899999999997643221111
Q ss_pred --h-----hhhccCCccHHHHHHHHHHHHHcCCCCCCcE-EEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC------
Q 004067 609 --S-----IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS------ 674 (776)
Q Consensus 609 --~-----~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i-~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~------ 674 (776)
+ ....+....+.|++++-..|+++-.| .++ .++|.||||+.|+.+|.++|++++.+|++++..-
T Consensus 99 ~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI--~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s~~~~ 176 (357)
T d2b61a1 99 INPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGI--SHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAI 176 (357)
T ss_dssp BCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHH
T ss_pred CCCCCCCCCCcccccchhHHHHHHHHHHHHHhCc--ceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccchhHH
Confidence 1 11234556799999999988877544 477 6889999999999999999999999888765421
Q ss_pred ---------------ccc--c-c----------------------ccccccccCCC---------CCCccch--------
Q 004067 675 ---------------WDG--Y-D----------------------TFYTEKYMGLP---------SEDPVGY-------- 697 (776)
Q Consensus 675 ---------------~~~--~-~----------------------~~~~~~~~~~~---------~~~~~~~-------- 697 (776)
|.. | . ..+.+++.... ....+.|
T Consensus 177 ~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~g~kf 256 (357)
T d2b61a1 177 GFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKF 256 (357)
T ss_dssp HHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHHHHHH
Confidence 100 0 0 00001110000 0000000
Q ss_pred -hcC----------------------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCC-CC
Q 004067 698 -EYS----------------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE-RH 753 (776)
Q Consensus 698 -~~~----------------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~-~H 753 (776)
... +....+++|++|+|+|..+.|..+|+++.+++++.|...++++++++++.. ||
T Consensus 257 ~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I~S~~GH 336 (357)
T d2b61a1 257 LERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGH 336 (357)
T ss_dssp HTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGG
T ss_pred HhhCCHHHHHHHHHHhhhcccccccccHHHHHhhcCCCEEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEECCCCCc
Confidence 001 122236889999999999999999999999999999999999999999864 78
Q ss_pred CCCCCCcHHHHHHHHHHHHHH
Q 004067 754 MPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 754 ~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.- .....+.+.+.|.+||..
T Consensus 337 da-fL~e~~~~~~~I~~fL~~ 356 (357)
T d2b61a1 337 DA-FLVDYDQFEKRIRDGLAG 356 (357)
T ss_dssp GH-HHHCHHHHHHHHHHHHHT
T ss_pred cc-cCcCHHHHHHHHHHHHcc
Confidence 53 223456778888888863
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.44 E-value=4.8e-12 Score=127.13 Aligned_cols=233 Identities=14% Similarity=0.096 Sum_probs=152.7
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc---------ccccccchhhhHHHHhCCcEEEEECCCCCCCCchh
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC---------DSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 605 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~---------~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~ 605 (776)
.+|.+..|...+. .+-++||++|+..++..+. ..|....-.--..+....|-|+++|..|.+.+...
T Consensus 27 ~~l~Y~t~G~ln~----~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~~ss~ 102 (362)
T d2pl5a1 27 VVIAYETYGTLSS----SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSG 102 (362)
T ss_dssp EEEEEEEEECCCT----TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSS
T ss_pred ceEEEEeeeccCC----CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcccccC
Confidence 5677777775443 3458999999977664321 23422221123345677899999999998754322
Q ss_pred hhhhh-------hhccCCccHHHHHHHHHHHHHcCCCCCCcEE-EEeechHHHHHHHHHhhCCCceEEEEEcCCCCC---
Q 004067 606 FEASI-------KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS--- 674 (776)
Q Consensus 606 ~~~~~-------~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~--- 674 (776)
..... -.......+.|++++-..|+++-.|. ++. |+|.||||+.|+.+|.++|+.++.+|++++..-
T Consensus 103 ~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI~--~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~ 180 (362)
T d2pl5a1 103 PLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGIE--KLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSA 180 (362)
T ss_dssp TTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTCS--SEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCH
T ss_pred ccccccccccccCcCCccchhHHHHHHHHHHHHHhCcC--eeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCH
Confidence 11111 12234457889999988888876554 544 889999999999999999999999998875431
Q ss_pred ------------------ccc--cc----------------------ccccccccCCC--------CCCccchh------
Q 004067 675 ------------------WDG--YD----------------------TFYTEKYMGLP--------SEDPVGYE------ 698 (776)
Q Consensus 675 ------------------~~~--~~----------------------~~~~~~~~~~~--------~~~~~~~~------ 698 (776)
|.. |. ..+.+++.... ....+.|.
T Consensus 181 ~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k 260 (362)
T d2pl5a1 181 MQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGES 260 (362)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHHHHhcCCccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 100 00 00001110000 00000110
Q ss_pred ---cC---------------C------hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEec-CCCC
Q 004067 699 ---YS---------------S------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP-DERH 753 (776)
Q Consensus 699 ---~~---------------~------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~~~H 753 (776)
.. + ....+++|++|+|+|..+.|..+|++..+++++.+..++.++++++++ ..||
T Consensus 261 ~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~eI~S~~GH 340 (362)
T d2pl5a1 261 FVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEGH 340 (362)
T ss_dssp SSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBSS
T ss_pred HHhcCCHHHHHHHHhhhhcccccccccHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCc
Confidence 01 1 112367899999999999999999999999999999999999998886 4688
Q ss_pred CCCCCCcHHHHHHHHHHHHHH
Q 004067 754 MPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 754 ~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.- .....+++.+.|.+||+.
T Consensus 341 da-FL~e~~~~~~~I~~FL~~ 360 (362)
T d2pl5a1 341 DS-FLLKNPKQIEILKGFLEN 360 (362)
T ss_dssp GG-GGSCCHHHHHHHHHHHHC
T ss_pred ch-hccCHHHHHHHHHHHHcC
Confidence 64 344567788899999863
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=1e-11 Score=126.12 Aligned_cols=284 Identities=12% Similarity=0.071 Sum_probs=166.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce---EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ---ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
++.++|+|+|+.|+|..... ..|+.++....+. ..+..|. ...+....|+
T Consensus 20 ~t~l~~~~~~~~la~~~~~~----~~i~~~~~~~~~~~~~~~~~gh~-----------------------~~~v~~v~fs 72 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKS----AFVRCLDDGDSKVPPVVQFTGHG-----------------------SSVVTTVKFS 72 (325)
T ss_dssp CCCCEEETTTTEEEEEETTE----EEEEECCSSCCSSCSEEEECTTT-----------------------TSCEEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCC----EEEEEEeCCCCCccceEEEeCCC-----------------------CCCEEEEEEe
Confidence 47889999999999975432 2344455433322 2232211 1358889999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCccceecC-------CCCCCCccCceeCCCCCEEEEEECC---cEEEEecCCCce
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLS-------SSSCSPVIDPHLSSDGTMIAFVRDC---ELHVLNLLINEQ 202 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~-------~~~~~~~~~~~~SpDg~~la~~~~~---~l~~~~l~~g~~ 202 (776)
| ..||+.|+.. .++.|.+||+..++....+. ......+..+.|+|||+.|+....+ .+.+++.++++.
T Consensus 73 P-~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (325)
T d1pgua1 73 P-IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS 151 (325)
T ss_dssp S-STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred e-CCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc
Confidence 7 2245677754 78999999987655331111 0112236789999999999998753 478888887765
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
........ ..+..+.|+|+++.++.....+
T Consensus 152 ~~~~~~h~-----------------~~v~~~~~~~~~~~~~~~~~~d--------------------------------- 181 (325)
T d1pgua1 152 LGEVSGHS-----------------QRINACHLKQSRPMRSMTVGDD--------------------------------- 181 (325)
T ss_dssp EEECCSCS-----------------SCEEEEEECSSSSCEEEEEETT---------------------------------
T ss_pred ceeeeecc-----------------cccccccccccccceEEEeecc---------------------------------
Confidence 43322211 1145688999998766544222
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCC-eEEEEEEeecCceEEEEEEECCCCceEEEEEe-ccC
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN-ILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELD 360 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~ 360 (776)
..+.+||..+.+...-... ...+...+..++|+||+ +.++... .+..|.+||+.+++....... ...
T Consensus 182 --~~v~~~d~~~~~~~~~~~~-----~~~~~~~v~~v~~~pd~~~~l~s~~----~d~~i~iwd~~~~~~~~~l~~~~~~ 250 (325)
T d1pgua1 182 --GSVVFYQGPPFKFSASDRT-----HHKQGSFVRDVEFSPDSGEFVITVG----SDRKISCFDGKSGEFLKYIEDDQEP 250 (325)
T ss_dssp --TEEEEEETTTBEEEEEECS-----SSCTTCCEEEEEECSTTCCEEEEEE----TTCCEEEEETTTCCEEEECCBTTBC
T ss_pred --cccccccccccccceeccc-----ccCCCCccEEeeeccccceeccccc----cccceeeeeeccccccccccccccc
Confidence 3467888877665433221 13456678999999985 4555544 345699999998886544332 222
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeE----EEEEEeecCCCcEEEEEEccC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWM----VEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~----~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.. ...|+. .+.++..+++...++ .|.+||+.+++. +.++.+... ...+ .++.++ . +++.+.+
T Consensus 251 v~---~~~~s~-----~~~dg~~l~s~s~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-l~s~s~d 317 (325)
T d1pgua1 251 VQ---GGIFAL-----SWLDSQKFATVGADA--TIRVWDVTTSKCVQKWTLDKQQLGNQQVGV-VATGNG-R-IISLSLD 317 (325)
T ss_dssp CC---SCEEEE-----EESSSSEEEEEETTS--EEEEEETTTTEEEEEEECCTTCGGGCEEEE-EEEETT-E-EEEEETT
T ss_pred cc---cceeee-----eccCCCEEEEEeCCC--eEEEEECCCCCEEEEEEecCCcccCeEEEE-EECCCC-E-EEEEECC
Confidence 11 111221 233455666666677 799999887654 334433211 1122 133333 3 4555555
Q ss_pred CCceeeEEE
Q 004067 436 GPLESHLYC 444 (776)
Q Consensus 436 ~~~~~~l~~ 444 (776)
+. +.+|.
T Consensus 318 g~--i~vwd 324 (325)
T d1pgua1 318 GT--LNFYE 324 (325)
T ss_dssp SC--EEEEE
T ss_pred CE--EEEEE
Confidence 43 67775
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.43 E-value=2.9e-11 Score=127.89 Aligned_cols=82 Identities=12% Similarity=-0.045 Sum_probs=54.5
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
|..+.+++|||||++|+-.+. + ..|.+||+++++...+...+... .+..-+.+..||
T Consensus 61 g~~~~~vafSPDGk~l~~~~~-d----~~v~vwd~~t~~~~~~~~i~~~~------------------~~~~~~~s~~~s 117 (426)
T d1hzua2 61 GYAVHISRMSASGRYLLVIGR-D----ARIDMIDLWAKEPTKVAEIKIGI------------------EARSVESSKFKG 117 (426)
T ss_dssp CSSEEEEEECTTSCEEEEEET-T----SEEEEEETTSSSCEEEEEEECCS------------------EEEEEEECCSTT
T ss_pred CCCeeEEEECCCCCEEEEEeC-C----CCEEEEEccCCceeEEEEEeCCC------------------CCcceEEeeeec
Confidence 445689999999999864433 3 36999999998754433211000 000112345566
Q ss_pred ecCCCceEEEEe--CCCcEEEEeCCCCccc
Q 004067 134 KTSSKKKIIMVP--LPDGIYFQDLSCSKPE 161 (776)
Q Consensus 134 p~~~dg~~l~~~--~~~~l~~~d~~~~~~~ 161 (776)
| ||++|+.. .+..+.+||..+++..
T Consensus 118 p---DG~~l~v~~~~~~~v~i~d~~~~~~~ 144 (426)
T d1hzua2 118 Y---EDRYTIAGAYWPPQFAIMDGETLEPK 144 (426)
T ss_dssp C---TTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred C---CCCEEEEeecCCCeEEEEcCCcccee
Confidence 7 99998876 5678999999998876
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=6e-11 Score=123.45 Aligned_cols=283 Identities=12% Similarity=0.008 Sum_probs=167.0
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCC-----------------CCCCccCceeCCCCCEEEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSS-----------------SCSPVIDPHLSSDGTMIAFV 187 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~-----------------~~~~~~~~~~SpDg~~la~~ 187 (776)
..|....||| ||++|+...++.|.+||+.+++....+... ....+..++|||||+.|+..
T Consensus 63 ~~V~~l~fs~---dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 63 SVVCCVKFSN---DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp SCCCEEEECT---TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CcEEEEEECC---CCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence 4688999999 999999988899999999887765233211 11125568999999999887
Q ss_pred EC-CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCC
Q 004067 188 RD-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVG 266 (776)
Q Consensus 188 ~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (776)
+. +.|.+++...++.......... .+..+.|++++..++....+
T Consensus 140 ~~dg~v~i~~~~~~~~~~~~~~h~~-----------------~v~~~~~~~~~~~~~~~~~~------------------ 184 (388)
T d1erja_ 140 AEDRLIRIWDIENRKIVMILQGHEQ-----------------DIYSLDYFPSGDKLVSGSGD------------------ 184 (388)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSS-----------------CEEEEEECTTSSEEEEEETT------------------
T ss_pred ccccccccccccccccccccccccc-----------------cccccccccccccccccccc------------------
Confidence 65 5799999998876554432221 14467899999988776532
Q ss_pred CCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec-cCCeEEEEEEeecCceEEEEEEE
Q 004067 267 SEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~l~~~d 345 (776)
..+.+||..+........ .........|+ +|++.++..+ .+..|.+||
T Consensus 185 ------------------~~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~----~d~~i~i~~ 233 (388)
T d1erja_ 185 ------------------RTVRIWDLRTGQCSLTLS---------IEDGVTTVAVSPGDGKYIAAGS----LDRAVRVWD 233 (388)
T ss_dssp ------------------SEEEEEETTTTEEEEEEE---------CSSCEEEEEECSTTCCEEEEEE----TTSCEEEEE
T ss_pred ------------------eeeeeeeccccccccccc---------cccccccccccCCCCCeEEEEc----CCCeEEEee
Confidence 357899998877655422 22223344444 4787776655 344589999
Q ss_pred CCCCceEEEEEeccCceeecccccccCCCCcccc-CCeEEEEeccCCceEEEEEeCCCceeec-------------cccC
Q 004067 346 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCLGP-------------ITEG 411 (776)
Q Consensus 346 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~g~~~~~-------------lt~~ 411 (776)
..++.................... ..+.+. ++..+++...+| .|.+|++..+.... ...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~h~~~v----~~l~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
T d1erja_ 234 SETGFLVERLDSENESGTGHKDSV----YSVVFTRDGQSVVSGSLDR--SVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307 (388)
T ss_dssp TTTCCEEEEEC------CCCSSCE----EEEEECTTSSEEEEEETTS--EEEEEEC---------------CEEEEEECC
T ss_pred cccCccceeeccccccccCCCCCE----EEEEECCCCCEEEEEECCC--cEEEEeccCCccccccccccccceeeecccc
Confidence 988875433221111000000000 001222 233555666667 78888876543221 1112
Q ss_pred CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEE------EEcCCcCEEEEEee
Q 004067 412 DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVA------VLDHNMRNFVDFHD 484 (776)
Q Consensus 412 ~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~------~~spdg~~l~~~~~ 484 (776)
...+... .|+++|++|+.. ..++ .+.+|.+. .+. .+..+..+.+ +..+ .|+||++.|+...
T Consensus 308 ~~~v~~~-~~s~~~~~l~sg-~~dg--~i~vwd~~---~~~----~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s- 375 (388)
T d1erja_ 308 KDFVLSV-ATTQNDEYILSG-SKDR--GVLFWDKK---SGN----PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS- 375 (388)
T ss_dssp SSCEEEE-EECGGGCEEEEE-ETTS--EEEEEETT---TCC----EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE-
T ss_pred cceEEEE-EECCCCCEEEEE-eCCC--EEEEEECC---CCc----EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe-
Confidence 2334444 499999876544 4443 26666543 343 4556665543 4444 3678998777543
Q ss_pred CCCCCCEEEEEEc
Q 004067 485 SLDSPPRILLCSL 497 (776)
Q Consensus 485 ~~~~~~~i~~~~~ 497 (776)
.+ ..|.+|++
T Consensus 376 ~D---g~I~iW~~ 385 (388)
T d1erja_ 376 GD---CKARIWKY 385 (388)
T ss_dssp TT---SEEEEEEE
T ss_pred CC---CEEEEEee
Confidence 32 36888875
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.42 E-value=6.6e-11 Score=120.15 Aligned_cols=291 Identities=11% Similarity=-0.048 Sum_probs=167.2
Q ss_pred eCCCcEEEEeCCCCccceecCCC-CCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCccc
Q 004067 145 PLPDGIYFQDLSCSKPELKLSSS-SCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEY 221 (776)
Q Consensus 145 ~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~ 221 (776)
..+++|++||+++++....+... .......++|||||++++.... +.|++||+.+|+...-..........
T Consensus 8 ~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~------ 81 (337)
T d1pbyb_ 8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV------ 81 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE------
T ss_pred cCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc------
Confidence 36789999999999877344322 2223578999999998866653 56999999999875433322111000
Q ss_pred ceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEE
Q 004067 222 IAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMD 301 (776)
Q Consensus 222 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~ 301 (776)
.....++|||||+.++.............. .....+.++|..+++....-
T Consensus 82 ------~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~------------------------~~~~~~~~~d~~~~~~~~~~ 131 (337)
T d1pbyb_ 82 ------KSLFGAALSPDGKTLAIYESPVRLELTHFE------------------------VQPTRVALYDAETLSRRKAF 131 (337)
T ss_dssp ------ECTTCEEECTTSSEEEEEEEEEEECSSCEE------------------------ECCCEEEEEETTTTEEEEEE
T ss_pred ------cceeeEEEcCCCcEEEEeecCCcceeeecc------------------------ccccceeeccccCCeEEEec
Confidence 113478899999998876543221100000 01145789999998865542
Q ss_pred cccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCc--c-c
Q 004067 302 LQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGV--T-K 378 (776)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~-~ 378 (776)
. .......+.|||||+.++... . .+..||+.+++........... ....+.+....+ . .
T Consensus 132 ~---------~~~~~~~~~~s~dg~~l~~~~----~--~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 193 (337)
T d1pbyb_ 132 E---------APRQITMLAWARDGSKLYGLG----R--DLHVMDPEAGTLVEDKPIQSWE---AETYAQPDVLAVWNQHE 193 (337)
T ss_dssp E---------CCSSCCCEEECTTSSCEEEES----S--SEEEEETTTTEEEEEECSTTTT---TTTBCCCBCCCCCCCCT
T ss_pred c---------ccCCceEEEEcCCCCEEEEEc----C--CcceeeeecCcEEEEeecCCcc---ccceecCCcceeecccc
Confidence 2 222344689999999776542 2 2567899888765443322110 001111111110 0 0
Q ss_pred cCCeE--EEEe-cc--------CCceEEEEEeCCCceeecc--ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 379 YSGGF--IWAS-EK--------TGFRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 379 ~~~~~--~~~s-~~--------~g~~~l~~~~~~g~~~~~l--t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
....+ .... .. .....+++++...++.... ......... ..+++++++++.... .+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~i~v~ 265 (337)
T d1pbyb_ 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS-TAVNPAKTRAFGAYN-------VLESF 265 (337)
T ss_dssp TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE-EEECTTSSEEEEEES-------EEEEE
T ss_pred ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEE-EEecccceEEEEccc-------cEEEE
Confidence 11111 1111 11 1124788888777654332 222222232 347899887765531 34445
Q ss_pred EeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 446 KLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 446 ~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
++. .+. .+..+.....+..++|||||++|+..... ..|.++|..+++.+..+
T Consensus 266 d~~-~~~----~~~~~~~~~~~~~~~~s~dG~~l~v~~~~----~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 266 DLE-KNA----SIKRVPLPHSYYSVNVSTDGSTVWLGGAL----GDLAAYDAETLEKKGQV 317 (337)
T ss_dssp ETT-TTE----EEEEEECSSCCCEEEECTTSCEEEEESBS----SEEEEEETTTCCEEEEE
T ss_pred ECC-CCc----EEEEEcCCCCEEEEEECCCCCEEEEEeCC----CcEEEEECCCCcEEEEE
Confidence 553 232 45555555566789999999988765322 46999999999887766
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.41 E-value=1.1e-10 Score=118.54 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=164.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|||||++|+-.+. ...|.+||+.+++........ ...+....|+|
T Consensus 58 I~~l~~s~~~~~l~sgs~-----Dg~v~iWd~~~~~~~~~~~~~-----------------------~~~v~~v~~~~-- 107 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQ-----DGKLIIWDSYTTNKVHAIPLR-----------------------SSWVMTCAYAP-- 107 (340)
T ss_dssp EEEEEECTTSSEEEEEET-----TTEEEEEETTTTEEEEEEECS-----------------------CSCEEEEEECT--
T ss_pred EEEEEECCCCCEEEEEEC-----CCceeeeecccceeEEEEecc-----------------------cccEEeeEeec--
Confidence 578999999999986544 246999999988764443211 24688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccce----ecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPEL----KLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~----~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~ 210 (776)
||+.++.. .++.+..++........ .+.... . .........+..+..... .....+...............
T Consensus 108 -~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (340)
T d1tbga_ 108 -SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-G-YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp -TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS-S-CEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCS
T ss_pred -cceeeeeecccceeecccccccccccccceeccccc-c-cccccccccccccccccccccccccccccccccccccccc
Confidence 99999876 67788888876554330 121111 1 111222223333333333 234444444333322222211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
. .+....+.+++..++....+ ..+.+|
T Consensus 185 ~-----------------~~~~~~~~~~~~~~~~~~~d------------------------------------~~v~i~ 211 (340)
T d1tbga_ 185 G-----------------DVMSLSLAPDTRLFVSGACD------------------------------------ASAKLW 211 (340)
T ss_dssp S-----------------CEEEEEECTTSSEEEEEETT------------------------------------TEEEEE
T ss_pred e-----------------eEeeeccccccceeEEeecC------------------------------------ceEEEE
Confidence 1 02245577777766654422 357899
Q ss_pred EcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccc
Q 004067 291 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFT 370 (776)
Q Consensus 291 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 370 (776)
|+.+++....- ..+...+..++|+|||+.++..+ .+..|.+||+....................-.|+
T Consensus 212 d~~~~~~~~~~--------~~h~~~i~~v~~~p~~~~l~s~s----~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 279 (340)
T d1tbga_ 212 DVREGMCRQTF--------TGHESDINAICFFPNGNAFATGS----DDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred ECCCCcEEEEE--------eCCCCCeEEEEECCCCCEEEEEe----CCCeEEEEeecccccccccccccccCceEEEEEC
Confidence 99988765431 44667789999999999877665 3456899999877654443222110000001122
Q ss_pred cCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEE
Q 004067 371 PLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444 (776)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~ 444 (776)
+ ++.++++...+| .|++||+..++ ...+..+...+..+. |++||+.|+ +++.++. +.||.
T Consensus 280 ~--------~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~H~~~V~~l~-~s~d~~~l~-s~s~Dg~--v~iWd 340 (340)
T d1tbga_ 280 K--------SGRLLLAGYDDF--NCNVWDALKADRAGVLAGHDNRVSCLG-VTDDGMAVA-TGSWDSF--LKIWN 340 (340)
T ss_dssp S--------SSCEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSCEE-EEETTSC--EEEEC
T ss_pred C--------CCCEEEEEECCC--EEEEEECCCCcEEEEEcCCCCCEEEEE-EeCCCCEEE-EEccCCE--EEEeC
Confidence 2 234666666677 79999977654 455666666677665 999999654 4445543 77773
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.41 E-value=3.4e-11 Score=124.82 Aligned_cols=244 Identities=13% Similarity=0.115 Sum_probs=149.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g 200 (776)
..|...+|+| ||+.|++. .++.|.+||+++++.. ..+..+.. .+..+.|||||++|+..+. +.|++|++.++
T Consensus 8 ~pIt~~~~s~---dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~-~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 8 EPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred CCeEEEEECC---CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCC-CEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence 3578899999 99999987 5678999999988644 13443333 4888999999999988765 57999999988
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+.+......... ..+..+.|+||++.|+..+.+..
T Consensus 84 ~~~~~~~~~~~~---------------~~v~~i~~~p~~~~l~~~s~d~~------------------------------ 118 (371)
T d1k8kc_ 84 TWKPTLVILRIN---------------RAARCVRWAPNEKKFAVGSGSRV------------------------------ 118 (371)
T ss_dssp EEEEEEECCCCS---------------SCEEEEEECTTSSEEEEEETTSS------------------------------
T ss_pred cccccccccccc---------------ccccccccccccccceeecccCc------------------------------
Confidence 765443221110 01446889999999887664321
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE--------
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-------- 352 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-------- 352 (776)
..++.++............ ..+...+..++|+|||+.++..+ .+..|.+||...+...
T Consensus 119 ----i~i~~~~~~~~~~~~~~~~------~~~~~~v~~v~~~p~~~~l~s~s----~D~~v~v~~~~~~~~~~~~~~~~~ 184 (371)
T d1k8kc_ 119 ----ISICYFEQENDWWVCKHIK------KPIRSTVLSLDWHPNSVLLAAGS----CDFKCRIFSAYIKEVEERPAPTPW 184 (371)
T ss_dssp ----EEEEEEETTTTEEEEEEEC------TTCCSCEEEEEECTTSSEEEEEE----TTSCEEEEECCCTTTSCCCCCBTT
T ss_pred ----ceeeeeecccccccccccc------cccccccccccccccccceeccc----cCcEEEEEeeccCccccccccccc
Confidence 3334444333332222221 34556788999999999887665 3445888887654321
Q ss_pred --------EEEEecc-CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeec
Q 004067 353 --------VILVEEL-DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVN 422 (776)
Q Consensus 353 --------~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s 422 (776)
.+.+... ..++. .-.|+| ++.++++...+| .|.+||+..+. ...+..+...+..+. |+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~v~-~~~~s~--------~g~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~s~~-fs 252 (371)
T d1k8kc_ 185 GSKMPFGELMFESSSSCGWVH-GVCFSA--------NGSRVAWVSHDS--TVCLADADKKMAVATLASETLPLLAVT-FI 252 (371)
T ss_dssp BSCCCTTCEEEECCCCSSCEE-EEEECS--------SSSEEEEEETTT--EEEEEEGGGTTEEEEEECSSCCEEEEE-EE
T ss_pred cccccceeeeeeccCccCcEE-EEEeec--------ccccccccccCC--cceEEeeecccceeeeecccccceeee-ec
Confidence 1111110 01100 001222 223444444566 89999976654 445555555566654 89
Q ss_pred CCCcEEEEEEccCCCceeeEEEEEe
Q 004067 423 EASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+||+.|+ .+. ++. ..+|..+.
T Consensus 253 ~d~~~la-~g~-d~~--~~~~~~~~ 273 (371)
T d1k8kc_ 253 TESSLVA-AGH-DCF--PVLFTYDS 273 (371)
T ss_dssp ETTEEEE-EET-TSS--CEEEEEET
T ss_pred CCCCEEE-EEc-CCc--eEEEEeeC
Confidence 9997543 333 322 46777764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=3.4e-11 Score=122.37 Aligned_cols=282 Identities=7% Similarity=-0.057 Sum_probs=143.3
Q ss_pred CCCcEEEEeCCCCcc-c-eecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCc--eeEEeeCCCCCceecCCc
Q 004067 146 LPDGIYFQDLSCSKP-E-LKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINE--QRQLTHGANGNTVTHGLA 219 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~-~-~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~--~~~lt~~~~~~~~~~~~~ 219 (776)
.+++|++|+++.... + .+...... .+..++|||||++|+.... +.|.+++++.+. .+........
T Consensus 12 ~~~~I~v~~~~~~~~l~~~~~~~~~~-~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~-------- 82 (333)
T d1ri6a_ 12 ESQQIHVWNLNHEGALTLTQVVDVPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-------- 82 (333)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--------
T ss_pred CCCcEEEEEEcCCCCeEEEEEEcCCC-CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC--------
Confidence 567899999865432 2 12223333 4788999999999966653 458777776543 3333221110
Q ss_pred ccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEE
Q 004067 220 EYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW 299 (776)
Q Consensus 220 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 299 (776)
.....++|||||++|+....+. ..+.+++.+......
T Consensus 83 --------~~p~~l~~spDg~~l~v~~~~~-----------------------------------~~v~~~~~~~~~~~~ 119 (333)
T d1ri6a_ 83 --------GSLTHISTDHQGQFVFVGSYNA-----------------------------------GNVSVTRLEDGLPVG 119 (333)
T ss_dssp --------SCCSEEEECTTSSEEEEEETTT-----------------------------------TEEEEEEEETTEEEE
T ss_pred --------CCceEEEEcCCCCEEeecccCC-----------------------------------Cceeeecccccccee
Confidence 0033688999999988765322 234555555444332
Q ss_pred EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccc-
Q 004067 300 MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTK- 378 (776)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 378 (776)
.... .........+.+|||++.++..... ...|..++..+.............. ... ..+..+.+
T Consensus 120 ~~~~------~~~~~~~~~v~~s~d~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~-~~g----~~p~~i~~~ 185 (333)
T d1ri6a_ 120 VVDV------VEGLDGCHSANISPDNRTLWVPALK---QDRICLFTVSDDGHLVAQDPAEVTT-VEG----AGPRHMVFH 185 (333)
T ss_dssp EEEE------ECCCTTBCCCEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEEEEC-STT----CCEEEEEEC
T ss_pred cccc------cCCCccceEEEeeecceeeeccccc---cceeeEEEeccCCcceeeeceeeee-ecC----CCccEEEEe
Confidence 2111 1222334457899999977655432 2346677765544322211110000 000 00001111
Q ss_pred -cCCeEEEEeccCCceEEEEEeCCCceee------ccccC---CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 379 -YSGGFIWASEKTGFRHLYLHDINGTCLG------PITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 379 -~~~~~~~~s~~~g~~~l~~~~~~g~~~~------~lt~~---~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
++..++......+...++.++....... .+... ...... ..+++|++++++.....+. ..+|.++.
T Consensus 186 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~d~~~~~~~~~~~~~--~~~~~~~~- 261 (333)
T d1ri6a_ 186 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD-IHITPDGRHLYACDRTASL--ITVFSVSE- 261 (333)
T ss_dssp TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE-EEECTTSSEEEEEETTTTE--EEEEEECT-
T ss_pred ccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccccee-EEEecccCceeeecccCCe--EEEEEEcC-
Confidence 1222333444455444555444333211 11111 111222 3489999988887766543 67777764
Q ss_pred CCCCCccccceee-cCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCc
Q 004067 449 PDWNHTLEAPVKL-TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 501 (776)
Q Consensus 449 ~~g~~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~ 501 (776)
++.. ...... ........++|||||++|+...+..+. -.+|.+|..+|.
T Consensus 262 -~~~~--~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~-v~v~~id~~tG~ 311 (333)
T d1ri6a_ 262 -DGSV--LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGEQGL 311 (333)
T ss_dssp -TSCC--EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCE-EEEEEEETTTTE
T ss_pred -CCCE--EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCe-EEEEEEECCCCc
Confidence 3321 112222 222335578999999997655433221 234545766775
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=2.7e-11 Score=125.39 Aligned_cols=310 Identities=10% Similarity=-0.059 Sum_probs=164.9
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
..+.+|||+..+........+..+||++|.++++....+.. .......||| |
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~-------------------------~~~~~~a~sp---D 75 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG-------------------------AFLSLAVAGH---S 75 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------------CTTCEEEECT---T
T ss_pred ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC-------------------------CCCCcceECC---C
Confidence 34568888875443322222346899999999998665531 2234678999 9
Q ss_pred ceEEEEeC-----------CCcEEEEeCCCCccceecC--CCC----CCCccCceeCCCCCEEEEEEC--CcEEEEecCC
Q 004067 139 KKIIMVPL-----------PDGIYFQDLSCSKPELKLS--SSS----CSPVIDPHLSSDGTMIAFVRD--CELHVLNLLI 199 (776)
Q Consensus 139 g~~l~~~~-----------~~~l~~~d~~~~~~~~~l~--~~~----~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~ 199 (776)
|+.|++.. ++.|.+||..+++....+. ... ......+.|||||++|++... +.++++|+++
T Consensus 76 g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~ 155 (368)
T d1mdah_ 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG 155 (368)
T ss_dssp SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 99999862 3459999999988763222 111 112456899999999987753 5799999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
++.......+....+.. .+....+++++||+.+++...+.......
T Consensus 156 ~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~------------------------ 201 (368)
T d1mdah_ 156 ASDDQLTKSASCFHIHP----------GAAATHYLGSCPASLAASDLAAAPAAAGI------------------------ 201 (368)
T ss_dssp TEEEEEEECSSCCCCEE----------EETTEEECCCCTTSCEEEECCSSCCCCEE------------------------
T ss_pred CcEeEEeeccCcceEcc----------CCCceEEEEcCCCCEEEEEecCCceeeee------------------------
Confidence 98766544332211000 00122455788888665543322211000
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
+... .............++++|..++ .. ...++.++...+....+.....
T Consensus 202 -----------~~~~-------------~~~~~~~~~~~~~~~~~g~~~~-~~-----~~~v~~~~~~~~~~~~~~~~~~ 251 (368)
T d1mdah_ 202 -----------VGAQ-------------CTGAQNCSSQAAQANYPGMLVW-AV-----ASSILQGDIPAAGATMKAAIDG 251 (368)
T ss_dssp -----------CCCC-------------SCTTSCBCSCCEEETTTTEEEE-CB-----SSCCEEEECCSSCCEEECCCCS
T ss_pred -----------eecc-------------cccccccceeecccccCcEEEE-ec-----CCCEEEEeecCCceEEEeeccc
Confidence 0000 0011122233467788886433 21 2236777777766655432211
Q ss_pred CceeecccccccCCCC---ccccCCeEEEEeccC------CceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEE
Q 004067 360 DSWVNLHDCFTPLDKG---VTKYSGGFIWASEKT------GFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVY 429 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~------g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~ 429 (776)
.........+.+.+.. ++.+++.+++..... +..+|++||..+++. ..+.. ...+..+ .|||||+.++
T Consensus 252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~-a~spDG~~~l 329 (368)
T d1mdah_ 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAI-IAAQDGASDN 329 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEE-EECCSSSCEE
T ss_pred ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEE-EECCCCCEEE
Confidence 1000000111121111 123344444443322 236899999887753 34433 2333444 5999998655
Q ss_pred EEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEE
Q 004067 430 FTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVA 470 (776)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 470 (776)
|.+.... ..|+.+++. .|+ .+..|.-+.+...+
T Consensus 330 y~s~~~~---~~v~v~D~~-tgk----~~~~i~~g~~P~~l 362 (368)
T d1mdah_ 330 YANSAGT---EVLDIYDAA-SDQ----DQSSVELDKGPESL 362 (368)
T ss_dssp EEEETTT---TEEEEEESS-SCE----EEEECCCCSCCCEE
T ss_pred EEEeCCC---CeEEEEECC-CCC----EEEEEECCCCCCEE
Confidence 5444322 245555653 343 44455444333333
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=8.9e-11 Score=119.14 Aligned_cols=293 Identities=10% Similarity=0.039 Sum_probs=155.2
Q ss_pred CEEEEEeCCCCcCcceEEEEecCCCc-eE--EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 67 NLITYLLSPDHSLSRKVFSFDPKTCK-QE--LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 67 ~~ia~~~~~~~~~~~~l~~~~~~~~~-~~--~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
|+.+|++... ..+|.+|+++... .+ +.+.+ +..+....||| ||++|+
T Consensus 3 ~~~v~v~~~~---~~~I~v~~~~~~~~l~~~~~~~~------------------------~~~v~~la~sp---DG~~L~ 52 (333)
T d1ri6a_ 3 KQTVYIASPE---SQQIHVWNLNHEGALTLTQVVDV------------------------PGQVQPMVVSP---DKRYLY 52 (333)
T ss_dssp EEEEEEEEGG---GTEEEEEEECTTSCEEEEEEEEC------------------------SSCCCCEEECT---TSSEEE
T ss_pred ceEEEEECCC---CCcEEEEEEcCCCCeEEEEEEcC------------------------CCCEeEEEEeC---CCCEEE
Confidence 4567776643 3578999886543 33 23332 23577889999 999997
Q ss_pred EeC--CCcEEEEeCCCCccceecC--CCCCCCccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCCCceecC
Q 004067 144 VPL--PDGIYFQDLSCSKPELKLS--SSSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 144 ~~~--~~~l~~~d~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
+.. ++.|.+|+++.......+. .........++|||||++|+..... .+.+++.+..............
T Consensus 53 v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~----- 127 (333)
T d1ri6a_ 53 VGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL----- 127 (333)
T ss_dssp EEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-----
T ss_pred EEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCC-----
Confidence 763 5778888887654331111 1111225568999999998877643 5777777766544332211110
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
.....+.++||++.++...... ..+.+|+......
T Consensus 128 ----------~~~~~v~~s~d~~~~~~~~~~~-----------------------------------~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 128 ----------DGCHSANISPDNRTLWVPALKQ-----------------------------------DRICLFTVSDDGH 162 (333)
T ss_dssp ----------TTBCCCEECTTSSEEEEEEGGG-----------------------------------TEEEEEEECTTSC
T ss_pred ----------ccceEEEeeecceeeecccccc-----------------------------------ceeeEEEeccCCc
Confidence 0033677999999887765432 2345555544332
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc-C-ceeecccccccCCCC
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-D-SWVNLHDCFTPLDKG 375 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~-~~~~~~~~~~~~~~~ 375 (776)
......... ..........+.|+++++.++... .......++.++.............. + ..... -.+....
T Consensus 163 ~~~~~~~~~--~~~~g~~p~~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 236 (333)
T d1ri6a_ 163 LVAQDPAEV--TTVEGAGPRHMVFHPNEQYAYCVN-ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT---RWAADIH 236 (333)
T ss_dssp EEEEEEEEE--ECSTTCCEEEEEECTTSSEEEEEE-TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC---CCEEEEE
T ss_pred ceeeeceee--eeecCCCccEEEEeccceeEEeec-cccCceEEEeecccccceeeeeeeeeeecCCCcc---ccceeEE
Confidence 111000000 012233456789999998665543 33344456665555544433322110 0 00000 0000001
Q ss_pred ccccCCeEEEEeccCCceEEEEEeCCCceeeccc--cCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 376 VTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT--EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt--~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
++.+++.++......+...+|..+.+++...... ........+ .|||||++||+.....+ .+.+|+++..
T Consensus 237 ~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-a~spDGk~l~va~~~~~--~v~v~~id~~ 308 (333)
T d1ri6a_ 237 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGF-NVDHSGKYLIAAGQKSH--HISVYEIVGE 308 (333)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCE-EECTTSSEEEEECTTTC--EEEEEEEETT
T ss_pred EecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEE-EEeCCCCEEEEEECCCC--eEEEEEEECC
Confidence 1233333444444455455666665554332221 111112233 49999999877654443 4889999863
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=9.4e-12 Score=128.94 Aligned_cols=291 Identities=8% Similarity=-0.067 Sum_probs=157.3
Q ss_pred CceEEEEe------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----------CcEEEEecCCC
Q 004067 138 KKKIIMVP------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----------CELHVLNLLIN 200 (776)
Q Consensus 138 dg~~l~~~------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----------~~l~~~~l~~g 200 (776)
||++.++. ...+||++|.++++.. ....... ...+.|||||+.|++... +.|.+||+.++
T Consensus 30 ~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~-~~~~~~~--~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~ 106 (368)
T d1mdah_ 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTL-GHSLGAF--LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEE-EEEEECT--TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred CCcceeEEeeccCCCcceEEEEeCCCCcEE-EEEeCCC--CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCC
Confidence 78875443 2345999999999987 3333222 346899999999998763 24999999999
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+.......+.......+.. ...++|||||++|++...+.
T Consensus 107 ~~~~~i~~p~~~~~~~g~~----------p~~~a~SpDGk~l~va~~~~------------------------------- 145 (368)
T d1mdah_ 107 LPIADIELPDAPRFSVGPR----------VHIIGNCASSACLLFFLFGS------------------------------- 145 (368)
T ss_dssp CEEEEEEETTSCSCCBSCC----------TTSEEECTTSSCEEEEECSS-------------------------------
T ss_pred cEeeeecCCccceecccCC----------ccceEECCCCCEEEEEeCCC-------------------------------
Confidence 8765544332211111111 23688999999998765332
Q ss_pred CCCeEEEEEEEcCCCceEEE-EcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 281 SNVKVRLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
..+.+||+.+++.... ..+.... .........+.+++||+.+++......... .+...
T Consensus 146 ----~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~-------------~~~~~-- 204 (368)
T d1mdah_ 146 ----SAAAGLSVPGASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAA-------------GIVGA-- 204 (368)
T ss_dssp ----SCEEEEEETTTEEEEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCC-------------EECCC--
T ss_pred ----CeEEEEECCCCcEeEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceee-------------eeeec--
Confidence 2378899999886543 2211000 000111233566777764444332111110 00000
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecccc----------CCeEE--EEEEeecCCCcE
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE----------GDWMV--EQIVGVNEASGQ 427 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~----------~~~~~--~~~~~~s~dg~~ 427 (776)
..+...... + ....+...+.++.+. .+ .++.++..++....+.. ..+.. .....++++++.
T Consensus 205 ~~~~~~~~~--~--~~~~~~~~g~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~ 277 (368)
T d1mdah_ 205 QCTGAQNCS--S--QAAQANYPGMLVWAV-AS--SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CSCTTSCBC--S--CCEEETTTTEEEECB-SS--CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred ccccccccc--e--eecccccCcEEEEec-CC--CEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE
Confidence 000000000 0 001112223333322 22 35555554443322211 01111 112458899998
Q ss_pred EEEEEccCC----CceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCcee
Q 004067 428 VYFTGTLDG----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 503 (776)
Q Consensus 428 i~~~~~~~~----~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~ 503 (776)
+|+...... ....++|.+++. .++ .+..+..+.....+.|||||+.++|+....+ ..|+++|..+|+.+
T Consensus 278 ~~v~~~~~~~~~~~~~~~v~v~D~~-t~~----~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~--~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 278 IMILTVEHSRSCLAAAENTSSVTAS-VGQ----TSGPISNGHDSDAIIAAQDGASDNYANSAGT--EVLDIYDAASDQDQ 350 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESS-SCC----EEECCEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEESSSCEEE
T ss_pred EEEEecCCCceeecCCceEEEEECC-CCc----EeEEecCCCceeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEE
Confidence 888765432 112468888874 232 3444443333557899999998888876544 47999999999877
Q ss_pred Eeec
Q 004067 504 LPLY 507 (776)
Q Consensus 504 ~~l~ 507 (776)
+.+.
T Consensus 351 ~~i~ 354 (368)
T d1mdah_ 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 6653
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.35 E-value=3.8e-12 Score=116.40 Aligned_cols=169 Identities=12% Similarity=-0.038 Sum_probs=114.2
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
.|||+||..++.. .|..+++.|.++||.|+.++.++++.+...... ..+++...++.+.++.
T Consensus 4 PVv~vHG~~~~~~-------~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~i~~~~~~~-- 65 (179)
T d1ispa_ 4 PVVMVHGIGGASF-------NFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYN---------NGPVLSRFVQKVLDET-- 65 (179)
T ss_dssp CEEEECCTTCCGG-------GGHHHHHHHHHTTCCGGGEEECCCSCTTCCHHH---------HHHHHHHHHHHHHHHH--
T ss_pred CEEEECCCCCCHH-------HHHHHHHHHHHcCCeEEEEecCCccccccccch---------hhhhHHHHHHHHHHhc--
Confidence 3567899776543 355678899999999999999988766432211 1345666666666543
Q ss_pred CCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcE
Q 004067 636 KVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKL 713 (776)
Q Consensus 636 d~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~ 713 (776)
..+++.|+||||||.++..++.++ +++++.+|.+++....... ...+. .......|+
T Consensus 66 ~~~~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~--------~~l~~-------------~~~~~~~~~ 124 (179)
T d1ispa_ 66 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG--------KALPG-------------TDPNQKILY 124 (179)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS--------BCCCC-------------SCTTCCCEE
T ss_pred CCceEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchh--------hhcCC-------------cccccCceE
Confidence 346899999999999999999876 6788999987764211100 00000 011234689
Q ss_pred EEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 714 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 714 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+.++|..|.++++..+. -...+.+.+++.+|... . ...++++.+.+||+.
T Consensus 125 ~~i~~~~D~~v~~~~~~---------l~~~~~~~~~~~~H~~l-~-~~~~v~~~i~~~L~~ 174 (179)
T d1ispa_ 125 TSIYSSADMIVMNYLSR---------LDGARNVQIHGVGHIGL-L-YSSQVNSLIKEGLNG 174 (179)
T ss_dssp EEEEETTCSSSCHHHHC---------CBTSEEEEESSCCTGGG-G-GCHHHHHHHHHHHTT
T ss_pred EEEEecCCcccCchhhc---------CCCceEEEECCCCchhh-c-cCHHHHHHHHHHHhc
Confidence 99999999999976431 23446778899999642 2 234678888888863
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=2e-10 Score=117.08 Aligned_cols=327 Identities=9% Similarity=0.007 Sum_probs=183.3
Q ss_pred eEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE-EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE-LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
.+++||++|+--+. ...|.+||+.+++.. .+..|. ..+....|+| ++
T Consensus 18 c~~~~~~~l~tgs~-----Dg~i~vWd~~~~~~~~~l~~H~------------------------~~V~~l~~s~---~~ 65 (355)
T d1nexb2 18 CLQFEDNYVITGAD-----DKMIRVYDSINKKFLLQLSGHD------------------------GGVWALKYAH---GG 65 (355)
T ss_dssp EEEEETTEEEEEET-----TTEEEEEETTTTEEEEEEECCS------------------------SCEEEEEEET---TT
T ss_pred EEEECCCEEEEEeC-----CCeEEEEECCCCcEEEEEECCC------------------------CCEEEEEEcC---CC
Confidence 47889999885443 247999999988764 344332 3788999999 87
Q ss_pred eEEEEeCCCcEEEEeCCCCccceecCCCC-CCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCceecC
Q 004067 140 KIIMVPLPDGIYFQDLSCSKPELKLSSSS-CSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 140 ~~l~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
..+.-..++.|.+|+....+......... ........++++++.++.... +.|.+|++.++.................
T Consensus 66 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d1nexb2 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145 (355)
T ss_dssp EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence 65445588999999999887652222211 112344677899999888875 5689999887654322111110000000
Q ss_pred ----CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 218 ----LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 218 ----~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
..............-..+.++++.++....+ ..+.+||+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d------------------------------------~~i~~~d~~ 189 (355)
T d1nexb2 146 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD------------------------------------NTLIVWDVA 189 (355)
T ss_dssp CTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETT------------------------------------SCEEEEETT
T ss_pred ccccccceeeeeeeccccccccccccceeeeeccc------------------------------------ceeeeeecc
Confidence 0000000000001122344555555443322 247889998
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-cCceeecccccccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPL 372 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~ 372 (776)
+++..... ...........|+|+++.++... .+..|.+||..++......... .....
T Consensus 190 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~h~~~v~~--------- 248 (355)
T d1nexb2 190 QMKCLYIL--------SGHTDRIYSTIYDHERKRCISAS----MDTTIRIWDLENGELMYTLQGHTALVGL--------- 248 (355)
T ss_dssp TTEEEEEE--------CCCSSCEEEEEEETTTTEEEEEE----TTSCEEEEETTTCCEEEEECCCSSCCCE---------
T ss_pred cccceeee--------eccccccccccccccceeeeccc----ccceEEeeeccccccccccccccccccc---------
Confidence 88765442 33455677889999999777665 3445899999988765444322 11111
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCC
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 452 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~ 452 (776)
+.+++ .++++...+| .|++||+...... +..+...+.....++++++. ++.+. ++ .+.||.+. .|+
T Consensus 249 ---~~~~~-~~l~~~~~dg--~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~-l~~g~-d~--~i~vwd~~---tg~ 314 (355)
T d1nexb2 249 ---LRLSD-KFLVSAAADG--SIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNI-LVSGS-EN--QFNIYNLR---SGK 314 (355)
T ss_dssp ---EEECS-SEEEEECTTS--EEEEEETTTCCEE-EEEECTTCCCCCEEEECSSE-EEEEE-TT--EEEEEETT---TCC
T ss_pred ---ccccc-ceeeeeeccc--cccccccccccee-cccccCCceEEEEEcCCCCE-EEEEe-CC--EEEEEECC---CCC
Confidence 12223 3566666677 8999998766432 33222223334446777774 44443 33 36777654 343
Q ss_pred Cccccce-eecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 453 HTLEAPV-KLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 453 ~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
.+. .+..+. .+..++|+|+ .++...+.+.. -.|+++|+
T Consensus 315 ----~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~-~~l~~~df 354 (355)
T d1nexb2 315 ----LVHANILKDADQIWSVNFKGK--TLVAAVEKDGQ-SFLEILDF 354 (355)
T ss_dssp ----BCCSCTTTTCSEEEEEEEETT--EEEEEEESSSC-EEEEEEEC
T ss_pred ----EEEEEecCCCCCEEEEEEcCC--eEEEEEECCCc-EEEEEEeC
Confidence 222 233333 4667888876 46555554332 34666664
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=99.33 E-value=8.9e-12 Score=125.86 Aligned_cols=228 Identities=13% Similarity=0.104 Sum_probs=145.5
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh--hhh---
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF--EAS--- 609 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~--~~~--- 609 (776)
.+|.+..|.-.+. .+-++||++|+..++.... .|....-.--..+....|-|+++|..|.+...... ...
T Consensus 29 ~~laY~t~G~ln~----~~~NaVlv~h~ltg~~~~~-~WW~~liG~g~alDt~kyfVI~~n~lG~~~gst~p~s~~p~~~ 103 (376)
T d2vata1 29 VPVAYKSWGRMNV----SRDNCVIVCHTLTSSAHVT-SWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPCSPDPDAE 103 (376)
T ss_dssp EEEEEEEESCCCT----TSCCEEEEECCTTCCSCGG-GTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTTSBCTTTC
T ss_pred ceEEEEeecccCC----CCCCEEEEcCCCcCCcccc-ccHHHhCCCCCccCccceEEEEeccCCCCcCCCCCCCCCcccc
Confidence 3456666664443 3568999999987776543 34222211124566788999999999886432111 111
Q ss_pred ----hhhccCCccHHHHHHHHHHHHHcCCCCCCcE-EEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC----------
Q 004067 610 ----IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---------- 674 (776)
Q Consensus 610 ----~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i-~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~---------- 674 (776)
.-..+...++.|++++-..++++-.| +++ +|+|.||||+.|+.+|..+|+++..+|++++..-
T Consensus 104 ~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI--~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~~~~s~~~~a~~~ 181 (376)
T d2vata1 104 GQRPYGAKFPRTTIRDDVRIHRQVLDRLGV--RQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCRQSGWCAAWFE 181 (376)
T ss_dssp --CBCGGGCCCCCHHHHHHHHHHHHHHHTC--CCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSBCCHHHHHHHH
T ss_pred cCCcccccCCcchhHHHHHHHHHHHHHhCc--ceEEEeecccHHHHHHHHHHHhchHHHhhhcccccccccchHHHHHHH
Confidence 01234456789999998888776544 465 6999999999999999999999988887765431
Q ss_pred -----------ccc--cc-----------------------ccccccccCCC-----C----------------------
Q 004067 675 -----------WDG--YD-----------------------TFYTEKYMGLP-----S---------------------- 691 (776)
Q Consensus 675 -----------~~~--~~-----------------------~~~~~~~~~~~-----~---------------------- 691 (776)
|.. |. ..+.+++.... .
T Consensus 182 ~~~~ai~~Dp~w~~G~Y~~~~~p~~GL~~Ar~~~~~ty~S~~~~~~rf~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 261 (376)
T d2vata1 182 TQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGNSHRA 261 (376)
T ss_dssp HHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC-------------------------
T ss_pred HHHHHhhccccccCCCccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhccccccccccccchhhhccccccccccccc
Confidence 100 00 00111110000 0
Q ss_pred ----CCccch------------------------hc--------CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHH
Q 004067 692 ----EDPVGY------------------------EY--------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINA 735 (776)
Q Consensus 692 ----~~~~~~------------------------~~--------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 735 (776)
...+.| .. .+....+.+|++|+|+|.+..|..+|+++.+++++.
T Consensus 262 ~~~~~~vesyL~~~g~k~~~rfDansyl~l~~a~d~~Di~~~~~g~l~~aL~~I~a~~LvI~~~sD~lFPp~~~~e~a~~ 341 (376)
T d2vata1 262 GQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVEMGRS 341 (376)
T ss_dssp --CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTCSSSCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhhhhcccccccHHHHHHHHHhcccccccCCCHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHh
Confidence 000000 00 122334788999999999999999999999998887
Q ss_pred HHHCCCCeEEEEec-CCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 736 LVAARKPYEILIFP-DERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 736 l~~~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+ ++.++.+++ ..||.- +....+.+...+.+||++
T Consensus 342 l----~~a~~~~I~S~~GHDa-FL~e~~~~~~~I~~FL~q 376 (376)
T d2vata1 342 I----PNSRLCVVDTNEGHDF-FVMEADKVNDAVRGFLDQ 376 (376)
T ss_dssp S----TTEEEEECCCSCGGGH-HHHTHHHHHHHHHHHHTC
T ss_pred c----CCCeEEEECCCCCccc-cccCHHHHHHHHHHHHcC
Confidence 7 467888887 568853 223467788888888863
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.33 E-value=1.8e-10 Score=116.82 Aligned_cols=264 Identities=10% Similarity=0.024 Sum_probs=156.9
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+.+++|||||++|+.....+ ..|++||+++++...-...... .........+.|+|
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~----~~v~v~D~~t~~~~~~~~~~~~------------------~~~~~~~~~v~~s~ 91 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLSTP------------------EERVKSLFGAALSP 91 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCBT------------------TEEEECTTCEEECT
T ss_pred CCccEEEECCCCCEEEEEECCC----CeEEEEECCCCcEEEEEecCCC------------------cccccceeeEEEcC
Confidence 4468999999999886554433 4799999999987543321110 00012344678999
Q ss_pred cCCCceEEEEe-------------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc
Q 004067 135 TSSKKKIIMVP-------------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE 201 (776)
Q Consensus 135 ~~~dg~~l~~~-------------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~ 201 (776)
||++++.. ....+.++|..+++....+.. .. ......|||||++++. ..+++++++..+++
T Consensus 92 ---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~-~~~~~~~~d~~~~~ 165 (337)
T d1pbyb_ 92 ---DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR-QITMLAWARDGSKLYG-LGRDLHVMDPEAGT 165 (337)
T ss_dssp ---TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS-SCCCEEECTTSSCEEE-ESSSEEEEETTTTE
T ss_pred ---CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cC-CceEEEEcCCCCEEEE-EcCCcceeeeecCc
Confidence 99999876 345688899999887633333 22 3677899999998754 56789999999887
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEee--cCCCCCCCCCcceecCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMH--QGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g 279 (776)
.......... .....++|++..+..... ......... ..... ....
T Consensus 166 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----------~~~~ 213 (337)
T d1pbyb_ 166 LVEDKPIQSW------------------EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDI-----------DPAD 213 (337)
T ss_dssp EEEEECSTTT------------------TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTS-----------CTTS
T ss_pred EEEEeecCCc------------------cccceecCCcceeecccc---ccceeeeeeeeeeecc-----------ceee
Confidence 6554332211 012235566654322111 000000000 00000 0000
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
.......+.+++..+++...... ...........++|+++.++... ..|.+||+++++.........
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~------~~i~v~d~~~~~~~~~~~~~~ 280 (337)
T d1pbyb_ 214 PTAYRTGLLTMDLETGEMAMREV-------RIMDVFYFSTAVNPAKTRAFGAY------NVLESFDLEKNASIKRVPLPH 280 (337)
T ss_dssp GGGEEEEEEEEETTTCCEEEEEE-------EECSSCEEEEEECTTSSEEEEEE------SEEEEEETTTTEEEEEEECSS
T ss_pred ecccCccEEEEEcCCCcEEEEEe-------cCCCcceEEEEecccceEEEEcc------ccEEEEECCCCcEEEEEcCCC
Confidence 01123568999999998766544 23445667789999998765442 358999999988655444332
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
..+. -.|+| +++.+|++..+| .|.+||+++.+
T Consensus 281 ~~~~---~~~s~--------dG~~l~v~~~~~--~i~v~D~~t~~ 312 (337)
T d1pbyb_ 281 SYYS---VNVST--------DGSTVWLGGALG--DLAAYDAETLE 312 (337)
T ss_dssp CCCE---EEECT--------TSCEEEEESBSS--EEEEEETTTCC
T ss_pred CEEE---EEECC--------CCCEEEEEeCCC--cEEEEECCCCc
Confidence 2111 11333 334566676666 79999988654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=6.8e-10 Score=112.33 Aligned_cols=246 Identities=15% Similarity=0.077 Sum_probs=142.7
Q ss_pred CCceeEcC--CCCEEEEEeCCCCcCcceEEEEecCCCceE-EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSP--DDNLITYLLSPDHSLSRKVFSFDPKTCKQE-LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~Sp--DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
++.++||| ||++||-.+. ..+|.+||+..++.. .+..... .. .......+..+.|+
T Consensus 66 v~~v~fsP~~~g~~lasgs~-----Dg~i~iWd~~~~~~~~~~~~~~~---------~~-------~~~~~~~v~~v~~s 124 (325)
T d1pgua1 66 VTTVKFSPIKGSQYLCSGDE-----SGKVIVWGWTFDKESNSVEVNVK---------SE-------FQVLAGPISDISWD 124 (325)
T ss_dssp EEEEEECSSTTCCEEEEEET-----TSEEEEEEEEEEGGGTEEEEEEE---------EE-------EECCSSCEEEEEEC
T ss_pred EEEEEEeeCCCCCEEEEEeC-----CCCEEEeeecCCcceeeeecccc---------cc-------cccccCcEEEEEEC
Confidence 57899998 6788874433 246889988654321 1110000 00 00012357889999
Q ss_pred ecCCCceEEEEeC---CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeC
Q 004067 134 KTSSKKKIIMVPL---PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 134 p~~~dg~~l~~~~---~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~ 208 (776)
+ ||+.|+... +..+.+++.++++....+.... ..+....|+|+++.++.+. ++.+.++++.+++...-...
T Consensus 125 ~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~ 200 (325)
T d1pgua1 125 F---EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS-QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 200 (325)
T ss_dssp T---TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS-SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred C---CCCccceeeccccceEEEEeecccccceeeeecc-cccccccccccccceEEEeecccccccccccccccceeccc
Confidence 9 999998763 4558888888877653444333 3477799999998766544 45689999887665433222
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeE-EEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFI-AFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
... ... .+..++|+||+..+ +....+ ..|
T Consensus 201 ~~~------~~~--------~v~~v~~~pd~~~~l~s~~~d------------------------------------~~i 230 (325)
T d1pgua1 201 HHK------QGS--------FVRDVEFSPDSGEFVITVGSD------------------------------------RKI 230 (325)
T ss_dssp SSC------TTC--------CEEEEEECSTTCCEEEEEETT------------------------------------CCE
T ss_pred ccC------CCC--------ccEEeeeccccceeccccccc------------------------------------cce
Confidence 110 111 13478899986444 433322 237
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcc----eEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCce
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEE----YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSW 362 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~ 362 (776)
.+||..+++....- ..+.. .+..+.| |||+.|+..+ .+..|.+||+.+++...... +.....
T Consensus 231 ~iwd~~~~~~~~~l--------~~~~~~v~~~~~s~~~-~dg~~l~s~s----~D~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (325)
T d1pgua1 231 SCFDGKSGEFLKYI--------EDDQEPVQGGIFALSW-LDSQKFATVG----ADATIRVWDVTTSKCVQKWTLDKQQLG 297 (325)
T ss_dssp EEEETTTCCEEEEC--------CBTTBCCCSCEEEEEE-SSSSEEEEEE----TTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred eeeeeccccccccc--------cccccccccceeeeec-cCCCEEEEEe----CCCeEEEEECCCCCEEEEEEecCCccc
Confidence 89999888754331 12222 2334444 6888777665 34569999999887543322 222110
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeC
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDI 400 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~ 400 (776)
... . .+.+.++..+++...+| .|++|++
T Consensus 298 ~~~---~-----~~~~~~~~~l~s~s~dg--~i~vwdl 325 (325)
T d1pgua1 298 NQQ---V-----GVVATGNGRIISLSLDG--TLNFYEL 325 (325)
T ss_dssp GCE---E-----EEEEEETTEEEEEETTS--CEEEEET
T ss_pred CeE---E-----EEEECCCCEEEEEECCC--EEEEEEC
Confidence 000 0 01233444566666667 7888874
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.21 E-value=1.1e-08 Score=103.29 Aligned_cols=275 Identities=11% Similarity=0.021 Sum_probs=158.2
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~ 202 (776)
..|....|+| ||++|+.. .++.|.+||+.+++....+.... ..+..++|+|||+.++..+.. .+..++......
T Consensus 56 ~~I~~l~~s~---~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 131 (340)
T d1tbga_ 56 AKIYAMHWGT---DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp SCEEEEEECT---TSSEEEEEETTTEEEEEETTTTEEEEEEECSC-SCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred CCEEEEEECC---CCCEEEEEECCCceeeeecccceeEEEEeccc-ccEEeeEeeccceeeeeecccceeeccccccccc
Confidence 3789999999 99999976 68899999999988764444333 348889999999999988754 577777654432
Q ss_pred e--EEe-eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 203 R--QLT-HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 203 ~--~lt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
. ... ..+. .. .........+..+.....+
T Consensus 132 ~~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~------------------------------- 163 (340)
T d1tbga_ 132 NVRVSRELAGH--------TG---------YLSCCRFLDDNQIVTSSGD------------------------------- 163 (340)
T ss_dssp CCCEEEEECCC--------SS---------CEEEEEEEETTEEEEEETT-------------------------------
T ss_pred ccccceecccc--------cc---------ccccccccccccccccccc-------------------------------
Confidence 1 111 1110 00 0011112222333322211
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe-c
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-E 358 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~ 358 (776)
.....+........... ......+....+.+++..++... .+..|.+||+.+++....... .
T Consensus 164 -----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----~d~~v~i~d~~~~~~~~~~~~h~ 226 (340)
T d1tbga_ 164 -----TTCALWDIETGQQTTTF--------TGHTGDVMSLSLAPDTRLFVSGA----CDASAKLWDVREGMCRQTFTGHE 226 (340)
T ss_dssp -----TEEEEEETTTTEEEEEE--------ECCSSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTTEEEEEECCCS
T ss_pred -----ccccccccccccccccc--------cccceeEeeeccccccceeEEee----cCceEEEEECCCCcEEEEEeCCC
Confidence 11233333333222221 12334456677888887666554 345689999998876544332 2
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cc--cCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-IT--EGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt--~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
...... .|+| ++.++++...+| .|++|+........ +. .....+..+ .|+++|+.|+..+ .+
T Consensus 227 ~~i~~v---~~~p--------~~~~l~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~g~-~d 291 (340)
T d1tbga_ 227 SDINAI---CFFP--------NGNAFATGSDDA--TCRLFDLRADQELMTYSHDNIICGITSV-SFSKSGRLLLAGY-DD 291 (340)
T ss_dssp SCEEEE---EECT--------TSSEEEEEETTS--CEEEEETTTTEEEEEECCTTCCSCEEEE-EECSSSCEEEEEE-TT
T ss_pred CCeEEE---EECC--------CCCEEEEEeCCC--eEEEEeecccccccccccccccCceEEE-EECCCCCEEEEEE-CC
Confidence 221111 1222 233555666666 78889987665432 22 223335554 4999999765544 44
Q ss_pred CCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEE
Q 004067 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCS 496 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~ 496 (776)
+. +.+|.+. .+. .+..+..+. .+..+.|+|||+.|+... .+. .|++||
T Consensus 292 g~--i~iwd~~---~~~----~~~~~~~H~~~V~~l~~s~d~~~l~s~s-~Dg---~v~iWd 340 (340)
T d1tbga_ 292 FN--CNVWDAL---KAD----RAGVLAGHDNRVSCLGVTDDGMAVATGS-WDS---FLKIWN 340 (340)
T ss_dssp SC--EEEEETT---TCC----EEEEECCCSSCEEEEEECTTSSCEEEEE-TTS---CEEEEC
T ss_pred CE--EEEEECC---CCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEc-cCC---EEEEeC
Confidence 33 6676543 343 556666554 467889999999877543 322 466654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.19 E-value=2e-09 Score=109.31 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=157.2
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+.++.|||||++++.....+ ..|++||+.+++.......... . ...........|||
T Consensus 40 ~~p~~l~~spDG~~l~v~~~~~----~~v~~~d~~t~~~~~~~~~~~~--------~---------~~~~~~~~~v~~s~ 98 (346)
T d1jmxb_ 40 FGPGTAMMAPDNRTAYVLNNHY----GDIYGIDLDTCKNTFHANLSSV--------P---------GEVGRSMYSFAISP 98 (346)
T ss_dssp CSSCEEEECTTSSEEEEEETTT----TEEEEEETTTTEEEEEEESCCS--------T---------TEEEECSSCEEECT
T ss_pred CCcceEEECCCCCEEEEEECCC----CcEEEEeCccCeeeeeeccccc--------c---------cccCCceEEEEEec
Confidence 4468999999999887554433 5799999999987543321110 0 00012345678999
Q ss_pred cCCCceEEEEe-------------CCCcEEEEeCCCCccceecCCCC-CCCccCceeCCCCCEEEEEECCcEEEEecCCC
Q 004067 135 TSSKKKIIMVP-------------LPDGIYFQDLSCSKPELKLSSSS-CSPVIDPHLSSDGTMIAFVRDCELHVLNLLIN 200 (776)
Q Consensus 135 ~~~dg~~l~~~-------------~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g 200 (776)
||+++++. .+..+.+++..+++....+.... ........+++|++.+ +...++.++++.++
T Consensus 99 ---DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 173 (346)
T d1jmxb_ 99 ---DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY--VAGPDIYKMDVKTG 173 (346)
T ss_dssp ---TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE--EESSSEEEECTTTC
T ss_pred ---CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE--EeCCcceEEEccCC
Confidence 99999876 35568888888776542221111 1124556778888644 45678999999988
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+.......+.. .....++|+++.++..................... . .....
T Consensus 174 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~ 225 (346)
T d1jmxb_ 174 KYTVALPLRNW------------------NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD---------K-QDPAT 225 (346)
T ss_dssp CEEEEECSTTC------------------CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----------------CC
T ss_pred CEEEEEecCCC------------------ccceEEeccccEEEEEecCCCceEeeeeeeeeccC---------c-eeEee
Confidence 76554332221 12345788888665433222211111110000000 0 00011
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
......+.+|+..++....... ..+...+....+++++..+++.. ...|.+||+++++..........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~v~d~~~~~~~~~~~~~~~ 293 (346)
T d1jmxb_ 226 ADLLYGYLSVDLKTGKTHTQEF-------ADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHT 293 (346)
T ss_dssp CEEEEEEEEEETTTCCEEEEEE-------EECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSC
T ss_pred ccCCceEEEEECCCCceEEEEe-------ecccceeEEEEEeCCCCEEEEec-----CCeEEEEECCCCcEEEEEcCCCC
Confidence 1233568999999988766543 23455677788999988666543 22589999999876554443222
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
.+. -.|+| +++.+++...+| .|.+||+++++
T Consensus 294 ~~~---va~s~--------DG~~l~v~~~d~--~v~v~D~~t~~ 324 (346)
T d1jmxb_ 294 YYC---VAFDK--------KGDKLYLGGTFN--DLAVFNPDTLE 324 (346)
T ss_dssp CCE---EEECS--------SSSCEEEESBSS--EEEEEETTTTE
T ss_pred EEE---EEEcC--------CCCEEEEEeCCC--cEEEEECccCC
Confidence 221 12333 334556666666 89999998765
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=6e-09 Score=105.13 Aligned_cols=309 Identities=10% Similarity=-0.007 Sum_probs=175.0
Q ss_pred eEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
.+++||++|+-.+. ...|.+||+.+++..+.... +...+.++.|+| +
T Consensus 22 ~~~~~g~~l~sgs~-----Dg~i~vWd~~~~~~~~~~~~-----------------------h~~~V~~v~~~~---~-- 68 (342)
T d2ovrb2 22 CLQFCGNRIVSGSD-----DNTLKVWSAVTGKCLRTLVG-----------------------HTGGVWSSQMRD---N-- 68 (342)
T ss_dssp EEEEETTEEEEEET-----TSCEEEEETTTCCEEEECCC-----------------------CSSCEEEEEEET---T--
T ss_pred EEEECCCEEEEEeC-----CCeEEEEECCCCCEEEEEeC-----------------------CCCCEEEEEeCC---C--
Confidence 48999999985443 24699999999887544321 124688889987 5
Q ss_pred EEE-EeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCceecCC
Q 004067 141 IIM-VPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVTHGL 218 (776)
Q Consensus 141 ~l~-~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~ 218 (776)
.|+ -..++.+.+|+....... .........+ .........++... +..+.+++..+++..........
T Consensus 69 ~l~s~s~D~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~------- 138 (342)
T d2ovrb2 69 IIISGSTDRTLKVWNAETGECI-HTLYGHTSTV--RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA------- 138 (342)
T ss_dssp EEEEEETTSCEEEEETTTTEEE-EEECCCSSCE--EEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-------
T ss_pred ccccceecccccccccccccce-ecccccceeE--eeeecccccccccccceeEEEeecccccceeeeecccc-------
Confidence 444 347889999998887765 3222221112 22233344444444 35688899888876554433221
Q ss_pred cccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE
Q 004067 219 AEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS 298 (776)
Q Consensus 219 ~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 298 (776)
....+.+..+.++....+ ..+.+||...++..
T Consensus 139 ------------~~~~~~~~~~~~~~~~~d------------------------------------~~i~~~d~~~~~~~ 170 (342)
T d2ovrb2 139 ------------AVRCVQYDGRRVVSGAYD------------------------------------FMVKVWDPETETCL 170 (342)
T ss_dssp ------------CEEEEEECSSCEEEEETT------------------------------------SCEEEEEGGGTEEE
T ss_pred ------------cceeeccccceeeeecCC------------------------------------CeEEEeecccceee
Confidence 122234455555554422 23677887766544
Q ss_pred EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccc
Q 004067 299 WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTK 378 (776)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (776)
... ..+... ...+++|++.++..+ .+..|.+||+.++........... ... .+ ++
T Consensus 171 ~~~--------~~~~~~--~~~~~~~~~~l~s~~----~dg~i~~~d~~~~~~~~~~~~~~~-~v~---~~-------~~ 225 (342)
T d2ovrb2 171 HTL--------QGHTNR--VYSLQFDGIHVVSGS----LDTSIRVWDVETGNCIHTLTGHQS-LTS---GM-------EL 225 (342)
T ss_dssp EEE--------CCCSSC--EEEEEECSSEEEEEE----TTSCEEEEETTTCCEEEEECCCCS-CEE---EE-------EE
T ss_pred EEE--------cCcccc--cccccCCCCEEEEEe----CCCeEEEeecccceeeeEeccccc-cee---EE-------ec
Confidence 321 122222 345667888777665 345699999998876443332211 110 01 22
Q ss_pred cCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCcccc
Q 004067 379 YSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA 457 (776)
Q Consensus 379 ~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~ 457 (776)
++ .++++...+| .|++|+....+. ..+............++.+++.+ +++..++ .+.+|.+. .|+ .
T Consensus 226 ~~-~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~Dg--~i~iwd~~---tg~----~ 292 (342)
T d2ovrb2 226 KD-NILVSGNADS--TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV-ITSSDDG--TVKLWDLK---TGE----F 292 (342)
T ss_dssp ET-TEEEEEETTS--CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE-EEEETTS--EEEEEETT---TCC----E
T ss_pred CC-CEEEEEcCCC--EEEEEecccccccccccccceeeeceeecccCCCee-EEEcCCC--EEEEEECC---CCC----E
Confidence 23 3555555666 799999776653 33333221112222345566654 4444444 36777654 343 3
Q ss_pred ceeecC-----C-CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 458 PVKLTN-----G-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 458 ~~~l~~-----~-~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
+..+.. . ..+..++|+||+..|+......+.-..|+++|+.
T Consensus 293 i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 293 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 344431 1 1266889999998777766554445679998874
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=99.17 E-value=4.5e-12 Score=121.65 Aligned_cols=188 Identities=12% Similarity=0.022 Sum_probs=109.6
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
+.++||++||..++.. .|..+++.|. +|.|+++|++|++.. ++++.+.+..+
T Consensus 16 ~~~~l~~lhg~~g~~~-------~~~~la~~L~--~~~v~~~~~~g~~~~----------------a~~~~~~i~~~--- 67 (230)
T d1jmkc_ 16 QEQIIFAFPPVLGYGL-------MYQNLSSRLP--SYKLCAFDFIEEEDR----------------LDRYADLIQKL--- 67 (230)
T ss_dssp CSEEEEEECCTTCCGG-------GGHHHHHHCT--TEEEEEECCCCSTTH----------------HHHHHHHHHHH---
T ss_pred CCCeEEEEcCCCCCHH-------HHHHHHHHCC--CCEEeccCcCCHHHH----------------HHHHHHHHHHh---
Confidence 4589999999877754 3455677773 799999999987522 34555544433
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCC---ceEEEEEcCCCCCcccc------cccccc---cccCCCC--CCc----
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSGAPVTSWDGY------DTFYTE---KYMGLPS--EDP---- 694 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~---~~~~~v~~~~~~~~~~~------~~~~~~---~~~~~~~--~~~---- 694 (776)
. ...++.|+||||||.+|+.+|.++++ .+..++...+....... ...... ....... ...
T Consensus 68 ~--~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (230)
T d1jmkc_ 68 Q--PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKH 145 (230)
T ss_dssp C--CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHHH
T ss_pred C--CCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhccccccccccHHHHH
Confidence 1 34679999999999999999987543 34444444332111000 000000 0000000 000
Q ss_pred -------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC-CCCCcHHHHHH
Q 004067 695 -------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP-RRHRDRIYMEE 766 (776)
Q Consensus 695 -------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~-~~~~~~~~~~~ 766 (776)
..+...........+++|+++++|++|..++.... ...+ ....+++++.+++ +|.. ...+..+++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~~~~~-~w~~---~~~~~~~~~~i~g-~H~~ml~~~~~~~va~ 220 (230)
T d1jmkc_ 146 GLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWLA-SWEE---ATTGAYRMKRGFG-THAEMLQGETLDRNAG 220 (230)
T ss_dssp HHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCTTEE-CSGG---GBSSCEEEEECSS-CGGGTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccccCcceeeeecCCcccchhHH-HHHH---hccCCcEEEEEcC-CChhhcCCccHHHHHH
Confidence 00000011123456789999999999998875422 2222 1235688889985 8974 22234477888
Q ss_pred HHHHHHHHh
Q 004067 767 RIWEFIERT 775 (776)
Q Consensus 767 ~~~~fl~~~ 775 (776)
.|.+||+++
T Consensus 221 ~I~~~L~~~ 229 (230)
T d1jmkc_ 221 ILLEFLNTQ 229 (230)
T ss_dssp HHHHHHTCB
T ss_pred HHHHHHhhc
Confidence 888888653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.16 E-value=3.7e-08 Score=101.18 Aligned_cols=165 Identities=11% Similarity=-0.032 Sum_probs=108.5
Q ss_pred CeeeEEEeecCCCceEEEEe------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----------
Q 004067 126 GVTRYEWVKTSSKKKIIMVP------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD---------- 189 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~---------- 189 (776)
.+....+|| ||+++++. ...+||++|.++++....+..+ ....+.|||||++|++...
T Consensus 22 p~~~~a~sp---dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~---~~~~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 22 PTNDEAPGA---DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG---FLPNPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred CccccccCC---CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC---CCccEEEcCCCCEEEEEeecCCccccccc
Confidence 355677899 99999886 3357999999999877444332 2346899999999998753
Q ss_pred -CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 190 -CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 190 -~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
+.|.+||+.+++.......+......... ....+.|+|||+.+++...+..
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~----------~~~~~~~s~dg~~~~v~~~~~~------------------ 147 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGP----------YSWMNANTPNNADLLFFQFAAG------------------ 147 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEecc----------CCCcEEEEeCCCcEEEEEEcCC------------------
Confidence 35999999999876654433321111110 0235789999999887664322
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..+.+++..+++..... .....+.++|||+.+++... .+..+.+|+..+
T Consensus 148 ----------------~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~g~~~~v~~~---~dg~~~~~~~~~ 196 (373)
T d2madh_ 148 ----------------PAVGLVVQGGSSDDQLL------------SSPTCYHIHPGAPSTFYLLC---AQGGLAKTDHAG 196 (373)
T ss_pred ----------------CceEEeeccCCeEEEEe------------ccceeEEEecCCCcEEEEEc---CCCeEEEEEcCC
Confidence 23456666665543321 12345789999986655443 345688899888
Q ss_pred CceEEEE
Q 004067 349 GQRKVIL 355 (776)
Q Consensus 349 g~~~~l~ 355 (776)
+......
T Consensus 197 ~~~~~~~ 203 (373)
T d2madh_ 197 GAAGAGL 203 (373)
T ss_pred ceeeEEE
Confidence 7765543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.10 E-value=6.6e-08 Score=101.21 Aligned_cols=265 Identities=12% Similarity=0.040 Sum_probs=154.3
Q ss_pred CceeCCCCCEEEEEECC------cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 174 DPHLSSDGTMIAFVRDC------ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 174 ~~~~SpDg~~la~~~~~------~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
...+||||+++||..+. .|+++|+++|+....+..... ...+.|++|++.|+|...
T Consensus 129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~------------------~~~~~W~~D~~~~~Y~~~ 190 (430)
T d1qfma1 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK------------------FSCMAWTHDGKGMFYNAY 190 (430)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC------------------SCCEEECTTSSEEEEEEC
T ss_pred ceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccccc------------------ccceEEcCCCCEEEEEEe
Confidence 35789999999998752 499999999986543321110 226789999999999886
Q ss_pred cCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE--EEEcccCCCCCCCCcceEEEEEeccCC
Q 004067 248 DSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS--WMDLQCGGTDQNYDEEYLARVNWMHGN 325 (776)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~SpDg 325 (776)
+...... .+ .. .+..-..+++++.+.+.... .+-.. .........+..|+||
T Consensus 191 ~~~~~~~-----~~-------~~--------~~~~~~~~v~~h~lgt~~~~d~~v~~e------~d~~~~~~~~~~s~d~ 244 (430)
T d1qfma1 191 PQQDGKS-----DG-------TE--------TSTNLHQKLYYHVLGTDQSEDILCAEF------PDEPKWMGGAELSDDG 244 (430)
T ss_dssp CCCSSCC-----SS-------SC--------CCCCCCCEEEEEETTSCGGGCEEEECC------TTCTTCEEEEEECTTS
T ss_pred ccccCcc-----cc-------cc--------cccCCcceEEEEECCCCcccccccccc------ccCCceEEeeeccCCc
Confidence 5421000 00 00 00011145777777665432 22111 2233456677889999
Q ss_pred eEEEEEEeec-CceEEEEEEECCCCc--------eEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCC-ceEE
Q 004067 326 ILTAQVLNRS-QTKLKVLKFDIKTGQ--------RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG-FRHL 395 (776)
Q Consensus 326 ~~l~~~~~~~-~~~~~l~~~d~~~g~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g-~~~l 395 (776)
+++++....+ .....++..|+.... ...+.......+. . +...++.+++.++.++ ...|
T Consensus 245 ~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~Tn~~a~~~~L 313 (430)
T d1qfma1 245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-------Y----VTNEGTVFTFKTNRHSPNYRL 313 (430)
T ss_dssp CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-------E----EEEETTEEEEEECTTCTTCEE
T ss_pred ceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceE-------E----EecCCceeecccCccccccee
Confidence 9777655443 234568888875432 1223222111111 0 1223456777776643 4589
Q ss_pred EEEeCCCcee---ecc-ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC--CeEE
Q 004067 396 YLHDINGTCL---GPI-TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK--GKHV 469 (776)
Q Consensus 396 ~~~~~~g~~~---~~l-t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~--~~~~ 469 (776)
+.++++.... +.+ ...+..+... .++..+++|++....++. ..|+.+++ .++ ....+.... .+..
T Consensus 314 ~~~~~~~~~~~~w~~vi~~~~~~~~~~-~~~~~~~~lvl~~~~~~~--~~l~v~~~--~~~----~~~~~~~~~~~sv~~ 384 (430)
T d1qfma1 314 INIDFTDPEESKWKVLVPEHEKDVLEW-VACVRSNFLVLCYLHDVK--NTLQLHDL--ATG----ALLKIFPLEVGSVVG 384 (430)
T ss_dssp EEEETTBCCGGGCEEEECCCSSCEEEE-EEEETTTEEEEEEEETTE--EEEEEEET--TTC----CEEEEECCCSSEEEE
T ss_pred EEecCCCCccccceEEecccCcceeee-EEEEECCEEEEEEEcCCE--eEEEEEEC--CCC----cEEEecCCCCceEee
Confidence 9998765432 233 3333323221 134445667766655543 57777887 343 333443322 2445
Q ss_pred EEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 470 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 470 ~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
++.+++...+.+.+++..+|+.+|.+|+.+++.
T Consensus 385 ~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred ccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 566788889999999999999999999998864
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.09 E-value=1.3e-10 Score=114.43 Aligned_cols=123 Identities=17% Similarity=0.140 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEE-EcCCCCCcccccccccccc-cCCCCC-----CccchhcCChhhh
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV-SGAPVTSWDGYDTFYTEKY-MGLPSE-----DPVGYEYSSVMHH 705 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~ 705 (776)
..+|++||+|+|+|+||+||+.++..+|+.|++++ .+++...+-.......... ...+.. ....+....+...
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhcccchHHHhhcCCCCCcChhHHHHHHhhcCCcch
Confidence 45899999999999999999999999999997443 3343322111111111110 011110 0111112222222
Q ss_pred hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC--CeEEEEecCCCCCC
Q 004067 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMP 755 (776)
Q Consensus 706 ~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~~~~~H~~ 755 (776)
......|++++||..|.+|++.++.++++.+++.+. +++++..++++|.+
T Consensus 86 ~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v~yv~~~gagH~f 137 (318)
T d2d81a1 86 ANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTF 137 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSE
T ss_pred hccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCceEEEEeCCCCCCC
Confidence 233357999999999999999999999999987643 68889999999987
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.08 E-value=5.1e-11 Score=117.66 Aligned_cols=204 Identities=13% Similarity=0.043 Sum_probs=116.7
Q ss_pred CCceEEEEEcCCC--CcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHH-HHH
Q 004067 552 PPYKTLISVYGGP--CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEW 628 (776)
Q Consensus 552 ~~~p~vl~~HG~~--~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~-i~~ 628 (776)
...|.|+++||.. ++.. .|..++..|.. ++.|+++|++|+|.+........ ...++++.+. ++.
T Consensus 58 ~~~~~l~c~~~~~~~g~~~-------~y~~la~~L~~-~~~V~al~~pG~~~~~~~~~~~~-----~~s~~~~a~~~~~~ 124 (283)
T d2h7xa1 58 EGRAVLVGCTGTAANGGPH-------EFLRLSTSFQE-ERDFLAVPLPGYGTGTGTGTALL-----PADLDTALDAQARA 124 (283)
T ss_dssp CCCCEEEEECCCCTTCSTT-------TTHHHHHTTTT-TCCEEEECCTTCCBC---CBCCE-----ESSHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCCCHH-------HHHHHHHhcCC-CceEEEEeCCCCCCCCCCccccc-----cCCHHHHHHHHHHH
Confidence 3558899999832 2221 33445566554 69999999999987653221111 1124444443 233
Q ss_pred HHHcCCCCCCcEEEEeechHHHHHHHHHhhC----CCceEEEEEcCCCCCcccc-ccc----cccccc-C--CCCCCcc-
Q 004067 629 LIKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAPVTSWDGY-DTF----YTEKYM-G--LPSEDPV- 695 (776)
Q Consensus 629 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----~~~~~~~v~~~~~~~~~~~-~~~----~~~~~~-~--~~~~~~~- 695 (776)
+.... ...++.|+||||||.+|+.+|.+. +..+.++++..+....... ... ...... . .......
T Consensus 125 i~~~~--~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (283)
T d2h7xa1 125 ILRAA--GDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARL 202 (283)
T ss_dssp HHHHH--TTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHhc--CCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHH
Confidence 43332 335799999999999999998753 4567788877654332110 000 000000 0 0000000
Q ss_pred ----chhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHH
Q 004067 696 ----GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 771 (776)
Q Consensus 696 ----~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f 771 (776)
.+...........+++|+++++|++|..++......+.+.+ ...++++.+++ +|.....+..+.+.+.|.+|
T Consensus 203 ~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~~~~~~~w~~~~---~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~ 278 (283)
T d2h7xa1 203 LAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHW---DLPHTVADVPG-DHFTMMRDHAPAVAEAVLSW 278 (283)
T ss_dssp HHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCCCGGGCCCSCCC---SSCSEEEEESS-CTTHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCeEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEEcC-CCcccccCCHHHHHHHHHHH
Confidence 00000001123567899999999999998876554443322 34578889987 78643345678888999999
Q ss_pred HHH
Q 004067 772 IER 774 (776)
Q Consensus 772 l~~ 774 (776)
|++
T Consensus 279 L~~ 281 (283)
T d2h7xa1 279 LDA 281 (283)
T ss_dssp HHH
T ss_pred HHh
Confidence 975
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=99.03 E-value=3.2e-10 Score=113.77 Aligned_cols=107 Identities=18% Similarity=0.125 Sum_probs=78.2
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
.++|+ |++||..++...... ...|..+...|+++||.|+++|+||+|.+.... ...+++.+.++.+.+
T Consensus 7 ~k~Pv-vlvHG~~g~~~~~~~-~~~~~~~~~~L~~~G~~V~~~~~~g~g~s~~~~----------~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 7 TRYPV-ILVHGLAGTDKFANV-VDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPN----------GRGEQLLAYVKQVLA 74 (319)
T ss_dssp CSSCE-EEECCTTBSSEETTT-EESSTTHHHHHHHTTCCEEECCCBCSSCTTSTT----------SHHHHHHHHHHHHHH
T ss_pred CCCCE-EEECCCCCCcchhhh-hhhHHHHHHHHHHCCCEEEEecCCCCCCCCCCc----------ccHHHHHHHHHHHHH
Confidence 46776 468997665432111 123455688999999999999999998764321 124556666666655
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
.. +.++|.++||||||.++..++.++|++++.++.+++.
T Consensus 75 ~~--~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p 113 (319)
T d1cvla_ 75 AT--GATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTP 113 (319)
T ss_dssp HH--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred Hh--CCCCEEEEeccccHHHHHHHHHHCccccceEEEECCC
Confidence 43 4579999999999999999999999999999987764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=3.7e-09 Score=104.43 Aligned_cols=265 Identities=11% Similarity=0.095 Sum_probs=160.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.++||| |+-.+. ...|.+||+.++.. .| ...+..+.+++
T Consensus 16 I~~l~~s~----l~sgs~-----Dg~v~~Wd~~~~~~----~h------------------------~~~V~~~~~~~-- 56 (287)
T d1pgua2 16 ITALTVNP----LISGSY-----DGRIMEWSSSSMHQ----DH------------------------SNLIVSLDNSK-- 56 (287)
T ss_dssp EEEEETTT----TEEEET-----TSCEEETTTTEEEC----CC------------------------CSCEEEEECCS--
T ss_pred eEEEEECc----EEEEeC-----CCeEEEEECCCCCC----CC------------------------CCCEEEEEecC--
Confidence 47788888 543332 34699999876532 11 23577788888
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCceec
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
++..+....++.|.+|++...+.. .......+++++..++......+.+++..+++.........
T Consensus 57 -~~~~~s~s~D~~v~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 121 (287)
T d1pgua2 57 -AQEYSSISWDDTLKVNGITKHEFG--------SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS------ 121 (287)
T ss_dssp -TTCCEEEETTTEEEETTEEEEECS--------SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS------
T ss_pred -CCeEEEEeeccccccccccccccc--------cceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc------
Confidence 777666667888888876542221 12455688999988888778889999988887654433221
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 296 (776)
....++|+++.++....+. ..+.+|++.+.+
T Consensus 122 --------------~~~~~~~~~~~~~v~~~~~-----------------------------------~~v~~~~~~~~~ 152 (287)
T d1pgua2 122 --------------PGSAVSLSQNYVAVGLEEG-----------------------------------NTIQVFKLSDLE 152 (287)
T ss_dssp --------------CEEEEEECSSEEEEEETTT-----------------------------------SCEEEEETTEEE
T ss_pred --------------eeeeeeccCcceeeecccc-----------------------------------ceeeeeeccccc
Confidence 1345788898888765432 125777776544
Q ss_pred eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE--EEeccCceeecccccccCCC
Q 004067 297 VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI--LVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~~~~~~~~~ 374 (776)
...... ......+..++|||||++|+... .+..|++||+.++..... ..+..... .-.|+|...
T Consensus 153 ~~~~~~-------~~~~~~v~~~~~s~~~~~l~~g~----~dg~i~i~d~~~~~~~~~~~~~h~~~v~---~~~~~p~~~ 218 (287)
T d1pgua2 153 VSFDLK-------TPLRAKPSYISISPSETYIAAGD----VMGKILLYDLQSREVKTSRWAFRTSKIN---AISWKPAEK 218 (287)
T ss_dssp EEEECS-------SCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEEECCSCCCSSCEE---EEEECCCC-
T ss_pred eeeeee-------eccCCceeEEEeccCcccccccc----ccccccceeecccccccccccccccccc---eeeeccccc
Confidence 332211 33455688999999999887665 344589999988765321 11111100 011333222
Q ss_pred Cc-c-ccCCeEEEEeccCCceEEEEEeCCC-ce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 375 GV-T-KYSGGFIWASEKTGFRHLYLHDING-TC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 375 ~~-~-~~~~~~~~~s~~~g~~~l~~~~~~g-~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
.. . ..++.++++...++ .|++|++.. ++ .+.+..+...+..+. |+++++ ++++..++. +.+|.+
T Consensus 219 ~~~~~~~~~~~l~sgs~D~--~i~iw~~~~~~~~~~~~~~h~~~V~~v~-~~~~~~--l~s~g~D~~--v~iW~i 286 (287)
T d1pgua2 219 GANEEEIEEDLVATGSLDT--NIFIYSVKRPMKIIKALNAHKDGVNNLL-WETPST--LVSSGADAC--IKRWNV 286 (287)
T ss_dssp -----CCSCCEEEEEETTS--CEEEEESSCTTCCEEETTSSTTCEEEEE-EEETTE--EEEEETTSC--EEEEEE
T ss_pred ccccccCCCCeeEeecCCC--eEEEEECCCCCeEEEEeCCCCCCeEEEE-ECCCCE--EEEEECCCe--EEEEEE
Confidence 10 1 12334555556677 899999754 33 344455556677664 888875 445555544 888876
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=99.00 E-value=1.2e-09 Score=107.35 Aligned_cols=157 Identities=13% Similarity=0.033 Sum_probs=96.5
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
+.| |||+||...+... .| +..+++.|+++||.|+.+|++|+|...... ..+++..+++++.+.
T Consensus 31 ~~P-VvlvHG~~~~~~~--~~---~~~~~~~L~~~Gy~v~~~d~~g~g~~d~~~-----------sae~la~~i~~v~~~ 93 (317)
T d1tcaa_ 31 SKP-ILLVPGTGTTGPQ--SF---DSNWIPLSTQLGYTPCWISPPPFMLNDTQV-----------NTEYMVNAITALYAG 93 (317)
T ss_dssp SSE-EEEECCTTCCHHH--HH---TTTHHHHHHTTTCEEEEECCTTTTCSCHHH-----------HHHHHHHHHHHHHHH
T ss_pred CCc-EEEECCCCCCCcc--hh---HHHHHHHHHhCCCeEEEecCCCCCCCchHh-----------HHHHHHHHHHHHHHh
Confidence 445 5778996554321 11 233578999999999999999887543211 145678888888776
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEcCCCCCcccccccccccccCCCCCCccchh--cCCh-hhhh
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE--YSSV-MHHV 706 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~ 706 (776)
. ..++|.|+||||||.++.+++..+| ++++.+|.+++...-..+...+.... ...+..+. ..+. +..+
T Consensus 94 ~--g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~~Gt~~a~~~~~~~----~~~pa~~q~~~~s~fl~~L 167 (317)
T d1tcaa_ 94 S--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALA----VSAPSVWQQTTGSALTTAL 167 (317)
T ss_dssp T--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHHTT----CBCHHHHHTBTTCHHHHHH
T ss_pred c--cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCCCCcccccchhhhh----ccCchhhhhcCCcHHHHHH
Confidence 4 3468999999999999999999887 46888888776543211111100000 00000000 0011 1111
Q ss_pred ---cc--CCCcEEEEecCCCCccChHHHHHH
Q 004067 707 ---HK--MKGKLLLVHGMIDENVHFRHTARL 732 (776)
Q Consensus 707 ---~~--i~~P~lii~G~~D~~v~~~~~~~~ 732 (776)
.. -..|++.|++..|.+|.+..+..+
T Consensus 168 ~~~~~~~~~V~~t~I~s~~D~iV~P~~~~~~ 198 (317)
T d1tcaa_ 168 RNAGGLTQIVPTTNLYSATDEIVQPQVSNSP 198 (317)
T ss_dssp HHTTTTBCSSCEEEEECTTCSSSCCCCSSST
T ss_pred HhCCCCCCCCCEEEEecCCCcccCccccchh
Confidence 11 125899999999999988755443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.98 E-value=1.7e-07 Score=94.63 Aligned_cols=275 Identities=11% Similarity=0.045 Sum_probs=161.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++||||+ .|+..+. ...|.+|+....+......... .........+++
T Consensus 56 V~~l~~s~~~-~l~s~s~-----D~~i~iw~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~-- 106 (355)
T d1nexb2 56 VWALKYAHGG-ILVSGST-----DRTVRVWDIKKGCCTHVFEGHN---------------------STVRCLDIVEYK-- 106 (355)
T ss_dssp EEEEEEETTT-EEEEEET-----TCCEEEEETTTTEEEEEECCCS---------------------SCEEEEEEEEET--
T ss_pred EEEEEEcCCC-EEEEEec-----cccccccccccccccccccccc---------------------cccccccccccc--
Confidence 5789999976 4554333 2469999999887655443211 011234456777
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCC----------C----------CccCceeCCCCCEEEEEEC-CcEEE
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSC----------S----------PVIDPHLSSDGTMIAFVRD-CELHV 194 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~----------~----------~~~~~~~SpDg~~la~~~~-~~l~~ 194 (776)
+++.++.. .++.|.+||+.++........... . ......+.++|+.++.... ..+.+
T Consensus 107 -~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~ 185 (355)
T d1nexb2 107 -NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185 (355)
T ss_dssp -TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred -ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeee
Confidence 89988875 778899999987654311110000 0 0111345677887777664 46899
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
+++.+++.......... ......|+|+++.++....+
T Consensus 186 ~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~d-------------------------- 222 (355)
T d1nexb2 186 WDVAQMKCLYILSGHTD-----------------RIYSTIYDHERKRCISASMD-------------------------- 222 (355)
T ss_dssp EETTTTEEEEEECCCSS-----------------CEEEEEEETTTTEEEEEETT--------------------------
T ss_pred eecccccceeeeecccc-----------------ccccccccccceeeeccccc--------------------------
Confidence 99988876544332211 13367799999988876643
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|++||..+++....- ..+...+..++|++ +.++... .+..|.+||++++.....
T Consensus 223 ----------~~i~i~d~~~~~~~~~~--------~~h~~~v~~~~~~~--~~l~~~~----~dg~i~iwd~~~~~~~~~ 278 (355)
T d1nexb2 223 ----------TTIRIWDLENGELMYTL--------QGHTALVGLLRLSD--KFLVSAA----ADGSIRGWDANDYSRKFS 278 (355)
T ss_dssp ----------SCEEEEETTTCCEEEEE--------CCCSSCCCEEEECS--SEEEEEC----TTSEEEEEETTTCCEEEE
T ss_pred ----------ceEEeeecccccccccc--------cccccccccccccc--ceeeeee----cccccccccccccceecc
Confidence 23789999888765431 34555667777764 4565554 345699999988765443
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee--ccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG--PITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~--~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.. ....... ..+. .++.++..+ .+| .|++||+.+++.. .+..+...+..+. |+++ .+++..
T Consensus 279 ~~-~~~~~~~--~~~~--------~~~~~l~~g-~d~--~i~vwd~~tg~~~~~~~~~~~~~V~~v~-~~~~--~~~~~~ 341 (355)
T d1nexb2 279 YH-HTNLSAI--TTFY--------VSDNILVSG-SEN--QFNIYNLRSGKLVHANILKDADQIWSVN-FKGK--TLVAAV 341 (355)
T ss_dssp EE-CTTCCCC--CEEE--------ECSSEEEEE-ETT--EEEEEETTTCCBCCSCTTTTCSEEEEEE-EETT--EEEEEE
T ss_pred cc-cCCceEE--EEEc--------CCCCEEEEE-eCC--EEEEEECCCCCEEEEEecCCCCCEEEEE-EcCC--eEEEEE
Confidence 33 2221110 0111 134455444 455 8999998877643 3444555666654 7764 466665
Q ss_pred ccCCCceeeEEEEEe
Q 004067 433 TLDGPLESHLYCAKL 447 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~ 447 (776)
..++. ..||.++.
T Consensus 342 s~dg~--~~l~~~df 354 (355)
T d1nexb2 342 EKDGQ--SFLEILDF 354 (355)
T ss_dssp ESSSC--EEEEEEEC
T ss_pred ECCCc--EEEEEEeC
Confidence 65654 66777764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=3.8e-08 Score=98.82 Aligned_cols=280 Identities=9% Similarity=-0.008 Sum_probs=150.9
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecC--CCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLS--SSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~ 199 (776)
.+|.++.|+| ||++|+.. .|+.|.+||++++.....+. ......+...+|+|++..++++. ++.+.+|++..
T Consensus 12 d~I~~l~fsp---~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 12 DYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp SCEEEEEEEG---GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCEEEEEEeC---CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence 5799999999 99999976 78899999998765431221 11223478899999877666654 45799999988
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+............ ......+.+++..++....+
T Consensus 89 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~------------------------------- 121 (342)
T d1yfqa_ 89 SPSFQALTNNEAN----------------LGICRICKYGDDKLIAASWD------------------------------- 121 (342)
T ss_dssp SSSEEECBSCCCC----------------SCEEEEEEETTTEEEEEETT-------------------------------
T ss_pred ccccccccccccc----------------cccccccccccccccccccc-------------------------------
Confidence 7665543322210 01123455666666655432
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-Eec
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEE 358 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~ 358 (776)
..+.+||+.++........... ............+.+++..++... .+..|.+||+.++...... ...
T Consensus 122 -----~~~~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~~~~~~~ 190 (342)
T d1yfqa_ 122 -----GLIEVIDPRNYGDGVIAVKNLN--SNNTKVKNKIFTMDTNSSRLIVGM----NNSQVQWFRLPLCEDDNGTIEES 190 (342)
T ss_dssp -----SEEEEECHHHHTTBCEEEEESC--SSSSSSCCCEEEEEECSSEEEEEE----STTEEEEEESSCCTTCCCEEEEC
T ss_pred -----cccceeeccccccceeeecccc--cccccceeeeeeeeccCCceeeec----CCCcEEEEecccCcccceeeeec
Confidence 3467777654332111110000 011112233456777777666655 3456888998766542221 111
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee----------------ccccCCeEEEEEEeec
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG----------------PITEGDWMVEQIVGVN 422 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~----------------~lt~~~~~~~~~~~~s 422 (776)
..........+.+ .++..+.....+| .+.+++.+..... ....+...+..+ .|+
T Consensus 191 ~~~~~~~~~~~~~-------~~~~~~~~~s~dg--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~s 260 (342)
T d1yfqa_ 191 GLKYQIRDVALLP-------KEQEGYACSSIDG--RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI-EFS 260 (342)
T ss_dssp SCSSCEEEEEECS-------GGGCEEEEEETTS--EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE-EEC
T ss_pred ccccceeeeEeec-------CCCCEEEeecCCC--eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeE-Eec
Confidence 1100000000001 1223444455566 4444443322110 011122234444 599
Q ss_pred CCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 423 EASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
|++++| +++..++. +.+|.+. .+. .+..+........++|+|+|+.|+...+.
T Consensus 261 p~~~~l-asg~~Dg~--v~vWD~~---~~~----~l~~~~~~~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 261 PRHKFL-YTAGSDGI--ISCWNLQ---TRK----KIKNFAKFNEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp TTTCCE-EEEETTSC--EEEEETT---TTE----EEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred CCccEE-EEECCCCE--EEEEECC---CCc----EEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence 999964 55555543 7777654 222 44455444445567999999999887654
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.89 E-value=2.1e-09 Score=105.21 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=74.2
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
.++| ||++||..+...... ...|..+.+.|.+.||.|+++|++|++.+.. ..+++.+.|+.+.+
T Consensus 6 ~~~P-vvlvHG~~g~~~~~~--~~yw~~i~~~L~~~G~~v~~~~~~~~~~~~~-------------~a~~l~~~i~~~~~ 69 (285)
T d1ex9a_ 6 TKYP-IVLAHGMLGFDNILG--VDYWFGIPSALRRDGAQVYVTEVSQLDTSEV-------------RGEQLLQQVEEIVA 69 (285)
T ss_dssp CSSC-EEEECCTTCCSEETT--EESSTTHHHHHHHTTCCEEEECCCSSSCHHH-------------HHHHHHHHHHHHHH
T ss_pred CCCC-EEEECCCCCCccccc--hhhHHHHHHHHHhCCCEEEEeCCCCCCCcHH-------------HHHHHHHHHHHHHH
Confidence 5778 688899665432111 1234557889999999999999998764321 12345555555544
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
.. ..+++.++||||||.++..++.++|++++.++.++..
T Consensus 70 ~~--g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 70 LS--GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp HH--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred Hc--CCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 42 3468999999999999999999999999999877654
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=7e-10 Score=109.27 Aligned_cols=89 Identities=16% Similarity=0.029 Sum_probs=56.3
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
.|+++||++++.. .|..++. ..++.|+++|.||+|.+..- .. ...++...+ .+..
T Consensus 27 Pl~l~Hg~~gs~~-------~~~~l~~---~L~~~v~~~d~~g~~~~~~~--~~--------~a~~~~~~~---~~~~-- 81 (286)
T d1xkta_ 27 PLFLVHPIEGSTT-------VFHSLAS---RLSIPTYGLQCTRAAPLDSI--HS--------LAAYYIDCI---RQVQ-- 81 (286)
T ss_dssp CEEEECCTTCCCG-------GGHHHHH---TCSSCEEEECCCTTSCCSCH--HH--------HHHHHHHHH---HHHC--
T ss_pred eEEEECCCCccHH-------HHHHHHH---HcCCeEEEEeCCCCCCCCCH--HH--------HHHHHHHHH---HHhc--
Confidence 3778999887754 2333333 34789999999999876421 10 123333333 3322
Q ss_pred CCCcEEEEeechHHHHHHHHHhhCCCceEEEEEc
Q 004067 636 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG 669 (776)
Q Consensus 636 d~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~ 669 (776)
...++.++||||||.+|+.+|.++|+++..++..
T Consensus 82 ~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l 115 (286)
T d1xkta_ 82 PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTH 115 (286)
T ss_dssp CSSCCEEEEETHHHHHHHHHHHHHHHC------C
T ss_pred CCCceEEeecCCccHHHHHHHHHHHHcCCCceeE
Confidence 3468999999999999999999999877665543
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.88 E-value=2.6e-09 Score=88.40 Aligned_cols=95 Identities=17% Similarity=0.021 Sum_probs=66.5
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
-+|.++++.... .-|.||++||.. ..|. +.| ..+|.|+++|+||+|.|..+
T Consensus 8 ~~G~~l~y~~~G---------~G~pvlllHG~~------~~w~-------~~L-~~~yrvi~~DlpG~G~S~~p------ 58 (122)
T d2dsta1 8 LYGLNLVFDRVG---------KGPPVLLVAEEA------SRWP-------EAL-PEGYAFYLLDLPGYGRTEGP------ 58 (122)
T ss_dssp ETTEEEEEEEEC---------CSSEEEEESSSG------GGCC-------SCC-CTTSEEEEECCTTSTTCCCC------
T ss_pred ECCEEEEEEEEc---------CCCcEEEEeccc------cccc-------ccc-cCCeEEEEEeccccCCCCCc------
Confidence 378888888775 226788899832 1232 223 46999999999999988532
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 661 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~ 661 (776)
....+++.+.+..+.+.- +.++..++||||||.+++.+++..+.
T Consensus 59 ----~~s~~~~a~~i~~ll~~L--~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 59 ----RMAPEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp ----CCCHHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred ----ccccchhHHHHHHHHHHh--CCCCcEEEEeCccHHHHHHHHhhccc
Confidence 123455555555555543 44688999999999999999987544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.83 E-value=1.5e-07 Score=94.40 Aligned_cols=113 Identities=10% Similarity=-0.000 Sum_probs=75.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEe---ecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELV---FSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
++.++|||||++||-.+. + ..|.+||++++.. ..+ ..| ...+....|
T Consensus 14 I~~l~fsp~~~~L~s~s~-D----g~v~iwd~~~~~~~~~~~~~~~h------------------------~~~V~~v~f 64 (342)
T d1yfqa_ 14 ISDIKIIPSKSLLLITSW-D----GSLTVYKFDIQAKNVDLLQSLRY------------------------KHPLLCCNF 64 (342)
T ss_dssp EEEEEEEGGGTEEEEEET-T----SEEEEEEEETTTTEEEEEEEEEC------------------------SSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEEC-C----CeEEEEEccCCCcceEEEEecCC------------------------CCCEEEEEE
Confidence 489999999999997654 2 4699999876543 222 222 246889999
Q ss_pred eecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCc
Q 004067 133 VKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINE 201 (776)
Q Consensus 133 sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~ 201 (776)
+| ++..++++ .++.|.+|++..+..................+.+++..++.... ..+.+|++.++.
T Consensus 65 ~~---~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~ 133 (342)
T d1yfqa_ 65 ID---NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp EE---SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred eC---CCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence 99 86654443 78899999998887763333322222334455667777777664 468888886543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.73 E-value=1.5e-06 Score=86.51 Aligned_cols=252 Identities=8% Similarity=0.007 Sum_probs=143.4
Q ss_pred eeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-----CCcEEEEecCC
Q 004067 127 VTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-----DCELHVLNLLI 199 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-----~~~l~~~~l~~ 199 (776)
...+.|.+ ||+ |++. ..+.|++++.++++....+..... ....++++|||+.++... ...++..+..+
T Consensus 42 lEG~~~D~---~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~-~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 42 LEGLNFDR---QGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKA-NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp EEEEEECT---TSC-EEEEETTTCEEEEECTTTCCEEEEEECSSS-SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred cEeCEECC---CCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCC-CeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence 34688999 997 6665 567899999999876522322222 356789999998544322 12477777777
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+....+....... .+...+++.|||+ |++.......
T Consensus 117 ~~~~~~~~~~~~~---------------~~~nd~~~d~~G~-l~vtd~~~~~---------------------------- 152 (319)
T d2dg1a1 117 DNLQDIIEDLSTA---------------YCIDDMVFDSKGG-FYFTDFRGYS---------------------------- 152 (319)
T ss_dssp CSCEEEECSSSSC---------------CCEEEEEECTTSC-EEEEECCCBT----------------------------
T ss_pred ceeeeeccCCCcc---------------cCCcceeEEeccc-eeeccccccc----------------------------
Confidence 7766554332210 1133677999997 6554321110
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC--ceEEEEEe
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG--QRKVILVE 357 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~ 357 (776)
......++.++.+++....+... ...-..++|+|||+.|+++... ...|+++|++.. ........
T Consensus 153 -~~~~g~v~~~~~dg~~~~~~~~~---------~~~pnGia~s~dg~~lyvad~~---~~~I~~~d~~~~g~~~~~~~~~ 219 (319)
T d2dg1a1 153 -TNPLGGVYYVSPDFRTVTPIIQN---------ISVANGIALSTDEKVLWVTETT---ANRLHRIALEDDGVTIQPFGAT 219 (319)
T ss_dssp -TBCCEEEEEECTTSCCEEEEEEE---------ESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSSSEEEEEEE
T ss_pred -ccCcceeEEEecccceeEEEeec---------cceeeeeeeccccceEEEeccc---CCceEEEEEcCCCceeccccce
Confidence 01125678888888776665321 1234568999999977766432 335888887532 22222111
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCceeeccccCC------eEEEEEEeecCCCcEEEE
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPITEGD------WMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~~~~lt~~~------~~~~~~~~~s~dg~~i~~ 430 (776)
....+ ..... +.++..|.++-+|+++ ..+ .|.+++.+|.....+.-.. ...... .+.+++..++.
T Consensus 220 ~~~~~---~~~~~--PdGl~vD~~G~l~Va~~~~g--~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~-~~~~~~~~~~~ 291 (319)
T d2dg1a1 220 IPYYF---TGHEG--PDSCCIDSDDNLYVAMYGQG--RVLVFNKRGYPIGQILIPGRDEGHMLRSTHP-QFIPGTNQLII 291 (319)
T ss_dssp EEEEC---CSSSE--EEEEEEBTTCCEEEEEETTT--EEEEECTTSCEEEEEECTTGGGTCSCBCCEE-EECTTSCEEEE
T ss_pred eeecc---CCccc--eeeeeEcCCCCEEEEEcCCC--EEEEECCCCcEEEEEeCCCcCCCcCceeeeE-EEeCCCCEEEE
Confidence 00000 00011 1233444444455554 344 8999999887666553221 112233 47777777777
Q ss_pred EEcc-CCCceeeEEEEEeC
Q 004067 431 TGTL-DGPLESHLYCAKLY 448 (776)
Q Consensus 431 ~~~~-~~~~~~~l~~~~~~ 448 (776)
++.. +.+....||+++..
T Consensus 292 t~~~~~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 292 CSNDIEMGGGSMLYTVNGF 310 (319)
T ss_dssp EEECGGGTCCEEEEEEECS
T ss_pred EcCCCCcCCceeEEEEeCC
Confidence 6543 22334679999873
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.69 E-value=2.6e-06 Score=84.06 Aligned_cols=232 Identities=11% Similarity=0.088 Sum_probs=125.1
Q ss_pred ccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 172 VIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
+..++++|||+. .++. .+.||.++.++. .+.+...... ...++|+|||+ |+......
T Consensus 30 ~e~iAv~pdG~l-~vt~~~~~~I~~i~p~g~-~~~~~~~~~~------------------~~gla~~~dG~-l~v~~~~~ 88 (302)
T d2p4oa1 30 LENLASAPDGTI-FVTNHEVGEIVSITPDGN-QQIHATVEGK------------------VSGLAFTSNGD-LVATGWNA 88 (302)
T ss_dssp EEEEEECTTSCE-EEEETTTTEEEEECTTCC-EEEEEECSSE------------------EEEEEECTTSC-EEEEEECT
T ss_pred cCCEEECCCCCE-EEEeCCCCEEEEEeCCCC-EEEEEcCCCC------------------cceEEEcCCCC-eEEEecCC
Confidence 567899999984 3333 246999987754 4444333221 34788999998 44443322
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc--CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeE
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA--AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL 327 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~ 327 (776)
.. +++++. ..+....+.. .........+.+.+||++
T Consensus 89 ~~-----------------------------------~~~~~~~~~~~~~~~~~~-------~~~~~~~n~i~~~~~g~~ 126 (302)
T d2p4oa1 89 DS-----------------------------------IPVVSLVKSDGTVETLLT-------LPDAIFLNGITPLSDTQY 126 (302)
T ss_dssp TS-----------------------------------CEEEEEECTTSCEEEEEE-------CTTCSCEEEEEESSSSEE
T ss_pred ce-----------------------------------EEEEEecccccceeeccc-------cCCccccceeEEccCCCE
Confidence 21 222222 2233333322 123344567889999975
Q ss_pred EEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-
Q 004067 328 TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG- 406 (776)
Q Consensus 328 l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~- 406 (776)
++.. . ....++.+|+.++.................. ......++.++++.+|+.....+ .|++++.++....
T Consensus 127 ~v~~--~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ngi~~~~~~l~~~~~~~~--~i~~~~~~~~~~~~ 199 (302)
T d2p4oa1 127 LTAD--S--YRGAIWLIDVVQPSGSIWLEHPMLARSNSES-VFPAANGLKRFGNFLYVSNTEKM--LLLRIPVDSTDKPG 199 (302)
T ss_dssp EEEE--T--TTTEEEEEETTTTEEEEEEECGGGSCSSTTC-CSCSEEEEEEETTEEEEEETTTT--EEEEEEBCTTSCBC
T ss_pred Eeec--c--ccccceeeeccCCcceeEecCCccceeeccC-cccccccccccCCceeeecCCCC--eEEecccccccccc
Confidence 4322 2 3456999999988876655543221111100 01111223455566666655555 8999987654311
Q ss_pred ---ccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec-CCCCeEEEEE---cCCcCEE
Q 004067 407 ---PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-NGKGKHVAVL---DHNMRNF 479 (776)
Q Consensus 407 ---~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~-~~~~~~~~~~---spdg~~l 479 (776)
...... ...++ .+++||+ ||+.....+ .|++++. +|+. ..+..+. ...+...++| ++|++.|
T Consensus 200 ~~~~~~~~~-~pdgi-a~d~dG~-l~va~~~~~----~V~~i~p--~G~~--~~~~~~~~~~~~pt~vafg~~~~D~~~L 268 (302)
T d2p4oa1 200 EPEIFVEQT-NIDDF-AFDVEGN-LYGATHIYN----SVVRIAP--DRST--TIIAQAEQGVIGSTAVAFGQTEGDCTAI 268 (302)
T ss_dssp CCEEEEESC-CCSSE-EEBTTCC-EEEECBTTC----CEEEECT--TCCE--EEEECGGGTCTTEEEEEECCSTTTTTEE
T ss_pred ccccccCCC-CCcce-EECCCCC-EEEEEcCCC----cEEEECC--CCCE--EEEEecCCCCCCceEEEEcCCCCCCCEE
Confidence 111111 11223 4889997 666655443 5888876 5530 0111122 2224567899 7899887
Q ss_pred EEEee
Q 004067 480 VDFHD 484 (776)
Q Consensus 480 ~~~~~ 484 (776)
..+.+
T Consensus 269 yvtt~ 273 (302)
T d2p4oa1 269 YVVTN 273 (302)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 76644
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.66 E-value=1.7e-05 Score=80.32 Aligned_cols=270 Identities=9% Similarity=0.007 Sum_probs=125.1
Q ss_pred ccCceeCCCCCEEEEEECCcEE--EEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 172 VIDPHLSSDGTMIAFVRDCELH--VLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~~l~--~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
...+.+|||++.|..+..+.+. .++.+++........... . ...+..+|||+.++....+.
T Consensus 42 ~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~-----------p~~v~~~~~~~~~~v~~a~~ 104 (365)
T d1jofa_ 42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGG------H-----------PRANDADTNTRAIFLLAAKQ 104 (365)
T ss_dssp CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCS------S-----------GGGGCTTSCCEEEEEEECSS
T ss_pred CCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCC------C-----------cEEEEECCCCCEEEEEEecC
Confidence 4668999999988777766554 444444433333221111 0 12455899999776554332
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEE
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTA 329 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~ 329 (776)
........+..... ....++-.+..+......... ......+...+.|+|||++++
T Consensus 105 ~~~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-----~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 105 PPYAVYANPFYKFA-------------------GYGNVFSVSETGKLEKNVQNY-----EYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp TTCCEEEEEESSSC-------------------CEEEEEEECTTCCEEEEEEEE-----ECCTTCCEEEEEECTTSSEEE
T ss_pred CCCEEEEeEccCCC-------------------CcceeEeeeecceecCcccCc-----ccCCCCcceEEEECCCCCEEE
Confidence 22222222211111 112233333222111111110 022334567899999999776
Q ss_pred EEEeecCceEEEEEEECC-CCceEEEEEeccC--ceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCcee
Q 004067 330 QVLNRSQTKLKVLKFDIK-TGQRKVILVEELD--SWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTCL 405 (776)
Q Consensus 330 ~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~~ 405 (776)
.. +.+.+. |++++.. +|....+...... .-....-.|.| ++.++|++ +.++ .|.+++.++++.
T Consensus 161 v~-d~g~d~--v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p--------dg~~~yv~~e~~~--~V~v~~~~~~~~ 227 (365)
T d1jofa_ 161 SA-DLTANK--LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP--------TGNYLYALMEAGN--RICEYVIDPATH 227 (365)
T ss_dssp EE-ETTTTE--EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT--------TSSEEEEEETTTT--EEEEEEECTTTC
T ss_pred Ee-eCCCCE--EEEEEccCCCceeeccceeecCCCCceEEEEECC--------CCceEEEeccCCC--EEEEEEecCCCc
Confidence 65 444343 5555433 3444333221111 00000011222 23344444 4455 666666554321
Q ss_pred ec--------ccc-----------CCeEEEEEEeecCCCcEEEEEEccCC-CceeeEEEEEeCCCCCCccccceee----
Q 004067 406 GP--------ITE-----------GDWMVEQIVGVNEASGQVYFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKL---- 461 (776)
Q Consensus 406 ~~--------lt~-----------~~~~~~~~~~~s~dg~~i~~~~~~~~-~~~~~l~~~~~~~~g~~~~~~~~~l---- 461 (776)
.. +.. ........+.++|||++||.....+. .....|...++...|. +.....+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~ 305 (365)
T d1jofa_ 228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS--IEKQLFLSPTP 305 (365)
T ss_dssp CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC--EEEEEEEEECS
T ss_pred eEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc--eeeEeEeeEEE
Confidence 11 100 01111233458999999888765322 1223344444422332 0111111
Q ss_pred cCCCCeEEEEEcC-CcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 462 TNGKGKHVAVLDH-NMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 462 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
+.+.....++++| ||++|+......+ .|.+++..+.
T Consensus 306 ~~G~~p~~i~~~p~~G~~l~va~~~s~---~v~v~~~~~~ 342 (365)
T d1jofa_ 306 TSGGHSNAVSPCPWSDEWMAITDDQEG---WLEIYRWKDE 342 (365)
T ss_dssp SCCTTCCCEEECTTCTTEEEEECSSSC---EEEEEEEETT
T ss_pred cCCCCccEEEecCCCCCEEEEEeCCCC---eEEEEEEeCC
Confidence 1222345689998 8988777755433 5777665443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.66 E-value=1.9e-06 Score=87.56 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=77.3
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.++.+++||||+.|+-... . ....|.++.+++....... .. +.+.....+++
T Consensus 41 ~~s~la~s~d~~~ly~~~~-~---~~~~~~i~~~~~~~~~~~~-~~----------------------~~~p~~v~~~~- 92 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAM-K---KWSSFAVKSPTEIVHEASH-PI----------------------GGHPRANDADT- 92 (365)
T ss_dssp CCSEEEECTTSSEEEEEEB-T---EEEEEEEEETTEEEEEEEE-EC----------------------CSSGGGGCTTS-
T ss_pred CCCEEEEcCCCCEEEEEeC-C---cEEEEEEeCCCCeEEEeee-cC----------------------CCCcEEEEECC-
Confidence 3467899999998875533 2 2467777776665433332 11 11223345667
Q ss_pred CCCceEEEEe----CCCcEEEEeCC--CCc-----------cc---eecCCCCCCCccCceeCCCCCEEEEEEC--CcEE
Q 004067 136 SSKKKIIMVP----LPDGIYFQDLS--CSK-----------PE---LKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELH 193 (776)
Q Consensus 136 ~~dg~~l~~~----~~~~l~~~d~~--~~~-----------~~---~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~ 193 (776)
||+.+++. ..+.++.+.+. ++. .. ..........+..+.|||||++++.... +.|+
T Consensus 93 --~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~ 170 (365)
T d1jofa_ 93 --NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLW 170 (365)
T ss_dssp --CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred --CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEE
Confidence 88866543 23445443321 111 00 0000011123567899999999877764 3588
Q ss_pred EEecCC-CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 194 VLNLLI-NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 194 ~~~l~~-g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
+++... |........... ..| ...+.++|+|||+.++...
T Consensus 171 ~~~~~~~g~~~~~~~~~~~---~~g----------~gPr~i~f~pdg~~~yv~~ 211 (365)
T d1jofa_ 171 THRKLASGEVELVGSVDAP---DPG----------DHPRWVAMHPTGNYLYALM 211 (365)
T ss_dssp EEEECTTSCEEEEEEEECS---STT----------CCEEEEEECTTSSEEEEEE
T ss_pred EEEccCCCceeeccceeec---CCC----------CceEEEEECCCCceEEEec
Confidence 876543 333322110000 000 1134788999999665443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.65 E-value=5.6e-06 Score=81.09 Aligned_cols=245 Identities=9% Similarity=0.001 Sum_probs=147.2
Q ss_pred eeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEE
Q 004067 128 TRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQL 205 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~l 205 (776)
..+.|++ +...|+|. ..+.|+.+|.++++.+ .+.... ......+.+||..+ +...+.|+++|+++|+.+.+
T Consensus 21 Egp~wd~---~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~--~~~~i~~~~dg~l~-va~~~gl~~~d~~tg~~~~l 93 (295)
T d2ghsa1 21 EGPTFDP---ASGTAWWFNILERELHELHLASGRKT-VHALPF--MGSALAKISDSKQL-IASDDGLFLRDTATGVLTLH 93 (295)
T ss_dssp EEEEEET---TTTEEEEEEGGGTEEEEEETTTTEEE-EEECSS--CEEEEEEEETTEEE-EEETTEEEEEETTTCCEEEE
T ss_pred eCCeEEC---CCCEEEEEECCCCEEEEEECCCCeEE-EEECCC--CcEEEEEecCCCEE-EEEeCccEEeecccceeeEE
Confidence 3578998 88888887 6788999999999876 443222 35677888888644 45677899999999998887
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
....... + .-+.......|+|+ |++........ ....
T Consensus 94 ~~~~~~~------~-------~~~~nd~~vd~~G~-iw~~~~~~~~~-----------------------------~~~g 130 (295)
T d2ghsa1 94 AELESDL------P-------GNRSNDGRMHPSGA-LWIGTMGRKAE-----------------------------TGAG 130 (295)
T ss_dssp ECSSTTC------T-------TEEEEEEEECTTSC-EEEEEEETTCC-----------------------------TTCE
T ss_pred eeeecCC------C-------cccceeeEECCCCC-EEEEecccccc-----------------------------ccce
Confidence 6432210 0 01134667899997 55555332110 0112
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC--Cc----eEEEEEecc
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT--GQ----RKVILVEEL 359 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~--g~----~~~l~~~~~ 359 (776)
.++.+..++...+.. .......+.||+|++.+++... ....|+.++++. +. .........
T Consensus 131 --~l~~~~~g~~~~~~~---------~~~~~Ng~~~s~d~~~l~~~dt---~~~~I~~~~~d~~~~~~~~~~~~~~~~~~ 196 (295)
T d2ghsa1 131 --SIYHVAKGKVTKLFA---------DISIPNSICFSPDGTTGYFVDT---KVNRLMRVPLDARTGLPTGKAEVFIDSTG 196 (295)
T ss_dssp --EEEEEETTEEEEEEE---------EESSEEEEEECTTSCEEEEEET---TTCEEEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred --eEeeecCCcEEEEee---------ccCCcceeeecCCCceEEEeec---ccceeeEeeecccccccccceEEEeccCc
Confidence 333344566655532 1223456899999997776643 234588877643 21 222222111
Q ss_pred CceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCceeeccccCCeEEEEEEee-cCCCcEEEEEEccCC-
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGV-NEASGQVYFTGTLDG- 436 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~-s~dg~~i~~~~~~~~- 436 (776)
.. ..+.++..|.++-+|++. ..| .|++++++|.....+.-....+.+.. | -+|.+.||+++...+
T Consensus 197 ~~---------g~pdG~~vD~~GnlWva~~~~g--~V~~~dp~G~~~~~i~lP~~~~T~~~-FGG~d~~~LyvTta~~~~ 264 (295)
T d2ghsa1 197 IK---------GGMDGSVCDAEGHIWNARWGEG--AVDRYDTDGNHIARYEVPGKQTTCPA-FIGPDASRLLVTSAREHL 264 (295)
T ss_dssp SS---------SEEEEEEECTTSCEEEEEETTT--EEEEECTTCCEEEEEECSCSBEEEEE-EESTTSCEEEEEEBCTTC
T ss_pred cc---------ccccceEEcCCCCEEeeeeCCC--ceEEecCCCcEeeEecCCCCceEEEE-EeCCCCCEEEEEECCcCC
Confidence 10 011222334444555554 344 89999999988877766544455554 5 478899999876532
Q ss_pred --------CceeeEEEEEeC
Q 004067 437 --------PLESHLYCAKLY 448 (776)
Q Consensus 437 --------~~~~~l~~~~~~ 448 (776)
|..-.||++.+.
T Consensus 265 ~~~~~~~~p~~G~l~~~~~~ 284 (295)
T d2ghsa1 265 DDDAITANPQHGLTFELGIE 284 (295)
T ss_dssp CHHHHHHCTTTTCEEECSSC
T ss_pred ChhHhccCCCCceEEEEcCC
Confidence 112368888763
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.65 E-value=2e-08 Score=108.56 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=86.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC--CCCchhhhhhhhhcc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT--ARRGLKFEASIKHNC 614 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~--g~~~~~~~~~~~~~~ 614 (776)
|+..||.|+.. ...+++||||++|||.........|..........++.++++||.++||-. |.-... .......
T Consensus 98 L~LnI~~P~~~-~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~--~~~~~~~ 174 (534)
T d1llfa_ 98 LTINVVRPPGT-KAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGD--DIKAEGS 174 (534)
T ss_dssp CEEEEEECTTC-CTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSH--HHHHHTC
T ss_pred CEEEEEECCCC-CCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCc--ccccccc
Confidence 88888999764 233689999999997643221122222111112234578999999999942 111000 0011123
Q ss_pred CCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--------CCCceEEEEEcCCC
Q 004067 615 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--------FPDVFQCAVSGAPV 672 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--------~~~~~~~~v~~~~~ 672 (776)
+..-+.|++.|++|+.+. ..-|+++|.|+|+|.||..+...+.. ...+|+.+|+.+|.
T Consensus 175 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 175 GNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 445689999999999986 33599999999999999988766541 11368899988864
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.2e-06 Score=90.35 Aligned_cols=182 Identities=10% Similarity=0.047 Sum_probs=109.7
Q ss_pred CeeeEEEeec--CCCceEEEEe-CCCcEEEEeCCCCccce-ecC----------------CCCCCCccCceeCCCCCEEE
Q 004067 126 GVTRYEWVKT--SSKKKIIMVP-LPDGIYFQDLSCSKPEL-KLS----------------SSSCSPVIDPHLSSDGTMIA 185 (776)
Q Consensus 126 ~~~~~~~sp~--~~dg~~l~~~-~~~~l~~~d~~~~~~~~-~l~----------------~~~~~~~~~~~~SpDg~~la 185 (776)
.+....|++. ...+..++.. .++.+.+|++....... .+. ......+..+.||||| .||
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~la 199 (393)
T d1sq9a_ 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA 199 (393)
T ss_dssp CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE
T ss_pred ceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEE
Confidence 4556677760 1123455544 78889999875332110 000 0111124568999998 454
Q ss_pred EEE-CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCC
Q 004067 186 FVR-DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSS 264 (776)
Q Consensus 186 ~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (776)
-.+ ++.|.+||+.+++......... ...+...+ +..++|||||+.|+..+.|...
T Consensus 200 sgs~Dg~i~iwd~~~~~~~~~~~~~~---~l~~h~~~--------V~~l~~spdg~~l~sgs~D~t~------------- 255 (393)
T d1sq9a_ 200 TGFNNGTVQISELSTLRPLYNFESQH---SMINNSNS--------IRSVKFSPQGSLLAIAHDSNSF------------- 255 (393)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCC------CCCCC--------EEEEEECSSTTEEEEEEEETTE-------------
T ss_pred EEeCCCcEEEEeeccccccccccccc---ccccccce--------EEEcccccccceeeeecCCCCc-------------
Confidence 433 3569999999886543222111 11122222 5588999999999887765321
Q ss_pred CCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEE-EEcccCC----CCCCCCcceEEEEEeccCCeEEEEEEeecCceE
Q 004067 265 VGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGG----TDQNYDEEYLARVNWMHGNILTAQVLNRSQTKL 339 (776)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~----~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 339 (776)
..+.+||+++++... +...... ..+.+|...+..++|||||++|+..+ .+.
T Consensus 256 --------------------~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s----~D~ 311 (393)
T d1sq9a_ 256 --------------------GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG----WDG 311 (393)
T ss_dssp --------------------EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE----TTS
T ss_pred --------------------ceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC----CCC
Confidence 457899999887543 3221111 12346778899999999999887665 566
Q ss_pred EEEEEECCCCceEEEEE
Q 004067 340 KVLKFDIKTGQRKVILV 356 (776)
Q Consensus 340 ~l~~~d~~~g~~~~l~~ 356 (776)
.|.+||+++|+......
T Consensus 312 ~v~vWd~~~g~~~~~l~ 328 (393)
T d1sq9a_ 312 KLRFWDVKTKERITTLN 328 (393)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEEC
Confidence 79999999998654443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.1e-06 Score=86.05 Aligned_cols=200 Identities=10% Similarity=0.019 Sum_probs=118.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+....+++||..++.... ..+.+++..+++....... ......++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~-- 128 (287)
T d1pgua2 83 PKVASANNDGFTAVLTND------DDLLILQSFTGDIIKSVRL--------------------------NSPGSAVSL-- 128 (287)
T ss_dssp EEEEEECSSSEEEEEETT------SEEEEEETTTCCEEEEEEC--------------------------SSCEEEEEE--
T ss_pred eeeeeeccCCceEEEeec------ccceeeeccceeeeeeccc--------------------------cceeeeeec--
Confidence 356678888887764332 3588888887776444421 223346788
Q ss_pred CCceEEEEe-CC-CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCc
Q 004067 137 SKKKIIMVP-LP-DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~-~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
+++.+++. .+ +.+.+|++.+.+....+.......+..++|||||++|+.... +.|.+|++.+++.........
T Consensus 129 -~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h--- 204 (287)
T d1pgua2 129 -SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR--- 204 (287)
T ss_dssp -CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC---
T ss_pred -cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccc---
Confidence 88888876 33 458999987665542333333334778899999999988764 579999998887543211111
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
-.++..++|+|+++.......+.. +... .+. ...|++||+.
T Consensus 205 -------------~~~v~~~~~~p~~~~~~~~~~~~~----~l~s-gs~---------------------D~~i~iw~~~ 245 (287)
T d1pgua2 205 -------------TSKINAISWKPAEKGANEEEIEED----LVAT-GSL---------------------DTNIFIYSVK 245 (287)
T ss_dssp -------------SSCEEEEEECCCC------CCSCC----EEEE-EET---------------------TSCEEEEESS
T ss_pred -------------ccccceeeecccccccccccCCCC----eeEe-ecC---------------------CCeEEEEECC
Confidence 112456789988765433221110 0000 000 0348999987
Q ss_pred CCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 294 GGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 294 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
.+. .... +..+...+..+.|+||++ ++... .+..|.+|+.
T Consensus 246 ~~~~~~~~--------~~~h~~~V~~v~~~~~~~-l~s~g----~D~~v~iW~i 286 (287)
T d1pgua2 246 RPMKIIKA--------LNAHKDGVNNLLWETPST-LVSSG----ADACIKRWNV 286 (287)
T ss_dssp CTTCCEEE--------TTSSTTCEEEEEEEETTE-EEEEE----TTSCEEEEEE
T ss_pred CCCeEEEE--------eCCCCCCeEEEEECCCCE-EEEEE----CCCeEEEEEE
Confidence 643 3222 145677899999999986 44443 2345777764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.62 E-value=2.7e-06 Score=84.58 Aligned_cols=195 Identities=12% Similarity=0.104 Sum_probs=111.6
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceee
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 364 (776)
..|+.++.++++....... .......+++++||++++...........|+.++..++....+.........
T Consensus 61 g~I~ri~p~g~~~~~~~~~--------~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 131 (319)
T d2dg1a1 61 GNIFKINPETKEIKRPFVS--------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC- 131 (319)
T ss_dssp CEEEEECTTTCCEEEEEEC--------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC-
T ss_pred CEEEEEECCCCeEEEEEeC--------CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccC-
Confidence 3578888888876554332 2234567899999985543322222345688899888887776543322111
Q ss_pred cccccccCCCCccccC-CeEEEEecc----CCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 365 LHDCFTPLDKGVTKYS-GGFIWASEK----TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~-~~~~~~s~~----~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
+.. +..++ +.+++.... .....+|+++++++..+.+...-..... +.|++||+.||+..+..
T Consensus 132 ------~nd--~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnG-ia~s~dg~~lyvad~~~---- 198 (319)
T d2dg1a1 132 ------IDD--MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG-IALSTDEKVLWVTETTA---- 198 (319)
T ss_dssp ------EEE--EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEE-EEECTTSSEEEEEEGGG----
T ss_pred ------Ccc--eeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeee-eeeccccceEEEecccC----
Confidence 110 11222 345554321 2235799999998877666543222233 45999999999987754
Q ss_pred eeEEEEEeCCCCCCcccccee----ecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 440 SHLYCAKLYPDWNHTLEAPVK----LTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~----l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
..||+++++.+|......... .....+...+.+..+|+.++..... ..|.+++. +|+.+..+
T Consensus 199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~----g~V~~~~p-~G~~l~~i 264 (319)
T d2dg1a1 199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ----GRVLVFNK-RGYPIGQI 264 (319)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT----TEEEEECT-TSCEEEEE
T ss_pred CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC----CEEEEECC-CCcEEEEE
Confidence 367778774333210000011 1111234568999999855544322 47999885 67765554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=4.7e-05 Score=75.41 Aligned_cols=272 Identities=14% Similarity=0.090 Sum_probs=155.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|+|+ .|+-.+. ...+.+|+.............. ..+.... ..
T Consensus 60 V~~v~~~~~--~l~s~s~-----D~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~-~~-- 106 (342)
T d2ovrb2 60 VWSSQMRDN--IIISGST-----DRTLKVWNAETGECIHTLYGHT-----------------------STVRCMH-LH-- 106 (342)
T ss_dssp EEEEEEETT--EEEEEET-----TSCEEEEETTTTEEEEEECCCS-----------------------SCEEEEE-EE--
T ss_pred EEEEEeCCC--cccccee-----cccccccccccccceecccccc-----------------------eeEeeee-cc--
Confidence 467888886 5554433 2468888988776544443211 1222222 22
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCcee
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
+........+..+.+++..+++....+.... .......+....++... ++.+.++++..+..........
T Consensus 107 -~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----- 177 (342)
T d2ovrb2 107 -EKRVVSGSRDATLRVWDIETGQCLHVLMGHV---AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----- 177 (342)
T ss_dssp -TTEEEEEETTSEEEEEESSSCCEEEEEECCS---SCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS-----
T ss_pred -cccccccccceeEEEeecccccceeeeeccc---ccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcc-----
Confidence 3444445578889999999887762332222 22234444555555554 4678999988776543322211
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
.....+++|++.|+....+ ..|++||+.++
T Consensus 178 --------------~~~~~~~~~~~~l~s~~~d------------------------------------g~i~~~d~~~~ 207 (342)
T d2ovrb2 178 --------------NRVYSLQFDGIHVVSGSLD------------------------------------TSIRVWDVETG 207 (342)
T ss_dssp --------------SCEEEEEECSSEEEEEETT------------------------------------SCEEEEETTTC
T ss_pred --------------cccccccCCCCEEEEEeCC------------------------------------CeEEEeecccc
Confidence 2245577889988876643 23789999988
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
+..... ..+...+..++|+ +++++..+ .+..|++||....+...........-. ... .
T Consensus 208 ~~~~~~--------~~~~~~v~~~~~~--~~~l~s~s----~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~-----~ 265 (342)
T d2ovrb2 208 NCIHTL--------TGHQSLTSGMELK--DNILVSGN----ADSTVKIWDIKTGQCLQTLQGPNKHQS---AVT-----C 265 (342)
T ss_dssp CEEEEE--------CCCCSCEEEEEEE--TTEEEEEE----TTSCEEEEETTTCCEEEEECSTTSCSS---CEE-----E
T ss_pred eeeeEe--------cccccceeEEecC--CCEEEEEc----CCCEEEEEecccccccccccccceeee---cee-----e
Confidence 765442 3344556555554 45666554 345699999988776554432211000 000 0
Q ss_pred ccccCCeEEEEeccCCceEEEEEeCCCcee-ecccc-----CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 376 VTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITE-----GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~-----~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+++++ .++++...+| .|.+||+.+++. +.+.. +...+..+. |++++. +++.+..++..+.+|+..++
T Consensus 266 ~~~~~-~~~~s~s~Dg--~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~-~s~~~~-~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 266 LQFNK-NFVITSSDDG--TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-ASNTKL-VCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp EEECS-SEEEEEETTS--EEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-ECSSEE-EEEEECSSSSSCCEEEEEEC
T ss_pred cccCC-CeeEEEcCCC--EEEEEECCCCCEEEEEecccCCCCCCCEEEEE-ECCCCC-EEEEEeCCCCCeeEEEEEeC
Confidence 12223 3555565677 899999886653 44432 233455554 999876 45555555544566777666
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.59 E-value=3.9e-06 Score=83.12 Aligned_cols=261 Identities=10% Similarity=0.018 Sum_probs=140.8
Q ss_pred CeeeEEEeecCCCceEEEEeC--------CCcEEEEeCCCCccceecCCCC----CCCccCceeCCCCCEEEEEEC-CcE
Q 004067 126 GVTRYEWVKTSSKKKIIMVPL--------PDGIYFQDLSCSKPELKLSSSS----CSPVIDPHLSSDGTMIAFVRD-CEL 192 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~--------~~~l~~~d~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~la~~~~-~~l 192 (776)
+...+.|.| ||+..+... +++|+++|.++++.. .+.... ......+.|+|||..|+.... +.|
T Consensus 19 g~EGpa~d~---dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~-~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i 94 (314)
T d1pjxa_ 19 GAEGPVFDK---NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp TCEEEEECT---TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred CCeEeEEeC---CCCEEEEECccccccccCCEEEEEECCCCcEE-EEECCccccCCCcceeEEEeCCCCEEEEEECCCeE
Confidence 455688999 998555432 457999999998766 332211 112345889999987665543 458
Q ss_pred EEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 193 HVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 193 ~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
.+++.+++....+.....+. ... ....+++.|||+ |++.... ...... .
T Consensus 95 ~~~~~~g~~~~~~~~~~~g~-~~~------------~pndl~~d~~G~-lyvtd~~-~~~~~~----------------~ 143 (314)
T d1pjxa_ 95 LVVQTDGTFEEIAKKDSEGR-RMQ------------GCNDCAFDYEGN-LWITAPA-GEVAPA----------------D 143 (314)
T ss_dssp EEEETTSCEEECCSBCTTSC-BCB------------CCCEEEECTTSC-EEEEECB-CBCTTS----------------C
T ss_pred EEEeCCCcEEEEEecccccc-ccC------------CCcEEEECCCCC-EEEecCc-cCcccc----------------c
Confidence 88998877655443322210 011 124678999996 6554311 100000 0
Q ss_pred ecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe----EEEEEEeecCceEEEEEEECCC
Q 004067 273 HAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI----LTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~----~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
. ..........|+.++.++...... . ....-..++|+||++ .|++. .. ....|+++|++.
T Consensus 144 ~---~~~~~~~~G~v~~~~~dg~~~~~~-~---------~~~~pNGi~~~~d~d~~~~~lyv~-d~--~~~~i~~~d~~~ 207 (314)
T d1pjxa_ 144 Y---TRSMQEKFGSIYCFTTDGQMIQVD-T---------AFQFPNGIAVRHMNDGRPYQLIVA-ET--PTKKLWSYDIKG 207 (314)
T ss_dssp C---CBTTSSSCEEEEEECTTSCEEEEE-E---------EESSEEEEEEEECTTSCEEEEEEE-ET--TTTEEEEEEEEE
T ss_pred c---cceeccCCceEEEEeecCceeEee-C---------CcceeeeeEECCCCCcceeEEEEE-ee--cccceEEeeccC
Confidence 0 000011235688888766443332 1 111234578998763 34433 22 234688887643
Q ss_pred -CceE--EEEEeccCceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCceee-ccccCCeEEEEEEeecC
Q 004067 349 -GQRK--VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNE 423 (776)
Q Consensus 349 -g~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~~~-~lt~~~~~~~~~~~~s~ 423 (776)
|... .+...... .... .+.++..|.++-+|+++ ..+ .|++++++++... .+........++ .|.+
T Consensus 208 ~g~~~~~~~~~~~~~-----~~~~--~pdGiavD~~GnlyVa~~~~g--~I~~~dp~~g~~~~~i~~p~~~~t~~-afg~ 277 (314)
T d1pjxa_ 208 PAKIENKKVWGHIPG-----THEG--GADGMDFDEDNNLLVANWGSS--HIEVFGPDGGQPKMRIRCPFEKPSNL-HFKP 277 (314)
T ss_dssp TTEEEEEEEEEECCC-----CSSC--EEEEEEEBTTCCEEEEEETTT--EEEEECTTCBSCSEEEECSSSCEEEE-EECT
T ss_pred ccccceeeEEEEccc-----cccc--cceeeEEecCCcEEEEEcCCC--EEEEEeCCCCEEEEEEECCCCCEEEE-EEeC
Confidence 3321 11111100 0000 11223444444445554 344 8999999988643 344333334444 4899
Q ss_pred CCcEEEEEEccCCCceeeEEEEEeCCCC
Q 004067 424 ASGQVYFTGTLDGPLESHLYCAKLYPDW 451 (776)
Q Consensus 424 dg~~i~~~~~~~~~~~~~l~~~~~~~~g 451 (776)
|++.||++....+ .||++++...|
T Consensus 278 d~~~lyVt~~~~g----~i~~~~~~~~G 301 (314)
T d1pjxa_ 278 QTKTIFVTEHENN----AVWKFEWQRNG 301 (314)
T ss_dssp TSSEEEEEETTTT----EEEEEECSSCB
T ss_pred CCCEEEEEECCCC----cEEEEECCCCC
Confidence 9999999877553 79999985444
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.58 E-value=3.1e-08 Score=105.69 Aligned_cols=129 Identities=20% Similarity=0.251 Sum_probs=87.9
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh--hhh-hhc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE--ASI-KHN 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~--~~~-~~~ 613 (776)
|+..||.|+... +++||||++|||.....-...+ .+. ....+.+.+++||.++||-. -.| |. ... ...
T Consensus 82 L~lni~~P~~~~---~~lPV~v~ihGG~~~~g~~~~~--~~~-~~~~~~~~~vVvV~~nYRlg-~~G--Fl~~~~~~~~~ 152 (483)
T d1qe3a_ 82 LYVNVFAPDTPS---QNLPVMVWIHGGAFYLGAGSEP--LYD-GSKLAAQGEVIVVTLNYRLG-PFG--FLHLSSFDEAY 152 (483)
T ss_dssp CEEEEEEECSSC---CSEEEEEEECCSTTTSCCTTSG--GGC-CHHHHHHHTCEEEEECCCCH-HHH--SCCCTTTCTTS
T ss_pred CEEEEEECCCCC---CCCceEEEEeecccccCCcccc--ccc-cccccccCceEEEeeccccc-chh--hcccccccccc
Confidence 788888897642 6899999999975432211111 111 13445567899999999942 000 11 000 111
Q ss_pred cCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCCC
Q 004067 614 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTS 674 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~~ 674 (776)
-+..-+.|++.|++|+.+. ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.+|...
T Consensus 153 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~~ 218 (483)
T d1qe3a_ 153 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASR 218 (483)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCcc
Confidence 2344589999999999886 335999999999999999998888742 358999999887653
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.56 E-value=5.1e-08 Score=105.40 Aligned_cols=131 Identities=16% Similarity=0.238 Sum_probs=86.1
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhH-HHHhCCcEEEEECCCCC--CCC-chhhhhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRSKGILVWKLDNRGT--ARR-GLKFEASIKH 612 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~-~l~~~G~~v~~~d~rg~--g~~-~~~~~~~~~~ 612 (776)
|+..||.|+.. ...+++||||++|||.-...-...+... ..... ..+..+++||.++||-. |.- ..+.. ..
T Consensus 106 L~LnI~~P~~~-~~~~~lPV~V~ihGG~f~~G~~~~~~~~-~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~---~~ 180 (544)
T d1thga_ 106 LYLNVFRPAGT-KPDAKLPVMVWIYGGAFVYGSSAAYPGN-SYVKESINMGQPVVFVSINYRTGPFGFLGGDAIT---AE 180 (544)
T ss_dssp CEEEEEEETTC-CTTCCEEEEEEECCCTTCCSGGGGCCSH-HHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHH---HH
T ss_pred CEEEEEECCCC-CCCCCCCEEEEeccCCCccCCCccCCcc-hhhhhhhhccCCeEEEecccccccccccCCchhh---cc
Confidence 78888889764 2336899999999976432211112111 11122 33578999999999931 110 10111 11
Q ss_pred ccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--------CCceEEEEEcCCC
Q 004067 613 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPV 672 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--------~~~~~~~v~~~~~ 672 (776)
.-+..-+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.+|.
T Consensus 181 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 181 GNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp TCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred ccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 12344589999999999986 335899999999999999888777531 2479999988864
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.49 E-value=1.7e-06 Score=88.19 Aligned_cols=159 Identities=9% Similarity=-0.036 Sum_probs=86.4
Q ss_pred CEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCC-CCCCCCCCHHHHHHHHHHHHhcCCe---eeEE---EeecCCCc
Q 004067 67 NLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDG-GLDENNISPEEKLRRERLRERGLGV---TRYE---WVKTSSKK 139 (776)
Q Consensus 67 ~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~---~sp~~~dg 139 (776)
++.+|.+... ..+|.++++.+++.-+....-.. ......++.+.+-..........+. ...+ .+| ||
T Consensus 10 e~y~f~Sgg~---sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp---DG 83 (441)
T d1qnia2 10 EYYGFWSGGH---QGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY---DG 83 (441)
T ss_dssp SEEEEEECBT---TCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE---EE
T ss_pred CEEEEEeCCC---CCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC---CC
Confidence 3677887633 35799999988875332211000 1111233333322210000000111 1222 357 99
Q ss_pred eEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEE--ECCc------------------EEEEec
Q 004067 140 KIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFV--RDCE------------------LHVLNL 197 (776)
Q Consensus 140 ~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~--~~~~------------------l~~~~l 197 (776)
++|++. .++.|-++|+++.+....++-.........+|||||+++... ..+. +-.+|.
T Consensus 84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~ 163 (441)
T d1qnia2 84 KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA 163 (441)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence 999887 567899999999987733322222236778999999954333 2222 233555
Q ss_pred CCCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCC
Q 004067 198 LINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSS 250 (776)
Q Consensus 198 ~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 250 (776)
++.+.. ++...+. ...+.++|||++++..+.+..
T Consensus 164 ~t~~v~~qI~v~~~-------------------p~~v~~spdGk~a~vt~~nse 198 (441)
T d1qnia2 164 ETMDVAWQVIVDGN-------------------LDNTDADYTGKYATSTCYNSE 198 (441)
T ss_dssp TTCSEEEEEEESSC-------------------CCCEEECSSSSEEEEEESCTT
T ss_pred ccceeeEEEecCCC-------------------ccceEECCCCCEEEEEecCCC
Confidence 554432 3322221 346789999998887775543
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.48 E-value=1.9e-07 Score=89.75 Aligned_cols=195 Identities=11% Similarity=-0.042 Sum_probs=106.0
Q ss_pred CceEEEEEcCC--CCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHH-HHHH
Q 004067 553 PYKTLISVYGG--PCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWL 629 (776)
Q Consensus 553 ~~p~vl~~HG~--~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~-i~~l 629 (776)
..|.|+++||. +++.. .|..++..|.. .+.|+.++.+|++...... .+++++.+. ++.+
T Consensus 41 ~~~~l~c~~~~~~gg~~~-------~y~~La~~L~~-~~~V~al~~pG~~~~e~~~----------~s~~~~a~~~~~~i 102 (255)
T d1mo2a_ 41 GEVTVICCAGTAAISGPH-------EFTRLAGALRG-IAPVRAVPQPGYEEGEPLP----------SSMAAVAAVQADAV 102 (255)
T ss_dssp CSSEEEEECCCSSSCSGG-------GGHHHHHHHTT-TCCEEEECCTTSSTTCCEE----------SSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCCCHH-------HHHHHHHhcCC-CceEEEEeCCCcCCCCCCC----------CCHHHHHHHHHHHH
Confidence 34788999973 23322 34445666654 5899999999987553211 124444443 2344
Q ss_pred HHcCCCCCCcEEEEeechHHHHHHHHHhhC---CCceEEEEEcCCCCCccc--ccc---cccccccCCC--CCCccc---
Q 004067 630 IKQGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWDG--YDT---FYTEKYMGLP--SEDPVG--- 696 (776)
Q Consensus 630 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---~~~~~~~v~~~~~~~~~~--~~~---~~~~~~~~~~--~~~~~~--- 696 (776)
++.. ...++.|+||||||.+|+.+|.+. ...+..++++.+...... ... .......... ......
T Consensus 103 ~~~~--~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a 180 (255)
T d1mo2a_ 103 IRTQ--GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTA 180 (255)
T ss_dssp HHTT--SSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEECSCSSHHHHHHHHHHHHHTTCC----CCCCHHHHHH
T ss_pred HHhC--CCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECCCCCCCccchhhHHHHHHHHhhccccccCCHHHHHH
Confidence 4432 345799999999999999998753 444666776655432110 000 0000000000 000000
Q ss_pred hhc-CCh--hhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 697 YEY-SSV--MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 697 ~~~-~~~--~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+.. ... ......+.+|++++.+.+|........ .. ......++++.+++ +|.....+......+.|.+||.
T Consensus 181 ~~~~~~~~~~~~~~~~~~p~l~v~a~~~~~~~~~~~--w~---~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 181 LGAYDRLTGQWRPRETGLPTLLVSAGEPMGPWPDDS--WK---PTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 254 (255)
T ss_dssp HHHHHHHHHHCCCCCCCCCEEEEECCSSSSCCTTCC--CC---CCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccccceEEEeecCCCCCcchhhH--HH---HhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHhC
Confidence 000 000 011245678999999988755443221 11 11234678889987 7863233567778888888874
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.48 E-value=3.8e-05 Score=75.67 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=63.4
Q ss_pred CCceeEcCCCCEEEEEeCCCC---cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSPDDNLITYLLSPDH---SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~---~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+..|+|.|||+ |++...... .....|+++|+++++...+....... ....-....++
T Consensus 20 ~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~-------------------~~g~P~Gl~~~ 79 (314)
T d1pjxa_ 20 AEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG-------------------YGGIPAGCQCD 79 (314)
T ss_dssp CEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT-------------------EECCEEEEEEC
T ss_pred CeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCcccc-------------------CCCcceeEEEe
Confidence 47899999997 666654321 11347999999998876554311100 00113457899
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCccceecCCC-CCCC---ccCceeCCCCC
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSS-SCSP---VIDPHLSSDGT 182 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~-~~~~---~~~~~~SpDg~ 182 (776)
+ ||..|++. ....|.+++.+++... .+... .+.. .....+.|||.
T Consensus 80 ~---dg~~l~vad~~~~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~ 129 (314)
T d1pjxa_ 80 R---DANQLFVADMRLGLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGN 129 (314)
T ss_dssp S---SSSEEEEEETTTEEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSC
T ss_pred C---CCCEEEEEECCCeEEEEeCCCcEEE-EEeccccccccCCCcEEEECCCCC
Confidence 9 99888776 3456999999988765 33222 1111 23467888885
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.3e-07 Score=102.13 Aligned_cols=128 Identities=20% Similarity=0.307 Sum_probs=88.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh-hhhhccC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA-SIKHNCG 615 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~-~~~~~~~ 615 (776)
|+..||.|+.. ...+++||+|++|||.....-...+ . -...++..+.+||.++||-. -.| |.. .....-+
T Consensus 97 L~LnI~~P~~~-~~~~~lPV~v~ihGG~~~~gs~~~~----~-~~~~~~~~~vIvVt~nYRLg-~~G--Fl~~~~~~~~g 167 (532)
T d2h7ca1 97 LYLNIYTPADL-TKKNRLPVMVWIHGGGLMVGAASTY----D-GLALAAHENVVVVTIQYRLG-IWG--FFSTGDEHSRG 167 (532)
T ss_dssp CEEEEEECSCT-TSCCCEEEEEEECCSTTTSCCSTTS----C-CHHHHHHHTCEEEEECCCCH-HHH--HCCCSSTTCCC
T ss_pred CEEEEEECCCC-CCCCCcEEEEEEeCCcccccccccC----C-chhhhhcCceEEEEEeeccC-CCc--ccccccccccc
Confidence 78888899764 2336799999999976543211111 1 13456788999999999942 000 000 0011123
Q ss_pred CccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCC
Q 004067 616 RIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVT 673 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~ 673 (776)
..-+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 168 N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 168 NWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 34589999999999885 33599999999999999999888764 245899999888754
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=7.4e-08 Score=104.36 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=85.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCC----CCCCchhhhhhhhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG----TARRGLKFEASIKH 612 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg----~g~~~~~~~~~~~~ 612 (776)
|+..||.|... ..+++||||++|||.....-.... .+.. ....+..+++||.++||- +-..+. ...
T Consensus 97 L~LnI~~P~~~--~~~~lPV~v~ihGG~~~~gs~~~~--~~~~-~~~~~~~~vvvVt~nYRlg~~Gfl~~~~-----~~~ 166 (542)
T d2ha2a1 97 LYLNVWTPYPR--PASPTPVLIWIYGGGFYSGAASLD--VYDG-RFLAQVEGAVLVSMNYRVGTFGFLALPG-----SRE 166 (542)
T ss_dssp CEEEEEEESSC--CSSCEEEEEEECCSTTTCCCTTSG--GGCT-HHHHHHHCCEEEEECCCCHHHHHCCCTT-----CSS
T ss_pred CEEEEEecCCC--CCCCCcEEEEEEECccccccCccc--ccCc-hhhhhhccceeEeeeeeccceeeecccc-----ccc
Confidence 77888888652 336899999999975422111110 1111 223446799999999993 111110 111
Q ss_pred ccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCC
Q 004067 613 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 673 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~ 673 (776)
..+..-+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|..+|+.++..
T Consensus 167 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 167 APGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp CCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 23344589999999999985 335899999999999999999887643 35788899887743
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.45 E-value=1.7e-07 Score=100.62 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=84.7
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHH-HhCCcEEEEECCCCC--CCCchhhhhhhhhc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGT--ARRGLKFEASIKHN 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l-~~~G~~v~~~d~rg~--g~~~~~~~~~~~~~ 613 (776)
|+..||.|+.. ...+++||+|++|||.....-...+ ......+ ...+++||.++||-. |.-.. .......
T Consensus 81 L~LnI~~P~~~-~~~~~~PV~v~ihGG~~~~G~~~~~----~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~--~~~~~~~ 153 (517)
T d1ukca_ 81 LFINVFKPSTA-TSQSKLPVWLFIQGGGYAENSNANY----NGTQVIQASDDVIVFVTFNYRVGALGFLAS--EKVRQNG 153 (517)
T ss_dssp CEEEEEEETTC-CTTCCEEEEEEECCSTTTSCCSCSC----CCHHHHHHTTSCCEEEEECCCCHHHHHCCC--HHHHHSS
T ss_pred CEEEEEeCCCC-CCCCCceEEEEEcCCccccCCCccc----cchhhhhhhccccceEEEEecccceeecCc--ccccccc
Confidence 78888888764 2336789999999976433211122 1112223 356789999999942 10000 0000111
Q ss_pred cCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh----CCCceEEEEEcCCCC
Q 004067 614 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR----FPDVFQCAVSGAPVT 673 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~----~~~~~~~~v~~~~~~ 673 (776)
.+..-+.|++.|++|+.++ ..-|+++|.|+|+|.||..+...+.. ...+|+.+|+.++..
T Consensus 154 ~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 154 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 2244589999999999986 33589999999999999988766543 224899999988754
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.44 E-value=2.5e-05 Score=81.05 Aligned_cols=295 Identities=13% Similarity=0.097 Sum_probs=168.1
Q ss_pred CCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 64 PDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 64 pDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
.+|.+..|.....+.....++.....+++.+.+.+... ++.+. ...+..+.+|| ||++++
T Consensus 81 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~-------la~~~----------~~~~~~~~~Sp---d~~~la 140 (430)
T d1qfma1 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNI-------LSDDG----------TVALRGYAFSE---DGEYFA 140 (430)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSSSSCCEEEECGGG-------GCSSS----------CEEEEEEEECT---TSSEEE
T ss_pred EeCCEEEEEEecCCCccceEEeccccCCCeeeecchhh-------hcccc----------cceecceEecC---CCCEEE
Confidence 46777776665444444567777777778788776322 11111 11233566777 999999
Q ss_pred EeCC------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-----------------cEEEEecCCC
Q 004067 144 VPLP------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-----------------ELHVLNLLIN 200 (776)
Q Consensus 144 ~~~~------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-----------------~l~~~~l~~g 200 (776)
|+.+ ..|++.|+++|+.. ..+-. ......+.|++|++.|.|+... .+|+..+-++
T Consensus 141 ~s~d~~G~e~~~l~v~Dl~tg~~~-~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~ 218 (430)
T d1qfma1 141 YGLSASGSDWVTIKFMKVDGAKEL-PDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (430)
T ss_dssp EEEEETTCSCEEEEEEETTTTEEE-EEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred EEeccccCchheeEEeccCcceec-ccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCC
Confidence 9822 35889999999876 32211 1123568999999999998732 4888888776
Q ss_pred cee--EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 201 EQR--QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 201 ~~~--~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
... .+...... +.| ......|+||+.|+........
T Consensus 219 ~~~d~~v~~e~d~-------~~~--------~~~~~~s~d~~~l~i~~~~~~~--------------------------- 256 (430)
T d1qfma1 219 QSEDILCAEFPDE-------PKW--------MGGAELSDDGRYVLLSIREGCD--------------------------- 256 (430)
T ss_dssp GGGCEEEECCTTC-------TTC--------EEEEEECTTSCEEEEEEECSSS---------------------------
T ss_pred ccccccccccccC-------Cce--------EEeeeccCCcceeeEEeeccCC---------------------------
Confidence 443 33222211 001 1245578999988765532221
Q ss_pred CCCCCeEEEEEEEcCCCce--------EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 279 GASNVKVRLGVVSAAGGPV--------SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
....+++.|+..... ..+. .........+ ..+|..+++.++.+..+..|+.++++...
T Consensus 257 ----~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~ 322 (430)
T d1qfma1 257 ----PVNRLWYCDLQQESNGITGILKWVKLI--------DNFEGEYDYV--TNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (430)
T ss_dssp ----SCCEEEEEEGGGSSSSSCSSCCCEEEE--------CSSSSCEEEE--EEETTEEEEEECTTCTTCEEEEEETTBCC
T ss_pred ----ccEEEEEeeCCCcccccccccceeEee--------cccccceEEE--ecCCceeecccCcccccceeEEecCCCCc
Confidence 113355555443211 1110 1111111111 22455667777777778899999987654
Q ss_pred ---eEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC-eEEEEEEeecCCCc
Q 004067 351 ---RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASG 426 (776)
Q Consensus 351 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~-~~~~~~~~~s~dg~ 426 (776)
.+.+..+........ .+ ....+.+++....++...|+++++++++...+.... ..+... ..+++..
T Consensus 323 ~~~w~~vi~~~~~~~~~~--~~-------~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~-~~~~~~~ 392 (430)
T d1qfma1 323 ESKWKVLVPEHEKDVLEW--VA-------CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGY-SGQKKDT 392 (430)
T ss_dssp GGGCEEEECCCSSCEEEE--EE-------EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEE-ECCTTCS
T ss_pred cccceEEecccCcceeee--EE-------EEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeec-cCCCCCC
Confidence 355544322211100 00 112344555556788999999999998877665443 333332 3456667
Q ss_pred EEEEEEc-cCCCceeeEEEEEeC
Q 004067 427 QVYFTGT-LDGPLESHLYCAKLY 448 (776)
Q Consensus 427 ~i~~~~~-~~~~~~~~l~~~~~~ 448 (776)
.++|..+ .-.| ..+|..++.
T Consensus 393 ~~~~~~ss~~tP--~~~y~~Dl~ 413 (430)
T d1qfma1 393 EIFYQFTSFLSP--GIIYHCDLT 413 (430)
T ss_dssp EEEEEEECSSCC--CEEEEEETT
T ss_pred EEEEEEcCCCCC--CeEEEEECC
Confidence 7777643 4556 679999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3.8e-05 Score=74.13 Aligned_cols=258 Identities=15% Similarity=0.141 Sum_probs=140.4
Q ss_pred eEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeec-CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 61 GFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFS-PPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 61 ~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
.+++||++||-.+. ...|.+||+.+++..+... |. ..+.. +++ |+
T Consensus 20 c~~~d~~~l~sgs~-----Dg~i~vWd~~~~~~~~~l~~H~------------------------~~V~~--v~~---~~ 65 (293)
T d1p22a2 20 CLQYDDQKIVSGLR-----DNTIKIWDKNTLECKRILTGHT------------------------GSVLC--LQY---DE 65 (293)
T ss_dssp EEECCSSEEEEEES-----SSCEEEEESSSCCEEEEECCCS------------------------SCEEE--EEC---CS
T ss_pred EEEEcCCEEEEEeC-----CCeEEEEECCCCcEEEEEecCC------------------------CCEee--eec---cc
Confidence 47999999985544 2469999999988755443 22 34554 455 77
Q ss_pred eEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEee--CCCCCcee
Q 004067 140 KIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTH--GANGNTVT 215 (776)
Q Consensus 140 ~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~--~~~~~~~~ 215 (776)
+.|+.. .++.|.+|++..+... ....... .....+.+....++.... +.+.+++..+........ ....
T Consensus 66 ~~l~s~s~D~~i~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 138 (293)
T d1p22a2 66 RVIITGSSDSTVRVWDVNTGEML-NTLIHHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR---- 138 (293)
T ss_dssp SEEEEEETTSCEEEEESSSCCEE-EEECCCC--SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS----
T ss_pred ceeeccccccccccccccccccc-ccccccc--cccccccccccceeecccccceeEeeccccccccccccccccc----
Confidence 777765 7889999999988776 3222221 233445555566655554 567888877654322211 1110
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
..-....+....++..+.+ ..+.+||..++
T Consensus 139 --------------~~v~~~~~~~~~~~~~s~d------------------------------------~~i~~~d~~~~ 168 (293)
T d1p22a2 139 --------------AAVNVVDFDDKYIVSASGD------------------------------------RTIKVWNTSTC 168 (293)
T ss_dssp --------------SCEEEEEEETTEEEEEETT------------------------------------SEEEEEETTTC
T ss_pred --------------cccccceecccccccccCC------------------------------------CceeeecCCCC
Confidence 0011122233334333321 34788999888
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
+....- ......+..+.++ +..++... .+..|.+||+.++........... ... .+
T Consensus 169 ~~~~~~--------~~~~~~v~~~~~~--~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~-~v~---~~------ 224 (293)
T d1p22a2 169 EFVRTL--------NGHKRGIACLQYR--DRLVVSGS----SDNTIRLWDIECGACLRVLEGHEE-LVR---CI------ 224 (293)
T ss_dssp CEEEEE--------ECCSSCEEEEEEE--TTEEEEEE----TTSCEEEEETTTCCEEEEECCCSS-CEE---EE------
T ss_pred cEEEEE--------cccccccccccCC--CCeEEEec----CCCEEEEEecccceeeeeecccce-eee---ec------
Confidence 754321 2233344455554 45565554 344589999998776554432221 100 01
Q ss_pred ccccCCeEEEEeccCCceEEEEEeCCCc----------eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 376 VTKYSGGFIWASEKTGFRHLYLHDINGT----------CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~~~l~~~~~~g~----------~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
+. +...+++...+| .|++|++.++ ..+.+..+...+..+. | |+++ +++++.++. +.||
T Consensus 225 -~~-~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~-~--d~~~-l~s~s~Dg~--i~iW 292 (293)
T d1p22a2 225 -RF-DNKRIVSGAYDG--KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-F--DEFQ-IVSSSHDDT--ILIW 292 (293)
T ss_dssp -EC-CSSEEEEEETTS--CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE-E--CSSC-EEECCSSSE--EEEE
T ss_pred -cc-cceEEEEEcCCC--EEEEEECCCCccccccCCceeeEEecCCCCCEEEEE-E--cCCE-EEEEecCCE--EEEe
Confidence 11 233555556677 7888885432 1233444444444432 4 5664 444544443 6666
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.42 E-value=1.1e-07 Score=102.83 Aligned_cols=128 Identities=17% Similarity=0.247 Sum_probs=85.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh--hhhhcc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA--SIKHNC 614 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~--~~~~~~ 614 (776)
|+..||.|.... +++||+|++|||.....-... ..+. ....+++.+++||.++||-. -.| |.. .....-
T Consensus 92 L~LnI~~P~~~~---~~lPV~v~ihGG~~~~g~~~~--~~~~-~~~~~~~~~vvvVt~nYRlg-~~G--Fl~~~~~~~~~ 162 (532)
T d1ea5a_ 92 LYLNIWVPSPRP---KSTTVMVWIYGGGFYSGSSTL--DVYN-GKYLAYTEEVVLVSLSYRVG-AFG--FLALHGSQEAP 162 (532)
T ss_dssp CEEEEEECSSCC---SSEEEEEEECCSTTTCCCTTC--GGGC-THHHHHHHTCEEEECCCCCH-HHH--HCCCTTCSSSC
T ss_pred CEEEEEeCCCCC---CCCcEEEEEEcCCcccccCCc--cccC-cchhhcccCccEEEEeeccc-ccc--ccccccccCCC
Confidence 777888887532 589999999997532210000 0111 13346678999999999942 000 000 011122
Q ss_pred CCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCC
Q 004067 615 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 673 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~ 673 (776)
+..-+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|..+|+.++..
T Consensus 163 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 163 GNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred CcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 334589999999999986 335899999999999999988887642 34788888877654
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.4e-07 Score=101.68 Aligned_cols=128 Identities=22% Similarity=0.255 Sum_probs=84.1
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh--hhhhcc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA--SIKHNC 614 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~--~~~~~~ 614 (776)
|...||.|... .+++||||++|||.....-.... .+. .....++.+++||.++||-. -.| |.. ......
T Consensus 90 L~lnI~~P~~~---~~~~PV~v~ihGG~~~~gs~~~~--~~~-~~~~~~~~~vVvVt~nYRlg-~~G--fl~~~~~~~~~ 160 (526)
T d1p0ia_ 90 LYLNVWIPAPK---PKNATVLIWIYGGGFQTGTSSLH--VYD-GKFLARVERVIVVSMNYRVG-ALG--FLALPGNPEAP 160 (526)
T ss_dssp CEEEEEEESSC---CSSEEEEEEECCSTTTSCCTTCG--GGC-THHHHHHHCCEEEEECCCCH-HHH--HCCCTTCTTSC
T ss_pred CEEEEEeCCCC---CCCCceEEEEECCCcccccCccc--ccC-ccccccccceeEEecccccc-ccc--ccCCCCccccc
Confidence 78888888753 26889999999976432211111 111 12234567999999999932 000 000 011122
Q ss_pred CCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCC
Q 004067 615 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVT 673 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~ 673 (776)
+..-+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 161 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 161 GNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred ccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 344589999999999885 33489999999999999999777653 234688888776543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=6.9e-05 Score=71.64 Aligned_cols=236 Identities=13% Similarity=0.033 Sum_probs=137.9
Q ss_pred EEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCC
Q 004067 183 MIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGK 262 (776)
Q Consensus 183 ~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 262 (776)
.|+|...++|+.+++++++...+..+... ..++.|.+..++|++.....
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~~~~~~------------------~~~id~d~~~~~lYw~D~~~------------- 51 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRN------------------VVALDTEVASNRIYWSDLSQ------------- 51 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSCSS------------------EEEEEEETTTTEEEEEETTT-------------
T ss_pred EEEEECCCeEEEEECCCCcceeeeCCCCc------------------eEEEEEEeCCCEEEEEECCC-------------
Confidence 57788888999999999888777544321 33677888888887653221
Q ss_pred CCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc----eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCce
Q 004067 263 SSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP----VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTK 338 (776)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 338 (776)
..|+..++++.. ...+- .........+++.+-++.|+++. .. .
T Consensus 52 ----------------------~~I~~~~l~~~~~~~~~~~~~--------~~~~~~p~glAvD~~~~~lY~~d-~~--~ 98 (266)
T d1ijqa1 52 ----------------------RMICSTQLDRAHGVSSYDTVI--------SRDIQAPDGLAVDWIHSNIYWTD-SV--L 98 (266)
T ss_dssp ----------------------TEEEEEEC--------CEEEE--------CSSCSCCCEEEEETTTTEEEEEE-TT--T
T ss_pred ----------------------CEEEEEEecCCCCCcceEEEE--------eCCCCCcceEEEeeccceEEEEe-cC--C
Confidence 123444443311 11111 11222344567766666676653 22 3
Q ss_pred EEEEEEECCCCceEEEEEeccCceeecccccccCCCCcccc-CCeEEEEeccCCceEEEEEeCCCceeeccccCCe-EEE
Q 004067 339 LKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVE 416 (776)
Q Consensus 339 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~-~~~ 416 (776)
..|.++++++...+.+....... | .++.-+ .++++|.++......|++.+++|...+.+..... ...
T Consensus 99 ~~I~v~~~~g~~~~~~~~~~~~~---------P--~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~ 167 (266)
T d1ijqa1 99 GTVSVADTKGVKRKTLFRENGSK---------P--RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167 (266)
T ss_dssp TEEEEEETTSSSEEEEEECTTCC---------E--EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred CEEEeEecCCceEEEEEcCCCCC---------c--ceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceee
Confidence 46899999887766665543210 1 011111 2345566655445689999999998877765432 233
Q ss_pred EEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceee-cCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEE
Q 004067 417 QIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-TNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILL 494 (776)
Q Consensus 417 ~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l-~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~ 494 (776)
+ +.+++.++.||+..... ..|+++++ +|. ..+.+ ..... ..-..++.++.+|.++.... ..|++
T Consensus 168 g-l~iD~~~~~lYw~d~~~----~~I~~~~~--dG~----~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~---~~I~~ 233 (266)
T d1ijqa1 168 G-ITLDLLSGRLYWVDSKL----HSISSIDV--NGG----NRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN---EAIFS 233 (266)
T ss_dssp E-EEEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEEECTTTTSSEEEEEEETTEEEEEETTT---TEEEE
T ss_pred E-EEeeccccEEEEecCCc----CEEEEEEC--CCC----CEEEEEeCCCcccccEEEEEECCEEEEEECCC---CeEEE
Confidence 3 34888899999986554 37899998 665 22232 22221 12234445566777765433 47999
Q ss_pred EEcCCCceeEeec
Q 004067 495 CSLQDGSLVLPLY 507 (776)
Q Consensus 495 ~~~~~~~~~~~l~ 507 (776)
++..+|+..+.+.
T Consensus 234 ~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 234 ANRLTGSDVNLLA 246 (266)
T ss_dssp EETTTCCCCEEEE
T ss_pred EECCCCcceEEEE
Confidence 9877776555443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=8e-07 Score=91.73 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=96.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.||||| .|| .... ...|.+||+.+++......... . ...+...+....|+|
T Consensus 187 ~~~v~~s~dg-~la-sgs~----Dg~i~iwd~~~~~~~~~~~~~~------~-----------l~~h~~~V~~l~~sp-- 241 (393)
T d1sq9a_ 187 ATSVDISERG-LIA-TGFN----NGTVQISELSTLRPLYNFESQH------S-----------MINNSNSIRSVKFSP-- 241 (393)
T ss_dssp CCEEEECTTS-EEE-EECT----TSEEEEEETTTTEEEEEEECCC--------------------CCCCCEEEEEECS--
T ss_pred EEEEEECCCC-EEE-EEeC----CCcEEEEeeccccccccccccc------c-----------cccccceEEEccccc--
Confidence 4678999999 555 2222 3579999999887643332111 0 011234688999999
Q ss_pred CCceEEEEeCC-C---cEEEEeCCCCccceecCC------------CCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC
Q 004067 137 SKKKIIMVPLP-D---GIYFQDLSCSKPELKLSS------------SSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI 199 (776)
Q Consensus 137 ~dg~~l~~~~~-~---~l~~~d~~~~~~~~~l~~------------~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~ 199 (776)
||+.|+...+ + .|.+||+++++....+.. +....+..++|||||+.|+-.+. +.|.+||+++
T Consensus 242 -dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 242 -QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp -STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred -ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 9999998733 2 388999998876533331 11123677899999999988875 5799999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEE
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIA 243 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~ 243 (776)
|+..+....... .+.. ....+.|+|||+.++
T Consensus 321 g~~~~~l~gH~~-~v~~------------~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 321 KERITTLNMHCD-DIEI------------EEDILAVDEHGDSLA 351 (393)
T ss_dssp TEEEEEEECCGG-GCSS------------GGGCCCBCTTSCBCS
T ss_pred CCEEEEECCcCC-cccC------------CccEEEECCCCCEEE
Confidence 976554332211 1110 022466999998764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.38 E-value=5.3e-05 Score=73.85 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=123.1
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
.+|.|.++.+.|+|+.-.. ..|+++|+++++.+...- +..+....+.+
T Consensus 21 Egp~wd~~~~~l~wvDi~~----~~I~r~d~~~g~~~~~~~-------------------------~~~~~~i~~~~--- 68 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILE----RELHELHLASGRKTVHAL-------------------------PFMGSALAKIS--- 68 (295)
T ss_dssp EEEEEETTTTEEEEEEGGG----TEEEEEETTTTEEEEEEC-------------------------SSCEEEEEEEE---
T ss_pred eCCeEECCCCEEEEEECCC----CEEEEEECCCCeEEEEEC-------------------------CCCcEEEEEec---
Confidence 5789999999999986533 479999999998764432 13466778888
Q ss_pred CceEEEEeCCCcEEEEeCCCCccceecCCCCCC----CccCceeCCCCCEEEEEEC-----CcEEEEecCCCceeEEeeC
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCS----PVIDPHLSSDGTMIAFVRD-----CELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~----~~~~~~~SpDg~~la~~~~-----~~l~~~~l~~g~~~~lt~~ 208 (776)
||..++-. ...|+++|.++++.+ .+...+.. +.....+.|+|+..+-... ..-.++.+.+|+.+++..+
T Consensus 69 dg~l~va~-~~gl~~~d~~tg~~~-~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~ 146 (295)
T d2ghsa1 69 DSKQLIAS-DDGLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD 146 (295)
T ss_dssp TTEEEEEE-TTEEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEE-eCccEEeecccceee-EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec
Confidence 98766654 467999999999887 55432221 2445678899974333322 1234445556766665432
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
-. ...++.||||++.+++..... ..|+
T Consensus 147 ~~------------------~~Ng~~~s~d~~~l~~~dt~~-----------------------------------~~I~ 173 (295)
T d2ghsa1 147 IS------------------IPNSICFSPDGTTGYFVDTKV-----------------------------------NRLM 173 (295)
T ss_dssp ES------------------SEEEEEECTTSCEEEEEETTT-----------------------------------CEEE
T ss_pred cC------------------CcceeeecCCCceEEEeeccc-----------------------------------ceee
Confidence 11 134788999999888764322 2345
Q ss_pred EEEcCCC------ceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 289 VVSAAGG------PVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 289 ~~d~~~~------~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
.++.+.. +.. .+.. ....+....+....+|.+.+ +.. ....|+++|+++.....+
T Consensus 174 ~~~~d~~~~~~~~~~~~~~~~-------~~~~g~pdG~~vD~~GnlWv-a~~---~~g~V~~~dp~G~~~~~i 235 (295)
T d2ghsa1 174 RVPLDARTGLPTGKAEVFIDS-------TGIKGGMDGSVCDAEGHIWN-ARW---GEGAVDRYDTDGNHIARY 235 (295)
T ss_dssp EEEBCTTTCCBSSCCEEEEEC-------TTSSSEEEEEEECTTSCEEE-EEE---TTTEEEEECTTCCEEEEE
T ss_pred EeeecccccccccceEEEecc-------CcccccccceEEcCCCCEEe-eee---CCCceEEecCCCcEeeEe
Confidence 5544321 111 1211 23344566788889997333 222 233699999876555554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=6.6e-05 Score=72.35 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=128.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
.+|. .+++ ||++|+.. .|+.|.+||+.+++....+..+.. .+. .+++|++.|+..+. +.+.++++..+..
T Consensus 16 ~~V~--c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~-~V~--~v~~~~~~l~s~s~D~~i~~~~~~~~~~ 87 (293)
T d1p22a2 16 KGVY--CLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVL--CLQYDERVIITGSSDSTVRVWDVNTGEM 87 (293)
T ss_dssp CCEE--EEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEE--EEECCSSEEEEEETTSCEEEEESSSCCE
T ss_pred CCEE--EEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEe--eeecccceeecccccccccccccccccc
Confidence 3555 3678 99998876 789999999999887745554333 344 45568888877664 5799999998876
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
......... ....+.+....++....+
T Consensus 88 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~---------------------------------- 114 (293)
T d1p22a2 88 LNTLIHHCE-------------------AVLHLRFNNGMMVTCSKD---------------------------------- 114 (293)
T ss_dssp EEEECCCCS-------------------CEEEEECCTTEEEEEETT----------------------------------
T ss_pred ccccccccc-------------------ccccccccccceeecccc----------------------------------
Confidence 554433221 123345555555554422
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCce
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
..+.+|+..+......... ...+...+....+.++ .++..+ .+..|..||+.+++...........-
T Consensus 115 --~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~--~~~~~s----~d~~i~~~d~~~~~~~~~~~~~~~~v 181 (293)
T d1p22a2 115 --RSIAVWDMASPTDITLRRV-----LVGHRAAVNVVDFDDK--YIVSAS----GDRTIKVWNTSTCEFVRTLNGHKRGI 181 (293)
T ss_dssp --SCEEEEECSSSSCCEEEEE-----ECCCSSCEEEEEEETT--EEEEEE----TTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred --cceeEeecccccccccccc-----ccccccccccceeccc--cccccc----CCCceeeecCCCCcEEEEEccccccc
Confidence 1246666665442221110 0233344445555444 333333 34569999999887644333221110
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecccc-CCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE-GDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~-~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
.. + .+++ ..+++...+| .|.+|++.......... ....+. .++++++.|+.. ..++. +.
T Consensus 182 ~~----~-------~~~~-~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~---~~~~~~~~l~sg-~~dg~--i~ 241 (293)
T d1p22a2 182 AC----L-------QYRD-RLVVSGSSDN--TIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSG-AYDGK--IK 241 (293)
T ss_dssp EE----E-------EEET-TEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEE---EEECCSSEEEEE-ETTSC--EE
T ss_pred cc----c-------cCCC-CeEEEecCCC--EEEEEecccceeeeeecccceeee---eccccceEEEEE-cCCCE--EE
Confidence 00 1 1222 2455555666 78899987765443333 233222 356777765444 44443 77
Q ss_pred EEEEE
Q 004067 442 LYCAK 446 (776)
Q Consensus 442 l~~~~ 446 (776)
+|.+.
T Consensus 242 iwd~~ 246 (293)
T d1p22a2 242 VWDLV 246 (293)
T ss_dssp EEEHH
T ss_pred EEECC
Confidence 88765
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=0.0002 Score=68.32 Aligned_cols=222 Identities=9% Similarity=0.012 Sum_probs=139.0
Q ss_pred eEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCc
Q 004067 82 KVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSK 159 (776)
Q Consensus 82 ~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~ 159 (776)
.|..+++++.+...+... ...+.++.|.+ ..++|+++ ..+.|+..++++..
T Consensus 11 ~I~~~~l~~~~~~~~~~~------------------------~~~~~~id~d~---~~~~lYw~D~~~~~I~~~~l~~~~ 63 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPN------------------------LRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAH 63 (266)
T ss_dssp SEEEEETTSCCCEEEECS------------------------CSSEEEEEEET---TTTEEEEEETTTTEEEEEEC----
T ss_pred eEEEEECCCCcceeeeCC------------------------CCceEEEEEEe---CCCEEEEEECCCCEEEEEEecCCC
Confidence 599999999887777642 13466788888 89999987 45568888887633
Q ss_pred ----cceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceE
Q 004067 160 ----PELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGY 233 (776)
Q Consensus 160 ----~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (776)
.+..+.... .....+++-+-++.|.++.. +.|.+.++++...+.+...... ...++
T Consensus 64 ~~~~~~~~~~~~~-~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~-----------------~P~~l 125 (266)
T d1ijqa1 64 GVSSYDTVISRDI-QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----------------KPRAI 125 (266)
T ss_dssp ----CEEEECSSC-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-----------------CEEEE
T ss_pred CCcceEEEEeCCC-CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCC-----------------CcceE
Confidence 221222222 22455777777888777654 3699999988776665543321 13367
Q ss_pred EECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCc
Q 004067 234 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDE 313 (776)
Q Consensus 234 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 313 (776)
+..|....|++..... ...|+..++++.....+-. ...
T Consensus 126 ~vd~~~g~ly~~~~~~----------------------------------~~~I~r~~~dGs~~~~l~~--------~~~ 163 (266)
T d1ijqa1 126 VVDPVHGFMYWTDWGT----------------------------------PAKIKKGGLNGVDIYSLVT--------ENI 163 (266)
T ss_dssp EEETTTTEEEEEECSS----------------------------------SCEEEEEETTSCCEEEEEC--------SSC
T ss_pred EEEcccCeEEEeccCC----------------------------------CcceeEeccCCCceecccc--------ccc
Confidence 7888777777653211 1357888888877666532 122
Q ss_pred ceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCce
Q 004067 314 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR 393 (776)
Q Consensus 314 ~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 393 (776)
.....+++.+.++.|+++.. ....|..+++++...+.+...... . +.+.+++.+++.+||+....+
T Consensus 164 ~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~~-~--------~~p~~lav~~~~ly~td~~~~-- 229 (266)
T d1ijqa1 164 QWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKR-L--------AHPFSLAVFEDKVFWTDIINE-- 229 (266)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTT-T--------SSEEEEEEETTEEEEEETTTT--
T ss_pred ceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCCc-c--------cccEEEEEECCEEEEEECCCC--
Confidence 34567889998887777642 234699999988777766554321 0 111223445666777654555
Q ss_pred EEEEEeCCCce
Q 004067 394 HLYLHDINGTC 404 (776)
Q Consensus 394 ~l~~~~~~g~~ 404 (776)
.|++++..++.
T Consensus 230 ~I~~~~~~~g~ 240 (266)
T d1ijqa1 230 AIFSANRLTGS 240 (266)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 89999876654
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=5.1e-07 Score=98.25 Aligned_cols=134 Identities=18% Similarity=0.244 Sum_probs=85.8
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc--ccccccchhhhHHHH-hCCcEEEEECCCCCCCCchhhhhh-hhh
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC--DSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEAS-IKH 612 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~--~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~~~~~~~~~-~~~ 612 (776)
|+..||.|.......+++||||++|||.-...-. ..+......-...++ ..+++||.++||-. -.| |... ...
T Consensus 81 L~LNI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg-~~G--Fl~~~~~~ 157 (579)
T d2bcea_ 81 LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVG-PLG--FLSTGDSN 157 (579)
T ss_dssp CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCH-HHH--HCCCSSTT
T ss_pred CEEEEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeeccccc-ccc--cccccccC
Confidence 8888888865433336899999999975322110 011111111123444 45799999999932 011 1000 011
Q ss_pred ccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCC
Q 004067 613 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVT 673 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~ 673 (776)
.-+..-+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 158 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 158 LPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred CCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 12344589999999999986 33589999999999999999887763 246899999988643
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.25 E-value=1.7e-06 Score=93.92 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=76.9
Q ss_pred CCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCC--CC--Cchhh-hhhhhhccCCccHHHHHH
Q 004067 551 PPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGT--AR--RGLKF-EASIKHNCGRIDAEDQLT 624 (776)
Q Consensus 551 ~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~--g~--~~~~~-~~~~~~~~~~~~~~D~~~ 624 (776)
.+++||||++|||.....-.... .+ -...|+ +.+.+||+++||-. |. .+... ........+..-+.|++.
T Consensus 136 ~~~lPV~V~ihGG~f~~Gs~~~~--~~--~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~ 211 (571)
T d1dx4a_ 136 TNGLPILIWIYGGGFMTGSATLD--IY--NADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQAL 211 (571)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCG--GG--CCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHH
T ss_pred CCCCeEEEEEeCCCccCCCCccc--cc--chhhhhhcCCeeEEeecceeccccccccccccccccccCCCCcccchHHHH
Confidence 37899999999975332111110 11 123444 55799999999942 10 00000 000111224456899999
Q ss_pred HHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCCCC
Q 004067 625 GAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTS 674 (776)
Q Consensus 625 ~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~~~ 674 (776)
|++|+.++ ..-|+++|.|+|+|.||..+..++... ...|+.+|+.++...
T Consensus 212 AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 212 AIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 99999986 334899999999999999998777642 357888888776543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.23 E-value=0.00011 Score=71.89 Aligned_cols=242 Identities=7% Similarity=-0.036 Sum_probs=129.8
Q ss_pred eeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC--Cce
Q 004067 127 VTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI--NEQ 202 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~--g~~ 202 (776)
+..++++| ||+.++.. .++.|++++.++.... +..... ....++|+|||+.++.... +.++++++.+ +..
T Consensus 30 ~e~iAv~p---dG~l~vt~~~~~~I~~i~p~g~~~~--~~~~~~-~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 30 LENLASAP---DGTIFVTNHEVGEIVSITPDGNQQI--HATVEG-KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp EEEEEECT---TSCEEEEETTTTEEEEECTTCCEEE--EEECSS-EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred cCCEEECC---CCCEEEEeCCCCEEEEEeCCCCEEE--EEcCCC-CcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence 45678999 99855444 5678999998876443 333333 3677899999995554443 4567766654 444
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
..+...... ....++.+.+||+ +++.. ...
T Consensus 104 ~~~~~~~~~----------------~~~n~i~~~~~g~-~~v~~-~~~-------------------------------- 133 (302)
T d2p4oa1 104 ETLLTLPDA----------------IFLNGITPLSDTQ-YLTAD-SYR-------------------------------- 133 (302)
T ss_dssp EEEEECTTC----------------SCEEEEEESSSSE-EEEEE-TTT--------------------------------
T ss_pred eeccccCCc----------------cccceeEEccCCC-EEeec-ccc--------------------------------
Confidence 455443221 1134677899986 33322 111
Q ss_pred CeEEEEEEEcCCCceEEEEcccC-CC-CCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce----EEEEE
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCG-GT-DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR----KVILV 356 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~----~~l~~ 356 (776)
..++.++..++.......... .+ ...........+.+ |+..+++... ....|++++.+.... .....
T Consensus 134 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~ 206 (302)
T d2p4oa1 134 --GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE 206 (302)
T ss_dssp --TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEET---TTTEEEEEEBCTTSCBCCCEEEEE
T ss_pred --ccceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCceeeecC---CCCeEEeccccccccccccccccC
Confidence 346777777766544322211 11 11111223334444 4555555432 234688888865432 11111
Q ss_pred eccCceeecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCCceeeccc--cCCeEEEEEEee---cCCCcEEEE
Q 004067 357 EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPIT--EGDWMVEQIVGV---NEASGQVYF 430 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~~~lt--~~~~~~~~~~~~---s~dg~~i~~ 430 (776)
.. .+.++..+.++ +|+....++ .|++++++|+.....+ .+-...... .| ++|++.||+
T Consensus 207 ~~-------------~pdgia~d~dG~l~va~~~~~--~V~~i~p~G~~~~~~~~~~~~~~pt~v-afg~~~~D~~~Lyv 270 (302)
T d2p4oa1 207 QT-------------NIDDFAFDVEGNLYGATHIYN--SVVRIAPDRSTTIIAQAEQGVIGSTAV-AFGQTEGDCTAIYV 270 (302)
T ss_dssp SC-------------CCSSEEEBTTCCEEEECBTTC--CEEEECTTCCEEEEECGGGTCTTEEEE-EECCSTTTTTEEEE
T ss_pred CC-------------CCcceEECCCCCEEEEEcCCC--cEEEECCCCCEEEEEecCCCCCCceEE-EEcCCCCCCCEEEE
Confidence 11 11233444444 444444444 7999999887543332 222223333 37 778999998
Q ss_pred EEccCC-------CceeeEEEEEe
Q 004067 431 TGTLDG-------PLESHLYCAKL 447 (776)
Q Consensus 431 ~~~~~~-------~~~~~l~~~~~ 447 (776)
.+.... .....++++++
T Consensus 271 tt~~g~~~~~~~~~~~~~~~~~~~ 294 (302)
T d2p4oa1 271 VTNGGMFLPPPTGVVPANVVRLEV 294 (302)
T ss_dssp EECTTSSSCCTTCCCCEEEEEEEC
T ss_pred ECCCCccCCCcCCcCCCeEEEEeC
Confidence 875421 11246777776
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.18 E-value=0.00027 Score=67.16 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=124.6
Q ss_pred eeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCce
Q 004067 127 VTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQ 202 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~ 202 (776)
+..+.|.+ ..++|+++ ..+.|+..+++++..+ .+..........+++..-++.|.+... +.|.+.++++...
T Consensus 38 ~~~ld~D~---~~~~iywsd~~~~~I~~~~l~g~~~~-~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 38 IIGLAFDC---VDKVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEET---TTTEEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEEEEe---CCCEEEEEECCCCeEEEEEcccCCcE-EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 44567777 78888886 4567999999988777 443322122455666666777766654 3688888887666
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+.+..... ....+++..|....|++.......
T Consensus 114 ~~l~~~~l-----------------~~p~~l~vdp~~g~ly~t~~~~~~------------------------------- 145 (263)
T d1npea_ 114 RVLFDTGL-----------------VNPRGIVTDPVRGNLYWTDWNRDN------------------------------- 145 (263)
T ss_dssp EEEECSSC-----------------SSEEEEEEETTTTEEEEEECCSSS-------------------------------
T ss_pred EEEecccc-----------------cCCcEEEEecccCcEEEeecCCCC-------------------------------
Confidence 55543321 113467788888877765432111
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCce
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
..|+..++++.....+-. ........+++.+.++.|+++. . ....|..++++++..+.+......
T Consensus 146 --~~I~r~~~dG~~~~~i~~--------~~~~~P~glaiD~~~~~lYw~d-~--~~~~I~~~~~~g~~~~~v~~~~~~-- 210 (263)
T d1npea_ 146 --PKIETSHMDGTNRRILAQ--------DNLGLPNGLTFDAFSSQLCWVD-A--GTHRAECLNPAQPGRRKVLEGLQY-- 210 (263)
T ss_dssp --CEEEEEETTSCCCEEEEC--------TTCSCEEEEEEETTTTEEEEEE-T--TTTEEEEEETTEEEEEEEEECCCS--
T ss_pred --cEEEEecCCCCCceeeee--------ecccccceEEEeecCcEEEEEe-C--CCCEEEEEECCCCCeEEEECCCCC--
Confidence 347777887776555522 1223445688888887776663 2 234699999988777766543211
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP 407 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~ 407 (776)
| .+++.+++.+||+....+ .|++++..+++..+
T Consensus 211 --------P--~~lav~~~~lYwtd~~~~--~I~~~~~~~g~~~~ 243 (263)
T d1npea_ 211 --------P--FAVTSYGKNLYYTDWKTN--SVIAMDLAISKEMD 243 (263)
T ss_dssp --------E--EEEEEETTEEEEEETTTT--EEEEEETTTTEEEE
T ss_pred --------c--EEEEEECCEEEEEECCCC--EEEEEECCCCccce
Confidence 1 123445566666655444 89999988765433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=0.00039 Score=65.97 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=137.3
Q ss_pred CCEEEEEECCcEEEEecCCCceeE------EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCe
Q 004067 181 GTMIAFVRDCELHVLNLLINEQRQ------LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPR 254 (776)
Q Consensus 181 g~~la~~~~~~l~~~~l~~g~~~~------lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 254 (776)
|..|+|...+.|..+++++....+ +..... .+.++.+.+..++|++.....
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~------------------~~~~ld~D~~~~~iywsd~~~----- 57 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAK------------------VIIGLAFDCVDKVVYWTDISE----- 57 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEE------------------EEEEEEEETTTTEEEEEETTT-----
T ss_pred CCEEEEeCCCeEEEEECCCccccccccccccccCCC------------------cEEEEEEEeCCCEEEEEECCC-----
Confidence 567899998899999987654321 111110 123566777777776643211
Q ss_pred EEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEee
Q 004067 255 FRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR 334 (776)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 334 (776)
..|+..+++++....+-. ........+++..-++.|+++. .
T Consensus 58 ------------------------------~~I~~~~l~g~~~~~v~~--------~~~~~p~~iAvD~~~~~lY~~d-~ 98 (263)
T d1npea_ 58 ------------------------------PSIGRASLHGGEPTTIIR--------QDLGSPEGIALDHLGRTIFWTD-S 98 (263)
T ss_dssp ------------------------------TEEEEEESSSCCCEEEEC--------TTCCCEEEEEEETTTTEEEEEE-T
T ss_pred ------------------------------CeEEEEEcccCCcEEEEE--------eccccccEEEEeccCCeEEEec-c
Confidence 347778888776665522 1223455677765566666654 2
Q ss_pred cCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCcccc--CCeEEEEeccCCceEEEEEeCCCceeeccccCC
Q 004067 335 SQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKY--SGGFIWASEKTGFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 335 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
....|.++++++...+.+....... | .++.-+ .+.+||+....+...|++.+++|...+.+....
T Consensus 99 --~~~~I~~~~~dg~~~~~l~~~~l~~---------p--~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~ 165 (263)
T d1npea_ 99 --QLDRIEVAKMDGTQRRVLFDTGLVN---------P--RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN 165 (263)
T ss_dssp --TTTEEEEEETTSCSCEEEECSSCSS---------E--EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT
T ss_pred --CCCEEEEEecCCceEEEEecccccC---------C--cEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeec
Confidence 2346899999887766654432110 0 011111 233444433334557999999998877665443
Q ss_pred eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceee-cCCCCeEEEEEcCCcCEEEEEeeCCCCCCE
Q 004067 413 WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-TNGKGKHVAVLDHNMRNFVDFHDSLDSPPR 491 (776)
Q Consensus 413 ~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 491 (776)
.....-+.+++.++.||+..... ..|.++++ +|. ..+.+ .......++++ ++.+|.++-... ..
T Consensus 166 ~~~P~glaiD~~~~~lYw~d~~~----~~I~~~~~--~g~----~~~~v~~~~~~P~~lav--~~~~lYwtd~~~---~~ 230 (263)
T d1npea_ 166 LGLPNGLTFDAFSSQLCWVDAGT----HRAECLNP--AQP----GRRKVLEGLQYPFAVTS--YGKNLYYTDWKT---NS 230 (263)
T ss_dssp CSCEEEEEEETTTTEEEEEETTT----TEEEEEET--TEE----EEEEEEECCCSEEEEEE--ETTEEEEEETTT---TE
T ss_pred ccccceEEEeecCcEEEEEeCCC----CEEEEEEC--CCC----CeEEEECCCCCcEEEEE--ECCEEEEEECCC---CE
Confidence 22222234788888899986543 36888888 554 22223 22222334444 466777665443 36
Q ss_pred EEEEEcCCCceeEeec
Q 004067 492 ILLCSLQDGSLVLPLY 507 (776)
Q Consensus 492 i~~~~~~~~~~~~~l~ 507 (776)
|++++..+|+.++.+.
T Consensus 231 I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 231 VIAMDLAISKEMDTFH 246 (263)
T ss_dssp EEEEETTTTEEEEEEC
T ss_pred EEEEECCCCccceEEC
Confidence 9999988887655544
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=98.01 E-value=4.9e-06 Score=80.96 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=72.4
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
...|+++++||..++.. ..|.. .....+|...++.|+++|++... ...+..+.... ....+.+...|++|..
T Consensus 68 ~~~pt~iiiHGw~~~~~--~~~~~--~~~~a~l~~~d~NVI~VDW~~~a--~~~Y~~a~~n~--~~Vg~~ia~~i~~l~~ 139 (337)
T d1rp1a2 68 TDKKTRFIIHGFIDKGE--ENWLL--DMCKNMFKVEEVNCICVDWKKGS--QTSYTQAANNV--RVVGAQVAQMLSMLSA 139 (337)
T ss_dssp TTSEEEEEECCCCCTTC--TTHHH--HHHHHHTTTCCEEEEEEECHHHH--SSCHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcCCCC--cchHH--HHHHHHHhcCCceEEEEeecccc--CcchHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45799999999765432 23321 22234566778999999996321 11222221110 0113456667777777
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
...++.+++.|+|||+||++|..++.+ ...+..++.+.|..
T Consensus 140 ~~g~~~~~vhlIGhSLGAhvAG~aG~~-~~~l~rItgLDPA~ 180 (337)
T d1rp1a2 140 NYSYSPSQVQLIGHSLGAHVAGEAGSR-TPGLGRITGLDPVE 180 (337)
T ss_dssp HHCCCGGGEEEEEETHHHHHHHHHHHT-STTCCEEEEESCCC
T ss_pred hcCCChhheEEEeecHHHhhhHHHHHh-hccccceeccCCCc
Confidence 666788999999999999999866664 44577777777654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.96 E-value=8.4e-05 Score=75.45 Aligned_cols=99 Identities=9% Similarity=-0.061 Sum_probs=67.4
Q ss_pred eeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 60 IGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
...+|||++|+-.... ...|-++|+++++..+++..+. ..+.....++| ||
T Consensus 77 t~gtpDGr~lfV~d~~----~~rVavIDl~t~k~~~ii~iP~----------------------g~gphgi~~sp---dg 127 (441)
T d1qnia2 77 TDGRYDGKYLFINDKA----NTRVARIRLDIMKTDKITHIPN----------------------VQAIHGLRLQK---VP 127 (441)
T ss_dssp ETTEEEEEEEEEEETT----TTEEEEEETTTTEEEEEEECTT----------------------CCCEEEEEECC---SS
T ss_pred ecccCCCCEEEEEcCC----CCEEEEEECCCCcEeeEEecCC----------------------CCCccceEEec---cC
Confidence 3458999998544333 3579999999999877765332 24678889999 99
Q ss_pred eEEEEe--CCC------------------cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC
Q 004067 140 KIIMVP--LPD------------------GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD 189 (776)
Q Consensus 140 ~~l~~~--~~~------------------~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~ 189 (776)
+++++. ... .+-.+|..+.+...++.... ......++|||++++....
T Consensus 128 ~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~--~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 128 KTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG--NLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp BCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS--CCCCEEECSSSSEEEEEES
T ss_pred CEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCC--CccceEECCCCCEEEEEec
Confidence 976654 111 13457777766543333222 3678999999998877763
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.88 E-value=1.2e-05 Score=77.98 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=74.0
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
...|+++++||..++.. ..|.. .....+|....+.|+++|+.... ...+..+.... ...-+.+...|+.|..
T Consensus 68 ~~~pt~iiiHG~~~~~~--~~~~~--~~~~a~l~~~d~NVi~VDW~~~a--~~~Y~~a~~n~--~~Vg~~ia~~i~~l~~ 139 (338)
T d1bu8a2 68 LDRKTRFIVHGFIDKGE--DGWLL--DMCKKMFQVEKVNCICVDWRRGS--RTEYTQASYNT--RVVGAEIAFLVQVLST 139 (338)
T ss_dssp TTSEEEEEECCSCCTTC--TTHHH--HHHHHHHTTCCEEEEEEECHHHH--SSCHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCceEEEeCcccCCCC--cccHH--HHHHHHHhcCCceEEEEechhhc--ccchHHHHHhH--HHHHHHHHHHHHHHHH
Confidence 46799999999755432 23322 22234566778999999986322 11222222110 0112334556666665
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
...++.+++.++|||+|+++|..++.+-+.++..+..+.|..
T Consensus 140 ~~g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 140 EMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp HHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred hcCCCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 556788999999999999999999987777778888777654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.84 E-value=0.0058 Score=52.89 Aligned_cols=258 Identities=13% Similarity=0.110 Sum_probs=146.2
Q ss_pred CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEE
Q 004067 65 DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMV 144 (776)
Q Consensus 65 DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~ 144 (776)
|+..+.|++..+| .-++++++ +++..+|+..+- . ..-.|.+ .=.+|.|
T Consensus 24 ~~d~ll~~~~seG--~vni~~l~--g~~~vkLtkePI--------------------------~-~~~~Pk~-~ldfi~f 71 (313)
T d2hu7a1 24 DGDKLLVVGFSEG--SVNAYLYD--GGETVKLNREPI--------------------------N-SVLDPHY-GVGRVIL 71 (313)
T ss_dssp TTTEEEEEEEETT--EEEEEEES--SSSCEECCSSCC--------------------------S-EECEECT-TBSEEEE
T ss_pred cCCcEEEEEeccc--eEEEEEEe--CCEEEEEecccc--------------------------c-CcCCCcc-CcceEEE
Confidence 4555777765454 24666555 888888886332 1 1112211 2345666
Q ss_pred eCC-------CcEEEEeCC-CCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCce
Q 004067 145 PLP-------DGIYFQDLS-CSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 145 ~~~-------~~l~~~d~~-~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
.+| ..||+.++. -|+.. ++.... .++-.+..=|++.++|+.. +..+++-+++|..+.|+.-+.-
T Consensus 72 ~RDV~kGkE~Hai~~~Nlk~~GEE~-~i~spk--~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpF--- 145 (313)
T d2hu7a1 72 VRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGF--- 145 (313)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCEE-ECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSC---
T ss_pred EeehhcCcceeeEEEEccCCCCeee-EecCCc--eEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCc---
Confidence 522 248889988 23333 454322 1444455569999999964 4577777889999999864421
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
++.-.=.|+.|+=...-.+ ...++|+-|+.+
T Consensus 146 -----------------sFVtDI~~d~I~G~g~~~g--------------------------------~~~sfF~adl~S 176 (313)
T d2hu7a1 146 -----------------GFVSDIRGDLIAGLGFFGG--------------------------------GRVSLFTSNLSS 176 (313)
T ss_dssp -----------------EEEEEEETTEEEEEEEEET--------------------------------TEEEEEEEETTT
T ss_pred -----------------ceEEeccCCeEEEEeeecC--------------------------------CcceEEEEeccc
Confidence 1111223666654432211 125589999999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
|..+.+ ...++.+..+..+++.|.+.-. ........| .+|+.++...++.-..-..+ .|.|..-
T Consensus 177 G~lri~---------tpkeGS~~~ay~~~gnKV~sdy-Et~gEsywi-t~D~~s~~yerve~P~kd~~-----sy~p~~I 240 (313)
T d2hu7a1 177 GGLRVF---------DSGEGSFSSASISPGMKVTAGL-ETAREARLV-TVDPRDGSVEDLELPSKDFS-----SYRPTAI 240 (313)
T ss_dssp EEEEEE---------CCSSEEEEEEEECTTSCEEEEE-EESSCEEEE-EECTTTCCEEECCCSSCHHH-----HHCCSEE
T ss_pred CCEEEe---------cCCCCcccceeEccCceeeecc-CCCCceEEE-EEecccCceeeeecCcccce-----eecceEE
Confidence 999988 5567889999999999863322 222234455 77999999887733221100 0111000
Q ss_pred -Ccccc-CCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 375 -GVTKY-SGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 375 -~~~~~-~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
|+..+ +++++.++.++|...|+. +|+. +............| +..|||+.+.
T Consensus 241 ~~~~Y~Pdd~L~iiakrdG~s~lF~---nGk~---in~p~G~~~gat~i---~~~iyfshsS 293 (313)
T d2hu7a1 241 TWLGYLPDGRLAVVARREGRSAVFI---DGER---VEAPQGNHGRVVLW---RGKLVTSHTS 293 (313)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE---TTEE---ECCCSSEEEEEEEE---TTEEEEEEEE
T ss_pred EeeeeCCCCcEEEEEecCCchheee---cceE---ecCCCCcccceEEE---CCEEEEeecc
Confidence 01122 345778888899888773 3332 22222223333334 3457887665
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.002 Score=61.00 Aligned_cols=231 Identities=10% Similarity=0.061 Sum_probs=114.2
Q ss_pred eeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCce
Q 004067 127 VTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQ 202 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~ 202 (776)
....++++ ||...+.. ..+.+..++..+.... .+..........+++++||+. |+.+ +.+..+...+...
T Consensus 16 P~~vavd~---dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~gvav~~~g~i--~v~d~~~~~i~~~~~~~~~ 89 (260)
T d1rwia_ 16 PSGVAVDS---AGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTV--YVTDFNNRVVTLAAGSNNQ 89 (260)
T ss_dssp EEEEEECT---TCCEEEEECSSSCEEEEEC----CEE-ECCCCSCCSCCCEEECTTCCE--EEEETTTEEEEECTTCSCC
T ss_pred CCEEEEcC---CCCEEEEEcCCCCEEEEEcCCCceEE-EeccCCccCceEEEEcCCCCE--EEeeeeeceeeeeeeccce
Confidence 45677888 88844433 3456777766655544 333332223566788888873 3333 3333333322222
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
..+.... +....++++.++|+ |++.....
T Consensus 90 ~~~~~~~-----------------~~~p~~iavd~~g~-i~v~d~~~--------------------------------- 118 (260)
T d1rwia_ 90 TVLPFDG-----------------LNYPEGLAVDTQGA-VYVADRGN--------------------------------- 118 (260)
T ss_dssp EECCCCS-----------------CCSEEEEEECTTCC-EEEEEGGG---------------------------------
T ss_pred eeeeeee-----------------eeecccccccccce-eEeecccc---------------------------------
Confidence 2221111 11134678899987 44432111
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCce
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 362 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 362 (776)
..+.+++..+........ ........++++|+|+. +++. . ....|+.+|.++.....+.... ..
T Consensus 119 --~~~~~~~~~~~~~~~~~~--------~~~~~p~~i~~~~~g~~-~v~~-~--~~~~i~~~d~~~~~~~~~~~~~-~~- 182 (260)
T d1rwia_ 119 --NRVVKLAAGSKTQTVLPF--------TGLNDPDGVAVDNSGNV-YVTD-T--DNNRVVKLEAESNNQVVLPFTD-IT- 182 (260)
T ss_dssp --TEEEEECTTCSSCEECCC--------CSCCSCCEEEECTTCCE-EEEE-G--GGTEEEEECTTTCCEEECCCSS-CC-
T ss_pred --ccccccccccceeeeeee--------cccCCcceeeecCCCCE-eeec-c--ccccccccccccceeeeeeccc-cC-
Confidence 124455554444333211 11222345788999984 3332 2 2346899998876544332111 00
Q ss_pred eecccccccCCCCccccCCeEEEEecc-CCceEEEEEeCCCceeeccccCCeE-EEEEEeecCCCcEEEEEEccCCCcee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDINGTCLGPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~~g~~~~~lt~~~~~-~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
.+.++..++++-+|+++. .+ .|++++.+++....+...... ...+ .++++|. ||++.... .
T Consensus 183 ---------~p~gi~~d~~g~l~vsd~~~~--~i~~~~~~~~~~~~~~~~~~~~P~~i-~~d~~g~-l~vad~~~----~ 245 (260)
T d1rwia_ 183 ---------APWGIAVDEAGTVYVTEHNTN--QVVKLLAGSTTSTVLPFTGLNTPLAV-AVDSDRT-VYVADRGN----D 245 (260)
T ss_dssp ---------SEEEEEECTTCCEEEEETTTT--EEEEECTTCSCCEECCCCSCCCEEEE-EECTTCC-EEEEEGGG----T
T ss_pred ---------CCccceeeeeeeeeeeecCCC--EEEEEeCCCCeEEEEccCCCCCeEEE-EEeCCCC-EEEEECCC----C
Confidence 011223344444455544 44 799999887765555443322 2333 4788886 66664443 3
Q ss_pred eEEEEEe
Q 004067 441 HLYCAKL 447 (776)
Q Consensus 441 ~l~~~~~ 447 (776)
.|++++.
T Consensus 246 rI~~i~~ 252 (260)
T d1rwia_ 246 RVVKLTS 252 (260)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 5776664
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.74 E-value=0.0031 Score=60.25 Aligned_cols=209 Identities=10% Similarity=0.065 Sum_probs=108.2
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
|..++++|||+ | |+++.. ...|.++|.+|.-.+.+..... .++ .........+.+
T Consensus 25 P~gvavd~dg~-i-~VaD~~---n~rI~v~d~~G~~~~~~~~~~~---------~~~---------~~~~p~~~~~~~-- 79 (279)
T d1q7fa_ 25 PSGVAVNAQND-I-IVADTN---NHRIQIFDKEGRFKFQFGECGK---------RDS---------QLLYPNRVAVVR-- 79 (279)
T ss_dssp EEEEEECTTCC-E-EEEEGG---GTEEEEECTTSCEEEEECCBSS---------STT---------CBSSEEEEEEET--
T ss_pred ccEEEEcCCCC-E-EEEECC---CCEEEEEeCCCCEEEEecccCC---------Ccc---------cccccccccccc--
Confidence 57889999998 4 444322 3679999988654444422100 000 001122334444
Q ss_pred CC-ceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCC
Q 004067 137 SK-KKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 137 ~d-g~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
+ +..++.. .+..|..++..+.... .+...........+..++|+.++.... ..+++++.++...+.+.....
T Consensus 80 -~~~~~~~~~~~~~~~i~~~~~~g~~~~-~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~-- 155 (279)
T d1q7fa_ 80 -NSGDIIVTERSPTHQIQIYNQYGQFVR-KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKH-- 155 (279)
T ss_dssp -TTTEEEEEECGGGCEEEEECTTSCEEE-EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTT--
T ss_pred -cccccceeccCCcccccccccccccee-ecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccccc--
Confidence 4 3334333 3346777777665554 443222222345677777764443332 347777765544433321111
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
+.....++..++|+ |++..... ..|+++|.
T Consensus 156 --------------~~~~~~i~~d~~g~-i~v~d~~~-----------------------------------~~V~~~d~ 185 (279)
T d1q7fa_ 156 --------------LEFPNGVVVNDKQE-IFISDNRA-----------------------------------HCVKVFNY 185 (279)
T ss_dssp --------------CSSEEEEEECSSSE-EEEEEGGG-----------------------------------TEEEEEET
T ss_pred --------------ccccceeeecccee-EEeeeccc-----------------------------------cceeeeec
Confidence 11123566778775 44333211 34788888
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
++.....+.. .+.......+++.++|++++ +. .. ....|.+++.++.-.+.+
T Consensus 186 ~G~~~~~~g~-------~g~~~~P~giavD~~G~i~V-ad-~~-~~~~v~~f~~~G~~~~~~ 237 (279)
T d1q7fa_ 186 EGQYLRQIGG-------EGITNYPIGVGINSNGEILI-AD-NH-NNFNLTIFTQDGQLISAL 237 (279)
T ss_dssp TCCEEEEESC-------TTTSCSEEEEEECTTCCEEE-EE-CS-SSCEEEEECTTSCEEEEE
T ss_pred CCceeeeecc-------cccccCCcccccccCCeEEE-EE-CC-CCcEEEEECCCCCEEEEE
Confidence 8776666522 22334556789999998443 32 22 234588888654323333
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.0026 Score=60.13 Aligned_cols=202 Identities=9% Similarity=0.020 Sum_probs=102.1
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.|..+++++||. |.++.... ...|..++..+.....+.. .. .......++++
T Consensus 15 ~P~~vavd~dG~-i~v~~~~~---~~~i~~~~~~~~~~~~~~~-~~----------------------~~~p~gvav~~- 66 (260)
T d1rwia_ 15 SPSGVAVDSAGN-VYVTSEGM---YGRVVKLATGSTGTTVLPF-NG----------------------LYQPQGLAVDG- 66 (260)
T ss_dssp CEEEEEECTTCC-EEEEECSS---SCEEEEEC----CEEECCC-CS----------------------CCSCCCEEECT-
T ss_pred CCCEEEEcCCCC-EEEEEcCC---CCEEEEEcCCCceEEEecc-CC----------------------ccCceEEEEcC-
Confidence 357889999998 43333322 2467777766554333321 11 01234567888
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 136 SSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||+..+....+.+..+...+.... .+..........+++.++|+.++.... ..++.++..+.........+
T Consensus 67 --~g~i~v~d~~~~~i~~~~~~~~~~-~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----- 138 (260)
T d1rwia_ 67 --AGTVYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG----- 138 (260)
T ss_dssp --TCCEEEEETTTEEEEECTTCSCCE-ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS-----
T ss_pred --CCCEEEeeeeeceeeeeeecccee-eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecc-----
Confidence 887444444455544444333333 222221122455677788763322211 23666665544433222111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+....+++.+|+|+ |++..... ..|+.++.++
T Consensus 139 ------------~~~p~~i~~~~~g~-~~v~~~~~-----------------------------------~~i~~~d~~~ 170 (260)
T d1rwia_ 139 ------------LNDPDGVAVDNSGN-VYVTDTDN-----------------------------------NRVVKLEAES 170 (260)
T ss_dssp ------------CCSCCEEEECTTCC-EEEEEGGG-----------------------------------TEEEEECTTT
T ss_pred ------------cCCcceeeecCCCC-Eeeecccc-----------------------------------cccccccccc
Confidence 11134678899987 44433211 3467778776
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
+....+.. ........+++.++|++ +++ +.. ...|++++.+++..+.
T Consensus 171 ~~~~~~~~--------~~~~~p~gi~~d~~g~l-~vs-d~~--~~~i~~~~~~~~~~~~ 217 (260)
T d1rwia_ 171 NNQVVLPF--------TDITAPWGIAVDEAGTV-YVT-EHN--TNQVVKLLAGSTTSTV 217 (260)
T ss_dssp CCEEECCC--------SSCCSEEEEEECTTCCE-EEE-ETT--TTEEEEECTTCSCCEE
T ss_pred ceeeeeec--------cccCCCccceeeeeeee-eee-ecC--CCEEEEEeCCCCeEEE
Confidence 65544421 22334567899999973 333 322 3358888887665444
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.68 E-value=0.013 Score=50.61 Aligned_cols=268 Identities=17% Similarity=0.183 Sum_probs=150.0
Q ss_pred CceEEE-Ee-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-------cEEEEecC-CCceeEEee
Q 004067 138 KKKIIM-VP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-------ELHVLNLL-INEQRQLTH 207 (776)
Q Consensus 138 dg~~l~-~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-------~l~~~~l~-~g~~~~lt~ 207 (776)
|+..|+ +. ..+.+-+.-+.+++.+ .|+..+-.....|.. .=..+.|+++- .||..+++ -|+..++..
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~v-kLtkePI~~~~~Pk~--~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s 100 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHY--GVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA 100 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCE-ECCSSCCSEECEECT--TBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEE-EEecccccCcCCCcc--CcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence 344344 43 4566656667788888 887654222222333 33388888862 48888887 355555532
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
+.. ++-++-.-|++.++|....+. ..
T Consensus 101 -pk~------------------vRI~S~~yddk~vvF~Gased-----------------------------------~~ 126 (313)
T d2hu7a1 101 -VKP------------------MRILSGVDTGEAVVFTGATED-----------------------------------RV 126 (313)
T ss_dssp -SCS------------------BEEEEEEECSSCEEEEEECSS-----------------------------------CE
T ss_pred -Cce------------------EEEEEeeecCceEEEecccCC-----------------------------------ce
Confidence 111 222334458999999864322 23
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHD 367 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 367 (776)
.+|-+++|+.+.+.. .+....+.++ .|++|+-..--..+...++.-|+.+|..+.++..++. .. .+
T Consensus 127 ~LYviegGklrkL~~-------vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS-~~--~a 192 (313)
T d2hu7a1 127 ALYALDGGGLRELAR-------LPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGS-FS--SA 192 (313)
T ss_dssp EEEEEETTEEEEEEE-------ESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEE-EE--EE
T ss_pred EEEEEeCCceeeecc-------CCCcceEEec----cCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCc-cc--ce
Confidence 556677999888754 2233333333 2555553333333556699999989998887754432 11 11
Q ss_pred ccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeE-------EEEEEeecCCCcEEEEEEccCCCcee
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWM-------VEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~-------~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
.+.+ +++++---+..|...+..+|+..++-.++.-...+ ....+.+.||++.+++.. .++ +.
T Consensus 193 y~~~--------gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiak-rdG--~s 261 (313)
T d2hu7a1 193 SISP--------GMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR-REG--RS 261 (313)
T ss_dssp EECT--------TSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEE-ETT--EE
T ss_pred eEcc--------CceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEe-cCC--ch
Confidence 1222 44553222445666666778887766555443211 123345789998644443 333 23
Q ss_pred eEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 441 HLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 441 ~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
.|+ + +|+ .+...+|..+-+.-- +..++|.+++..+|+.|. .+..|+.
T Consensus 262 ~lF---~--nGk-------~in~p~G~~~gat~i-~~~iyfshsSL~tP~kI~--~~~~~~~ 308 (313)
T d2hu7a1 262 AVF---I--DGE-------RVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIV--SLPSGEP 308 (313)
T ss_dssp EEE---E--TTE-------EECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEE--EETTCCE
T ss_pred hee---e--cce-------EecCCCCcccceEEE-CCEEEEeecccCCCceeE--EcCCCCc
Confidence 443 2 342 444455554322222 346999999999998877 4566764
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.00012 Score=69.13 Aligned_cols=107 Identities=20% Similarity=0.161 Sum_probs=61.7
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhC--CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
+.| ||++||..++.. .+ ..+..+...+.+. |+.|+++++.....+.. ...... .+.++.+.+...+
T Consensus 5 P~P-VVLvHGlg~s~~---~~-~~m~~l~~~l~~~~pG~~V~~l~~g~~~~~~~--~~~~~~-----~~~~~~e~v~~~I 72 (279)
T d1ei9a_ 5 PLP-LVIWHGMGDSCC---NP-LSMGAIKKMVEKKIPGIHVLSLEIGKTLREDV--ENSFFL-----NVNSQVTTVCQIL 72 (279)
T ss_dssp SCC-EEEECCTTCCSC---CT-TTTHHHHHHHHHHSTTCCEEECCCSSSHHHHH--HHHHHS-----CHHHHHHHHHHHH
T ss_pred CCc-EEEECCCCCCCC---Ch-HHHHHHHHHHHHHCCCeEEEEEEcCCCccccc--ccchhh-----hHHHHHHHHHHHH
Confidence 445 567899654422 11 1234456666655 99999999753221110 111111 1444444444343
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCC-ceEEEEEcCC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAP 671 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~~v~~~~ 671 (776)
++.....+++-++||||||.++-.++.+.+. .+...|.+++
T Consensus 73 ~~~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs 114 (279)
T d1ei9a_ 73 AKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp HSCGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred HhccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence 3322234689999999999999999998765 3666666543
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=0.00093 Score=68.41 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=78.3
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchh--------h--hHHHHhCCcEEEEECC-CCCCCC
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM--------R--AQYLRSKGILVWKLDN-RGTARR 602 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~--------~--~~~l~~~G~~v~~~d~-rg~g~~ 602 (776)
+..+.+|++...+. +.+.|+||++-||||++.+.-.+...-.. . -..+. +-..++.+|. -|.|.|
T Consensus 27 ~~~lfyw~~~s~~~---~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~-~~anllfiD~PvGtGfS 102 (421)
T d1wpxa1 27 DKHFFFWTFESRND---PAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWN-SNATVIFLDQPVNVGFS 102 (421)
T ss_dssp CCEEEEEEECCSSC---TTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGG-GSSEEEEECCSTTSTTC
T ss_pred CceEEEEEEEeCCC---CCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCcccc-cccCEEEEecCCCCCce
Confidence 56799998876542 25679999999999987643222110000 0 00011 1257888994 577765
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHc-CCC--CCCcEEEEeechHHHHHHHHHhh---CC---CceEEEEEcCCCC
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLA--KVGHIGLYGWSYGGYLSAITLAR---FP---DVFQCAVSGAPVT 673 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~i--d~~~i~l~G~S~GG~~a~~~a~~---~~---~~~~~~v~~~~~~ 673 (776)
-...... .. .....+|+..++....+. +.. ...++.|+|-|+||..+..+|.+ +. --++++++..|+.
T Consensus 103 y~~~~~~-~~--~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~ 179 (421)
T d1wpxa1 103 YSGSSGV-SN--TVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLT 179 (421)
T ss_dssp BCSSCCC-CS--HHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCC
T ss_pred ecCCccc-cc--hHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCcc
Confidence 2111100 00 011245666666555443 322 23579999999999998888753 22 2367999999887
Q ss_pred C
Q 004067 674 S 674 (776)
Q Consensus 674 ~ 674 (776)
+
T Consensus 180 d 180 (421)
T d1wpxa1 180 D 180 (421)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.35 E-value=0.016 Score=55.04 Aligned_cols=135 Identities=14% Similarity=0.060 Sum_probs=72.2
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeec
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 365 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 365 (776)
.+.+++.++.....+.. .........+++.++|..+ ++.. ....|+++|.++.....+-. ...
T Consensus 136 ~~~~~~~~g~~~~~~g~-------~~~~~~~~~i~~d~~g~i~-v~d~---~~~~V~~~d~~G~~~~~~g~-~g~----- 198 (279)
T d1q7fa_ 136 RVIIFDQNGNVLHKFGC-------SKHLEFPNGVVVNDKQEIF-ISDN---RAHCVKVFNYEGQYLRQIGG-EGI----- 198 (279)
T ss_dssp EEEEECTTSCEEEEEEC-------TTTCSSEEEEEECSSSEEE-EEEG---GGTEEEEEETTCCEEEEESC-TTT-----
T ss_pred eeeEeccCCceeecccc-------cccccccceeeeccceeEE-eeec---cccceeeeecCCceeeeecc-ccc-----
Confidence 35667766655555433 2233456678889999743 3322 23468899987644433311 110
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC-e-EEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-W-MVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~-~-~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
+. .+.+++.++++-+|+++..+...|.+++.+|.-.+.+.... . ....+ .+++||. ||+.. .+ ..+.+|
T Consensus 199 ---~~-~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~v-av~~dG~-l~V~~-~n--~~v~~f 269 (279)
T d1q7fa_ 199 ---TN-YPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDV-ALMDDGS-VVLAS-KD--YRLYIY 269 (279)
T ss_dssp ---SC-SEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEE-EEETTTE-EEEEE-TT--TEEEEE
T ss_pred ---cc-CCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEE-EEeCCCc-EEEEe-CC--CeEEEE
Confidence 10 11123334444355565544457888898877555554321 1 22333 4788986 56654 33 347777
Q ss_pred EEE
Q 004067 444 CAK 446 (776)
Q Consensus 444 ~~~ 446 (776)
+..
T Consensus 270 r~~ 272 (279)
T d1q7fa_ 270 RYV 272 (279)
T ss_dssp ECS
T ss_pred Eee
Confidence 765
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=97.06 E-value=0.0057 Score=63.40 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=48.8
Q ss_pred CcEEEEecCCCCccChHHHHHHHHHHHHC----------------------------C-----CCeEEEEecCCCCCCCC
Q 004067 711 GKLLLVHGMIDENVHFRHTARLINALVAA----------------------------R-----KPYEILIFPDERHMPRR 757 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~----------------------------~-----~~~~~~~~~~~~H~~~~ 757 (776)
.++||.+|..|.+|+...++...++|.-. | .+..+.++.++||.. .
T Consensus 373 irVLIy~Gd~D~icn~~Gte~~i~~L~w~g~~~f~~~~~~~~w~~~~~~~~~~~~vaG~~~~~~nltf~~V~~AGHmv-P 451 (483)
T d1ac5a_ 373 IEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHMV-P 451 (483)
T ss_dssp CEEEEEEETTCSTTCHHHHHHHHHHCEETTEESSCTTCEEEEEEECSSTTCCCCSCCEEEEEETTEEEEEETTCCSSH-H
T ss_pred CEEEEEECChhhcCCCHHHHHHHHhCCCccccccccCccccccccccccccCCcEEEEEEEEeCCeEEEEECCccccC-c
Confidence 58999999999999999999999887310 0 147788889999987 4
Q ss_pred CCcHHHHHHHHHHHHHH
Q 004067 758 HRDRIYMEERIWEFIER 774 (776)
Q Consensus 758 ~~~~~~~~~~~~~fl~~ 774 (776)
...+...++.+.+||.+
T Consensus 452 ~dqP~~a~~mi~~fl~~ 468 (483)
T d1ac5a_ 452 FDKSLVSRGIVDIYSND 468 (483)
T ss_dssp HHCHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHhCC
Confidence 45677777777777753
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.81 E-value=0.39 Score=50.01 Aligned_cols=70 Identities=9% Similarity=-0.069 Sum_probs=37.3
Q ss_pred CceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCC---CCCEEEEEE------CCcEEEEecCCCceeEEee
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS---DGTMIAFVR------DCELHVLNLLINEQRQLTH 207 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp---Dg~~la~~~------~~~l~~~~l~~g~~~~lt~ 207 (776)
+++.++...++.|+.+|..+|+..-..............-+| ++..++-.. ++.|+.+|+.||+..--..
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence 344444557889999999999876222111111111111122 333222111 1359999999998865443
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.67 E-value=0.0022 Score=63.35 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCceEEEEEcCCCCc----ccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCV----QLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 627 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~----~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~ 627 (776)
.++|+ |++||..+. ....++|......+.+.|.+.|+.|+++.....+.... . .+++...|+
T Consensus 6 ~~yPI-VLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p~~S~~~---R----------A~eL~~~I~ 71 (388)
T d1ku0a_ 6 NDAPI-VLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWD---R----------ACEAYAQLV 71 (388)
T ss_dssp CCCCE-EEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCSSBCHHH---H----------HHHHHHHHH
T ss_pred CCCCE-EEeCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccCCccCHHH---H----------HHHHHHHHh
Confidence 46766 558996543 22234554322235778999999999999864321110 0 112222222
Q ss_pred H---------HHHcC--------------CCCCCcEEEEeechHHHHHHHHHhh
Q 004067 628 W---------LIKQG--------------LAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 628 ~---------l~~~~--------------~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
- .++.. +-...+|-|+||||||.-+=+++..
T Consensus 72 ~~~~d~G~~hs~~~~~~~~~r~y~g~~~~~~~~~kVnLIgHS~GGld~Ryl~~~ 125 (388)
T d1ku0a_ 72 GGTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRVHIIAHSQGGQTARMLVSL 125 (388)
T ss_dssp CEEEECCHHHHHHHTSCSEEEEECCSCGGGGGTCCEEEEEETTHHHHHHHHHHH
T ss_pred hhhhhhhHhHHhhhcccccCccCcccccccccCCceeEeecccccHHHHHHHHH
Confidence 1 11100 1123589999999999998888764
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0083 Score=61.78 Aligned_cols=142 Identities=15% Similarity=0.065 Sum_probs=84.9
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhh----HHHH------hCCcEEEEECCC
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA----QYLR------SKGILVWKLDNR 597 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~----~~l~------~~G~~v~~~d~r 597 (776)
.+...++..+..|++...+. +...|+++++-||||++.+.-.+...-.... ..+. .+-..++.+|.|
T Consensus 25 yl~~~~~~~lffw~~~s~~~---~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~anllfIDqP 101 (452)
T d1ivya_ 25 YLKSSGSKHLHYWFVESQKD---PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESP 101 (452)
T ss_dssp EEECSTTEEEEEEEECCSSC---GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCS
T ss_pred eeecCCCceEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcccCEEEEecC
Confidence 35556778899999876542 2457999999999998765422211000000 0011 122678899975
Q ss_pred -CCCCCchhhhhhhhhccCCccHHHHHHHHH-HHHHcCCCCCCcEEEEeechHHHHHHHHHhh---CC-CceEEEEEcCC
Q 004067 598 -GTARRGLKFEASIKHNCGRIDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLAR---FP-DVFQCAVSGAP 671 (776)
Q Consensus 598 -g~g~~~~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~---~~-~~~~~~v~~~~ 671 (776)
|.|.|-..-.. ...+ ......|+.+++. ++...+.....++.|+|-||||..+-.+|.. .+ -.++++++.+|
T Consensus 102 vGtGfS~~~~~~-~~~~-~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng 179 (452)
T d1ivya_ 102 AGVGFSYSDDKF-YATN-DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNG 179 (452)
T ss_dssp TTSTTCEESSCC-CCCB-HHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESC
T ss_pred CCcccccCCCCC-CCCC-cHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCC
Confidence 88866321100 0000 0012445555554 4444444455689999999999998888753 22 34799999999
Q ss_pred CCC
Q 004067 672 VTS 674 (776)
Q Consensus 672 ~~~ 674 (776)
+.+
T Consensus 180 ~~d 182 (452)
T d1ivya_ 180 LSS 182 (452)
T ss_dssp CSB
T ss_pred ccC
Confidence 876
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.17 E-value=0.96 Score=47.07 Aligned_cols=68 Identities=12% Similarity=0.018 Sum_probs=37.4
Q ss_pred CceEEEEeCCCcEEEEeCCCCcccee--cCCCCCCC---ccCceeCCCCCEEEEEE------CCcEEEEecCCCceeEEe
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPELK--LSSSSCSP---VIDPHLSSDGTMIAFVR------DCELHVLNLLINEQRQLT 206 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~~~--l~~~~~~~---~~~~~~SpDg~~la~~~------~~~l~~~~l~~g~~~~lt 206 (776)
+++.++...++.|+.+|.++|+.... +....... ...|.+. +++.++-.. .+.|+.+|..||+..--.
T Consensus 128 ~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 206 (573)
T d1kb0a2 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (573)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCcEEEEecccceeeeccccccceecccCccCCcceEEeecceEEE-eccEEEeeccccccccceEEEEecCCccceeee
Confidence 56655556788999999999987521 21111110 1111111 333222111 235999999999876543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.02 E-value=1.1 Score=46.46 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=38.5
Q ss_pred CceEEEEeCCCcEEEEeCCCCccceecCCC---CCCC-ccCceeCCCCCEEEEEE------CCcEEEEecCCCceeEEe
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPELKLSSS---SCSP-VIDPHLSSDGTMIAFVR------DCELHVLNLLINEQRQLT 206 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~---~~~~-~~~~~~SpDg~~la~~~------~~~l~~~~l~~g~~~~lt 206 (776)
+++.++...++.|+.+|.++|+........ .... ...|... +++.++-.+ .+.|+.+|+.||+..-..
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 192 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence 466555557889999999999875221111 1111 1122222 343322222 236999999999886543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.77 E-value=0.73 Score=42.39 Aligned_cols=163 Identities=10% Similarity=0.010 Sum_probs=100.7
Q ss_pred eEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc-eeEEee
Q 004067 129 RYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE-QRQLTH 207 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~-~~~lt~ 207 (776)
+.--.| ..+-|+.-....|.+.|+++.+.....+..+ .+..-.|- +.+.|+++....+|-|++++.. ...+..
T Consensus 67 sAIMhP---~~~IiALrag~~LQiFnletK~klks~~~~e--~VvfWkWi-s~~~L~lVT~taVYHW~~~g~s~P~k~fd 140 (327)
T d1utca2 67 SAIMNP---ASKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWI-SLNTVALVTDNAVYHWSMEGESQPVKMFD 140 (327)
T ss_dssp EEEECS---SSSEEEEEETTEEEEEETTTTEEEEEEECSS--CCCEEEES-SSSEEEEECSSEEEEEESSSSCCCEEEEE
T ss_pred hhhcCC---CCcEEEEecCCeEEEEehhHhhhhceEEcCC--CcEEEEec-CCCEEEEEcCCceEEEcccCCCCchhhhh
Confidence 334567 7888888888889999999987653333333 36667786 4568999999999999997543 334433
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.... +.+.. +-.+.-++|+|+++.......... -...+
T Consensus 141 R~~~---L~~~Q----------IInY~~d~~~kW~~l~GI~~~~~~-----------------------------i~G~m 178 (327)
T d1utca2 141 RHSS---LAGCQ----------IINYRTDAKQKWLLLTGISAQQNR-----------------------------VVGAM 178 (327)
T ss_dssp CCGG---GTTCE----------EEEEEECTTSCEEEEEEEEEETTE-----------------------------EEEEE
T ss_pred hccc---ccCce----------EEEEEECCCCCEEEEEeEecCCCc-----------------------------eeEEE
Confidence 2211 11111 335677888998887654221111 11457
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccC--CeEEEEEEeecCceEEEEEEECCC
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
.+|..+.+....| .++......+...-+ -..++....|+.....|.++++.+
T Consensus 179 QLYS~er~~sQ~i---------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~ 232 (327)
T d1utca2 179 QLYSVDRKVSQPI---------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 232 (327)
T ss_dssp EEEETTTTEEEEE---------CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSC
T ss_pred EEEEeccCcCccc---------cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCC
Confidence 7888888777777 344444444433222 224444445666667888888855
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.98 Score=41.82 Aligned_cols=110 Identities=9% Similarity=-0.139 Sum_probs=57.9
Q ss_pred CCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe
Q 004067 66 DNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP 145 (776)
Q Consensus 66 G~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~ 145 (776)
|+.|+............++++|+++++.+++...+. ++.-.+ ...- +++.+++.
T Consensus 4 g~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~----------------------~R~~~~-~~~~---~~~iyv~G 57 (288)
T d1zgka1 4 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQV----------------------PRSGLA-GCVV---GGLLYAVG 57 (288)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSS----------------------CCBSCE-EEEE---TTEEEEEC
T ss_pred CCEEEEECCcCCCCCceEEEEECCCCeEEECCCCCC----------------------ccceeE-EEEE---CCEEEEEe
Confidence 455554433233334689999999999888765322 111112 1223 55555553
Q ss_pred ----------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE------CCcEEEEecCCCce
Q 004067 146 ----------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR------DCELHVLNLLINEQ 202 (776)
Q Consensus 146 ----------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~------~~~l~~~~l~~g~~ 202 (776)
...+++++|..+...+ .+...+..+.......-+++.+++.. ..+.+.++..+...
T Consensus 58 G~~~~~~~~~~~~~~~~yd~~~~~w~-~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~ 129 (288)
T d1zgka1 58 GRNNSPDGNTDSSALDCYNPMTNQWS-PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 129 (288)
T ss_dssp CEEEETTEEEECCCEEEEETTTTEEE-ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CcccCCCCccccchhhhccccccccc-ccccccceecceeccccceeeEEecceecccccceeeeeccccCcc
Confidence 1246899999888877 66544333333333333555443321 12355555555543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.90 E-value=0.19 Score=49.01 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=61.9
Q ss_pred CCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 64 PDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 64 pDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
+||++|.-..+.+ ..|-++|+++-+..+++..+. ..+.+.++..+ +++..+
T Consensus 97 yDGrylFVNDkan----~RVAvIdl~~fkt~kIi~iPn----------------------~~~~HG~r~~~---~p~T~Y 147 (459)
T d1fwxa2 97 YDGRFLFMNDKAN----TRVARVRCDVMKCDAILEIPN----------------------AKGIHGLRPQK---WPRSNY 147 (459)
T ss_dssp EEEEEEEEEETTT----TEEEEEETTTTEEEEEEECSS----------------------CCSEEEEEECC---SSBCSE
T ss_pred cceeEEEEEcCCC----ceEEEEECcceeeeEEEecCC----------------------CCCCceeeccc---CCCeEE
Confidence 4999886544433 579999999999888876544 23455555555 555444
Q ss_pred Ee----------CC-----------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE
Q 004067 144 VP----------LP-----------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR 188 (776)
Q Consensus 144 ~~----------~~-----------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~ 188 (776)
+. .+ +.+..+|.++.+...++.-.. ......+||||+++++++
T Consensus 148 V~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g--~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 148 VFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp EEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEE
T ss_pred EEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC--ChhccccCCCCCEEEEEe
Confidence 32 11 125578988877664443322 367899999999888876
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.64 E-value=2 Score=40.97 Aligned_cols=149 Identities=11% Similarity=0.036 Sum_probs=70.7
Q ss_pred EEEEEEEcCCCceEE--EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEee--cCceEEEEEEECCCCceEEEEEeccC
Q 004067 285 VRLGVVSAAGGPVSW--MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR--SQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
..|+++|+++.+... +....+.+.......+--++.-.+||+..+++.+- ....-+|+.++.++.+.+-+..-..+
T Consensus 68 G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~ 147 (340)
T d1v04a_ 68 GKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK 147 (340)
T ss_dssp CEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT
T ss_pred CeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCc
Confidence 568999998765433 33221111000000011123336788844444443 23344566666665544433322222
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccC---------------CceEEEEEeCCCceeeccccCCeEEEEEEeecCCC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKT---------------GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEAS 425 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------------g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg 425 (776)
.. ..|..- ..-.++++|++.+.. +...++.++ +++.+.+..+-....++ .+|+|+
T Consensus 148 ~~------~~pNDv-~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~--~~~~~~~~~~l~~pNGI-~~s~d~ 217 (340)
T d1v04a_ 148 LL------PSVNDI-VAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS--PNDVRVVAEGFDFANGI-NISPDG 217 (340)
T ss_dssp TC------SSEEEE-EEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC--SSCEEEEEEEESSEEEE-EECTTS
T ss_pred cc------cCccce-EEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc--CCceEEEcCCCCcccee-EECCCC
Confidence 11 111110 022355677764321 123566665 44444444332223344 489999
Q ss_pred cEEEEEEccCCCceeeEEEEEe
Q 004067 426 GQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 426 ~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
+.||+..+... .|++.++
T Consensus 218 ~~lyVa~t~~~----~i~~y~~ 235 (340)
T d1v04a_ 218 KYVYIAELLAH----KIHVYEK 235 (340)
T ss_dssp SEEEEEEGGGT----EEEEEEE
T ss_pred CEEEEEeCCCC----eEEEEEe
Confidence 99999988753 4555555
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.40 E-value=2.2 Score=40.55 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=71.8
Q ss_pred EEEEEcCCCceEEEEcccCCCCCCCCcceE-EEEEeccCCe--EEEEEEeecC--ceEEEEEEECCCCceEEEEEeccCc
Q 004067 287 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYL-ARVNWMHGNI--LTAQVLNRSQ--TKLKVLKFDIKTGQRKVILVEELDS 361 (776)
Q Consensus 287 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~SpDg~--~l~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~~~~~ 361 (776)
|++||++++++..+... ....+ ..-.|.-+++ -+++.++|.. ..-.+|.+|...+..+.+.....+.
T Consensus 52 l~vYdL~G~~l~~~~~G--------r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~ 123 (353)
T d1h6la_ 52 LAVYSLEGKMLHSYHTG--------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPI 123 (353)
T ss_dssp CEEEETTCCEEEECCSS--------CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCE
T ss_pred EEEEcCCCcEEEecccC--------CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccccccc
Confidence 79999988877766321 11111 1112233444 5778888863 3455677776666655543322111
Q ss_pred eeecccccccCCCCc----cccCCe-EEEEeccCCceEEEEEeCCC-ce-----eeccccCCeEEEEEEeecCCCcEEEE
Q 004067 362 WVNLHDCFTPLDKGV----TKYSGG-FIWASEKTGFRHLYLHDING-TC-----LGPITEGDWMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~----~~~~~~-~~~~s~~~g~~~l~~~~~~g-~~-----~~~lt~~~~~~~~~~~~s~dg~~i~~ 430 (776)
-.... ...++ ....+. ++|++++.|.-..|.+..++ +. .+.+... ..+.+ +.++...++||+
T Consensus 124 ~~~~~-----~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-~q~EG-CVvDde~~~Lyi 196 (353)
T d1h6la_ 124 ASAID-----EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-SQTEG-MAADDEYGSLYI 196 (353)
T ss_dssp ECSSS-----SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-SCEEE-EEEETTTTEEEE
T ss_pred ccccC-----cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-Cccce-EEEeCCCCcEEE
Confidence 00000 01111 112233 56778888855555554333 21 2223222 22333 347888887777
Q ss_pred EEccCCCceeeEEEEEeCC
Q 004067 431 TGTLDGPLESHLYCAKLYP 449 (776)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~ 449 (776)
..-. ..+|+++++.
T Consensus 197 sEE~-----~Giw~~~a~~ 210 (353)
T d1h6la_ 197 AEED-----EAIWKFSAEP 210 (353)
T ss_dssp EETT-----TEEEEEESST
T ss_pred ecCc-----cceEEEEecc
Confidence 7432 4688888743
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=94.31 E-value=0.17 Score=46.75 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
..++...++.++++. ...+|.+.|||+||.+|..++..
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~ 153 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGMD 153 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHHH
Confidence 345666666665543 34699999999999999988863
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.24 E-value=3.6 Score=42.30 Aligned_cols=82 Identities=11% Similarity=0.029 Sum_probs=46.7
Q ss_pred eEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccCCeEEE
Q 004067 338 KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVE 416 (776)
Q Consensus 338 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~~~~~~ 416 (776)
...|..+|+++|+..--.....+.+. +.-...++++|..+.+| .|+.+|.++|+.- +.........
T Consensus 437 ~G~l~A~D~~tGk~~W~~~~~~~~~g-----------g~l~TagglVF~G~~dg--~l~A~Da~tGe~LW~~~l~~~~~~ 503 (560)
T d1kv9a2 437 SGALLAWDPVKQKAAWKVPYPTHWNG-----------GTLSTAGNLVFQGTAAG--QMHAYSADKGEALWQFEAQSGIVA 503 (560)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCC-----------CEEEETTTEEEEECTTS--EEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccceEEEeCCCCeEeeeccCCCCCCC-----------ceeEECCCEEEEECCCC--cEEEEECCCCcEeEEEECCCCccc
Confidence 35789999999987644443322211 10112456888887777 8999998888643 2222111112
Q ss_pred EEEeecCCCcE-EEEEE
Q 004067 417 QIVGVNEASGQ-VYFTG 432 (776)
Q Consensus 417 ~~~~~s~dg~~-i~~~~ 432 (776)
.+..+..|||+ |++.+
T Consensus 504 ~P~ty~~dGkqyv~v~a 520 (560)
T d1kv9a2 504 APMTFELAGRQYVAIMA 520 (560)
T ss_dssp CCEEEEETTEEEEEEEE
T ss_pred cCEEEEECCEEEEEEEe
Confidence 33446678875 44444
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.02 E-value=4 Score=42.01 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=42.9
Q ss_pred EEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccCCeEEEE
Q 004067 339 LKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQ 417 (776)
Q Consensus 339 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~~~~~~~ 417 (776)
..|..+|+++|+..=-.....+.+.. . ....++++|+.+.+| .|+.+|.++|+.- +...+......
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g----------~-l~TagglVf~G~~dg--~l~A~Da~tGe~lW~~~l~~~~~a~ 510 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGG----------T-LYTKGGLVWYATLDG--YLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSB----------C-EEETTTEEEEECTTS--EEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcc----------e-eEecCCEEEEECCCC--eEEEEECCCCcEEEEEECCCCceec
Confidence 46888899988876444333222210 0 112355788877777 8999998877642 22222211223
Q ss_pred EEeecCCCcE
Q 004067 418 IVGVNEASGQ 427 (776)
Q Consensus 418 ~~~~s~dg~~ 427 (776)
+..+..|||+
T Consensus 511 P~ty~~dGkq 520 (571)
T d2ad6a1 511 PMTYSFKGKQ 520 (571)
T ss_dssp CEEEEETTEE
T ss_pred ceEEEECCEE
Confidence 3445668875
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=93.94 E-value=0.23 Score=45.86 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
..++...+..+.++. ...+|.+.|||+||.+|..++..
T Consensus 115 ~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~ 152 (265)
T d3tgla_ 115 QNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCALD 152 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHHH
Confidence 344556665555543 34689999999999999998753
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.89 E-value=3.5 Score=40.94 Aligned_cols=41 Identities=20% Similarity=0.447 Sum_probs=29.9
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCC
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPP 100 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 100 (776)
..|..++|.|||+.++ .++. ...|++++.++++.+.+....
T Consensus 27 ~~P~~la~~pdg~llV--ter~---~G~i~~v~~~~g~~~~i~~~~ 67 (450)
T d1crua_ 27 NKPHALLWGPDNQIWL--TERA---TGKILRVNPESGSVKTVFQVP 67 (450)
T ss_dssp SSEEEEEECTTSCEEE--EETT---TCEEEEECTTTCCEEEEEECT
T ss_pred CCceEEEEeCCCeEEE--EEec---CCEEEEEECCCCcEeecccCC
Confidence 4568999999998654 3321 136999999999888777543
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=93.63 E-value=0.17 Score=47.02 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
..++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 345666666666553 34589999999999999988864
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=93.26 E-value=0.15 Score=47.39 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
..++...++.++++. ..-+|.++|||+||.+|..++..
T Consensus 121 ~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~~ 158 (269)
T d1tiba_ 121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGAD 158 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHHH
Confidence 345666666665553 33599999999999999998864
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.07 E-value=5.8 Score=40.88 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=18.5
Q ss_pred CceEEEEeCCCcEEEEeCCCCccc
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPE 161 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~ 161 (776)
+++.++...++.|+.+|.++|+..
T Consensus 117 ~~~i~~~t~~~~l~alda~tG~~~ 140 (582)
T d1flga_ 117 GDKVFFGTLDASVVALNKNTGKVV 140 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEE
T ss_pred CCceEEecCCCeEEEeccccccee
Confidence 455555567889999999998765
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=92.96 E-value=6 Score=40.83 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=36.6
Q ss_pred eEEEEe-CCCcEEEEeCCCCccceecCCCCC----CCccCceeCCCCCEEEEEE-------CCcEEEEecCCCceeEE
Q 004067 140 KIIMVP-LPDGIYFQDLSCSKPELKLSSSSC----SPVIDPHLSSDGTMIAFVR-------DCELHVLNLLINEQRQL 205 (776)
Q Consensus 140 ~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~----~~~~~~~~SpDg~~la~~~-------~~~l~~~~l~~g~~~~l 205 (776)
.+|++. .++.|+.+|..+|+.......... .....|.+. +++ |+.-. ++.|+.+|+.||+..--
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~-vivg~~~~e~~~~G~v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE-CCe-EEEeeccccccccCceEEEECCCCcEEEE
Confidence 356655 578999999999987732221110 011223333 332 32222 24699999999988643
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=92.47 E-value=0.13 Score=47.58 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh---CCCceEEEEEcCCCC
Q 004067 620 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAPVT 673 (776)
Q Consensus 620 ~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~---~~~~~~~~v~~~~~~ 673 (776)
.++...++.++++. ...+|.+.|||+||.+|..++.. ....+++..-.+|-.
T Consensus 109 ~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~l~~~~~~~~~~tFG~Prv 163 (261)
T d1uwca_ 109 DQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRS 163 (261)
T ss_dssp HHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHHHTTCSSEEEEEESCCCC
T ss_pred HHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHHHHhcCCCcceEEecCccc
Confidence 45666666666653 33589999999999999988754 222345555555543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=6.8 Score=35.53 Aligned_cols=59 Identities=12% Similarity=-0.041 Sum_probs=36.8
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE----------CCcEEEEecCCCceeEEee
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR----------DCELHVLNLLINEQRQLTH 207 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~----------~~~l~~~~l~~g~~~~lt~ 207 (776)
..++++|+++++.+ .++.-+..+.......-+++.+++-. .++++++|+.+...+++..
T Consensus 19 ~~~~~yd~~t~~W~-~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~ 87 (288)
T d1zgka1 19 SYLEAYNPSNGTWL-RLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP 87 (288)
T ss_dssp CCEEEEETTTTEEE-ECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC
T ss_pred ceEEEEECCCCeEE-ECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccccc
Confidence 46889999999887 66654443333333343554444421 1368899988887776643
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.10 E-value=11 Score=37.13 Aligned_cols=39 Identities=10% Similarity=-0.012 Sum_probs=23.1
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccC
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHG 324 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpD 324 (776)
.|++++.++++.+.+..-.........+.....+++.||
T Consensus 49 ~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 49 KILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred EEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 477888888877665432111111234556778899886
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=88.12 E-value=1 Score=43.83 Aligned_cols=102 Identities=7% Similarity=-0.035 Sum_probs=62.4
Q ss_pred eEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCC-CCCccCceeCCCCC--EEEEEECC-------------
Q 004067 129 RYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSS-CSPVIDPHLSSDGT--MIAFVRDC------------- 190 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~SpDg~--~la~~~~~------------- 190 (776)
.+++..-.+||++|++. .+..|-++|+++-+.. ++...+ ......++.+++++ +++.....
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~-kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCD-AILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE-EEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeee-EEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 34443233499999988 5678999999998876 433222 11244445555555 44433321
Q ss_pred ------cEEEEecCCCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCC
Q 004067 191 ------ELHVLNLLINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSS 250 (776)
Q Consensus 191 ------~l~~~~l~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 250 (776)
-+.++|.++.++. |+...+. .....++|||+++++.+.+.+
T Consensus 168 ~~~y~~~~t~ID~~tm~V~~QV~V~g~-------------------ld~~~~s~dGK~af~TsyNSE 215 (459)
T d1fwxa2 168 VANYVNVFTAVDADKWEVAWQVLVSGN-------------------LDNCDADYEGKWAFSTSYNSE 215 (459)
T ss_dssp GG-EEEEEEEEETTTTEEEEEEEESSC-------------------CCCEEECSSSSEEEEEESCTT
T ss_pred hhhcceEEEEEecCCceEEEEeeeCCC-------------------hhccccCCCCCEEEEEecccc
Confidence 1567888887654 4444332 235779999998888776543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=84.66 E-value=23 Score=35.93 Aligned_cols=82 Identities=12% Similarity=-0.010 Sum_probs=46.5
Q ss_pred EEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccCCeEEEE
Q 004067 339 LKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQ 417 (776)
Q Consensus 339 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~~~~~~~ 417 (776)
..|..+|+.+|+..=-.....+.+. +.....++++|+.+.+| .|+.+|.++|+.- ...........
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~g-----------g~lstagglVF~G~~dg--~l~A~Da~TGe~LW~~~~~~~~~~~ 523 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNG-----------GTLTTAGNVVFQGTADG--RLVAYHAATGEKLWEAPTGTGVVAA 523 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCC-----------CEEEETTTEEEEECTTS--EEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccEEEeCCCCCceEeeecCCCCCCC-----------ceEEEcCCEEEEECCCC--eEEEEECCCCcEeEEEECCCCcccc
Confidence 4789999999987654443322111 10112456888877777 8999998888642 12111111123
Q ss_pred EEeecCCCcE-EEEEEc
Q 004067 418 IVGVNEASGQ-VYFTGT 433 (776)
Q Consensus 418 ~~~~s~dg~~-i~~~~~ 433 (776)
+..+..|||+ |++.+.
T Consensus 524 P~ty~~~GkQYv~v~~G 540 (573)
T d1kb0a2 524 PSTYMVDGRQYVSVAVG 540 (573)
T ss_dssp CEEEEETTEEEEEEEEC
T ss_pred CEEEEECCEEEEEEEeC
Confidence 3445678874 444443
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=82.64 E-value=4.1 Score=34.94 Aligned_cols=50 Identities=16% Similarity=0.061 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC----CCceEEEEEcC
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGA 670 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----~~~~~~~v~~~ 670 (776)
..++...+....++= ...||+|+|+|.|+.++..++..- .+++.+++++.
T Consensus 79 ~~~~~~~i~~~a~~C--P~tkiVL~GYSQGA~V~~~~~~~l~~~~~~~V~avvlfG 132 (197)
T d1cexa_ 79 IREMLGLFQQANTKC--PDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFG 132 (197)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHHSCHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHHHhhC--CCCeEEEeeeccccHhhhcccccCChhhhhhEEEEEEEe
Confidence 345555555555441 347999999999999998888653 24577777654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=81.67 E-value=3.1 Score=40.10 Aligned_cols=125 Identities=4% Similarity=-0.127 Sum_probs=72.4
Q ss_pred ceeCCCCCEEEEEECC------------cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeE
Q 004067 175 PHLSSDGTMIAFVRDC------------ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFI 242 (776)
Q Consensus 175 ~~~SpDg~~la~~~~~------------~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l 242 (776)
.....|||.++|-... .++++|+++++..++....... ..+ ..+..+.+||+.+
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~------~~~--------~~~~~~~~~g~i~ 90 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH------DMF--------CPGISMDGNGQIV 90 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC------CCS--------SCEEEECTTSCEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc------ccc--------eeEEEEecCCcEE
Confidence 3455677777765421 2788999998765543221110 000 1245688999865
Q ss_pred EEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec
Q 004067 243 AFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM 322 (776)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S 322 (776)
+....+. ..+.+||.+++....+... .........+..
T Consensus 91 v~Gg~~~-----------------------------------~~~~~yd~~~~~w~~~~~~-------~~~r~~~~~~~~ 128 (387)
T d1k3ia3 91 VTGGNDA-----------------------------------KKTSLYDSSSDSWIPGPDM-------QVARGYQSSATM 128 (387)
T ss_dssp EECSSST-----------------------------------TCEEEEEGGGTEEEECCCC-------SSCCSSCEEEEC
T ss_pred EeecCCC-----------------------------------cceeEecCccCcccccccc-------cccccccceeee
Confidence 5432110 2357899998877665321 112222346778
Q ss_pred cCCeEEEEEEee--cCceEEEEEEECCCCceEEEE
Q 004067 323 HGNILTAQVLNR--SQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 323 pDg~~l~~~~~~--~~~~~~l~~~d~~~g~~~~l~ 355 (776)
+||+++++.... ......+++||+.+...+.+.
T Consensus 129 ~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 163 (387)
T d1k3ia3 129 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP 163 (387)
T ss_dssp TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred cCCceeeeccccccccccceeeeecCCCCceeecC
Confidence 899976665322 222356899999999887764
|